BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038610
         (374 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224127630|ref|XP_002329325.1| predicted protein [Populus trichocarpa]
 gi|222870779|gb|EEF07910.1| predicted protein [Populus trichocarpa]
          Length = 392

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/392 (86%), Positives = 355/392 (90%), Gaps = 18/392 (4%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MA+ +S+IAWGSGEDGQLGIGNNEE+EWVC+VKALEPYKVRSVVAGSRNSLAICDDGK  
Sbjct: 1   MATESSVIAWGSGEDGQLGIGNNEEKEWVCIVKALEPYKVRSVVAGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTENIPSQV AL+N  IVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTENIPSQVKALANVNIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEPERKDDTGR LRRDIVIPQRCA KL+VRQVAAGGTHSVVLTREGHVW+WGQPWP
Sbjct: 121 GQCGEEPERKDDTGRPLRRDIVIPQRCASKLVVRQVAAGGTHSVVLTREGHVWSWGQPWP 180

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE+V+LIAVGAFHNLALQEDG LWAWGNNEYGQLGTGDTQPRSQP
Sbjct: 181 PGDIKQISVPVRVQGLERVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQP 240

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           I VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ+VNLL
Sbjct: 241 ITVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVNLL 300

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            GEDIVQVSCGGTHSVALTRDG +++FGRGDHGRLGYGRKVTTGQPMEVPI+IP P+N  
Sbjct: 301 VGEDIVQVSCGGTHSVALTRDGRMYTFGRGDHGRLGYGRKVTTGQPMEVPIDIPPPKNLT 360

Query: 344 DGVDR-RWIAKLVACGGRHTLAIVEWQTEESK 374
           D  D  RWIAKLVA GGRHTLAIVEW T +SK
Sbjct: 361 DSGDAGRWIAKLVASGGRHTLAIVEWHTGDSK 392


>gi|255551398|ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinus communis]
 gi|223544118|gb|EEF45643.1| Ran GTPase binding protein, putative [Ricinus communis]
          Length = 393

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/393 (85%), Positives = 356/393 (90%), Gaps = 19/393 (4%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MA+ TS+IAWG+GEDGQLGIG NEE+EWVCVV ALEPYKVRSVVAGSRNSLAICDDGK  
Sbjct: 1   MATHTSLIAWGAGEDGQLGIGINEEKEWVCVVNALEPYKVRSVVAGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTENIPSQV AL+N  IVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPAETKTENIPSQVKALNNVNIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEPERKDDTG+ LRRDIVIPQRCAPKL+VRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEPERKDDTGKTLRRDIVIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWGQPWP 180

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE+VKLIAVGAFHNLALQEDG LWAWGNNEYGQLGTGDTQPRSQP
Sbjct: 181 PGDIKQISVPVRVQGLEKVKLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQP 240

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL
Sbjct: 241 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 300

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           AGEDIVQ+SCGGTHSVALT+DG +FSFGRGDHGRLGYG+KVTTGQP+EVP +IP P++  
Sbjct: 301 AGEDIVQLSCGGTHSVALTQDGRMFSFGRGDHGRLGYGKKVTTGQPVEVPTDIPPPKSLS 360

Query: 344 --DGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
             +  +  WIAKLVACGGRHTLAIVEW+ +ESK
Sbjct: 361 GTEEAEGHWIAKLVACGGRHTLAIVEWKVDESK 393


>gi|356573964|ref|XP_003555124.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 395

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/395 (83%), Positives = 350/395 (88%), Gaps = 22/395 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           M S + IIAWGSGEDGQLGIG+NEE+EWVC+VKAL+P+++RSVVAGSRNSLAI DDGK  
Sbjct: 1   MDSHSHIIAWGSGEDGQLGIGSNEEKEWVCLVKALQPHRIRSVVAGSRNSLAIADDGKLF 60

Query: 59  -------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
                               KTEN PSQV ALS+ KIVQAAIGGWHCLAVDDQGRAYAWG
Sbjct: 61  TWGWNQRATLGHPAETKSENKTENTPSQVKALSSVKIVQAAIGGWHCLAVDDQGRAYAWG 120

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
           GNEYGQCGEEPERKD TGR LRRDI IPQRCAPKL+VRQVAAGGTHSVVLTREGHVWTWG
Sbjct: 121 GNEYGQCGEEPERKDGTGRPLRRDIEIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWG 180

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           QPWPPGDIKQISVPVRVQGLE V+LIAVGAFHNLALQEDG LWAWGNNEYGQLGTGDTQP
Sbjct: 181 QPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQP 240

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RSQPI VQGLS LTLVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGD+DKSSKMVPQK
Sbjct: 241 RSQPIRVQGLSDLTLVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGDSDKSSKMVPQK 300

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V LLAGEDIVQVSCGGTHSVALTRDGH+FSFGRGDHGRLGYGRKVTTGQPMEVPI++P P
Sbjct: 301 VQLLAGEDIVQVSCGGTHSVALTRDGHMFSFGRGDHGRLGYGRKVTTGQPMEVPIDLPPP 360

Query: 340 RN-AGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
           ++ +G   +  WIAKLVACGGRHTLAIVEW++ ES
Sbjct: 361 QDPSGTATEGHWIAKLVACGGRHTLAIVEWKSNES 395


>gi|449447492|ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC1-like [Cucumis sativus]
          Length = 390

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/389 (82%), Positives = 345/389 (88%), Gaps = 19/389 (4%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MA+ T+IIAWGSGEDGQLG+GNNEEREWVC +KALE   V SVVAGSRNSLAI +DGK  
Sbjct: 1   MAAGTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAITEDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TK+EN+PSQV ALSN KIVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEPE+KD+TGR  RRDI IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEPEKKDNTGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 180

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDI QISVPVRVQGL+ V+LIAVGAFHNLALQEDG LWAWGNNEYGQLGTGDTQPRSQP
Sbjct: 181 PGDITQISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQP 240

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGLSGLTLVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGDNDKSSKMVPQKV LL
Sbjct: 241 IPVQGLSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLL 300

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           +GE+IVQ+SCGGTHSVA+T DG +FSFGRGDHGRLGYGRKVTTGQP EVPI+IP PR  G
Sbjct: 301 SGEEIVQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPIDIPPPR--G 358

Query: 344 DGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
              +  WIAKLVACGGRHTLA+V+W++E+
Sbjct: 359 RTENGHWIAKLVACGGRHTLALVQWKSED 387


>gi|449481449|ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC1-like [Cucumis sativus]
          Length = 390

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/389 (82%), Positives = 344/389 (88%), Gaps = 19/389 (4%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MA+ T+IIAWGSGEDGQLG+GNNEEREWVC +KALE   V SVVAGSRNSLAI +DGK  
Sbjct: 1   MAAGTAIIAWGSGEDGQLGLGNNEEREWVCAIKALESQNVCSVVAGSRNSLAITEDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TK+EN+PSQV ALSN KIVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPAGTKSENVPSQVKALSNVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEPE+KD+TGR  RRDI IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEPEKKDNTGRPPRRDIAIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 180

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDI QISVPVRVQGL+ V+LIAVGAFHNLALQEDG LWAWGNNEYGQLGTGDTQPRSQP
Sbjct: 181 PGDITQISVPVRVQGLDMVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQP 240

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGLSGLTLVDIAAGGWHSTALTD+GEVYGWGRGEHGRLGFGDNDKSSKMVPQKV LL
Sbjct: 241 IPVQGLSGLTLVDIAAGGWHSTALTDNGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVQLL 300

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           +GE+IVQ+SCGGTHSVA+T DG +FSFGRGDHGRLGYGRKVTTGQP EVPI+IP PR  G
Sbjct: 301 SGEEIVQISCGGTHSVAVTSDGRMFSFGRGDHGRLGYGRKVTTGQPEEVPIDIPPPR--G 358

Query: 344 DGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
              +  WIAKLVACGGRHTLA+V+W+ E+
Sbjct: 359 RTENGHWIAKLVACGGRHTLALVQWKPED 387


>gi|90657578|gb|ABD96878.1| hypothetical protein [Cleome spinosa]
          Length = 393

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/391 (80%), Positives = 347/391 (88%), Gaps = 22/391 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           MA++T++IAWGSGEDGQLG+G N+E+EWVCVV+ALEPY VRSVV+GSRNSLAICDDG   
Sbjct: 1   MAASTTVIAWGSGEDGQLGLGTNDEKEWVCVVEALEPYAVRSVVSGSRNSLAICDDGTLF 60

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         +TKTENIPSQV AL+N KIVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTENIPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+  R LRRDIVIP+RCAPKL+VRQVAAGGTHSVVLTREGHVW+WGQPWP
Sbjct: 121 GQCGEEPG-KDEMERPLRRDIVIPKRCAPKLVVRQVAAGGTHSVVLTREGHVWSWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQIS+PVRVQGLE V+LIAVGAFHNLAL+E+G LWAWGNNEYGQLGTGDTQPRSQP
Sbjct: 180 PGDIKQISIPVRVQGLENVRLIAVGAFHNLALEENGTLWAWGNNEYGQLGTGDTQPRSQP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGL  LTLVDIAAGGWHSTALTD GEVYGWGRGEHGRLGFGDNDKSSKM+PQKVNLL
Sbjct: 240 IPVQGLDSLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLL 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR--- 340
           AGEDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLG GRKVTTGQP++VP+ IP P    
Sbjct: 300 AGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGCGRKVTTGQPLDVPVKIPPPEGQF 359

Query: 341 -NAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
            +A +  D +W+AK+VACGGRHTLAIVEW++
Sbjct: 360 NDAAEDDDGKWVAKVVACGGRHTLAIVEWKS 390


>gi|42563438|ref|NP_186900.3| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
 gi|110735845|dbj|BAE99899.1| hypothetical protein [Arabidopsis thaliana]
 gi|332640299|gb|AEE73820.1| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
          Length = 393

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 314/393 (79%), Positives = 338/393 (86%), Gaps = 22/393 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           M + TSIIAWGSGEDGQLGIG NEE+EW CVV+ALEPY VRSVV+GSRNSLAICDDG   
Sbjct: 1   MVTATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         +TKTENIPS+V AL+N KI QAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+ GR +RRDIVIP+RCAPKL VRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEP-LKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE V+LIAVGAFHNLAL+EDG L AWGNNEYGQLGTGDTQP S P
Sbjct: 180 PGDIKQISVPVRVQGLENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           +PVQGL  LTLVDIAAGGWHSTALTD GEVYGWGRGEHGRLG GDNDKSSKMVPQKVNLL
Sbjct: 240 VPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLL 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           A EDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLGYGRKVTTGQP+E+PI IP P  + 
Sbjct: 300 AEEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIKIPPPEGSF 359

Query: 344 DGVDR----RWIAKLVACGGRHTLAIVEWQTEE 372
           +  D     +W AK +ACGGRHTLAIVEW++++
Sbjct: 360 NHTDEEEEGKWSAKSIACGGRHTLAIVEWKSDD 392


>gi|225451993|ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
 gi|296087299|emb|CBI33673.3| unnamed protein product [Vitis vinifera]
          Length = 395

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 321/393 (81%), Positives = 335/393 (85%), Gaps = 20/393 (5%)

Query: 1   MAST-TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK- 58
           MAS   +II+WGSGEDGQLGIGNNEE+EWVC VKAL    V SVVAGSRNSLAIC+DGK 
Sbjct: 1   MASKPKAIISWGSGEDGQLGIGNNEEKEWVCAVKALAAQNVCSVVAGSRNSLAICEDGKL 60

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           TKTENIPSQV AL+N KIVQAAIGGWHCLAVDDQGRAYAWGGNE
Sbjct: 61  FTWGWNQRGTLGHPPETKTENIPSQVKALANAKIVQAAIGGWHCLAVDDQGRAYAWGGNE 120

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           YGQCGEEPERKDDTGR LRRDI IPQRCA KL VRQVAAGGTHSVVLTREGHVWTWGQPW
Sbjct: 121 YGQCGEEPERKDDTGRPLRRDITIPQRCASKLSVRQVAAGGTHSVVLTREGHVWTWGQPW 180

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           PPGDIKQIS PVRVQGLE+V+LIAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQ
Sbjct: 181 PPGDIKQISTPVRVQGLEKVRLIAVGAFHNLALLEDGILWAWGNNEYGQLGTGDTQPRSQ 240

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           PI VQGLS LTLVDIAAGGWHSTALTDDG VYGWGRGEHGRLGFGD DKSSKMVPQKV L
Sbjct: 241 PIAVQGLSDLTLVDIAAGGWHSTALTDDGGVYGWGRGEHGRLGFGD-DKSSKMVPQKVQL 299

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN- 341
           L  E+IVQ+SCGGTHSVALTRDG +FSFGRGDHGRLGYGRKVTTG PMEVPIN+P   N 
Sbjct: 300 LVEENIVQISCGGTHSVALTRDGRMFSFGRGDHGRLGYGRKVTTGHPMEVPINLPPATNL 359

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
           +G G    W +KLVACGGRHTLAIVEW   E +
Sbjct: 360 SGSGAGGHWCSKLVACGGRHTLAIVEWLAHEPE 392


>gi|297832882|ref|XP_002884323.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297330163|gb|EFH60582.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 393

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 313/393 (79%), Positives = 336/393 (85%), Gaps = 22/393 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           M S TSIIAWGSGEDGQLGIG NEE+EW CVV+ALEPY VRSVV+GSRNSLAICDDG   
Sbjct: 1   MVSATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         +TKTENIPS+V AL+N KI QAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+ GR +RRDIVIP+RCAPKL VRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEP-LKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQI VPVRVQGLE V +IAVGAFHNLAL+EDG L AWGNNEYGQLGTGDTQP S P
Sbjct: 180 PGDIKQIFVPVRVQGLENVSIIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           +PV GL  LTLVDIAAGGWHSTALTD GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL
Sbjct: 240 VPVHGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           A EDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLGYGRKVTTGQP+E+PI IP P  + 
Sbjct: 300 AEEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIMIPPPEGSF 359

Query: 344 DGVDR----RWIAKLVACGGRHTLAIVEWQTEE 372
           +  D     +W AK +ACGGRHTLAIVEW++++
Sbjct: 360 NHADEEEEGKWSAKWIACGGRHTLAIVEWKSDD 392


>gi|15237253|ref|NP_197108.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|9755650|emb|CAC01803.1| UVB-resistance protein-like [Arabidopsis thaliana]
 gi|114213505|gb|ABI54335.1| At5g16040 [Arabidopsis thaliana]
 gi|332004857|gb|AED92240.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 396

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 312/395 (78%), Positives = 340/395 (86%), Gaps = 22/395 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MAS TS+IAWGSGEDGQLG+G +EE+E   VV ALEP+ VRSVV GSRNSLAICDDGK  
Sbjct: 1   MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTE+ PS V +L+N KIVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+TGR +RRDIVIP+RCA +L VRQVAAGGTHSVVLTREG+VWTWGQPWP
Sbjct: 121 GQCGEEPS-KDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE V+LIAVGAFHNLAL+EDG LWAWGNNEYGQLGTGDTQPRS P
Sbjct: 180 PGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGL  LTLVDIAAGGWHSTALT++GEVYGWGRGEHGRLGFGDNDKSSKM+PQKVNLL
Sbjct: 240 IPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLL 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           AGEDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLGYGRKVTTGQP+E+PI+IP P    
Sbjct: 300 AGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRF 359

Query: 344 DGVDR----RWIAKLVACGGRHTLAIVEWQTEESK 374
           +  D     +WIAK VACGGRHTLAIVEW+ ++ +
Sbjct: 360 NHTDEEDDGKWIAKHVACGGRHTLAIVEWKYDQEE 394


>gi|297811737|ref|XP_002873752.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297319589|gb|EFH50011.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 396

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 310/393 (78%), Positives = 340/393 (86%), Gaps = 22/393 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MAS TS+IAWGSGEDGQLG+G +EE+E   VV+ALEP+ VRSVV GSRNSLAICDDGK  
Sbjct: 1   MASATSVIAWGSGEDGQLGLGTDEEKELASVVEALEPFNVRSVVGGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTE+ PS V +L++ KIVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTESTPSLVKSLASVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+TGR +RRDIVIP+RCAP+L VRQVAAGGTHSVVLTREG+VWTWGQPWP
Sbjct: 121 GQCGEEPS-KDETGRPVRRDIVIPKRCAPQLTVRQVAAGGTHSVVLTREGYVWTWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQIS+PVRVQGLE V+LIAVGAFHNLAL+EDG LWAWGNNEYGQLGTGDTQPRS P
Sbjct: 180 PGDIKQISIPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSFP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGL  LTLVDIAAGGWHSTALT++GEVYGWGRGEHGRLGFGDNDKSSKM+PQKVNLL
Sbjct: 240 IPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLL 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           AGEDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLGYGRKVTTGQP+E+PI+IP      
Sbjct: 300 AGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIDIPPLEGRF 359

Query: 344 DGVDR----RWIAKLVACGGRHTLAIVEWQTEE 372
           +  D     +WIAK VACGGRHTLAIVEW+ ++
Sbjct: 360 NHTDEEDDGKWIAKHVACGGRHTLAIVEWKFDQ 392


>gi|21537357|gb|AAM61698.1| UVB-resistance protein-like [Arabidopsis thaliana]
          Length = 396

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 310/395 (78%), Positives = 338/395 (85%), Gaps = 22/395 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MAS TS+IAWGSGEDGQLG+G +EE+E   VV ALEP+ VRSVV GSRNSLAICDDGK  
Sbjct: 1   MASATSVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTE+ PS V +L+N KIVQAAIG WHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGAWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+TGR +RRDIVIP+RCA +L VRQVAAGGTHSVVLTREG+VWTWGQPWP
Sbjct: 121 GQCGEEPS-KDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE V+LIAVGAFHNLAL+EDG LWAWGNNEYGQLGTGDTQPRS P
Sbjct: 180 PGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           IPVQGL  LTLVDIAAGGWHSTALT++GEVYGWGRGEHGRLGFGDNDKSSKM+PQKVNLL
Sbjct: 240 IPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLL 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            GEDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLGYGRKVTTGQP+E+PI+IP P    
Sbjct: 300 PGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRF 359

Query: 344 DGVDR----RWIAKLVACGGRHTLAIVEWQTEESK 374
           +  D     +WIAK VACGGRHTLAIVEW+ ++ +
Sbjct: 360 NHTDEEDDGKWIAKHVACGGRHTLAIVEWKYDQEE 394


>gi|294462324|gb|ADE76711.1| unknown [Picea sitchensis]
          Length = 390

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/391 (74%), Positives = 323/391 (82%), Gaps = 21/391 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY--KVRSVVAGSRNSLAICDDGK 58
           M S  +++AWGSGEDGQLG+GN E+++WVC ++AL  +  +V SVVAGSRNSLAIC+DG+
Sbjct: 1   MESDHAVLAWGSGEDGQLGVGNMEDKDWVCSIQALASHGKRVVSVVAGSRNSLAICEDGQ 60

Query: 59  -----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                            +KTE+ P+QV AL N KIVQAAIGGWHCLAVDDQG+AYAWGGN
Sbjct: 61  LFTWGWNQRGTLGHPPESKTESTPTQVKALENVKIVQAAIGGWHCLAVDDQGQAYAWGGN 120

