Query 038606
Match_columns 666
No_of_seqs 658 out of 3336
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 22:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-40 8.4E-45 346.5 42.7 507 41-615 64-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-40 7.9E-45 346.7 42.3 511 76-651 63-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-30 1.5E-34 252.9 44.4 361 3-422 7-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.7E-30 2.3E-34 251.6 45.0 364 36-458 5-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 9.2E-28 3.1E-32 238.6 25.1 201 451-652 12-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.6E-27 1.2E-31 234.3 25.0 185 432-617 29-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 1E-24 3.6E-29 223.7 44.2 448 30-528 6-478 (514)
8 2gw1_A Mitochondrial precursor 100.0 5.8E-25 2E-29 225.6 40.8 456 65-599 5-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.1E-24 1.7E-28 214.4 38.9 326 29-436 25-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 2.1E-24 7E-29 217.3 35.7 332 2-402 33-371 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.3E-24 1.5E-28 220.3 38.3 254 338-599 216-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.7E-23 5.7E-28 215.9 39.2 373 29-458 24-407 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 9.1E-22 3.1E-26 191.5 35.8 330 29-404 2-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.4E-21 8.3E-26 188.5 34.1 316 2-370 10-351 (359)
15 3hym_B Cell division cycle pro 99.9 3.2E-21 1.1E-25 185.2 32.0 302 25-374 17-320 (330)
16 2xm6_A Protein corresponding t 99.9 1.3E-18 4.4E-23 176.1 47.3 190 29-233 38-251 (490)
17 1xi4_A Clathrin heavy chain; a 99.9 1.1E-16 3.9E-21 168.4 60.6 412 27-513 982-1415(1630)
18 1xi4_A Clathrin heavy chain; a 99.9 3.8E-17 1.3E-21 171.9 56.5 386 133-590 983-1375(1630)
19 2xm6_A Protein corresponding t 99.9 7.6E-18 2.6E-22 170.5 49.4 366 47-494 24-433 (490)
20 2ooe_A Cleavage stimulation fa 99.9 3E-18 1E-22 175.3 44.8 401 18-492 2-453 (530)
21 3hym_B Cell division cycle pro 99.9 7.5E-20 2.6E-24 175.6 29.6 284 2-341 29-322 (330)
22 1fch_A Peroxisomal targeting s 99.9 1.2E-20 4.2E-25 184.1 23.8 213 7-233 13-245 (368)
23 2ooe_A Cleavage stimulation fa 99.9 5.2E-18 1.8E-22 173.5 43.6 432 124-634 2-492 (530)
24 1fch_A Peroxisomal targeting s 99.9 4.6E-20 1.6E-24 180.0 23.2 297 8-349 38-355 (368)
25 4eqf_A PEX5-related protein; a 99.8 8.4E-20 2.9E-24 177.8 21.4 279 28-349 63-352 (365)
26 4eqf_A PEX5-related protein; a 99.8 7.4E-20 2.5E-24 178.2 20.3 234 65-352 64-309 (365)
27 4g1t_A Interferon-induced prot 99.8 4.3E-18 1.5E-22 172.2 33.5 207 26-234 47-276 (472)
28 3cv0_A Peroxisome targeting si 99.8 6.2E-19 2.1E-23 168.9 25.0 279 28-350 19-312 (327)
29 3cv0_A Peroxisome targeting si 99.8 1.9E-18 6.6E-23 165.5 23.6 270 2-299 28-312 (327)
30 2pl2_A Hypothetical conserved 99.8 1.4E-18 4.6E-23 154.3 19.7 201 27-233 2-213 (217)
31 4g1t_A Interferon-induced prot 99.8 5.1E-17 1.8E-21 164.2 33.4 383 64-528 49-459 (472)
32 1b89_A Protein (clathrin heavy 99.8 6.6E-18 2.2E-22 159.1 22.5 190 4-229 12-201 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 1.3E-17 4.5E-22 154.9 21.6 252 5-303 9-265 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 3.7E-16 1.3E-20 145.0 27.9 272 369-662 9-287 (291)
35 3u4t_A TPR repeat-containing p 99.8 1.9E-16 6.3E-21 147.0 25.7 242 29-303 2-251 (272)
36 3e4b_A ALGK; tetratricopeptide 99.8 2.8E-16 9.5E-21 156.1 28.3 345 2-424 10-388 (452)
37 1b89_A Protein (clathrin heavy 99.8 1.1E-15 3.9E-20 144.0 29.6 114 103-230 34-147 (449)
38 2h6f_A Protein farnesyltransfe 99.8 2.5E-16 8.7E-21 150.9 25.5 250 29-335 96-364 (382)
39 3e4b_A ALGK; tetratricopeptide 99.7 5.5E-16 1.9E-20 154.0 26.0 350 35-494 8-388 (452)
40 2pl2_A Hypothetical conserved 99.7 1.3E-16 4.3E-21 141.6 18.1 201 63-301 2-213 (217)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 2E-16 7E-21 147.1 19.7 229 1-235 11-245 (275)
42 3uq3_A Heat shock protein STI1 99.7 2.9E-16 9.8E-21 144.5 20.5 218 2-234 12-236 (258)
43 2h6f_A Protein farnesyltransfe 99.7 8.7E-16 3E-20 147.2 22.2 251 64-370 95-364 (382)
44 2ho1_A Type 4 fimbrial biogene 99.7 1.4E-15 4.8E-20 139.2 22.4 200 30-234 37-238 (252)
45 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.2E-20 139.6 22.1 155 67-233 6-167 (258)
46 2q7f_A YRRB protein; TPR, prot 99.7 5E-16 1.7E-20 141.4 18.3 205 25-234 18-222 (243)
47 2vq2_A PILW, putative fimbrial 99.7 2.1E-15 7E-20 135.4 21.7 207 27-240 5-215 (225)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.6E-16 1.9E-20 144.0 16.9 255 38-347 13-269 (275)
49 3u4t_A TPR repeat-containing p 99.7 2E-15 6.9E-20 140.0 20.3 231 2-240 10-254 (272)
50 1ouv_A Conserved hypothetical 99.7 3.1E-14 1.1E-18 131.8 28.0 225 28-303 4-252 (273)
51 2q7f_A YRRB protein; TPR, prot 99.7 2.2E-15 7.6E-20 137.1 19.3 205 2-212 30-234 (243)
52 3vtx_A MAMA; tetratricopeptide 99.7 5.5E-15 1.9E-19 127.7 20.2 168 28-199 3-170 (184)
53 2ho1_A Type 4 fimbrial biogene 99.7 1E-14 3.6E-19 133.4 22.6 195 2-200 44-239 (252)
54 4e6h_A MRNA 3'-END-processing 99.7 5.7E-12 2E-16 129.0 43.5 220 321-565 340-572 (679)
55 1ouv_A Conserved hypothetical 99.7 2.2E-13 7.6E-18 126.0 29.8 226 63-354 3-252 (273)
56 2vq2_A PILW, putative fimbrial 99.6 4E-14 1.4E-18 127.0 23.7 206 63-303 5-212 (225)
57 4e6h_A MRNA 3'-END-processing 99.6 1.5E-11 5.2E-16 125.9 45.2 147 465-615 435-584 (679)
58 4a1s_A PINS, partner of inscut 99.6 3.9E-15 1.3E-19 147.4 16.4 281 30-352 48-371 (411)
59 4abn_A Tetratricopeptide repea 99.6 7.8E-15 2.7E-19 146.7 18.5 217 9-231 82-318 (474)
60 3sf4_A G-protein-signaling mod 99.6 3.7E-15 1.3E-19 147.4 15.8 282 29-352 8-335 (406)
61 2ond_A Cleavage stimulation fa 99.6 8.1E-14 2.8E-18 131.2 24.1 218 12-234 33-270 (308)
62 2ond_A Cleavage stimulation fa 99.6 1.4E-13 4.9E-18 129.5 25.5 221 47-303 33-271 (308)
63 3vtx_A MAMA; tetratricopeptide 99.6 6.1E-14 2.1E-18 121.1 20.1 172 64-240 3-174 (184)
64 3spa_A Mtrpol, DNA-directed RN 99.6 1.4E-15 4.8E-20 155.3 10.1 115 465-580 128-246 (1134)
65 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-15 4E-20 155.8 9.4 123 495-618 123-249 (1134)
66 3ro2_A PINS homolog, G-protein 99.6 1.3E-14 4.6E-19 139.3 16.6 281 30-352 5-331 (338)
67 4a1s_A PINS, partner of inscut 99.6 2E-14 6.9E-19 142.3 16.4 281 66-387 48-371 (411)
68 3sf4_A G-protein-signaling mod 99.6 7.5E-14 2.6E-18 137.9 19.2 283 63-386 6-334 (406)
69 3ro2_A PINS homolog, G-protein 99.6 7.3E-14 2.5E-18 134.1 16.8 282 65-387 4-331 (338)
70 4gyw_A UDP-N-acetylglucosamine 99.5 9.1E-14 3.1E-18 144.1 17.9 169 26-198 5-173 (723)
71 4i17_A Hypothetical protein; T 99.5 4E-13 1.4E-17 120.5 19.8 201 28-242 5-215 (228)
72 3ulq_A Response regulator aspa 99.5 2.8E-13 9.7E-18 132.3 19.6 297 5-352 22-367 (383)
73 4abn_A Tetratricopeptide repea 99.5 1.5E-12 5E-17 130.2 22.7 213 445-665 84-317 (474)
74 3nf1_A KLC 1, kinesin light ch 99.5 9.7E-14 3.3E-18 131.5 13.5 254 29-353 26-307 (311)
75 3nf1_A KLC 1, kinesin light ch 99.5 3.1E-14 1E-18 135.0 9.9 232 1-233 33-306 (311)
76 4gyw_A UDP-N-acetylglucosamine 99.5 6.8E-13 2.3E-17 137.7 18.7 168 63-233 6-173 (723)
77 3as5_A MAMA; tetratricopeptide 99.5 1.5E-12 5.1E-17 112.5 17.1 164 31-198 9-172 (186)
78 3ulq_A Response regulator aspa 99.5 8.9E-12 3E-16 121.6 23.9 224 438-665 112-364 (383)
79 4i17_A Hypothetical protein; T 99.5 3.5E-12 1.2E-16 114.3 18.2 165 63-234 4-177 (228)
80 3urz_A Uncharacterized protein 99.4 3.2E-12 1.1E-16 112.2 16.7 175 29-210 3-195 (208)
81 3as5_A MAMA; tetratricopeptide 99.4 5.6E-12 1.9E-16 108.9 17.3 166 66-234 8-173 (186)
82 1hz4_A MALT regulatory protein 99.4 2.3E-11 7.9E-16 118.3 23.3 278 31-352 15-321 (373)
83 4ga2_A E3 SUMO-protein ligase 99.4 2.2E-12 7.5E-17 106.2 12.9 145 36-184 3-148 (150)
84 3qky_A Outer membrane assembly 99.4 6.6E-12 2.3E-16 115.1 17.4 172 26-199 11-224 (261)
85 1hz4_A MALT regulatory protein 99.4 5.6E-11 1.9E-15 115.6 24.9 279 68-387 16-321 (373)
86 4ga2_A E3 SUMO-protein ligase 99.4 1.3E-12 4.6E-17 107.5 10.8 146 1-150 3-149 (150)
87 3edt_B KLC 2, kinesin light ch 99.4 2.2E-12 7.6E-17 120.1 13.3 225 8-233 14-280 (283)
88 3q15_A PSP28, response regulat 99.4 9E-11 3.1E-15 114.2 24.3 224 437-665 109-361 (378)
89 2pzi_A Probable serine/threoni 99.4 6.8E-12 2.3E-16 131.3 17.1 174 41-220 402-583 (681)
90 2r5s_A Uncharacterized protein 99.4 5.3E-12 1.8E-16 107.6 12.4 165 29-197 5-171 (176)
91 3q15_A PSP28, response regulat 99.4 1.5E-11 5.2E-16 119.7 16.9 227 4-233 110-364 (378)
92 2yhc_A BAMD, UPF0169 lipoprote 99.3 5.1E-11 1.8E-15 106.1 18.5 187 28-235 2-214 (225)
93 2pzi_A Probable serine/threoni 99.3 2E-11 7E-16 127.7 16.4 175 6-185 402-583 (681)
94 3qou_A Protein YBBN; thioredox 99.3 3E-11 1E-15 111.9 15.7 169 26-197 113-282 (287)
95 1qqe_A Vesicular transport pro 99.3 4.7E-11 1.6E-15 111.1 16.4 200 32-233 39-268 (292)
96 2fo7_A Synthetic consensus TPR 99.3 8.7E-11 3E-15 95.1 15.7 131 31-164 2-132 (136)
97 2yhc_A BAMD, UPF0169 lipoprote 99.3 1E-10 3.5E-15 104.2 16.4 178 2-199 11-213 (225)
98 3qky_A Outer membrane assembly 99.3 4.7E-11 1.6E-15 109.4 14.6 162 2-165 22-225 (261)
99 3dra_A Protein farnesyltransfe 99.3 2.7E-09 9.3E-14 97.8 25.8 228 37-301 39-286 (306)
100 3urz_A Uncharacterized protein 99.3 1E-10 3.5E-15 102.6 15.8 172 65-242 3-192 (208)
101 1qqe_A Vesicular transport pro 99.2 1.1E-10 3.8E-15 108.6 15.4 197 3-199 45-269 (292)
102 3edt_B KLC 2, kinesin light ch 99.2 3.3E-10 1.1E-14 105.3 17.4 225 440-665 12-277 (283)
103 3mv2_B Coatomer subunit epsilo 99.2 3.4E-09 1.1E-13 95.9 22.7 261 29-354 13-283 (310)
104 3qou_A Protein YBBN; thioredox 99.2 2.9E-10 9.9E-15 105.3 16.4 168 63-233 114-283 (287)
105 2r5s_A Uncharacterized protein 99.2 1.1E-10 3.8E-15 99.3 12.3 157 2-163 13-172 (176)
106 4gco_A Protein STI-1; structur 99.2 1.9E-10 6.4E-15 91.1 12.0 112 30-144 13-124 (126)
107 3rjv_A Putative SEL1 repeat pr 99.2 8.2E-10 2.8E-14 97.0 17.3 175 13-200 4-198 (212)
108 3rjv_A Putative SEL1 repeat pr 99.2 1.5E-09 5.3E-14 95.2 18.5 178 47-236 3-199 (212)
109 2uy1_A Cleavage stimulation fa 99.2 1E-07 3.5E-12 95.0 33.7 125 500-633 287-412 (493)
110 2uy1_A Cleavage stimulation fa 99.2 4.8E-08 1.6E-12 97.3 31.2 377 7-457 6-412 (493)
111 3dra_A Protein farnesyltransfe 99.2 3.9E-09 1.3E-13 96.8 21.5 220 9-233 47-286 (306)
112 3mv2_B Coatomer subunit epsilo 99.2 1.4E-08 4.8E-13 91.8 24.7 179 448-634 85-282 (310)
113 2fo7_A Synthetic consensus TPR 99.2 8.6E-10 2.9E-14 89.1 15.4 129 68-198 3-131 (136)
114 2vsy_A XCC0866; transferase, g 99.2 2.6E-10 8.9E-15 117.5 15.1 152 9-164 3-157 (568)
115 2vsy_A XCC0866; transferase, g 99.1 4.4E-10 1.5E-14 115.8 15.6 163 43-210 2-167 (568)
116 2c2l_A CHIP, carboxy terminus 99.1 2.6E-10 9E-15 105.1 10.1 197 28-234 2-199 (281)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4.2E-09 1.5E-13 92.9 16.9 128 33-166 9-152 (213)
118 3gyz_A Chaperone protein IPGC; 99.1 1.3E-10 4.4E-15 94.8 6.0 102 63-165 33-134 (151)
119 3gyz_A Chaperone protein IPGC; 99.1 4.2E-10 1.4E-14 91.8 9.1 103 29-134 35-137 (151)
120 4gco_A Protein STI-1; structur 99.1 1.6E-09 5.5E-14 85.7 11.9 113 63-177 10-122 (126)
121 2ifu_A Gamma-SNAP; membrane fu 99.1 2.9E-09 1E-13 99.8 15.7 190 7-197 3-222 (307)
122 2vgx_A Chaperone SYCD; alterna 99.1 8E-10 2.7E-14 90.4 10.4 105 29-136 20-124 (148)
123 1a17_A Serine/threonine protei 99.1 3.4E-09 1.2E-13 89.2 14.6 131 30-163 13-145 (166)
124 3q7a_A Farnesyltransferase alp 99.0 8.8E-08 3E-12 88.6 24.1 252 34-302 58-331 (349)
125 4f3v_A ESX-1 secretion system 99.0 2.1E-09 7E-14 95.9 12.5 196 38-240 15-241 (282)
126 2lni_A Stress-induced-phosphop 99.0 2.3E-09 7.8E-14 86.3 12.0 121 26-149 12-132 (133)
127 2ifu_A Gamma-SNAP; membrane fu 99.0 5.6E-09 1.9E-13 97.9 15.9 204 42-303 3-224 (307)
128 1na0_A Designed protein CTPR3; 99.0 5.3E-09 1.8E-13 83.0 13.5 116 30-148 9-124 (125)
129 2vyi_A SGTA protein; chaperone 99.0 3.9E-09 1.3E-13 84.6 12.4 120 29-151 11-130 (131)
130 2e2e_A Formate-dependent nitri 99.0 1.9E-09 6.3E-14 91.9 10.8 123 40-165 20-145 (177)
131 1p5q_A FKBP52, FK506-binding p 99.0 1.4E-09 4.8E-14 103.1 10.6 130 29-161 146-291 (336)
132 2vgx_A Chaperone SYCD; alterna 99.0 1.7E-09 5.9E-14 88.4 9.7 112 51-165 8-119 (148)
133 3upv_A Heat shock protein STI1 99.0 4.2E-09 1.4E-13 83.7 11.7 112 30-144 4-121 (126)
134 2xcb_A PCRH, regulatory protei 99.0 2.7E-09 9.3E-14 86.8 10.7 107 29-138 17-123 (142)
135 2e2e_A Formate-dependent nitri 99.0 9.6E-09 3.3E-13 87.4 13.4 129 5-137 20-151 (177)
136 3q7a_A Farnesyltransferase alp 98.9 8.4E-08 2.9E-12 88.7 19.2 225 5-234 64-331 (349)
137 2fbn_A 70 kDa peptidylprolyl i 98.9 4E-09 1.4E-13 91.7 9.6 123 30-155 38-176 (198)
138 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.7E-08 9.2E-13 87.7 15.0 126 2-134 13-154 (213)
139 3dss_A Geranylgeranyl transfer 98.9 4.8E-07 1.6E-11 83.4 23.5 228 40-303 39-305 (331)
140 1p5q_A FKBP52, FK506-binding p 98.9 1.2E-09 4.3E-14 103.4 6.5 153 42-197 125-292 (336)
141 2qfc_A PLCR protein; TPR, HTH, 98.9 1.3E-07 4.3E-12 88.0 19.8 209 18-233 34-265 (293)
142 1a17_A Serine/threonine protei 98.9 2.8E-08 9.7E-13 83.4 14.0 129 67-197 14-144 (166)
143 1elw_A TPR1-domain of HOP; HOP 98.9 4E-08 1.4E-12 76.8 13.8 112 30-144 4-115 (118)
144 2fbn_A 70 kDa peptidylprolyl i 98.9 1.5E-09 5.3E-14 94.3 6.0 156 31-190 5-176 (198)
145 2xcb_A PCRH, regulatory protei 98.9 6.6E-09 2.2E-13 84.5 9.1 111 52-165 6-116 (142)
146 2lni_A Stress-induced-phosphop 98.9 3E-08 1E-12 79.6 13.0 120 63-184 13-132 (133)
147 3u3w_A Transcriptional activat 98.9 2.9E-08 1E-12 92.3 14.6 210 17-233 33-265 (293)
148 2c2l_A CHIP, carboxy terminus 98.9 6E-09 2E-13 96.0 9.6 188 2-199 11-199 (281)
149 3sz7_A HSC70 cochaperone (SGT) 98.9 2.1E-08 7.1E-13 84.0 12.1 109 29-140 10-118 (164)
150 3q49_B STIP1 homology and U bo 98.9 2.1E-08 7.2E-13 81.0 11.5 103 27-132 6-108 (137)
151 2qfc_A PLCR protein; TPR, HTH, 98.9 1.2E-07 4.2E-12 88.1 17.9 165 31-197 76-264 (293)
152 2xev_A YBGF; tetratricopeptide 98.8 6.8E-08 2.3E-12 77.0 14.1 108 31-141 3-116 (129)
153 3u3w_A Transcriptional activat 98.8 2.7E-07 9.4E-12 85.7 20.1 163 36-198 81-265 (293)
154 2vyi_A SGTA protein; chaperone 98.8 2.8E-08 9.5E-13 79.5 11.4 120 64-185 10-129 (131)
155 1hxi_A PEX5, peroxisome target 98.8 2E-08 6.8E-13 78.7 10.0 98 32-132 19-116 (121)
156 3upv_A Heat shock protein STI1 98.8 4.3E-08 1.5E-12 77.7 11.9 100 65-165 3-102 (126)
157 1na0_A Designed protein CTPR3; 98.8 8.6E-08 2.9E-12 75.8 13.5 113 66-180 9-121 (125)
158 4f3v_A ESX-1 secretion system 98.8 1E-07 3.6E-12 85.0 14.9 192 113-354 18-238 (282)
159 3gw4_A Uncharacterized protein 98.8 2E-08 6.8E-13 87.8 10.2 86 8-94 5-94 (203)
160 2dba_A Smooth muscle cell asso 98.8 9.1E-08 3.1E-12 78.4 13.5 116 28-146 26-144 (148)
161 3gw4_A Uncharacterized protein 98.8 3.4E-08 1.2E-12 86.2 11.2 121 40-162 2-134 (203)
162 1wao_1 Serine/threonine protei 98.8 2.1E-08 7.3E-13 99.7 10.5 127 31-160 7-135 (477)
163 2kck_A TPR repeat; tetratricop 98.8 7.3E-08 2.5E-12 74.5 11.5 102 29-132 5-108 (112)
164 4gcn_A Protein STI-1; structur 98.8 9.2E-08 3.1E-12 75.7 12.1 98 32-131 10-113 (127)
165 2kck_A TPR repeat; tetratricop 98.8 9.3E-08 3.2E-12 73.9 11.7 103 63-166 3-108 (112)
166 3dss_A Geranylgeranyl transfer 98.8 1.3E-06 4.4E-11 80.5 20.7 216 13-234 48-304 (331)
167 4gcn_A Protein STI-1; structur 98.7 7.5E-08 2.6E-12 76.2 11.0 97 67-164 9-112 (127)
168 1elw_A TPR1-domain of HOP; HOP 98.7 2.7E-07 9.3E-12 71.9 13.7 100 65-165 3-102 (118)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.8E-08 9.5E-13 98.6 9.1 124 29-155 267-405 (457)
170 1hxi_A PEX5, peroxisome target 98.7 8.1E-08 2.8E-12 75.2 10.0 98 67-165 18-115 (121)
171 1elr_A TPR2A-domain of HOP; HO 98.7 6.1E-08 2.1E-12 77.5 9.6 112 30-144 4-121 (131)
172 3sz7_A HSC70 cochaperone (SGT) 98.7 1.5E-07 5.1E-12 78.7 11.9 102 63-165 8-109 (164)
173 3q49_B STIP1 homology and U bo 98.7 2.8E-07 9.7E-12 74.3 12.5 101 63-164 6-106 (137)
174 3rkv_A Putative peptidylprolyl 98.6 1.3E-07 4.3E-12 79.0 10.0 105 30-135 11-131 (162)
175 3k9i_A BH0479 protein; putativ 98.6 5.1E-08 1.7E-12 76.0 6.6 86 8-95 3-90 (117)
176 2dba_A Smooth muscle cell asso 98.6 6.9E-07 2.3E-11 73.1 13.4 114 63-178 25-141 (148)
177 1ihg_A Cyclophilin 40; ppiase 98.6 2.7E-07 9.3E-12 88.3 11.6 123 31-156 224-362 (370)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3.1E-08 1.1E-12 98.2 5.0 145 43-190 247-405 (457)
179 3k9i_A BH0479 protein; putativ 98.6 1.2E-07 4.1E-12 73.8 7.2 101 42-143 2-103 (117)
180 2xev_A YBGF; tetratricopeptide 98.6 1.2E-06 4E-11 69.7 13.3 97 68-165 4-106 (129)
181 1elr_A TPR2A-domain of HOP; HO 98.6 1.9E-07 6.4E-12 74.5 8.6 98 66-164 4-108 (131)
182 4b4t_Q 26S proteasome regulato 98.6 4.3E-06 1.5E-10 82.8 20.0 204 30-233 4-244 (434)
183 2if4_A ATFKBP42; FKBP-like, al 98.5 2.3E-07 7.8E-12 87.9 9.2 149 30-199 179-328 (338)
184 1dce_A Protein (RAB geranylger 98.5 2.8E-06 9.7E-11 86.0 17.5 176 43-223 42-244 (567)
185 2hr2_A Hypothetical protein; a 98.5 3.4E-07 1.1E-11 73.3 7.6 99 31-132 12-133 (159)
186 1wao_1 Serine/threonine protei 98.5 3.6E-07 1.2E-11 90.9 9.0 120 2-125 13-134 (477)
187 3rkv_A Putative peptidylprolyl 98.5 6.4E-07 2.2E-11 74.6 9.2 101 65-165 10-127 (162)
188 4b4t_Q 26S proteasome regulato 98.4 3.1E-05 1.1E-09 76.6 21.8 205 68-301 6-244 (434)
189 2hr2_A Hypothetical protein; a 98.4 2.2E-06 7.4E-11 68.7 10.5 99 66-164 11-131 (159)
190 3ro3_A PINS homolog, G-protein 98.4 1.4E-06 4.9E-11 72.5 10.1 133 30-162 9-156 (164)
191 1ihg_A Cyclophilin 40; ppiase 98.4 1.8E-06 6.1E-11 82.6 10.8 122 67-189 224-360 (370)
192 3ro3_A PINS homolog, G-protein 98.3 2.8E-06 9.5E-11 70.7 10.2 96 67-162 10-116 (164)
193 2l6j_A TPR repeat-containing p 98.3 7E-07 2.4E-11 68.7 4.8 65 30-96 4-68 (111)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 1.9E-06 6.3E-11 81.6 8.5 150 65-234 178-328 (338)
195 2l6j_A TPR repeat-containing p 98.2 6.2E-07 2.1E-11 69.0 4.0 98 64-162 2-105 (111)
196 1zu2_A Mitochondrial import re 98.2 2.1E-06 7.2E-11 68.6 6.9 40 42-83 14-53 (158)
197 1dce_A Protein (RAB geranylger 98.2 1.4E-05 4.8E-10 80.9 14.7 172 12-188 46-244 (567)
198 1na3_A Designed protein CTPR2; 98.2 5.3E-06 1.8E-10 60.8 8.7 63 31-95 10-72 (91)
199 1na3_A Designed protein CTPR2; 98.2 9.3E-06 3.2E-10 59.5 9.3 84 65-149 8-91 (91)
200 2kat_A Uncharacterized protein 98.2 5.7E-06 2E-10 63.9 8.4 78 14-94 4-81 (115)
201 1klx_A Cysteine rich protein B 98.2 2.5E-05 8.5E-10 62.4 12.0 109 45-164 10-126 (138)
202 1zu2_A Mitochondrial import re 98.1 4.3E-06 1.5E-10 66.8 6.5 98 77-177 13-131 (158)
203 2kat_A Uncharacterized protein 98.1 9.9E-06 3.4E-10 62.6 8.4 100 47-149 2-103 (115)
204 1klx_A Cysteine rich protein B 98.1 9.3E-05 3.2E-09 59.1 14.2 112 8-131 8-127 (138)
205 3ma5_A Tetratricopeptide repea 98.1 9.4E-06 3.2E-10 60.7 7.2 67 27-95 4-70 (100)
206 3n71_A Histone lysine methyltr 98.0 3.2E-05 1.1E-09 76.2 11.8 126 38-163 317-463 (490)
207 3ma5_A Tetratricopeptide repea 97.9 3.9E-05 1.3E-09 57.2 8.4 67 63-130 4-70 (100)
208 2kc7_A BFR218_protein; tetratr 97.9 2E-05 6.8E-10 58.8 5.7 85 35-130 5-90 (99)
209 3n71_A Histone lysine methyltr 97.9 2.8E-05 9.6E-10 76.6 8.1 126 5-130 319-464 (490)
210 3ly7_A Transcriptional activat 97.8 0.00021 7.2E-09 66.0 12.9 52 24-77 188-244 (372)
211 3bee_A Putative YFRE protein; 97.8 0.00016 5.3E-09 52.6 8.7 71 26-98 2-75 (93)
212 2kc7_A BFR218_protein; tetratr 97.7 5.5E-05 1.9E-09 56.3 5.5 67 71-138 5-72 (99)
213 3ly7_A Transcriptional activat 97.6 0.001 3.4E-08 61.5 13.1 122 117-242 215-345 (372)
214 3bee_A Putative YFRE protein; 97.5 0.00058 2E-08 49.5 8.8 70 63-133 3-75 (93)
215 3lvg_A Clathrin heavy chain 1; 97.5 6.7E-07 2.3E-11 83.5 -8.8 90 273-385 199-288 (624)
216 1pc2_A Mitochondria fission pr 97.5 0.00066 2.2E-08 53.5 8.9 86 47-134 15-104 (152)
217 4ady_A RPN2, 26S proteasome re 97.3 0.22 7.4E-06 52.4 42.1 312 331-655 381-721 (963)
218 3lvg_A Clathrin heavy chain 1; 97.3 2.9E-06 1E-10 79.4 -6.7 175 28-232 52-226 (624)
219 3u64_A Protein TP_0956; tetrat 97.2 0.016 5.6E-07 51.2 16.0 90 151-240 179-277 (301)
220 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0018 6.1E-08 48.4 8.6 69 28-96 3-76 (104)
221 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0021 7.2E-08 48.0 8.9 76 64-139 3-84 (104)
222 3u64_A Protein TP_0956; tetrat 97.1 0.0012 3.9E-08 58.3 7.8 107 117-231 179-295 (301)
223 1pc2_A Mitochondria fission pr 97.1 0.0037 1.3E-07 49.3 9.2 87 9-98 12-103 (152)
224 3qww_A SET and MYND domain-con 97.0 0.00097 3.3E-08 64.5 6.6 85 45-129 313-410 (433)
225 4h7y_A Dual specificity protei 97.0 0.014 4.7E-07 45.2 11.3 105 63-168 10-127 (161)
226 3qww_A SET and MYND domain-con 97.0 0.0017 5.8E-08 62.8 8.0 87 78-164 310-411 (433)
227 3qwp_A SET and MYND domain-con 96.8 0.0036 1.2E-07 60.7 9.1 92 37-128 294-398 (429)
228 4h7y_A Dual specificity protei 96.8 0.021 7E-07 44.3 11.0 114 27-143 10-136 (161)
229 3qwp_A SET and MYND domain-con 96.8 0.0019 6.7E-08 62.6 6.7 89 6-94 298-399 (429)
230 1nzn_A CGI-135 protein, fissio 96.6 0.011 3.8E-07 44.7 8.3 87 47-135 18-108 (126)
231 3mkq_A Coatomer beta'-subunit; 96.3 0.17 5.9E-06 54.4 19.4 26 206-231 682-707 (814)
232 3mkq_B Coatomer subunit alpha; 96.3 0.33 1.1E-05 39.4 15.9 47 180-232 15-61 (177)
233 3mkq_B Coatomer subunit alpha; 96.1 0.14 4.9E-06 41.5 12.8 99 77-195 16-114 (177)
234 4ady_A RPN2, 26S proteasome re 96.1 1.9 6.3E-05 45.6 39.6 259 282-563 383-658 (963)
235 1wy6_A Hypothetical protein ST 96.0 0.34 1.2E-05 36.7 13.7 140 475-637 18-157 (172)
236 3mkq_A Coatomer beta'-subunit; 96.0 0.27 9.4E-06 52.7 18.8 27 170-196 681-707 (814)
237 1nzn_A CGI-135 protein, fissio 95.6 0.07 2.4E-06 40.4 8.3 17 181-197 85-101 (126)
238 1wy6_A Hypothetical protein ST 95.1 0.81 2.8E-05 34.7 15.5 141 439-602 17-157 (172)
239 3ffl_A Anaphase-promoting comp 94.7 0.26 8.9E-06 39.2 9.4 138 29-180 19-165 (167)
240 4gns_B Protein CSD3, chitin bi 94.7 0.19 6.6E-06 51.8 11.1 51 580-631 347-397 (754)
241 3ffl_A Anaphase-promoting comp 94.0 0.62 2.1E-05 37.1 10.2 134 67-215 21-165 (167)
242 3o48_A Mitochondria fission 1 93.6 0.64 2.2E-05 35.3 9.1 25 109-133 86-110 (134)
243 1qsa_A Protein (soluble lytic 93.3 7.7 0.00026 39.3 35.2 438 6-499 17-485 (618)
244 1y8m_A FIS1; mitochondria, unk 93.3 1.7 5.7E-05 33.6 11.2 71 64-134 37-110 (144)
245 3o48_A Mitochondria fission 1 93.3 0.74 2.5E-05 35.0 9.1 72 25-98 35-110 (134)
246 4gns_B Protein CSD3, chitin bi 92.7 0.64 2.2E-05 48.0 10.8 127 105-232 252-398 (754)
247 4b4t_P 26S proteasome regulato 92.4 8.5 0.00029 37.3 20.3 100 173-301 140-246 (445)
248 4fhn_B Nucleoporin NUP120; pro 92.2 2.4 8.3E-05 47.1 15.5 146 32-186 814-987 (1139)
249 1y8m_A FIS1; mitochondria, unk 91.7 2.2 7.5E-05 32.9 10.0 72 25-98 34-109 (144)
250 2ff4_A Probable regulatory pro 91.4 0.89 3E-05 43.3 9.6 55 36-92 177-231 (388)
251 2ff4_A Probable regulatory pro 91.3 0.92 3.2E-05 43.2 9.6 71 537-609 174-249 (388)
252 3txn_A 26S proteasome regulato 91.0 7.2 0.00024 36.8 15.0 26 465-490 20-45 (394)
253 1v54_E Cytochrome C oxidase po 89.8 1.6 5.4E-05 31.1 7.0 75 69-143 11-87 (109)
254 1zbp_A Hypothetical protein VP 89.8 6.9 0.00024 34.2 12.6 117 38-164 5-129 (273)
255 1qsa_A Protein (soluble lytic 89.2 21 0.00071 36.3 38.9 116 373-492 228-347 (618)
256 4b4t_P 26S proteasome regulato 88.8 18 0.00061 35.1 22.1 51 337-387 29-84 (445)
257 1v54_E Cytochrome C oxidase po 87.8 5.9 0.0002 28.3 9.3 52 514-565 25-76 (109)
258 3lpz_A GET4 (YOR164C homolog); 86.8 18 0.00063 32.9 19.4 165 106-301 40-215 (336)
259 4fhn_B Nucleoporin NUP120; pro 86.6 6.4 0.00022 43.8 13.3 151 105-261 816-992 (1139)
260 2y69_E Cytochrome C oxidase su 83.9 12 0.00042 28.4 9.4 52 514-565 68-119 (152)
261 2y69_E Cytochrome C oxidase su 83.7 8 0.00027 29.3 8.2 60 588-648 71-130 (152)
262 4b4t_R RPN7, 26S proteasome re 80.6 9.5 0.00032 36.8 10.3 96 103-198 133-236 (429)
263 1zbp_A Hypothetical protein VP 79.3 32 0.0011 30.1 14.0 114 110-233 6-128 (273)
264 3ltm_A Alpha-REP4; protein eng 77.1 31 0.0011 28.9 17.1 154 64-233 31-184 (211)
265 4b4t_R RPN7, 26S proteasome re 76.6 26 0.0009 33.7 12.0 62 466-527 133-196 (429)
266 3ltm_A Alpha-REP4; protein eng 73.6 39 0.0013 28.3 16.9 153 29-198 32-184 (211)
267 3esl_A Checkpoint serine/threo 73.1 39 0.0013 28.0 10.8 58 547-604 92-149 (202)
268 3lpz_A GET4 (YOR164C homolog); 69.4 68 0.0023 29.3 22.8 25 533-557 135-159 (336)
269 1oyz_A Hypothetical protein YI 68.8 62 0.0021 28.6 17.0 186 29-231 36-232 (280)
270 2wpv_A GET4, UPF0363 protein Y 67.9 71 0.0024 28.9 20.4 26 533-558 133-158 (312)
271 4b4t_S RPN3, 26S proteasome re 67.2 88 0.003 30.6 12.8 24 69-92 234-257 (523)
272 2wpv_A GET4, UPF0363 protein Y 67.1 73 0.0025 28.8 20.8 25 272-296 133-157 (312)
273 3esl_A Checkpoint serine/threo 64.1 61 0.0021 26.9 12.0 56 512-568 92-148 (202)
274 2uwj_G Type III export protein 60.3 43 0.0015 23.8 8.9 50 180-235 49-98 (115)
275 2uwj_G Type III export protein 60.0 44 0.0015 23.8 8.0 86 115-208 20-105 (115)
276 3txn_A 26S proteasome regulato 59.5 1.2E+02 0.004 28.6 24.0 168 359-526 19-208 (394)
277 2p58_C Putative type III secre 59.3 46 0.0016 23.8 9.6 50 180-235 50-99 (116)
278 3ubw_A 14-3-3E, 14-3-3 protein 59.2 71 0.0024 27.7 9.5 63 29-92 30-93 (261)
279 2p58_C Putative type III secre 58.7 47 0.0016 23.7 8.7 86 115-208 21-106 (116)
280 4a1g_A Mitotic checkpoint seri 55.9 72 0.0025 25.0 9.8 52 588-639 83-135 (152)
281 3kae_A CDC27, possible protein 55.7 78 0.0027 25.3 8.5 98 182-303 45-144 (242)
282 2wvi_A Mitotic checkpoint seri 55.3 35 0.0012 27.2 6.5 51 553-603 79-129 (164)
283 1bpo_A Protein (clathrin); cla 51.8 96 0.0033 29.7 9.7 36 22-57 353-388 (494)
284 4a1g_A Mitotic checkpoint seri 49.2 94 0.0032 24.4 10.2 54 551-604 82-135 (152)
285 4b4t_S RPN3, 26S proteasome re 49.1 85 0.0029 30.7 9.3 65 101-165 231-300 (523)
286 3uzd_A 14-3-3 protein gamma; s 47.4 1.2E+02 0.0042 26.1 9.1 39 2-40 11-49 (248)
287 3eiq_C Programmed cell death p 45.8 1.7E+02 0.0057 27.1 10.4 25 276-300 220-244 (358)
288 1o9d_A 14-3-3-like protein C; 45.5 1.5E+02 0.0052 25.8 9.9 40 2-41 15-56 (260)
289 2npm_A 14-3-3 domain containin 45.4 1.5E+02 0.0052 25.8 9.4 63 29-92 27-93 (260)
290 2fe3_A Peroxide operon regulat 45.0 99 0.0034 24.0 7.8 61 595-656 12-72 (145)
291 4aez_C MAD3, mitotic spindle c 44.7 53 0.0018 27.8 6.3 47 553-599 133-179 (223)
292 3bqo_A Telomeric repeat-bindin 44.3 98 0.0033 25.4 7.4 44 108-151 124-167 (211)
293 4aez_C MAD3, mitotic spindle c 44.0 1.3E+02 0.0045 25.4 8.6 55 586-640 130-185 (223)
294 1mzb_A Ferric uptake regulatio 43.9 99 0.0034 23.6 7.6 60 596-656 9-69 (136)
295 1bpo_A Protein (clathrin); cla 42.9 2.3E+02 0.0078 27.3 10.8 110 337-451 342-451 (494)
296 3bu8_A Telomeric repeat-bindin 42.4 1.1E+02 0.0038 25.5 7.5 48 117-164 88-143 (235)
297 2d2s_A Exocyst complex compone 41.4 1.1E+02 0.0039 26.1 8.2 90 505-598 24-119 (235)
298 2xig_A Ferric uptake regulatio 41.1 1.1E+02 0.0037 23.9 7.5 61 595-656 17-77 (150)
299 1ya0_A SMG-7 transcript varian 40.7 1.3E+02 0.0044 29.5 9.4 49 43-93 165-213 (497)
300 2w57_A Ferric uptake regulatio 39.9 1.1E+02 0.0036 24.0 7.2 61 595-656 7-68 (150)
301 2ijq_A Hypothetical protein; s 39.8 1.4E+02 0.0048 23.7 7.7 60 173-233 36-103 (161)
302 3bu8_A Telomeric repeat-bindin 37.3 71 0.0024 26.6 5.7 51 82-132 88-145 (235)
303 2d2s_A Exocyst complex compone 36.2 1.7E+02 0.0059 25.0 8.5 91 540-633 24-119 (235)
304 3eyy_A Putative iron uptake re 36.2 96 0.0033 24.1 6.4 59 595-655 9-67 (145)
305 3ltj_A Alpharep-4; protein eng 35.3 1.8E+02 0.0062 23.7 17.6 59 169-232 120-178 (201)
306 4gq2_M Nucleoporin NUP120; bet 34.3 3.5E+02 0.012 29.3 12.5 129 107-252 816-948 (950)
307 4ets_A Ferric uptake regulatio 34.1 1.4E+02 0.0049 23.7 7.2 59 596-655 24-84 (162)
308 3mv2_A Coatomer subunit alpha; 32.8 2.8E+02 0.0096 25.1 10.7 49 587-635 187-237 (325)
309 4ets_A Ferric uptake regulatio 32.7 93 0.0032 24.8 5.9 23 107-129 38-60 (162)
310 2nsz_A Programmed cell death p 32.5 1.6E+02 0.0054 22.3 6.9 21 107-127 13-33 (129)
311 2ijq_A Hypothetical protein; s 32.4 1.9E+02 0.0064 23.0 8.2 52 546-598 44-103 (161)
312 1oai_A Nuclear RNA export fact 31.0 45 0.0016 21.0 2.9 33 35-67 24-57 (59)
313 3ubw_A 14-3-3E, 14-3-3 protein 30.3 2.7E+02 0.0093 24.2 10.1 57 505-561 37-94 (261)
314 2nsz_A Programmed cell death p 30.3 1.8E+02 0.006 22.0 7.8 25 537-561 10-34 (129)
315 1ya0_A SMG-7 transcript varian 30.3 2.5E+02 0.0085 27.5 9.5 48 115-162 166-213 (497)
316 4gq2_M Nucleoporin NUP120; bet 29.7 3E+02 0.01 29.9 10.9 133 33-183 813-949 (950)
317 1wdy_A 2-5A-dependent ribonucl 29.6 1.9E+02 0.0064 25.1 8.4 23 217-239 191-213 (285)
318 2ion_A PDCD4, programmed cell 29.6 1.5E+02 0.0052 23.2 6.5 22 539-560 14-35 (152)
319 2fu4_A Ferric uptake regulatio 29.3 1.3E+02 0.0045 20.2 7.3 61 595-656 7-68 (83)
320 2wvi_A Mitotic checkpoint seri 28.9 2.2E+02 0.0075 22.7 11.9 55 587-641 77-132 (164)
321 2cos_A Serine/threonine protei 28.9 37 0.0013 20.7 2.1 37 590-631 10-48 (54)
322 2o03_A Probable zinc uptake re 27.5 41 0.0014 25.6 2.9 47 36-83 16-62 (131)
323 2keb_A DNA polymerase subunit 27.5 1.7E+02 0.0057 20.8 7.0 59 587-647 26-89 (101)
324 2b7e_A PRE-mRNA processing pro 26.9 86 0.0029 19.8 3.6 30 82-111 2-31 (59)
325 3i5p_A Nucleoporin NUP170; hel 26.7 3.7E+02 0.013 26.5 9.9 204 412-641 28-253 (525)
326 2fe3_A Peroxide operon regulat 26.5 2.2E+02 0.0076 21.9 7.6 13 151-163 37-49 (145)
327 2ion_A PDCD4, programmed cell 26.2 1.4E+02 0.0048 23.4 5.8 22 106-127 14-35 (152)
328 3bqo_A Telomeric repeat-bindin 25.5 1E+02 0.0035 25.3 4.7 45 139-184 121-165 (211)
329 3ltj_A Alpharep-4; protein eng 25.3 2.7E+02 0.0093 22.6 18.6 152 29-197 27-178 (201)
330 2r9g_A AAA ATPase, central reg 24.8 3E+02 0.01 22.8 10.6 54 477-531 27-85 (204)
331 2zu6_B Programmed cell death p 24.6 3.9E+02 0.013 24.0 10.2 25 104-128 6-30 (307)
332 2rpa_A Katanin P60 ATPase-cont 24.5 57 0.0019 22.0 2.7 26 34-59 16-41 (78)
333 2xig_A Ferric uptake regulatio 24.4 2.5E+02 0.0086 21.8 7.3 12 151-162 42-53 (150)
334 3kea_A K1L; tropism, ANK repea 24.3 2.9E+02 0.01 24.2 8.5 182 40-240 38-223 (285)
335 2w57_A Ferric uptake regulatio 24.2 2.5E+02 0.0086 21.8 7.0 8 120-127 36-43 (150)
336 1mzb_A Ferric uptake regulatio 23.8 2.4E+02 0.0082 21.4 6.7 10 119-128 36-45 (136)
337 3mwm_A ZUR, putative metal upt 23.8 45 0.0015 25.7 2.5 44 1-44 19-62 (139)
338 3bge_A Predicted ATPase; struc 23.6 3.1E+02 0.011 22.6 9.2 17 443-459 21-37 (201)
339 1ug3_A EIF4GI, eukaryotic prot 23.5 2.1E+02 0.0071 26.3 7.3 23 105-127 15-37 (339)
340 4fke_A Aminopeptidase N; zinc 23.5 7.1E+02 0.024 26.7 15.4 155 37-197 693-858 (909)
341 3eyy_A Putative iron uptake re 23.1 2.1E+02 0.0071 22.1 6.2 11 153-163 35-45 (145)
342 2br9_A 14-3-3E, 14-3-3 protein 22.6 57 0.002 27.9 3.0 46 31-77 6-51 (234)
343 1oyz_A Hypothetical protein YI 22.3 3.9E+02 0.013 23.2 24.0 122 497-633 140-262 (280)
344 3f3f_C Nucleoporin NUP85; stru 22.3 5.9E+02 0.02 25.3 15.1 49 186-234 497-545 (570)
345 3t5v_B Nuclear mRNA export pro 21.4 5.5E+02 0.019 24.7 10.2 59 105-163 180-248 (455)
346 2crb_A Nuclear receptor bindin 20.5 1.4E+02 0.0048 20.9 3.9 25 33-57 18-42 (97)
347 3ctd_A Putative ATPase, AAA fa 20.4 3.8E+02 0.013 22.4 9.9 55 477-531 48-107 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-40 Score=346.51 Aligned_cols=507 Identities=13% Similarity=0.035 Sum_probs=383.0
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 038606 41 GSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKA 120 (666)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 120 (666)
...|....+...+.... .++...|..++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|
T Consensus 64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 34455555555554333 356777888888888888888888888888754 34667777788888888888888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC---------------CCCcchhhHHHHHHhhhccCC
Q 038606 121 LSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC---------------NIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~ 185 (666)
+.+|+++... +.++.++..++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|+
T Consensus 137 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 137 KCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 8888877543 346778888888888888888888888753322 223467889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHH--H-HHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHH
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQ--L-YSEMKGSGITPDFEILSKLITSCSDEGELTLLVKE 262 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 262 (666)
+++|+++|+++.+.+ +.+...+..++..+...+..+.+.. + +..+...+..+..
T Consensus 216 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------- 272 (597)
T 2xpi_A 216 FDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR---------------------- 272 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH----------------------
T ss_pred HHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH----------------------
Confidence 999999999988765 4566677777766655444333222 1 4555443322222
Q ss_pred HHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHH
Q 038606 263 IWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDL 342 (666)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 342 (666)
..+..++..|.+.|++++|.++|+++... +++..++..++..|.+.|++++
T Consensus 273 -----------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 273 -----------SLYMLKLNKTSHEDELRRAEDYLSSINGL------------------EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp -----------HHHHTTSCTTTTHHHHHHHHHHHHTSTTG------------------GGCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------HHHHHHHHHHcCcchHHHHHHHHHHhhcC------------------CchHHHHHHHHHHHHHhcCHHH
Confidence 33444556677778888888888877642 4778888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 343 ALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRV 422 (666)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (666)
|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888888766 4567778888888888888888888888887653 55777888888888888888888888888877
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHH
Q 038606 423 QGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAY 502 (666)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 502 (666)
.. +.+..++..++..+.+.|++++|+.+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 54 4567788888888899999999999998888764 4477888889999999999999999999988763 5578889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHH
Q 038606 503 NIIISGLCKAQRVAEAEDLFNEMITK----GLIPS--VATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTL 576 (666)
Q Consensus 503 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 576 (666)
+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+..+ .+..+|..+
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l 556 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST--NDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--CCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHH
Confidence 99999999999999999999998876 56777 67899999999999999999999999988865 578889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 577 IDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGL 615 (666)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 615 (666)
+.+|...|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999999998863 33567776666655
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-40 Score=346.70 Aligned_cols=511 Identities=12% Similarity=-0.011 Sum_probs=413.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHH
Q 038606 76 LCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKAC 155 (666)
Q Consensus 76 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (666)
+...|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|+++....| +...+..++.++.+.|++++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-CchHHHHHHHHHHHcCcHHHHH
Confidence 455667777777666553 35788899999999999999999999999987766 5578889999999999999999
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC---------------CCCccHHHHHHHHHhhhccCC
Q 038606 156 ELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS---------------GFASDAAMYDVIIGGLCKNKQ 220 (666)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~ 220 (666)
.+|+++... +++..+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999999764 568899999999999999999999999953322 234579999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHH-HHH
Q 038606 221 LEMALQLYSEMKGSGITPD-FEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNL-LQA 298 (666)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~ 298 (666)
+++|.++|++|.+.+ |+ ...+..+...+...+... .+.+..+ +..
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~-------------------------------~~~~~~l~~~~ 262 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEE-------------------------------WDLVLKLNYST 262 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHH-------------------------------HHHHHHSCTHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhH-------------------------------HHHHHhcCCcc
Confidence 999999999999854 43 333333333332221111 0011111 233
Q ss_pred HHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 038606 299 MIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEES 378 (666)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 378 (666)
+...+ .......++.++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|
T Consensus 263 ~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 263 YSKED----------------AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp HHGGG----------------HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccch----------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHH
Confidence 33221 1334455667788899999999999999999876 58999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038606 379 YELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQE 458 (666)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 458 (666)
.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|..+|+++.+.
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998775 4477889999999999999999999999998664 667889999999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 038606 459 GFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYN 538 (666)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 538 (666)
. +.+..+++.++..|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|.
T Consensus 403 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 4 3467899999999999999999999999999874 5688899999999999999999999999999863 34788999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhcC---CCCCC--HHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038606 539 LLINGWCKSGNIDQAMLCLSRMLEKE---SGSPD--VITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALIT 613 (666)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 613 (666)
.++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 99999999999999999999998762 22566 7899999999999999999999999999874 557999999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038606 614 GLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFL 651 (666)
Q Consensus 614 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 651 (666)
+|.+.|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 9999999999999999999875 667888888887664
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.3e-30 Score=252.93 Aligned_cols=361 Identities=12% Similarity=0.046 Sum_probs=182.1
Q ss_pred hhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 3 SILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
..+-+.|++++|+..++.+.+.. |.++..+..++..+...|++++|...++.+.+.+ |.+..+|..++.++.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 33444555555555555554432 2244445555555555555555555555555544 44555555555555555555
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 83 DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 83 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
++|...|+++++..+. +..++..++.++.+.|++++|.+.|+++.+.+|.+..++..++..+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5555555555554322 334455555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHH
Q 038606 163 DCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEI 242 (666)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (666)
+.+ +.+..++..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++.... .|+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~-- 236 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH-- 236 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC--
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC--
Confidence 443 2234445555555555555555555555555443 333445555555555555555555555555442 1221
Q ss_pred HHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCC
Q 038606 243 LSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSP 322 (666)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (666)
..++..+..++...|++++|.+.|+++.... |.
T Consensus 237 ------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~ 269 (388)
T 1w3b_A 237 ------------------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-----------------PH 269 (388)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----------------SS
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------CC
Confidence 1334444455555555555555555555443 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038606 323 NTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFR 402 (666)
Q Consensus 323 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 402 (666)
+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 347 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44445555555555555555555555554443 3444455555555555555555555555554431 223444445555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 038606 403 CLCRRQDVVGALNLVRKMRV 422 (666)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~ 422 (666)
.+.+.|++++|...++++.+
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.7e-30 Score=251.58 Aligned_cols=364 Identities=15% Similarity=0.063 Sum_probs=287.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG 115 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (666)
++..+.+.|++++|.+.|..+.+.. |.+...+..+...+...|++++|...++.+++..+. +..++..++..|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 5677888999999999999999887 677888888999999999999999999999887544 7788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHH
Q 038606 116 QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDK 195 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (666)
++++|++.|+++....|.+..++..++.++...|++++|.+.|+++.+.++ .+...+..+...+...|++++|.+.|++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999888888999999999999999999999999988753 3556677788888889999999999999
Q ss_pred HHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccch
Q 038606 196 MTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLL 275 (666)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (666)
+.+.. +.+..+|..+...+...|++++|...|+++.+. .|+. ...
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~--------------------------------~~~ 205 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNF--------------------------------LDA 205 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTC--------------------------------HHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc--------------------------------HHH
Confidence 88764 556788899999999999999999999998874 3432 145
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038606 276 CNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGC 355 (666)
Q Consensus 276 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 355 (666)
+..+...+...|++++|...+++..... |.+..++..+...+...|++++|.+.|+++.+.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 267 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-----------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 6667777788888888888888777655 5567777777888888888888888888877755
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 038606 356 MQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLL 435 (666)
Q Consensus 356 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 435 (666)
+.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 345 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNL 345 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3456677777777777788888888877777653 4566677777777777777777777777766543 3344555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 038606 436 IKELCKHGKAMEAFRFLTDMVQE 458 (666)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~ 458 (666)
...+.+.|++++|...++++.+.
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666666666666554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.2e-28 Score=238.55 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=115.1
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC---------HHHHHH
Q 038606 451 FLTDMVQEGFLPDI-VCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQR---------VAEAED 520 (666)
Q Consensus 451 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 520 (666)
+.+.+.+.+..+.+ ..++.++++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|.+.+. .++|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 33344444333332 23455556666666666666666666666666666666666666554432 455666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038606 521 LFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKG 600 (666)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (666)
+|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.+. .||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666666666666655544 5666666666666666666666666666666666
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038606 601 CAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLS 652 (666)
Q Consensus 601 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 652 (666)
+.||..+|+.+|.+|++.|+.++|.+++++|++.++.|+..||..+...|..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666655543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.6e-27 Score=234.26 Aligned_cols=185 Identities=15% Similarity=0.213 Sum_probs=126.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC---------ChHHHHHHHHHHHhcCCCccHHHH
Q 038606 432 NTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIK---------RVDLALELFRDICAHGCCPDVVAY 502 (666)
Q Consensus 432 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 502 (666)
++.++.+|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.+ .++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44455555555555555555555555555566666666665555433 256677777777777777777777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHH
Q 038606 503 NIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCI 582 (666)
Q Consensus 503 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 582 (666)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+. .||..+|++|+.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~-~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV-VPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777777777777777777777766655 7777777777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038606 583 AGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCK 617 (666)
Q Consensus 583 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 617 (666)
.|+.++|.+++++|.+.|..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-24 Score=223.68 Aligned_cols=448 Identities=10% Similarity=-0.046 Sum_probs=281.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
.+.+...+..+.+.|++++|...|+++++.+ |+..+|..++.++.+.|++++|...|+++++.++. +..++..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHH
Confidence 4567788899999999999999999999886 58889999999999999999999999999987654 6778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
+|.+.|++++|+..|+++...++.+......++..+........+.+.+..+......|+......-.............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999999887666555555554444433333333332222111111111111000000011111111
Q ss_pred HHHHHHHHhCC---------CCccHHHHHHHHHhhhc---cCChhHHHHHHHHHHh-----CCCCCCHHHHHHHHHhhhc
Q 038606 190 LQLFDKMTKSG---------FASDAAMYDVIIGGLCK---NKQLEMALQLYSEMKG-----SGITPDFEILSKLITSCSD 252 (666)
Q Consensus 190 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~ 252 (666)
..+...+.... .+.+...+......+.. .|++++|..+|+++.+ ....|+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------- 233 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK-------- 233 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH--------
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC--------
Confidence 11111111110 02335555555555554 8999999999999987 42233321000
Q ss_pred cCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHH
Q 038606 253 EGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIIN 332 (666)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (666)
......+..+...+...|++++|...++.+.... +. ...+..+..
T Consensus 234 -----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------------~~-~~~~~~l~~ 278 (514)
T 2gw1_A 234 -----------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-----------------PR-VNSYIYMAL 278 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-----------------CC-HHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----------------cc-HHHHHHHHH
Confidence 0001456677777888888888888888877654 33 677777788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038606 333 TLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVG 412 (666)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 412 (666)
.+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888877654 4456677777777888888888888888877653 3355667777777777777777
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHc---cCChHHHH
Q 038606 413 ALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFL-PD----IVCYSAAIGGLID---IKRVDLAL 484 (666)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~ 484 (666)
|...++++.... +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .|+++.|.
T Consensus 357 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 777777776653 334455666666666666666666666666554211 01 1245555555555 56666666
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 038606 485 ELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK 528 (666)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 528 (666)
..++.+.... +.+..++..+...+.+.|++++|...|++..+.
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666555542 334455555555555555666665555555553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-25 Score=225.59 Aligned_cols=456 Identities=10% Similarity=-0.040 Sum_probs=270.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+...+...+..+.+.|++++|...|+++++.+ |++.++..++.++.+.|++++|+..++++.+.+|.+..++..++.+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 45678889999999999999999999999976 5888999999999999999999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHH
Q 038606 145 FSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMA 224 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 224 (666)
+...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----- 156 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE----- 156 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc-----
Confidence 9999999999999999998864 3444444455444443333334333333322221122111111100000011
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 038606 225 LQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVS---NGSIDQAYNLLQAMIK 301 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 301 (666)
..|+.......+..+...... .......+...+......+.. .|++++|...|+++..
T Consensus 157 -----------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 157 -----------NLPSVTSMASFFGIFKPELTF--------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC--------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred -----------CCchhHHHHHHHhhcCHHHHH--------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 112222222211111111000 000001112344444454554 8999999999999987
Q ss_pred -----C--CCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038606 302 -----G--EPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNR 374 (666)
Q Consensus 302 -----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 374 (666)
. .+... .. .+.+..++..+...+...|++++|...++++.+.. |+...+..+...+...|+
T Consensus 218 ~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 218 LFEEQLDKNNEDE-KL---------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHTTTSTTCH-HH---------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSC
T ss_pred HhhhhhccCcccc-cc---------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCC
Confidence 3 21000 00 02345567777788888888888888888887765 337777777788888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038606 375 LEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTD 454 (666)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 454 (666)
+++|...++++.+.. +.+..++..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.
T Consensus 286 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 286 STEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp CTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888877653 3355566666667777777777777776666543 22333444444444444555555444444
Q ss_pred HHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC
Q 038606 455 MVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLI-PS 533 (666)
Q Consensus 455 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~ 533 (666)
+.+.. +.+...+..+...+...|++++|...++++.+.... ++
T Consensus 364 ~~~~~------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 364 AKRKF------------------------------------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHS------------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHc------------------------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 44431 223344455555555555555555555555443111 01
Q ss_pred ----HHHHHHHHHHHHc---cCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038606 534 ----VATYNLLINGWCK---SGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK 599 (666)
Q Consensus 534 ----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (666)
...+..+..++.. .|++++|...++++....+ .+...+..+..+|...|++++|.+.++++.+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1255555555555 5666666666666555543 34445555666666666666666666666553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.1e-24 Score=214.40 Aligned_cols=326 Identities=12% Similarity=0.044 Sum_probs=210.2
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
++..+..++..+.+.|++++|..+|+.+++.. |.+..++..++.++...|++++|...|+++++.++. +..++..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 45555566666666666666666666666554 455556666666666666666666666666655433 445555556
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCc---hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDE---HVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
.+|.+.|++++|++.|+++...+|.++ .++..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 666666666666666666665555444 4444443331110 11122334556677
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHh
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWE 265 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 265 (666)
+++|+..|+++.+.. +.+...+..++.+|...|++++|..+|+++.+.. |+.
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~------------------------- 210 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDN------------------------- 210 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSC-------------------------
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC-------------------------
Confidence 777777777766554 4556667777777777777777777777766531 211
Q ss_pred hCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHH------------HHH
Q 038606 266 DRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDII------------INT 333 (666)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~ 333 (666)
...+..++.++...|++++|...|+++.... +.+...+..+ +..
T Consensus 211 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 211 -------TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----------------QDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1455666666777777777777777776554 3344444333 788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038606 334 LLKDGKLDLALSLFREMTQIGCMQN-----VFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQ 408 (666)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (666)
+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++++.+.. +.+..++..+..+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 889999999999999998765 43 3467788888999999999999999987763 447788899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 038606 409 DVVGALNLVRKMRVQGHEPWVKHNTLLI 436 (666)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 436 (666)
++++|...++++.+.. +.+...+..+.
T Consensus 344 ~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp CHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 9999999999988753 33444444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.1e-24 Score=217.28 Aligned_cols=332 Identities=13% Similarity=0.027 Sum_probs=232.7
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+..+.+.|++++|+.+++.++.. .|.++.++..++.++...|++++|...|+++++.+ |.+..++..++.+|.+.|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCC
Confidence 56778899999999999999875 45578999999999999999999999999999987 6788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDK---YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELI 158 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (666)
+++|...|+++.+.++. +. ..+..++..+... .+..++..+...|++++|...|
T Consensus 110 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ----------------------RLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987543 44 5566554441110 1222333444455555555555
Q ss_pred HHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCC
Q 038606 159 ERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITP 238 (666)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (666)
+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..++..|...|++++|...|+++... .|
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p 242 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ 242 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 5554432 2244445555555555555555555555554432 344555666666666666666666666666542 23
Q ss_pred CHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcC
Q 038606 239 DFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKG 318 (666)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (666)
+.......+.... . ......++..+...|++++|.+.|+++....
T Consensus 243 ~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------- 287 (450)
T 2y4t_A 243 DHKRCFAHYKQVK---K-----------------LNKLIESAEELIRDGRYTDATSKYESVMKTE--------------- 287 (450)
T ss_dssp TCHHHHHHHHHHH---H-----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred ChHHHHHHHHHHH---H-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 3221111110000 0 0223445778889999999999999998764
Q ss_pred CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 038606 319 TVSPN----TSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTH 394 (666)
Q Consensus 319 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 394 (666)
+.+ ...+..+...+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...++++.+.. +-+.
T Consensus 288 --p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 363 (450)
T 2y4t_A 288 --PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQ 363 (450)
T ss_dssp --CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCH
T ss_pred --CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchH
Confidence 333 3478888999999999999999999998765 5678999999999999999999999999998863 3355
Q ss_pred HHHHHHHH
Q 038606 395 FTLNSMFR 402 (666)
Q Consensus 395 ~~~~~l~~ 402 (666)
..+..+..
T Consensus 364 ~~~~~l~~ 371 (450)
T 2y4t_A 364 QIREGLEK 371 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=4.3e-24 Score=220.30 Aligned_cols=254 Identities=9% Similarity=-0.039 Sum_probs=204.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038606 338 GKLDLALSLFREMTQIGCMQNV-------FLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDV 410 (666)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 410 (666)
|++++|..+++++.+.. +.+. .++..+...+...|++++|...++++.+. .|+...+..+...+...|++
T Consensus 216 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCH
Confidence 57889999999988765 2332 34666777888899999999999999886 46678888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 038606 411 VGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDI 490 (666)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 490 (666)
+.|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 293 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988775 4567788888999999999999999999998874 335677888889999999999999999998
Q ss_pred HhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHcc----------CChhHHHH
Q 038606 491 CAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLI-----PSVATYNLLINGWCKS----------GNIDQAML 555 (666)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~a~~ 555 (666)
.+.. +.+...+..+...+...|++++|...++++.+.... .....+.....++... |++++|..
T Consensus 371 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 8763 556778888889999999999999999998765211 1122244445667777 99999999
Q ss_pred HHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038606 556 CLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK 599 (666)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (666)
.|+++.+..+ .+...+..+..+|...|++++|.+.|+++.+.
T Consensus 450 ~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988866 56678888999999999999999999998885
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.7e-23 Score=215.90 Aligned_cols=373 Identities=9% Similarity=0.004 Sum_probs=259.1
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
....+..++..+.+.|++++|...|+++++.+ |.+..++..++.++.+.|++++|...|+++++.++. +..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 46778899999999999999999999999987 788999999999999999999999999999998655 778888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--cchhhHHHHHHhhhccCCH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIR--LNEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 186 (666)
.++...|++++|+..|+ .....|... ...+..+...+...+|...++++....+. +........+..+....+.
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFD---GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999996 554443322 22344555666678899999988764211 0111112233344455666
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhhhc--------cCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHhhhccCcHH
Q 038606 187 DKALQLFDKMTKSGFASDAAMYDVIIGGLCK--------NKQLEMALQLYSEMKGSGITPDF-EILSKLITSCSDEGELT 257 (666)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 257 (666)
+.+...+....... +........+...+.. .|++++|..+|+++.+.. |+. .....+.
T Consensus 177 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~---------- 243 (537)
T 3fp2_A 177 HLEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAA---------- 243 (537)
T ss_dssp HHHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH----------
T ss_pred HHHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHH----------
Confidence 66655554433321 1112233333333332 247889999999998753 332 1111111
Q ss_pred HHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 038606 258 LLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKD 337 (666)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 337 (666)
.++..+...+...|++++|.+.++.+.... |+...+..+...+...
T Consensus 244 ----------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 244 ----------------LALCYTGIFHFLKNNLLDAQVLLQESINLH------------------PTPNSYIFLALTLADK 289 (537)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHTCCS
T ss_pred ----------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC------------------CCchHHHHHHHHHHHh
Confidence 345666777888888999999988888753 4477778888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038606 338 GKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLV 417 (666)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 417 (666)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 290 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887765 4567778888888888888888888888887763 335567777778888888888888888
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038606 418 RKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQE 458 (666)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 458 (666)
+++.... +.+...+..+...+...|++++|...++.+.+.
T Consensus 368 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 368 NETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8777664 445556666777777777777777777776654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=9.1e-22 Score=191.51 Aligned_cols=330 Identities=13% Similarity=0.061 Sum_probs=263.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
+++.+..++..+...|++++|...|+.+++.+ |.+..++..++.++...|++++|...|+++++.++. +...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence 35678889999999999999999999999987 678899999999999999999999999999987654 678888999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC---CCchHHHHH------------HHHHHhcCChhhHHHHHHHHhhCCCCcchhhH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGW---VDEHVFSIL------------LVAFSKWGEVDKACELIERMDDCNIRLNEKTF 173 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (666)
.++...|++++|...|+++.+..| .++..+..+ +..+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 999999999999999999999988 667777666 688999999999999999999875 3467888
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcc
Q 038606 174 CVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDE 253 (666)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 253 (666)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. |+.......+....
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~-- 232 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVK-- 232 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHH--
Confidence 899999999999999999999999875 6778899999999999999999999999998743 33221111110000
Q ss_pred CcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCH----HHHHH
Q 038606 254 GELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNT----SSFDI 329 (666)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 329 (666)
. ......+...+.+.|++++|...++.+.... +.+. ..+..
T Consensus 233 -~-----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 233 -K-----------------LNKLIESAEELIRDGRYTDATSKYESVMKTE-----------------PSVAEYTVRSKER 277 (359)
T ss_dssp -H-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------CSSHHHHHHHHHH
T ss_pred -H-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCchHHHHHHHHH
Confidence 0 0123344667888899999999998888765 3333 23445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038606 330 IINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCL 404 (666)
Q Consensus 330 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (666)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+.
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 6778888888888888888888765 4577788888888888888888888888888763 33455555554443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.4e-21 Score=188.48 Aligned_cols=316 Identities=13% Similarity=0.050 Sum_probs=266.1
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+..+.+.|++++|+..++.++... |.++.++..++.++...|++++|...|+++.+.. |.+...+..++.++...|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCC
Confidence 567788999999999999999854 4578999999999999999999999999999987 6788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCC--CCcccHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 82 VDLVEMRLKEMQDYGWG--YDKYTLTPL------------LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
+++|...|+++.+..+. .+...+..+ ...+...|++++|++.++++.+..|.++.++..++.++..
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999987551 144455544 5788899999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHH------------HHHHhh
Q 038606 148 WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYD------------VIIGGL 215 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~ 215 (666)
.|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.. +.+...+. .++..+
T Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 4577889999999999999999999999998764 34444443 236678
Q ss_pred hccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHH
Q 038606 216 CKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNL 295 (666)
Q Consensus 216 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 295 (666)
...|++++|...++++.+.. |+...+. ...+..+..++...|++++|.+.
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~----------------------------~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTE--PSVAEYT----------------------------VRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CSSHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCchHHH----------------------------HHHHHHHHHHHHHccCHHHHHHH
Confidence 89999999999999998853 3321110 03355678889999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038606 296 LQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLC 370 (666)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 370 (666)
++...... |.+..++..+...+...|++++|...|+++.+.. |.+...+..+..+..
T Consensus 295 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQME-----------------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHhC-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 99999875 6788899999999999999999999999999876 445666665555443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.2e-21 Score=185.17 Aligned_cols=302 Identities=10% Similarity=-0.039 Sum_probs=243.0
Q ss_pred hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH
Q 038606 25 RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL 104 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 104 (666)
+.+.+++++..++..+...|++++|.++|+++++.+ |.+...+..++.++...|++++|...++++.+..+. +...+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHH
Confidence 345688899999999999999999999999999987 678888999999999999999999999999997654 77889
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 105 TPLLQVYCNSG-QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 105 ~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
..+...+...| ++++|++.|+++....|.++.++..++.++...|++++|.+.++++.+..+ .+...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999998999999999999999999999999999998753 3566777789999999
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHH
Q 038606 184 SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEI 263 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 263 (666)
|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.......
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN----------------------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----------------------
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----------------------
Confidence 99999999999999876 667889999999999999999999999998763111000
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038606 264 WEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLA 343 (666)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 343 (666)
..........+..+..++...|++++|.+.+++..... +.+...+..+...+...|++++|
T Consensus 229 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 229 --EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----------------PQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp --SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----------------ccchHHHHHHHHHHHHhccHHHH
Confidence 00001112466677777777778888887777777654 55666777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC
Q 038606 344 LSLFREMTQIGCMQNVFLYNNLIDGL-CNSNR 374 (666)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 374 (666)
...|+++.+.. +.+...+..+..++ ...|+
T Consensus 290 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 290 VDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 77777776654 34566666666655 33443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.3e-18 Score=176.14 Aligned_cols=190 Identities=13% Similarity=-0.014 Sum_probs=97.8
Q ss_pred CcchHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCC
Q 038606 29 SPGALGFLIRCLGS----VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK----SCSVDLVEMRLKEMQDYGWGYD 100 (666)
Q Consensus 29 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 100 (666)
++..+..+...|.. .+++++|..+|+++.+.+ +..++..|+..|.. .+++++|..+|+++.+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 44555555555555 555555555555555532 44455555555555 555555555555555532 3
Q ss_pred cccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcchhh
Q 038606 101 KYTLTPLLQVYCN----SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK----WGEVDKACELIERMDDCNIRLNEKT 172 (666)
Q Consensus 101 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (666)
+..+..+...|.. .+++++|++.|+++...+ ++.++..++..|.. .+++++|.+.|++..+.+ +...
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3444445555554 455555555555555543 44455555555554 455555555555555542 3444
Q ss_pred HHHHHHhhhc----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc----cCChhHHHHHHHHHHh
Q 038606 173 FCVLIHGFVK----KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK----NKQLEMALQLYSEMKG 233 (666)
Q Consensus 173 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 233 (666)
+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4444444444 455555555555555432 33344444444443 4555555555555544
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=1.1e-16 Score=168.37 Aligned_cols=412 Identities=14% Similarity=0.140 Sum_probs=298.6
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGL-CVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
..+|+-.....++|...|.+.+|+++++++.-.+. |..+....+.++.+..+. +.....++.++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34688889999999999999999999999995431 224455666677776666 556666666665421 1 34
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
.+...+...|.+++|..+|++.. ....+... .+...|++++|.++.++.. ++.+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~V---Lie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD----VNTSAVQV---LIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHH---HHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 47778888999999999999863 11222222 2337788999999888663 46788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHh
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWE 265 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 265 (666)
+++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.+.-+|++.++.+. ++....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~fI~ 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEFIN 1191 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHHHh
Confidence 99999999663 567778889999999999999999998887754 443344457778888877774 333332
Q ss_pred hCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038606 266 DRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALS 345 (666)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 345 (666)
.++...+..+...+...|++++|..+|.... .|..+..++.+.|+++.|.+
T Consensus 1192 ----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------------------ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1192 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------------------------NFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------------------------HHHHHHHHHHHhCCHHHHHH
Confidence 2233566778899999999999999998742 58889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 038606 346 LFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGH 425 (666)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 425 (666)
.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+..+
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le- 1310 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE- 1310 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence 99876 45688888888999999988888766543 3356667788899999999999999998887665
Q ss_pred CCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHccCChHHHHHHHH---------
Q 038606 426 EPWVKHNTLLIKELCKH--GKAMEAFRFLTDMVQEGFLP------DIVCYSAAIGGLIDIKRVDLALELFR--------- 488 (666)
Q Consensus 426 ~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~--------- 488 (666)
+.....|+.+...+++. ++..++.++|..-.. +++ +...|..+...|.+.|+++.|....-
T Consensus 1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence 44556666666666654 334455555543322 122 35668888888999999998884322
Q ss_pred ----HHHhcCCCccHHHHHHHHHHHHccC
Q 038606 489 ----DICAHGCCPDVVAYNIIISGLCKAQ 513 (666)
Q Consensus 489 ----~~~~~~~~~~~~~~~~l~~~~~~~~ 513 (666)
.... ...++..|...+..|...+
T Consensus 1389 ~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1389 GQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 2222 2446777777777776544
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=3.8e-17 Score=171.90 Aligned_cols=386 Identities=14% Similarity=0.109 Sum_probs=216.5
Q ss_pred CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 038606 133 VDEHVFSILLVAFSKWGEVDKACELIERMDDCNI--RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDV 210 (666)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (666)
.+|.-......+|...|.+.+|+++++++.-.+- ..+...-+.++....+. +..+..++.++.... + ..-
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3566667777788888888888888888873311 12334444555555555 556666666555421 1 223
Q ss_pred HHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHH
Q 038606 211 IIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSID 290 (666)
Q Consensus 211 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 290 (666)
+...+...|.+++|..+|++... ++ .....++. ..+.++++.+...+. ....+|..+..++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~----~~-~A~~VLie---~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV----NT-SAVQVLIE---HIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC----HH-HHHHHHHH---HHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHH
Confidence 66777778888888888888631 11 11122211 333344333333222 12356666777777777777
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038606 291 QAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLC 370 (666)
Q Consensus 291 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 370 (666)
+|++.|.+ ..+...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|+
T Consensus 1123 EAIdsYiK----------------------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1123 EAIDSYIK----------------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHh----------------------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 77776644 3455566666677777777777777776665543 22222334666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 038606 371 NSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFR 450 (666)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 450 (666)
+.+++++..... + .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 666666433221 1 234455556666666777777777776664 256666666666677777766
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 038606 451 FLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGL 530 (666)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 530 (666)
.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++......
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le- 1310 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE- 1310 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence 66654 24566666666666666666666554432 2234445566666666777777777776665432
Q ss_pred CCCHHHHHHHHHHHHc--cCChhHHHHHHHHHHhcCC---CCCCHHhHHHHHHHHHHcCChhHHH
Q 038606 531 IPSVATYNLLINGWCK--SGNIDQAMLCLSRMLEKES---GSPDVITYTTLIDGLCIAGRPDDAI 590 (666)
Q Consensus 531 ~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 590 (666)
+-....|+.+...|++ .++..++.+.|..-....+ .--+...|..++..|.+.|+++.|.
T Consensus 1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1122344444444443 2334444444443222100 0013345666666666666766666
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=7.6e-18 Score=170.47 Aligned_cols=366 Identities=12% Similarity=0.021 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChh
Q 038606 47 EEANMLFDQVKREGLCVPNNYSYNCLLEALCK----SCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN----SGQFD 118 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 118 (666)
..+...+....+ +.+..++..++..|.. .+++++|..+|++..+.+ ++..+..+...|.. .++++
T Consensus 24 ~~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 24 NVNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp -CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 334566666665 3578888889998888 899999999999998863 56678888888888 88999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc----cCCHHHHH
Q 038606 119 KALSVFNEIIDHGWVDEHVFSILLVAFSK----WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK----KSRVDKAL 190 (666)
Q Consensus 119 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 190 (666)
+|.+.|+++.+.+ ++.++..++..|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 97 ~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 97 QAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999999988875 67788888888888 788999999999988865 45667777777766 77889999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHhhhc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhh
Q 038606 191 QLFDKMTKSGFASDAAMYDVIIGGLCK----NKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWED 266 (666)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (666)
+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.| +.
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~-------------------------- 219 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DE-------------------------- 219 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH--------------------------
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CH--------------------------
Confidence 9998888753 56777777777776 788888888888887753 22
Q ss_pred CCCCCccchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHh----cC
Q 038606 267 RDVNTMTLLCNSIMRILVS----NGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLK----DG 338 (666)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 338 (666)
..+..+...|.. .+++++|.++|++..+. .+..++..+...|.. .+
T Consensus 220 -------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------~~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 220 -------LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-------------------GNSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp -------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-------------------TCHHHHHHHHHHHHHTTTSSC
T ss_pred -------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHCCCCCCC
Confidence 334455555554 67888888888887763 344556666666666 67
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH
Q 038606 339 KLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNS-----NRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQ---DV 410 (666)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 410 (666)
+.++|..+|++..+.+ +...+..+...|... +++++|...|++..+.+ +...+..+...|...| ++
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 7888888887777643 455666666666665 67777777777777654 4455566666665544 56
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHH
Q 038606 411 VGALNLVRKMRVQGHEPWVKHNTLLIKELCK----HGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLID----IKRVDL 482 (666)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 482 (666)
++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+ ++..+..+...|.. .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 66666666666543 34455555555555 556666666666665543 34445555555554 555666
Q ss_pred HHHHHHHHHhcC
Q 038606 483 ALELFRDICAHG 494 (666)
Q Consensus 483 a~~~~~~~~~~~ 494 (666)
|...|++..+.+
T Consensus 422 A~~~~~~A~~~~ 433 (490)
T 2xm6_A 422 AWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 666665555543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3e-18 Score=175.26 Aligned_cols=401 Identities=10% Similarity=0.028 Sum_probs=232.6
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038606 18 AQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGW 97 (666)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 97 (666)
+++.++. .|.+...+..+++. .+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|+.+|+++++..
T Consensus 2 le~al~~-~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred hhhHhhh-CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 3444443 35578888888884 67889999999999999876 6788889999999999999999999999998864
Q ss_pred CCCcccHHHHHHHH-HhcCChhHHHH----HHHHHHHc---CCCCchHHHHHHHHHHh---------cCChhhHHHHHHH
Q 038606 98 GYDKYTLTPLLQVY-CNSGQFDKALS----VFNEIIDH---GWVDEHVFSILLVAFSK---------WGEVDKACELIER 160 (666)
Q Consensus 98 ~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 160 (666)
|+...|..++... ...|+++.|.+ +|+++... ++.+...|...+..... .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4666677666433 34577777665 67766553 23445667776665544 6777888888888
Q ss_pred HhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH------hC
Q 038606 161 MDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK------GS 234 (666)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~ 234 (666)
+++.........|..........|. .+...++. .+.++++.|..++++.. +.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7773111111222221111000000 01111111 12345666766666532 11
Q ss_pred C---CCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHh----cCCH----HHHHHHHHHHHhCC
Q 038606 235 G---ITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVS----NGSI----DQAYNLLQAMIKGE 303 (666)
Q Consensus 235 ~---~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~----~~A~~~~~~~~~~~ 303 (666)
. +.|+.. ..... ....|...+..... .++. ..+..+|++.....
T Consensus 214 ~~~~~~p~~~------------~~~~~-------------~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~ 268 (530)
T 2ooe_A 214 NAPSVPPQNT------------PQEAQ-------------QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL 268 (530)
T ss_dssp SSCCCCCC--------------CCHHH-------------HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCC------------hhHHH-------------HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC
Confidence 1 122210 00000 00122222222111 1222 46778888888765
Q ss_pred CCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 304 PIADVGVEMLMIFKGTVSPNTSSFDIIINTLLK-------DGKLD-------LALSLFREMTQIGCMQNVFLYNNLIDGL 369 (666)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 369 (666)
|.+...|..++..+.+ .|+++ +|..+|++..+.-.|.+...|..++..+
T Consensus 269 -----------------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 269 -----------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6788888888888775 78887 8888998888632355688888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHH-HHHhcCCHH
Q 038606 370 CNSNRLEESYELLREMEESGFKPT-H-FTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIK-ELCKHGKAM 446 (666)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 446 (666)
.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+++.|..+|++..+.. +.....+...+. .+...|+.+
T Consensus 332 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHH
T ss_pred HhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChh
Confidence 8889999999999988875 443 2 467777777777777777777777776542 111111111111 112344444
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 038606 447 EAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICA 492 (666)
Q Consensus 447 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 492 (666)
+|..+|+...+.. +.++..+..++..+.+.|+.+.|..+|++...
T Consensus 409 ~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 409 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 4444444444431 11233344444444444444444444444443
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.5e-20 Score=175.58 Aligned_cols=284 Identities=10% Similarity=-0.046 Sum_probs=246.6
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC-
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC- 80 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 80 (666)
|..+...|++++|+.+++.++... |.++..+..++.++...|++++|..+|+++.+.. |.+..++..++..+...|
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhh
Confidence 456677899999999999999855 5578889999999999999999999999999987 678899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHH
Q 038606 81 SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIER 160 (666)
Q Consensus 81 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (666)
++++|...|+++.+.++. +...+..+...+...|++++|++.|+++.+..|.+...+..++..+...|++++|.+.+++
T Consensus 106 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999987654 6788999999999999999999999999999988889999999999999999999999999
Q ss_pred HhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCC--------CCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 161 MDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG--------FASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
+.+.. +.+...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|++++|...++++.
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99876 4467889999999999999999999999987631 13446789999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHH
Q 038606 233 GSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEM 312 (666)
Q Consensus 233 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (666)
+.. |+. ...+..+..++...|++++|.+.+++..+..