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           EYGQCGEEPERK+D  ++LRRDI IPQRCAP+L VRQVAAGGTHSVVLT  GHVWTWGQP
Sbjct: 121 EYGQCGEEPERKEDGSKVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQP 180

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WPPGDIKQIS PVRVQGLE V+LIAVGAFHNLAL E+G +WAWGNNEYGQLGTGDTQPRS
Sbjct: 181 WPPGDIKQISTPVRVQGLENVQLIAVGAFHNLALLEEGEVWAWGNNEYGQLGTGDTQPRS 240

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           QP+PVQGLSGL L DIAAGGWHSTALT D EVY WGRGEHGRLGFGD DKSSKMVPQKV+
Sbjct: 241 QPVPVQGLSGLILADIAAGGWHSTALTTDAEVYAWGRGEHGRLGFGD-DKSSKMVPQKVH 299

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           LLAGE I QVSCGGTHSVA T DG IFS+GR DHGRLGYGRKVTTG PMEVPI I  P+N
Sbjct: 300 LLAGETIAQVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTGHPMEVPIGIRPPKN 359

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
           A +     W  KLVACGGRHTLA   W++EE
Sbjct: 360 AAEN-SGCWFVKLVACGGRHTLATASWESEE 389


>gi|226507778|ref|NP_001140994.1| uncharacterized protein LOC100273073 [Zea mays]
 gi|194702086|gb|ACF85127.1| unknown [Zea mays]
 gi|413922319|gb|AFW62251.1| putative regulator of chromosome condensation (RCC1) family protein
           isoform 1 [Zea mays]
 gi|413922320|gb|AFW62252.1| putative regulator of chromosome condensation (RCC1) family protein
           isoform 2 [Zea mays]
          Length = 389

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 295/381 (77%), Positives = 321/381 (84%), Gaps = 21/381 (5%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           T+++AWGSGEDGQLG+G NEE++W   V+AL PY V +VVAGSRNSLAICDDG+      
Sbjct: 8   TAVLAWGSGEDGQLGMGGNEEKDWPHFVEALGPYAVTAVVAGSRNSLAICDDGRLFTWGW 67

Query: 59  -----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                      TKTE+ P  V+AL+  KIVQAAIGGWHCLAVDD+GRAYAWGGNEYGQCG
Sbjct: 68  NQRGTLGHPPETKTESSPGPVDALAGFKIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQCG 127

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           EEPERK+D  R LRRDI IPQRCA KL VRQVAAGGTHSVVLT+EGHVWTWGQPWPPGDI
Sbjct: 128 EEPERKEDGTRALRRDIPIPQRCALKLKVRQVAAGGTHSVVLTQEGHVWTWGQPWPPGDI 187

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           KQIS PVRVQGLE+V++IAVGAFHNLAL ED  LWAWGNNEYGQLGTGDTQPRSQPI V+
Sbjct: 188 KQISTPVRVQGLEKVRVIAVGAFHNLALTEDVILWAWGNNEYGQLGTGDTQPRSQPIRVE 247

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GLS L+LVDIAAGGWHSTALT DGEVY WGRGEHGRLGFGD DKSS MVP KV LLAGED
Sbjct: 248 GLSDLSLVDIAAGGWHSTALTIDGEVYAWGRGEHGRLGFGD-DKSSHMVPLKVELLAGED 306

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           IVQVSCGGTHSVAL RDG +FS+GRGDHGRLGYGRKVTTG PME+PIN+P   ++ DG  
Sbjct: 307 IVQVSCGGTHSVALARDGRMFSYGRGDHGRLGYGRKVTTGHPMELPINLPPLSSSRDG-- 364

Query: 348 RRWIAKLVACGGRHTLAIVEW 368
            RW AK VACGGRHTLAI EW
Sbjct: 365 -RWQAKYVACGGRHTLAIAEW 384


>gi|357147842|ref|XP_003574510.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
           distachyon]
          Length = 389

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/385 (75%), Positives = 316/385 (82%), Gaps = 19/385 (4%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           +    +++AWGSGEDGQLG+G  +E++W   V AL+PY V +VVAGSRNSLAICDDG+  
Sbjct: 4   LPRPAAVLAWGSGEDGQLGMGGCDEKDWAHRVAALDPYAVSAVVAGSRNSLAICDDGRLF 63

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTE+ P+ V AL+  KIVQAAIGGWHCLAVDD+GRAYAWGGNEY
Sbjct: 64  TWGWNQRGTLGHPPETKTESSPAPVEALAGVKIVQAAIGGWHCLAVDDKGRAYAWGGNEY 123

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEPERK+D  R LRRDI  PQRCA KL V+QVAAGGTHSVVLT+EGHVWTWGQPWP
Sbjct: 124 GQCGEEPERKEDGTRALRRDIPTPQRCALKLKVQQVAAGGTHSVVLTQEGHVWTWGQPWP 183

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQIS PVRVQGLE+V +IAVGAFHNLAL ED  LWAWGNNEYGQLG GDTQPRSQP
Sbjct: 184 PGDIKQISTPVRVQGLEKVMMIAVGAFHNLALSEDAVLWAWGNNEYGQLGIGDTQPRSQP 243

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           I V+GLSGL+LVDIAAGGWHSTALT DGEVY WGRGEHGRLGFGD DKSS MVP KV LL
Sbjct: 244 IRVEGLSGLSLVDIAAGGWHSTALTKDGEVYAWGRGEHGRLGFGD-DKSSHMVPLKVQLL 302

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            GEDIVQVSCGGTHSVALT DG IFS+GRGDHGRLGYGRKVTTG PMEVP+N+P P+ + 
Sbjct: 303 DGEDIVQVSCGGTHSVALTSDGRIFSYGRGDHGRLGYGRKVTTGHPMEVPLNLPPPKTSA 362

Query: 344 DGVDRRWIAKLVACGGRHTLAIVEW 368
            G D  W A  VACGGRHTLAIV W
Sbjct: 363 -GPDGLWQANFVACGGRHTLAIVTW 386


>gi|218201187|gb|EEC83614.1| hypothetical protein OsI_29322 [Oryza sativa Indica Group]
          Length = 395

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/381 (75%), Positives = 316/381 (82%), Gaps = 18/381 (4%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           T+++AWGSGEDGQLG+G  EE +W   V AL+   V +VVAGSRNSLAIC DG+      
Sbjct: 11  TAVLAWGSGEDGQLGMGGYEEEDWARGVAALDALAVSAVVAGSRNSLAICADGRLFTWGW 70

Query: 59  -----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                      TKTE+ P+ V+AL+   IVQAAIGGWHCLAVDD+GRAYAWGGNEYGQCG
Sbjct: 71  NQRGTLGHPPETKTESSPAPVDALAGVSIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQCG 130

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           EE ERK+D  R LRRDI IPQRCAPKL VRQVAAGGTHSVVLT++GHVWTWGQPWPPGDI
Sbjct: 131 EEAERKEDGTRALRRDIPIPQRCAPKLKVRQVAAGGTHSVVLTQDGHVWTWGQPWPPGDI 190

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           KQIS PVRVQGLE VK+IAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQPI V+
Sbjct: 191 KQISTPVRVQGLENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPRSQPIRVE 250

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GLS L+LVDIAAGGWHSTALT +GEVY WGRGEHGRLGFGD DKSS MVPQKV LLAGED
Sbjct: 251 GLSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGD-DKSSHMVPQKVELLAGED 309

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           I+QVSCGGTHSVALTRDG +FS+GRGDHGRLGYGRKVTTG PMEVPI++P P  +G    
Sbjct: 310 IIQVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVTTGHPMEVPIDLPPPGTSGGDSG 369

Query: 348 RRWIAKLVACGGRHTLAIVEW 368
            +W A+ VACGGRHTLAI  W
Sbjct: 370 GQWQARYVACGGRHTLAIATW 390


>gi|226495691|ref|NP_001141854.1| uncharacterized protein LOC100273996 [Zea mays]
 gi|194706180|gb|ACF87174.1| unknown [Zea mays]
          Length = 391

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/381 (76%), Positives = 317/381 (83%), Gaps = 19/381 (4%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           T+++AWGSGEDGQLG+G NEE++W   V+AL  Y V +VVAGSRNSLAIC+DG       
Sbjct: 8   TAVLAWGSGEDGQLGMGGNEEKDWAHCVEALGSYAVTAVVAGSRNSLAICEDGRLFTWGW 67

Query: 58  ----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     KTKTE+ P  V+AL+  KIVQAAIGGWHCLAVDD G AYAWGGNEYGQCG
Sbjct: 68  NQRGTLGHPPKTKTESSPGPVHALAGLKIVQAAIGGWHCLAVDDNGHAYAWGGNEYGQCG 127

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           EEPERK+D  R LRRDI  PQRCAPKL VRQVAAGGTHSVVLT+EGHVWTWGQPWPPGDI
Sbjct: 128 EEPERKEDGTRALRRDIPTPQRCAPKLKVRQVAAGGTHSVVLTQEGHVWTWGQPWPPGDI 187

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           KQIS PVRVQGLE+V++IAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRS PI V+
Sbjct: 188 KQISTPVRVQGLEKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPRSHPIRVE 247

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GLS L+LVDIAAGGWHSTALT  GEVY WGRGEHGRLGFGD DKSS+MVP KV LLAGED
Sbjct: 248 GLSDLSLVDIAAGGWHSTALTIQGEVYAWGRGEHGRLGFGD-DKSSRMVPLKVELLAGED 306

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           IVQVSCGGTHSVALTRDG +FS+GRGDHGRLGYGRK+TTGQPM V I++P P+      D
Sbjct: 307 IVQVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKLTTGQPMGVDIDLPPPKTR-SSRD 365

Query: 348 RRWIAKLVACGGRHTLAIVEW 368
            +W AK VACGGRHTLAIV W
Sbjct: 366 GQWQAKYVACGGRHTLAIVVW 386


>gi|115476524|ref|NP_001061858.1| Os08g0430700 [Oryza sativa Japonica Group]
 gi|38175475|dbj|BAD01172.1| putative UVB-resistance protein UVR8 [Oryza sativa Japonica Group]
 gi|113623827|dbj|BAF23772.1| Os08g0430700 [Oryza sativa Japonica Group]
 gi|215734996|dbj|BAG95718.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640598|gb|EEE68730.1| hypothetical protein OsJ_27407 [Oryza sativa Japonica Group]
          Length = 395

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/381 (75%), Positives = 315/381 (82%), Gaps = 18/381 (4%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           T+++AWGSGEDGQLG+G  EE +W   V AL+   V +VVAGSRNSLAIC DG+      
Sbjct: 11  TAVLAWGSGEDGQLGMGGYEEEDWARGVAALDALAVSAVVAGSRNSLAICADGRLFTWGW 70

Query: 59  -----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                      TKTE+ P+ V+AL+   IVQAAIGGWHCLAVDD+GRAYAWGGNEYGQCG
Sbjct: 71  NQRGTLGHPPETKTESSPAPVDALAGVSIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQCG 130

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           EE ERK+D  R LRRDI IPQ CAPKL VRQVAAGGTHSVVLT++GHVWTWGQPWPPGDI
Sbjct: 131 EEAERKEDGTRALRRDIPIPQGCAPKLKVRQVAAGGTHSVVLTQDGHVWTWGQPWPPGDI 190

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           KQIS PVRVQGLE VK+IAVGAFHNLAL EDG LWAWGNNEYGQLGTGDTQPRSQPI V+
Sbjct: 191 KQISTPVRVQGLENVKVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDTQPRSQPIRVE 250

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GLS L+LVDIAAGGWHSTALT +GEVY WGRGEHGRLGFGD DKSS MVPQKV LLAGED
Sbjct: 251 GLSDLSLVDIAAGGWHSTALTKEGEVYAWGRGEHGRLGFGD-DKSSHMVPQKVELLAGED 309

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           I+QVSCGGTHSVALTRDG +FS+GRGDHGRLGYGRKVTTG PMEVPI++P P  +G    
Sbjct: 310 IIQVSCGGTHSVALTRDGRMFSYGRGDHGRLGYGRKVTTGHPMEVPIDLPPPGTSGGDSG 369

Query: 348 RRWIAKLVACGGRHTLAIVEW 368
            +W A+ VACGGRHTLAI  W
Sbjct: 370 GQWQARYVACGGRHTLAIATW 390


>gi|326506178|dbj|BAJ86407.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 389

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/381 (73%), Positives = 308/381 (80%), Gaps = 19/381 (4%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
            +++AWGSGEDGQLG+G  +E++    + AL+ Y V +VVAGSRNSLAICDDG       
Sbjct: 8   VAVLAWGSGEDGQLGMGGCDEKDRARCICALDAYAVSAVVAGSRNSLAICDDGSLFTWGW 67

Query: 58  ----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     +TKTE+ P+ V+AL   KIVQAAIGGWHCLAVDD+GRAYAWGGNEYGQCG
Sbjct: 68  NQRGTLGHPPETKTESSPAHVDALVGVKIVQAAIGGWHCLAVDDKGRAYAWGGNEYGQCG 127

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           EEPERK+D  R LRRDI IPQRCA KL VRQVAAGGTHSVVLT+EGHVWTWGQPWPPGDI
Sbjct: 128 EEPERKEDGTRALRRDIPIPQRCALKLKVRQVAAGGTHSVVLTQEGHVWTWGQPWPPGDI 187

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           K IS PVRVQGLEQV +IAVGAFHNLAL  D  LWAWGNNEYGQLG GDTQPRSQPI V+
Sbjct: 188 KNISTPVRVQGLEQVSMIAVGAFHNLALSVDRILWAWGNNEYGQLGIGDTQPRSQPIRVE 247

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GLS L+LVDIAAGGWHS ALT +GEVY WGRGEHGRLGFGD DKSS MVP +V LLAGED
Sbjct: 248 GLSNLSLVDIAAGGWHSAALTKEGEVYAWGRGEHGRLGFGD-DKSSHMVPLQVQLLAGED 306

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           IVQVSCGGTHSV LT DG IFS+GRGDHGRLG GRKVTTG PMEVPIN+P P+ +    +
Sbjct: 307 IVQVSCGGTHSVVLTSDGRIFSYGRGDHGRLGDGRKVTTGHPMEVPINLPPPKTSTSS-E 365

Query: 348 RRWIAKLVACGGRHTLAIVEW 368
             W A  VACGGRHTLAIV W
Sbjct: 366 GLWQANYVACGGRHTLAIVTW 386


>gi|414870472|tpg|DAA49029.1| TPA: putative regulator of chromosome condensation (RCC1) family
           protein [Zea mays]
          Length = 469

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/421 (68%), Positives = 313/421 (74%), Gaps = 61/421 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           ++  GSGEDGQLG+G NEE++W   V+AL  Y V +VVAGSRNSLAIC+DG         
Sbjct: 46  VLYRGSGEDGQLGMGGNEEKDWAHCVEALGSYAVTAVVAGSRNSLAICEDGRLFTWGWNQ 105

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG---------- 99
                   KTKTE+ P  V+AL+  KIVQAAIGGWHCLAVDD G AYAWG          
Sbjct: 106 RGTLGHPPKTKTESSPGPVHALAGLKIVQAAIGGWHCLAVDDNGHAYAWGRGTRFPAFSV 165

Query: 100 --GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
             GNEYGQCGEEPERK+D  R LRRDI  PQRCAPKL VRQVAAGGTHSVVLT+EGHVWT
Sbjct: 166 TGGNEYGQCGEEPERKEDGTRALRRDIPTPQRCAPKLKVRQVAAGGTHSVVLTQEGHVWT 225

Query: 158 WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           WGQPWPPGDIKQIS PVRVQGLE+V++IAVGAFHNLAL EDG LWAWGNNEYGQLGTGDT
Sbjct: 226 WGQPWPPGDIKQISTPVRVQGLEKVRVIAVGAFHNLALTEDGILWAWGNNEYGQLGTGDT 285

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE------------------------- 252
           QPRS PI V+GLS L+LVDIAAGGWHSTALT  GE                         
Sbjct: 286 QPRSHPIRVEGLSDLSLVDIAAGGWHSTALTIQGEINSLPCYLFRACFKDVQIIKYQKYT 345

Query: 253 -----VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
                VY WGRGEHGRLGFGD DKSS+MVP KV LLAGEDIVQVSCGGTHSVALTRDG +
Sbjct: 346 YYTMKVYAWGRGEHGRLGFGD-DKSSRMVPLKVELLAGEDIVQVSCGGTHSVALTRDGRM 404

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           FS+GRGDHGRLGYGRK+TTGQPM V I++P P+      D +W AK VACGGRHTLAIV 
Sbjct: 405 FSYGRGDHGRLGYGRKLTTGQPMGVDIDLPPPKTR-SSRDGQWQAKYVACGGRHTLAIVV 463

Query: 368 W 368
           W
Sbjct: 464 W 464


>gi|302808359|ref|XP_002985874.1| hypothetical protein SELMODRAFT_182077 [Selaginella moellendorffii]
 gi|300146381|gb|EFJ13051.1| hypothetical protein SELMODRAFT_182077 [Selaginella moellendorffii]
          Length = 394

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/394 (69%), Positives = 308/394 (78%), Gaps = 32/394 (8%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MAS T ++AWG+GEDGQLG+GN ++++ VCVV AL  + V SVVAGSRNSLAIC+DG+  
Sbjct: 1   MASRTCVLAWGAGEDGQLGLGNLQDKDSVCVVDALRDHNVVSVVAGSRNSLAICEDGRLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTE+ PSQV AL+N KIVQAAIGGWHCLAVD++GR YAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTESTPSQVKALANVKIVQAAIGGWHCLAVDEEGRTYAWGGNEY 120

Query: 104 GQCGEEPERKDDT----GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
           GQC EE + K+       ++L RDI IPQRCAP+L VRQ+ AGGTHSVVLT EGHVWTWG
Sbjct: 121 GQCAEEQQTKEQQNKGESKVLHRDITIPQRCAPRLCVRQLTAGGTHSVVLTEEGHVWTWG 180

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           QPWPPGDIKQISVPVRVQGLE V +IAVGAFHNLAL + G +WAWGNNEYGQLGTGDTQP
Sbjct: 181 QPWPPGDIKQISVPVRVQGLENVTMIAVGAFHNLALVQHGEVWAWGNNEYGQLGTGDTQP 240

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P+PV+GL+GL LVDIAAGGWHS ALT DG VYGWGRGEHGRLGFGD DKSSKM+PQK
Sbjct: 241 RSSPVPVKGLTGLVLVDIAAGGWHSMALTPDGAVYGWGRGEHGRLGFGD-DKSSKMLPQK 299

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI----- 334
           V+LLAGE +VQVSCGGTHSVA T  G +FSFGRGDHGRLGY   VTTG P+EVP+     
Sbjct: 300 VHLLAGEPVVQVSCGGTHSVAATISGRMFSFGRGDHGRLGYSGAVTTGHPVEVPVSLHHY 359

Query: 335 ---NIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              NI +   A       W+ KLVACGGRH LA+
Sbjct: 360 SRHNIVSEDEANGSTG--WVVKLVACGGRHALAV 391


>gi|302806118|ref|XP_002984809.1| hypothetical protein SELMODRAFT_234638 [Selaginella moellendorffii]
 gi|300147395|gb|EFJ14059.1| hypothetical protein SELMODRAFT_234638 [Selaginella moellendorffii]
          Length = 391