T Consensus 264 ~~~--~~~--------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 300 (330)
T 3hym_B 264 VLI--PQN--------------------------------ASTYSAIGYIHSLMGNFENAVDYFHTALGLR--------- 300 (330)
T ss_dssp HHS--TTC--------------------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---------
T ss_pred hhC--ccc--------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHccC---------
Confidence 753 321 2567888999999999999999999998876
Q ss_pred HHhhcCCCCCCHHHHHHHHHHH-HhcCChH
Q 038606 313 LMIFKGTVSPNTSSFDIIINTL-LKDGKLD 341 (666)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 341 (666)
|.+...+..+..++ ...|+.+
T Consensus 301 --------p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 --------RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp --------SCCHHHHHHHHHHHHTTTTC--
T ss_pred --------CCchHHHHHHHHHHHHHhCchh
Confidence 66778888888877 4555543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.2e-20 Score=184.13 Aligned_cols=213 Identities=9% Similarity=-0.016 Sum_probs=123.4
Q ss_pred HhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHH-HHHHHHHcCCCCC--ChhhHHHHHHHHHhcCChh
Q 038606 7 RARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANM-LFDQVKREGLCVP--NNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 83 (666)
..+.|..+...|+.+.+.++. ++...|++++|.. .|+++.+.....| +...+..++..+.+.|+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE-----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred CcccHHHHHHHHHHHHcCCch-----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 345566666666655554321 3444578888888 8887766542112 3467888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
+|...|+++++.++. +..++..+..++...|++++|+..|+++.+.+|.++.++..++.++...|++++|.+.++++..
T Consensus 82 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 82 NAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887554 6778888888899999999999999999888888888899999999999999999999999888
Q ss_pred CCCCcchhhHHH---------------HHHhhhccCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHHhhhccCChhHHHH
Q 038606 164 CNIRLNEKTFCV---------------LIHGFVKKSRVDKALQLFDKMTKSGFAS--DAAMYDVIIGGLCKNKQLEMALQ 226 (666)
Q Consensus 164 ~~~~~~~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 226 (666)
..+. +...+.. .+..+...|++++|...|+++.+.. +. +..++..++..+...|++++|..
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVD 238 (368)
T ss_dssp TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6533 2222211 1122224555555555555555432 11 34455555555555555555555
Q ss_pred HHHHHHh
Q 038606 227 LYSEMKG 233 (666)
Q Consensus 227 ~~~~~~~ 233 (666)
.|+++..
T Consensus 239 ~~~~al~ 245 (368)
T 1fch_A 239 CFTAALS 245 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=5.2e-18 Score=173.52 Aligned_cols=432 Identities=12% Similarity=0.041 Sum_probs=237.3
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCc
Q 038606 124 FNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFAS 203 (666)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 203 (666)
|++.++.+|.+..+|..++.. .+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++.+.. |
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 445555566666666666653 55666666666666666653 3355566666666666677777777777666553 4
Q ss_pred cHHHHHHHHHhh-hccCChhHHHH----HHHHHHh-CCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHH
Q 038606 204 DAAMYDVIIGGL-CKNKQLEMALQ----LYSEMKG-SGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCN 277 (666)
Q Consensus 204 ~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (666)
+...|..++... ...|+.+.|.+ +|++... .|..|+. ...|.
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~--------------------------------~~~w~ 125 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS--------------------------------YQIWV 125 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC--------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc--------------------------------HHHHH
Confidence 555665555422 23455555544 5555543 2433321 12333
Q ss_pred HHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038606 278 SIMRILV---------SNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFR 348 (666)
Q Consensus 278 ~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 348 (666)
..+.... +.|+++.|..+|++.... +. .+....|..........|. ..+..++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~---------------~~~~~~~~~~~~~e~~~~~-~~~~~~l~ 188 (530)
T 2ooe_A 126 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PM---------------INIEQLWRDYNKYEEGINI-HLAKKMIE 188 (530)
T ss_dssp HHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CC---------------TTHHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hh---------------hhHHHHHHHHHHHHHhhch-hHHHHHHH
Confidence 3333332 367899999999998872 10 1111222222211100010 00000000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHhc----
Q 038606 349 EMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREM------EESG---FKPT--------HFTLNSMFRCLCRR---- 407 (666)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~---- 407 (666)
...+++..|..+++.+ .+.. ++|+ ...|...+......
T Consensus 189 ---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 189 ---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred ---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 0112233333333321 1110 1222 12333333222111
Q ss_pred CCH----HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCChhhHHH
Q 038606 408 QDV----VGALNLVRKMRVQGHEPWVKHNTLLIKELCK-------HGKAM-------EAFRFLTDMVQEGFLPDIVCYSA 469 (666)
Q Consensus 408 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 469 (666)
++. ..+..+|+++.... +.+...|..++..+.+ .|+.+ +|..++++..+.-.+.+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 122 25556666666542 4455566666665554 56655 67777777765212334666677
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcc
Q 038606 470 AIGGLIDIKRVDLALELFRDICAHGCCPDV-VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLING-WCKS 547 (666)
Q Consensus 470 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 547 (666)
++..+.+.|+++.|..+|+++.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 7777777777777777777777642 2222 467777777777777788888887777652 1122233222222 3357
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCChhHH
Q 038606 548 GNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKG-CAPN--RITFMALITGLCKCDRPRAA 624 (666)
Q Consensus 548 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A 624 (666)
|++++|..+|++..+..| .+...|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+......|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 778888888887777655 455677777777777788888888888877652 1222 34666667766777888888
Q ss_pred HHHHHHHHHc
Q 038606 625 LVHFRMMKEK 634 (666)
Q Consensus 625 ~~~~~~~~~~ 634 (666)
..+.+++.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=4.6e-20 Score=180.04 Aligned_cols=297 Identities=12% Similarity=0.008 Sum_probs=233.6
Q ss_pred hhhhchHHH-HHHHHhhhhc---CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 8 ARRIAPLRV-LAQDVVKSRC---FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
.|+++.|.. .++......+ ..+...+..++..+...|++++|...|+++++.+ |.+..++..++.++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence 355666666 6655444322 2246778999999999999999999999999987 788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHH----------------HHHHHHHh
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFS----------------ILLVAFSK 147 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 147 (666)
+|...|+++++.++. +..++..++..|...|++++|++.|+++....|.+...+. .+...+ .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 999999999998654 7888999999999999999999999999999887666554 234444 8
Q ss_pred cCChhhHHHHHHHHhhCCCCc-chhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHH
Q 038606 148 WGEVDKACELIERMDDCNIRL-NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQ 226 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 226 (666)
.|++++|...|+++.+.++.. +..++..+...+...|++++|+..|+++.+.. +.+...|..++..+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999875332 57888999999999999999999999998765 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038606 227 LYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIA 306 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 306 (666)
.|+++.+. .|+. ...+..+..++.+.|++++|...|+++....+..
T Consensus 273 ~~~~al~~--~~~~--------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 273 AYRRALEL--QPGY--------------------------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHH--CTTC--------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh--CCCc--------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999874 3432 1567888899999999999999999988654110
Q ss_pred chhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038606 307 DVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFRE 349 (666)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 349 (666)
... .....+....++..+..++...|+.++|..++.+
T Consensus 319 ~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 319 RGP------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCc------cccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 000 0000011267788888888888888888877653
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=8.4e-20 Score=177.79 Aligned_cols=279 Identities=10% Similarity=-0.006 Sum_probs=220.0
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
.+...+..++..+.+.|++++|...|+++++.. |.+..+|..++.++...|++++|...|+++++.++. +..++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMAL 139 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 345669999999999999999999999999987 788999999999999999999999999999998654 78889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHH----------HHHHHHHhcCChhhHHHHHHHHhhCCCCc-chhhHHHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFS----------ILLVAFSKWGEVDKACELIERMDDCNIRL-NEKTFCVL 176 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 176 (666)
+.+|...|++++|+..|+++.+..|.++..+. .++..+...|++++|.+.|+++.+.++.. +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999999988765444443 34889999999999999999999875331 67889999
Q ss_pred HHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcH
Q 038606 177 IHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGEL 256 (666)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 256 (666)
...+...|++++|++.|+++.+.. +.+..+|..++.+|...|++++|...|+++.+. .|+.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~---------------- 280 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGF---------------- 280 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc----------------
Confidence 999999999999999999998875 567889999999999999999999999999874 3432
Q ss_pred HHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 038606 257 TLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLK 336 (666)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (666)
..++..+..++...|++++|...|+++....+....... ......+...+..+..++..
T Consensus 281 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 281 ----------------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ-----VPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp ----------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc-----cchhhhHHHHHHHHHHHHHH
Confidence 156788889999999999999999998865421100000 00001135567777777777
Q ss_pred cCChHHHHHHHHH
Q 038606 337 DGKLDLALSLFRE 349 (666)
Q Consensus 337 ~g~~~~a~~~~~~ 349 (666)
.|+.+.+..+..+
T Consensus 340 ~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 340 MDQPELFQAANLG 352 (365)
T ss_dssp HTCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHh
Confidence 7777777666543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=7.4e-20 Score=178.18 Aligned_cols=234 Identities=11% Similarity=0.017 Sum_probs=157.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+...+..++..+.+.|++++|...|+++++..+. +..++..++.+|...|++++|+..|+++...+|.++.++..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4456888888888889999999999888887654 677888888888888888899888888888888888888888888
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcchhhH----------HHHHHhhhccCCHHHHHHHHHHHHhCCCCc--cHHHHHHHH
Q 038606 145 FSKWGEVDKACELIERMDDCNIRLNEKTF----------CVLIHGFVKKSRVDKALQLFDKMTKSGFAS--DAAMYDVII 212 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 212 (666)
+...|++++|...|+++.+..+. +...+ ..+...+...|++++|+..|+++.+.. +. +..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 88888888888888888875321 22222 223556666777777777777766653 22 466666667
Q ss_pred HhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHH
Q 038606 213 GGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQA 292 (666)
Q Consensus 213 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 292 (666)
..|...|++++|...|+++.+.. |+. ..++..+..++...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~--------------------------------~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PED--------------------------------YSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTC--------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCC--------------------------------HHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777666532 221 13455556666666666666
Q ss_pred HHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 293 YNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
...|+++.... |.+..++..+..++...|++++|...|+++.+
T Consensus 267 ~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 267 VEAYTRALEIQ-----------------PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666665543 44455566666666666666666666665544
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.3e-18 Score=172.18 Aligned_cols=207 Identities=9% Similarity=-0.011 Sum_probs=156.2
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKRE-------GLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGW- 97 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 97 (666)
.+.....|+.++..+...|++++|++.|+++++. ...+....+|..++.+|...|++++|...|+++.+...
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445667899999999999999999999998753 01134567899999999999999999999998876311
Q ss_pred --C---C-CcccHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCchHHHHHHHHH---HhcCChhhHHHHHHHHhhCCC
Q 038606 98 --G---Y-DKYTLTPLLQVYCN--SGQFDKALSVFNEIIDHGWVDEHVFSILLVAF---SKWGEVDKACELIERMDDCNI 166 (666)
Q Consensus 98 --~---~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~ 166 (666)
. + .+.++.....++.. .+++++|++.|+++...+|.++.++..++.++ ...++.++|++.++++++.++
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 1 23445555544544 45799999999999999999998887777664 456788999999999988753
Q ss_pred CcchhhHHHHHHh----hhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 167 RLNEKTFCVLIHG----FVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 167 ~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.+..++..+... +...|++++|.+.+++..... +.+...+..+...|...|++++|...++++.+.
T Consensus 207 -~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 207 -DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp -SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 345555544433 344678899999999988765 667888999999999999999999999999875
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=6.2e-19 Score=168.88 Aligned_cols=279 Identities=14% Similarity=0.046 Sum_probs=227.2
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
.+...+..++..+...|++++|..+|+++.+.. |.+..++..++.++...|++++|...|+++.+..+. +..++..+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 95 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAAL 95 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHH
Confidence 356778899999999999999999999999987 678899999999999999999999999999997654 77888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHH--------------HH-HHHhcCChhhHHHHHHHHhhCCCCcchhh
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSIL--------------LV-AFSKWGEVDKACELIERMDDCNIRLNEKT 172 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (666)
...+...|++++|.+.++++....|.+...+..+ .. .+...|++++|.+.++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999999999988777666655 44 5888999999999999999875 346788
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhc
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSD 252 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 252 (666)
+..+...+...|++++|.+.++++.+.. +.+...|..++..+...|++++|...|+++.+.. |+.
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------ 239 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGY------------ 239 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC------------
Confidence 8999999999999999999999998765 5678889999999999999999999999998743 332
Q ss_pred cCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHH
Q 038606 253 EGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIIN 332 (666)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 332 (666)
...+..+..++...|++++|.+.++++....+....... ......+...+..+..
T Consensus 240 --------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 240 --------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG-----EASREATRSMWDFFRM 294 (327)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----------CCTHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc-----cchhhcCHHHHHHHHH
Confidence 156778888999999999999999998875421000000 0000005677888888
Q ss_pred HHHhcCChHHHHHHHHHH
Q 038606 333 TLLKDGKLDLALSLFREM 350 (666)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~ 350 (666)
++...|++++|..++++.
T Consensus 295 ~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHTTCC
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 888899998888887654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.9e-18 Score=165.47 Aligned_cols=270 Identities=8% Similarity=-0.027 Sum_probs=222.3
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+..+.+.|++++|+.+++.+++.. |.++.++..++.++...|++++|.+.|+++.+.+ |.+..++..++..+...|+
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCC
Confidence 456778899999999999999865 4478889999999999999999999999999987 6788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPL--------------LQ-VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
+++|...|+++.+..+. +...+..+ .. .+...|++++|.+.++++.+..|.++.++..++..+.
T Consensus 105 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999999987554 44444444 33 4778899999999999999999988999999999999
Q ss_pred hcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHH
Q 038606 147 KWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQ 226 (666)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 226 (666)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999875 3467788999999999999999999999988765 5678889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038606 227 LYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAM 299 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 299 (666)
.|+++...........-. .........+..+..++...|++++|..+++..
T Consensus 262 ~~~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGE----------------------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHTTSCC---------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhCCcccccccc----------------------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999998743221000000 000001256778889999999999999988643
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.4e-18 Score=154.32 Aligned_cols=201 Identities=16% Similarity=0.052 Sum_probs=172.0
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
|.++..+..++..+...|++++|...|+++++.+ |.+...+..++.++.+.|++++|...|+++++.++. +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 6788999999999999999999999999999988 788999999999999999999999999999998765 7788899
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHH
Q 038606 107 LLQVYCNS-----------GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCV 175 (666)
Q Consensus 107 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 175 (666)
+..++... |++++|+..|+++.+.+|.++.++..++.++...|++++|+..|+++++.+ .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999999987 67888999
Q ss_pred HHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 176 LIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
+..++...|++++|+..|++..+.. |.+...+..+...+...|++++|...|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999998875 66788899999999999999999999987653
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.1e-17 Score=164.23 Aligned_cols=383 Identities=10% Similarity=-0.022 Sum_probs=228.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----C---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY-----G---WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH----- 130 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 130 (666)
.....|+.|+..+...|++++|.+.|+++++. + .+....+|..+..+|...|++++|...++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999998653 1 1123457888999999999999999999988653
Q ss_pred ---CCCCchHHHHHHHHHHhc--CChhhHHHHHHHHhhCCCCcchhhHHHHHHh---hhccCCHHHHHHHHHHHHhCCCC
Q 038606 131 ---GWVDEHVFSILLVAFSKW--GEVDKACELIERMDDCNIRLNEKTFCVLIHG---FVKKSRVDKALQLFDKMTKSGFA 202 (666)
Q Consensus 131 ---~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~ 202 (666)
++..+.++..++.++... +++++|++.|+++++.++ .++..+..+..+ +...++.++|++.+++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 123445676666666554 579999999999998753 245555555444 345678889999999988765 5
Q ss_pred ccHHHHHHHHHhhh----ccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHH
Q 038606 203 SDAAMYDVIIGGLC----KNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNS 278 (666)
Q Consensus 203 ~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (666)
.+...+..+...+. ..|++++|.+++++..... |+. ..++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~--------------------------------~~~~~~ 252 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGV--------------------------------TDVLRS 252 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSC--------------------------------HHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccH--------------------------------HHHHHH
Confidence 56666766655444 4567889999999987743 332 156778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038606 279 IMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQN 358 (666)
Q Consensus 279 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (666)
+...|...|++++|.+.+++..+.. |.+..++..+..+|...+.... ... .
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~y~~~~~~~~---------~~~--~- 303 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYI-----------------PNNAYLHCQIGCCYRAKVFQVM---------NLR--E- 303 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHHHHHHHH---------HC-----
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhC-----------------CChHHHHHHHHHHHHHHHHHhh---------hHH--H-
Confidence 8899999999999999999998876 6677777777666543211100 000 0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchh--hHHHHH
Q 038606 359 VFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVK--HNTLLI 436 (666)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~ 436 (666)
..........+..+.|...+++..+.. +.+..++..+...+...|++++|...|+++......+... .+..+.
T Consensus 304 ----~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 304 ----NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378 (472)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 000000111122455666666555442 2234445556666666666666666666666543222211 111122
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCH
Q 038606 437 K-ELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRV 515 (666)
Q Consensus 437 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (666)
. .....|+.++|+..|++..+. .|+..... +....+.++++.....+ +.+..+|..+...|...|++
T Consensus 379 ~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 379 NFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 1 223456666677766666654 23322111 11223344444444442 44566677777777777777
Q ss_pred HHHHHHHHHHHHC
Q 038606 516 AEAEDLFNEMITK 528 (666)
Q Consensus 516 ~~a~~~~~~~~~~ 528 (666)
++|++.|++.++.
T Consensus 447 ~~A~~~y~kALe~ 459 (472)
T 4g1t_A 447 QQADEDSERGLES 459 (472)
T ss_dssp C------------
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777665
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=6.6e-18 Score=159.13 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=51.3
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
++...|+.++|.+.++++ ..|.+|..+++++.+.|++++|.+.|.+ .+|..+|..++.++...|+++
T Consensus 12 ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHH
Confidence 456667777777777666 1245777777777777777777777743 245557777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
+|+.+++...+. .+++.+.+.++.+|.+.|+++++.++++. | +..+|..++..|...|.+++|...|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 777766666553 23456666777777777777777666632 2 3346777777777777777777777755
Q ss_pred CCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHH
Q 038606 164 CNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYS 229 (666)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 229 (666)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|.....
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 25667777777777777777777765 255677777777777777777744433
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.3e-17 Score=154.85 Aligned_cols=252 Identities=12% Similarity=0.033 Sum_probs=206.1
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhH
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDL 84 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (666)
+--.|+...|+...+.+...++..+.+....++++|...|+++.|+..++. .+ +|+..++..++..+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCCCcHHH
Confidence 445688999999988877655444456667889999999999999987755 23 6788899999999999999999
Q ss_pred HHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 85 VEMRLKEMQDYGWGY-DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 85 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
|.+.+++++..+..| ++..+..+..++...|++++|++.+++ +.++.++..++.++.+.|++++|.+.|+++.+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999998875333 566777888999999999999999988 56788999999999999999999999999998
Q ss_pred CCCCcchhhH---HHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH
Q 038606 164 CNIRLNEKTF---CVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF 240 (666)
Q Consensus 164 ~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 240 (666)
.+ |+.... ...+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|...|+++.+. .|+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~ 233 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGH 233 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 75 333211 223344556699999999999999874 678899999999999999999999999999875 3432
Q ss_pred HHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 038606 241 EILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQ-AYNLLQAMIKGE 303 (666)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~ 303 (666)
..++..++..+...|+.++ +.++++++.+..
T Consensus 234 --------------------------------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 234 --------------------------------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --------------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2567778888888898875 678999988765
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=3.7e-16 Score=145.02 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=159.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 038606 369 LCNSNRLEESYELLREMEESGFKPTH--FTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAM 446 (666)
Q Consensus 369 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (666)
....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33456666666655554332 2222 2334455566666666666654433 12444555555666666666666
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038606 447 EAFRFLTDMVQEGFLP-DIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEM 525 (666)
Q Consensus 447 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 525 (666)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554323 344455555666677777777776665 345666666677777777777777777777
Q ss_pred HHCCCCCCHHHH---HHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 038606 526 ITKGLIPSVATY---NLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCA 602 (666)
Q Consensus 526 ~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 602 (666)
.+.. |+.... ...+..+...|++++|..+|+++.+..| .+...++.+..++.+.|++++|.+.++++.+.. +
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 6652 332211 1222333445677777777777777655 566677777777777777777777777776652 3
Q ss_pred CCHHHHHHHHHHHHccCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038606 603 PNRITFMALITGLCKCDRPRA-ALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEV 662 (666)
Q Consensus 603 p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 662 (666)
.++.++..++..+...|+.++ +.++++++.+.+ |.++.+ .+...+.+.++++..-
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHHH
Confidence 356677777777777777754 456777776553 333322 2234455555555443
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1.9e-16 Score=147.03 Aligned_cols=242 Identities=13% Similarity=0.033 Sum_probs=200.4
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccc----H
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYT----L 104 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~ 104 (666)
+++++...+..+...|++++|...|+++++.+ |.+...+..++.++...|++++|...|+++.+.. +++.. +
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~ 77 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADF 77 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHH
Confidence 57788999999999999999999999999987 6778899999999999999999999999999843 23333 7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
..+...+...|++++|++.|+++.+.+|.++.++..++.++...|++++|.+.|+++.+.. +.+...+..+...+...+
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999874 346667777772334456
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCC---hhHHHHHHHHHHhCC-CCCCHHHHHHHHHhhhccCcHHHHH
Q 038606 185 RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQ---LEMALQLYSEMKGSG-ITPDFEILSKLITSCSDEGELTLLV 260 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~ 260 (666)
++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...|+++.+.. ..|+.. ...+
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~-------------- 220 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDEL-------------- 220 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHH--------------
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHH--------------
Confidence 9999999999998875 5567788888888888888 888999998887631 112210 0000
Q ss_pred HHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 261 KEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
..++..+...|...|++++|.+.++++....
T Consensus 221 ------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 221 ------------IEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1456778889999999999999999999876
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=2.8e-16 Score=156.09 Aligned_cols=345 Identities=14% Similarity=0.070 Sum_probs=166.1
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLV---EEANMLFDQVKREGLCVPNNYSYNCLLEALCK 78 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (666)
|.++.+.|++++|...++.+...+ ++.++..++..|...|+. ++|..+|+++.+ . ++..+..++..+..
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~-~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----T-SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----C-CHHHHHHHHHHHHh
Confidence 344556667777777776666554 455555666666666666 667777766664 2 44556666664444
Q ss_pred cC-----ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC
Q 038606 79 SC-----SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFD---KALSVFNEIIDHGWVDEHVFSILLVAFSKWGE 150 (666)
Q Consensus 79 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (666)
.| ++++|..+|++..+.|. +..+..+...|...+... ++.+.+......+ ++.+...++..|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC
Confidence 44 55667777776666432 235555666665544332 3333344333333 45566666666666664
Q ss_pred hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC---CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcc----CChhH
Q 038606 151 VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS---RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKN----KQLEM 223 (666)
Q Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 223 (666)
++++........+.-...++..+..+...|.+.| +.++|++.|++..+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444433222221111122335555666666666 6666666666666665 44454444455555433 56666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 038606 224 ALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRI-L--VSNGSIDQAYNLLQAMI 300 (666)
Q Consensus 224 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~ 300 (666)
|..+|++.. .| +. ..+..+... + ...+++++|.+.|++..
T Consensus 236 A~~~~~~aa-~g---~~---------------------------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 236 AQALLEKIA-PG---YP---------------------------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHG-GG---ST---------------------------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CC---CH---------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 666666654 21 11 233334433 2 34566666666666665
Q ss_pred hCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 038606 301 KGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDG-----KLDLALSLFREMTQIGCMQNVFLYNNLIDGLCN---- 371 (666)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 371 (666)
+. .+..++..+...|. .| ++++|..+|++.. +.++..+..|...|..
T Consensus 279 ~~-------------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 279 AA-------------------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp HT-------------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTS
T ss_pred HC-------------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCC
Confidence 42 24445555555554 33 6666666666555 2345555555555544
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 038606 372 SNRLEESYELLREMEESGFKPTHFTLNSMFRCLCR----RQDVVGALNLVRKMRVQG 424 (666)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 424 (666)
..++++|...|++..+.| +......+...|.. ..+...|...|+...+.|
T Consensus 335 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 235666666666665544 22233334444432 235555555555555444
No 37
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.1e-15 Score=144.03 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=10.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc
Q 038606 103 TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK 182 (666)
Q Consensus 103 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (666)
+|..++.++.+.|++++|++.|.+. .++..|..++..+...|++++|+.+++...+. .+++.+.+.++.+|.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHH
Confidence 4444444444444444444444321 12333444444444444444444444333332 2223444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHH
Q 038606 183 KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSE 230 (666)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 230 (666)
.|+++++.++++ .|+..+|..++..|...|.+++|..+|..
T Consensus 107 lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 107 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp --CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444442 13334444444444444555555444443
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=2.5e-16 Score=150.94 Aligned_cols=250 Identities=10% Similarity=0.030 Sum_probs=212.0
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS-VDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
...++..+..++...|++++|+..|+++++.+ |.+..+|..++.++...|+ +++|...|+++++.++. +..+|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 45678899999999999999999999999998 7889999999999999997 99999999999998766 88899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc-cCCH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK-KSRV 186 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 186 (666)
..++...|++++|+..|++++..+|.+..+|..++.++...|++++|+..++++++.++ .+...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999864 478889999998888 6665
Q ss_pred HHH-----HHHHHHHHhCCCCccHHHHHHHHHhhhccC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHH
Q 038606 187 DKA-----LQLFDKMTKSGFASDAAMYDVIIGGLCKNK--QLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLL 259 (666)
Q Consensus 187 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 259 (666)
++| ++.|++..+.. +.+...|+.+...+...| ++++|.+.+.++ + ..|+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~------------------- 308 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSS------------------- 308 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCC-------------------
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCC-------------------
Confidence 777 58899888765 567889999999998888 689999999888 3 34443
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCchhHHHHHhhcCCCCCCHHHHHH
Q 038606 260 VKEIWEDRDVNTMTLLCNSIMRILVSNG---------SIDQAYNLLQAM-IKGEPIADVGVEMLMIFKGTVSPNTSSFDI 329 (666)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (666)
...+..++.+|.+.| ..++|+++|+++ .+.+ |.....|..
T Consensus 309 -------------~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-----------------P~r~~~w~~ 358 (382)
T 2h6f_A 309 -------------PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-----------------TIRKEYWRY 358 (382)
T ss_dssp -------------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-----------------GGGHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-----------------chhHHHHHH
Confidence 145566666676653 258999999999 7765 555566666
Q ss_pred HHHHHH
Q 038606 330 IINTLL 335 (666)
Q Consensus 330 l~~~~~ 335 (666)
+...+.
T Consensus 359 ~~~~l~ 364 (382)
T 2h6f_A 359 IGRSLQ 364 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=5.5e-16 Score=153.98 Aligned_cols=350 Identities=10% Similarity=0.001 Sum_probs=173.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV---DLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.++..+.+.|++++|.++|+++.+.+ +..++..|+..|...|++ ++|..+|+++.+. ++..+..+..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 45666777777777777777776643 445555666666666766 6777777777653 444555555544
Q ss_pred HhcC-----ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH
Q 038606 112 CNSG-----QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 112 ~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 186 (666)
...+ ++++|...|++....+ ++.++..++..|...+..+++.+
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~------------------------------ 127 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVN------------------------------ 127 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCC------------------------------
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHH------------------------------
Confidence 4433 5667777777766654 33456666666665544333222
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhh
Q 038606 187 DKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWED 266 (666)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (666)
+.+.+......| +...+..+...|...+.++++......+.+.....+.
T Consensus 128 --a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~-------------------------- 176 (452)
T 3e4b_A 128 --AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD-------------------------- 176 (452)
T ss_dssp --HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT--------------------------
T ss_pred --HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH--------------------------
Confidence 222222222211 1222333333444334333222221111110000111
Q ss_pred CCCCCccchHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhc----CC
Q 038606 267 RDVNTMTLLCNSIMRILVSNG---SIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKD----GK 339 (666)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 339 (666)
..+..+..+|...| +.++|++.|++....+ +++...+..+...|... ++
T Consensus 177 -------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-----------------~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 177 -------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-----------------TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp -------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------------CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred -------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHHhCCCCCCCC
Confidence 23344444555555 5566666666665555 45555445555555443 57
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 038606 340 LDLALSLFREMTQIGCMQNVFLYNNLIDG-L--CNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQ-----DVV 411 (666)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 411 (666)
+++|..+|++.. . .++..+..|... + ...+++++|.+.|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 777777777766 2 445555556555 3 45677777777777777655 5556666666665 34 777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHHH
Q 038606 412 GALNLVRKMRVQGHEPWVKHNTLLIKELCK----HGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLID----IKRVDLA 483 (666)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 483 (666)
+|...|++.. . .+......+...|.. ..+.++|..+|+...+.| ++.....+...|.. ..+++.|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 7777777665 2 244455555555544 236666666666666654 33344444444442 3466666
Q ss_pred HHHHHHHHhcC
Q 038606 484 LELFRDICAHG 494 (666)
Q Consensus 484 ~~~~~~~~~~~ 494 (666)
...|+...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 66666666654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.3e-16 Score=141.57 Aligned_cols=201 Identities=13% Similarity=0.003 Sum_probs=166.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|++...+..++..+.+.|++++|...|+++++.++. ++..+..+..++.+.|++++|+..|+++.+.+|.++.++..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 678889999999999999999999999999998665 7888999999999999999999999999999999999999999
Q ss_pred HHHHhc-----------CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 038606 143 VAFSKW-----------GEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVI 211 (666)
Q Consensus 143 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (666)
.++... |++++|+..|+++++.++ .+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 999999 999999999999998763 467788889999999999999999999999876 788899999
Q ss_pred HHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHH
Q 038606 212 IGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQ 291 (666)
Q Consensus 212 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (666)
..++...|++++|...|+++.+. .|+. ...+..+..++...|++++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~--------------------------------~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKD--------------------------------LDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTC--------------------------------HHHHHHHHHHHTC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCC--------------------------------hHHHHHHHHHHHHccCHHH
Confidence 99999999999999999999884 3442 1566778888999999999
Q ss_pred HHHHHHHHHh
Q 038606 292 AYNLLQAMIK 301 (666)
Q Consensus 292 A~~~~~~~~~ 301 (666)
|...+++...
T Consensus 204 A~~~~~~~~~ 213 (217)
T 2pl2_A 204 AARAAALEHH 213 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=2e-16 Score=147.05 Aligned_cols=229 Identities=11% Similarity=-0.042 Sum_probs=191.9
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhhh---cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHH
Q 038606 1 MASILSRARRIAPLRVLAQDVVKSR---CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALC 77 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (666)
|+.++.+.++++.|+..++.++... .|.++.++..++.++...|++++|...|+++++.+ |.+..+|..++.++.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 3556778899999999999999863 23457788999999999999999999999999987 678999999999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHH
Q 038606 78 KSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
..|++++|...|+++++..+. +..++..+..+|...|++++|...|+++.+..|.++.....+ ..+...|++++|...
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEKQAKEV 166 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHhcCHHHHHHH
Confidence 999999999999999997654 778899999999999999999999999999988776544433 344667999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCC---ccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 158 IERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFA---SDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
+++..... +++...+ .++..+...++.++|...++...+.... .+...|..++..|...|++++|...|+++...
T Consensus 167 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 98888764 3344444 4677778888999999999998765311 12578889999999999999999999999985
Q ss_pred C
Q 038606 235 G 235 (666)
Q Consensus 235 ~ 235 (666)
.
T Consensus 245 ~ 245 (275)
T 1xnf_A 245 N 245 (275)
T ss_dssp C
T ss_pred C
Confidence 3
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.9e-16 Score=144.47 Aligned_cols=218 Identities=10% Similarity=-0.039 Sum_probs=191.9
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC-------hhhHHHHHH
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN-------NYSYNCLLE 74 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~ 74 (666)
+.++.+.|++++|+..++.+++.. .++.++..++.++...|++++|.+.|+++.+.. |.+ ..++..++.
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchHHHHHHHHHHHH
Confidence 567778899999999999999887 688999999999999999999999999998865 222 578999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhH
Q 038606 75 ALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKA 154 (666)
Q Consensus 75 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (666)
++...|++++|...|+++.+..+. ...+...|++++|...++++....|.++.++..++..+...|++++|
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999986433 24566778999999999999998887888999999999999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 155 CELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
...++++.+.. +.+..++..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.
T Consensus 159 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999875 3467888899999999999999999999998875 566888999999999999999999999998874
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=8.7e-16 Score=147.23 Aligned_cols=251 Identities=12% Similarity=0.054 Sum_probs=210.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQ-FDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
.+..+|..++.++.+.|++++|...|+++++.++. +..+|..+..++...|+ +++|+..|++++..+|.+..+|..++
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 34568899999999999999999999999998766 78899999999999996 99999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc-cCCh
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK-NKQL 221 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 221 (666)
.++...|++++|+..|+++++.++ .+...|..+..++.+.|++++|+..|+++.+.+ +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999863 478889999999999999999999999999876 6688899999999998 5665
Q ss_pred hHH-----HHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC--CHHHHHH
Q 038606 222 EMA-----LQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNG--SIDQAYN 294 (666)
Q Consensus 222 ~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~ 294 (666)
++| +..|++.... .|+. ...|..+..++...| ++++|++
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~--------------------------------~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHN--------------------------------ESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTC--------------------------------HHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--CCCC--------------------------------HHHHHHHHHHHHccCccchHHHHH
Confidence 887 4888888774 4543 256777777788877 6899999
Q ss_pred HHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHH-HHcCCCCCHHHHHH
Q 038606 295 LLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDG---------KLDLALSLFREM-TQIGCMQNVFLYNN 364 (666)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~ 364 (666)
.++.+ +.. +.+...+..++.+|.+.| ..++|+++|+++ .+.. +.....|..
T Consensus 298 ~~~~~-~~~-----------------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~ 358 (382)
T 2h6f_A 298 QLLDL-QPS-----------------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRY 358 (382)
T ss_dssp HHHHH-TTT-----------------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHH
T ss_pred HHHHh-ccC-----------------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 99888 544 677888899999998874 258899999998 6654 344556665
Q ss_pred HHHHHH
Q 038606 365 LIDGLC 370 (666)
Q Consensus 365 l~~~~~ 370 (666)
+...+.
T Consensus 359 ~~~~l~ 364 (382)
T 2h6f_A 359 IGRSLQ 364 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1.4e-15 Score=139.24 Aligned_cols=200 Identities=14% Similarity=0.007 Sum_probs=180.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
+.++..++..+...|++++|...|+++.+.. |.+..++..++..+...|++++|...|+++.+.++. +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHH
Confidence 6778899999999999999999999999987 678899999999999999999999999999987654 6788888999
Q ss_pred HHHhcCChhHHHHHHHHHHH--cCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 110 VYCNSGQFDKALSVFNEIID--HGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
.|...|++++|++.|+++.. ..+.+..++..++.++...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988 556667788999999999999999999999999875 346778889999999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
+|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999998765 567788889999999999999999999999875
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-15 Score=139.59 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chHHH
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD-------EHVFS 139 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~ 139 (666)
..+..++..+...|++++|...|+++++.+ .+..++..+..++...|++++|++.++++.+..|.+ +.++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344444555555555555555555554443 344444445555555555555555555544433222 24445
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccC
Q 038606 140 ILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNK 219 (666)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 219 (666)
.++.++...|++++|...|+++.+.. |+. ..+.+.|++++|...++.+.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 55555555555555555555555432 121 12334455555555555555442 233444555555555555
Q ss_pred ChhHHHHHHHHHHh
Q 038606 220 QLEMALQLYSEMKG 233 (666)
Q Consensus 220 ~~~~a~~~~~~~~~ 233 (666)
++++|...|+++.+
T Consensus 154 ~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 154 DWPNAVKAYTEMIK 167 (258)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555555544
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=5e-16 Score=141.36 Aligned_cols=205 Identities=14% Similarity=0.122 Sum_probs=165.5
Q ss_pred hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH
Q 038606 25 RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL 104 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 104 (666)
..+.++..+..++..+...|++++|...|+++++.. |.+..++..++..+...|++++|...|+++.+..+. +..++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 94 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAY 94 (243)
T ss_dssp ------------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHH
Confidence 445677888999999999999999999999999877 678899999999999999999999999999987654 77888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
..+...+...|++++|.+.++++.+..+.++.++..++..+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 8899999999999999999999999998889999999999999999999999999998875 346778888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 185 RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999998765 567888999999999999999999999999885
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=2.1e-15 Score=135.44 Aligned_cols=207 Identities=9% Similarity=-0.065 Sum_probs=181.1
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
|.++.++..++..+...|++++|.+.|+.+.+.. |.+...+..++.++...|++++|...|+++.+..+. +..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 81 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNN 81 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 4467788999999999999999999999999987 678889999999999999999999999999987654 6778889
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHH--cCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 107 LLQVYCNS-GQFDKALSVFNEIID--HGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 107 l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
+...+... |++++|...++++.+ ..+.+..++..++.++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 99999999 999999999999998 444456788999999999999999999999998875 33577888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH
Q 038606 184 SRVDKALQLFDKMTKSGFA-SDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF 240 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 240 (666)
|++++|.+.++++.+.. + .+...+..+...+...|+.+.+..+++.+.+. .|+.
T Consensus 161 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~ 215 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYS 215 (225)
T ss_dssp TCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCC
Confidence 99999999999988765 4 57778888888889999999999999998764 3544
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=5.6e-16 Score=144.04 Aligned_cols=255 Identities=11% Similarity=-0.031 Sum_probs=199.0
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLC--VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG 115 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (666)
..+...|++++|++.|+++.+.... |.+..++..++..+...|++++|...|+++++.++. +..++..+...|...|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTT
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcc
Confidence 3455678999999999999986311 235678999999999999999999999999998655 7888999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHH
Q 038606 116 QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDK 195 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (666)
++++|+..|+++.+..|.++.++..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...++.
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999899999999999999999999999999999874 3333444444555678999999999988
Q ss_pred HHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccch
Q 038606 196 MTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLL 275 (666)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (666)
..... +++...+. ++..+...++.++|...++++.... |+.... ....
T Consensus 170 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~----------------------------~~~~ 217 (275)
T 1xnf_A 170 HFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDN--TSLAEH----------------------------LSET 217 (275)
T ss_dssp HHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHH----------------------------HHHH
T ss_pred HHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc--cccccc----------------------------ccHH
Confidence 77654 44444444 6777788888999999999887632 211000 0156
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038606 276 CNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLF 347 (666)
Q Consensus 276 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 347 (666)
+..+..++...|++++|...|++..... |.+...+ ..++...|++++|++.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANN-----------------VHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------CTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-----------------chhHHHH---HHHHHHHHHHHhhHHHH
Confidence 7788899999999999999999999765 3343333 44666777888777665
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=2e-15 Score=140.01 Aligned_cols=231 Identities=13% Similarity=0.030 Sum_probs=194.8
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChh----hHHHHHHHHH
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNY----SYNCLLEALC 77 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 77 (666)
|..+...|+++.|+..++.++... |.++.++..++.++...|++++|...|+++.+.. ++.. +|..++.++.
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHH
Confidence 567788899999999999999865 4478899999999999999999999999999842 3333 4899999999
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHH
Q 038606 78 KSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
..|++++|...|+++.+.++. +..++..+...|...|++++|+..|+++.+..|.++.++..++..+...+++++|.+.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998655 7788999999999999999999999999999998999999999444455699999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHhhhccCC---HHHHHHHHHHHHhCC-CCcc------HHHHHHHHHhhhccCChhHHHHH
Q 038606 158 IERMDDCNIRLNEKTFCVLIHGFVKKSR---VDKALQLFDKMTKSG-FASD------AAMYDVIIGGLCKNKQLEMALQL 227 (666)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 227 (666)
|+++.+..+ .+...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|++++|...
T Consensus 165 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999998753 356677778888888888 888999998876531 0133 25788899999999999999999
Q ss_pred HHHHHhCCCCCCH
Q 038606 228 YSEMKGSGITPDF 240 (666)
Q Consensus 228 ~~~~~~~~~~~~~ 240 (666)
|+++.+. .|+.
T Consensus 244 ~~~al~~--~p~~ 254 (272)
T 3u4t_A 244 WKNILAL--DPTN 254 (272)
T ss_dssp HHHHHHH--CTTC
T ss_pred HHHHHhc--CccH
Confidence 9999985 4544
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=3.1e-14 Score=131.80 Aligned_cols=225 Identities=16% Similarity=0.036 Sum_probs=196.8
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCccc
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK----SCSVDLVEMRLKEMQDYGWGYDKYT 103 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 103 (666)
.++.++..++..+...|++++|.+.|+++.+ +.+..++..++..|.. .|++++|..+|++..+.+ ++..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 4678899999999999999999999999998 3467889999999999 999999999999999875 6778
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcchhhHHH
Q 038606 104 LTPLLQVYCN----SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK----WGEVDKACELIERMDDCNIRLNEKTFCV 175 (666)
Q Consensus 104 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 175 (666)
+..+...|.. .+++++|++.|+++.+.+ ++.++..++..|.. .|++++|...|++..+.+ +...+..
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 8889999999 999999999999999885 78899999999999 999999999999999875 5567777
Q ss_pred HHHhhhc----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038606 176 LIHGFVK----KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK----NKQLEMALQLYSEMKGSGITPDFEILSKLI 247 (666)
Q Consensus 176 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 247 (666)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+. .
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~------- 218 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---G------- 218 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---H-------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---H-------
Confidence 8888877 899999999999998864 46778888889988 9999999999999988642 2
Q ss_pred HhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038606 248 TSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVS----NGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 303 (666)
..+..+..+|.. .+++++|.+.|++..+.+
T Consensus 219 --------------------------~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 219 --------------------------GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp --------------------------HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred --------------------------HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 456667778888 899999999999988765
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=2.2e-15 Score=137.07 Aligned_cols=205 Identities=12% Similarity=0.018 Sum_probs=172.1
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+..+.+.|+++.|+..++.++... |.++.++..++.++...|++++|...|+++.+.. |.+..++..++..+...|+
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHhcc
Confidence 556778899999999999998854 4478899999999999999999999999999987 6788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERM 161 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (666)
+++|...|+++.+..+. +...+..+...+...|++++|...++++.+..+.++.++..++.++...|++++|...++++
T Consensus 107 ~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999987654 77788899999999999999999999999999888999999999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHH
Q 038606 162 DDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVII 212 (666)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 212 (666)
.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 186 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 234 (243)
T 2q7f_A 186 TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKK 234 (243)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHT
T ss_pred HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHH
Confidence 8875 3467788899999999999999999999998865 44555555443
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=5.5e-15 Score=127.66 Aligned_cols=168 Identities=14% Similarity=0.023 Sum_probs=149.1
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
-++.+|..++.+|...|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|...+.++....+. +...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 367889999999999999999999999999988 788899999999999999999999999999887655 66777788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
...+...++++.|.+.+.++....|.+..++..++.++...|++++|++.|+++.+.+ +.+..++..+..+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999999999998888999999999999999999999999998875 346778888888999999999
Q ss_pred HHHHHHHHHHhC
Q 038606 188 KALQLFDKMTKS 199 (666)
Q Consensus 188 ~A~~~~~~~~~~ 199 (666)
+|++.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999998876
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=1e-14 Score=133.37 Aligned_cols=195 Identities=12% Similarity=-0.068 Sum_probs=174.1
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+.++...|++++|+..++.++... |.++.++..++.++...|++++|.+.|+++.+.. |.+...+..++..+...|+
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHHhH
Confidence 567788899999999999998864 4478899999999999999999999999999987 6788899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGY-DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIER 160 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (666)
+++|...|+++.+.+..| +...+..+...+...|++++|.+.|+++.+..|.++.++..++.++...|++++|...+++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998822222 5667888899999999999999999999999988899999999999999999999999999
Q ss_pred HhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCC
Q 038606 161 MDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG 200 (666)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (666)
+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99875 3467778888899999999999999999998764
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=5.7e-12 Score=128.99 Aligned_cols=220 Identities=12% Similarity=0.005 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------
Q 038606 321 SPNTSSFDIIINTLLKDGKLDLAL-SLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGF--------- 390 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------- 390 (666)
+.....|...+..+...|+.+.|. ++|++.... +|.+...|...+....+.|++++|.++|+.+.+...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 556667777777777777777775 777777653 345565666666667777777777777777654310
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038606 391 KPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAA 470 (666)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 470 (666)
.|+.. .. ..... ......|...+....+.|..+.|..+|..+.+.-..+....|...
T Consensus 419 ~p~~~----------------~~---~~~~~----~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 419 DPTNE----------------SA---INQLK----SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp STTCH----------------HH---HHHHH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred cCcch----------------hh---hhhhc----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 01100 00 00000 001123334444444444455555555555443001112222221
Q ss_pred HHHHHcc-CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc
Q 038606 471 IGGLIDI-KRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIP--SVATYNLLINGWCKS 547 (666)
Q Consensus 471 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 547 (666)
+..-.+. ++++.|..+|+...+. .+.+...+...+......|+.+.|..+|++.......+ ....|...+..-...
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 1111222 3355555555555544 23344444455555555555666666666555542211 223455555555555
Q ss_pred CChhHHHHHHHHHHhcCC
Q 038606 548 GNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 548 g~~~~a~~~~~~~~~~~~ 565 (666)
|+.+.+.++.+++.+..|
T Consensus 555 G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CCSHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 666666666666655544
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=2.2e-13 Score=126.04 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=167.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN----SGQFDKALSVFNEIIDHGWVDEHVF 138 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 138 (666)
|.++.++..++..+...|++++|...|+++.+. .+...+..+...|.. .+++++|+..|+++.+.+ ++.++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 457778888888899999999999999988873 255677778888888 889999999998888875 67788
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc----cCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 038606 139 SILLVAFSK----WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK----KSRVDKALQLFDKMTKSGFASDAAMYDV 210 (666)
Q Consensus 139 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (666)
..++..+.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 888888888 888888888888888764 56677777777777 888888888888887754 4556666
Q ss_pred HHHhhhc----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHh-
Q 038606 211 IIGGLCK----NKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVS- 285 (666)
Q Consensus 211 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 285 (666)
+...|.. .+++++|...|++..+.+ +. ..+..+..+|..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~---------------------------------~a~~~lg~~~~~g 195 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DS---------------------------------PGCFNAGNMYHHG 195 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH---------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH---------------------------------HHHHHHHHHHHcC
Confidence 7777776 778888888888777643 22 344556666666
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 038606 286 ---NGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLK----DGKLDLALSLFREMTQIG 354 (666)
Q Consensus 286 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 354 (666)
.+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~-------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE-------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHhCC-------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777776643 24556666666666 677777777777766654
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=4e-14 Score=126.98 Aligned_cols=206 Identities=7% Similarity=-0.096 Sum_probs=177.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|.+...+..++..+...|++++|...|+++.+..+. +...+..+...+...|++++|.+.++++....|.+..++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 456778999999999999999999999999987654 6778889999999999999999999999999988899999999
Q ss_pred HHHHhc-CChhhHHHHHHHHhhCCC-CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCC
Q 038606 143 VAFSKW-GEVDKACELIERMDDCNI-RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQ 220 (666)
Q Consensus 143 ~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 220 (666)
..+... |++++|...++++.+.+. +.+...+..+...+...|++++|+..|+++.+.. +.+...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999998321 2346778888999999999999999999998865 5568889999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 221 LEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMI 300 (666)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 300 (666)
+++|...++++.+.....+. ..+..+...+...|+.+.+..+++.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQA---------------------------------DDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCH---------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCH---------------------------------HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999874321222 445566777888999999999999987
Q ss_pred hCC
Q 038606 301 KGE 303 (666)
Q Consensus 301 ~~~ 303 (666)
...
T Consensus 210 ~~~ 212 (225)
T 2vq2_A 210 ANF 212 (225)
T ss_dssp HHC
T ss_pred HhC
Confidence 654
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=1.5e-11 Score=125.87 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038606 465 VCYSAAIGGLIDIKRVDLALELFRDICAH-GCCPDVVAYNIIISGLCKA-QRVAEAEDLFNEMITKGLIPSVATYNLLIN 542 (666)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 542 (666)
..|...+....+.|+.+.|..+|..+.+. + ......|...+..-.+. ++.+.|..+|+..++. ++-+...+...+.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 35777777777889999999999999875 2 12233343333333344 4589999999999987 4446667778888
Q ss_pred HHHccCChhHHHHHHHHHHhcCCC-CCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 543 GWCKSGNIDQAMLCLSRMLEKESG-SPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGL 615 (666)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 615 (666)
.....|+.+.|..+|++.....+. .-....|...+..-...|+.+.+.++.+++.+. .|+......++.-|
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 888899999999999999987551 113467888888888999999999999999986 34434444455544
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=3.9e-15 Score=147.41 Aligned_cols=281 Identities=12% Similarity=0.009 Sum_probs=198.5
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCC
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN----YSYNCLLEALCKSCSVDLVEMRLKEMQDYG-----WGYD 100 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 100 (666)
...+..++..+...|++++|...|+++++.. |.+. ..+..++..|...|++++|...|+++++.. .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3446678899999999999999999999986 4554 478889999999999999999999987641 1224
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCchHHHHHHHHHHhcCC-----------------hhhHHHH
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDH------GWVDEHVFSILLVAFSKWGE-----------------VDKACEL 157 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 157 (666)
..++..+...|...|++++|...++++... .+....++..++.++...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567778889999999999999999988765 22234578888999999999 9999998
Q ss_pred HHHHhhCC-----CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCC-Ccc----HHHHHHHHHhhhccCChhHHHHH
Q 038606 158 IERMDDCN-----IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGF-ASD----AAMYDVIIGGLCKNKQLEMALQL 227 (666)
Q Consensus 158 ~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~ 227 (666)
+++..+.. ......++..+...|...|++++|++.+++..+... .++ ..++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 88876521 112334677788888899999999999988765310 011 23677888889999999999999
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038606 228 YSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIA 306 (666)
Q Consensus 228 ~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 306 (666)
|++....... .+... ....+..+..++...|++++|...+++........
T Consensus 286 ~~~al~~~~~~~~~~~-----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 286 YKRTLALAVELGEREV-----------------------------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHTTCHHH-----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHH-----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 9887652110 11100 01456677778888888888888888766431000
Q ss_pred chhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 307 DVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
........++..+...+...|++++|...+++..+
T Consensus 337 -----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 -----------GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00011123455556666666666666666666554
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=7.8e-15 Score=146.66 Aligned_cols=217 Identities=13% Similarity=0.010 Sum_probs=188.1
Q ss_pred hhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038606 9 RRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLV-EEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEM 87 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 87 (666)
++++.+...++.... ..+.+...+..++.++...|++ ++|++.|+++++.+ |.+..+|..++.+|.+.|++++|..
T Consensus 82 ~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445666666666554 3445788899999999999999 99999999999987 6788999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc--------CC
Q 038606 88 RLKEMQDYGWGYDKYTLTPLLQVYCNS---------GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW--------GE 150 (666)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 150 (666)
.|+++++.+ |+...+..+..+|... |++++|++.|+++.+.+|.++.+|..++.++... |+
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 999999875 4568888899999999 9999999999999999999999999999999999 99
Q ss_pred hhhHHHHHHHHhhCCCC--cchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHH
Q 038606 151 VDKACELIERMDDCNIR--LNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLY 228 (666)
Q Consensus 151 ~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 228 (666)
+++|++.|+++.+.++. .+...+..+..+|...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987531 477889999999999999999999999998875 566778888999999999999988766
Q ss_pred HHH
Q 038606 229 SEM 231 (666)
Q Consensus 229 ~~~ 231 (666)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.7e-15 Score=147.40 Aligned_cols=282 Identities=13% Similarity=0.023 Sum_probs=198.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhcC----CC-C
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN----NYSYNCLLEALCKSCSVDLVEMRLKEMQDYG----WG-Y 99 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~ 99 (666)
+...+...+..+...|++++|...|+++++.. |.+ ...+..++..+...|++++|...|+++.+.. .. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556788999999999999999999999986 445 3578889999999999999999999886541 11 1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C----chHHHHHHHHHHhcCC--------------------hhh
Q 038606 100 DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--D----EHVFSILLVAFSKWGE--------------------VDK 153 (666)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~--------------------~~~ 153 (666)
...++..+...|...|++++|...++++....+. + ..++..++..+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456777888999999999999999988765331 2 3478888889999999 999
Q ss_pred HHHHHHHHhhC----C-CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHHhhhccCChhH
Q 038606 154 ACELIERMDDC----N-IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS----GFA-SDAAMYDVIIGGLCKNKQLEM 223 (666)
Q Consensus 154 A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~ 223 (666)
|.+.+++.... + .+....++..+...+...|++++|...+++..+. +.+ ....++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99988887542 1 1122346777888888899999999998887642 101 113367788888899999999
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038606 224 ALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 224 a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 302 (666)
|...+++....... ++... ...++..+...+...|++++|.+.++.....
T Consensus 246 A~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAV-----------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchH-----------------------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999887642100 11100 0145667777788888888888888776643
Q ss_pred CCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 303 EPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
.... +..+....++..+...+...|++++|...+++..+
T Consensus 297 ~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 297 AQEL-----------NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhc-----------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2000 00011134555666667777777777777666543
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=8.1e-14 Score=131.20 Aligned_cols=218 Identities=10% Similarity=0.017 Sum_probs=184.1
Q ss_pred chHHHHHHHHhhhhcCCCcchHHHHHHHHhc-------cCCh-------HHHHHHHHHHHH-cCCCCCChhhHHHHHHHH
Q 038606 12 APLRVLAQDVVKSRCFMSPGALGFLIRCLGS-------VGLV-------EEANMLFDQVKR-EGLCVPNNYSYNCLLEAL 76 (666)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 76 (666)
..|+.++++++.. .|.+++++..++..+.. .|++ ++|...|+++++ .. |.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 5677888888885 46689999999988864 5886 999999999998 45 56778999999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH-hcCChhhH
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKY-TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS-KWGEVDKA 154 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 154 (666)
.+.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|+.+|+++.+..|.+...|...+.... ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999986433 444 89999999999999999999999999988877777765555433 37999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCC-CCc--cHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 155 CELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG-FAS--DAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
..+|+++++.. +.+...|..++..+.+.|++++|+.+|++..+.. ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998874 3467888999999999999999999999999863 344 4678999999999999999999999999
Q ss_pred HhC
Q 038606 232 KGS 234 (666)
Q Consensus 232 ~~~ 234 (666)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=1.4e-13 Score=129.54 Aligned_cols=221 Identities=8% Similarity=0.017 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-cCCCCCcccHHHHHHHH
Q 038606 47 EEANMLFDQVKREGLCVPNNYSYNCLLEALCK-------SCSV-------DLVEMRLKEMQD-YGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 111 (666)
++|...|+++++.. |.++..|..++..+.. .|++ ++|+..|+++++ ..+. +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 78999999999987 7889999999988864 5886 999999999998 4443 667899999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCch-HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhh-ccCCHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEH-VFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFV-KKSRVDKA 189 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 189 (666)
.+.|++++|.++|+++.+..|.++. +|..++..+.+.|++++|..+|+++.+.++ .+...|...+.... ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999888776 899999999999999999999999998753 34555554443322 37999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCC
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG-ITPDFEILSKLITSCSDEGELTLLVKEIWEDRD 268 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 268 (666)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.|+.
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~---------------------------- 239 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK---------------------------- 239 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG----------------------------
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH----------------------------
Confidence 99999998764 5578899999999999999999999999999863 34431
Q ss_pred CCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 269 VNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
....|..++....+.|+.+.|..+++++.+..
T Consensus 240 ---~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 240 ---SGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp ---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 01567778888888999999999999998765
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=6.1e-14 Score=121.06 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=157.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
.+...|..++..|.+.|++++|.+.|+++++.++. +..++..+..+|.+.|++++|+..++.+....+.++.++..++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 46789999999999999999999999999998766 78899999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhH
Q 038606 144 AFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEM 223 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (666)
.+...++++.|.+.+.++.... +.+...+..+...+.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999875 3467788899999999999999999999998876 6778899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH
Q 038606 224 ALQLYSEMKGSGITPDF 240 (666)
Q Consensus 224 a~~~~~~~~~~~~~~~~ 240 (666)
|.+.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999999884 4543
No 64
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=155.25 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038606 465 VCYSAAIGGLIDIKRVDLALELFRDIC---AHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLI 541 (666)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (666)
.+|++++++|++.|++++|.++|.+|. ..|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 456666666666666666666665543 23455666666666666666666666666666666666666666666666
Q ss_pred HHHHccCCh-hHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 038606 542 NGWCKSGNI-DQAMLCLSRMLEKESGSPDVITYTTLIDGL 580 (666)
Q Consensus 542 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (666)
.++++.|+. ++|.++|++|.+.+. .||..+|++++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~-~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGL-KLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTC-CSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCC-CCChhhcccccChh
Confidence 666665553 455566666655554 56666665555433
No 65
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=155.84 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=108.8
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHH
Q 038606 495 CCPDVVAYNIIISGLCKAQRVAEAEDLFNEMIT---KGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVI 571 (666)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 571 (666)
...-..+|+++|++|++.|+.++|..+|.+|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.+. .||..
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHH
Confidence 344567899999999999999999999988764 47899999999999999999999999999999988877 99999
Q ss_pred hHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038606 572 TYTTLIDGLCIAGRP-DDAIMLWNEMEEKGCAPNRITFMALITGLCKC 618 (666)
Q Consensus 572 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 618 (666)
||+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 999999999999985 78899999999999999999999888765543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=1.3e-14 Score=139.26 Aligned_cols=281 Identities=14% Similarity=0.032 Sum_probs=198.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-CC
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN----NYSYNCLLEALCKSCSVDLVEMRLKEMQDY----GWG-YD 100 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~ 100 (666)
...+...+..+...|++++|...|+++++.. |.+ ...+..++..+...|++++|...++++.+. +.. ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4456778899999999999999999999886 445 367888999999999999999999987653 111 13
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C----chHHHHHHHHHHhcCC--------------------hhhH
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--D----EHVFSILLVAFSKWGE--------------------VDKA 154 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~--------------------~~~A 154 (666)
..++..+...|...|++++|...++++.+..+. + ..++..++..+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 456778888999999999999999988764321 2 2377888889999999 9999
Q ss_pred HHHHHHHhhC----C-CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC----CC-CccHHHHHHHHHhhhccCChhHH
Q 038606 155 CELIERMDDC----N-IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS----GF-ASDAAMYDVIIGGLCKNKQLEMA 224 (666)
Q Consensus 155 ~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a 224 (666)
.+.+++.... + ......++..+...+...|++++|.+.+++..+. +. .....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988887542 1 1122346777888888999999999999987642 10 11133677888889999999999
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 225 LQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
...+++....... ++... ....+..+...+...|++++|...+++.....
T Consensus 243 ~~~~~~al~~~~~~~~~~~-----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAV-----------------------------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHH-----------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhH-----------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999887652100 11100 01456677788888888888888888776432
Q ss_pred CCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 304 PIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
+.. ........++..+...+...|++++|...+++..+
T Consensus 294 ~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 294 QEL-----------KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHH-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Hhc-----------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 000 00011233555666666777777777777766655
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=2e-14 Score=142.26 Aligned_cols=281 Identities=12% Similarity=0.040 Sum_probs=192.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCc
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK----YTLTPLLQVYCNSGQFDKALSVFNEIIDH------GWVDE 135 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 135 (666)
...+..++..+...|++++|...|+++++.++. +. .++..+...|...|++++|++.++++... .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445667788899999999999999999997544 33 46778889999999999999999988764 22344
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCcchhhHHHHHHhhhccCC-----------------HHHHHHHH
Q 038606 136 HVFSILLVAFSKWGEVDKACELIERMDDCN-----IRLNEKTFCVLIHGFVKKSR-----------------VDKALQLF 193 (666)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 193 (666)
.++..++..+...|++++|...++++.+.. .+....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678889999999999999999999887641 12234567788888999999 99999998
Q ss_pred HHHHhC----CC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhC
Q 038606 194 DKMTKS----GF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDR 267 (666)
Q Consensus 194 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 267 (666)
++..+. +. +....++..+...|...|++++|...+++..+.... ++...
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------- 261 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA------------------------- 261 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH-------------------------
Confidence 886542 11 122347788889999999999999999988752100 11100
Q ss_pred CCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038606 268 DVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLF 347 (666)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 347 (666)
....+..+..++...|++++|.+.+++.....+.. +.......++..+...+...|++++|...+
T Consensus 262 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 262 ----ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL-----------GEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp ----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 01356777788888888888888888776532100 000112345566667777777777777777
Q ss_pred HHHHHcCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 348 REMTQIGC-----MQNVFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 348 ~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
++...... .....++..+...+...|++++|...+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66644210 00122444455555555555555555555544
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=7.5e-14 Score=137.94 Aligned_cols=283 Identities=12% Similarity=0.019 Sum_probs=195.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHHcC------C
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD----KYTLTPLLQVYCNSGQFDKALSVFNEIIDHG------W 132 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~ 132 (666)
.+....+...+..+...|++++|...|+++++.++. + ..++..+...|...|++++|...++++.... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 355667788899999999999999999999987544 3 2567788899999999999999999876541 1
Q ss_pred CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-----cchhhHHHHHHhhhccCC--------------------HH
Q 038606 133 VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIR-----LNEKTFCVLIHGFVKKSR--------------------VD 187 (666)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~ 187 (666)
....++..++..+...|++++|...++++.+.... ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 22456788899999999999999999988764211 113467788888889999 99
Q ss_pred HHHHHHHHHHhC----CC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHhhhccCcHHHHHH
Q 038606 188 KALQLFDKMTKS----GF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGI-TPDFEILSKLITSCSDEGELTLLVK 261 (666)
Q Consensus 188 ~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~ 261 (666)
+|.+.+++..+. +. +....++..+...|...|++++|...+++..+... .++....
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------------ 226 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE------------------ 226 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH------------------
Confidence 999998876542 11 12244678888999999999999999988875210 1111000
Q ss_pred HHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChH
Q 038606 262 EIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLD 341 (666)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 341 (666)
...+..+...+...|++++|...+++.....+.. ........++..+...+...|+++
T Consensus 227 -----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 227 -----------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-----------KDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-----------cCchHHHHHHHHHHHHHHHhCcHH
Confidence 1456777888888889998888888776432000 000111445666777777777777
Q ss_pred HHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 342 LALSLFREMTQIGCM-QN----VFLYNNLIDGLCNSNRLEESYELLREME 386 (666)
Q Consensus 342 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 386 (666)
+|...+++....... .+ ..++..+...+...|++++|...+++..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777766543100 11 3345555666666666666666666554
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=7.3e-14 Score=134.08 Aligned_cols=282 Identities=12% Similarity=0.030 Sum_probs=187.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD----KYTLTPLLQVYCNSGQFDKALSVFNEIIDH------GWVD 134 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~ 134 (666)
+...+...+..+...|++++|...|+++++.++. + ...+..+...+...|++++|.+.++++... .+..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3445667788899999999999999999987544 3 356778888999999999999999987654 1123
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-----cchhhHHHHHHhhhccCC--------------------HHHH
Q 038606 135 EHVFSILLVAFSKWGEVDKACELIERMDDCNIR-----LNEKTFCVLIHGFVKKSR--------------------VDKA 189 (666)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~A 189 (666)
..++..++..+...|++++|...++++.+.... ....++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 456788899999999999999999987653211 113367778888888999 9999
Q ss_pred HHHHHHHHhC----CC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHH
Q 038606 190 LQLFDKMTKS----GF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEI 263 (666)
Q Consensus 190 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~ 263 (666)
.+.+++..+. +. +....++..+...+...|++++|...+++..+.... ++...
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------------- 221 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------- 221 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH---------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH---------------------
Confidence 9988876542 11 122446778888899999999999999888652100 11100
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 038606 264 WEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLA 343 (666)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 343 (666)
....+..+...+...|++++|...+++.....+.. ........++..+...+...|++++|
T Consensus 222 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 222 --------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-----------KDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp --------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----------cchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 01356677778888888888888887766432000 00011134555666667777777777
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 344 LSLFREMTQIGCM-QN----VFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 344 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
...+++....... .+ ..++..+...+...|++++|...+++..+
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777665432100 11 22444455555556666666666555544
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=9.1e-14 Score=144.14 Aligned_cols=169 Identities=14% Similarity=0.045 Sum_probs=151.1
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
.|..+++|+.++.+|.+.|++++|++.|+++++.+ |.+..+|..++.+|.+.|++++|...|+++++.++. +..++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 44567889999999999999999999999999987 678889999999999999999999999999998665 778899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
.+..+|...|++++|++.|+++.+.+|.+..++..++.++...|++++|++.|+++++.++ .+...+..+..++...|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999998753 367788889999999999
Q ss_pred HHHHHHHHHHHHh
Q 038606 186 VDKALQLFDKMTK 198 (666)
Q Consensus 186 ~~~A~~~~~~~~~ 198 (666)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888765
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=4e-13 Score=120.47 Aligned_cols=201 Identities=10% Similarity=-0.025 Sum_probs=162.5
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCV-PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
.++..+...+..+...|++++|...|+++++.. | ++...+..++.++...|++++|...|+++++.++. +..++..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHH
Confidence 467889999999999999999999999999987 5 78888888999999999999999999999997655 7778899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCc-------hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--chhhHHHHH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWVDE-------HVFSILLVAFSKWGEVDKACELIERMDDCNIRL--NEKTFCVLI 177 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 177 (666)
+..+|...|++++|+..|+++.+..|.++ .++..++..+...|++++|++.|+++++.+ +. +...+..+.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999999998888 568889999999999999999999999874 22 356677777
Q ss_pred HhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHH
Q 038606 178 HGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEI 242 (666)
Q Consensus 178 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (666)
.+|... +...++.+...+ ..+...|.... ....+.+++|...|++..+. .|+...
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 777544 344556655543 33444454433 23456789999999999874 454433
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.54 E-value=2.8e-13 Score=132.29 Aligned_cols=297 Identities=11% Similarity=-0.012 Sum_probs=208.1
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCC--CcchH--HHH--HHHHhccCChHHHH-----------HHHHHHHHcCCCCCChh
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFM--SPGAL--GFL--IRCLGSVGLVEEAN-----------MLFDQVKREGLCVPNNY 67 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~l--~~~~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~~ 67 (666)
..+.++.++|+.+.+++...-... +.+++ ..+ .+...-.+.++.+. +.++.+.... ++..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCch
Confidence 456789999999999998875443 44433 222 23333344555555 7777765532 2222
Q ss_pred h------HHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---
Q 038606 68 S------YNCLLEALCKSCSVDLVEMRLKEMQDY----GWGY-DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--- 133 (666)
Q Consensus 68 ~------~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 133 (666)
. +...+..+...|++++|...|+++.+. +.++ ...++..+...|...|++++|+..++++.+..+.
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 2 233778889999999999999999874 1111 3457788899999999999999999998764221
Q ss_pred ----CchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-----CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC----C
Q 038606 134 ----DEHVFSILLVAFSKWGEVDKACELIERMDDCNI-----RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS----G 200 (666)
Q Consensus 134 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~ 200 (666)
...++..++.++...|++++|.+.|+++.+... .....++..+...|...|++++|++.|++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 124688899999999999999999999876421 112246788889999999999999999998762 2
Q ss_pred C-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHH
Q 038606 201 F-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNS 278 (666)
Q Consensus 201 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (666)
. +....++..+...|...|++++|...+++..+.... ++... ...+..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~~~~ 308 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY------------------------------LSEFEF 308 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------HHHHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH------------------------------HHHHHH
Confidence 2 445668889999999999999999999998753100 11100 022445
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 279 IMRILVSNGS---IDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 279 l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
+...+...|+ +++|+.+++.... .+.....+..+...|...|++++|...+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~~------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKML------------------YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCcC------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777887 6777777766521 023344566777888888888888888887754
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.5e-12 Score=130.22 Aligned_cols=213 Identities=10% Similarity=-0.066 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 038606 445 AMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRV-DLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFN 523 (666)
Q Consensus 445 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 523 (666)
.++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555544432 23556666777777777777 77777777777653 4456677777777777777888877777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc---------CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHc--------CCh
Q 038606 524 EMITKGLIPSVATYNLLINGWCKS---------GNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIA--------GRP 586 (666)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 586 (666)
+..+. .|+...+..+..+|... |++++|+..++++.+..+ .+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 77765 45566777777777777 777888888887777765 4566777777777777 778
Q ss_pred hHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 038606 587 DDAIMLWNEMEEKGCA---PNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEVL 663 (666)
Q Consensus 587 ~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 663 (666)
++|++.|+++.+.. + .+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888777742 2 367777777777778888888888888877664 555677777777777777777777665
Q ss_pred hh
Q 038606 664 KE 665 (666)
Q Consensus 664 ~~ 665 (666)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=9.7e-14 Score=131.49 Aligned_cols=254 Identities=13% Similarity=0.034 Sum_probs=129.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHc-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc------
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKRE-------GLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY------ 95 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 95 (666)
...++..++..+...|++++|..+|+++.+. +. +....++..++..+...|++++|...|+++++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3455666777777777777777777777663 11 334456666667777777777777777666553
Q ss_pred C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHH
Q 038606 96 G-WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFC 174 (666)
Q Consensus 96 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (666)
+ .+....++..+...|...|++++|.+.|+++.+.. +.....+.+.....+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------------------------~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR---------------------------EKVLGKDHPDVAKQLN 157 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------------------------HHHHCTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH---------------------------HHhcCCCChHHHHHHH
Confidence 1 11123344455555555555555555555544321 0000011112233455
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHhC------C-CCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC-------CCCCH
Q 038606 175 VLIHGFVKKSRVDKALQLFDKMTKS------G-FASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG-------ITPDF 240 (666)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~ 240 (666)
.+...+...|++++|++.|+++.+. + .+....++..+...|...|++++|...++++.+.. ..+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 5555566666666666666655442 1 12234456667777777777777777777766420 01110
Q ss_pred HHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCC
Q 038606 241 EILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTV 320 (666)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (666)
...... ...+......+...+.+.++...++......
T Consensus 238 ~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------- 274 (311)
T 3nf1_A 238 KPIWMH--------------------------AEEREECKGKQKDGTSFGEYGGWYKACKVDS----------------- 274 (311)
T ss_dssp CCHHHH--------------------------HHHHHHC-------CCSCCCC---------C-----------------
T ss_pred HHHHHH--------------------------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-----------------
Confidence 000000 0112222233344455555666666655443
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038606 321 SPNTSSFDIIINTLLKDGKLDLALSLFREMTQI 353 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 353 (666)
+....++..+...|.+.|++++|...|++..+.
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455667777888888888888888888877653
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=134.97 Aligned_cols=232 Identities=10% Similarity=-0.024 Sum_probs=171.1
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhh-------hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHc------CCCCCChh
Q 038606 1 MASILSRARRIAPLRVLAQDVVKS-------RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKRE------GLCVPNNY 67 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 67 (666)
++.++...|++++|+..++.++.. ..+....++..++.+|...|++++|...|+++++. ...+....
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 356788899999999999988874 34456777899999999999999999999999875 21134467
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC------C-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYG------W-GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH--------GW 132 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~ 132 (666)
++..++..+...|++++|...|+++.+.. . +....++..+...+...|++++|++.|+++... .+
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 88999999999999999999999998751 1 224556788889999999999999999998775 33
Q ss_pred CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC-------CCcc-------hhhHHHHHHhhhccCCHHHHHHHHHHHHh
Q 038606 133 VDEHVFSILLVAFSKWGEVDKACELIERMDDCN-------IRLN-------EKTFCVLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
....++..++.++...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.+|...+.....
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 344578889999999999999999999988631 1111 11222233334455667777777777765
Q ss_pred CCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 199 SGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
.. +.+..++..+...|.+.|++++|...|++..+
T Consensus 273 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 273 DS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 43 45667889999999999999999999999876
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=6.8e-13 Score=137.66 Aligned_cols=168 Identities=12% Similarity=0.001 Sum_probs=155.9
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|.+..+|+.|+.+|.+.|++++|.+.|+++++.++. +..++..+..+|.+.|++++|++.|+++++.+|.+..++..++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 567889999999999999999999999999998765 7889999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChh
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLE 222 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 222 (666)
.++...|++++|++.|+++++.++ .+...+..+..+|.+.|++++|++.|++..+.. +.+...|..++..+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999999763 467889999999999999999999999999875 567889999999999999999
Q ss_pred HHHHHHHHHHh
Q 038606 223 MALQLYSEMKG 233 (666)
Q Consensus 223 ~a~~~~~~~~~ 233 (666)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=1.5e-12 Score=112.54 Aligned_cols=164 Identities=18% Similarity=0.087 Sum_probs=108.5
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV 110 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (666)
..+..++..+...|++++|...|+++.+.. |.+..++..++..+...|++++|...++++.+..+. +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 445666777777777777777777777655 456667777777777777777777777777665433 55566666667
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHH
Q 038606 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKAL 190 (666)
Q Consensus 111 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 190 (666)
+...|++++|.+.++++....|.++..+..++.++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777776666666666666666666666666666666666553 224455555556666666666666
Q ss_pred HHHHHHHh
Q 038606 191 QLFDKMTK 198 (666)
Q Consensus 191 ~~~~~~~~ 198 (666)
+.++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=8.9e-12 Score=121.64 Aligned_cols=224 Identities=8% Similarity=-0.022 Sum_probs=123.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CC----ChhhHHHHHHHHHccCChHHHHHHHHHHHhc----C--CCccHHHHHHHH
Q 038606 438 ELCKHGKAMEAFRFLTDMVQEGF-LP----DIVCYSAAIGGLIDIKRVDLALELFRDICAH----G--CCPDVVAYNIII 506 (666)
Q Consensus 438 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~ 506 (666)
.+...|++++|...+++..+.-. .+ ...++..+...+...|+++.|...+.+..+. + .+....+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34444555555555555443200 01 1234455555566666666666666555431 0 011133556666
Q ss_pred HHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHh-----cCCCCCCHHhHHHH
Q 038606 507 SGLCKAQRVAEAEDLFNEMITK----GLIP-SVATYNLLINGWCKSGNIDQAMLCLSRMLE-----KESGSPDVITYTTL 576 (666)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l 576 (666)
..|...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+ ... .....++..+
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l 270 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAYFLI 270 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHH
Confidence 6667777777777777666543 1001 112566666777777777777777777665 221 1224456667
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 038606 577 IDGLCIAGRPDDAIMLWNEMEEK----GCAPNRITFMALITGLCKCDR---PRAALVHFRMMKEKGMKPD-MFVFVALIS 648 (666)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 648 (666)
..+|...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..++.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 77777777777777777766542 111112224455566666676 55555555554 22232 456667777
Q ss_pred HHHhcCChhhHHHHHhh
Q 038606 649 AFLSELNPPLAFEVLKE 665 (666)
Q Consensus 649 ~~~~~g~~~~A~~~~~~ 665 (666)
.|...|++++|..++++
T Consensus 348 ~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77777777777777653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=3.5e-12 Score=114.26 Aligned_cols=165 Identities=8% Similarity=-0.029 Sum_probs=140.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
+.++..+...+..+...|++++|...|+++++.+++++...+..+..++...|++++|++.|+++.+.+|.++.++..++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999876567788888999999999999999999999999998899999999
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcch-------hhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHH
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNE-------KTFCVLIHGFVKKSRVDKALQLFDKMTKSGFAS--DAAMYDVIIG 213 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 213 (666)
.++...|++++|++.+++..+..+ .+. ..|..+...+...|++++|++.|++..+.. +. +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 999999999999999999998753 244 457778888899999999999999999874 44 4677888888
Q ss_pred hhhccCChhHHHHHHHHHHhC
Q 038606 214 GLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 214 ~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.|...| ...++++...
T Consensus 162 ~~~~~~-----~~~~~~a~~~ 177 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPL 177 (228)
T ss_dssp HHHHHH-----HHHHHHHGGG
T ss_pred HHHHHH-----HHHHHHHHhc
Confidence 886554 3445555543
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=3.2e-12 Score=112.22 Aligned_cols=175 Identities=14% Similarity=0.006 Sum_probs=128.6
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNC----------------LLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 92 (666)
+++.+...+..+...|++++|...|+++++.+ |.+...|.. ++.++.+.|++++|...|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45667778888999999999999999999987 566778888 888888888888888888888
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC--hhhHHHHHHHHhhCCCCcch
Q 038606 93 QDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGE--VDKACELIERMDDCNIRLNE 170 (666)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~ 170 (666)
++.++. +...+..+..++...|++++|+..|+++.+.+|.++.++..++.++...|+ ...+...+..+... .|..
T Consensus 81 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (208)
T 3urz_A 81 LQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQ 157 (208)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cchh
Confidence 887655 677888888888888888888888888888888888888888887766553 34455555555432 2333
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 038606 171 KTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDV 210 (666)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (666)
..+.....++...|++++|+..|++..+. .|+......
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 33334444555677888888888887765 455544333
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=5.6e-12 Score=108.87 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=149.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF 145 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (666)
...+..++..+...|++++|...|+++.+..+. +..++..+...+...|++++|...++++.+..|.++.++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457788899999999999999999999886544 6778888999999999999999999999999888899999999999
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHH
Q 038606 146 SKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMAL 225 (666)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 225 (666)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998875 3467788889999999999999999999998875 567888999999999999999999
Q ss_pred HHHHHHHhC
Q 038606 226 QLYSEMKGS 234 (666)
Q Consensus 226 ~~~~~~~~~ 234 (666)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998764
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=2.3e-11 Score=118.30 Aligned_cols=278 Identities=11% Similarity=0.037 Sum_probs=185.9
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC-h----hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-Cc---
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN-N----YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY-DK--- 101 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--- 101 (666)
.++...+..+...|++++|...+++++... +++ . .++..++..+...|++++|...+++..+..... +.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 455667788889999999999999998875 333 2 256677788999999999999999987642221 11
Q ss_pred -ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc----
Q 038606 102 -YTLTPLLQVYCNSGQFDKALSVFNEIIDHGW--------VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL---- 168 (666)
Q Consensus 102 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---- 168 (666)
.++..+...+...|++++|...+++...... ....++..++.++...|++++|...+++........
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2345677888899999999999998875421 112356668888999999999999999887643211
Q ss_pred chhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCc-cHHHHH-----HHHHhhhccCChhHHHHHHHHHHhCCCCCCHHH
Q 038606 169 NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFAS-DAAMYD-----VIIGGLCKNKQLEMALQLYSEMKGSGITPDFEI 242 (666)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (666)
...++..+...+...|++++|...+++.......+ +...+. ..+..+...|++++|..++++.......+...
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~- 251 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF- 251 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh-
Confidence 23456677788889999999999999876431111 111121 23344778999999999998876532211110
Q ss_pred HHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCC
Q 038606 243 LSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSP 322 (666)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (666)
....+..+...+...|++++|...++........ .+.++
T Consensus 252 -----------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~------------~~~~~ 290 (373)
T 1hz4_A 252 -----------------------------LQGQWRNIARAQILLGEFEPAEIVLEELNENARS------------LRLMS 290 (373)
T ss_dssp -----------------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------TTCHH
T ss_pred -----------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------Ccchh
Confidence 0023455667788888898888888877543100 00011
Q ss_pred CH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 323 NT-SSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 323 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
+. ..+..+...+...|+.++|...+++...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 2445556666777777777777776654
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.41 E-value=2.2e-12 Score=106.25 Aligned_cols=145 Identities=11% Similarity=-0.028 Sum_probs=64.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG 115 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (666)
|+..+...|++++|+..|+.+.... |.+...+..++..|.+.|++++|.+.|+++++.++. ++.++..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3344444445555555554444432 233334444445555555555555555555444333 4444444445555555
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHH-HHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 116 QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACEL-IERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
++++|+..|+++.+.+|.++.++..++.++.+.|++++|.+. ++++.+.++ .++.+|......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 555555555555554444444555555555555554443332 244444321 23334443333333333
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=6.6e-12 Score=115.12 Aligned_cols=172 Identities=14% Similarity=0.037 Sum_probs=132.4
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--C
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--D 100 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 100 (666)
.+.++..+..++..+.+.|++++|...|+.+++.. |.+ ..++..++.++.+.|++++|...|+++++..+.. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 34567889999999999999999999999999987 445 6789999999999999999999999999975431 2
Q ss_pred cccHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCchHH-----------------HHHHHHHHhcCChhhHH
Q 038606 101 KYTLTPLLQVYCN--------SGQFDKALSVFNEIIDHGWVDEHVF-----------------SILLVAFSKWGEVDKAC 155 (666)
Q Consensus 101 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~ 155 (666)
..++..+..++.. .|++++|+..|+++.+..|.++.+. ..++.++...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4467777888888 9999999999999999988776665 45566777777777777
Q ss_pred HHHHHHhhCCCCc--chhhHHHHHHhhhcc----------CCHHHHHHHHHHHHhC
Q 038606 156 ELIERMDDCNIRL--NEKTFCVLIHGFVKK----------SRVDKALQLFDKMTKS 199 (666)
Q Consensus 156 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~ 199 (666)
..|+++++..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 7777776653221 223455555555544 6677777777776654
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=5.6e-11 Score=115.57 Aligned_cols=279 Identities=12% Similarity=-0.032 Sum_probs=185.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--Cc----hH
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKY----TLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--DE----HV 137 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~ 137 (666)
........+...|++++|...+++.++..+..+.. ++..+...+...|++++|...+++.....+. ++ .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455667889999999999999998865433322 4566677888999999999999998764321 22 23
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhhCC----CC--c-chhhHHHHHHhhhccCCHHHHHHHHHHHHhCCC---C-ccHH
Q 038606 138 FSILLVAFSKWGEVDKACELIERMDDCN----IR--L-NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGF---A-SDAA 206 (666)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~ 206 (666)
+..++..+...|++++|.+.+++..... .. | ....+..+...+...|++++|...+++...... + ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5678889999999999999999887532 11 2 234566677888999999999999998775321 1 1245
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHh
Q 038606 207 MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF-EILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVS 285 (666)
Q Consensus 207 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (666)
.+..+...+...|++++|...+++.......++. ..+.. ......+..+..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 227 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS----------------------------NANKVRVIYWQM 227 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH----------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH----------------------------HHHHHHHHHHHH
Confidence 6778889999999999999999998753111111 00000 011123345778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCH-H
Q 038606 286 NGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG----CMQNV-F 360 (666)
Q Consensus 286 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~ 360 (666)
.|++++|...++......+.. .......+..+...+...|++++|...++...... .+++. .
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFAN-------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTT-------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 899999999998876543100 00112245566777788888888888887765421 11111 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 361 LYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 361 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
.+..+..++...|+.++|...+++...