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/393 (68%), Positives = 309/393 (78%), Gaps = 33/393 (8%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MAS T ++AWG+GEDGQLG+GN ++++ VCVV AL  + V SVVAGSRNSLAIC+DG+  
Sbjct: 1   MASRTCVLAWGAGEDGQLGLGNLQDKDSVCVVDALRDHNVVSVVAGSRNSLAICEDGRLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTE+ PSQV AL+N KIVQAAIGGWHCLAVD++GR YAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTESTPSQVKALANVKIVQAAIGGWHCLAVDEEGRTYAWGGNEY 120

Query: 104 GQCGEEPERKDDT----GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
           GQC EE + K+       ++L RDI IPQRCAP+L V   AAGGTHSVVLT EGHVWTWG
Sbjct: 121 GQCAEEQQTKEQQNKGESKVLHRDITIPQRCAPRLCV---AAGGTHSVVLTEEGHVWTWG 177

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           QPWPPGDIKQISVPVRVQGLE V +IAVGAFHNLAL + G +WAWGNNEYGQLGTGDTQP
Sbjct: 178 QPWPPGDIKQISVPVRVQGLENVTMIAVGAFHNLALVQHGEVWAWGNNEYGQLGTGDTQP 237

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P+PV+GL+GL LVDIAAGGWHS ALT DG VYGWGRGEHGRLGFGD DKSSKM+PQK
Sbjct: 238 RSSPVPVKGLTGLVLVDIAAGGWHSMALTPDGAVYGWGRGEHGRLGFGD-DKSSKMLPQK 296

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP-- 337
           V+LLAGE +VQVSCGGTHSVA T  G +FSFGRGDHGRLGYG  VTTG P+EVP+++   
Sbjct: 297 VHLLAGEPVVQVSCGGTHSVAATISGRMFSFGRGDHGRLGYGGAVTTGHPVEVPVSLHHY 356

Query: 338 -----APRNAGDGVDRRWIAKLVACGGRHTLAI 365
                   +  +G   RW+ KLVACGGRH LA+
Sbjct: 357 SRHNIVSEDEANG-STRWVVKLVACGGRHALAV 388


>gi|79295482|ref|NP_001030623.1| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
 gi|332640300|gb|AEE73821.1| regulator of chromosome condensation domain-containing protein
           [Arabidopsis thaliana]
          Length = 310

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/308 (82%), Positives = 268/308 (87%), Gaps = 18/308 (5%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           M + TSIIAWGSGEDGQLGIG NEE+EW CVV+ALEPY VRSVV+GSRNSLAICDDG   
Sbjct: 1   MVTATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         +TKTENIPS+V AL+N KI QAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+ GR +RRDIVIP+RCAPKL VRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEP-LKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPWP 179

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE V+LIAVGAFHNLAL+EDG L AWGNNEYGQLGTGDTQP S P
Sbjct: 180 PGDIKQISVPVRVQGLENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHP 239

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           +PVQGL  LTLVDIAAGGWHSTALTD GEVYGWGRGEHGRLG GDNDKSSKMVPQKVNLL
Sbjct: 240 VPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLL 299

Query: 284 AGEDIVQV 291
           A EDI+QV
Sbjct: 300 AEEDIIQV 307


>gi|6957714|gb|AAF32458.1| hypothetical protein [Arabidopsis thaliana]
          Length = 314

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 199/365 (54%), Positives = 229/365 (62%), Gaps = 76/365 (20%)

Query: 14  EDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSN 73
           EDGQLGIG NEE+EW CVV+ALEPY VRSVV+GSRNSLAIC                   
Sbjct: 19  EDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAIC------------------- 59

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP- 132
                            D G  + WG N+ G  G +PE K +          IP R    
Sbjct: 60  -----------------DDGTMFTWGWNQRGTLGHQPETKTEN---------IPSRVKAL 93

Query: 133 -KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFH 191
             + + Q A GG H + +  +G  + WG+  P   +  +       GLE V+LIAVGAFH
Sbjct: 94  ANVKITQAAIGGWHCLAVDDQGRAYAWGKRMPFHTLSDL------LGLENVRLIAVGAFH 147

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           NLAL+EDG L AWGNNEYGQLGTGDTQP S P+PVQGL  LTLVDIAAGGWHSTALTD G
Sbjct: 148 NLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKG 207

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EVYGWGRGEHGRLG GDNDKSSKMVPQKVNLLA EDI+Q                   FG
Sbjct: 208 EVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQ-------------------FG 248

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR----RWIAKLVACGGRHTLAIVE 367
           RGDHGRLGYGRKVTTGQP+E+PI IP P  + +  D     +W AK +ACGGRHTLAIVE
Sbjct: 249 RGDHGRLGYGRKVTTGQPLELPIKIPPPEGSFNHTDEEEEGKWSAKSIACGGRHTLAIVE 308

Query: 368 WQTEE 372
           W++++
Sbjct: 309 WKSDD 313



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 49/171 (28%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           ++AWG+ E GQLG G+ +       V+ L+   +  + AG  +S A+ D G+        
Sbjct: 157 LLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGE 216

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                       ++ +P +VN L+   I+Q   G        D GR        YG    
Sbjct: 217 HGRLGLGDNDKSSKMVPQKVNLLAEEDIIQFGRG--------DHGRL------GYG---- 258

Query: 109 EPERKDDTGRILRRDIVIP----------QRCAPKLIVRQVAAGGTHSVVL 149
              RK  TG+ L   I IP          +    K   + +A GG H++ +
Sbjct: 259 ---RKVTTGQPLELPIKIPPPEGSFNHTDEEEEGKWSAKSIACGGRHTLAI 306


>gi|28416625|gb|AAO42843.1| At3g02510 [Arabidopsis thaliana]
          Length = 182

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/181 (77%), Positives = 151/181 (83%), Gaps = 18/181 (9%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           M + TSIIAWGSGEDGQLGIG NEE+EW CVV+ALEPY VRSVV+GSRNSLAICDDG   
Sbjct: 1   MVTATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         +TKTENIPS+V AL+N KI QAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEP  KD+ GR +RRDIVIP+RCAPKL VRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct: 121 GQCGEEP-LKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPWP 179

Query: 164 P 164
           P
Sbjct: 180 P 180



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 12/147 (8%)

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG-TGDTQPRSQPIPVQGLSGL 232
           V+ LE   V+ +  G+ ++LA+ +DG ++ WG N+ G LG   +T+  + P  V+ L+ +
Sbjct: 32  VEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANV 91

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG-------FGDNDKSSKMVPQKVNLLAG 285
            +   A GGWH  A+ D G  Y WG  E+G+ G        G   +   ++P++      
Sbjct: 92  KITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDIVIPKR--CAPK 149

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGR 312
             + QV+ GGTHSV LTR+GH++++G+
Sbjct: 150 LTVRQVAAGGTHSVVLTREGHVWTWGQ 176



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 30/180 (16%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           AWG  E GQ G         G    ++            VR V +G  +S+ +  +G ++
Sbjct: 9   AWGSGEDGQLG--------IGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query: 157 TWG---------QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWG 205
           TWG         QP    + K  ++P RV+ L  VK+   A+G +H LA+ + G  +AWG
Sbjct: 61  TWGWNQRGTLGHQP----ETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWG 116

Query: 206 NNEYGQLG-------TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            NEYGQ G        G    R   IP +    LT+  +AAGG HS  LT +G V+ WG+
Sbjct: 117 GNEYGQCGEEPLKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQ 176



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           AWG+ E GQLG G  + +     V+ L   ++  + +G  +S A+ DDG ++ WG  + G
Sbjct: 9   AWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWNQRG 68

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YG 321
            LG     K+   +P +V  LA   I Q + GG H +A+   G  +++G  ++G+ G   
Sbjct: 69  TLGHQPETKTEN-IPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 127

Query: 322 RKVTTGQPMEVPINIP---APRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            K   G+P+   I IP   AP+            + VA GG H++ + 
Sbjct: 128 LKDEMGRPVRRDIVIPKRCAPKLT---------VRQVAAGGTHSVVLT 166



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +  WG GE G+LG G N++  K     V  L    +  V  G  +S+A+  DG +F++G 
Sbjct: 7   IIAWGSGEDGQLGIGTNEE--KEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGW 64

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              G LG+       QP     NIP+   A   V         A GG H LA+
Sbjct: 65  NQRGTLGH-------QPETKTENIPSRVKALANVK----ITQAAIGGWHCLAV 106


>gi|307110133|gb|EFN58370.1| hypothetical protein CHLNCDRAFT_20698, partial [Chlorella
           variabilis]
          Length = 379

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/334 (43%), Positives = 188/334 (56%), Gaps = 28/334 (8%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + AWG  EDGQLG+   +    V     +    V + +  SRN+LAI  DG   T     
Sbjct: 1   VFAWGVNEDGQLGLERVQRPAAVGADNVIVAKVVEACLGDSRNTLAIGADGNVITWGWNA 60

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                      +  P +V  L    I QAAIGGWH LA+DD G+ +AWGGNEYGQC   P
Sbjct: 61  RGTLGHGHREPQGKPQRVAGLQGVHIKQAAIGGWHVLALDDTGQCWAWGGNEYGQC--LP 118

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI 170
             K        RDI+ P +C   + V+QVAAGG HS+ LT  G +W WG+PW    +   
Sbjct: 119 RDK--------RDILAPVKCLEGIAVKQVAAGGMHSLALTETGEIWMWGEPWGDFSMTIN 170

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             P R+        ++ GAFHNLAL   G  + WG N++G LG G T   + P  V GL 
Sbjct: 171 RAPRRIDTTGDFVDVSCGAFHNLALNAAGECFTWGINDFGMLGNGTTSYATCPEKVVGLE 230

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+ + D++AGGWHS A++ +GEVY WGRGE+GRLG GD   SSK+ PQKV  L G  +V+
Sbjct: 231 GVFIADVSAGGWHSMAISAEGEVYVWGRGEYGRLGLGDRTGSSKLRPQKVKTLEGHRVVE 290

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRL--GYGR 322
            SCGGTH++ +T +G  F +GRG  GR   GY R
Sbjct: 291 GSCGGTHTMVVTDEGRCFIWGRGAFGRCVGGYAR 324



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST-ALTDDGEVYGWGRG 259
           ++AWG NE GQLG    Q R   +    +    +V+   G   +T A+  DG V  WG  
Sbjct: 1   VFAWGVNEDGQLGLERVQ-RPAAVGADNVIVAKVVEACLGDSRNTLAIGADGNVITWGWN 59

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             G LG G  +   K  PQ+V  L G  I Q + GG H +AL   G  +++G  ++G+  
Sbjct: 60  ARGTLGHGHREPQGK--PQRVAGLQGVHIKQAAIGGWHVLALDDTGQCWAWGGNEYGQC- 116

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                    P +   +I AP    +G+      K VA GG H+LA+ E
Sbjct: 117 --------LPRD-KRDILAPVKCLEGI----AVKQVAAGGMHSLALTE 151


>gi|384251643|gb|EIE25120.1| RCC1/BLIP-II [Coccomyxa subellipsoidea C-169]
          Length = 567

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 162/399 (40%), Positives = 205/399 (51%), Gaps = 64/399 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP----------YKVRSVVAGSRNSLAICDD 56
           +  WG  EDGQL +   +E E V   K LE           +    +V GSR ++AI  D
Sbjct: 51  VFGWGVNEDGQLAL---DEAENVMAPKVLEALLGTRFQGRDFLKSPLVCGSRCTVAIDAD 107

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G+  +                E  P +V AL   +I Q + GGWHCLA+D  G  YAWGG
Sbjct: 108 GQVLSWGWNDRATLGHSHREHERKPRRVAALRGMEITQVSTGGWHCLALDSAGLVYAWGG 167

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           NEYGQC  E            RD+V P  C P L V+QVAAGG HS VLT  G VWTWG+
Sbjct: 168 NEYGQCNVEWNV---------RDVVQPTPCVPGLRVKQVAAGGMHSCVLTDTGEVWTWGE 218

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
           PW    +K    P +V+G   +  +A GAFHNLAL   G + AWG N++GQLG G T   
Sbjct: 219 PWGDFSMKVDRHPKKVEGAIDIVKLACGAFHNLALNAAGEVLAWGINDFGQLGNGSTFYE 278

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDG-------------EVYGWGRGEHGRLGFG 267
           + P  V GL  + + DI AGGWHS ALT +G              V+ WGRGE+GRLG G
Sbjct: 279 TSPTKVLGLEDVRVADIVAGGWHSLALTTEGGAHPQIECAKAGKMVFVWGRGEYGRLGLG 338

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
           D   SSK+    V     +     SCGGTH++ LT +G I+++GRG  GRLG G +    
Sbjct: 339 DRSGSSKLRATGVAFKEPD----ASCGGTHTMVLTSEGRIYTWGRGSFGRLGTGTEKDYL 394

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            P+EV +          G   RW     A GGRH+L + 
Sbjct: 395 SPVEVFL---------PGGPERWRVICCASGGRHSLVLA 424



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 9/127 (7%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL-------VDIAAGGWHSTALTDD 250
           +  ++ WG NE GQL   + +    P  ++ L G            +  G   + A+  D
Sbjct: 48  EAVVFGWGVNEDGQLALDEAENVMAPKVLEALLGTRFQGRDFLKSPLVCGSRCTVAIDAD 107

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+V  WG  +   LG    +   K  P++V  L G +I QVS GG H +AL   G ++++
Sbjct: 108 GQVLSWGWNDRATLGHSHREHERK--PRRVAALRGMEITQVSTGGWHCLALDSAGLVYAW 165

Query: 311 GRGDHGR 317
           G  ++G+
Sbjct: 166 GGNEYGQ 172


>gi|388517305|gb|AFK46714.1| unknown [Lotus japonicus]
          Length = 198

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 132/160 (82%), Gaps = 17/160 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           M S + IIAWGSGEDGQLGIGNNE++EWVCVV+AL    VRSVVAGSRNSLAICDDGK  
Sbjct: 1   MDSNSPIIAWGSGEDGQLGIGNNEDKEWVCVVQALASRSVRSVVAGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTENIPSQV ALS+ KIVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTENIPSQVKALSHVKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           GQCGEEPERKDDTGR LRRDIVIPQRCAPKL+VRQVAA G
Sbjct: 121 GQCGEEPERKDDTGRPLRRDIVIPQRCAPKLVVRQVAAEG 160



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           +  +  + AWG+ E GQLG G+ + +     VQ L+  ++  + AG  +S A+ DDG+++
Sbjct: 1   MDSNSPIIAWGSGEDGQLGIGNNEDKEWVCVVQALASRSVRSVVAGSRNSLAICDDGKLF 60

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG  + G LG     K+   +P +V  L+   IVQ + GG H +A+   G  +++G  +
Sbjct: 61  TWGWNQRGTLGHPPETKTEN-IPSQVKALSHVKIVQAAIGGWHCLAVDDQGRAYAWGGNE 119

Query: 315 HGRLGY--GRKVTTGQPMEVPINIP 337
           +G+ G    RK  TG+P+   I IP
Sbjct: 120 YGQCGEEPERKDDTGRPLRRDIVIP 144



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 83/186 (44%), Gaps = 28/186 (15%)

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           +D      AWG  E GQ G         G    ++ V   +      VR V AG  +S+ 
Sbjct: 1   MDSNSPIIAWGSGEDGQLG--------IGNNEDKEWVCVVQALASRSVRSVVAGSRNSLA 52

Query: 149 LTREGHVWTWGQPWP-------PGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDG 199
           +  +G ++TWG  W        P + K  ++P +V+ L  VK++  A+G +H LA+ + G
Sbjct: 53  ICDDGKLFTWG--WNQRGTLGHPPETKTENIPSQVKALSHVKIVQAAIGGWHCLAVDDQG 110

Query: 200 ALWAWGNNEYGQLG--------TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
             +AWG NEYGQ G        TG    R   IP +    L +  +AA G     L   G
Sbjct: 111 RAYAWGGNEYGQCGEEPERKDDTGRPLRRDIVIPQRCAPKLVVRQVAAEGLTQWYLHVKG 170

Query: 252 EVYGWG 257
            +YG G
Sbjct: 171 -MYGHG 175


>gi|302855135|ref|XP_002959067.1| hypothetical protein VOLCADRAFT_108456 [Volvox carteri f.
           nagariensis]
 gi|300255564|gb|EFJ39861.1| hypothetical protein VOLCADRAFT_108456 [Volvox carteri f.
           nagariensis]
          Length = 942

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/315 (43%), Positives = 173/315 (54%), Gaps = 40/315 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALE----------PYKVRSVVAGSRNSLAI--- 53
           +  WG  EDGQLG+   EERE V   K +E           +    +VAGSRN++A+   
Sbjct: 253 VFGWGVSEDGQLGV---EERENVVAPKVVEALLGVQISGRSFCRTPLVAGSRNTMALDAA 309

Query: 54  -------------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           G    E  P ++ AL   +IVQ AIGGWHCLA+ D+G  +AWGG
Sbjct: 310 GQVWSFGWNDRGTLGHGHRDVETKPKRIPALKGIRIVQVAIGGWHCLALSDRGTMFAWGG 369

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           NEYGQCG     + D    +  D+ +     P   VRQV+AGG HS+ L  +G VW WG+
Sbjct: 370 NEYGQCGSVLPGQRDITEPMPVDLGL----GPSQRVRQVSAGGMHSLALLEDGMVWQWGE 425

Query: 161 PWPPGDIKQISV----PVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
            W  GD     V    PV V   E  V  ++ GAFHNLAL   G + +WG N+YGQLG G
Sbjct: 426 NW--GDFSMRPVRTPRPVAVHPDEGGVAAVSCGAFHNLALTAQGRVLSWGMNDYGQLGNG 483

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
            T   + P PV  + G+ + DIAAGGWHS AL+  GEV+ WGRGE+GRLG GD   SSK+
Sbjct: 484 STTYATTPRPVLDMEGVVVADIAAGGWHSCALSSAGEVWVWGRGEYGRLGLGDRSGSSKL 543

Query: 276 VPQKVNLLAGEDIVQ 290
            PQKV  L    +VQ
Sbjct: 544 RPQKVRGLESHVVVQ 558



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 123/250 (49%), Gaps = 22/250 (8%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           + WG +E GQ G E ER++     +   ++  Q          + AG  +++ L   G V
Sbjct: 254 FGWGVSEDGQLGVE-ERENVVAPKVVEALLGVQISGRSFCRTPLVAGSRNTMALDAAGQV 312

Query: 156 WTWGQPWPP------GDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNN 207
           W++G  W        G     + P R+  L+ ++++  A+G +H LAL + G ++AWG N
Sbjct: 313 WSFG--WNDRGTLGHGHRDVETKPKRIPALKGIRIVQVAIGGWHCLALSDRGTMFAWGGN 370

Query: 208 EYGQLGTGDTQPR--SQPIPVQ-GLSGLTLV-DIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           EYGQ G+     R  ++P+PV  GL     V  ++AGG HS AL +DG V+ WG      
Sbjct: 371 EYGQCGSVLPGQRDITEPMPVDLGLGPSQRVRQVSAGGMHSLALLEDGMVWQWGEN---- 426