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455556666666666666666543
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=1.3e-12 Score=107.54 Aligned_cols=146 Identities=8% Similarity=-0.077 Sum_probs=123.1
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC
Q 038606 1 MASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC 80 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (666)
|+.+....|..+.|+..++...... |-++..+..++++|.+.|++++|++.|+++++.+ |.+..+|..++.+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 4567777889999999998888754 3367778889999999999999999999999988 788899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCchHHHHHHHHHHhcCC
Q 038606 81 SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSV-FNEIIDHGWVDEHVFSILLVAFSKWGE 150 (666)
Q Consensus 81 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (666)
++++|...|+++++.++. ++.++..+..+|.+.|++++|.+. ++++.+.+|.++.++......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999998665 778888999999999999876665 588999999999999888888887775
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=2.2e-12 Score=120.12 Aligned_cols=225 Identities=12% Similarity=-0.022 Sum_probs=160.3
Q ss_pred hhhhchHHHHHHHHhhh-------hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHc------CCCCCChhhHHHHHH
Q 038606 8 ARRIAPLRVLAQDVVKS-------RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKRE------GLCVPNNYSYNCLLE 74 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~ 74 (666)
.|.++.|+..+++.+.. ..+....++..++.+|...|++++|...|+++++. ...+....++..++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45566666666555553 34556778899999999999999999999998865 211345668999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcC-----C--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc--------CCCCchHHH
Q 038606 75 ALCKSCSVDLVEMRLKEMQDYG-----W--GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH--------GWVDEHVFS 139 (666)
Q Consensus 75 ~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~ 139 (666)
++...|++++|...|+++++.. . +....++..+...|...|++++|...|+++... .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999998751 1 224567888899999999999999999998876 333456788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCC-------CCc-chhhHHHHHHhhhccCC------HHHHHHHHHHHHhCCCCccH
Q 038606 140 ILLVAFSKWGEVDKACELIERMDDCN-------IRL-NEKTFCVLIHGFVKKSR------VDKALQLFDKMTKSGFASDA 205 (666)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~ 205 (666)
.++.++...|++++|.+.++++.+.. ..+ ....+..+...+...+. +..+...++..... .+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHH
Confidence 99999999999999999999987631 111 22233333333332222 33333333332221 13345
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 206 AMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
.++..+...|...|++++|..+|++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788899999999999999999999875
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=9e-11 Score=114.15 Aligned_cols=224 Identities=11% Similarity=0.010 Sum_probs=127.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHccCChHHHHHHHHHHHhc----CC-C-ccHHHHHHH
Q 038606 437 KELCKHGKAMEAFRFLTDMVQEGF-LPD----IVCYSAAIGGLIDIKRVDLALELFRDICAH----GC-C-PDVVAYNII 505 (666)
Q Consensus 437 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l 505 (666)
..+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+++..+. +. . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334455666666666655544210 011 234555566666666666666666665431 10 1 123455666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHh-----cCCCCCCHHhHHH
Q 038606 506 ISGLCKAQRVAEAEDLFNEMITK----GLIP-SVATYNLLINGWCKSGNIDQAMLCLSRMLE-----KESGSPDVITYTT 575 (666)
Q Consensus 506 ~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~ 575 (666)
...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+ ..+ ....++..
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~ 266 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD--LLPKVLFG 266 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG--GHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh--hHHHHHHH
Confidence 66777777777777777666542 1111 123556666677777777777777777665 333 22456666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 038606 576 LIDGLCIAGRPDDAIMLWNEMEEKG----CAPNRITFMALITGLCKCDR---PRAALVHFRMMKEKGMKPD-MFVFVALI 647 (666)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 647 (666)
+..+|...|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 7777777777777777777766531 11113334444455556666 55666655552 22222 35666777
Q ss_pred HHHHhcCChhhHHHHHhh
Q 038606 648 SAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 648 ~~~~~~g~~~~A~~~~~~ 665 (666)
..|...|++++|..++++
T Consensus 344 ~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 777777777777777654
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.38 E-value=6.8e-12 Score=131.25 Aligned_cols=174 Identities=10% Similarity=-0.070 Sum_probs=152.8
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 41 GSVGLVEEANMLFDQVK--------REGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 41 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
...|++++|++.|++++ +.+ |.+...+..++.++...|++++|...|+++++.++. +...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 77899999999999999 665 677889999999999999999999999999997655 7788999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQL 192 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 192 (666)
..|++++|++.|+++.+.+|.+..++..++.++.+.|++++ ++.|+++++.++ .+...+..+..++.+.|++++|++.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999998763 4677889999999999999999999
Q ss_pred HHHHHhCCCCccHHHHHHHHHhhhccCC
Q 038606 193 FDKMTKSGFASDAAMYDVIIGGLCKNKQ 220 (666)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 220 (666)
|++..+.+ +.+...|..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99998775 4456788888888877655
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=5.3e-12 Score=107.60 Aligned_cols=165 Identities=10% Similarity=0.017 Sum_probs=130.6
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
..+.+...+..+...|++++|...|+++++.+ |.+...+..++.++...|++++|...|+++.+..+ ++.....+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 34667888899999999999999999998887 67888999999999999999999999999887654 443333222
Q ss_pred HH-HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-chhhHHHHHHhhhccCCH
Q 038606 109 QV-YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL-NEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 109 ~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 186 (666)
.. +...++...|+..++++.+.+|.++.++..++.++...|++++|...|+++++.++.+ +...+..+..++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 22 2233344567888999999888888899999999999999999999999998876443 345777888888888888
Q ss_pred HHHHHHHHHHH
Q 038606 187 DKALQLFDKMT 197 (666)
Q Consensus 187 ~~A~~~~~~~~ 197 (666)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88888888765
No 91
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1.5e-11 Score=119.66 Aligned_cols=227 Identities=13% Similarity=0.023 Sum_probs=131.5
Q ss_pred hhhHhhhhchHHHHHHHHhhhhc-----CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-----ChhhHHHHH
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRC-----FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP-----NNYSYNCLL 73 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~ 73 (666)
.....|++++|+..++.+..... +....++..++.+|...|+++.|...++++++...-.+ ...++..++
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34456667777777766655421 11234566677777777777777777776665421001 133566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCC----C-CCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchHHHHHHH
Q 038606 74 EALCKSCSVDLVEMRLKEMQDYGW----G-YDKYTLTPLLQVYCNSGQFDKALSVFNEIID-----HGWVDEHVFSILLV 143 (666)
Q Consensus 74 ~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~ 143 (666)
.+|...|++++|...|+++++... + ....++..+..+|...|++++|++.|+++.. .++....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 777777777777777776655311 0 1123455566667777777777777777666 44444556666777
Q ss_pred HHHhcCChhhHHHHHHHHhhCCC----CcchhhHHHHHHhhhccCC---HHHHHHHHHHHHhCCCCc-cHHHHHHHHHhh
Q 038606 144 AFSKWGEVDKACELIERMDDCNI----RLNEKTFCVLIHGFVKKSR---VDKALQLFDKMTKSGFAS-DAAMYDVIIGGL 215 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 215 (666)
++.+.|++++|...+++..+... +.....+..+...+...++ +.+|+..++... ..+ ....+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHH
Confidence 77777777777777777655321 1112234444455556666 555555555421 122 223455666677
Q ss_pred hccCChhHHHHHHHHHHh
Q 038606 216 CKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 216 ~~~g~~~~a~~~~~~~~~ 233 (666)
...|++++|...|++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777766654
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=5.1e-11 Score=106.11 Aligned_cols=187 Identities=9% Similarity=-0.030 Sum_probs=132.0
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc--c
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK--Y 102 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 102 (666)
.++..+..++..+...|++++|...|+++++.. |.+ ...+..++.++.+.|++++|...|+++++..+.... .
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 356778888889999999999999999998876 222 357888899999999999999999999887654221 1
Q ss_pred cHHHHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 103 TLTPLLQVYCN------------------SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 103 ~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.+..+..++.. .|++++|+..|+++.+..|.++.++........-. ...
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~----------~~~--- 146 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK----------DRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH----------HHH---
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH----------HHH---
Confidence 34444555543 56788888888888888776665544322211110 000
Q ss_pred CCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 165 NIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD---AAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
......+...|.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345667888899999999999988763 222 2467788889999999999999999888764
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=2e-11 Score=127.66 Aligned_cols=175 Identities=11% Similarity=-0.098 Sum_probs=153.1
Q ss_pred hHhhhhchHHHHHHHHhh-------hhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh
Q 038606 6 SRARRIAPLRVLAQDVVK-------SRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK 78 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (666)
...|+.++|+..++.++. ...|.+..++..++.+|...|++++|...|+++++.+ |.+...|..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHH
Confidence 356888999999999882 2345688999999999999999999999999999987 7788999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHH
Q 038606 79 SCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELI 158 (666)
Q Consensus 79 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (666)
.|++++|...|+++++.++. +...+..+..+|.+.|++++ ++.|+++.+.+|.+..++..++.++.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998765 78889999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 159 ERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
+++.+.++ .+...+..+..++...++
T Consensus 558 ~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTST-THHHHHHHHHHHTC----
T ss_pred HhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 99998753 356677777777766554
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.32 E-value=3e-11 Score=111.93 Aligned_cols=169 Identities=11% Similarity=-0.031 Sum_probs=123.5
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
.|.+++.+..++..+...|++++|...|+++++.+ |.+..++..++.++.+.|++++|...++++.+..+. ......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHH
Confidence 35566777788888888888888888888888877 667778888888888888888888888888765432 222222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-chhhHHHHHHhhhccC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL-NEKTFCVLIHGFVKKS 184 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 184 (666)
.....+...++.+.|+..++++...+|.++.++..++.++...|++++|.+.|.++++.++.. +...+..++..+...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233345566777778888888888888788888888888888888888888888887765332 2556777777777777
Q ss_pred CHHHHHHHHHHHH
Q 038606 185 RVDKALQLFDKMT 197 (666)
Q Consensus 185 ~~~~A~~~~~~~~ 197 (666)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777776654
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=4.7e-11 Score=111.14 Aligned_cols=200 Identities=9% Similarity=-0.051 Sum_probs=135.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCC---CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C----cc
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGL---CVPN-NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY-D----KY 102 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~ 102 (666)
.|...+..|...|++++|...|+++.+... .++. ..+|..++.+|.+.|++++|...|+++++..... + ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344556778888888888888888776520 0111 4578888888888888888888888887643211 1 34
Q ss_pred cHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC------chHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchh----
Q 038606 103 TLTPLLQVYCNS-GQFDKALSVFNEIIDHGWVD------EHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEK---- 171 (666)
Q Consensus 103 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 171 (666)
++..+..+|... |++++|+..|+++....+.+ ..++..++.++...|++++|+..|+++.+..+.....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 677778888885 88888888888887654322 2457778888888888888888888888765332221
Q ss_pred --hHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccH------HHHHHHHHhhh--ccCChhHHHHHHHHHHh
Q 038606 172 --TFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDA------AMYDVIIGGLC--KNKQLEMALQLYSEMKG 233 (666)
Q Consensus 172 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 233 (666)
.+..+..++...|++++|...|++..+.. |+. ..+..++..+. ..+++++|+..|+.+..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 45666777788888888888888877542 221 12334455553 34567777777766544
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=8.7e-11 Score=95.12 Aligned_cols=131 Identities=16% Similarity=0.109 Sum_probs=103.3
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV 110 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (666)
.++..++..+...|++++|..+|+++.+.+ |.+...+..++..+...|++++|...++++.+.++. +...+..+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 356777888888888888888888888776 567778888888888888888888888888776543 56667777788
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 111 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
+...|++++|.+.++++....|.++.++..++.++...|++++|...++++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888777777777777888888888888888888777664
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=1e-10 Score=104.16 Aligned_cols=178 Identities=8% Similarity=-0.073 Sum_probs=113.7
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcC--CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChh---hHHHHHHHH
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCF--MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNY---SYNCLLEAL 76 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~ 76 (666)
+..+.+.|++++|+..++.++...+. ..+.++..++.+|.+.|++++|...|+++++.. |.+.. ++..++.++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHH
Confidence 56778899999999999999986432 235789999999999999999999999999987 44433 677777776
Q ss_pred Hh------------------cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHH
Q 038606 77 CK------------------SCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVF 138 (666)
Q Consensus 77 ~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 138 (666)
.. .|++++|...|+++++..+. +........... .+...+ ....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~-------~~~~ 150 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL-------AKYE 150 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-------HHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-------HHHH
Confidence 65 57899999999999987544 333332211100 000000 0112
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCcc--hhhHHHHHHhhhccCCHHHHHHHHHHHHhC
Q 038606 139 SILLVAFSKWGEVDKACELIERMDDCNIRLN--EKTFCVLIHGFVKKSRVDKALQLFDKMTKS 199 (666)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (666)
..++..+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 3344555556666666666666555432111 133445555566666666666666655544
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=4.7e-11 Score=109.43 Aligned_cols=162 Identities=10% Similarity=-0.037 Sum_probs=136.3
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCC---cchHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCChhhHHHHHHHHH
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMS---PGALGFLIRCLGSVGLVEEANMLFDQVKREGLC-VPNNYSYNCLLEALC 77 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 77 (666)
+..+.+.|++++|+..++.++...+. + +.++..++.+|.+.|++++|...|+++++..+. +....++..++.++.
T Consensus 22 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 22 AMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY 100 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence 45677889999999999999986533 4 788999999999999999999999999998621 123567888999999
Q ss_pred h--------cCChhHHHHHHHHHHhcCCCCCcccH-----------------HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 78 K--------SCSVDLVEMRLKEMQDYGWGYDKYTL-----------------TPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 78 ~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
. .|++++|...|+++++..+. +.... ..+...|.+.|++++|+..|+++.+..|
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9 99999999999999997654 44444 5568889999999999999999999877
Q ss_pred CC---chHHHHHHHHHHhc----------CChhhHHHHHHHHhhCC
Q 038606 133 VD---EHVFSILLVAFSKW----------GEVDKACELIERMDDCN 165 (666)
Q Consensus 133 ~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 165 (666)
.+ +.++..++.++... |++++|...|+++.+..
T Consensus 180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 64 45788888888876 88999999999999874
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=2.7e-09 Score=97.78 Aligned_cols=228 Identities=7% Similarity=0.025 Sum_probs=183.8
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCcccHHHHHHHH--
Q 038606 37 IRCLGSVG-LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC--SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY-- 111 (666)
Q Consensus 37 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-- 111 (666)
+++..+.| ..++|+++++.++..+ |.+..+|+.-..++...| +++++.+.++.++..++. +..+|+.-..++
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 34444444 4579999999999998 778889999999999999 999999999999998776 777777655555
Q ss_pred --Hhc---CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChh--hHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 112 --CNS---GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVD--KACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 112 --~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
... ++++++++.++++.+.+|.+..+|+...-++...|.++ ++++.++++++.++ .|...|+....++...+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 444 78999999999999999999999999999999999988 99999999999874 47778877666666666
Q ss_pred C------HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhH-HHHHHHHHHhCC-CCCCHHHHHHHHHhhhccCcH
Q 038606 185 R------VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEM-ALQLYSEMKGSG-ITPDFEILSKLITSCSDEGEL 256 (666)
Q Consensus 185 ~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~ 256 (666)
. ++++++.++.+.... +.|...|+.+...+.+.|+... +....+++...+ ..|.
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 256 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT----------------- 256 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES-----------------
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC-----------------
Confidence 6 899999999988876 7788899988888888887444 555666655432 1111
Q ss_pred HHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 257 TLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
+..++..++.++.+.|+.++|.++++.+..
T Consensus 257 ---------------s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 ---------------SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 126677788888899999999999999986
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=1e-10 Score=102.55 Aligned_cols=172 Identities=10% Similarity=-0.027 Sum_probs=137.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH----------------HHHHHHhcCChhHHHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP----------------LLQVYCNSGQFDKALSVFNEII 128 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~ 128 (666)
+...+...+..+...|++++|...|+++++.++. ++..+.. +..+|.+.|++++|+..|+++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455667778899999999999999999987554 5666777 8899999999999999999999
Q ss_pred HcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC--HHHHHHHHHHHHhCCCCccHH
Q 038606 129 DHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR--VDKALQLFDKMTKSGFASDAA 206 (666)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~ 206 (666)
+.+|.++.++..++.++...|++++|+..|+++++.++ .+..++..+...|...|+ .+.+...+...... .|...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhH
Confidence 99999999999999999999999999999999999863 467788888887765543 45566666666532 33333
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHH
Q 038606 207 MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEI 242 (666)
Q Consensus 207 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (666)
.+.....++...|++++|...|++..+. .|+...
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 4555666777889999999999999884 577643
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=1.1e-10 Score=108.59 Aligned_cols=197 Identities=9% Similarity=-0.016 Sum_probs=148.9
Q ss_pred hhhhHhhhhchHHHHHHHHhhhh----cC-CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----hhhHHHHH
Q 038606 3 SILSRARRIAPLRVLAQDVVKSR----CF-MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN----NYSYNCLL 73 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~ 73 (666)
.++...|++++|...++....-. .+ ....+|..++.+|...|++++|+..|+++++...-..+ ..++..++
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677899999999998777652 11 12567899999999999999999999999876410111 35788999
Q ss_pred HHHHhc-CChhHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch-------HHHH
Q 038606 74 EALCKS-CSVDLVEMRLKEMQDYGWGYD-----KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH-------VFSI 140 (666)
Q Consensus 74 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~ 140 (666)
.+|... |++++|...|+++++..+..+ ..++..+...+.+.|++++|+..|+++....+.++. .+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 999999999999987533211 346778899999999999999999999998765433 5677
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCcch----hhHHHHHHhhh--ccCCHHHHHHHHHHHHhC
Q 038606 141 LLVAFSKWGEVDKACELIERMDDCNIRLNE----KTFCVLIHGFV--KKSRVDKALQLFDKMTKS 199 (666)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 199 (666)
++.++...|++++|...|++..+..+.... ..+..++..+. ..+++++|+..|+.+...
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 888999999999999999999886432111 12344555553 456788999988877643
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=3.3e-10 Score=105.27 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=155.4
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhc------CC-CccHHHHHHH
Q 038606 440 CKHGKAMEAFRFLTDMVQE-------GFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAH------GC-CPDVVAYNII 505 (666)
Q Consensus 440 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 505 (666)
...|++++|+..+++..+. +.+....++..+...+...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22224567888889999999999999999998754 21 3345678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHhc-----CCCC-CCHHh
Q 038606 506 ISGLCKAQRVAEAEDLFNEMITK------GLIP-SVATYNLLINGWCKSGNIDQAMLCLSRMLEK-----ESGS-PDVIT 572 (666)
Q Consensus 506 ~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~ 572 (666)
...|...|++++|...+++..+. ...| ...++..+..+|...|++++|...++++.+. ++.. .....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998875 1123 3557888889999999999999999998876 1101 23457
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHccCChhHHHH------HHHHHHHcCCCC
Q 038606 573 YTTLIDGLCIAGRPDDAIMLWNEMEEK-------GCAPN-RITFMALITGLCKCDRPRAALV------HFRMMKEKGMKP 638 (666)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~ 638 (666)
+..+..+|...|++++|.+.++++.+. ...+. ...+..+...+...+....+.. .++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998763 11222 3334444444443333333222 2222111 1122
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHhh
Q 038606 639 DMFVFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 639 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
...++..++.+|...|++++|..++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357889999999999999999999875
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=3.4e-09 Score=95.85 Aligned_cols=261 Identities=12% Similarity=0.075 Sum_probs=172.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
+|+.+.. ++-.+-.|.+..++.-. .+... ........-+.++|...|++... ....|....+..+.
T Consensus 13 ~~~~lf~-ikn~fy~G~yq~~i~e~---~~~~~-~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la 78 (310)
T 3mv2_B 13 DPMDYFN-IKQNYYTGNFVQCLQEI---EKFSK-VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV 78 (310)
T ss_dssp --CCTHH-HHHHHTTTCHHHHTHHH---HTSSC-CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH
T ss_pred CcHHHHH-HHHHHHhhHHHHHHHHH---HhcCc-cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH
Confidence 3444443 45556679999999843 33221 12233444566899999988752 11223322333333
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcchhhHHHHHHhhhccCCHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI-RLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 187 (666)
.|...+ |+..|++....++.++.++..++.++...|++++|++.+.+.+..+. ..+...+..++..+.+.|+.+
T Consensus 79 -~~~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 79 -QFLDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp -HHHTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred -HHhccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 333322 78888888877655666777889999999999999999999987653 236677778889999999999
Q ss_pred HHHHHHHHHHhCCCCc-----cHHHHHHHHHh--hhccC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHH
Q 038606 188 KALQLFDKMTKSGFAS-----DAAMYDVIIGG--LCKNK--QLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTL 258 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 258 (666)
.|.+.+++|.+. .| +..+...++.+ ....| ++.+|..+|+++... .|+.
T Consensus 154 ~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~------------------ 211 (310)
T 3mv2_B 154 TASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTW------------------ 211 (310)
T ss_dssp HHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSH------------------
T ss_pred HHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCc------------------
Confidence 999999999876 45 34555556555 33334 899999999999775 3442
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 038606 259 LVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDG 338 (666)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 338 (666)
.....++.++.+.|++++|.+.++.+.+..+.... ....-+.+..++..+|......|
T Consensus 212 ---------------~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~-------k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 212 ---------------KTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQ-------KENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp ---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTT-------CHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ---------------ccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc-------cccCCCCCHHHHHHHHHHHHHhC
Confidence 11223333788999999999999977653100000 00000456777766666666677
Q ss_pred ChHHHHHHHHHHHHcC
Q 038606 339 KLDLALSLFREMTQIG 354 (666)
Q Consensus 339 ~~~~a~~~~~~~~~~~ 354 (666)
+ .|.+++.++.+..
T Consensus 270 k--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 270 L--DTEDLTNQLVKLD 283 (310)
T ss_dssp C--TTHHHHHHHHHTT
T ss_pred h--HHHHHHHHHHHhC
Confidence 6 7888888888865
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.22 E-value=2.9e-10 Score=105.29 Aligned_cols=168 Identities=8% Similarity=-0.084 Sum_probs=142.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|.+...+..++..+...|++++|...|+++++..+. +...+..+..++...|++++|+..++++...+|..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 567788899999999999999999999999998765 7788889999999999999999999999888774444444455
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHhhhccCC
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD--AAMYDVIIGGLCKNKQ 220 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 220 (666)
..+...++.++|.+.+++....+ +.+...+..+...+...|++++|+..|.++.+.. +.+ ...+..++..+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 56778888999999999998876 3477888899999999999999999999998864 222 6788999999999999
Q ss_pred hhHHHHHHHHHHh
Q 038606 221 LEMALQLYSEMKG 233 (666)
Q Consensus 221 ~~~a~~~~~~~~~ 233 (666)
.++|...|++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999987654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=1.1e-10 Score=99.31 Aligned_cols=157 Identities=15% Similarity=0.033 Sum_probs=130.9
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHH-HHhcC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEA-LCKSC 80 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 80 (666)
+..+.+.|++++|+..++.++...+ .++.++..++.++...|++++|...|+.+.+.. | +...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHHHHhhc
Confidence 5677889999999999999998654 478999999999999999999999999998876 4 55444333322 22334
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--chHHHHHHHHHHhcCChhhHHHHH
Q 038606 81 SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD--EHVFSILLVAFSKWGEVDKACELI 158 (666)
Q Consensus 81 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 158 (666)
....|...|+++++.++. +...+..+..++...|++++|+..|+++.+.+|.. +.++..++.++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 455689999999987655 78889999999999999999999999999998754 568999999999999999999999
Q ss_pred HHHhh
Q 038606 159 ERMDD 163 (666)
Q Consensus 159 ~~~~~ 163 (666)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=1.9e-10 Score=91.11 Aligned_cols=112 Identities=8% Similarity=-0.094 Sum_probs=83.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
.+.+...+..|.+.|++++|++.|+++++.+ |.+..+|..++.++.+.|++++|...|+++++.++. +...+..+..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 3456667777888888888888888877776 667777777888888888888888888888776554 6667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+|...|++++|++.|+++.+.+|.++.++..+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77778888888888888877777777666655543
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=8.2e-10 Score=97.00 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=90.8
Q ss_pred hHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC----ChhHHHHH
Q 038606 13 PLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC----SVDLVEMR 88 (666)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 88 (666)
+|...++.....+ ++.++..+...|...+++++|.++|+++.+.+ ++.++..|+..|.. + ++++|..+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3444444444443 45555666666666666666666666665532 44555555555555 4 56666666
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC--CchHHHHHHHHHHh----cCChhhHHHHH
Q 038606 89 LKEMQDYGWGYDKYTLTPLLQVYCN----SGQFDKALSVFNEIIDHGWV--DEHVFSILLVAFSK----WGEVDKACELI 158 (666)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~ 158 (666)
|++..+.+ ++..+..+...|.. .+++++|++.|++....++. .+.++..++.+|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665432 34445555555554 45556666666655555431 14555555555555 45555555555
Q ss_pred HHHhhCCCCcchhhHHHHHHhhhcc-C-----CHHHHHHHHHHHHhCC
Q 038606 159 ERMDDCNIRLNEKTFCVLIHGFVKK-S-----RVDKALQLFDKMTKSG 200 (666)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~ 200 (666)
++..+. +.+...+..|...|... | ++++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 555554 11233344444444321 1 5555555555555443
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=1.5e-09 Score=95.24 Aligned_cols=178 Identities=13% Similarity=0.061 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC----ChhHHHH
Q 038606 47 EEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG----QFDKALS 122 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 122 (666)
.+|.++|+++.+. .++.++..++..|...+++++|..+|++..+.+ ++..+..+...|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4678899999985 488899999999999999999999999999864 66778888888887 6 8999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCC-cchhhHHHHHHhhhc----cCCHHHHHHHH
Q 038606 123 VFNEIIDHGWVDEHVFSILLVAFSK----WGEVDKACELIERMDDCNIR-LNEKTFCVLIHGFVK----KSRVDKALQLF 193 (666)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~ 193 (666)
.|++..+.+ ++.++..++..|.. .+++++|++.|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 75 ~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 75 LAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998765 78889999999988 89999999999999998632 126777888888887 78999999999
Q ss_pred HHHHhCCCCccHHHHHHHHHhhhcc-C-----ChhHHHHHHHHHHhCCC
Q 038606 194 DKMTKSGFASDAAMYDVIIGGLCKN-K-----QLEMALQLYSEMKGSGI 236 (666)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 236 (666)
++..+. +.+...+..|...|..- | ++++|..+|+...+.|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999886 24455677777777643 3 89999999999998764
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=1e-07 Score=94.97 Aligned_cols=125 Identities=11% Similarity=-0.025 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 038606 500 VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCK-SGNIDQAMLCLSRMLEKESGSPDVITYTTLID 578 (666)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (666)
..|...+....+.+..+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+..+. ++..|...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 45666666666778899999999988 32 12234444433322222 33689999999998887652 3445666777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 579 GLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 579 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
.....|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 363 ~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778899999999998873 2567777777766777999989888888764
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=4.8e-08 Score=97.28 Aligned_cols=377 Identities=10% Similarity=-0.054 Sum_probs=220.1
Q ss_pred Hhhh-hchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC-hhH
Q 038606 7 RARR-IAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS-VDL 84 (666)
Q Consensus 7 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 84 (666)
+.|. ...|+.+++..+..-+. |+++.+..+|++.+..- |+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~----------------~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS----------------KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHHCCC----------------CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHH
Confidence 3463 78888888888775532 78999999999999853 799999999888877774 467
Q ss_pred HHHHHHHHHhc-CCC-CCcccHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCc-hHHHHHHHHHH-----------
Q 038606 85 VEMRLKEMQDY-GWG-YDKYTLTPLLQVYC----NSGQFDKALSVFNEIIDHGWVDE-HVFSILLVAFS----------- 146 (666)
Q Consensus 85 A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~----------- 146 (666)
...+|+.++.. |.. .+...|...+..+. .+|+.+.+..+|++++...+.+. ..|......-.
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88899988875 322 25577777776654 34678899999999988532222 22222222111
Q ss_pred --hcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc--CC-----HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc
Q 038606 147 --KWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK--SR-----VDKALQLFDKMTKSGFASDAAMYDVIIGGLCK 217 (666)
Q Consensus 147 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (666)
..+.+..|..+++.+...-...+...|...+..-... |- .+.+..+|+++.... +.+...|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 1122333444444443210011233555555542221 11 345778999988754 5668889988999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHH
Q 038606 218 NKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQ 297 (666)
Q Consensus 218 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 297 (666)
.|+.+.|..+|++.... |....+.. .|....+.+..++ .+...+... ..+.+
T Consensus 226 ~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~----------------~l~~~~~~~-~~~~~----- 277 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYG----------------DLKRKYSMG-EAESA----- 277 (493)
T ss_dssp TTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHH----------------HHHHHTC-------------
T ss_pred cCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHH----------------HHHHHHHhh-ccchh-----
Confidence 99999999999999986 44322111 1111100000011 111111000 00000
Q ss_pred HHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChh
Q 038606 298 AMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCN-SNRLE 376 (666)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 376 (666)
... .. ......|...+....+.++.+.|..+|+.+ ... +.+...|......-.. .++.+
T Consensus 278 ~~~-~~-----------------~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 278 EKV-FS-----------------KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp ----CH-----------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred hhh-cc-----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence 000 00 112345666666666777788888888888 321 2344455432222222 33588
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 377 ESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMV 456 (666)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 456 (666)
.|..+|+...+.. +.+...+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888877652 3344455556666677888888888888862 245667777777777788888888777776
Q ss_pred H
Q 038606 457 Q 457 (666)
Q Consensus 457 ~ 457 (666)
+
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=3.9e-09 Score=96.76 Aligned_cols=220 Identities=9% Similarity=-0.030 Sum_probs=183.9
Q ss_pred hhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHH----Hhc---
Q 038606 9 RRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVG--LVEEANMLFDQVKREGLCVPNNYSYNCLLEAL----CKS--- 79 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 79 (666)
+..++|..+...++.-. |-...+++....++...| ++++++++++.++..+ |.+..+|+-...++ ...
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcccc
Confidence 44467888888888754 336777888889999988 9999999999999988 78888888877776 555
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC------h
Q 038606 80 CSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFD--KALSVFNEIIDHGWVDEHVFSILLVAFSKWGE------V 151 (666)
Q Consensus 80 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 151 (666)
++++++...++++++.++. +..+|+--.-++.+.|.++ ++++.++++.+.++.+..+|+....++...|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 7899999999999998766 8888888777777888888 99999999999999999999999888888887 8
Q ss_pred hhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHH-HHHHHHHHHhCC--CCccHHHHHHHHHhhhccCChhHHHHHH
Q 038606 152 DKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDK-ALQLFDKMTKSG--FASDAAMYDVIIGGLCKNKQLEMALQLY 228 (666)
Q Consensus 152 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 228 (666)
+++++.+++++..++ -|...|+.+-..+.+.|+..+ +.++++++.+.+ -+.+...+..++..|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999998864 488889888888888877444 556666665432 1457788999999999999999999999
Q ss_pred HHHHh
Q 038606 229 SEMKG 233 (666)
Q Consensus 229 ~~~~~ 233 (666)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99986
No 112
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=1.4e-08 Score=91.80 Aligned_cols=179 Identities=9% Similarity=-0.060 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 038606 448 AFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGC-CPDVVAYNIIISGLCKAQRVAEAEDLFNEMI 526 (666)
Q Consensus 448 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 526 (666)
++..++++...+ .++...+..+..++...|++++|++++.+....+. ..+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444555666666667777777777776655432 1355566666777777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHccC--ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 038606 527 TKGLIP-----SVATYNLLING--WCKSG--NIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEME 597 (666)
Q Consensus 527 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (666)
+. .| +..+...++.+ ....| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 44 24444555544 22233 6777777777766553 332222333336677777777777777654
Q ss_pred HcC---------CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 598 EKG---------CAPNRITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 598 ~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
+.. -+.++.++..+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 420 02245555555555555565 667777777755
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=8.6e-10 Score=89.14 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
.|..++..+...|++++|...|+++.+.++. +...+..+...+...|++++|...++++....+.++..+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4556666667777777777777776665433 455566666666666777777777776666666555666666666666
Q ss_pred cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh
Q 038606 148 WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665543 22344555555555566666666666665544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=2.6e-10 Score=117.52 Aligned_cols=152 Identities=11% Similarity=-0.086 Sum_probs=75.6
Q ss_pred hhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038606 9 RRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMR 88 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (666)
|++++|+..+++++... |.++..+..++..+...|++++|.+.|+++++.+ |.+..++..++.+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555555432 2245555555555555566666666665555554 44455555555555555666666665
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc---CChhhHHHHHHHHhhC
Q 038606 89 LKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW---GEVDKACELIERMDDC 164 (666)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 164 (666)
|+++++.++. +...+..+..+|.+.|++++|.+.|+++.+.+|.++.++..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555554333 4445555555555555555555555555555555555555555555555 5555555555555554
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=4.4e-10 Score=115.79 Aligned_cols=163 Identities=11% Similarity=0.002 Sum_probs=128.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
.|++++|.+.|+++++.+ |.+...+..++..+...|++++|.+.|+++++.++. +...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 478999999999999887 678899999999999999999999999999997654 77889999999999999999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc---CCHHHHHHHHHHHHhC
Q 038606 123 VFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK---SRVDKALQLFDKMTKS 199 (666)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 199 (666)
.|+++.+.+|.+..++..++.++...|++++|.+.|+++.+.++ .+...+..+...+... |++++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998753 4677888899999999 9999999999999886
Q ss_pred CCCccHHHHHH
Q 038606 200 GFASDAAMYDV 210 (666)
Q Consensus 200 ~~~~~~~~~~~ 210 (666)
+ +.+...|..
T Consensus 158 ~-p~~~~~~~~ 167 (568)
T 2vsy_A 158 G-VGAVEPFAF 167 (568)
T ss_dssp T-CCCSCHHHH
T ss_pred C-CcccChHHH
Confidence 5 333334433
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=2.6e-10 Score=105.13 Aligned_cols=197 Identities=10% Similarity=-0.022 Sum_probs=140.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
.+...+..++..+...|++++|...|+++++.. |.+...|..++.+|.+.|++++|...++++++.++. +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 456778899999999999999999999999987 678899999999999999999999999999987654 77888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
..+|...|++++|+..|+++...+|.++..+...+....+..+ +.. +........+.+......+... ..|+++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK---KKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH---HHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH---HHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999999888765433222222222111111 111 1112222233444444444332 368899
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhcc-CChhHHHHHHHHHHhC
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKN-KQLEMALQLYSEMKGS 234 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 234 (666)
+|++.++...+.. +.+......+...+.+. +.+++|.++|..+.+.
T Consensus 153 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998887764 34444444554555554 6688899999888653
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=4.2e-09 Score=92.90 Aligned_cols=128 Identities=13% Similarity=-0.037 Sum_probs=110.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
+..++..+...|++++|...|+++. +|+..++..++.++...|++++|...|+++++.++. +...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 5677888889999999999998875 467889999999999999999999999999887644 6778888899999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCc----------------hHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDE----------------HVFSILLVAFSKWGEVDKACELIERMDDCNI 166 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (666)
..|++++|++.|+++.+..+.+. .++..++.++...|++++|.+.|+++.+..+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999998776655 7888889999999999999999999988753
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=1.3e-10 Score=94.80 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=72.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|.+...+..++..+.+.|++++|...|+++++.+|. ++..|..+..+|...|++++|+..|+++...+|.++.++..++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 445566777777777777777777777777776544 6666777777777777777777777777777777777777777
Q ss_pred HHHHhcCChhhHHHHHHHHhhCC
Q 038606 143 VAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
.++...|++++|...|+++++..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777777776653
No 119
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=4.2e-10 Score=91.75 Aligned_cols=103 Identities=15% Similarity=-0.061 Sum_probs=95.6
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
++..+..++..+.+.|++++|...|+++++.+ |.+...|..++.+|...|++++|...|+++++.++. ++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 56678899999999999999999999999998 788999999999999999999999999999998766 788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVD 134 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 134 (666)
.+|...|++++|+..|+++.+..|.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999987643
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.6e-09 Score=85.69 Aligned_cols=113 Identities=11% Similarity=-0.101 Sum_probs=91.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|.....+...+..+.+.|++++|.+.|+++++.++. +..++..+..+|.+.|++++|+..|+++++.+|.++.+|..++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 344567888888899999999999999998887655 7788888888888899999999999998888888888888888
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHH
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLI 177 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 177 (666)
.++...|++++|.+.|+++++.++ .+...+..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~ 122 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDP-SNEEAREGVR 122 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHH
Confidence 888889999999998888888753 2444444443
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=2.9e-09 Score=99.78 Aligned_cols=190 Identities=8% Similarity=-0.057 Sum_probs=114.6
Q ss_pred HhhhhchHHHHHHHHhhhhcC--C----C----cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----hhhHHHH
Q 038606 7 RARRIAPLRVLAQDVVKSRCF--M----S----PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN----NYSYNCL 72 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~--~----~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l 72 (666)
.+|+..+|+.++++..+.... . . ...|...+..|...|++++|...|.++.+...-..+ ..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 368889999999887764321 0 1 124555666777777777777777776654210011 3366667
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC---C--CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------chHHHHH
Q 038606 73 LEALCKSCSVDLVEMRLKEMQDYGWG---Y--DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD------EHVFSIL 141 (666)
Q Consensus 73 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 141 (666)
+.+|.+.|++++|...|+++++.... + -..++..+..+|.. |++++|++.|+++....+.. ..++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77777777777777777776553111 1 12345566666666 77777777777765543211 2456666
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCC----Ccc-hhhHHHHHHhhhccCCHHHHHHHHHHHH
Q 038606 142 LVAFSKWGEVDKACELIERMDDCNI----RLN-EKTFCVLIHGFVKKSRVDKALQLFDKMT 197 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (666)
+.++...|++++|+..|+++..... .+. ...+..+...+...|++++|...|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777777777777665311 111 1244445555666677777777777766
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.06 E-value=8e-10 Score=90.43 Aligned_cols=105 Identities=11% Similarity=-0.104 Sum_probs=75.8
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
+...+..++..+...|++++|...|+.++..+ |.+...|..++.++...|++++|...|+++++.++. ++..+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 45566677777777777777777777777766 567777777777777777777777777777776544 566667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEH 136 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 136 (666)
.+|...|++++|++.|+++.+..|.++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 7777777777777777777776655444
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.06 E-value=3.4e-09 Score=89.16 Aligned_cols=131 Identities=11% Similarity=-0.054 Sum_probs=104.9
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
...+..++..+...|++++|...|+++++.. |.+..++..++.++...|++++|...|+++.+..+. +...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 4567778888888999999999999988876 667888888888899999999999999988887544 6677888888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH--HHHhcCChhhHHHHHHHHhh
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV--AFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 163 (666)
++...|++++|...|+++....|.++..+..+.. .+...|++++|.+.+.....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888899999999998888888777766644433 46777888888887776543
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.04 E-value=8.8e-08 Score=88.56 Aligned_cols=252 Identities=10% Similarity=0.035 Sum_probs=178.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 34 GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC-SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 34 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
..+-....+.+..++|+++++.++..+ |.+..+|+....++...| .++++...++.++..+++ +..+|+.-..++.
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 334444555666789999999999998 788889999999998888 599999999999998776 7788887776666
Q ss_pred hc-C-ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChh--------hHHHHHHHHhhCCCCcchhhHHHHHHhhhc
Q 038606 113 NS-G-QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVD--------KACELIERMDDCNIRLNEKTFCVLIHGFVK 182 (666)
Q Consensus 113 ~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (666)
+. + +++++++.++++.+.+|.+..+|+...-++.+.|.++ ++++.++++++.++ .|...|+....++.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 66 6 8999999999999999999999998888888877777 89999999999874 477888887777777
Q ss_pred cCC-------HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhH--HHHHHHHHHhCC--CCCCHHHHHHHHHhhh
Q 038606 183 KSR-------VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEM--ALQLYSEMKGSG--ITPDFEILSKLITSCS 251 (666)
Q Consensus 183 ~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~--~~~~~~~~~~ll~~~~ 251 (666)
.++ ++++++.+++..... +.|...|+.+-..+.+.|.... -..+. ...+ +.|+...+......+.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC--------------CCCC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccc---ccccccccccchhHHHHHHHHH
Confidence 775 688999998888765 6788888876666665554311 00000 0000 0000000000000000
Q ss_pred ccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038606 252 DEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 302 (666)
..+. ......++..++..++..|...|+.++|.++++.+...
T Consensus 290 ~~~~---------~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 290 SDPL---------PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C-CC---------CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccc---------ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0000 00011234567788889999999999999999999754
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=2.1e-09 Score=95.88 Aligned_cols=196 Identities=8% Similarity=-0.060 Sum_probs=155.4
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHhcCCC-----CC-----
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCL-------LEALCKSCSVDLVEMRLKEMQDYGWG-----YD----- 100 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~----- 100 (666)
..+ ..+++..|.+.|.++.+.+ |.....|..+ ...+.+.++..++...+.+.++..+. .+
T Consensus 15 ~~~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 15 VSM-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY 91 (282)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT
T ss_pred hcc-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc
Confidence 344 5799999999999999998 7888999999 68888888888888888888763221 01
Q ss_pred ----------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcc-
Q 038606 101 ----------KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLN- 169 (666)
Q Consensus 101 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 169 (666)
......+...+...|++++|.++|+.+...+|.+. ....++..+.+.|++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 11234466778889999999999999988877666 78888889999999999999999776642 121
Q ss_pred -hhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH
Q 038606 170 -EKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFAS--DAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF 240 (666)
Q Consensus 170 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 240 (666)
...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++.... |+.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~ 241 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEP 241 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH
Confidence 3467778889999999999999999998543314 34467778888999999999999999999854 553
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.03 E-value=2.3e-09 Score=86.28 Aligned_cols=121 Identities=9% Similarity=-0.116 Sum_probs=87.5
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
.+.++..+..++..+...|++++|...|+++.+.. |.+...+..++.++...|++++|...|+++.+..+. +...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHH
Confidence 34455667777777888888888888888877765 556777777777777788888888888777776443 566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG 149 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (666)
.+..++...|++++|++.|+++....|.+..++..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777777777776666666666666666554
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=5.6e-09 Score=97.87 Aligned_cols=204 Identities=10% Similarity=0.051 Sum_probs=146.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 038606 42 SVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK-SCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKA 120 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 120 (666)
..|++++|.++++++.+.. +.. +.+ .+++++|...|.++ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 4578899999999888754 221 112 57888888888776 3466778999999
Q ss_pred HHHHHHHHHcCC--CC----chHHHHHHHHHHhcCChhhHHHHHHHHhhCCC---Cc--chhhHHHHHHhhhccCCHHHH
Q 038606 121 LSVFNEIIDHGW--VD----EHVFSILLVAFSKWGEVDKACELIERMDDCNI---RL--NEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 121 ~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A 189 (666)
...|.++....+ .+ ..++..++.+|...|++++|+..|++.++... .+ ...++..+..+|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 999888765432 11 24677888899999999999999988765311 11 23567778888888 999999
Q ss_pred HHHHHHHHhCC----CCc-cHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHH
Q 038606 190 LQLFDKMTKSG----FAS-DAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEI 263 (666)
Q Consensus 190 ~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~ 263 (666)
+..|++..+.. .++ ...++..+...|...|++++|...|++....... ++....