Query: 264 LGFGDNDKSSKMVPQKVNLLAGED-IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
             +GD        P+ V +   E  +  VSCG  H++ALT  G + S+G  D+G+LG G 
Sbjct: 427 --WGDFSMRPVRTPRPVAVHPDEGGVAAVSCGAFHNLALTAQGRVLSWGMNDYGQLGNGS 484

Query: 323 KVTTGQPMEV 332
                 P  V
Sbjct: 485 TTYATTPRPV 494



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL-------VDIAAGGWHSTALTDD 250
           +  ++ WG +E GQLG  + +    P  V+ L G+ +         + AG  ++ AL   
Sbjct: 250 EAVVFGWGVSEDGQLGVEERENVVAPKVVEALLGVQISGRSFCRTPLVAGSRNTMALDAA 309

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+V+ +G  + G LG G  D  +K  P+++  L G  IVQV+ GG H +AL+  G +F++
Sbjct: 310 GQVWSFGWNDRGTLGHGHRDVETK--PKRIPALKGIRIVQVAIGGWHCLALSDRGTMFAW 367

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+ G    V  GQ     I  P P + G G  +R   + V+ GG H+LA++E
Sbjct: 368 GGNEYGQCG---SVLPGQ---RDITEPMPVDLGLGPSQR--VRQVSAGGMHSLALLE 416


>gi|255089166|ref|XP_002506505.1| predicted protein [Micromonas sp. RCC299]
 gi|226521777|gb|ACO67763.1| predicted protein [Micromonas sp. RCC299]
          Length = 401

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/374 (38%), Positives = 193/374 (51%), Gaps = 51/374 (13%)

Query: 41  RSVVAGSRNSLAICDDGKTKT---------------ENIPS--QVNALSNTKIVQAAIGG 83
           ++++AGSRNS A+   G   T               E IP    V AL  + +  A++GG
Sbjct: 1   KAILAGSRNSAALASSGALYTWGWNSHDTLGHDVDDEWIPRPRAVAALDPSDVACASLGG 60

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC---------APKL 134
           WH  A D+ GR +AWGGNEYGQ G +       G  +   + +P+           A +L
Sbjct: 61  WHVCAADNDGRLFAWGGNEYGQAGVDTGTAGQ-GVHVSLHLSVPELVPFPAPDGLNANRL 119

Query: 135 IVRQVAAGGTHSV-VLTREGHVWTWGQPWPPGDIKQIS-VPVRVQGLEQVKLIAVGAFHN 192
            + QVA GG  S  V+ R G V+TWGQ    G  K+ +  PVRV G++ V  +A G FH 
Sbjct: 120 QITQVACGGMCSFAVVGRTGEVYTWGQT--VGSEKEPARSPVRVPGIKGVTTLAAGMFHA 177

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LALQEDG +++WGN +YGQLG G       P  V+ LS   +  +AAGGWHS A+T  G 
Sbjct: 178 LALQEDGRVFSWGNGDYGQLGLGRPGNEDTPTEVEALSRAGVRSVAAGGWHSAAVTAGGV 237

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-GED-------------IVQVSCGGTHS 298
            Y WGRGE+GRLG GD D + K  P ++ L + G D             IV+ + GGTHS
Sbjct: 238 CYVWGRGEYGRLGLGDGDCADKQRPVELTLGSWGGDNREGGGRGGSVPRIVEAALGGTHS 297

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             L   G ++SFGR   GRLG   +  +G+    P  +  P   G G    W    V  G
Sbjct: 298 CLLDESGRVYSFGRNSLGRLG---RAVSGKWSGDPAPVHFPPAPGGGA---WRVTSVCAG 351

Query: 359 GRHTLAIVEWQTEE 372
           GRHT+A    +++E
Sbjct: 352 GRHTMATARVRSKE 365



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 32/134 (23%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------------ 54
           + +WG+G+ GQLG+G     +    V+AL    VRSV AG  +S A+             
Sbjct: 186 VFSWGNGDYGQLGLGRPGNEDTPTEVEALSRAGVRSVAAGGWHSAAVTAGGVCYVWGRGE 245

Query: 55  ------DDGKTKTENIPSQVN--------------ALSNTKIVQAAIGGWHCLAVDDQGR 94
                  DG    +  P ++                 S  +IV+AA+GG H   +D+ GR
Sbjct: 246 YGRLGLGDGDCADKQRPVELTLGSWGGDNREGGGRGGSVPRIVEAALGGTHSCLLDESGR 305

Query: 95  AYAWGGNEYGQCGE 108
            Y++G N  G+ G 
Sbjct: 306 VYSFGRNSLGRLGR 319


>gi|387193358|gb|AFJ68699.1| hypothetical protein NGATSA_3056200, partial [Nannochloropsis
           gaditana CCMP526]
          Length = 511

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/396 (32%), Positives = 203/396 (51%), Gaps = 53/396 (13%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC---------- 54
           + + +WG GEDGQ G G+  ++E    V+ L+   V  +  GS +++ +           
Sbjct: 6   SMLYSWGRGEDGQCGNGSTNDQEMPMPVEGLKHLTVVQIACGSGHTVVLTEDKDVWSWGR 65

Query: 55  -DDGKTKTEN-----IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
            DDG+    +     +P  V+AL+   I Q   G +H  A+ D G  + WGG  YG+ G 
Sbjct: 66  GDDGRLGHADNHWKYVPHLVSALTGKSIKQVTCGSYHTAAISDTGALWTWGGGMYGKLGH 125

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWGQP--- 161
             E            +  P  C  +      V Q+A G  H+  L   G V+ WG     
Sbjct: 126 GNE------------VGHPAPCRVEAFIGREVEQIACGSRHTAALLAGGEVYCWGDRENG 173

Query: 162 -WPPGDIKQIS-VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               G+  +   +P +++ L+ VK+  IA   FH  A+ +DGALW+WG  ++G+LG G+ 
Sbjct: 174 VCGIGEAAEHQYLPKKLEALKGVKITQIAACGFHTAAITQDGALWSWGEGKFGRLGQGNE 233

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           + +  P  V+GL G+ +  +A GG+HS  +T+DG+V  +G GEHG+LG G  DK+++ VP
Sbjct: 234 KNQVTPCCVEGLQGVRVKQVACGGFHSACVTEDGDVLTFGGGEHGQLGHG--DKTNRTVP 291

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             V  L G  IVQV+CG +H+V L+ DG +F+FG GDHG+LG+G    +  P  V     
Sbjct: 292 CLVKALEGAGIVQVTCGWSHTVTLSEDGKVFTFGNGDHGKLGHGANAKSALPKLV----- 346

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                 + +    +AK VA    HT+A+   + E++
Sbjct: 347 ------ESLANMKVAK-VASYNEHTVALCHAEQEQA 375



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 14/171 (8%)

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + D  L++WG  E GQ G G T  +  P+PV+GL  LT+V IA G  H+  LT+D +V+ 
Sbjct: 3   RHDSMLYSWGRGEDGQCGNGSTNDQEMPMPVEGLKHLTVVQIACGSGHTVVLTEDKDVWS 62

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WGRG+ GRLG  DN    K VP  V+ L G+ I QV+CG  H+ A++  G ++++G G +
Sbjct: 63  WGRGDDGRLGHADN--HWKYVPHLVSALTGKSIKQVTCGSYHTAAISDTGALWTWGGGMY 120

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           G+LG+G +V    P  V   I      G  V++      +ACG RHT A++
Sbjct: 121 GKLGHGNEVGHPAPCRVEAFI------GREVEQ------IACGSRHTAALL 159



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 37/273 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           ++ T ++  WG G  G+LG GN       C V+A    +V  +  GSR++ A+   G+  
Sbjct: 106 ISDTGALWTWGGGMYGKLGHGNEVGHPAPCRVEAFIGREVEQIACGSRHTAALLAGGEVY 165

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           + + +P ++ AL   KI Q A  G+H  A+   G  ++WG  ++
Sbjct: 166 CWGDRENGVCGIGEAAEHQYLPKKLEALKGVKITQIAACGFHTAAITQDGALWSWGEGKF 225

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWG- 159
           G+ G+  E+             +   C   L    V+QVA GG HS  +T +G V T+G 
Sbjct: 226 GRLGQGNEKNQ-----------VTPCCVEGLQGVRVKQVACGGFHSACVTEDGDVLTFGG 274

Query: 160 ---QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                   GD    +VP  V+ LE   ++ V  G  H + L EDG ++ +GN ++G+LG 
Sbjct: 275 GEHGQLGHGDKTNRTVPCLVKALEGAGIVQVTCGWSHTVTLSEDGKVFTFGNGDHGKLGH 334

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G     + P  V+ L+ + +  +A+   H+ AL
Sbjct: 335 GANAKSALPKLVESLANMKVAKVASYNEHTVAL 367


>gi|412985305|emb|CCO20330.1| predicted protein [Bathycoccus prasinos]
          Length = 534

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/432 (31%), Positives = 206/432 (47%), Gaps = 67/432 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +  +  + +WG      LG+G     + V   K+      +  V     +     D   +
Sbjct: 97  LTKSKELYSWGWNSHDTLGLGGERAND-VNEEKSDVKKNNKEFVKTPTKATYFAHDTTEE 155

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG------------- 107
            E +  + +    ++IV+ A+GGWH LA+D  GR +AWGGNEYGQC              
Sbjct: 156 LEQLHIK-DEFVASEIVRVALGGWHALAIDQFGRVHAWGGNEYGQCATEKKKIEEKFEVE 214

Query: 108 -----------------EEPERK-----DDTGRI---LRRDIVIPQR-CAPKLIVR--QV 139
                             + ERK     DD G     +   I IP    +PK +++  +V
Sbjct: 215 TIAATTTTRDTTTAAIARDEERKRGVVIDDRGFANTSISTPITIPLDWKSPKTLIKAKRV 274

Query: 140 AAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG 199
           A GG  S  +T +G V++WG P   G       P +V+ L     IA G+FH LAL +DG
Sbjct: 275 ACGGMSSFAVTVDGDVYSWGCP-VGGVGPNTYHPKKVENLRDCCEIAAGSFHVLALAKDG 333

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            +++WG+ EYGQLG   T   + P  ++ L+   +V I AGGWHS  +T  G++  WGRG
Sbjct: 334 TVYSWGHGEYGQLGHQKTGNEATPRAIETLNRKGVVKIRAGGWHSACITAGGQLLTWGRG 393

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGE----------------DIVQVSCGGTHSVALTR 303
           E+ RLG GD+D + K+ P +V   +                   IV  S GG+H++ALT 
Sbjct: 394 EYARLGMGDDDCADKITPTEVKFPSPTDADDDDDDESKRHQRYKIVDASLGGSHTIALTS 453

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            G + S+GR   GRLG   +V  G    +P  +  P       +R+WI   ++CGGRH +
Sbjct: 454 QGQLLSWGRNSLGRLG---RVVNGPHSGIPGEVKFPPLPN---ERKWICVKLSCGGRHNM 507

Query: 364 AI-VEWQTEESK 374
           A+ VE +T+E +
Sbjct: 508 ALCVETKTKEER 519



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 54/216 (25%)

Query: 43  VVAGSRNSLAICDDG----------------KTKTENIPSQVNALSNTKIVQAAIGGWHC 86
           + AGS + LA+  DG                KT  E  P  +  L+   +V+   GGWH 
Sbjct: 319 IAAGSFHVLALAKDGTVYSWGHGEYGQLGHQKTGNEATPRAIETLNRKGVVKIRAGGWHS 378

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP------------QRCAPKL 134
             +   G+   WG  EY + G   +  D   +I   ++  P             +   + 
Sbjct: 379 ACITAGGQLLTWGRGEYARLGMGDD--DCADKITPTEVKFPSPTDADDDDDDESKRHQRY 436

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ------------PWP--PGDIKQISVPVRVQGLE 180
            +   + GG+H++ LT +G + +WG+            P    PG++K   +P   + + 
Sbjct: 437 KIVDASLGGSHTIALTSQGQLLSWGRNSLGRLGRVVNGPHSGIPGEVKFPPLPNERKWI- 495

Query: 181 QVKLIAVGAFHNLAL--------QEDGALWAWGNNE 208
            VKL + G  HN+AL        + + AL A+ NN+
Sbjct: 496 CVKL-SCGGRHNMALCVETKTKEERERALRAYFNND 530


>gi|325183095|emb|CCA17552.1| regulator of chromosome condensation (RCC1)like protein putative
           [Albugo laibachii Nc14]
          Length = 545

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 187/354 (52%), Gaps = 41/354 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG GEDGQLG+G+  ++    +V+AL+  +   +  GS +++ + DDGK  T    
Sbjct: 2   TVYTWGRGEDGQLGLGDTSDQYHPILVEALQDRQTVQISCGSGHTVVLTDDGKVYTWGRG 61

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       + +P  V  L + K+ Q   G +H  AV   G  Y WGG  YG+ G  
Sbjct: 62  DDGRLGHGDNGWKFVPRLVEDLRDKKVRQVTCGSYHTAAVTVSGELYTWGGGMYGKLGHG 121

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
            E    T  ++             L VRQVA G  H+VVL     V+TWG         G
Sbjct: 122 NENGHSTPSLVES--------IKGLYVRQVACGSRHTVVLLENQDVYTWGDKENGVSGHG 173

Query: 166 DIK--QISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           D    Q S P  V  L ++ +  + A  FH  AL E+G ++ +G  ++G+LG      R+
Sbjct: 174 DTSGHQYS-PYCVSELVEINIKQISACGFHTAALSENGQVFTFGEGKFGRLG--HNSERN 230

Query: 222 QPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           QP+   +  L G  +  +A GG+H+ A+T+ G V+ WG GEHG+LG GD  K ++++P +
Sbjct: 231 QPVAKCIDALIGKRIKQVACGGFHTAAVTESGHVFTWGGGEHGQLGHGD--KVNQIIPTR 288

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPME 331
           V  L  ++I+Q++CG +H+VALT  G +F++G GDHG+LG+    KVT  + +E
Sbjct: 289 VESLIDKNIIQLTCGWSHTVALTDKGEVFTWGNGDHGKLGHNDTNKVTEPKLIE 342



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 14/170 (8%)

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            ++ WG  E GQLG GDT  +  PI V+ L     V I+ G  H+  LTDDG+VY WGRG
Sbjct: 2   TVYTWGRGEDGQLGLGDTSDQYHPILVEALQDRQTVQISCGSGHTVVLTDDGKVYTWGRG 61

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           + GRLG GDN    K VP+ V  L  + + QV+CG  H+ A+T  G ++++G G +G+LG
Sbjct: 62  DDGRLGHGDN--GWKFVPRLVEDLRDKKVRQVTCGSYHTAAVTVSGELYTWGGGMYGKLG 119

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           +G +     P  V           + +   ++ + VACG RHT+ ++E Q
Sbjct: 120 HGNENGHSTPSLV-----------ESIKGLYV-RQVACGSRHTVVLLENQ 157



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 129/267 (48%), Gaps = 33/267 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +  WG G  G+LG GN        +V++++   VR V  GSR+++ + ++    T     
Sbjct: 107 LYTWGGGMYGKLGHGNENGHSTPSLVESIKGLYVRQVACGSRHTVVLLENQDVYTWGDKE 166

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P  V+ L    I Q +  G+H  A+ + G+ + +G  ++G+ G  
Sbjct: 167 NGVSGHGDTSGHQYSPYCVSELVEINIKQISACGFHTAALSENGQVFTFGEGKFGRLGHN 226

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
            ER     + +  D +I +R      ++QVA GG H+  +T  GHV+TWG     Q    
Sbjct: 227 SERNQPVAKCI--DALIGKR------IKQVACGGFHTAAVTESGHVFTWGGGEHGQLGHG 278

Query: 165 GDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             + QI +P RV+ L    +I +  G  H +AL + G ++ WGN ++G+LG  DT   ++
Sbjct: 279 DKVNQI-IPTRVESLIDKNIIQLTCGWSHTVALTDKGEVFTWGNGDHGKLGHNDTNKVTE 337

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTD 249
           P  ++  +   ++ +A+   H+ AL +
Sbjct: 338 PKLIETFNSKRVISVASYNEHTVALVN 364



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 56/204 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++    +  +G G+ G+L  G+N ER         +P             +A C      
Sbjct: 206 LSENGQVFTFGEGKFGRL--GHNSERN--------QP-------------VAKC------ 236

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                  ++AL   +I Q A GG+H  AV + G  + WGG E+GQ G             
Sbjct: 237 -------IDALIGKRIKQVACGGFHTAAVTESGHVFTWGGGEHGQLGHGD---------- 279

Query: 121 RRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
           + + +IP R    LI   + Q+  G +H+V LT +G V+TWG          D  +++ P
Sbjct: 280 KVNQIIPTR-VESLIDKNIIQLTCGWSHTVALTDKGEVFTWGNGDHGKLGHNDTNKVTEP 338

Query: 174 VRVQGLEQVKLIAVGAF--HNLAL 195
             ++     ++I+V ++  H +AL
Sbjct: 339 KLIETFNSKRVISVASYNEHTVAL 362


>gi|301106605|ref|XP_002902385.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262098259|gb|EEY56311.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 545

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 196/387 (50%), Gaps = 49/387 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ +WG GEDGQLG+G+  ++     + AL   ++  +  GS +++ + ++G+  T    
Sbjct: 2   TVYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTEEGEVYTWGRG 61

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       + +P  V  L    I Q   G +H  AV   G  Y WGG  YG+ G  
Sbjct: 62  DDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHG 121

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
            E    T  ++             + VRQVA G  H+VVL     V+TWG         G
Sbjct: 122 NETGHSTPYLVE--------TLKSMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHG 173

Query: 166 DIK-QISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           D +    +P  V+ L    ++ + A  FH  AL E G ++ +G  ++G+LG      R+Q
Sbjct: 174 DTEGHQYLPCPVEELRGKSIVQISACGFHTAALSEFGEVFTFGEGKFGRLG--HNSERNQ 231

Query: 223 PIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           P+   V  L+G  +  +A GG+H+ A+T+ GEVY WG GEHG+LG GD  K +K VP +V
Sbjct: 232 PVARFVDALAGKRVKQVACGGFHTAAVTETGEVYTWGGGEHGQLGHGD--KVNKTVPTRV 289

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L  + ++Q++CG +H+V LT  G ++++G GDHG+LG+             + +P P 
Sbjct: 290 ESLLEKLVLQITCGWSHTVTLTDTGEVYTWGNGDHGKLGHNDT--------AKVTLPKPV 341

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +  DG  +R I+  VA    HT+A+V+
Sbjct: 342 DVLDG--KRVIS--VASYNEHTVALVD 364


>gi|348687440|gb|EGZ27254.1| hypothetical protein PHYSODRAFT_358246 [Phytophthora sojae]
          Length = 545

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 197/387 (50%), Gaps = 49/387 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ +WG GEDGQLG+G+  ++     + AL   ++  +  GS +++ + D+G+  T    
Sbjct: 2   TVYSWGRGEDGQLGLGDTSDQHRPVPIDALAERRIVQIACGSGHTVVLTDEGEVYTWGRG 61

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       + +P  V  L    I Q   G +H  AV   G  Y WGG  YG+ G  
Sbjct: 62  DDGRLGHGDNGWKFVPRLVEELRGKNIRQVTCGSYHTAAVTVSGDLYTWGGGMYGKLGHG 121

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
            E    T  ++             + VRQVA G  H+VVL     V+TWG         G
Sbjct: 122 NETGHSTPFLVE--------TLKGMQVRQVACGSRHTVVLLENKDVYTWGDKENGVSGHG 173

Query: 166 DIK-QISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           D +    +P  V+ L    ++ + A  FH  AL E G ++ +G  ++G+LG      R+Q
Sbjct: 174 DTEGHQYLPCPVEELRGKNIVQISACGFHTAALSEFGEVFTFGEGKFGRLG--HNSERNQ 231

Query: 223 PIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           P+   V+ L+G  +  +A GG+H+ A+T+ GEVY WG GEHG+LG GD  K +K VP +V
Sbjct: 232 PVARFVEALAGKRVKQVACGGFHTAAVTETGEVYTWGGGEHGQLGHGD--KVNKTVPTRV 289

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L  + +VQ++CG +H+VALT  G ++++G GDHG+LG+             + +P   
Sbjct: 290 ESLVEKLVVQITCGWSHTVALTDTGEVYTWGNGDHGKLGHNDT--------TKVTLPKLV 341

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +  +G  +R I+  VA    HT+A+V+
Sbjct: 342 DVLEG--KRVIS--VASYNEHTVALVD 364


>gi|145354694|ref|XP_001421613.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581851|gb|ABO99906.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 390

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/402 (35%), Positives = 198/402 (49%), Gaps = 53/402 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV--RSVVAGSRNSLAICDDGKTKTEN 63
           ++ AWG GEDGQLG+  ++ R       A  P +   R+   GSRNS+     G+     
Sbjct: 1   ALFAWGCGEDGQLGL--DDARSTARERCAASPRRATPRAPACGSRNSMCATTTGELYAWG 58

Query: 64  IPS---------QVNAL----------------SNTKIVQAAIGGWHCLAVDDQGRAYAW 98
             S         + +AL                   ++  AA GGWH L VD  G  + W
Sbjct: 59  WNSHRALSFGWQECDALFVDAPRRSRLEVGEGGRRLEVAAAASGGWHALCVDADGAVWGW 118

Query: 99  GGNEYGQCGE-EPERKDDTGRILRRD------IVIPQRCAP-KLIVRQVAAGGTHSVVLT 150
           GGNEY Q G  + E +  +  I  RD      ++ P R  P    V  V+ GG  S  L 
Sbjct: 119 GGNEYAQAGRADAEAEARSAAIPDRDWAPARALISPARMIPLPFAVSAVSCGGMSSFALL 178

Query: 151 REGHVWTWGQPWPPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEY 209
           R+G V+ WG      + +    P  +  L++ V  IA G+FH L    +G + ++GN  Y
Sbjct: 179 RDGRVFEWGLT--SEEEEPREEPAHLPTLDKHVVEIAAGSFHLLMRTRNGEVLSYGNGMY 236

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG G      +P  ++    + +  IAAGGWHS A+T  G +Y WGRGE+GRLG GD+
Sbjct: 237 GQLGLGAFSAADKPRVIETFGRVGVAKIAAGGWHSAAVTAGGLLYTWGRGEYGRLGHGDD 296

Query: 270 DKSSKMVPQKVNLLAGED----IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            K  K+VPQ V+L  GED    I  V+ GG+HS A+T +GH+ S+GR   GRL  GR V+
Sbjct: 297 CK-DKVVPQLVDL--GEDESNFIADVALGGSHSCAITCEGHVLSWGRNTLGRL--GRVVS 351

Query: 326 TGQP-MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
              P    P  +  P   G    R W    ++CGGRHTLA+ 
Sbjct: 352 DPSPSCGHPGRVVFPPLPG---GRFWRVDKISCGGRHTLAVA 390


>gi|156365518|ref|XP_001626692.1| predicted protein [Nematostella vectensis]
 gi|156213578|gb|EDO34592.1| predicted protein [Nematostella vectensis]
          Length = 1056

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 185/400 (46%), Gaps = 42/400 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDDG----- 57
           +  WG   +GQLG+G  E+ E++   + LE  +    VR V  G  ++  +C DG     
Sbjct: 1   MFCWGKCSEGQLGVGETEQ-EFISTPRLLENLEFSSNVREVSCGWNHTAFLCKDGTVYTC 59

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                    + K+   P  V+A+    I +   G  H +AV DQG  +AWG N YGQ G 
Sbjct: 60  GSNEFGQLGQEKSHTNPESVHAIETFTITKVTCGKAHTVAVSDQGLVFAWGDNSYGQIGL 119

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI- 167
             + K+    I +       +   K+ V Q+A G  HS+ LT  GH++ WG     G + 
Sbjct: 120 GSKVKEKVQTIPKM-----LKGLAKMSVVQIACGCNHSMALTISGHLFCWGDN-SSGQLG 173

Query: 168 -----KQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                  +S P  V  L  V   LI+ G  H+ AL   GAL+ WG NEYGQLG  DT  R
Sbjct: 174 IGKTHSSMSEPAPVLSLNGVPFMLISAGGAHSFALSSSGALFGWGKNEYGQLGVHDTTDR 233

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  ++ L    +  ++ G  H+  LT DG V+ +G G  G+L  G N    +  P+KV
Sbjct: 234 PLPTLLKSLRSQGVCYVSCGEKHTAVLTSDGGVFTFGCGTSGQL--GHNSNHHEYTPRKV 291

Query: 281 NLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV------P 333
             L G  + Q++CG  H++AL    G +++FGRG  G+LG G       PM         
Sbjct: 292 FELMGSVVTQIACGRAHTLALVPSSGRVYTFGRGGDGQLGLGVTNNCNSPMTAKGPWLRS 351

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            NI +     DG    +  + +  GG H  A+     +E+
Sbjct: 352 NNIKSMLPEADGDSVVYTVRRIDAGGDHCFAMASSYGDET 391



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 32/208 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S+ ++  WG  E GQLG+ +  +R    ++K+L    V  V  G +++  +  DG   
Sbjct: 208 LSSSGALFGWGKNEYGQLGVHDTTDRPLPTLLKSLRSQGVCYVSCGEKHTAVLTSDGGVF 267

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  + + Q A G  H LA V   GR Y +G    
Sbjct: 268 TFGCGTSGQLGHNSNHHEYTPRKVFELMGSVVTQIACGRAHTLALVPSSGRVYTFGRGGD 327

Query: 104 GQCGEEPERKDDT-----GRILRRDIV---IPQRCAPKLI--VRQVAAGGTHSVVLTREG 153
           GQ G       ++     G  LR + +   +P+     ++  VR++ AGG H   +    
Sbjct: 328 GQLGLGVTNNCNSPMTAKGPWLRSNNIKSMLPEADGDSVVYTVRRIDAGGDHCFAMASSY 387

Query: 154 HVWTWGQ-----PWPPGDIKQISVPVRV 176
              T G      P P   I  +SVPV +
Sbjct: 388 GDETDGPEDMRLPRPSQSILHLSVPVTM 415


>gi|118398943|ref|XP_001031798.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila]
 gi|89286132|gb|EAR84135.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila SB210]
          Length = 443

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/406 (30%), Positives = 193/406 (47%), Gaps = 47/406 (11%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           T + +WG G  GQLG+ N         ++ L   K++ V AG   S+A+  +G+  +   
Sbjct: 49  TIVYSWGYGGFGQLGLQNENNYYTPTEIEVLTDKKIKKVEAGKSISMALTHNGEVYSWGK 108

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                             P ++  L   KI Q + G +H  AV + G  Y WG  E+G+ 
Sbjct: 109 NKGGILGHEDRLSFNMTQPERIEKLLGKKIKQISCGQFHMAAVTEDGEVYTWGNKEFGKL 168

Query: 107 GEEPERKDDTGRILRR---------DIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHV 155
           G E E K +    ++R         D ++PQ+      +  +QVA G   +VVL+ +G V
Sbjct: 169 GHEEELKQEQKIKIKRGNLSHDYLQDSMLPQKIESLGNIKAKQVACGIQFTVVLSEDGKV 228

Query: 156 WTWG--QPWPPG---DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           +T+G  Q    G   D   ++ P  ++ L  +  I+ G     A+ + G L+ WGNN  G
Sbjct: 229 YTFGYNQYGSLGYVSDQNSVTTPQLIKDLNDIVKISAGYSFCAAITKQGKLYTWGNNRNG 288

Query: 211 QLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           QLG   +  +++P  V G  S  ++VD++ G     ALT  G++Y WG G  G+LG G+ 
Sbjct: 289 QLGNSQSLYQTKPSIVTGFGSQNSIVDVSCGDNFIAALTQQGQLYTWGFGGDGQLGHGN- 347

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            KS    P+ V     + I++++CGG+H+  +T D  ++ FGRG  G+LG G+ V +   
Sbjct: 348 -KSDLYAPRHVEF--KQKIIKIACGGSHAAFITEDNQLYQFGRGSEGQLGIGQNVASEAS 404

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV-EWQTEESK 374
           +    N+         VD       V CGG HT+AI  E+Q    K
Sbjct: 405 IRSTPNLVQYFKGKQVVD-------VTCGGEHTIAITQEFQKPNKK 443


>gi|326509355|dbj|BAJ91594.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518534|dbj|BAJ88296.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 442

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 190/358 (53%), Gaps = 39/358 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G++E+R    V+ + +  +V SV+ G+ +++A  DD    
Sbjct: 36  LLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTSFDVPRVTSVICGADHTIAYSDDEMQL 95

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +     P  + AL   KI Q A G  HCL V   G+ ++WG N+ 
Sbjct: 96  YSWGWGDFGRLGHGNSSDVFNPQPIVALQGMKIKQIACGDSHCLTVTFNGQVHSWGRNQN 155

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHV--WTWG 159
           GQ G         G    +D ++PQ+      + V+ +AAG  H+  +T  G +  W WG
Sbjct: 156 GQLG--------LGN--NQDSLLPQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWG 205

Query: 160 QPWPPG--DIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
           +    G  D    SVP +V  +E  ++ L+A G  H++++   GAL+ +G ++YGQLG G
Sbjct: 206 RYGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHG 265

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSK 274
           D Q    P  ++ L  + +  I+ G  H+ A+ +DG++YGWG  + G++G  DN D  S 
Sbjct: 266 DFQDHLVPRKLEALKDVPISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGVEDNVDHCS- 324

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             P +VN    + IVQV+CG  H++ALT + +IFS+GRG  G+LG+G  +    P  +
Sbjct: 325 --PVEVNFPDEQKIVQVACGWRHTLALTENKNIFSWGRGASGQLGHGEIIDRNTPKMI 380



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 31/300 (10%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           ++  + G  H  A+       +WG  E GQ G   + +D     +     +P+       
Sbjct: 23  VILISAGANHSAALLSGQMVCSWGRGEDGQLGH-GDSEDRPVPTVLTSFDVPR------- 74

Query: 136 VRQVAAGGTHSVVLTREG---HVWTWGQPWPPG-----DIKQISVPVRVQGLEQVKLIAV 187
           V  V  G  H++  + +    + W WG     G     D+      V +QG+ ++K IA 
Sbjct: 75  VTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNSSDVFNPQPIVALQGM-KIKQIAC 133

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H L +  +G + +WG N+ GQLG G+ Q    P  ++   G+ +  IAAG  H+TA+
Sbjct: 134 GDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVKMIAAGAEHTTAI 193

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+ G++YGWG G +G LG  D D  S  VP+KV+ + GE +V V+CG  HSV+++  G +
Sbjct: 194 TEGGDLYGWGWGRYGNLGLSDRDDRS--VPEKVSSVEGEKMVLVACGWRHSVSVSSSGAL 251

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +++G   +G+LG+G      Q   VP  + A ++             ++ G RHT+A+ E
Sbjct: 252 YTYGWSKYGQLGHGDF----QDHLVPRKLEALKDV--------PISQISGGWRHTMAVAE 299



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 23/250 (9%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D  +P+  AP+  V  ++AG  HS  L     V +WG+        GD +   VP  +  
Sbjct: 12  DEAVPE--APEQSVILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTS 69

Query: 179 LE--QVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            +  +V  +  GA H +A  +D   L++WG  ++G+LG G++     P P+  L G+ + 
Sbjct: 70  FDVPRVTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNSSDVFNPQPIVALQGMKIK 129

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H   +T +G+V+ WGR ++G+LG G+N  S  ++PQK+    G  +  ++ G 
Sbjct: 130 QIACGDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDS--LLPQKIKAFEGVCVKMIAAGA 187

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+ A+T  G ++ +G G +G LG   +     P +V  ++   +             LV
Sbjct: 188 EHTTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEKVS-SVEGEKMV-----------LV 235

Query: 356 ACGGRHTLAI 365
           ACG RH++++
Sbjct: 236 ACGWRHSVSV 245



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 15/189 (7%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           + V LI+ GA H+ AL     + +WG  E GQLG GD++ R  P  +       +  +  
Sbjct: 21  QSVILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTSFDVPRVTSVIC 80

Query: 240 GGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           G  H+ A +DD  ++Y WG G+ GRLG G++  S    PQ +  L G  I Q++CG +H 
Sbjct: 81  GADHTIAYSDDEMQLYSWGWGDFGRLGHGNS--SDVFNPQPIVALQGMKIKQIACGDSHC 138

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           + +T +G + S+GR  +G+LG G    +  P ++         A +GV      K++A G
Sbjct: 139 LTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKI--------KAFEGV----CVKMIAAG 186

Query: 359 GRHTLAIVE 367
             HT AI E
Sbjct: 187 AEHTTAITE 195



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 32/247 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+GNN++      +KA E   V+ + AG+ ++ AI + G         
Sbjct: 147 VHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWGR 206

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                       ++P +V+++   K+V  A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 207 YGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHGD 266

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPG 165
            +     R L     +P        + Q++ G  H++ +  +G ++ WG     Q     
Sbjct: 267 FQDHLVPRKLEALKDVP--------ISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGVED 318

Query: 166 DIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           ++   S PV V   ++ K++  A G  H LAL E+  +++WG    GQLG G+   R+ P
Sbjct: 319 NVDHCS-PVEVNFPDEQKIVQVACGWRHTLALTENKNIFSWGRGASGQLGHGEIIDRNTP 377

Query: 224 IPVQGLS 230
             +  LS
Sbjct: 378 KMIDALS 384


>gi|326511771|dbj|BAJ92030.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 442

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 190/358 (53%), Gaps = 39/358 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G++E+R    V+ + +  +V SV+ G+ +++A  DD    
Sbjct: 36  LLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTSFDVPRVTSVICGADHTIAYSDDEMQL 95

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +     P  + AL   KI Q A G  HCL V   G+ ++WG N+ 
Sbjct: 96  YSWGWGDFGRLGHGNSSDVFNPQPIVALQGMKIKQIACGDSHCLTVTFNGQVHSWGRNQN 155

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHV--WTWG 159
           GQ G         G    +D ++PQ+      + V+ +AAG  H+  +T  G +  W WG
Sbjct: 156 GQLG--------LGN--NQDSLLPQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWG 205

Query: 160 QPWPPG--DIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
           +    G  D    SVP +V  +E  ++ L+A G  H++++   GAL+ +G ++YGQLG G
Sbjct: 206 RYGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHG 265

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSK 274
           D Q    P  ++ L  + +  I+ G  H+ A+ +DG++YGWG  + G++G  DN D  S 
Sbjct: 266 DFQDHLVPRKLEALKDVPISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGVEDNVDHCS- 324

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             P +VN    + IVQV+CG  H++ALT + +IFS+GRG  G+LG+G  +    P  +
Sbjct: 325 --PVEVNFPDEQKIVQVACGWRHTLALTENKNIFSWGRGASGQLGHGEIIDRNTPKMI 380



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 31/300 (10%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           ++  + G  H  A+       +WG  E GQ G           +L     +P+       
Sbjct: 23  VILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTS-FDVPR------- 74

Query: 136 VRQVAAGGTHSVVLTREG---HVWTWGQPWPPG-----DIKQISVPVRVQGLEQVKLIAV 187
           V  V  G  H++  + +    + W WG     G     D+      V +QG+ ++K IA 
Sbjct: 75  VTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNSSDVFNPQPIVALQGM-KIKQIAC 133

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H L +  +G + +WG N+ GQLG G+ Q    P  ++   G+ +  IAAG  H+TA+
Sbjct: 134 GDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVKMIAAGAEHTTAI 193

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+ G++YGWG G +G LG  D D  S  VP+KV+ + GE +V V+CG  HSV+++  G +
Sbjct: 194 TEGGDLYGWGWGRYGNLGLSDRDDRS--VPEKVSSVEGEKMVLVACGWRHSVSVSSSGAL 251

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +++G   +G+LG+G      Q   VP  + A ++             ++ G RHT+A+ E
Sbjct: 252 YTYGWSKYGQLGHGDF----QDHLVPRKLEALKDV--------PISQISGGWRHTMAVAE 299



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 23/250 (9%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D  +P+  AP+  V  ++AG  HS  L     V +WG+        GD +   VP  +  
Sbjct: 12  DEAVPE--APEQSVILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTS 69

Query: 179 LE--QVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            +  +V  +  GA H +A  +D   L++WG  ++G+LG G++     P P+  L G+ + 
Sbjct: 70  FDVPRVTSVICGADHTIAYSDDEMQLYSWGWGDFGRLGHGNSSDVFNPQPIVALQGMKIK 129

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H   +T +G+V+ WGR ++G+LG G+N  S  ++PQK+    G  +  ++ G 
Sbjct: 130 QIACGDSHCLTVTFNGQVHSWGRNQNGQLGLGNNQDS--LLPQKIKAFEGVCVKMIAAGA 187

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+ A+T  G ++ +G G +G LG   +     P +V  ++   +             LV
Sbjct: 188 EHTTAITEGGDLYGWGWGRYGNLGLSDRDDRSVPEKVS-SVEGEKMV-----------LV 235

Query: 356 ACGGRHTLAI 365
           ACG RH++++
Sbjct: 236 ACGWRHSVSV 245



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 15/189 (7%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           + V LI+ GA H+ AL     + +WG  E GQLG GD++ R  P  +       +  +  
Sbjct: 21  QSVILISAGANHSAALLSGQMVCSWGRGEDGQLGHGDSEDRPVPTVLTSFDVPRVTSVIC 80

Query: 240 GGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           G  H+ A +DD  ++Y WG G+ GRLG G++  S    PQ +  L G  I Q++CG +H 
Sbjct: 81  GADHTIAYSDDEMQLYSWGWGDFGRLGHGNS--SDVFNPQPIVALQGMKIKQIACGDSHC 138

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           + +T +G + S+GR  +G+LG G    +  P ++         A +GV      K++A G
Sbjct: 139 LTVTFNGQVHSWGRNQNGQLGLGNNQDSLLPQKI--------KAFEGV----CVKMIAAG 186