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------- 194 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC-------------------- 194 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH--------------------
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH--------------------
Confidence 99999876531 111 1457888899999999999999999998762100 111000
Q ss_pred HhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 264 WEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
...+..++.++...|++++|...|++.. ..
T Consensus 195 ---------~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 195 ---------YKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 0345667778888899999999999988 54
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.02 E-value=5.3e-09 Score=82.97 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=93.1
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
...+..++..+...|++++|.+.|+++.+.. |.+..++..++..+...|++++|...|+++.+..+. +..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 5667788888888888889988888888876 567778888888888888888888888888876543 6677778888
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW 148 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (666)
.+...|++++|...|+++....|.++.++..+..++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 888888888888888888888777777777776666544
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.01 E-value=3.9e-09 Score=84.58 Aligned_cols=120 Identities=12% Similarity=-0.068 Sum_probs=98.2
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
.+..+..++..+...|++++|...|+++.+.. |.+...+..++.++...|++++|...++++.+..+. +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 45667788888888889999999998888876 567788888888888888999998888888886544 567777888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCh
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEV 151 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (666)
.++...|++++|...|+++....|.++.++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888887777888888887777764
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=1.9e-09 Score=91.91 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=96.6
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCCh-
Q 038606 40 LGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV-YCNSGQF- 117 (666)
Q Consensus 40 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 117 (666)
+...|++++|...|+.+++.. |.+...|..++.+|...|++++|...|+++.+.++. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcc
Confidence 456788888888888888876 677788888888888888888888888888876544 66677777777 7778887
Q ss_pred -hHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 118 -DKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 118 -~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
++|+..|+++...+|.++.++..++.++...|++++|...|+++.+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888888888764
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.99 E-value=1.4e-09 Score=103.10 Aligned_cols=130 Identities=10% Similarity=-0.067 Sum_probs=79.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---------------NYSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
....+..++..+.+.|++++|...|+++++.. |.+ ..+|..++.+|.+.|++++|...|++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666777777777777777777776665 333 3566666666666666666666666666
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhH-HHHHHHH
Q 038606 94 DYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKA-CELIERM 161 (666)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 161 (666)
+.++. +...+..+..+|...|++++|+..|+++.+.+|.+..++..+..++...|+.++| ...+..|
T Consensus 224 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 224 ELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65433 5555666666666666666666666666666665666666666666666666555 2344443
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=1.7e-09 Score=88.44 Aligned_cols=112 Identities=10% Similarity=-0.068 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038606 51 MLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 130 (666)
..|+++++.+ |.+...+..++..+...|++++|...|+++++.++. +...|..+..+|...|++++|+..|+++...
T Consensus 8 ~~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566777665 567778888999999999999999999999987655 7888888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 131 GWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+|.++.++..++.++...|++++|.+.|+++++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99899999999999999999999999999988763
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.2e-09 Score=83.69 Aligned_cols=112 Identities=8% Similarity=-0.051 Sum_probs=81.9
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
...+..++..+.+.|++++|...|+++++.+ |.+...|..++.++.+.|++++|...|+++++.++. +...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 4556777778888888888888888888776 567777888888888888888888888888776544 5667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcC------CCCchHHHHHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHG------WVDEHVFSILLVA 144 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~ 144 (666)
++...|++++|+..|+++...+ |.++.++..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7777888888888888777766 5444444444433
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.99 E-value=2.7e-09 Score=86.82 Aligned_cols=107 Identities=10% Similarity=-0.136 Sum_probs=78.9
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
+...+..++..+...|++++|...|+.++..+ |.+...|..++.++...|++++|...|+++++.++. ++..+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 44556677777777888888888888877776 567777777778888888888888888888776554 666677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVF 138 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 138 (666)
.+|...|++++|++.|+++....|.++...
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 777777888888888877777666555443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=9.6e-09 Score=87.43 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=110.4
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHH-HHhcCCh-
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEA-LCKSCSV- 82 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 82 (666)
+...|+++.|+..++.++... |.++.++..++.+|...|++++|...|+++.+.+ |.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 456789999999999988865 4578899999999999999999999999999987 6788899999999 8899998
Q ss_pred -hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchH
Q 038606 83 -DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHV 137 (666)
Q Consensus 83 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 137 (666)
++|...|+++++.++. +...+..+..+|...|++++|...|+++....|.++..
T Consensus 97 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred hHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999998654 67788889999999999999999999999998876543
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=8.4e-08 Score=88.71 Aligned_cols=225 Identities=9% Similarity=-0.015 Sum_probs=175.6
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhc-C-C
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVG-LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKS-C-S 81 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 81 (666)
+...+..++|..+.+.++...+ -...+++....++...| ++++++++++.++..+ |.+..+|+-...++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 4445566788999998888553 37777888888888888 5999999999999988 78999999988888877 7 8
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC---
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFD--------KALSVFNEIIDHGWVDEHVFSILLVAFSKWGE--- 150 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 150 (666)
++++.+.++++++.++. |..+|+--.-++.+.|.++ ++++.++++.+.++.+..+|+....++.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 99999999999998765 7778877666666666666 99999999999999999999999999988886
Q ss_pred ----hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH--------------------HHHHHHHHHHHhCC-----C
Q 038606 151 ----VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV--------------------DKALQLFDKMTKSG-----F 201 (666)
Q Consensus 151 ----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~-----~ 201 (666)
++++++.+++++..++ -|...|+.+-..+.+.|+. ....+....+.... -
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6899999999988763 4778887766666665543 23333333333221 1
Q ss_pred CccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 202 ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 202 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.++...+..++..|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 367778889999999999999999999998753
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.91 E-value=4e-09 Score=91.67 Aligned_cols=123 Identities=9% Similarity=-0.104 Sum_probs=68.7
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN----------------YSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
...+..++..+...|++++|...|+++++.. |.+. ..+..++.++.+.|++++|...+++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3445556666666666666666666666544 2222 455555556666666666666666665
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHH
Q 038606 94 DYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKAC 155 (666)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (666)
+..+. +...+..+..+|...|++++|+..|+++....|.++.++..+..++...++..++.
T Consensus 116 ~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 116 KIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55332 44555555555556666666666666665555555555555555555555554444
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.91 E-value=2.7e-08 Score=87.68 Aligned_cols=126 Identities=12% Similarity=-0.058 Sum_probs=112.0
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+.++...|++++|+..++.+. ++++.++..++.+|...|++++|...|+++++.+ |.+..++..++.++...|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 456778899999999998885 3478899999999999999999999999999987 6788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCc----------------ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038606 82 VDLVEMRLKEMQDYGWGYDK----------------YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD 134 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 134 (666)
+++|...|+++.+..+. +. ..+..+..+|.+.|++++|.+.|+++....|.+
T Consensus 87 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999986544 33 678888999999999999999999999987754
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.91 E-value=4.8e-07 Score=83.35 Aligned_cols=228 Identities=12% Similarity=0.018 Sum_probs=168.7
Q ss_pred HhccCCh-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 40 LGSVGLV-EEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS----------VDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 40 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
..+.|.+ ++|+.+++.++..+ |.+..+|+.-..++...|. ++++...++.++..++. +..+|+.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 3445655 48999999999988 6777888887666655554 68899999999998766 888888777
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC-hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc--
Q 038606 109 QVYCNSG--QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGE-VDKACELIERMDDCNIRLNEKTFCVLIHGFVKK-- 183 (666)
Q Consensus 109 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 183 (666)
.++.+.| .++++++.++++.+.+|.+..+|+...-+....|. ++++++.++++++.++ .|...|+....++.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhh
Confidence 7777777 48999999999999999999999999998888998 5999999999999874 4777777665555443
Q ss_pred ------------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcc-----------CChhHHHHHHHHHHhCCCCCCH
Q 038606 184 ------------SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKN-----------KQLEMALQLYSEMKGSGITPDF 240 (666)
Q Consensus 184 ------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~ 240 (666)
+.++++++.++...... |.|...|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 45789999999988765 67888887554444443 3467888888888874 4553
Q ss_pred HHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 241 EILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
.+.- .....+.......+..+++...+.++.+.+
T Consensus 272 -~w~l----------------------------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 272 -KWCL----------------------------LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp -HHHH----------------------------HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred -chHH----------------------------HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 1110 011111222234567788888999988766
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.90 E-value=1.2e-09 Score=103.44 Aligned_cols=153 Identities=12% Similarity=-0.022 Sum_probs=107.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--------------cccHHHH
Q 038606 42 SVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD--------------KYTLTPL 107 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l 107 (666)
..+++++|...|+...+.. |.+...+..++..+.+.|++++|...|+++++..+... ..++..+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 3456677777777766554 45677888899999999999999999999988755422 3566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
..+|.+.|++++|+..|++++..+|.++.++..++.++...|++++|...|+++++.++ .+...+..+..++.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777776642 34556666666666666666
Q ss_pred HH-HHHHHHHH
Q 038606 188 KA-LQLFDKMT 197 (666)
Q Consensus 188 ~A-~~~~~~~~ 197 (666)
+| ...+..|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33444443
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=1.3e-07 Score=88.04 Aligned_cols=209 Identities=10% Similarity=0.036 Sum_probs=144.8
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038606 18 AQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGW 97 (666)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 97 (666)
+..+.+-...|+.+.+..+++.+.-. .+. ++....... +.....+...+..+...|++++|.+.+++.++...
T Consensus 34 is~~e~g~~~~~~~~l~~l~~~l~~~--~~~---l~~~~~~~~--~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~ 106 (293)
T 2qfc_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--IIH---FYEVLIYSD--IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHTSSSCCCHHHHHHHTTTSCCC--THH---HHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--HHH---Hhccccccc--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc
Confidence 34444434445666555555554432 222 122221111 23455677788899999999999999999888643
Q ss_pred CCCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C----chHHHHHHHHHHhcCChhhHHHHHHHHhh---
Q 038606 98 GYDK-----YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--D----EHVFSILLVAFSKWGEVDKACELIERMDD--- 163 (666)
Q Consensus 98 ~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 163 (666)
..+. ..+..+...+...|++++|+..++++....+. + ..+++.++..|...|++++|...|+++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3111 12334566777889999999999998865332 1 34788999999999999999999999873
Q ss_pred CCCC-c--chhhHHHHHHhhhccCCHHHHHHHHHHHHhCC----CCc-cHHHHHHHHHhhhccCChhHH-HHHHHHHHh
Q 038606 164 CNIR-L--NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG----FAS-DAAMYDVIIGGLCKNKQLEMA-LQLYSEMKG 233 (666)
Q Consensus 164 ~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 233 (666)
.... + ...++..+...|...|++++|+..+++..+.. ... -..+|..+...|.+.|++++| ...+++...
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2111 1 22578888899999999999999999876531 111 166788999999999999999 777887764
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=2.8e-08 Score=83.45 Aligned_cols=129 Identities=9% Similarity=-0.039 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
..+..++..+...|++++|...|+++++..+. +..++..+..++...|++++|+..++++....|.++.++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45667777788888888888888888776544 56677777777888888888888888888877777777777777888
Q ss_pred hcCChhhHHHHHHHHhhCCCCcchhhH--HHHHHhhhccCCHHHHHHHHHHHH
Q 038606 147 KWGEVDKACELIERMDDCNIRLNEKTF--CVLIHGFVKKSRVDKALQLFDKMT 197 (666)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~ 197 (666)
..|++++|.+.|+++.+.++. +...+ ...+..+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888777765422 33333 223333556666777776666543
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.89 E-value=4e-08 Score=76.81 Aligned_cols=112 Identities=13% Similarity=-0.029 Sum_probs=82.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
+..+..++..+...|++++|...|+.+.... |.+...+..++.++...|++++|...++++.+..+. +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3456677778888888888888888887776 567777777888888888888888888888776543 5666777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
++...|++++|.+.++++...+|.++..+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777888888888888777777666665555443
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.89 E-value=1.5e-09 Score=94.32 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=95.8
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---------
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK--------- 101 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------- 101 (666)
.+-+.........|+++.|.+.|+...+.. +.....+..++..+...|++++|...|+++++..+. ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 81 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLD 81 (198)
T ss_dssp -----------------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHH
Confidence 333445555666778888888887555443 345667888888999999999999999999886443 22
Q ss_pred -------ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHH
Q 038606 102 -------YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFC 174 (666)
Q Consensus 102 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (666)
.++..+..+|...|++++|+..++++....|.++.++..++.++...|++++|.+.|+++.+..+ .+...+.
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 160 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHH
Confidence 56666777777777777777777777777776777777777777777777777777777766542 2445555
Q ss_pred HHHHhhhccCCHHHHH
Q 038606 175 VLIHGFVKKSRVDKAL 190 (666)
Q Consensus 175 ~l~~~~~~~~~~~~A~ 190 (666)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444444
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=6.6e-09 Score=84.52 Aligned_cols=111 Identities=9% Similarity=-0.074 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038606 52 LFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 131 (666)
.|+++++.+ |.+...+..++..+.+.|++++|...|+++++.++. +...|..+..+|...|++++|+..|+++...+
T Consensus 6 ~l~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLRGLS--EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHcCC--HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555554 456678888889999999999999999999887655 77888888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 132 WVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
|.++..+..++.++...|++++|.+.|+++.+..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9889999999999999999999999999988763
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=3e-08 Score=79.59 Aligned_cols=120 Identities=10% Similarity=-0.060 Sum_probs=93.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
+.+...+..++..+...|++++|...|+++.+..+. +..++..+...+...|++++|++.++++.+..|.++.++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 455677888888888999999999999988886544 6777888888888888999999999888888887888888888
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
.++...|++++|.+.|++..+..+ .+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 888888888888888888877642 24445555555554443
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=2.9e-08 Score=92.33 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=141.3
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038606 17 LAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
.+..+.+-...|+.+.+..+++.+.-.- + .++..-.... .+....+...+..+...|++++|...+++..+..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~~~~~~~--~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYEVLIYSD--IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHHTTTSSC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhCCCCCCc--chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 3444444445667777777777766422 1 1222221111 2346666677778888889999999888887753
Q ss_pred CC-CCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc------hHHHHHHHHHHhcCChhhHHHHHHHHhh--
Q 038606 97 WG-YDK----YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDE------HVFSILLVAFSKWGEVDKACELIERMDD-- 163 (666)
Q Consensus 97 ~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 163 (666)
.. ++. ..+..+...+...|++++|+..|+++........ .+++.++.+|...|++++|...|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 106 EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 121 1233566777777888999999988887433211 2578888889999999999998888873
Q ss_pred ----CCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHHHhhhccCC-hhHHHHHHHHHHh
Q 038606 164 ----CNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS----GFAS-DAAMYDVIIGGLCKNKQ-LEMALQLYSEMKG 233 (666)
Q Consensus 164 ----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 233 (666)
...+....++..+...|.+.|++++|.+.+++..+. +..+ -..+|..+..+|.+.|+ +++|...|++...
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 111223346778888889999999999988877642 2112 25678888999999995 5899988888765
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=6e-09 Score=96.00 Aligned_cols=188 Identities=10% Similarity=-0.065 Sum_probs=136.0
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+.++.+.|++++|+..++.++... |.++..+..++.+|.+.|++++|...|+++++.+ |.+...+..++.++...|+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 557788999999999999999865 4478899999999999999999999999999987 7788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERM 161 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (666)
+++|...|+++.+.++. +...+...+.... ...++...........+.++.+...+...+ .|++++|.+.+++.
T Consensus 88 ~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 88 YDEAIANLQRAYSLAKE-QRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRN 161 (281)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG
T ss_pred HHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 99999999999886543 2222222222221 122222222222334445666655554443 69999999999998
Q ss_pred hhCCCCcchhhHHHHHHhhhcc-CCHHHHHHHHHHHHhC
Q 038606 162 DDCNIRLNEKTFCVLIHGFVKK-SRVDKALQLFDKMTKS 199 (666)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~ 199 (666)
.+.++ .+......+...+.+. +.+++|.++|..+.+.
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 162 HEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88742 2344444444445554 6788999999987653
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.87 E-value=2.1e-08 Score=84.00 Aligned_cols=109 Identities=9% Similarity=-0.122 Sum_probs=87.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
+...+..++..+...|++++|+..|+++++.. |.+...|..++.+|.+.|++++|...|+++++.++. +...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 45567788888888888888888888888877 667888888888888888888888888888887654 677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSI 140 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 140 (666)
.+|...|++++|+..|+++....|.++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 88888888888888888888877766665433
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.86 E-value=2.1e-08 Score=81.04 Aligned_cols=103 Identities=11% Similarity=-0.102 Sum_probs=75.9
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
+.++..+..++..+...|++++|...|..+++.+ |.+...|..++.++...|++++|...|+++++.++. +...+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 3456677777777888888888888888777776 566777777777777788888888877777776544 5666777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
+..++...|++++|+..|+++....|
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 77777777777777777777766544
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=1.2e-07 Score=88.14 Aligned_cols=165 Identities=11% Similarity=0.048 Sum_probs=128.8
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C---
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN------YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY-D--- 100 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~--- 100 (666)
..+...+..+...|++++|.+.+...++.. +... ..+..++..+...|++++|...|+++++..... +
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345567888999999999999999998875 2222 234556777889999999999999998643221 1
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHHHH---HcCCCCc----hHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-----C
Q 038606 101 -KYTLTPLLQVYCNSGQFDKALSVFNEII---DHGWVDE----HVFSILLVAFSKWGEVDKACELIERMDDCNI-----R 167 (666)
Q Consensus 101 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~ 167 (666)
..+++.+...|...|++++|+..|+++. +..+.++ .++..++.+|...|++++|...+++..+... .
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3477888999999999999999999987 4443332 5788899999999999999999999876421 1
Q ss_pred cchhhHHHHHHhhhccCCHHHH-HHHHHHHH
Q 038606 168 LNEKTFCVLIHGFVKKSRVDKA-LQLFDKMT 197 (666)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~ 197 (666)
.-..++..+...|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1156778888999999999999 77787765
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.85 E-value=6.8e-08 Score=77.00 Aligned_cols=108 Identities=11% Similarity=-0.052 Sum_probs=84.5
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cccH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN---YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD---KYTL 104 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 104 (666)
..+..++..+...|++++|...|+.+.+.. |.+. ..+..++.++.+.|++++|...|+++++..+. + +.++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~ 79 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGL 79 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHH
Confidence 456778888888999999999999988876 4444 57888888888999999999999988887544 3 4557
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHH
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSIL 141 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 141 (666)
..+..++...|++++|+..|+++....|.++.+....
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 7778888888888888888888888877665544433
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=2.7e-07 Score=85.73 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=99.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-----ccHHH
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNY----SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK-----YTLTP 106 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 106 (666)
.+..+...|++++|..+++++.+.....|+.. .+..++..+...|++++|...|+++++.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35666777777777777777776442112211 2223556666667777777777777764332222 14666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc---C-C---CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCcchhhHH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDH---G-W---VDEHVFSILLVAFSKWGEVDKACELIERMDDCN-----IRLNEKTFC 174 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~---~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~ 174 (666)
+..+|...|++++|+..|+++.+. . . ....++..++.+|.+.|++++|...+++.++.. ...-..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777776631 1 1 112356677777777777777777777765421 111144566
Q ss_pred HHHHhhhccCC-HHHHHHHHHHHHh
Q 038606 175 VLIHGFVKKSR-VDKALQLFDKMTK 198 (666)
Q Consensus 175 ~l~~~~~~~~~-~~~A~~~~~~~~~ 198 (666)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66677777773 5777777777664
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=2.8e-08 Score=79.48 Aligned_cols=120 Identities=10% Similarity=-0.019 Sum_probs=81.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
.+...+..++..+...|++++|...|+++.+..+. +...+..+...+...|++++|++.++++....|.++.++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 44556777777777777777777777777766433 55666677777777777777777777777776666667777777
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 144 AFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
++...|++++|...++++.+.++ .+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 77777777777777777766542 244455555555554444
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=2e-08 Score=78.71 Aligned_cols=98 Identities=12% Similarity=-0.019 Sum_probs=64.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.+..++..+.+.|++++|...|+++++.+ |.+...|..++.++...|++++|...|+++++.++. +...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45566666777777777777777777666 556667777777777777777777777777666544 555666666666
Q ss_pred HhcCChhHHHHHHHHHHHcCC
Q 038606 112 CNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~ 132 (666)
...|++++|+..|+++.+.+|
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 677777777777776666554
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4.3e-08 Score=77.73 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+...+..++..+.+.|++++|...|+++++.++. +...+..+..+|.+.|++++|+..|+++.+.+|.++.++..++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4567788888899999999999999999887654 778888888889999999999999999999888888888899999
Q ss_pred HHhcCChhhHHHHHHHHhhCC
Q 038606 145 FSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+...|++++|.+.|+++.+.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999998888753
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=8.6e-08 Score=75.78 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF 145 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (666)
...+..++..+...|++++|...|+++.+..+. +..++..+...+...|++++|...|+++....|.++.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567777777888888888888888888776433 5666777777777778888888888877777776677777777777
Q ss_pred HhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhh
Q 038606 146 SKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGF 180 (666)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (666)
...|++++|...++++.+.++ .+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 777777777777777766542 2334444444333
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=1e-07 Score=84.98 Aligned_cols=192 Identities=8% Similarity=-0.057 Sum_probs=132.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHH-------HHHHHhcCChhhHHHHHHHHhhCCCC-----cc-----------
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSIL-------LVAFSKWGEVDKACELIERMDDCNIR-----LN----------- 169 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~----------- 169 (666)
..+++..|.+.|.++...+|...++|..+ ...+...+...+++..+.......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57899999999999999998888888888 67777777778887777777663110 01
Q ss_pred ----hhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 038606 170 ----EKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSK 245 (666)
Q Consensus 170 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (666)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... |+...-
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~-- 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLA-- 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHH--
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccH--
Confidence 1223345566778899999999998887654 43335666667888889999999988755442 222100
Q ss_pred HHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCC--C
Q 038606 246 LITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSP--N 323 (666)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 323 (666)
...+..+..++...|++++|++.|++..... ..| .
T Consensus 171 ---------------------------~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~----------------~~P~~~ 207 (282)
T 4f3v_A 171 ---------------------------GAAGVAHGVAAANLALFTEAERRLTEANDSP----------------AGEACA 207 (282)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST----------------TTTTTH
T ss_pred ---------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC----------------CCcccc
Confidence 0345667777888888888888888776432 113 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038606 324 TSSFDIIINTLLKDGKLDLALSLFREMTQIG 354 (666)
Q Consensus 324 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 354 (666)
.........++.+.|+.++|...|+++....
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455666677777788888888888877765
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.80 E-value=2e-08 Score=87.76 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=37.2
Q ss_pred hhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcC----CCCCChhhHHHHHHHHHhcCChh
Q 038606 8 ARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREG----LCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
.|++++|+..++.+.. .++....++..++..+...|++++|...|+++.+.. ..+....++..++..+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3445555553333322 111234444555555555555555555555544410 00112234444455555555555
Q ss_pred HHHHHHHHHHh
Q 038606 84 LVEMRLKEMQD 94 (666)
Q Consensus 84 ~A~~~~~~~~~ 94 (666)
+|...+++..+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=9.1e-08 Score=78.44 Aligned_cols=116 Identities=15% Similarity=-0.056 Sum_probs=87.8
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL 104 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 104 (666)
.+...+..++..+...|++++|...|+++.+.. |.+ ...+..++.++...|++++|...++++.+..+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 355667778888888888888888888888765 333 667788888888888888888888888776543 56677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
..+..++...|++++|...|+++....|.++.++..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 777788888888888888888888877777666665555443
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=3.4e-08 Score=86.22 Aligned_cols=121 Identities=13% Similarity=-0.036 Sum_probs=73.3
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCcccHHHHHHHHHhc
Q 038606 40 LGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY----G-WGYDKYTLTPLLQVYCNS 114 (666)
Q Consensus 40 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~ 114 (666)
+...|++++|.+.++.+.... +....++..++..+...|++++|...++++.+. + .+....++..+...+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 345788888888655554422 245667888888888888888888888887662 1 111334556666777777
Q ss_pred CChhHHHHHHHHHHHc---CCCC----chHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 115 GQFDKALSVFNEIIDH---GWVD----EHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
|++++|.+.+++.... .+.+ ..++..++..+...|++++|...+++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777777766543 2111 1234555556666666666666665554
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.77 E-value=2.1e-08 Score=99.74 Aligned_cols=127 Identities=12% Similarity=-0.051 Sum_probs=108.0
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV 110 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (666)
..+..++..+.+.|++++|.+.|+++++.. |.+..+|..++.+|.+.|++++|...|+++++.++. +..++..+..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 83 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS 83 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345556778889999999999999999987 678899999999999999999999999999998654 77888899999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH--HHhcCChhhHHHHHHH
Q 038606 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA--FSKWGEVDKACELIER 160 (666)
Q Consensus 111 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 160 (666)
|...|++++|++.|+++.+.+|.+..++..+..+ +.+.|++++|++.+++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999988888888888777 8888999999999983
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=7.3e-08 Score=74.47 Aligned_cols=102 Identities=11% Similarity=-0.102 Sum_probs=50.0
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCcccHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG-YDKYTLTPL 107 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 107 (666)
++..+..++..+...|++++|...|+++.+.. |.+...+..++.++...|++++|...|+++.+..+. .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34445555555555555555555555555544 344445555555555555555555555555543211 023344444
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHcCC
Q 038606 108 LQVYCNS-GQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 108 ~~~~~~~-~~~~~A~~~~~~~~~~~~ 132 (666)
..++... |++++|++.++.+....|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 4444455 555555555555444433
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=9.2e-08 Score=75.66 Aligned_cols=98 Identities=11% Similarity=0.001 Sum_probs=62.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------cccHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD------KYTLT 105 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~ 105 (666)
.+..++..+.+.|++++|++.|+++++.+ |.+..+|..++.+|.+.|++++|...|+++++.++... ..++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45567777777777777777777777766 56677777777777777777777777777766432211 12344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 131 (666)
.+..++...|++++|++.|++.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44555555566666666666555543
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=9.3e-08 Score=73.85 Aligned_cols=103 Identities=11% Similarity=-0.062 Sum_probs=94.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--DEHVFSI 140 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 140 (666)
|.+...+..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|++.|+++.+..+. +..++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 567788999999999999999999999999987654 6778888999999999999999999999999988 8899999
Q ss_pred HHHHHHhc-CChhhHHHHHHHHhhCCC
Q 038606 141 LLVAFSKW-GEVDKACELIERMDDCNI 166 (666)
Q Consensus 141 l~~~~~~~-g~~~~A~~~~~~~~~~~~ 166 (666)
++.++... |++++|.+.++++....+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999999 999999999999998754
No 166
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=1.3e-06 Score=80.51 Aligned_cols=216 Identities=9% Similarity=-0.029 Sum_probs=163.4
Q ss_pred hHHHHHHHHhhhhcCCCcchHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC-
Q 038606 13 PLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGL----------VEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS- 81 (666)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (666)
+|..+...++... |-+..+++....++...++ +++++.+++.++..+ |.+..+|+--..++...|.
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcc
Confidence 5677777777644 3355666665556555444 689999999999988 7899999999888888884
Q ss_pred -hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc-----------
Q 038606 82 -VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQ-FDKALSVFNEIIDHGWVDEHVFSILLVAFSKW----------- 148 (666)
Q Consensus 82 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 148 (666)
++++...++++++.++. |..+|+--.-++...|. ++++++.++++...+|.+..+|+....++...
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 89999999999998766 88888877777777788 59999999999999999999999888877665
Q ss_pred ---CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc-----------CCHHHHHHHHHHHHhCCCCccHHHHHHHHH-
Q 038606 149 ---GEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK-----------SRVDKALQLFDKMTKSGFASDAAMYDVIIG- 213 (666)
Q Consensus 149 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 213 (666)
+.++++++.+.+.+..+ +-|...|+-+-..+.+. +.++++++.++++.+.. |.+...+..++.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~ 281 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWCLLTIILL 281 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHH
Confidence 45789999999999876 34777777554444443 45789999999998874 333333333222
Q ss_pred --hhhccCChhHHHHHHHHHHhC
Q 038606 214 --GLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 214 --~~~~~g~~~~a~~~~~~~~~~ 234 (666)
..-..|..+++..++.++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHHh
Confidence 222467778888999998873
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.75 E-value=7.5e-08 Score=76.17 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-------hHHH
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDE-------HVFS 139 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~ 139 (666)
.++..++..+.+.|++++|+..|+++++.++. +...+..+..+|.+.|++++|++.|+++++.+|.+. .++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45667777777888888888888877776554 666777777777777888888777777766544222 2455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 140 ILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.++.++...|++++|++.|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666666677776666666654
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=2.7e-07 Score=71.94 Aligned_cols=100 Identities=11% Similarity=-0.053 Sum_probs=77.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+...+..++..+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++....|.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4556777788888888888888888888776543 666777777788888888888888888888777777777888888
Q ss_pred HHhcCChhhHHHHHHHHhhCC
Q 038606 145 FSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+...|++++|.+.+++..+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 888888888888888877764
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.71 E-value=2.8e-08 Score=98.57 Aligned_cols=124 Identities=8% Similarity=-0.086 Sum_probs=73.5
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---------------NYSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
....+..++..+.+.|++++|...|+++++.. |.+ ...|..++.+|.+.|++++|...|++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556667777777777777777777777654 233 3555566666666666666666666666
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHH
Q 038606 94 DYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKAC 155 (666)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (666)
+.++. +...+..+..+|...|++++|+..|+++.+.+|.+..++..+..++...|+.+++.
T Consensus 345 ~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 45555556666666666666666666666665555556666666666555555544
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.71 E-value=8.1e-08 Score=75.16 Aligned_cols=98 Identities=9% Similarity=-0.095 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
..+..++..+.+.|++++|...|+++++..+. +...+..+..++...|++++|+..|+++...+|.++.++..++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35667777888888888888888888887554 67777778888888888888888888888888878888888888888
Q ss_pred hcCChhhHHHHHHHHhhCC
Q 038606 147 KWGEVDKACELIERMDDCN 165 (666)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~ 165 (666)
..|++++|...++++++.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888888887653
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=6.1e-08 Score=77.45 Aligned_cols=112 Identities=11% Similarity=0.003 Sum_probs=82.3
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CC----ccc
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG--YD----KYT 103 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~ 103 (666)
+..+..++..+...|++++|...|+++.+.. |.+...+..++.++...|++++|...|+++.+..+. ++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567778888888888888888888888876 567778888888888888888888888888775432 11 556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 104 LTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 104 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+..+..++...|++++|.+.|+++....+ ++.....+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 66677777777888888888887777665 45555444443
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=1.5e-07 Score=78.68 Aligned_cols=102 Identities=15% Similarity=-0.016 Sum_probs=89.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
+.+...+..++..+.+.|++++|...|+++++..+. +...+..+..+|...|++++|+..|+++...+|.++.++..++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345678888899999999999999999999987655 7788888899999999999999999999999888888999999
Q ss_pred HHHHhcCChhhHHHHHHHHhhCC
Q 038606 143 VAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
.++...|++++|.+.|+++++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988764
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.67 E-value=2.8e-07 Score=74.26 Aligned_cols=101 Identities=11% Similarity=-0.080 Sum_probs=86.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
+.+...+..++..+...|++++|...|+++++.++. +...+..+..++...|++++|+..++++...+|.++.++..++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 467788888889999999999999999998887654 6778888888888889999999999998888888888888888
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 038606 143 VAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.++...|++++|...|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888889999998888888765
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.65 E-value=1.3e-07 Score=78.98 Aligned_cols=105 Identities=11% Similarity=-0.085 Sum_probs=73.2
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHc--------CC--------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKRE--------GL--------CVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
...+...+..+.+.|++++|...|..+++. .. .|.+...|..++.+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677888999999999999999998876 10 02234566667777777777777777777777
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038606 94 DYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDE 135 (666)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 135 (666)
+.++. +...+..+..+|...|++++|+..|+++...+|.++
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 66443 556666667777777777777777777776666554
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.63 E-value=5.1e-08 Score=76.04 Aligned_cols=86 Identities=8% Similarity=-0.149 Sum_probs=41.5
Q ss_pred hhhhchHHHHHHHHhhhh--cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHH
Q 038606 8 ARRIAPLRVLAQDVVKSR--CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLV 85 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (666)
.|++++|+..++.++..+ .|.++.++..++.+|...|++++|...|+++++.+ |.+..++..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555442 23344445555555555555555555555555544 34444555555555555555555
Q ss_pred HHHHHHHHhc
Q 038606 86 EMRLKEMQDY 95 (666)
Q Consensus 86 ~~~~~~~~~~ 95 (666)
...|+++++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=6.9e-07 Score=73.07 Aligned_cols=114 Identities=13% Similarity=-0.036 Sum_probs=90.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD---KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFS 139 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 139 (666)
+.+...+..++..+...|++++|...|+++++..+. + ...+..+...|...|++++|+..++++....|.++.++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456778888899999999999999999999886433 2 567778888888999999999999999888888888888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHH
Q 038606 140 ILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIH 178 (666)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 178 (666)
.++.++...|++++|...|++..+.++ .+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHH
Confidence 888899999999999999988887642 23444443333
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.59 E-value=2.7e-07 Score=88.26 Aligned_cols=123 Identities=13% Similarity=-0.066 Sum_probs=93.0
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHH----------------cCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKR----------------EGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
..+..++..+.+.|++++|+..|+++++ .. +.+...|..++.+|.+.|++++|...++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3477788999999999999999999887 32 34556777777788888888888888888877
Q ss_pred cCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHH
Q 038606 95 YGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACE 156 (666)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (666)
.++. +...+..+..+|...|++++|+..|+++.+..|.+..++..+..++...++.+++.+
T Consensus 302 ~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 566777777777788888888888888877777777777777777776666665543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.58 E-value=3.1e-08 Score=98.21 Aligned_cols=145 Identities=11% Similarity=-0.025 Sum_probs=96.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--------------cccHHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD--------------KYTLTPLL 108 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~ 108 (666)
.+++++|...|+...+.. +.....+..++..+.+.|++++|...|+++++..+... ...+..+.
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 345566777776665544 34566888889999999999999999999988644421 35566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDK 188 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (666)
.+|.+.|++++|+..|++++..+|.+..++..++.++...|++++|+..|+++++.++ .+...+..+..++.+.++.++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777666666777777777777777777777777766542 244455555555555555555
Q ss_pred HH
Q 038606 189 AL 190 (666)
Q Consensus 189 A~ 190 (666)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.57 E-value=1.2e-07 Score=73.85 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=82.4
Q ss_pred ccCChHHHHHHHHHHHHcCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHH
Q 038606 42 SVGLVEEANMLFDQVKREGLC-VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKA 120 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 120 (666)
..|++++|+..|+++++.+.. |.+..++..++.+|...|++++|...|+++++.++. +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999987310 456778999999999999999999999999998765 688888999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHH
Q 038606 121 LSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
+..|+++....|.++........
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~a 103 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQA 103 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999998877766544333
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=1.2e-06 Score=69.65 Aligned_cols=97 Identities=11% Similarity=-0.011 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chHHHHH
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK---YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD---EHVFSIL 141 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 141 (666)
.+..++..+...|++++|...|+++.+..+. +. ..+..+..++...|++++|+..|+++....|.+ +.++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4566777888888888888888888876544 33 466777788888888888888888888887776 6667888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC
Q 038606 142 LVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+.++...|++++|...|+++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888888887764
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.57 E-value=1.9e-07 Score=74.53 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------chHH
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD-------EHVF 138 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~ 138 (666)
...+..++..+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++....+.+ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 446666777777777777777777777766433 55666667777777777777777777766654433 4456
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 139 SILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
..++.++...|++++|.+.|+++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666666666666666654
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.3e-06 Score=82.82 Aligned_cols=204 Identities=12% Similarity=0.024 Sum_probs=147.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh---------------hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN---------------YSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
|..-..-++.+.+.|++++|.+.|..+++......+. .++..++..|...|++++|.+.+.++.+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445556788899999999999999999876211111 2377889999999999999999998876
Q ss_pred cCCCC-Cc----ccHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 95 YGWGY-DK----YTLTPLLQVYCNSGQFDKALSVFNEIIDHG------WVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 95 ~~~~~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
.-... +. .+.+.+...+...|+++.|..+++...... +....++..++..+...|++++|..+++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 42111 11 123334455556789999999998876431 12235678899999999999999999988764
Q ss_pred CC-----CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC----CCCcc--HHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 164 CN-----IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS----GFASD--AAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 164 ~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
.- .+....++..++..|...|++++|...+++.... +.++. ...+..++..+...|++++|...|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 21 1123456778888999999999999999886542 21222 3456777888889999999999887775
Q ss_pred h
Q 038606 233 G 233 (666)
Q Consensus 233 ~ 233 (666)
.
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.53 E-value=2.3e-07 Score=87.88 Aligned_cols=149 Identities=11% Similarity=0.016 Sum_probs=75.7
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
...+..++..+.+.|++++|...|+++++.. |+... +...|+++++...+. ...+..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3456778888888888888888888888765 33321 112222222222111 124566677
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHh-hhccCCHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHG-FVKKSRVDK 188 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 188 (666)
+|.+.|++++|+..+++++..+|.+..++..++.++...|++++|...|+++.+..+ .+...+..+... ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777776542 234444444443 223456667
Q ss_pred HHHHHHHHHhC
Q 038606 189 ALQLFDKMTKS 199 (666)
Q Consensus 189 A~~~~~~~~~~ 199 (666)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777776654
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.52 E-value=2.8e-06 Score=85.99 Aligned_cols=176 Identities=11% Similarity=-0.005 Sum_probs=146.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS----------VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
....++|++.++.+++.+ |.+..+|+.-..++...|+ ++++.+.++++++.+++ +..+|..-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344578899999999998 7788899998888888887 99999999999998776 8888888877888
Q ss_pred hcC--ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC-ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc------
Q 038606 113 NSG--QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG-EVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK------ 183 (666)
Q Consensus 113 ~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 183 (666)
+.| +++++++.++++.+.++.+..+|+....++...| .++++++.++++++.++ .|...|+....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccc
Confidence 888 6799999999999999999999999999999999 89999999999999874 4777787766655442
Q ss_pred --------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhH
Q 038606 184 --------SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEM 223 (666)
Q Consensus 184 --------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (666)
+.++++++.+++..... |.|...|..+...+.+.+..++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999888765 6678888887777777766443
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=3.4e-07 Score=73.35 Aligned_cols=99 Identities=13% Similarity=-0.041 Sum_probs=62.4
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-------Chh-----hHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP-------NNY-----SYNCLLEALCKSCSVDLVEMRLKEMQDY--- 95 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 95 (666)
..+...+..+.+.|++++|+..|+++++.. |. +.. .|..++.++.+.|++++|...|+++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345667788888899999999999988876 33 222 5666666666666666666666666654
Q ss_pred ----CCCCCcccH----HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 96 ----GWGYDKYTL----TPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 96 ----~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
++. +...| .....++...|++++|+..|+++.+..|
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 332 33444 5555555555555555555555555433
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=3.6e-07 Score=90.93 Aligned_cols=120 Identities=8% Similarity=-0.139 Sum_probs=101.5
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
|.++.+.|++++|+..++.++... |.++.++..++.+|.+.|++++|++.|+++++.+ |.+..++..++.+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 566778899999999999999864 4478899999999999999999999999999987 6788999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHH--HHhcCChhHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQV--YCNSGQFDKALSVFN 125 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 125 (666)
+++|.+.|+++++..+. +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999997654 55566666655 888899999999998
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=6.4e-07 Score=74.62 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhc--------CC---------CCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDY--------GW---------GYDKYTLTPLLQVYCNSGQFDKALSVFNEI 127 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 127 (666)
....+...+..+.+.|++++|...|.++++. ++ +.+...+..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3557888899999999999999999999875 11 113356777888888999999999999999
Q ss_pred HHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 128 IDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+..+|.++.++..++.++...|++++|...|++.+..+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 99888888889999999999999999999999888874
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.1e-05 Score=76.64 Aligned_cols=205 Identities=11% Similarity=-0.009 Sum_probs=147.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc----------------ccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK----------------YTLTPLLQVYCNSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 131 (666)
+...-++.+.+.|++++|.+.|.++++....... ..+..++..|...|++++|.+.+.++.+..