Query: 359 GRHTLAIVE 367
             HT AI E
Sbjct: 187 AEHTTAITE 195



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 32/247 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+GNN++      +KA E   V+ + AG+ ++ AI + G         
Sbjct: 147 VHSWGRNQNGQLGLGNNQDSLLPQKIKAFEGVCVKMIAAGAEHTTAITEGGDLYGWGWGR 206

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                       ++P +V+++   K+V  A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 207 YGNLGLSDRDDRSVPEKVSSVEGEKMVLVACGWRHSVSVSSSGALYTYGWSKYGQLGHGD 266

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPG 165
            +     R L     +P        + Q++ G  H++ +  +G ++ WG     Q     
Sbjct: 267 FQDHLVPRKLEALKDVP--------ISQISGGWRHTMAVAEDGKLYGWGWNKFGQVGVED 318

Query: 166 DIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           ++   S PV V   ++ K++  A G  H LAL E+  +++WG    GQLG G+   R+ P
Sbjct: 319 NVDHCS-PVEVNFPDEQKIVQVACGWRHTLALTENKNIFSWGRGASGQLGHGEIIDRNTP 377

Query: 224 IPVQGLS 230
             +  LS
Sbjct: 378 KMIDALS 384


>gi|168008673|ref|XP_001757031.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691902|gb|EDQ78262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 420

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 179/353 (50%), Gaps = 37/353 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + +WG GEDGQLG G+ EER    V+ AL+  ++ S+  G+ ++ A  +           
Sbjct: 35  VCSWGRGEDGQLGHGDAEERHLPLVISALDDCEISSITCGADHTTARSESTRTVYSWGWG 94

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +    IP  +  L   +I Q A G  HCLA+   G  ++WG N+ GQ G  
Sbjct: 95  DFGRLGHGNSSDLFIPRAIKGLKGLEIKQIACGDSHCLAITGDGEVHSWGRNQNGQLGLG 154

Query: 110 PERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                        D+++P + A    + V+ +AAG  H+  +T  G ++ WG        
Sbjct: 155 HTE----------DVLVPNKVAAFEGIAVKMLAAGAEHTAAVTESGKLYGWGWGRYGNLG 204

Query: 164 PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            GD     VP  V  +  E++ L+A G  H +A+   G L+ +G ++YGQLG GD +   
Sbjct: 205 LGDRNDRLVPGEVAAVPGEKMNLVACGWRHTIAVANSGNLYTFGWSKYGQLGHGDFEDHL 264

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  VQ L   T+  ++ G  H+ AL +DGE+YGWG  + G++G G+ D  +   P+ + 
Sbjct: 265 VPHQVQALKNKTIQAVSGGWRHTVALDEDGELYGWGWNKFGQVGCGNTDDHNS--PKLIT 322

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +  E + +V+CG  H+VA+T  G+++S+GRG  G+LG+G  V    P  + +
Sbjct: 323 GIVNEKVTRVTCGWRHTVAITDRGNVYSWGRGTSGQLGHGDAVDRCVPKRIEL 375



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 29/300 (9%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++  + G  H +A+       +WG  E GQ G         G    R + +        
Sbjct: 15  RVISVSAGASHTVALLSGDLVCSWGRGEDGQLGH--------GDAEERHLPLVISALDDC 66

Query: 135 IVRQVAAGGTHSVVL---TREGHVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIAV 187
            +  +  G  H+      TR  + W WG       G+   + +P  ++GL+  ++K IA 
Sbjct: 67  EISSITCGADHTTARSESTRTVYSWGWGDFGRLGHGNSSDLFIPRAIKGLKGLEIKQIAC 126

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+  DG + +WG N+ GQLG G T+    P  V    G+ +  +AAG  H+ A+
Sbjct: 127 GDSHCLAITGDGEVHSWGRNQNGQLGLGHTEDVLVPNKVAAFEGIAVKMLAAGAEHTAAV 186

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+ G++YGWG G +G LG G  D++ ++VP +V  + GE +  V+CG  H++A+   G++
Sbjct: 187 TESGKLYGWGWGRYGNLGLG--DRNDRLVPGEVAAVPGEKMNLVACGWRHTIAVANSGNL 244

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           ++FG   +G+LG+G      +   VP  + A +N           + V+ G RHT+A+ E
Sbjct: 245 YTFGWSKYGQLGHGDF----EDHLVPHQVQALKNK--------TIQAVSGGWRHTVALDE 292



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 21/242 (8%)

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLI 185
           P+  V  V+AG +H+V L     V +WG+        GD ++  +P+ +  L+  ++  I
Sbjct: 12  PRRRVISVSAGASHTVALLSGDLVCSWGRGEDGQLGHGDAEERHLPLVISALDDCEISSI 71

Query: 186 AVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
             GA H  A  E    +++WG  ++G+LG G++     P  ++GL GL +  IA G  H 
Sbjct: 72  TCGADHTTARSESTRTVYSWGWGDFGRLGHGNSSDLFIPRAIKGLKGLEIKQIACGDSHC 131

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            A+T DGEV+ WGR ++G+LG G  +    +VP KV    G  +  ++ G  H+ A+T  
Sbjct: 132 LAITGDGEVHSWGRNQNGQLGLGHTEDV--LVPNKVAAFEGIAVKMLAAGAEHTAAVTES 189

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++ +G G +G LG G +     P EV   +P  +             LVACG RHT+A
Sbjct: 190 GKLYGWGWGRYGNLGLGDRNDRLVPGEVAA-VPGEK-----------MNLVACGWRHTIA 237

Query: 365 IV 366
           + 
Sbjct: 238 VA 239



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 16/124 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           +A++ ++  +G  + GQLG G+ E+      V+AL+   +++V  G R+++A+ +DG+  
Sbjct: 238 VANSGNLYTFGWSKYGQLGHGDFEDHLVPHQVQALKNKTIQAVSGGWRHTVALDEDGELY 297

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T   N P  +  + N K+ +   G  H +A+ D+G  Y+WG    G
Sbjct: 298 GWGWNKFGQVGCGNTDDHNSPKLITGIVNEKVTRVTCGWRHTVAITDRGNVYSWGRGTSG 357

Query: 105 QCGE 108
           Q G 
Sbjct: 358 QLGH 361


>gi|303288445|ref|XP_003063511.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455343|gb|EEH52647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 458

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 192/434 (44%), Gaps = 87/434 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEER---------------------EWVCVVKALEPYKVRSVV 44
           ++  WG GEDGQLG+ ++                        E V   K   P K  ++ 
Sbjct: 13  TLFVWGCGEDGQLGLASSPAAPHASALDWAVPTPTPLKLPNGERVASAKTTAPNK--ALC 70

Query: 45  AGSRNSLAICDDG---------------KTKTENI-----------PSQVNALSNTKIVQ 78
           AGSRNS  +   G                T+ E +           P +V   S   + +
Sbjct: 71  AGSRNSACVTRAGGLYAWGWNSHDTLGLDTEDEFVTTPRAVEALRDPEKVPGFSPRGVAR 130

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-----APK 133
           A +GGWH L VD  G AYAWGGNEYGQ G +       G  +   + +P R         
Sbjct: 131 AHLGGWHALCVDFDGAAYAWGGNEYGQAGVDCGVAGH-GVHVSLHLSVPTRLPFGGPGGN 189

Query: 134 LIVRQVAAGGTHSVVLTR-EGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
           + ++QVA GG HS  +    G V+ WGQ     +      P +++G+  V  +A GAFH 
Sbjct: 190 VKIKQVACGGMHSFAVADGTGEVYQWGQI-AGSEKAPARAPAKLRGIRGVVALAAGAFHA 248

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL--------VDIAAGGWHS 244
           +ALQ+DG + +WGN +YGQLG G       P+ V+ L  + +        V + AGGWHS
Sbjct: 249 IALQDDGRVLSWGNGDYGQLGLGLPGNEDAPVVVEALRRVLIHSHCRAGVVAVRAGGWHS 308

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN--LLAGEDIVQVSCGGTHSVALT 302
            A+T     Y WGRGE+GRLG GD D + K  P +V   +  G  +V  + GGTH+  L 
Sbjct: 309 AAITAGRVCYLWGRGEYGRLGQGD-DCADKQWPVEVAEVMSEGTRVVDAALGGTHTCLLD 367

Query: 303 RDGHIFSFGRGDHGRLG------------YGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            DG + SFGR   GRLG            +     TG P  V    P            W
Sbjct: 368 EDGVVTSFGRNSLGRLGRVADGKARSIHWFAYDRWTGTPGRVNFPPPPGGGG-------W 420

Query: 351 IAKLVACGGRHTLA 364
               +  GGRHTLA
Sbjct: 421 RCTGIVAGGRHTLA 434



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 37/199 (18%)

Query: 201 LWAWGNNEYGQLGTGDT--QPRSQ--------PIPVQGLSGLTLVD---------IAAGG 241
           L+ WG  E GQLG   +   P +         P P++  +G  +           + AG 
Sbjct: 14  LFVWGCGEDGQLGLASSPAAPHASALDWAVPTPTPLKLPNGERVASAKTTAPNKALCAGS 73

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDK---SSKMV-----PQKVNLLAGEDIVQVSC 293
            +S  +T  G +Y WG   H  LG    D+   + + V     P+KV   +   + +   
Sbjct: 74  RNSACVTRAGGLYAWGWNSHDTLGLDTEDEFVTTPRAVEALRDPEKVPGFSPRGVARAHL 133

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGY-----GRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           GG H++ +  DG  +++G  ++G+ G      G  V     + VP  +P     G G + 
Sbjct: 134 GGWHALCVDFDGAAYAWGGNEYGQAGVDCGVAGHGVHVSLHLSVPTRLP---FGGPGGNV 190

Query: 349 RWIAKLVACGGRHTLAIVE 367
           +   K VACGG H+ A+ +
Sbjct: 191 K--IKQVACGGMHSFAVAD 207


>gi|444915391|ref|ZP_21235524.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713468|gb|ELW54366.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 743

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 176/353 (49%), Gaps = 42/353 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWGS   G+ G G    R     V+ L      +V AG  +SLA        
Sbjct: 361 VGSDGTVWAWGSNFSGERGEGTTNNRASPVQVQGLGGGV--AVAAGFNHSLAARSDGSVW 418

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T+    P QV  LS   +V  A G  H LA+   G  +AWG N YG
Sbjct: 419 AWGSNDSGQLGDGTTRNSTSPVQVQGLSG--VVAVAAGFDHSLALRSDGSVWAWGSNAYG 476

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q GE        G    R  ++P +    ++   VAAG  HS+ +  +G VWTWG     
Sbjct: 477 QLGE--------GTTTNR--LVPVQVLSGVVA--VAAGSNHSLAVRSDGTVWTWGSNLYG 524

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G      VPV+VQGL  V  +A G+FH+LA+  DG++WAWG+N  G+LG G T  R
Sbjct: 525 QLGDGTTSNRLVPVQVQGLSGVAAVAAGSFHSLAVHSDGSVWAWGSNSSGELGDGTTSNR 584

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  V GLSG   V +AAGG+HS  +  DG V+ WG    G LG  D   +S+ VP +V
Sbjct: 585 LVPGRVPGLSGG--VAVAAGGFHSLVVRSDGTVWTWGSNSFGELG--DGTTTSRSVPVQV 640

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             L+G  +V V  G +HS+A+  DG ++++G   +G+LG G       P++VP
Sbjct: 641 QGLSG--VVAVDAGNSHSLAVRSDGTVWTWGYNSYGQLGDGTTTRRSVPVQVP 691



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 171/347 (49%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWGS  DGQLG G    R     V+ L    V SV AGS  SLA+            
Sbjct: 116 TVWAWGSNSDGQLGDGTTTMRLTPVRVQGLS--GVVSVAAGSSYSLAVRSDGTVWAWGSN 173

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T    +P QV  LS   +V  A G  H LAV   G  +AWG N  GQ G+ 
Sbjct: 174 FSGQLGDGTTSNRLVPVQVPGLSG--VVSVAAGSSHSLAVLSDGSVWAWGANSSGQLGD- 230

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G  + R  ++P +      V  VAAG  HS+ +  +G VWTWG         G
Sbjct: 231 -------GTKINR--LVPVQVPGLSGVVAVAAGAAHSLAVRSDGTVWTWGANSFGQLGDG 281

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 VPVRVQGL  V    VG++H+LAL+ DG++WAWG+N  GQLG   +  RS P+ 
Sbjct: 282 TKSDRLVPVRVQGLSGVVASDVGSYHSLALRSDGSVWAWGHNSSGQLGDDSSTSRSVPVQ 341

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V+GLSG   + + AG  HS A+  DG V+ WG    G  G G  +   +  P +V  L G
Sbjct: 342 VRGLSG--GMAVTAGSSHSLAVGSDGTVWAWGSNFSGERGEGTTNN--RASPVQVQGLGG 397

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              V V+ G  HS+A   DG ++++G  D G+LG G    +  P++V
Sbjct: 398 G--VAVAAGFNHSLAARSDGSVWAWGSNDSGQLGDGTTRNSTSPVQV 442



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 164/339 (48%), Gaps = 42/339 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+ AWGS + GQLG G          V+ L    V +V AG  +SLA+  DG        
Sbjct: 416 SVWAWGSNDSGQLGDGTTRNSTSPVQVQGLS--GVVAVAAGFDHSLALRSDGSVWAWGSN 473

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T    +P QV     + +V  A G  H LAV   G  + WG N YGQ G+ 
Sbjct: 474 AYGQLGEGTTTNRLVPVQVL----SGVVAVAAGSNHSLAVRSDGTVWTWGSNLYGQLGD- 528

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R  ++P +      V  VAAG  HS+ +  +G VW WG         G
Sbjct: 529 -------GTTSNR--LVPVQVQGLSGVAAVAAGSFHSLAVHSDGSVWAWGSNSSGELGDG 579

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 VP RV GL     +A G FH+L ++ DG +W WG+N +G+LG G T  RS P+ 
Sbjct: 580 TTSNRLVPGRVPGLSGGVAVAAGGFHSLVVRSDGTVWTWGSNSFGELGDGTTTSRSVPVQ 639

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQGLSG+  VD  AG  HS A+  DG V+ WG   +G+L  GD   + + VP +V  L+G
Sbjct: 640 VQGLSGVVAVD--AGNSHSLAVRSDGTVWTWGYNSYGQL--GDGTTTRRSVPVQVPGLSG 695

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
             +V ++ G  H + +  DG ++++G    G+LG G  +
Sbjct: 696 --VVAMATGALHPLVVRSDGTVWAWGYNSFGQLGNGSPL 732



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 173/345 (50%), Gaps = 38/345 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALE-----------PYKVRS---VVAGSRNSL 51
           S+ AWG+   GQLG G    R     V  L               VRS   V     NS 
Sbjct: 216 SVWAWGANSSGQLGDGTKINRLVPVQVPGLSGVVAVAAGAAHSLAVRSDGTVWTWGANSF 275

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG      +P +V  LS   +V + +G +H LA+   G  +AWG N  GQ G++  
Sbjct: 276 GQLGDGTKSDRLVPVRVQGLSG--VVASDVGSYHSLALRSDGSVWAWGHNSSGQLGDDSS 333

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                     R + +  R     +   V AG +HS+ +  +G VW WG  +      G  
Sbjct: 334 TS--------RSVPVQVRGLSGGMA--VTAGSSHSLAVGSDGTVWAWGSNFSGERGEGTT 383

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              + PV+VQGL     +A G  H+LA + DG++WAWG+N+ GQLG G T+  + P+ VQ
Sbjct: 384 NNRASPVQVQGLGGGVAVAAGFNHSLAARSDGSVWAWGSNDSGQLGDGTTRNSTSPVQVQ 443

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GLSG  +V +AAG  HS AL  DG V+ WG   +G+LG G    ++++VP  V +L+G  
Sbjct: 444 GLSG--VVAVAAGFDHSLALRSDGSVWAWGSNAYGQLGEG--TTTNRLVP--VQVLSG-- 495

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V V+ G  HS+A+  DG ++++G   +G+LG G       P++V
Sbjct: 496 VVAVAAGSNHSLAVRSDGTVWTWGSNLYGQLGDGTTSNRLVPVQV 540



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 176/380 (46%), Gaps = 56/380 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWGS   GQLG G    R     V  L    V SV AGS +SLA+  DG        
Sbjct: 166 TVWAWGSNFSGQLGDGTTSNRLVPVQVPGLS--GVVSVAAGSSHSLAVLSDGSVWAWGAN 223

Query: 59  --------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   TK    +P QV  LS    V A     H LAV   G  + WG N +GQ G+ 
Sbjct: 224 SSGQLGDGTKINRLVPVQVPGLSGVVAVAAGAA--HSLAVRSDGTVWTWGANSFGQLGDG 281

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDI 167
                      + D ++P R      V     G  HS+ L  +G VW WG       GD 
Sbjct: 282 T----------KSDRLVPVRVQGLSGVVASDVGSYHSLALRSDGSVWAWGHNSSGQLGDD 331

Query: 168 KQI--SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                SVPV+V+GL     +  G+ H+LA+  DG +WAWG+N  G+ G G T  R+ P+ 
Sbjct: 332 SSTSRSVPVQVRGLSGGMAVTAGSSHSLAVGSDGTVWAWGSNFSGERGEGTTNNRASPVQ 391

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQGL G   V +AAG  HS A   DG V+ WG  + G+LG G    S+   P +V  L+G
Sbjct: 392 VQGLGG--GVAVAAGFNHSLAARSDGSVWAWGSNDSGQLGDGTTRNSTS--PVQVQGLSG 447

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             +V V+ G  HS+AL  DG ++++G   +G+LG G       P++V   + A       
Sbjct: 448 --VVAVAAGFDHSLALRSDGSVWAWGSNAYGQLGEGTTTNRLVPVQVLSGVVA------- 498

Query: 346 VDRRWIAKLVACGGRHTLAI 365
                    VA G  H+LA+
Sbjct: 499 ---------VAAGSNHSLAV 509



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 183/379 (48%), Gaps = 54/379 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ A GS + GQLG G          V  L    V +V AGS +SLA+            
Sbjct: 66  TVWATGSNDLGQLGDGTTTNHSAPVQVPGLS--GVVAVAAGSSHSLAVRHDGTVWAWGSN 123

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P +V  LS   +V  A G  + LAV   G  +AWG N  GQ G+ 
Sbjct: 124 SDGQLGDGTTTMRLTPVRVQGLSG--VVSVAAGSSYSLAVRSDGTVWAWGSNFSGQLGD- 180

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDI 167
                  G    R  ++P +      V  VAAG +HS+ +  +G VW WG       GD 
Sbjct: 181 -------GTTSNR--LVPVQVPGLSGVVSVAAGSSHSLAVLSDGSVWAWGANSSGQLGDG 231

Query: 168 KQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            +I+  VPV+V GL  V  +A GA H+LA++ DG +W WG N +GQLG G    R  P+ 
Sbjct: 232 TKINRLVPVQVPGLSGVVAVAAGAAHSLAVRSDGTVWTWGANSFGQLGDGTKSDRLVPVR 291

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQGLSG+   D+  G +HS AL  DG V+ WG    G+L  GD+  +S+ VP +V  L+G
Sbjct: 292 VQGLSGVVASDV--GSYHSLALRSDGSVWAWGHNSSGQL--GDDSSTSRSVPVQVRGLSG 347

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
              + V+ G +HS+A+  DG ++++G    G  G G       P++V       +  G G
Sbjct: 348 G--MAVTAGSSHSLAVGSDGTVWAWGSNFSGERGEGTTNNRASPVQV-------QGLGGG 398

Query: 346 VDRRWIAKLVACGGRHTLA 364
           V        VA G  H+LA
Sbjct: 399 V-------AVAAGFNHSLA 410



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 127/215 (59%), Gaps = 20/215 (9%)

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQG 178
           P R AP     ++AAG ++S+ L  +G VW  G      D+ Q+        S PV+V G
Sbjct: 41  PLRDAPSRA--RLAAGSSYSLALRPDGTVWATGS----NDLGQLGDGTTTNHSAPVQVPG 94

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           L  V  +A G+ H+LA++ DG +WAWG+N  GQLG G T  R  P+ VQGLSG  +V +A
Sbjct: 95  LSGVVAVAAGSSHSLAVRHDGTVWAWGSNSDGQLGDGTTTMRLTPVRVQGLSG--VVSVA 152

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  +S A+  DG V+ WG    G+L  GD   S+++VP +V  L+G  +V V+ G +HS
Sbjct: 153 AGSSYSLAVRSDGTVWAWGSNFSGQL--GDGTTSNRLVPVQVPGLSG--VVSVAAGSSHS 208

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +A+  DG ++++G    G+LG G K+    P++VP
Sbjct: 209 LAVLSDGSVWAWGANSSGQLGDGTKINRLVPVQVP 243


>gi|312792299|ref|YP_004025222.1| regulator of chromosome condensation rcc1 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179439|gb|ADQ39609.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 754

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 182/359 (50%), Gaps = 52/359 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG+ E GQLG G N+       VK L+   V ++ AGS +SLA   DG        
Sbjct: 417 TVWAWGNNEFGQLGNGTNKSSFVPVQVKGLKD--VVAIAAGSDHSLAFKKDGTVWAWGNN 474

Query: 60  -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        +   +P QV  L +  +V  A G  H LA+   G  +AWG N +G  
Sbjct: 475 EFGQLGNGSGGYGQYYAVPVQVKGLKD--VVAVAAGSVHSLALKKDGTIWAWGSNYHGLL 532

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---- 162
           G + ER             +P +      V  +AAG  HS+VL ++G VW WG+ W    
Sbjct: 533 GNDIERS-----------FVPVQVKGLKDVVAIAAGSNHSLVLKKDGTVWAWGEVWFDLL 581

Query: 163 -PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                +   SVPV+++GL+ V  IA G  H+L L++DG +WAWG+N +GQLG    +  S
Sbjct: 582 NENSRLVYSSVPVQIKGLKDVVAIAAGEHHSLGLKKDGTVWAWGDNFFGQLGNSPREKYS 641

Query: 222 Q-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK----MV 276
             P+ V+GL    ++ IA G WHS A+  DG V+ WG    G+LG   N+ S K     V
Sbjct: 642 LVPVQVKGLK--DILAIATGEWHSLAIKKDGTVWAWGENSTGQLG---NETSGKDKYSYV 696

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPI 334
           P +V  +  +D++ +S G  HS+AL +DG ++ +G    G+LG  G  V +  P++V I
Sbjct: 697 PVQVKGI--KDVLAISAGSYHSLALKKDGTVWGWGANARGQLGNGGAGVYSTVPVQVII 753



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 157/301 (52%), Gaps = 37/301 (12%)

Query: 40  VRSVVAGSRNSLAICDDG----------------KTKTENIPSQVNALSNTKIVQAAIGG 83
           V ++ AG  +SLA+  DG                K++    P QV  L +  +V  A G 
Sbjct: 249 VVAIAAGRYHSLALKKDGTVWAWGNNYYGQLGNGKSEDSYDPVQVKNLKD--VVAIAAGE 306

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
            H LA+   G  +AWG NE+GQ G     K          + +P +      V  +AAG 
Sbjct: 307 NHSLALKKDGTIWAWGDNEWGQLGNSISEK----------LCVPVQFKSLKDVVAIAAGC 356

Query: 144 THSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG 199
            HS+ L ++G VW+WG  +      G+     VPV+V+GL+ V  IA G  H+LAL++DG
Sbjct: 357 EHSLALKKDGTVWSWGNNYYGQLGNGNSIDSYVPVQVRGLKDVVAIATGNAHSLALKKDG 416

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            +WAWGNNE+GQLG G  +    P+ V+GL    +V IAAG  HS A   DG V+ WG  
Sbjct: 417 TVWAWGNNEFGQLGNGTNKSSFVPVQVKGLK--DVVAIAAGSDHSLAFKKDGTVWAWGNN 474

Query: 260 EHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           E G+LG G         VP +V  L  +D+V V+ G  HS+AL +DG I+++G   HG L
Sbjct: 475 EFGQLGNGSGGYGQYYAVPVQVKGL--KDVVAVAAGSVHSLALKKDGTIWAWGSNYHGLL 532

Query: 319 G 319
           G
Sbjct: 533 G 533



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 187/385 (48%), Gaps = 63/385 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           ++ AWG    GQ G    EE   + V VK L+   V ++ AG  +SL +  DG       
Sbjct: 66  TVWAWGWNHWGQCG---TEESSIIPVKVKGLKD--VVAIAAGRYHSLTLKKDGTVWAWGS 120

Query: 60  ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       +   +P QV  L +  +V  A G  + L +   G  + WG NE  Q  
Sbjct: 121 NKDGQLGNRDAGEYSIVPVQVKGLKD--VVAIAAGDGYSLGLKKDGTVWCWGLNESIQVI 178

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
           +             +D  +P +      V  +AAG  +S+ L ++G VW W   +     
Sbjct: 179 DGS----------NKDFSVPFQIKGLKDVVAIAAGKDYSLALKKDGTVWMWEYKYNYYEQ 228

Query: 165 ---GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G  +   VPV+V+GL+ V  IA G +H+LAL++DG +WAWGNN YGQLG G ++   
Sbjct: 229 LRRGADEYSPVPVQVEGLKDVVAIAAGRYHSLALKKDGTVWAWGNNYYGQLGNGKSEDSY 288

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM-VPQKV 280
            P+ V+ L    +V IAAG  HS AL  DG ++ WG  E G+LG   N  S K+ VP + 
Sbjct: 289 DPVQVKNLK--DVVAIAAGENHSLALKKDGTIWAWGDNEWGQLG---NSISEKLCVPVQF 343

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L  +D+V ++ G  HS+AL +DG ++S+G   +G+LG G  + +  P++V       R
Sbjct: 344 KSL--KDVVAIAAGCEHSLALKKDGTVWSWGNNYYGQLGNGNSIDSYVPVQV-------R 394

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
              D V        +A G  H+LA+
Sbjct: 395 GLKDVV-------AIATGNAHSLAL 412



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 187/383 (48%), Gaps = 57/383 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCV---VKALEPYKVRSVVAGSRNSLAI--------- 53
           ++ AWGS +DGQLG  N +  E+  V   VK L+   V ++ AG   SL +         
Sbjct: 114 TVWAWGSNKDGQLG--NRDAGEYSIVPVQVKGLKD--VVAIAAGDGYSLGLKKDGTVWCW 169

Query: 54  -------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG  K  ++P Q+  L +  +V  A G  + LA+   G  + W   EY   
Sbjct: 170 GLNESIQVIDGSNKDFSVPFQIKGLKD--VVAIAAGKDYSLALKKDGTVWMW---EYKYN 224

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--- 163
             E  R     R       +P +      V  +AAG  HS+ L ++G VW WG  +    
Sbjct: 225 YYEQLR-----RGADEYSPVPVQVEGLKDVVAIAAGRYHSLALKKDGTVWAWGNNYYGQL 279

Query: 164 -PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G  +    PV+V+ L+ V  IA G  H+LAL++DG +WAWG+NE+GQLG   ++    
Sbjct: 280 GNGKSEDSYDPVQVKNLKDVVAIAAGENHSLALKKDGTIWAWGDNEWGQLGNSISEKLCV 339

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+  + L    +V IAAG  HS AL  DG V+ WG   +G+LG G++  S   VP +V  
Sbjct: 340 PVQFKSLK--DVVAIAAGCEHSLALKKDGTVWSWGNNYYGQLGNGNSIDS--YVPVQVRG 395

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L  +D+V ++ G  HS+AL +DG ++++G  + G+LG G    T +   VP+ +   ++ 
Sbjct: 396 L--KDVVAIATGNAHSLALKKDGTVWAWGNNEFGQLGNG----TNKSSFVPVQVKGLKD- 448

Query: 343 GDGVDRRWIAKLVACGGRHTLAI 365
                       +A G  H+LA 
Sbjct: 449 ---------VVAIAAGSDHSLAF 462



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 173/353 (49%), Gaps = 66/353 (18%)

Query: 58  KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE------ 111
           ++++++  + ++ L N  I+Q A G +H LA+   G  +AWG N +GQCG E        
Sbjct: 31  QSESDSETTLLSKLENN-IIQIAAGNYHSLALKGDGTVWAWGWNHWGQCGTEESSIIPVK 89

Query: 112 --------------------RKDDT---------GRILRRDI----VIPQRCAPKLIVRQ 138
                               +KD T         G++  RD     ++P +      V  
Sbjct: 90  VKGLKDVVAIAAGRYHSLTLKKDGTVWAWGSNKDGQLGNRDAGEYSIVPVQVKGLKDVVA 149

Query: 139 VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           +AAG  +S+ L ++G VW WG         G  K  SVP +++GL+ V  IA G  ++LA
Sbjct: 150 IAAGDGYSLGLKKDGTVWCWGLNESIQVIDGSNKDFSVPFQIKGLKDVVAIAAGKDYSLA 209

Query: 195 LQEDGALWAW--GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           L++DG +W W    N Y QL  G  +    P+ V+GL    +V IAAG +HS AL  DG 
Sbjct: 210 LKKDGTVWMWEYKYNYYEQLRRGADEYSPVPVQVEGLK--DVVAIAAGRYHSLALKKDGT 267

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG   +G+LG G ++ S   V  K NL   +D+V ++ G  HS+AL +DG I+++G 
Sbjct: 268 VWAWGNNYYGQLGNGKSEDSYDPVQVK-NL---KDVVAIAAGENHSLALKKDGTIWAWGD 323

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            + G+LG     +  + + VP+   + ++             +A G  H+LA+
Sbjct: 324 NEWGQLGN----SISEKLCVPVQFKSLKD----------VVAIAAGCEHSLAL 362


>gi|328715082|ref|XP_001946768.2| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Acyrthosiphon
            pisum]
          Length = 4404

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 118/395 (29%), Positives = 183/395 (46%), Gaps = 53/395 (13%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----TE 62
            +  WG    GQL   ++ + +      +L   K   V+ G +   A+   GK      TE
Sbjct: 3546 VYVWGHNHRGQLACMDSSQVKKPLACDSLSVLKPTQVIGGEQTMFAVTSYGKVYASGYTE 3605

Query: 63   N----------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
            +                 P  V  L+N   V    GG HCLA+   G  YAWG  + G+ 
Sbjct: 3606 SGRLGIGPYNPKNPYVVTPQLVQGLNNIIKVAVNSGGRHCLALSTTGEVYAWGDGDDGKL 3665

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G          R+      + Q  + K I+  +A GG HS  ++R GH++TWG+      
Sbjct: 3666 GL-------GNRVTHSKPQLVQSLSDKCII-DIACGGFHSAAISRYGHLYTWGKGRYGRL 3717

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  VQGL    ++ V    G    + +  D  +W+WG+ +YG+LG   ++
Sbjct: 3718 GHGDYEDYLYPKLVQGLINYHVVKVACGSGDAQTMCVTSDDNVWSWGDGDYGKLGHNISE 3777

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ LSG  ++ I  G   S AL+ +G +Y WG+G++ RLG G ++   K  P+
Sbjct: 3778 SCKLPCKIESLSGKGIIQIDCGSQFSVALSANGTLYTWGKGDYFRLGHGSSEHVRK--PK 3835

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
             V+ L G+ IVQ S G  H +ALT DG ++++G  D G+LG G    T  P+  P  I A
Sbjct: 3836 PVSGLQGKKIVQFSTGSLHVLALTDDGEVYAWGDNDEGQLGDG----TAHPIARPRPIAA 3891

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
             +  G  + +      V+CG  H+ A   W +EE+
Sbjct: 3892 LK--GKRIQQ------VSCGSAHSFA---WASEEA 3915



 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 145/315 (46%), Gaps = 68/315 (21%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +++T  + AWG G+DG+LG+GN                                      
Sbjct: 3648 LSTTGEVYAWGDGDDGKLGLGNR------------------------------------V 3671

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            T + P  V +LS+  I+  A GG+H  A+   G  Y WG   YG+ G             
Sbjct: 3672 THSKPQLVQSLSDKCIIDIACGGFHSAAISRYGHLYTWGKGRYGRLGHGD---------- 3721

Query: 121  RRDIVIPQRCAPKLI---VRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQI----- 170
              D + P +    LI   V +VA  +G   ++ +T + +VW+WG     GD  ++     
Sbjct: 3722 YEDYLYP-KLVQGLINYHVVKVACGSGDAQTMCVTSDDNVWSWGD----GDYGKLGHNIS 3776

Query: 171  ---SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                +P +++ L    +I +  G+  ++AL  +G L+ WG  +Y +LG G ++   +P P
Sbjct: 3777 ESCKLPCKIESLSGKGIIQIDCGSQFSVALSANGTLYTWGKGDYFRLGHGSSEHVRKPKP 3836

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            V GL G  +V  + G  H  ALTDDGEVY WG  + G+LG G     ++  P+ +  L G
Sbjct: 3837 VSGLQGKKIVQFSTGSLHVLALTDDGEVYAWGDNDEGQLGDGTAHPIAR--PRPIAALKG 3894

Query: 286  EDIVQVSCGGTHSVA 300
            + I QVSCG  HS A
Sbjct: 3895 KRIQQVSCGSAHSFA 3909



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 165/353 (46%), Gaps = 36/353 (10%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
            S  ++  WG  + GQLG  N  + +     +AL   K   +V GS++   + ++GK    
Sbjct: 2591 SEYAVYVWGLNDKGQLGGLNGSKVKRPTFNEALTALKPIEIVGGSKSLFIVSNEGKVFVC 2650

Query: 60   -------------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYG 104
                            + P Q+  LS   I   A+  GG H +A+   G+  +WG  E G
Sbjct: 2651 GDSSGGRLGIPFCGKVSSPRQIPGLSQFVIKTVAVHSGGKHAMALSLDGKVLSWGDGEDG 2710

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
            + G       DT +++  D ++ +R      V  +A G  HS  +T +G ++TWGQ    
Sbjct: 2711 KLGHGDILTLDTPKLI--DSLLAKR------VFYIACGSAHSAAITSDGELYTWGQGQYG 2762

Query: 163  PPGDIKQIS--VPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGD 216
              G   ++S   P  V+    + +  +A G+     LAL  +G +++WG+ ++G+LG G 
Sbjct: 2763 RLGHSDEVSQHTPKLVKEFVGKNITQVACGSRDAQTLALDSEGNVYSWGDGDFGKLGRGG 2822

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P  V+ L G  +V I  G   S ALT  G+V+ WG+GE+ RLG G  +   +  
Sbjct: 2823 SDGCCTPQKVERLVGHRVVQIECGAQFSVALTATGQVWTWGKGEYYRLGLGRGEHVRR-- 2880

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            P  VN L    I  ++ G  H +A++  G ++ +G  DHG+ G G      +P
Sbjct: 2881 PTLVNQLKLVTIDHIAVGTLHCIAVSTQGDVYCWGDNDHGQQGNGTTNANQEP 2933



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 130/306 (42%), Gaps = 62/306 (20%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
            +++WG GEDG+LG                                     G   T + P 
Sbjct: 2701 VLSWGDGEDGKLG------------------------------------HGDILTLDTPK 2724

Query: 67   QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
             +++L   ++   A G  H  A+   G  Y WG  +YG+ G   E    T ++++  +  
Sbjct: 2725 LIDSLLAKRVFYIACGSAHSAAITSDGELYTWGQGQYGRLGHSDEVSQHTPKLVKEFV-- 2782

Query: 127  PQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRV 176
                     + QVA G     ++ L  EG+V++WG     GD  ++          P +V
Sbjct: 2783 ------GKNITQVACGSRDAQTLALDSEGNVYSWGD----GDFGKLGRGGSDGCCTPQKV 2832

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L   +V  I  GA  ++AL   G +W WG  EY +LG G  +   +P  V  L  +T+
Sbjct: 2833 ERLVGHRVVQIECGAQFSVALTATGQVWTWGKGEYYRLGLGRGEHVRRPTLVNQLKLVTI 2892

Query: 235  VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
              IA G  H  A++  G+VY WG  +HG+ G G  + + +  P+ V       I +V CG
Sbjct: 2893 DHIAVGTLHCIAVSTQGDVYCWGDNDHGQQGNGTTNANQE--PRLVTNFNNIKINRVGCG 2950

Query: 295  GTHSVA 300
             + S+A
Sbjct: 2951 SSQSIA 2956



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 54/255 (21%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S   +  WG G+ G+LG  +   +    +VK      +  V  GSR++          
Sbjct: 2747 ITSDGELYTWGQGQYGRLGHSDEVSQHTPKLVKEFVGKNITQVACGSRDA---------- 2796

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      LA+D +G  Y+WG  ++G+ G    R    G   
Sbjct: 2797 ------------------------QTLALDSEGNVYSWGDGDFGKLG----RGGSDG--- 2825

Query: 121  RRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
                  PQ+   +L+   V Q+  G   SV LT  G VWTWG+        G  + +  P
Sbjct: 2826 ---CCTPQK-VERLVGHRVVQIECGAQFSVALTATGQVWTWGKGEYYRLGLGRGEHVRRP 2881

Query: 174  VRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
              V  L+ V +  IAVG  H +A+   G ++ WG+N++GQ G G T    +P  V   + 
Sbjct: 2882 TLVNQLKLVTIDHIAVGTLHCIAVSTQGDVYCWGDNDHGQQGNGTTNANQEPRLVTNFNN 2941

Query: 232  LTLVDIAAGGWHSTA 246
            + +  +  G   S A
Sbjct: 2942 IKINRVGCGSSQSIA 2956



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 70/222 (31%)

Query: 200  ALWAWGNNEYGQLG------------------------------------------TGDT 217
            A++ WG N+ GQLG                                           GD+
Sbjct: 2594 AVYVWGLNDKGQLGGLNGSKVKRPTFNEALTALKPIEIVGGSKSLFIVSNEGKVFVCGDS 2653

Query: 218  QPRSQPIP----------VQGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRLG 265
                  IP          + GLS   +  +A  +GG H+ AL+ DG+V  WG GE G+LG
Sbjct: 2654 SGGRLGIPFCGKVSSPRQIPGLSQFVIKTVAVHSGGKHAMALSLDGKVLSWGDGEDGKLG 2713

Query: 266  FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             G  D  +   P+ ++ L  + +  ++CG  HS A+T DG ++++G+G +GRLG+  +V+
Sbjct: 2714 HG--DILTLDTPKLIDSLLAKRVFYIACGSAHSAAITSDGELYTWGQGQYGRLGHSDEVS 2771