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3444567788999999999999999886543221 136778999999999999999999887643
Q ss_pred CCCc------hHHHHHHHHHHhcCChhhHHHHHHHHhhC----C-CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC-
Q 038606 132 WVDE------HVFSILLVAFSKWGEVDKACELIERMDDC----N-IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS- 199 (666)
Q Consensus 132 ~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 199 (666)
+... .+...+...+...|+++.|..+++..... + ...-..++..+...|...|++++|..+++.+...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 2211 23445566777789999999999887642 1 1223456778899999999999999999987642
Q ss_pred -C---CCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCcc
Q 038606 200 -G---FASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG--ITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMT 273 (666)
Q Consensus 200 -~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (666)
+ -+.....+..++..|...|++++|..++++..... +..+.... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-----------------------------~ 216 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV-----------------------------A 216 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-----------------------------H
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH-----------------------------H
Confidence 1 12235578889999999999999999998876521 11111000 1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 274 LLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
..+..+...+...|++++|...|.....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667778889999999988877654
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=2.2e-06 Score=68.67 Aligned_cols=99 Identities=11% Similarity=0.097 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------C-----cccHHHHHHHHHhcCChhHHHHHHHHHHHc----
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY------D-----KYTLTPLLQVYCNSGQFDKALSVFNEIIDH---- 130 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 130 (666)
...+...+..+.+.|++++|...|+++++..+.. + ...|..+..++.+.|++++|+..+++++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3456778888999999999999999998875441 1 126777777777888888888888887777
Q ss_pred ---CCCCchHH----HHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 131 ---GWVDEHVF----SILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 131 ---~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
+|.+..+| ...+.++...|++++|+..|++.++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77666677 77777777777777777777777654
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=1.4e-06 Score=72.49 Aligned_cols=133 Identities=17% Similarity=0.069 Sum_probs=79.4
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C----
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN----NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY-D---- 100 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---- 100 (666)
..++..++..+...|++++|...|+++.+.....++ ..++..++..+...|++++|...++++.+..... +
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677888888888888888888887765310011 1367777778888888888888887776532110 1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CC----chHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW--VD----EHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
..++..+...+...|++++|.+.++++..... .+ ..++..++..+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 23455556666666777777777666554311 01 1234444555555555555555555544
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=1.8e-06 Score=82.58 Aligned_cols=122 Identities=8% Similarity=0.002 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcC---------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYG---------------WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 131 (666)
..+..++..+.+.|++++|...|+++++.- .+.+..++..+..+|.+.|++++|++.++++++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 457778888999999999999999888620 11134455556666666666666666666666666
Q ss_pred CCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 132 WVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
|.++.++..++.++...|++++|.+.|+++.+..+ .+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665532 2344444444444444444433
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=2.8e-06 Score=70.68 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CC----c
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY-D----KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW--VD----E 135 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~ 135 (666)
.++..++..+...|++++|...++++.+..... + ..++..+...+...|++++|.+.++++....+ .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 466777778888888888888888876642211 1 13455566667777777777777776654321 11 2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 136 HVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
.++..++.++...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 234445555555555555555555544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.27 E-value=7e-07 Score=68.68 Aligned_cols=65 Identities=20% Similarity=0.020 Sum_probs=38.9
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
...+..++..+...|++++|.+.|+++++.. |.+...+..++.++.+.|++++|...|+++++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445556666666666666666666666555 4455566666666666666666666666665543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=1.9e-06 Score=81.60 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
....+..++..+.+.|++++|...|+++++..+. .. .+...|++.++...+. ..++..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~--~~-------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD--DF-------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH--HH-------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc--ch-------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 3445677777888888888888888888775322 11 1223344444433221 2378899999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHh-hhccCChhH
Q 038606 145 FSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGG-LCKNKQLEM 223 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 223 (666)
+.+.|++++|+..++++++.+ +.+...+..+..+|...|++++|+..|++..+.. +.+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 3477889999999999999999999999998764 4455566666655 334667888
Q ss_pred HHHHHHHHHhC
Q 038606 224 ALQLYSEMKGS 234 (666)
Q Consensus 224 a~~~~~~~~~~ 234 (666)
+..+|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 99999998764
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=6.2e-07 Score=69.01 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=86.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------chH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD------EHV 137 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 137 (666)
++...+..++..+...|++++|...|+++++..+. +...+..+..++...|++++|++.|+++....|.+ ..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45678899999999999999999999999998655 77888999999999999999999999999998877 677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 138 FSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
+..++.++...|+.+.|.+.++++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 8888999999999998887776554
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.24 E-value=2.1e-06 Score=68.58 Aligned_cols=40 Identities=8% Similarity=-0.035 Sum_probs=27.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 42 SVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
+.+.+++|.+.|+.+.+.+ |.+...|..++.++...|+++
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccc
Confidence 3455677777777777776 567777777777777666654
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=1.4e-05 Score=80.94 Aligned_cols=172 Identities=7% Similarity=-0.055 Sum_probs=143.8
Q ss_pred chHHHHHHHHhhhhcCCCcchHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC-
Q 038606 12 APLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGL----------VEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC- 80 (666)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 80 (666)
++|...++.++... |-...+|+....++...|+ ++++++.++.+++.+ |.+..+|.--.-++.+.|
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccc
Confidence 46677777777744 4467788888888888887 999999999999998 789999999999999999
Q ss_pred -ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc----------
Q 038606 81 -SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG-QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW---------- 148 (666)
Q Consensus 81 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 148 (666)
+++++.+.++++++.++. +..+|+--..++.+.| .++++++.++++.+.+|.+..+|+....++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999998766 8888888777777888 899999999999999999999999988877763
Q ss_pred ----CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHH
Q 038606 149 ----GEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDK 188 (666)
Q Consensus 149 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (666)
+.++++.+.+.+++..+ +-+...|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999999876 3477788877777766666443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.23 E-value=5.3e-06 Score=60.83 Aligned_cols=63 Identities=16% Similarity=-0.002 Sum_probs=33.0
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
..+..++..+...|++++|...|+++++.. |.+..++..++.++.+.|++++|...|+++.+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344455555555555555555555555544 344445555555555555555555555555544
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.19 E-value=9.3e-06 Score=59.46 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+...+..++..+...|++++|...|+++++..+. +..++..+..++...|++++|+..|+++...+|.++.++..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4567888888888889999999999888887544 667777888888888888888888888888888777777777777
Q ss_pred HHhcC
Q 038606 145 FSKWG 149 (666)
Q Consensus 145 ~~~~g 149 (666)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66543
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.19 E-value=5.7e-06 Score=63.95 Aligned_cols=78 Identities=5% Similarity=-0.167 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 14 LRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
++..++.++... |.++..+..++.+|...|++++|...|+++++.+ |.+..+|..++.++...|++++|...|++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444422 2244444445555555555555555555544444 3344444444455555555555555554444
Q ss_pred h
Q 038606 94 D 94 (666)
Q Consensus 94 ~ 94 (666)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=2.5e-05 Score=62.45 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChhHH
Q 038606 45 LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN----SGQFDKA 120 (666)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 120 (666)
++++|.++|+++.+.+ .++.. +...|...+.+++|.++|++..+.| ++..+..+...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4455555555555543 12222 4444444445555555555555432 33444444444444 4455555
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHh----cCChhhHHHHHHHHhhC
Q 038606 121 LSVFNEIIDHGWVDEHVFSILLVAFSK----WGEVDKACELIERMDDC 164 (666)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 164 (666)
.+.|++..+.+ ++.++..+...|.. .+++++|.+.|++..+.
T Consensus 81 ~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555554443 44444555555544 44555555555555444
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.13 E-value=4.3e-06 Score=66.76 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=77.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh----------hHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQF----------DKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
.+.+.+++|.+.+++.++.++. +...|..+..++...+++ ++|+..|+++++.+|.+..+|..++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3556788999999999988766 888888888888877765 59999999999999988999999999998
Q ss_pred hcC-----------ChhhHHHHHHHHhhCCCCcchhhHHHHH
Q 038606 147 KWG-----------EVDKACELIERMDDCNIRLNEKTFCVLI 177 (666)
Q Consensus 147 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 177 (666)
..| ++++|++.|+++++.+ |+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 775 7888888888888864 4444444333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=9.9e-06 Score=62.57 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 038606 47 EEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNE 126 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 126 (666)
+.|...|+++++.+ |.+...+..++.++...|++++|...|+++++.++. +...+..+..+|...|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788999999887 678899999999999999999999999999998654 677888999999999999999999999
Q ss_pred HHHcCC--CCchHHHHHHHHHHhcC
Q 038606 127 IIDHGW--VDEHVFSILLVAFSKWG 149 (666)
Q Consensus 127 ~~~~~~--~~~~~~~~l~~~~~~~g 149 (666)
+....+ .+......+...+...+
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHhc
Confidence 987654 24444555555444433
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.11 E-value=9.3e-05 Score=59.07 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=97.9
Q ss_pred hhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh----cCChh
Q 038606 8 ARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK----SCSVD 83 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 83 (666)
.++.++|...++.....+ ++... +...|...+..++|.++|+++.+.+ +...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHH
Confidence 467889999999998877 34444 8999999999999999999999864 78899999999998 89999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCN----SGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 131 (666)
+|..+|++..+.| ++..+..|...|.. .+++++|.+.|++..+.+
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999999999864 66778888899988 899999999999999886
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.07 E-value=9.4e-06 Score=60.69 Aligned_cols=67 Identities=12% Similarity=-0.108 Sum_probs=55.0
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
|.++.++..++.+|...|++++|+..|+++++.+ |.+..+|..++.+|...|++++|...|++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567778888888888888888888888888877 667778888888888888888888888888764
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=3.2e-05 Score=76.22 Aligned_cols=126 Identities=10% Similarity=-0.038 Sum_probs=83.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCC--C-C---CChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-CcccH
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGL--C-V---PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY-----GWG-Y-DKYTL 104 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~--~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~ 104 (666)
..+..+|++++|+.+++++++... + + ....+++.|+.+|...|++++|..+++++++. |.. | -..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 446678899999988888775421 1 1 12356788888888888888888888887652 222 1 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCchH---HHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIID-----HGWVDEHV---FSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
+.|...|...|++++|+.+++++.. .|+..|.+ ...+..++...|.+++|+.+|.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888877654 24444432 34455566666666666666666644
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.93 E-value=3.9e-05 Score=57.24 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=50.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 130 (666)
|.+...+..++.+|...|++++|...|+++++.++. +...+..+..+|...|++++|++.|+++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456777788888888888888888888888777554 5667777778888888888888888777654
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.86 E-value=2e-05 Score=58.81 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=56.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNY-SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN 113 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (666)
..+..+...|++++|...|+.+++.+ |.+.. .+..++.++...|++++|...|+++++.++. +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH-------
Confidence 45667777788888888888887776 56666 7777888888888888888888888776543 3332211
Q ss_pred cCChhHHHHHHHHHHHc
Q 038606 114 SGQFDKALSVFNEIIDH 130 (666)
Q Consensus 114 ~~~~~~A~~~~~~~~~~ 130 (666)
+.+.++...|+++...
T Consensus 75 -~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYN 90 (99)
T ss_dssp -HHHHHHHHHHCCTTHH
T ss_pred -HHHHHHHHHHHHHhcc
Confidence 3445555555544433
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=2.8e-05 Score=76.61 Aligned_cols=126 Identities=8% Similarity=-0.033 Sum_probs=95.6
Q ss_pred hhHhhhhchHHHHHHHHhhhh-------cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCCChhhHHH
Q 038606 5 LSRARRIAPLRVLAQDVVKSR-------CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKRE-----GL-CVPNNYSYNC 71 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~~~~~ 71 (666)
+...|++++|+.++++++... .|....+++.++..|..+|+|++|..+++++++. +. .|....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556799999999998887662 2223456789999999999999999999998754 21 1222357889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc-----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038606 72 LLEALCKSCSVDLVEMRLKEMQDY-----GWGY--DKYTLTPLLQVYCNSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 72 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 130 (666)
|+..|...|++++|..+|+++++. |+.. ...+...+..++...+.+.+|..+|..+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998752 3331 1234455667788889999999999887653
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=0.00021 Score=65.96 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=34.7
Q ss_pred hhcCCCcchHHHHHHHHh--ccCC---hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHH
Q 038606 24 SRCFMSPGALGFLIRCLG--SVGL---VEEANMLFDQVKREGLCVPNNYSYNCLLEALC 77 (666)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~--~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (666)
.+.|.++++|...+++.. ..++ ..+|..+|+++++.+ |.....|..+.-+|.
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDI 244 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 456667888876665443 3333 478888888888887 566677776666554
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.76 E-value=0.00016 Score=52.57 Aligned_cols=71 Identities=11% Similarity=-0.035 Sum_probs=54.4
Q ss_pred cCCCcchHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038606 26 CFMSPGALGFLIRCLGSVGL---VEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG 98 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 98 (666)
.|.+++++..++.++...++ .++|..+|+++++.+ |.+..+...++..+.+.|++++|...|+++++.+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35577778888877764444 688888888888877 677888888888888888888888888888876544
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=5.5e-05 Score=56.34 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHH
Q 038606 71 CLLEALCKSCSVDLVEMRLKEMQDYGWGYDKY-TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVF 138 (666)
Q Consensus 71 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 138 (666)
..+..+.+.|++++|...|+++++.++. +.. .+..+..+|...|++++|++.|+++.+.+|.++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777777777766443 455 666667777777777777777777777766655554
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.001 Score=61.54 Aligned_cols=122 Identities=9% Similarity=-0.030 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc---C-----ChhhHHHHHHHHhh-CCCCcchhhHHHHHHhhhccCCHH
Q 038606 117 FDKALSVFNEIIDHGWVDEHVFSILLVAFSKW---G-----EVDKACELIERMDD-CNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-----~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
+.+|+.+|+++.+.+|....++..+..++... + ......+.++.... ...+.+..++..+...+...|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 35666666666666666555555444444311 1 01111111221111 111446667777666666678888
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHH
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEI 242 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (666)
+|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 295 ~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 295 ESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 8888888888774 67777777777778888888888888888774 455543
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=0.00058 Score=49.53 Aligned_cols=70 Identities=13% Similarity=0.041 Sum_probs=37.6
Q ss_pred CCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038606 63 VPNNYSYNCLLEALCKSCS---VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV 133 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 133 (666)
|+|+..+..++.++...++ .++|..+++++++.++. ++.....+...+.+.|++++|+..|+++...+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455555555555543333 45555555555555443 4445555555555555555555555555555443
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.49 E-value=6.7e-07 Score=83.54 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 273 TLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
+.+|..+..+|...+++.-|.-.--.+.-. + .-...++..|-..|-+++-+.+++....
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh-------------------a--deL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH-------------------A--DELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-------------------S--SCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc-------------------H--HHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 367777777888888777665554444321 1 1123456677788888888888887764
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 353 IGCMQNVFLYNNLIDGLCNSNRLEESYELLREM 385 (666)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 385 (666)
.. ......|+.|.-.|++- ++++..+.++..
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 32 35667777777666654 456655555443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.45 E-value=0.00066 Score=53.55 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCChhHHHH
Q 038606 47 EEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC---SVDLVEMRLKEMQDYG-WGYDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
..+.+.|....+.+ +++..+...+..++++++ +++++..+++.+.+.+ +..+...+..+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555554444 455566666666666655 4445666666665543 11123344444555556666666666
Q ss_pred HHHHHHHcCCCC
Q 038606 123 VFNEIIDHGWVD 134 (666)
Q Consensus 123 ~~~~~~~~~~~~ 134 (666)
.++.+++..|.+
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 666666665544
No 217
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.34 E-value=0.22 Score=52.45 Aligned_cols=312 Identities=10% Similarity=0.029 Sum_probs=164.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC---H--HHHH--H
Q 038606 331 INTLLKDGKLDLALSLFREMTQIGCMQNVF--LYNNLIDGLCNSNRLEESYELLREMEESGF--KPT---H--FTLN--S 399 (666)
Q Consensus 331 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~--~~~~--~ 399 (666)
.-+....|+.++++.+++.....+...+.. .-..+.-+....|...++..++.......- .-+ . ..-. .
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 345667888888888887765421112322 223333445566666677777776654321 001 1 1112 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHH
Q 038606 400 MFRCLCRRQDVVGALNLVRKMRVQGHEPWVK--HNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIG--GLI 475 (666)
Q Consensus 400 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 475 (666)
+..++...++ +++.+.+..+..... .... ....+...+.-.|+.+....++..+.+. .+......+.. ++.
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh
Confidence 2222333344 355555655554321 1111 1122334455667777777777776654 23333333333 444
Q ss_pred ccCChHHHHHHHHHHHhcCCCccHHHHH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 038606 476 DIKRVDLALELFRDICAHGCCPDVVAYN---IIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQ 552 (666)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (666)
..|+.+.+..+++.+... ..|. .-|. ++.-+|+..|+......++..+... ...+......+.-+....|+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHH
Confidence 678888888888888764 1222 2232 3445677889988888899988875 22233333333334455677777
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--ccCC-------hh
Q 038606 553 AMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRP-DDAIMLWNEMEEKGCAPNRITFMALITGLC--KCDR-------PR 622 (666)
Q Consensus 553 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~-------~~ 622 (666)
+.++++.+.+.. .|.+..-..+.-+....|.. .+++.++..+.. .++..+-...+.++. -.|. ..
T Consensus 613 v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva 687 (963)
T 4ady_A 613 VPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVA 687 (963)
T ss_dssp HHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHH
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHH
Confidence 777777665543 35555444555555555554 578888888875 345444433443333 3332 22
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 038606 623 AALVHFRMMKEK-GMKPDMFVFVALISAFLSELN 655 (666)
Q Consensus 623 ~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 655 (666)
..++.+...... .-.++...-..++......|.
T Consensus 688 ~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 688 DINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 333333333321 212344555555566655553
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.33 E-value=2.9e-06 Score=79.36 Aligned_cols=175 Identities=15% Similarity=0.114 Sum_probs=121.2
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
..|++|..++++..+.++..+|.+.|=+ ..|+..|..++.+..+.|.+++-.+++.-+.+. ..++.+=+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 3788999999999999988888776532 346667888999999999999999888777654 2356666788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
+-+|++.+++.+-.+.+. + .+..-...++.-+...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 123 i~ayAk~~rL~elEefl~-----~-~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-----G-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-----C-CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHHhhCcHHHHHHHHc-----C-CCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 999999988776544331 1 1233356677778888888888776654432 344556666777777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
.|.+.-.+ ..++.+|..+-.+|...+.+.-|.-+=-.+.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 76654333 2355667777777777777766655544444
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.24 E-value=0.016 Score=51.16 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHhhCCCC-cchhhHHHHHHhhhc-----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcc-CChhH
Q 038606 151 VDKACELIERMDDCNIR-LNEKTFCVLIHGFVK-----KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKN-KQLEM 223 (666)
Q Consensus 151 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 223 (666)
...|...++++++.++. .+...|..+...|.+ .|+.++|.+.|++..+.+...+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 57788888999887533 135678888888888 599999999999999876222477788888888884 99999
Q ss_pred HHHHHHHHHhCCCC--CCH
Q 038606 224 ALQLYSEMKGSGIT--PDF 240 (666)
Q Consensus 224 a~~~~~~~~~~~~~--~~~ 240 (666)
+.+.+++....... |+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 99999999987665 554
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.21 E-value=0.0018 Score=48.35 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=41.0
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGL-----CVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
+|+.-...+++.+.+.|++..|..+|+.+++... ..+....+..++.++.+.|+++.|...++++++..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4555566666777777777777777766665320 01234455666666666666666666666666543
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.19 E-value=0.0021 Score=47.97 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=59.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG------WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHV 137 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 137 (666)
-+...+..++..+.+.|++..|..+|+.+.+.. ..+...++..+..++.+.|+++.|...++++.+..|.++.+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 356778889999999999999999999987752 11245567778888888888888888888888888777655
Q ss_pred HH
Q 038606 138 FS 139 (666)
Q Consensus 138 ~~ 139 (666)
..
T Consensus 83 ~~ 84 (104)
T 2v5f_A 83 NG 84 (104)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.15 E-value=0.0012 Score=58.34 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHcCCC--CchHHHHHHHHHHh-----cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc-cCCHHH
Q 038606 117 FDKALSVFNEIIDHGWV--DEHVFSILLVAFSK-----WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK-KSRVDK 188 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 188 (666)
...|...++++.+.+|. +..+|..++..|.. -|+.++|.+.|++.++.++.-+..++......++. .|+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46888889999999886 56799999999999 49999999999999998654347777788888887 499999
Q ss_pred HHHHHHHHHhCCCC--ccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 189 ALQLFDKMTKSGFA--SDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 189 A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
+.+.+++....... |+....+.+ .-.+|..++.++
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 99999999987544 444443332 234555555544
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0037 Score=49.29 Aligned_cols=87 Identities=8% Similarity=-0.030 Sum_probs=72.1
Q ss_pred hhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccC---ChHHHHHHHHHHHHcCCCCC--ChhhHHHHHHHHHhcCChh
Q 038606 9 RRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVG---LVEEANMLFDQVKREGLCVP--NNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 83 (666)
+....+++.++.....++ +++++...++-++.+.+ +.+++..+|+.+.+.+ .| +...+..+.-++.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHH
Confidence 455667777877766554 69999999999999988 6679999999999976 34 4677888899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 038606 84 LVEMRLKEMQDYGWG 98 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~ 98 (666)
+|+++++.+++..|.
T Consensus 89 ~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999996543
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.00097 Score=64.53 Aligned_cols=85 Identities=6% Similarity=-0.162 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHHcC--CC-CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-CcccHHHHHHHH
Q 038606 45 LVEEANMLFDQVKREG--LC-VPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDY-----GWG-Y-DKYTLTPLLQVY 111 (666)
Q Consensus 45 ~~~~A~~~~~~~~~~~--~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~ 111 (666)
++++|+.+++++++.. .+ +.+ ..+++.|+.+|...|++++|..+++++++. |.. | -..+++.|...|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 5777788777766531 11 222 356778888888888888888888887652 222 1 234577788888
Q ss_pred HhcCChhHHHHHHHHHHH
Q 038606 112 CNSGQFDKALSVFNEIID 129 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~ 129 (666)
...|++++|+.+++++..
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 888888888888888765
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.98 E-value=0.014 Score=45.22 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=63.2
Q ss_pred CCChhhHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCCc-ccHHHHHHH------HHhcCChhHHHHHHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSV------DLVEMRLKEMQDYGWGYDK-YTLTPLLQV------YCNSGQFDKALSVFNEIID 129 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~A~~~~~~~~~ 129 (666)
|.|..+|...+...-+.|++ +..+++|+++... .+|+. ..|...+.. +...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56677777777777777777 7777777777665 33331 122222211 1233677777777777765
Q ss_pred cCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 038606 130 HGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL 168 (666)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (666)
.+..-..+|...+..-.++|++..|.+++.+.+..++.|
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 433234556666666667777777777777777765443
No 226
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0017 Score=62.82 Aligned_cols=87 Identities=9% Similarity=-0.092 Sum_probs=70.1
Q ss_pred hcCChhHHHHHHHHHHhc-----CCC-C-CcccHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCch---HHHHHH
Q 038606 78 KSCSVDLVEMRLKEMQDY-----GWG-Y-DKYTLTPLLQVYCNSGQFDKALSVFNEIID-----HGWVDEH---VFSILL 142 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~---~~~~l~ 142 (666)
..|++++|..++++.++. |+. | -..+++.+..+|...|++++|+.++++++. .|+..+. .++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999998763 222 1 235678899999999999999999999875 3555554 588899
Q ss_pred HHHHhcCChhhHHHHHHHHhhC
Q 038606 143 VAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.+|...|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0036 Score=60.74 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=50.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHcC--CCCC-C---hhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCC-C-Cccc
Q 038606 37 IRCLGSVGLVEEANMLFDQVKREG--LCVP-N---NYSYNCLLEALCKSCSVDLVEMRLKEMQDY-----GWG-Y-DKYT 103 (666)
Q Consensus 37 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~ 103 (666)
+..+.++|++++|+.+++++++.. .+.| + ..+++.++.+|...|++++|..+++++++. |.. | -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334445667777777777766431 1111 1 235666666676777777777776666542 111 1 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 104 LTPLLQVYCNSGQFDKALSVFNEII 128 (666)
Q Consensus 104 ~~~l~~~~~~~~~~~~A~~~~~~~~ 128 (666)
++.|...|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555566666666666666666554
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.81 E-value=0.021 Score=44.28 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=85.4
Q ss_pred CCCcchHHHHHHHHhccCCh------HHHHHHHHHHHHcCCCCCChh-hHHHHHH------HHHhcCChhHHHHHHHHHH
Q 038606 27 FMSPGALGFLIRCLGSVGLV------EEANMLFDQVKREGLCVPNNY-SYNCLLE------ALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 93 (666)
|.+++.+...++.+-+.|+. ++.++.|+++...- ||+.. .|..-+. .+...+++++|+++|+.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55888888899999988999 89999999998875 56531 2222111 2235589999999999998
Q ss_pred hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 94 DYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
+.+-. =..+|....+.-.++|++..|++++.+....++.+...+...+.
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 76333 36777777788889999999999999999988766555444433
No 229
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.76 E-value=0.0019 Score=62.58 Aligned_cols=89 Identities=11% Similarity=0.000 Sum_probs=70.0
Q ss_pred hHhhhhchHHHHHHHHhhhh-------cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCCChhhHHHH
Q 038606 6 SRARRIAPLRVLAQDVVKSR-------CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKRE-----GL-CVPNNYSYNCL 72 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~~~~~~l 72 (666)
.+.|++++|+.+++..+... .|....+++.++..|..+|+|++|+.+++++++. +. .|....+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 45688999999998887652 2223456788999999999999999999988754 21 11223478899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 038606 73 LEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 73 ~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
+..|...|++++|..+|+++++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.60 E-value=0.011 Score=44.68 Aligned_cols=87 Identities=14% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHH
Q 038606 47 EEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDL---VEMRLKEMQDYGWG-YDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
..+.+.|......+ +++..+...++.++.++.+... ++.+++.+.+.+.+ ........+.-++.+.|+|++|++
T Consensus 18 ~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444433 3555555555555555554443 55555555443211 122223334444555555555555
Q ss_pred HHHHHHHcCCCCc
Q 038606 123 VFNEIIDHGWVDE 135 (666)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (666)
.++.+++..|.+.
T Consensus 96 ~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 96 YVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 5555555555443
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.35 E-value=0.17 Score=54.36 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=10.9
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 206 AMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
..|..+...+.+.|+++.|.++|..+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33444444444444444444444433
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.33 Score=39.41 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=30.0
Q ss_pred hhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 180 FVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
....|+++.|.++.+.+ .+...|..|.......|+++-|.++|....
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34567777777666554 245567777777777777777777666653
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.14 Score=41.47 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=48.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHH
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACE 156 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (666)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++-..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 4555666665555544 1444555555555555666555555544322 3444444555555555444
Q ss_pred HHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHH
Q 038606 157 LIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDK 195 (666)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (666)
+-+.....+ -++.....+...|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444443332 122333333445555555555543
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.07 E-value=1.9 Score=45.64 Aligned_cols=259 Identities=12% Similarity=0.066 Sum_probs=137.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--C---
Q 038606 282 ILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGC--M--- 356 (666)
Q Consensus 282 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~--- 356 (666)
+.+..|+.++++.++......... -.+....-..+.-+....|..+++.+++.......- .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s--------------~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~ 448 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRA--------------SSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDE 448 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCC--------------SCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCH
T ss_pred hhhccCchHHHHHHHHHhccccCC--------------CcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccc
Confidence 355677777787777665431100 012223333344455666666677777776654321 0
Q ss_pred --CCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 038606 357 --QNVFLYNNLIDGLCNSNR-LEESYELLREMEESGFKPTHFT----LNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWV 429 (666)
Q Consensus 357 --~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 429 (666)
+....-..+.-+.+-.|. -+++.+.+..+.... +..+ -..+...+...|+-+....++..+.+.. ..+.
T Consensus 449 ~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~v 524 (963)
T 4ady_A 449 DVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNI 524 (963)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHH
Confidence 111112222223333332 245566666665432 2211 1233344556778777777777766532 1122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-H---HHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHH
Q 038606 430 KHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVC-Y---SAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNII 505 (666)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (666)
.-...+.-++...|+.+.+..+++.+... .++.. | ..+.-+|+..|+.....+++..+... ...++.....+
T Consensus 525 rR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAVi 600 (963)
T 4ady_A 525 TRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVI 600 (963)
T ss_dssp HHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHH
Confidence 22223333444678888888888887764 23322 2 23445677888988877788888764 23344333333
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHhc
Q 038606 506 ISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNI-DQAMLCLSRMLEK 563 (666)
Q Consensus 506 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 563 (666)
.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .++...+..+...
T Consensus 601 aLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D 658 (963)
T 4ady_A 601 ALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD 658 (963)
T ss_dssp HHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC
T ss_pred HHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC
Confidence 334445666666777776666542 44444444444444445554 5788888888653
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.02 E-value=0.34 Score=36.71 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=98.0
Q ss_pred HccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038606 475 IDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAM 554 (666)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 554 (666)
.-.|.+++..++..+.... .+..-+|.++.-....-+-+-..++++.+-+. .| ...+|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 3457788888888877764 24555666665555555555555555544332 12 13466666666
Q ss_pred HHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 555 LCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
..+-.+ ..+.......++.....|..+.-.+++..+... .+|++..+..+..+|.+.|+..+|.+++.++-+.
T Consensus 82 ~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 666554 234455666778888899999999999986543 5788999999999999999999999999999999
Q ss_pred CCC
Q 038606 635 GMK 637 (666)
Q Consensus 635 ~~~ 637 (666)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 854
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.00 E-value=0.27 Score=52.75 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=13.3
Q ss_pred hhhHHHHHHhhhccCCHHHHHHHHHHH
Q 038606 170 EKTFCVLIHGFVKKSRVDKALQLFDKM 196 (666)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (666)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555555555555555555443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.59 E-value=0.07 Score=40.37 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=6.6
Q ss_pred hccCCHHHHHHHHHHHH
Q 038606 181 VKKSRVDKALQLFDKMT 197 (666)
Q Consensus 181 ~~~~~~~~A~~~~~~~~ 197 (666)
.+.|++++|++.++.+.
T Consensus 85 yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 33333333333333333
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.06 E-value=0.81 Score=34.73 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=95.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHH
Q 038606 439 LCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEA 518 (666)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 518 (666)
..-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+. + |. ...|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHH
Confidence 34568888888888888775 35555666665555555666666666665543 1 11 224455444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 519 EDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
...+-.+- .+.......++.....|+-++-.+++..+.... +|++.....+..+|.+.|+..+|.+++.++-+
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44443331 244556666778888999999889988865543 47888888899999999999999999999998
Q ss_pred cCCC
Q 038606 599 KGCA 602 (666)
Q Consensus 599 ~~~~ 602 (666)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8864
No 239
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.70 E-value=0.26 Score=39.20 Aligned_cols=138 Identities=10% Similarity=-0.026 Sum_probs=79.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN-------YSYNCLLEALCKSCSVDLVEMRLKEMQDYG--WGY 99 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 99 (666)
+-..+..-++.+...|.++.|+-+.+-+......+|+. .++..++.++...|+|..|...|+++++.. ...
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 55667778888888999999988887755432112331 356778888999999999999999975531 111
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHh
Q 038606 100 DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHG 179 (666)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (666)
+..+...+. ........ ...+.+.++-..+..++.+.|+.++|+.+++.+..+. .+..+-..|.+.
T Consensus 99 ~~s~~~~~~----~~ss~p~s--------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakL 164 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQS--------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANL 164 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHH
T ss_pred CCCcccccc----ccCCCccc--------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHH
Confidence 111111110 00000000 0011233566778889999999999999998876552 344444444444
Q ss_pred h
Q 038606 180 F 180 (666)
Q Consensus 180 ~ 180 (666)
|
T Consensus 165 y 165 (167)
T 3ffl_A 165 Y 165 (167)
T ss_dssp C
T ss_pred h
Confidence 3
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.19 Score=51.80 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=27.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038606 580 LCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMM 631 (666)
Q Consensus 580 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 631 (666)
+...|+++.|+++.++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455555555555555553 1223555555555555555555555555443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.03 E-value=0.62 Score=37.08 Aligned_cols=134 Identities=6% Similarity=-0.027 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCc-------ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCc
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYG-WGYDK-------YTLTPLLQVYCNSGQFDKALSVFNEIIDHGW---VDE 135 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 135 (666)
-++..-+..+...|.++.|+-+...++... ..++. .++..+..++...|+|..|...|++++.... .++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666778889999999998888765431 12221 2456677888899999999999998754321 111
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 038606 136 HVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGL 215 (666)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (666)
.....+.. ...... ..+...+...--.+..+|.+.+++++|+.+++.+... ..+...--.|...|
T Consensus 101 s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHHC
T ss_pred Cccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHHh
Confidence 11111100 000000 0111234445556788899999999999999998765 34444444444433
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.58 E-value=0.64 Score=35.34 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=10.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWV 133 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~ 133 (666)
-++.+.|+++.|++..+.+++..|.
T Consensus 86 vg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3334444444444444444444433
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.35 E-value=7.7 Score=39.34 Aligned_cols=438 Identities=11% Similarity=-0.023 Sum_probs=209.7
Q ss_pred hHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHH
Q 038606 6 SRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLV 85 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (666)
.+.|++..+..+...+. +.|+.+.+=...++.-.......+...++.+.... |.........+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~--~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~---p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLK--DYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTL---PPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGT--TSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhc--CCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCC---hhHHHHHHHHHHHHHhCCCHHHH
Confidence 34456655555544332 33443332222222222233455444444433221 22333445556777788887776
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhh--HHHHHHHHhh
Q 038606 86 EMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDK--ACELIERMDD 163 (666)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~ 163 (666)
...+.. .+.+...-.....+....|+..+|......+-..+...+..+..++..+.+.|.... ..+-++.+..
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~ 166 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMK 166 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 664432 233555555667777788998888888777777777778888888888887775543 3333344444
Q ss_pred CCCCcchhhHHHHHHhhhc------------cCCHHHHHHHHHHHHhCCCCccHH---HHHHHHHhhhccCChhHHHHHH
Q 038606 164 CNIRLNEKTFCVLIHGFVK------------KSRVDKALQLFDKMTKSGFASDAA---MYDVIIGGLCKNKQLEMALQLY 228 (666)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~ 228 (666)
.+ +...-..++..+.. ..+...+...... . .++.. .+...+.-+.+ .+.+.|..++
T Consensus 167 ~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~---~--~~~~~~~~~~~~~~~rlar-~d~~~A~~~~ 237 (618)
T 1qsa_A 167 AG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART---T--GATDFTRQMAAVAFASVAR-QDAENARLMI 237 (618)
T ss_dssp TT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH---S--CCCHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred CC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc---c--CCChhhHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 32 12222222221100 0111111111111 0 12211 11112222333 4778898888
Q ss_pred HHHHhCC-CCCCHH--HHHHHHHhhhccC-cHH--HHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038606 229 SEMKGSG-ITPDFE--ILSKLITSCSDEG-ELT--LLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 229 ~~~~~~~-~~~~~~--~~~~ll~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 302 (666)
....... +.+... ....+.......+ +.+ ..+.... ....+.....-.++...+.|+++.|.+.|+.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI---MRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred HhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc---ccCCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 8876432 222221 1222222333334 333 2222211 11122222333444556778999999988887653
Q ss_pred CCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 038606 303 EPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELL 382 (666)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 382 (666)
. ........=+.+++...|+.++|..+|..+.. +. +|..++. ..+.|.....
T Consensus 315 ~-----------------~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lA-a~~Lg~~~~~---- 366 (618)
T 1qsa_A 315 A-----------------KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVA-AQRIGEEYEL---- 366 (618)
T ss_dssp G-----------------GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHH-HHHTTCCCCC----
T ss_pred c-----------------cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHH-HHHcCCCCCC----
Confidence 2 22333344566677788999999998888875 21 2332221 1222221000
Q ss_pred HHHHhCCCCC---CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 383 REMEESGFKP---THF---TLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMV 456 (666)
Q Consensus 383 ~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 456 (666)
....+.+ ... .....+..+...|....|...+..+.... +......+.......|..+.++.......
T Consensus 367 ---~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~a~~~~~~~~~v~~~~~~~ 440 (618)
T 1qsa_A 367 ---KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (618)
T ss_dssp ---CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ---CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0000001 010 11223455677888888888887776532 22333344555566777777665554332
Q ss_pred HcCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccH
Q 038606 457 QEGFL--PDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDV 499 (666)
Q Consensus 457 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 499 (666)
..+.. .-+..|...+....+...++..+-.--...+.++.|+.
T Consensus 441 ~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 441 LWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp CTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred hhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 22100 00123555566566555555443322222333444443
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.34 E-value=1.7 Score=33.58 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=35.8
Q ss_pred CChhhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038606 64 PNNYSYNCLLEALCKSCSVD---LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD 134 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 134 (666)
|+..+......++.++.+.+ +++.+++.+.+.++......+.-+.-++.+.|++++|++..+.+++..|.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45555555555555555332 455555555554332222333334445555555555555555555555544
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.27 E-value=0.74 Score=34.98 Aligned_cols=72 Identities=7% Similarity=-0.111 Sum_probs=58.2
Q ss_pred hcCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038606 25 RCFMSPGALGFLIRCLGSVGLV---EEANMLFDQVKREGLCVP-NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG 98 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 98 (666)
++.+|+.+-..++-++.+..+. ..++.+++.+.+.+ |. ...-+.-|.-++.+.|++++|++..+.+++..|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 6777999988888888887654 57899999999876 32 3556777888999999999999999999986443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.64 Score=48.01 Aligned_cols=127 Identities=9% Similarity=0.093 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCchHHH-HHHHHHHhcC-ChhhHHHHHHHHhhC------CCC-cch----
Q 038606 105 TPLLQVYCNSGQ-FDKALSVFNEIIDHGWVDEHVFS-ILLVAFSKWG-EVDKACELIERMDDC------NIR-LNE---- 170 (666)
Q Consensus 105 ~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~-~~~---- 170 (666)
.+++..+...++ ++.|+.+|+++...+|.....+. .++......+ +--+|.+++.+.++. ..+ .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 47899999999888664433332 2222322222 233455555544321 011 111
Q ss_pred ------hhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 171 ------KTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 171 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
.....=.+.+...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222345667899999999999988764 6678899999999999999999999988874
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.35 E-value=8.5 Score=37.30 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=66.5
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhC--CCCcc---HHHHHHHHHhhhccCChhHHHHHHHHHHhC--CCCCCHHHHHH
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKS--GFASD---AAMYDVIIGGLCKNKQLEMALQLYSEMKGS--GITPDFEILSK 245 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ 245 (666)
...|...|...|++.+|.+++..+... +..+. ...+...++.|...+++..|..+++++... ...+.+...
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk-- 217 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK-- 217 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH--
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH--
Confidence 345778888899999999999987642 21111 345666788899999999999999887431 111111000
Q ss_pred HHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 246 LITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
...+...+..+...+++.+|.+.|..+..
T Consensus 218 ---------------------------~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 ---------------------------LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ---------------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 03345566777788888888888777654
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.16 E-value=2.4 Score=47.13 Aligned_cols=146 Identities=11% Similarity=-0.056 Sum_probs=97.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------------
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY------------ 99 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------ 99 (666)
....++..+.+.+.++.|.++... . +.++.....++.++...|++++|...|+++-. ++..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~-~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~ 886 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGW-L-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQ 886 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHH-S-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhh-c-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccc
Confidence 445677778888888777664432 2 34556667788899999999999999977632 1110
Q ss_pred -----------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCc----hHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 100 -----------DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW-VDE----HVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 100 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
-+.-|..++..+.+.|.++.+++.-..+.+... .++ ..|..+...+...|++++|-..+-.+..
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 012245566777778888888887776665433 222 2567778888888888888888877776
Q ss_pred CCCCcchhhHHHHHHhhhccCCH
Q 038606 164 CNIRLNEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~ 186 (666)
... -...+..|+..++..|+.
T Consensus 967 ~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 967 TPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHH--HHHHHHHHHHHHHhCCCh
Confidence 533 345566666666655544
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.74 E-value=2.2 Score=32.94 Aligned_cols=72 Identities=7% Similarity=-0.111 Sum_probs=57.2
Q ss_pred hcCCCcchHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038606 25 RCFMSPGALGFLIRCLGSVGLV---EEANMLFDQVKREGLCVP-NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG 98 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 98 (666)
+..+|+.+-..++-++.+..+. .+++.+++.+.+.+ |. ...-...|.-++.+.|++++|+++.+.+++..|.
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3467888888888888887765 47888999999876 32 3445666778899999999999999999996543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.37 E-value=0.89 Score=43.30 Aligned_cols=55 Identities=9% Similarity=-0.075 Sum_probs=32.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
++..+...|++++|...+..+...+ |-+...|..++.++.+.|+..+|...|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555566666666666655555 445556666666666666666666666554
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.29 E-value=0.92 Score=43.19 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=54.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 038606 537 YNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEE-----KGCAPNRITFM 609 (666)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 609 (666)
...++.++...|+++++...+..+....| .+...|..++.++...|+..+|++.|+++.+ .|+.|++.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34456677778888888888888877766 6777888888888888888888888887654 48888776643
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.95 E-value=7.2 Score=36.80 Aligned_cols=26 Identities=4% Similarity=-0.207 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHH
Q 038606 465 VCYSAAIGGLIDIKRVDLALELFRDI 490 (666)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 490 (666)
.....+...|.+.|+.++..+++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555666666666666555544
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.82 E-value=1.6 Score=31.09 Aligned_cols=75 Identities=7% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 69 YNCLLEALCKSCS--VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 69 ~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
+..--..+...-+ .=+.++.++.+...+.-|++.+..+.++++.+.+++.-|+++|+.+...-.....+|..++.
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3333334443333 33677777777777777888888888888888888888888888887654333455665554
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.81 E-value=6.9 Score=34.18 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=72.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQF 117 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (666)
..+.+.|+.++|+.....-++.. |.|......+.+.++-.|+++.|.+-++.+.+.++. .. .....|. +.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~--~~---~~a~~yr---~l 74 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--YL---PGASQLR---HL 74 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG--GH---HHHHHHH---HH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch--hh---HHHHHHH---HH
Confidence 45677889999999998888887 788888888999999999999999999988886433 11 1111221 11
Q ss_pred hHHHHHHHHHHHcCC-----CCchHHHH-HHH--HHHhcCChhhHHHHHHHHhhC
Q 038606 118 DKALSVFNEIIDHGW-----VDEHVFSI-LLV--AFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 118 ~~A~~~~~~~~~~~~-----~~~~~~~~-l~~--~~~~~g~~~~A~~~~~~~~~~ 164 (666)
=.|...=.++...+. ..+..|.. ++. .....|+.++|.++-.++.+.
T Consensus 75 I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 75 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 122222223333221 22333333 333 333458888888777777553
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.17 E-value=21 Score=36.25 Aligned_cols=116 Identities=8% Similarity=-0.016 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 038606 373 NRLEESYELLREMEESGFKPTHFTLNSMFR----CLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEA 448 (666)
Q Consensus 373 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 448 (666)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47789999998886543 334433333322 2333443556666666655432 3333344444555677999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 038606 449 FRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICA 492 (666)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 492 (666)
...|..|..... ......--+..++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999988766421 1233344455677788999999999998865
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.84 E-value=18 Score=35.07 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=35.4
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 337 DGKLDLALSLFREMTQI-----GCMQNVFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 337 ~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36788888777665432 2344566777788888888888888777766643
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.76 E-value=5.9 Score=28.27 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 514 RVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
+.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+.+..+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~ 76 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4445555555555555666666666666666666666666666666665544
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.79 E-value=18 Score=32.94 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=87.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHH----HHHhhCCCCcchhhHHHHHHhhh
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELI----ERMDDCNIRLNEKTFCVLIHGFV 181 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 181 (666)
++..-|.+.+++++|++++..-. ..+.+.|+...|.++. +-..+.+++++......++..+.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445667777777777654322 1233334444433332 33334455556666566665555
Q ss_pred ccCCHH-HHHHHHHHHH----hC--CCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccC
Q 038606 182 KKSRVD-KALQLFDKMT----KS--GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEG 254 (666)
Q Consensus 182 ~~~~~~-~A~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 254 (666)
....-+ .=..+.+.+. +. ...-|+.....+...|.+.+++.+|..-|- .|-.++..++..++-.+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence 443211 1112222221 11 123466677788888999999988887772 233444456655555544332
Q ss_pred cHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 255 ELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
... +. .......+-.|...+++..|..+++...+
T Consensus 182 ~~~------------e~-dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESH------------TA-PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGG------------GH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc------------cH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 00 12233344557778899999888776654
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.57 E-value=6.4 Score=43.81 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=100.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC----C---------------
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC----N--------------- 165 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--------------- 165 (666)
..++..+.+.+.++-+.++... -+.++.....++.++...|++++|.+.|.+.... +
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHhhh----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455556666777666554322 2335555566677777777777777777665311 0
Q ss_pred ---CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCC
Q 038606 166 ---IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD----AAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITP 238 (666)
Q Consensus 166 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (666)
...-..-|..++..+.+.|.++.+.++-....+...+.+ ...|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 000113467788888889999999888777665321222 22688889999999999999999988876543
Q ss_pred CHHHHHHHHHhhhccCcHHHHHH
Q 038606 239 DFEILSKLITSCSDEGELTLLVK 261 (666)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~~~~ 261 (666)
-...+..++...+..+.....+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhC
Confidence 45668888888888887775553
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.86 E-value=12 Score=28.37 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 514 RVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
+.-+..+-++.+....+.|++.+..+.+.+|-+.+|+..|..+|+.+..+..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~ 119 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 119 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 4445566666666666777777777777777777777777777777766654
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.74 E-value=8 Score=29.35 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038606 588 DAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALIS 648 (666)
Q Consensus 588 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 648 (666)
+..+-++.+...++.|++.+....+++|.+.+++..|+.+++-.+.+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 345555566666677777777777788877788888888777776542 333445555544
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.60 E-value=9.5 Score=36.79 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchHHHHHHHHHHhcCChhhHHHHHHHHhh---CCCCcchhh--HH
Q 038606 103 TLTPLLQVYCNSGQFDKALSVFNEIIDHGWV---DEHVFSILLVAFSKWGEVDKACELIERMDD---CNIRLNEKT--FC 174 (666)
Q Consensus 103 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~--~~ 174 (666)
+...+...|.+.|+++.|.+.|.++...-.. -...+...+..+...+++..+...+.++.. .+..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4555666666666666666666666543221 123455566666666666666666666532 121222111 11
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHh
Q 038606 175 VLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
.-...+...+++..|-..|-....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112233456677777666655443
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.34 E-value=32 Score=30.12 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=72.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--chhhHHHHHHhhhccCCHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL--NEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 187 (666)
...+.|++++|++....-.+.+|.|......+...++-.|+++.|.+-++...+.++.. ....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH--------
Confidence 34577888888888888888888888888888888888899999988888887764221 12233333332
Q ss_pred HHHHHHHHHHhCCCCc-----cHHHHHHHHHhhh--ccCChhHHHHHHHHHHh
Q 038606 188 KALQLFDKMTKSGFAS-----DAAMYDVIIGGLC--KNKQLEMALQLYSEMKG 233 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 233 (666)
+..=..+...+-.| ...-...++.+.. ..|+.++|..+-.++.+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 22222222221111 1122333444433 46999999998888865
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.14 E-value=31 Score=28.87 Aligned_cols=154 Identities=14% Similarity=0.011 Sum_probs=75.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
++.......+..+.+.|.. .+...+..+... ++..+-...+.++...++.+ +...+..+... .++.+-...+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~--~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALKD--EDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC--SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC--CCHHHHHHHHH
Confidence 4555555555556555553 333333334332 34445555555555555533 23333333322 24455555555
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhH
Q 038606 144 AFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEM 223 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (666)
++...|+.+ +...+..+.. .++..+-...+.++.+.|..+ +...+..+.+ .++...-...+.++.+.+. ..
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 666666543 3444444443 235555555555665555543 4444444443 3455555555666666555 34
Q ss_pred HHHHHHHHHh
Q 038606 224 ALQLYSEMKG 233 (666)
Q Consensus 224 a~~~~~~~~~ 233 (666)
+...+..+..
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.58 E-value=26 Score=33.68 Aligned_cols=62 Identities=6% Similarity=-0.119 Sum_probs=36.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038606 466 CYSAAIGGLIDIKRVDLALELFRDICAH--GCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMIT 527 (666)
Q Consensus 466 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 527 (666)
+...+...|.+.|+++.|.+.|.++... +...-...+-..+..+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555666666777777777777666542 1222334455555666666666666666666543
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.64 E-value=39 Score=28.26 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=94.8
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
++.+-...+..+...|.. .+...+..++. .++.......+.++.+.|+.+ +...+..++. .++..+-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 566666677777777763 44555555554 357777777888888888754 4455555544 25666777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDK 188 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (666)
.++.+.|+.+ +...+..+... .++.+....+.++...|+. ++...+..+.. .++..+-...+.++.+.+. .+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALKD--EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHhCcHH-HHHHHHHHHhC--CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 8888888754 44444444432 3566666777777777764 45555555554 3456666666777776665 45
Q ss_pred HHHHHHHHHh
Q 038606 189 ALQLFDKMTK 198 (666)
Q Consensus 189 A~~~~~~~~~ 198 (666)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5556666554
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.11 E-value=39 Score=28.02 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=44.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038606 547 SGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN 604 (666)
Q Consensus 547 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 604 (666)
+++..++.++|..|...+...--...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446688888888887776566667777788888888888888888888887766663
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.37 E-value=68 Score=29.28 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHH
Q 038606 533 SVATYNLLINGWCKSGNIDQAMLCL 557 (666)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (666)
++.....+...|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555666667777777777777666
No 269
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=68.77 E-value=62 Score=28.58 Aligned_cols=186 Identities=12% Similarity=-0.061 Sum_probs=99.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh----HHHHHHHH-HHhcCCCCCccc
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD----LVEMRLKE-MQDYGWGYDKYT 103 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~-~~~~~~~~~~~~ 103 (666)
++.+-..-+.++...|. +.+...+..++. .++.......+.++.+.|... ....++.. +.. .++..+
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~v 107 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCS----DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACV 107 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHH
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHc----CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHH
Confidence 45555556666666665 456666666664 356667777777777777433 23334432 223 235555
Q ss_pred HHHHHHHHHhcCC-----hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHH
Q 038606 104 LTPLLQVYCNSGQ-----FDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIH 178 (666)
Q Consensus 104 ~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 178 (666)
-...+.++...+. ...+...+...... .++.+-...+.++...|+.+ +...+..+... ++..+-...+.
T Consensus 108 r~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~ 181 (280)
T 1oyz_A 108 RATAIESTAQRCKKNPIYSPKIVEQSQITAFD--KSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHH
Confidence 5555666555441 23444444444332 35666666677777777643 45555555542 34444444455
Q ss_pred hhhccC-CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 179 GFVKKS-RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 179 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
++...| ....+...+-.+.+ .++...-...+.++.+.|+......+...+
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l 232 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHh
Confidence 554444 23455555555554 355555566667777777655444444444
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.88 E-value=71 Score=28.89 Aligned_cols=26 Identities=8% Similarity=-0.121 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHH
Q 038606 533 SVATYNLLINGWCKSGNIDQAMLCLS 558 (666)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (666)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55666677777777788877777664
No 271
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.22 E-value=88 Score=30.63 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038606 69 YNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
++.+++.|...+.++.|.++..+.
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 444445555555555555555544
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.10 E-value=73 Score=28.79 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=17.1
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 038606 272 MTLLCNSIMRILVSNGSIDQAYNLL 296 (666)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~A~~~~ 296 (666)
++..+..+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3456667777777777777776655
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.11 E-value=61 Score=26.85 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCC
Q 038606 512 AQRVAEAEDLFNEMITKGLIPS-VATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSP 568 (666)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (666)
.+...++..+|..|...|+--. ...|......+...|++.+|.++|+.-++..- .|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A-~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC-RP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cc
Confidence 3446788888888888766543 34667777777888888888888888877655 44
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.35 E-value=43 Score=23.84 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=28.9
Q ss_pred hhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 180 FVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
+...|++++|..+.+... .||...|..|.. .+.|-.+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445666666666555544 566666655433 35566666666665665544
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.95 E-value=44 Score=23.80 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHH
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFD 194 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (666)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|-+|.. .+.|-.+++...+.
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345666666666555543 22233333445666777777776654443 466666666654 36677777777776
Q ss_pred HHHhCCCCccHHHH
Q 038606 195 KMTKSGFASDAAMY 208 (666)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (666)
++...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 776665 4444443
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.47 E-value=1.2e+02 Score=28.60 Aligned_cols=168 Identities=8% Similarity=-0.050 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC---CCchh
Q 038606 359 VFLYNNLIDGLCNSNRLEESYELLREMEES-GFKP---THFTLNSMFRCLCRR-QDVVGALNLVRKMRVQGH---EPWVK 430 (666)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~~~~ 430 (666)
......|...|.+.|+.++..+++...... +..+ .......++..+... +..+.-.++..+..+... .....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999988888776432 1111 123355666666553 333444444444433210 11111
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHhc--CCCccHHH
Q 038606 431 --HNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPD-----IVCYSAAIGGLIDIKRVDLALELFRDICAH--GCCPDVVA 501 (666)
Q Consensus 431 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 501 (666)
.-..++..|...|++.+|..++..+.+.=-..| ...+..-+..|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 112466777777777777777777765311111 122333445566677777777777665421 12233322
Q ss_pred HHHH----HHHHH-ccCCHHHHHHHHHHHH
Q 038606 502 YNII----ISGLC-KAQRVAEAEDLFNEMI 526 (666)
Q Consensus 502 ~~~l----~~~~~-~~~~~~~a~~~~~~~~ 526 (666)
...+ .-.+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2111 12233 5667777666655543
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.30 E-value=46 Score=23.77 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=29.1
Q ss_pred hhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 180 FVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
+...|++++|..+.+... .||...|..|.. .+.|-.+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445666766666665544 566666655433 25566666666665665544
No 278
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=59.19 E-value=71 Score=27.72 Aligned_cols=63 Identities=10% Similarity=-0.079 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK-SCSVDLVEMRLKEM 92 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 92 (666)
+.+-+..+++..-+.+++++..+....+.+.+. ..+.+-.+.|-.+|-. -|....++.++..+
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~-eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDV-ELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC-cCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 345566777777778888888888877777654 4566666666555532 23334455554444
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.73 E-value=47 Score=23.71 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHH
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFD 194 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (666)
...++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|-+|.. .+.|-.+++...+.
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345666666666555543 22233333445666777777777665543 466666666654 36677777777776
Q ss_pred HHHhCCCCccHHHH
Q 038606 195 KMTKSGFASDAAMY 208 (666)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (666)
++...| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 666655 4444433
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.94 E-value=72 Score=25.03 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038606 588 DAIMLWNEMEEKGCAPN-RITFMALITGLCKCDRPRAALVHFRMMKEKGMKPD 639 (666)
Q Consensus 588 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 639 (666)
++.++|..|...|+-.. ...|......+...|++++|..+|+.-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 35566666655544333 44455555555556666666666666655554553
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=55.68 E-value=78 Score=25.32 Aligned_cols=98 Identities=11% Similarity=0.174 Sum_probs=60.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHhhhccCcHHHH
Q 038606 182 KKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT--PDFEILSKLITSCSDEGELTLL 259 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~ 259 (666)
-+|.+.+++-.+...- ..+..-|..+ +|-+..++..|+..++.+....+. ||... .+-..+.
T Consensus 45 yngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~--~~~~ffv-------- 108 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDA--RIQEMFV-------- 108 (242)
T ss_dssp HTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--HHHTTSC--------
T ss_pred hcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCccccc--ccceeee--------
Confidence 4677777776654422 2333344433 466778888888888888864443 33211 0000111
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 260 VKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
+.......++.+...+.+.|+.++|+..+..--...
T Consensus 109 --------d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 109 --------DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 122233667788889999999999999998766543
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.34 E-value=35 Score=27.24 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 038606 553 AMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAP 603 (666)
Q Consensus 553 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 603 (666)
+.++|..|...+...--...|......+...|++.+|.++|+..++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334444444444333334444444444444455555555555544444343
No 283
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=51.79 E-value=96 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=17.4
Q ss_pred hhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHH
Q 038606 22 VKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVK 57 (666)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 57 (666)
.+.|.|...+.|..-...+..+|+|++|.++-....
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 333444444445445555555555555555444433
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.18 E-value=94 Score=24.38 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038606 551 DQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN 604 (666)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 604 (666)
+++.++|..|...+...--...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 447788888877776566667777778888888888888888888887766664
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.12 E-value=85 Score=30.74 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCc---hHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDHG--WVDE---HVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
...++.+++.|...+.++.|..+..+..-.. ..+. .-+..++..+.-.+++.+|.+.|..+...-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4567888899999999999999998874221 1122 124567888889999999999999988753
No 286
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=47.42 E-value=1.2e+02 Score=26.07 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=19.2
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHH
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCL 40 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 40 (666)
|+|...++|+++.......+...+..+|.+--+.+..+|
T Consensus 11 AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 11 ARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 444455555555555555544444445544444444444
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.80 E-value=1.7e+02 Score=27.10 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 276 CNSIMRILVSNGSIDQAYNLLQAMI 300 (666)
Q Consensus 276 ~~~l~~~~~~~~~~~~A~~~~~~~~ 300 (666)
...++.-|...|+.++|.+.++.+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc
Confidence 3556666777777777777777765
No 288
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=45.54 E-value=1.5e+02 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=19.9
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhh--cCCCcchHHHHHHHHh
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSR--CFMSPGALGFLIRCLG 41 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 41 (666)
|+|...++|+++.......+...+ ..+|.+--+.+..+|-
T Consensus 15 AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYK 56 (260)
T 1o9d_A 15 AKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYK 56 (260)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence 445555555555555555555444 4445555444444443
No 289
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=45.35 E-value=1.5e+02 Score=25.76 Aligned_cols=63 Identities=10% Similarity=-0.079 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCCChhhHHHHHHHHHh-cCChhHHHHHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREG---LCVPNNYSYNCLLEALCK-SCSVDLVEMRLKEM 92 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 92 (666)
+.+.+..+++..-+.+++++..+...++.+.+ . ..+.+-.+.|..+|-. -|....++.+...+
T Consensus 27 ~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~-eLt~EERnLLSvAyKNvIg~rR~swRiissi 93 (260)
T 2npm_A 27 ARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESE-ELTVEERNLLSVAYKNAVGSRRSSWRIISSV 93 (260)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34556677888888888888888888888764 3 4566666666655532 23334444554444
No 290
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.02 E-value=99 Score=23.98 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=36.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 595 EMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNP 656 (666)
Q Consensus 595 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 656 (666)
.+.+.|+++++.=. .++..+...+..-.|.++++.+.+.+...+..|.+..++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 35556666554332 33444444555666777777777665455666666666677766643
No 291
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.74 E-value=53 Score=27.77 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038606 553 AMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK 599 (666)
Q Consensus 553 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (666)
+..+|..|...+...--...|......+...|++.+|.++|+.-++.
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444433332333333444444444444444444444444443
No 292
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.25 E-value=98 Score=25.43 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=20.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCh
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEV 151 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (666)
+..|.+.|.+++|.++|+++...++.+...-..|+..-.+..-+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 44556666666666666665555443333344444443333333
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.04 E-value=1.3e+02 Score=25.41 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038606 586 PDDAIMLWNEMEEKGCAPN-RITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDM 640 (666)
Q Consensus 586 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 640 (666)
.+.+.++|..|...|+--. ...|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3688899999999877654 667788888888999999999999999988777754
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.93 E-value=99 Score=23.62 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 596 MEEKGCAPNRITFMALITGLCKCD-RPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNP 656 (666)
Q Consensus 596 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 656 (666)
+.+.|+++++.=. .++..+...+ ..-.|.++++.+.+.+...+..|.+.-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4556666654432 3444455554 5666777777777765455666666666677666643
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.94 E-value=2.3e+02 Score=27.26 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038606 337 DGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNL 416 (666)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (666)
..+.+-|.++- .+.|++.-...|..-.+.+...|++++|-++--...+ |+-.+..|.+.+-..-...|+..--+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 35566555443 4456666666777777888889999999887766543 3445666665554444445555556666
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 038606 417 VRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRF 451 (666)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 451 (666)
|..+.+.| ..+..---.+++.-...|+.+-..++
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 76666665 23332223344444445554443333
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.37 E-value=1.1e+02 Score=25.51 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHcCCCCchHH--------HHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 117 FDKALSVFNEIIDHGWVDEHVF--------SILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
++.|+.+|+.+.+..+.+.... ......|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4567777777766544332211 12233555666666666666666554
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.39 E-value=1.1e+02 Score=26.14 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=42.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 038606 505 IISGLCKAQRVAEAEDLFNEMITK--GLIP----SVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLID 578 (666)
Q Consensus 505 l~~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (666)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+.+. . .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHH
Confidence 356666677777777777766543 2221 11111222222222222222333333332 2 234444455556
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 038606 579 GLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 579 ~~~~~g~~~~A~~~~~~~~~ 598 (666)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 66666666666666665554
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.10 E-value=1.1e+02 Score=23.92 Aligned_cols=61 Identities=7% Similarity=0.070 Sum_probs=35.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 595 EMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNP 656 (666)
Q Consensus 595 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 656 (666)
.+.+.|+++++.= ..++..+...+..-.|.++++.+.+.+...+..|.+..++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3555666654332 234445555556667777777777665455666666667777766643
No 299
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=40.69 E-value=1.3e+02 Score=29.49 Aligned_cols=49 Identities=10% Similarity=-0.045 Sum_probs=22.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
...++.|..+|..+.... |.+...|+.|+-.....|+.-.|.-.|-+.+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~--P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 333444444444444443 3444444444444444444444444444443
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.88 E-value=1.1e+02 Score=24.01 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=37.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 595 EMEEKGCAPNRITFMALITGLCKCD-RPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNP 656 (666)
Q Consensus 595 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 656 (666)
.+.+.|+++++.=. .++..+...+ ..-.|.++++.+.+.+...+..|.+.-++.+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45556666664432 3444444444 5666778887777765455666666667777766643
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.77 E-value=1.4e+02 Score=23.69 Aligned_cols=60 Identities=3% Similarity=-0.025 Sum_probs=43.7
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhCCCCc--cHHHHHHHHH-h-----hhccCChhHHHHHHHHHHh
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKSGFAS--DAAMYDVIIG-G-----LCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 233 (666)
+...+..| ..|++-+|-++|+.+-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444 4599999999999987765445 5567777777 2 3468999999999998865
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.33 E-value=71 Score=26.64 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhcCCCCCcc-------cHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 82 VDLVEMRLKEMQDYGWGYDKY-------TLTPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
.+.|..+++.+.+.-.-++.. .--..+..|.+.|.+++|.+++++....++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 567889998887753221111 111345677889999999999999887654
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.19 E-value=1.7e+02 Score=25.02 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=56.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhcCCCCC-----CHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038606 540 LINGWCKSGNIDQAMLCLSRMLEKESGSP-----DVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITG 614 (666)
Q Consensus 540 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 614 (666)
-++.+....++++|.+++++..+.-...+ ........+..-.....-.-+..+.+++ .. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 37788899999999999988765321111 1122223333333333334444555555 22 4556666777788
Q ss_pred HHccCChhHHHHHHHHHHH
Q 038606 615 LCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 615 ~~~~g~~~~A~~~~~~~~~ 633 (666)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8889999999999888764
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.16 E-value=96 Score=24.08 Aligned_cols=59 Identities=2% Similarity=-0.041 Sum_probs=32.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038606 595 EMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELN 655 (666)
Q Consensus 595 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 655 (666)
.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|.+.-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34455666554322 2333344444 55677777777665544566666666666666664
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.29 E-value=1.8e+02 Score=23.68 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=24.1
Q ss_pred chhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 169 NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
+..+-...+.++.+.++. .+...+..+.. .++...-...+.++...|. .++...+..+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 334444444444444442 23333333332 2344444444444444444 33444444444
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.35 E-value=3.5e+02 Score=29.27 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 186 (666)
++..+...|.++-|.++ ...-+.++..-..++.+|...|++++|.+.|+++.. ++..+...... .
T Consensus 816 l~~~L~~~~~~~~a~eL----~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~----------~ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV----------L 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------G
T ss_pred HHHHHHHhcHHHHHHHH----HhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------h
Confidence 34444455555544432 233333455556667777777777777777776542 11111100000 0
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHhhhc
Q 038606 187 DKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFE----ILSKLITSCSD 252 (666)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~ 252 (666)
.....++...... .....-|..++..+-+.+-++-+.++-+...+.-..-|.. .+..++++++.
T Consensus 881 ~~~~~ll~~~e~~--~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 881 REFQEIAEKYHHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHTTTC--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCccccc--chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 0111111111100 1223367778888888888888888777777542222332 45555555544
No 307
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.15 E-value=1.4e+02 Score=23.66 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC
Q 038606 596 MEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEK--GMKPDMFVFVALISAFLSELN 655 (666)
Q Consensus 596 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 655 (666)
+.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.+.-++.+...|-
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344566654432 23445555555566666666666655 434455555555666666654
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.75 E-value=2.8e+02 Score=25.07 Aligned_cols=49 Identities=8% Similarity=-0.113 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 587 DDAIMLWNEMEEKGCAPNR--ITFMALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 587 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
.+..++-.-+....+.|.. -++...+..+.+.+++..|..+.+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4444554455554555542 334455566667777777777777777654
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.74 E-value=93 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=10.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIID 129 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~ 129 (666)
++..+...+..-.|.++++.+.+
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHh
Confidence 33444444444444444444443
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.49 E-value=1.6e+02 Score=22.30 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=10.3
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 038606 107 LLQVYCNSGQFDKALSVFNEI 127 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~ 127 (666)
++.=|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444455555555555444
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.43 E-value=1.9e+02 Score=22.97 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=36.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCC--CHHhHHHHHH-H-----HHHcCChhHHHHHHHHHHH
Q 038606 546 KSGNIDQAMLCLSRMLEKESGSP--DVITYTTLID-G-----LCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 546 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 598 (666)
..|++-+|-++|+.+-...+ .+ ....|..||. + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~-~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYG-RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTC-SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34888888888888876654 34 4455666666 2 2456888888888888765
No 312
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.04 E-value=45 Score=21.03 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHHHhcc-CChHHHHHHHHHHHHcCCCCCChh
Q 038606 35 FLIRCLGSV-GLVEEANMLFDQVKREGLCVPNNY 67 (666)
Q Consensus 35 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 67 (666)
+-.+++..+ -|++.|...|..+...+.+||+.+
T Consensus 24 ~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 24 WSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 334455444 489999999999988776677654
No 313
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=30.35 E-value=2.7e+02 Score=24.19 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhHHHHHHHHHH
Q 038606 505 IISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCK-SGNIDQAMLCLSRML 561 (666)
Q Consensus 505 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 561 (666)
++....+.+++++.....+++.+.+...+..--+.|-.+|-. -|....+++++..+.
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 344445666677766666666666555555555554444422 233445555555444
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.28 E-value=1.8e+02 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=15.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 038606 537 YNLLINGWCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (666)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445566666677777777766653
No 315
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=30.27 E-value=2.5e+02 Score=27.51 Aligned_cols=48 Identities=15% Similarity=-0.008 Sum_probs=23.2
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
..++.|...|.++....|.+...|+.++......|+.-+|.-.|-+..
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555444455555555444444444444444433
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.66 E-value=3e+02 Score=29.86 Aligned_cols=133 Identities=9% Similarity=-0.115 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
...++..+...|.++-|.++.... |.++..-..++.+|...|++++|...|+++-. |+..+......
T Consensus 813 ~~~l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~------ 879 (950)
T 4gq2_M 813 VTELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV------ 879 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG------
T ss_pred HHHHHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc------
Confidence 334555666666666554432211 34444555677777777777777777776532 22211110000
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch----hhHHHHHHhhhcc
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE----KTFCVLIHGFVKK 183 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 183 (666)
......++... +........|..++..+-+.+-++-+.+.-+.+++.--+.|. ..|+.+.++.+..
T Consensus 880 ----~~~~~~ll~~~-e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 ----LREFQEIAEKY-HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp ----GHHHHHHHHHT-TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhhccCcc-cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00000111000 000011125677888888888888888888887764222222 2455666655543
No 317
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.60 E-value=1.9e+02 Score=25.12 Aligned_cols=23 Identities=4% Similarity=-0.072 Sum_probs=12.6
Q ss_pred ccCChhHHHHHHHHHHhCCCCCC
Q 038606 217 KNKQLEMALQLYSEMKGSGITPD 239 (666)
Q Consensus 217 ~~g~~~~a~~~~~~~~~~~~~~~ 239 (666)
..|+.....++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 44555445566666666665443
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.58 E-value=1.5e+02 Score=23.23 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=10.3
Q ss_pred HHHHHHHccCChhHHHHHHHHH
Q 038606 539 LLINGWCKSGNIDQAMLCLSRM 560 (666)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~ 560 (666)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3344444444555555544444
No 319
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.30 E-value=1.3e+02 Score=20.18 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=38.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 595 EMEEKGCAPNRITFMALITGLCKCD-RPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNP 656 (666)
Q Consensus 595 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 656 (666)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|.+..+..+...|-+
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 45566766665443 4445555443 4566777888877765455677777777777777654
No 320
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.94 E-value=2.2e+02 Score=22.67 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 038606 587 DDAIMLWNEMEEKGCAPN-RITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMF 641 (666)
Q Consensus 587 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 641 (666)
+.+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 458889999999877654 6677888888889999999999999999988788643
No 321
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.93 E-value=37 Score=20.71 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--hhHHHHHHHHH
Q 038606 590 IMLWNEMEEKGCAPNRITFMALITGLCKCDR--PRAALVHFRMM 631 (666)
Q Consensus 590 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~ 631 (666)
.+.++.+.+.|+++. ....++.+.|. .+.|++++.+|
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 344566666666553 22334455555 67777777666
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.50 E-value=41 Score=25.58 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
++..+...++.-.|.++++.+.+.+. .-+..|-+..+..+...|-+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~-~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGE-NIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTC-CCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCC-CCCHhhHHHHHHHHHHCCCEE
Confidence 44455555666778888888777652 346667777777777777543
No 323
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.50 E-value=1.7e+02 Score=20.79 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH-----HcCCCCCHHHHHHHH
Q 038606 587 DDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMK-----EKGMKPDMFVFVALI 647 (666)
Q Consensus 587 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~ 647 (666)
-.|.++.+++...|+.|+..+...++..|...+- + +.++.++.. ..|..|+...+..+=
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4567777888888888888888888888876664 2 444333332 247777777666543
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.89 E-value=86 Score=19.77 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.++|.+.|.+|++..--+...+|...++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356667777766654334556666666555
No 325
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=26.74 E-value=3.7e+02 Score=26.50 Aligned_cols=204 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 038606 412 GALNLVRKMRVQGH-EPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDI 490 (666)
Q Consensus 412 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 490 (666)
+|.+.++++...+. .++ .+.....+|+++|++.... .+.........-|...+-++.|+++.-..
T Consensus 28 KA~E~L~~Ak~~~~~d~~-----------~~~~~L~eAl~Lf~~va~~---l~l~~L~~~c~~~~~l~~y~GaVeL~L~~ 93 (525)
T 3i5p_A 28 RAIEHLRRAKEIGLRNYD-----------SLNYHLKNATALLEQIVDD---LSIEKLKEAVSMMLSVNYYPKSIEFLLNI 93 (525)
T ss_dssp HHHHHHHHHHHC----CH-----------HHHHHHHHHHC-------------CHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHH-----------HHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q ss_pred HhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH-----------------H
Q 038606 491 CAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQ-----------------A 553 (666)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-----------------a 553 (666)
-+. ..|....+....++.-... .....|++-.+ .|..+..++.+...... +
T Consensus 94 A~~-~Dp~~~Al~~~~~g~p~~D---~~~~~f~~R~~--------cY~~I~~~L~~ld~~a~~~~~~~~~~~~~~~~~~~ 161 (525)
T 3i5p_A 94 ANS-MDKGKLACQYVANGFLEND---DRKQYYDKRIL--------VYDLVFDTLIKVDELAEKKQSSKTQNQISISNDDE 161 (525)
T ss_dssp HHH-HHCSSHHHHHHHHTCSSSS---SCHHHHHHHHH--------HHHHHHHHHHHTC----------------------
T ss_pred HHh-hCCcccHHHHHhCCCCCcC---HHHHHHHHHHH--------HHHHHHHHHHHHHHHhhccCCCCCCccccccchhH
Q ss_pred HHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 038606 554 MLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIM----LWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFR 629 (666)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 629 (666)
.++.+++........|......+-+.+...|..++-++ .+....+...+.+......|.+-|.+.|++-+|.+++.
T Consensus 162 ~~~~~~~~~~~l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~ 241 (525)
T 3i5p_A 162 VKLRQKSYEAALKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILY 241 (525)
T ss_dssp --CCSTTHHHHSSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHH
Q ss_pred HHHHcCCCCCHH
Q 038606 630 MMKEKGMKPDMF 641 (666)
Q Consensus 630 ~~~~~~~~~~~~ 641 (666)
.+...+...+..
T Consensus 242 ~LA~s~~~i~L~ 253 (525)
T 3i5p_A 242 RLATSNFDITLF 253 (525)
T ss_dssp HHHSSSSCCCHH
T ss_pred HHHhCCCCCCHH
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.54 E-value=2.2e+02 Score=21.93 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=5.2
Q ss_pred hhhHHHHHHHHhh
Q 038606 151 VDKACELIERMDD 163 (666)
Q Consensus 151 ~~~A~~~~~~~~~ 163 (666)
.-.|.++++.+.+
T Consensus 37 ~~sa~ei~~~l~~ 49 (145)
T 2fe3_A 37 HPTADDIYKALEG 49 (145)
T ss_dssp CCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHH
Confidence 3334444444433
No 327
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.23 E-value=1.4e+02 Score=23.40 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=11.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 038606 106 PLLQVYCNSGQFDKALSVFNEI 127 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~ 127 (666)
.++.=|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.51 E-value=1e+02 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 139 SILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
......|.+.|.+++|.++|++....+ +.+...-..|+..-.+..
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~-~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDP-NSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC------CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCC-CCchHHHHHHHHHHHccC
Confidence 445668999999999999999976653 223333444444433333
No 329
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.31 E-value=2.7e+02 Score=22.55 Aligned_cols=152 Identities=12% Similarity=0.002 Sum_probs=67.2
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
++.+-...+.++...|+.+ +...+..++. .++.......+.++.+.|+.+. ...+..++. .+++.+-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDER-AVEPLIKALK----DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 4444444455555555422 2333333332 2455555555556665555432 333333333 13555555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDK 188 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (666)
.++.+.++.+ +...+..+... .++.+-...+.++...|+. .+...+..+... ++..+-...+.++.+.|.. +
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~-~ 169 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALKD--EDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGGE-R 169 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC--SSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-H
T ss_pred HHHHHhCcHH-HHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-h
Confidence 5555555543 22333333322 2444445555555555543 333444444432 2444444455555555442 3
Q ss_pred HHHHHHHHH
Q 038606 189 ALQLFDKMT 197 (666)
Q Consensus 189 A~~~~~~~~ 197 (666)
+...+..+.
T Consensus 170 ~~~~L~~~l 178 (201)
T 3ltj_A 170 VRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.83 E-value=3e+02 Score=22.79 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=26.4
Q ss_pred cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCC
Q 038606 477 IKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQR-----VAEAEDLFNEMITKGLI 531 (666)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 531 (666)
-.+++.|+-.+.+|++.| .|....-..++.+...-|. ...|...++.....|.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 356666666666666666 4444444444444444332 22334444444444543
No 331
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.64 E-value=3.9e+02 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 104 LTPLLQVYCNSGQFDKALSVFNEII 128 (666)
Q Consensus 104 ~~~l~~~~~~~~~~~~A~~~~~~~~ 128 (666)
...++.-|+..|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567777888888888888887754
No 332
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.54 E-value=57 Score=22.04 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc
Q 038606 34 GFLIRCLGSVGLVEEANMLFDQVKRE 59 (666)
Q Consensus 34 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 59 (666)
..++|-|+..|+|+.|..+|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 45788899999999999999888763
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.38 E-value=2.5e+02 Score=21.80 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=4.8
Q ss_pred hhhHHHHHHHHh
Q 038606 151 VDKACELIERMD 162 (666)
Q Consensus 151 ~~~A~~~~~~~~ 162 (666)
.-.|.++++.+.
T Consensus 42 ~~sa~ei~~~l~ 53 (150)
T 2xig_A 42 HLSPEEITHSIR 53 (150)
T ss_dssp CBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 333444444443
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.26 E-value=2.9e+02 Score=24.18 Aligned_cols=182 Identities=13% Similarity=0.040 Sum_probs=78.5
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCC
Q 038606 40 LGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK---YTLTPLLQVYCNSGQ 116 (666)
Q Consensus 40 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 116 (666)
....|+.+-+..+++.-...+ ..+ -.+.+...+..|+.+-+..++ +.|..++. .-.+.+ ...+..|+
T Consensus 38 A~~~g~~~~v~~Ll~~g~~~~--~~~---g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L-~~A~~~g~ 107 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGALKN--LLE---NEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTAL-YYAVDSGN 107 (285)
T ss_dssp HHHTTCHHHHHHHHHTTGGGS--CCT---TCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHcCCHHHHHHHHhCCCCCC--CCC---CCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHH-HHHHHcCC
Confidence 344577666655555422211 122 123444555667765544443 34443332 222223 33346677
Q ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc-chhhHHHHHHhhhccCCHHHHHHHHHH
Q 038606 117 FDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL-NEKTFCVLIHGFVKKSRVDKALQLFDK 195 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (666)
.+-+.-+++.-...+..+..-+...+...+..|+.+-+.-+ .+.+..+ +...-...+...+..|+.+-+.-+++.
T Consensus 108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 66665555542222212222222333444455655443333 3333222 111233444455567777766666665
Q ss_pred HHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH
Q 038606 196 MTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF 240 (666)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 240 (666)
-...+. .|..-++..+...+..|+. ++.+.+.+.|..++.
T Consensus 184 gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 184 MTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred CCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 433221 1111111112223334443 344555566666654
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.16 E-value=2.5e+02 Score=21.80 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 038606 120 ALSVFNEI 127 (666)
Q Consensus 120 A~~~~~~~ 127 (666)
|.++++.+
T Consensus 36 a~ei~~~l 43 (150)
T 2w57_A 36 AEELYKKL 43 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.84 E-value=2.4e+02 Score=21.40 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 038606 119 KALSVFNEII 128 (666)
Q Consensus 119 ~A~~~~~~~~ 128 (666)
.|.++++.+.
T Consensus 36 sa~ei~~~l~ 45 (136)
T 1mzb_A 36 SAEDVYKALM 45 (136)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3333333333
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.81 E-value=45 Score=25.73 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=0.0
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccC
Q 038606 1 MASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVG 44 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (666)
+..+|...+....|+++++.+.+.++..|..+.+.-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
No 338
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.59 E-value=3.1e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHcC
Q 038606 443 GKAMEAFRFLTDMVQEG 459 (666)
Q Consensus 443 ~~~~~a~~~~~~~~~~~ 459 (666)
.+.+.|+-++-+|++.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 339
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.53 E-value=2.1e+02 Score=26.27 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEI 127 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~ 127 (666)
..++.=|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34555555666666666665554
No 340
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.51 E-value=7.1e+02 Score=26.74 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=78.8
Q ss_pred HHHHhccCC---hHHHHHHHHHHHHcC---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038606 37 IRCLGSVGL---VEEANMLFDQVKREG---LCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV 110 (666)
Q Consensus 37 ~~~~~~~~~---~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (666)
+...+..|. .+.|.+.|+...... .++|+. .......-.+.|+.++-..++++.... .+..--..++.+
T Consensus 693 l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~a 767 (909)
T 4fke_A 693 ISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRSA 767 (909)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHHH
Confidence 334444444 357778887776532 123443 334444455677777666667776653 234445567777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHhcCChhhHHHHHHH----HhhCCCCcchhhHHHHHHhhhccCC
Q 038606 111 YCNSGQFDKALSVFNEIIDHGWVDE-HVFSILLVAFSKWGEVDKACELIER----MDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 111 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
++-..+.....++++.+...+...+ +....+.......-..+.|.+.+.. +.+ ........+..++......-.
T Consensus 768 L~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~-~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQ-DYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTT-SSSSCCCCHHHHHHHHHTTCC
T ss_pred hCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHhcC
Confidence 7777888888888877765443333 3333333222222223344444433 212 122344456666665544333
Q ss_pred HHHHHHHHHHHH
Q 038606 186 VDKALQLFDKMT 197 (666)
Q Consensus 186 ~~~A~~~~~~~~ 197 (666)
-++-.+-++...
T Consensus 847 t~~~~~~~~~f~ 858 (909)
T 4fke_A 847 SEFELQQLEQFK 858 (909)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 333333344433
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.14 E-value=2.1e+02 Score=22.14 Aligned_cols=11 Identities=0% Similarity=0.211 Sum_probs=4.4
Q ss_pred hHHHHHHHHhh
Q 038606 153 KACELIERMDD 163 (666)
Q Consensus 153 ~A~~~~~~~~~ 163 (666)
.|.++++.+.+
T Consensus 35 ta~ei~~~l~~ 45 (145)
T 3eyy_A 35 TPDDILGEVRK 45 (145)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 34444444433
No 342
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.58 E-value=57 Score=27.88 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=30.7
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALC 77 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (666)
+-+..+++..-+.+++++..+...++.+.+. ..+.+-.+.|..+|-
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~-eLt~EERnLLsvayK 51 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDV-ELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHH
Confidence 3455667777777888888888877777653 456666666665554
No 343
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.30 E-value=3.9e+02 Score=23.21 Aligned_cols=122 Identities=11% Similarity=0.066 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHhcCCCCCCHHhHHH
Q 038606 497 PDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSG-NIDQAMLCLSRMLEKESGSPDVITYTT 575 (666)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 575 (666)
++..+-...+.++...|.. .+...+..+... ++..+-...+.+....| +...+...+..+.. .++...-..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~ 211 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDK-ATIPLLINLLKD---PNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIE 211 (280)
T ss_dssp SCHHHHHHHHHHHHTC----CCHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHH
Confidence 3444444444555555442 233344444332 34444444444444433 22344444444433 244444445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 576 LIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
.+.++...|+.. +...+..+.+. ++ .-...+.++.+.|. ..+...+..+.+
T Consensus 212 A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 212 AIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 555666666443 33333333321 22 22233445555555 345555555543
No 344
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.26 E-value=5.9e+02 Score=25.30 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.+..+...+.+..+-.-.+..--.-++..|.+.|-.+.|..+++.+-.+
T Consensus 497 ~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k 545 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ 545 (570)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 3444444444443321223333444555666666666666666655543
No 345
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.45 E-value=5.5e+02 Score=24.69 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCC-Cc---------hHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWV-DE---------HVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
+.+.+.|.+.|+..-+..+++.+...+.. +. .-...++..+...+++.+|.+.|..+..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 33444555555555555555444443221 00 1123444455555555555555554443
No 346
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.46 E-value=1.4e+02 Score=20.86 Aligned_cols=25 Identities=20% Similarity=-0.004 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVK 57 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~ 57 (666)
+...+..+.+.|+|++|++....+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567888888999999888776655
No 347
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.35 E-value=3.8e+02 Score=22.37 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=26.9
Q ss_pred cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCC
Q 038606 477 IKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQR-----VAEAEDLFNEMITKGLI 531 (666)
Q Consensus 477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 531 (666)
-.+++.|+-.+.+|++.|..|....-..++.+...-|. ...|...++.....|.+
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35566666666666666555544444444444433332 23344444444444543
Done!