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR--HTLAI 365
               P  V          G  + +      VACG R   TLA+
Sbjct: 2772 QHTPKLV------KEFVGKNITQ------VACGSRDAQTLAL 2801



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 122/301 (40%), Gaps = 37/301 (12%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKT------KTENIPSQVNALSNTKIVQAAIGGW 84
           V+  LE   V SVV  SRN + +     T        +++  +   + N  +    +   
Sbjct: 444 VILTLERLHVESVVC-SRNEILVVTTSGTLHFISYSIDSLNFEEKQMMNVPMKSVDVYDE 502

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGE--------EPERKDDTGRILRRDIVIPQRCAPKLIV 136
             LAV  +G  Y+WG NE+G  G          PE               P     KLIV
Sbjct: 503 TYLAVTQKGEVYSWGVNEFGALGHGQKYSSFPTPE---------------PIVAFSKLIV 547

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN--LA 194
             V+ G      +T +G ++ WG+     +       V+      V  ++ G+  N  LA
Sbjct: 548 VMVSCGKDFCAAVTEDGKLYMWGKILHSSNCCYTPELVKSISEWHVSKVSCGSSINNTLA 607

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  +G ++++   EY     G        IP   +    +V I      +  +     V+
Sbjct: 608 LSREGYVFSF---EYRNSDRGCDDKSLNVIPSMIVFDYEIVSIYCHNDVNAVIDCANNVF 664

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WGRG +  LG  ++ + ++  P++V  L+G+ +  +S    + +ALT  G ++ +G+ D
Sbjct: 665 TWGRGNNNMLGHNNSFRVNR--PKEVKFLSGKQVTSLSLADDYILALTDTGQVYCWGQLD 722

Query: 315 H 315
           +
Sbjct: 723 N 723



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 60/192 (31%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           LA+ + G +++WG NE+G LG G        P P+   S L +V ++ G     A+T+DG
Sbjct: 505 LAVTQKGEVYSWGVNEFGALGHGQKYSSFPTPEPIVAFSKLIVVMVSCGKDFCAAVTEDG 564

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT--HSVALTRDGHIFS 309
           ++Y WG+  H          +    P+ V  ++   + +VSCG +  +++AL+R+G++FS
Sbjct: 565 KLYMWGKILH--------SSNCCYTPELVKSISEWHVSKVSCGSSINNTLALSREGYVFS 616

Query: 310 F-------------------------------------------------GRGDHGRLGY 320
           F                                                 GRG++  LG+
Sbjct: 617 FEYRNSDRGCDDKSLNVIPSMIVFDYEIVSIYCHNDVNAVIDCANNVFTWGRGNNNMLGH 676

Query: 321 GRKVTTGQPMEV 332
                  +P EV
Sbjct: 677 NNSFRVNRPKEV 688



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 31/242 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG-QCGEEPERKDDTGRILRRD 123
           P  + A S   +V  + G   C AV + G+ Y WG   +   C   PE        L + 
Sbjct: 536 PEPIVAFSKLIVVMVSCGKDFCAAVTEDGKLYMWGKILHSSNCCYTPE--------LVKS 587

Query: 124 IVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWT--WGQPWPPGDIKQISV-PVRVQG 178
           I        +  V +V+ G +  +++ L+REG+V++  +       D K ++V P  +  
Sbjct: 588 I-------SEWHVSKVSCGSSINNTLALSREGYVFSFEYRNSDRGCDDKSLNVIPSMIVF 640

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
             ++  I      N  +     ++ WG      LG  ++   ++P  V+ LSG  +  ++
Sbjct: 641 DYEIVSIYCHNDVNAVIDCANNVFTWGRGNNNMLGHNNSFRVNRPKEVKFLSGKQVTSLS 700

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
               +  ALTD G+VY WG+         DN+ +++  P  V  L    + +++C     
Sbjct: 701 LADDYILALTDTGQVYCWGQ--------LDNENTTQCRP--VKCLMNRQVKKIACSPNQC 750

Query: 299 VA 300
            A
Sbjct: 751 FA 752


>gi|386813626|ref|ZP_10100850.1| conserved hypothetical protein [planctomycete KSU-1]
 gi|386403123|dbj|GAB63731.1| conserved hypothetical protein [planctomycete KSU-1]
          Length = 407

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 176/354 (49%), Gaps = 40/354 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  +++ WG    GQLG G N +R+    VK L    V ++  G+ +S+A+  DG   
Sbjct: 73  LKSDGTVLTWGQNMHGQLGDGTNTDRKIPVQVKDLN--NVTAIAGGAWHSVALTSDGTVW 130

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         TK+ N P QVN L N  I   A  G H LA+   G  + WG N YG
Sbjct: 131 TWGSNWAGQLGDGTTKSRNKPVQVNNLKN--ITAIASKGLHNLALKSDGTVWTWGRNIYG 188

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPW 162
           Q G+        G    R+  +  R    +I   +A GG HS+    +G +WTWG  Q  
Sbjct: 189 QLGD--------GTTTDRNTPVQTRSLNTII--SIAGGGYHSLAQKADGTIWTWGLNQYG 238

Query: 163 PPGD--IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             GD  I   ++PV V G++ V +I  G  H++ L+ +G +W WG N++GQLG   T  R
Sbjct: 239 QLGDGTITNRTIPVLVNGIKDVSMIRCGGDHSIVLKNNGTIWIWGFNQHGQLGDRSTDNR 298

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S P+P+  L  +  +D   GG HS  L  DG V+ WG  E+G+L  GD    S+  P + 
Sbjct: 299 STPVPMGDLKNIMTID--GGGDHSLILKSDGTVWTWGNNENGQL--GDGTTMSRATPIQA 354

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           + L+  ++  ++ G  HS+AL  DG I+++G   +G+LG G       P+ V I
Sbjct: 355 STLS--NVTAIASGEQHSIALKSDGTIWAWGSNRNGQLGDGSISNRSTPVLVKI 406



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 142/267 (53%), Gaps = 26/267 (9%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE--EPERKDDTGRILRRDIVIPQRCA 131
           + I+Q + G +H +A+   G    WG N +GQ G+    +RK            IP +  
Sbjct: 58  STILQVSGGSFHSIALKSDGTVLTWGQNMHGQLGDGTNTDRK------------IPVQVK 105

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
               V  +A G  HSV LT +G VWTWG  W      G  K  + PV+V  L+ +  IA 
Sbjct: 106 DLNNVTAIAGGAWHSVALTSDGTVWTWGSNWAGQLGDGTTKSRNKPVQVNNLKNITAIAS 165

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
              HNLAL+ DG +W WG N YGQLG G T  R+ P+  + L+  T++ IA GG+HS A 
Sbjct: 166 KGLHNLALKSDGTVWTWGRNIYGQLGDGTTTDRNTPVQTRSLN--TIISIAGGGYHSLAQ 223

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG ++ WG  ++G+L  GD   +++ +P  VN +  +D+  + CGG HS+ L  +G I
Sbjct: 224 KADGTIWTWGLNQYGQL--GDGTITNRTIPVLVNGI--KDVSMIRCGGDHSIVLKNNGTI 279

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           + +G   HG+L  G + T  +   VP+
Sbjct: 280 WIWGFNQHGQL--GDRSTDNRSTPVPM 304



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 26/235 (11%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFH 191
           + QV+ G  HS+ L  +G V TWGQ        G      +PV+V+ L  V  IA GA+H
Sbjct: 60  ILQVSGGSFHSIALKSDGTVLTWGQNMHGQLGDGTNTDRKIPVQVKDLNNVTAIAGGAWH 119

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           ++AL  DG +W WG+N  GQLG G T+ R++P+ V  L  +T   IA+ G H+ AL  DG
Sbjct: 120 SVALTSDGTVWTWGSNWAGQLGDGTTKSRNKPVQVNNLKNITA--IASKGLHNLALKSDG 177

Query: 252 EVYGWGRGEHGRLGFG-DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            V+ WGR  +G+LG G   D+++ +  + +N      I+ ++ GG HS+A   DG I+++
Sbjct: 178 TVWTWGRNIYGQLGDGTTTDRNTPVQTRSLN-----TIISIAGGGYHSLAQKADGTIWTW 232

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G   +G+LG G    T     +P+ +   ++            ++ CGG H++ +
Sbjct: 233 GLNQYGQLGDG----TITNRTIPVLVNGIKD----------VSMIRCGGDHSIVL 273


>gi|348688336|gb|EGZ28150.1| hypothetical protein PHYSODRAFT_321832 [Phytophthora sojae]
          Length = 423

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 197/418 (47%), Gaps = 77/418 (18%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCV-----------VKALEPYKVRSVVAGSRNS 50
           A+  +++A+G  +DGQLG G  + R  + +           +  L   ++ +V  GSR++
Sbjct: 7   ATECAVVAFGCNDDGQLGTGA-KRRPTLAIDDVSASNFPKQLGGLLGEEIVAVSCGSRHT 65

Query: 51  LAICDDGKT----------------KTENIPSQVNALSN--TKIVQAAIGGWHCLAVDDQ 92
           +A+   G                  K+ N+P ++        K+   + GG H  AV + 
Sbjct: 66  MALTASGAVYSWGWGSMGQLGHGDLKSINVPQKIAFFEQEGLKVDYVSCGGCHSAAVTND 125

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G  Y WG   +GQ G  P+  +           + +  A + +V+ V+ GGTH+  LT  
Sbjct: 126 GTLYMWGETHWGQLGL-PKEFEAAHESFPVKCPLLEGVADESVVK-VSCGGTHTAALTNL 183

Query: 153 GHVWTWGQPWPPGDIKQISV------------------PVRVQGL--EQVKLIAVGAFHN 192
           G V+ WG+    GD  Q+ +                  P  V+G   E+V  +A GAFH+
Sbjct: 184 GRVYVWGR----GDSGQLGIGSAWLKDTDDNGLLGVSRPHLVEGFNGEKVVQVACGAFHS 239

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
            A+ E G ++ WG  +YG LG G T  +  P  V+    +  + ++ GGWH+  +   G+
Sbjct: 240 AAVTEQGHVYIWGKEDYGMLGVGQTSDQQTPKRVEFFDDIPALRVSCGGWHTMVVAKSGD 299

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
            Y +GRGE+GRLG GD    S+  P  V  L G+ ++Q +CGG+H++ +T DG  +  GR
Sbjct: 300 CYAFGRGEYGRLGLGDT--KSRTRPHLVKALKGQTVIQAACGGSHTLFVTSDGIAYVAGR 357

Query: 313 GDHGRLGYGRKVTTGQPMEVPINI---PAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            DHGRLG    +T  +P+ VP  +   P P             + V+ GG H++A+  
Sbjct: 358 PDHGRLG----MTDMKPLSVPTRLDLGPIP------------VRQVSAGGAHSMALTH 399



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 167/344 (48%), Gaps = 40/344 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP--YKVRSVVAGSRNSLAICDDG- 57
           + ++ ++ +WG G  GQLG G+ +       +   E    KV  V  G  +S A+ +DG 
Sbjct: 68  LTASGAVYSWGWGSMGQLGHGDLKSINVPQKIAFFEQEGLKVDYVSCGGCHSAAVTNDGT 127

Query: 58  ------------------KTKTENIPSQ---VNALSNTKIVQAAIGGWHCLAVDDQGRAY 96
                             +   E+ P +   +  +++  +V+ + GG H  A+ + GR Y
Sbjct: 128 LYMWGETHWGQLGLPKEFEAAHESFPVKCPLLEGVADESVVKVSCGGTHTAALTNLGRVY 187

Query: 97  AWGGNEYGQCGEEP---ERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
            WG  + GQ G      +  DD G + + R  ++      K++  QVA G  HS  +T +
Sbjct: 188 VWGRGDSGQLGIGSAWLKDTDDNGLLGVSRPHLVEGFNGEKVV--QVACGAFHSAAVTEQ 245

Query: 153 GHVWTWGQP----WPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
           GHV+ WG+        G       P RV+  + +  + V  G +H + + + G  +A+G 
Sbjct: 246 GHVYIWGKEDYGMLGVGQTSDQQTPKRVEFFDDIPALRVSCGGWHTMVVAKSGDCYAFGR 305

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
            EYG+LG GDT+ R++P  V+ L G T++  A GG H+  +T DG  Y  GR +HGRLG 
Sbjct: 306 GEYGRLGLGDTKSRTRPHLVKALKGQTVIQAACGGSHTLFVTSDGIAYVAGRPDHGRLGM 365

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFS 309
            D    S  VP +++L     + QVS GG HS+ALT     IFS
Sbjct: 366 TDMKPLS--VPTRLDL-GPIPVRQVSAGGAHSMALTHSSRPIFS 406


>gi|226495309|ref|NP_001141147.1| putative regulator of chromosome condensation (RCC1) family protein
           [Zea mays]
 gi|194702882|gb|ACF85525.1| unknown [Zea mays]
 gi|224030327|gb|ACN34239.1| unknown [Zea mays]
 gi|414587150|tpg|DAA37721.1| TPA: putative regulator of chromosome condensation (RCC1) family
           protein [Zea mays]
          Length = 443

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 178/353 (50%), Gaps = 41/353 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + +WG GEDGQLG G+ E+R    V+   +   + SV+ G+ ++ A  +D          
Sbjct: 34  LCSWGRGEDGQLGHGDAEDRLVPTVLSGFDAPAITSVICGADHTTAYSEDELQVYSWGWG 93

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +     P  V AL   KI Q A G  HCLAV   G   +WG N+ GQ G  
Sbjct: 94  DFGRLGHGNSSDVFTPQPVKALQGLKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLG 153

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                        D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W     
Sbjct: 154 ----------TTEDSLLPQKIQAFESVCVKMIAAGAEHTAAVTEDGDLYGWG--WGRYGN 201

Query: 165 ---GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     +P +V  +E  ++ L+A G  H + + + G L+ +G ++YGQLG GD + 
Sbjct: 202 LGLGDRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGHGDFED 261

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P  V+ L   T+  I+ G  H+ ALT +G++YGWG  + G++G G+ND  S   P +
Sbjct: 262 HLVPHKVEALKDSTISQISGGWRHTMALTSEGKLYGWGWNKFGQVGVGNNDDHSS--PGQ 319

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           V+    + I QV+CG  H++AL+   ++FS+GRG  G+LG G  V    P+ +
Sbjct: 320 VSFPEDQKISQVACGWRHTLALSEKKNVFSWGRGTSGQLGNGEIVDRNTPVLI 372



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+       +WG  E GQ G      D   R++    V+    AP   
Sbjct: 15  VVLVSAGASHSVALLTGNVLCSWGRGEDGQLG----HGDAEDRLV--PTVLSGFDAPA-- 66

Query: 136 VRQVAAGGTHSVVLTR-EGHVWTWGQPWPP------GDIKQISVPVRVQGLE--QVKLIA 186
           +  V  G  H+   +  E  V++WG  W        G+   +  P  V+ L+  ++K IA
Sbjct: 67  ITSVICGADHTTAYSEDELQVYSWG--WGDFGRLGHGNSSDVFTPQPVKALQGLKIKQIA 124

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+   G + +WG N+ GQLG G T+    P  +Q    + +  IAAG  H+ A
Sbjct: 125 CGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAFESVCVKMIAAGAEHTAA 184

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ +++P+KV+ + GE +V V+CG  H++ ++  G+
Sbjct: 185 VTEDGDLYGWGWGRYGNLGLG--DRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGN 242

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   VP  + A +++            ++ G RHT+A+ 
Sbjct: 243 LYTYGWSKYGQLGHGDF----EDHLVPHKVEALKDS--------TISQISGGWRHTMALT 290



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 21/252 (8%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D V+    +P   V  V+AG +HSV L     + +WG+        GD +   VP  + G
Sbjct: 2   DSVMAAPDSPPQTVVLVSAGASHSVALLTGNVLCSWGRGEDGQLGHGDAEDRLVPTVLSG 61

Query: 179 LEQVKLIAV--GAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            +   + +V  GA H  A  ED   +++WG  ++G+LG G++     P PV+ L GL + 
Sbjct: 62  FDAPAITSVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQGLKIK 121

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H  A+T  GEV  WGR ++G+LG G  + S  ++PQK+       +  ++ G 
Sbjct: 122 QIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDS--LLPQKIQAFESVCVKMIAAGA 179

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+ A+T DG ++ +G G +G LG G +     P +V  ++   +             LV
Sbjct: 180 EHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLLPEKVS-SVEGEKMV-----------LV 227

Query: 356 ACGGRHTLAIVE 367
           ACG RHT+ + +
Sbjct: 228 ACGWRHTITVSD 239



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 38/250 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G  E+      ++A E   V+ + AG+ ++ A+ +DG         
Sbjct: 139 VQSWGRNQNGQLGLGTTEDSLLPQKIQAFESVCVKMIAAGAEHTAAVTEDGDLYGWGWGR 198

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V+++   K+V  A G  H + V D G  Y +G ++YGQ G   
Sbjct: 199 YGNLGLGDRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGHGD 258

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                       D ++P +        + Q++ G  H++ LT EG ++ WG  W      
Sbjct: 259 ----------FEDHLVPHKVEALKDSTISQISGGWRHTMALTSEGKLYGWG--WNKFGQV 306

Query: 165 --GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             G+    S P +V   E  K+  +A G  H LAL E   +++WG    GQLG G+   R
Sbjct: 307 GVGNNDDHSSPGQVSFPEDQKISQVACGWRHTLALSEKKNVFSWGRGTSGQLGNGEIVDR 366

Query: 221 SQPIPVQGLS 230
           + P+ +  LS
Sbjct: 367 NTPVLIDALS 376


>gi|340505900|gb|EGR32173.1| regulator of chromosome condensation, putative [Ichthyophthirius
           multifiliis]
          Length = 427

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 190/399 (47%), Gaps = 52/399 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWG G  GQLG+ N   +     V+ L    +  V A    S+A+  DGK  T    
Sbjct: 44  TVYAWGYGNFGQLGLANENNQYSPQEVEKLSDRNIIKVKANKSVSMALSQDGKVYTWGKN 103

Query: 62  ------------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                        N+  P  V  L N +I Q + G +H  A+   G  Y WG  ++G+ G
Sbjct: 104 KGGILGHYDITSFNMIQPELVEKLENIQIKQISCGPFHMAAISQDGELYTWGNKDHGKLG 163

Query: 108 EEPERKDDTGRILRRD--------IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWT 157
            E ++K +   I R +         ++P +      +  +QV+ GG  +VVLT  G V++
Sbjct: 164 HEIQQKSNKVEIKRGNQNYDYAEGSMLPTKVQSLNGIKCKQVSCGGQFTVVLTENGEVYS 223

Query: 158 WG---------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           +G         Q    G+ +    P ++  L+ +  I  G   + A+   G ++ WGNN+
Sbjct: 224 FGNSMKGQLGYQSEETGNFQ----PKKIPDLQNIINIDCGQQFSAAVSSSGKVYTWGNND 279

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           +GQLG   +  +++P  V G  G  +++I+ G     AL+++G+++ WG G  G+L  G 
Sbjct: 280 HGQLGNNQSIYQARPNQVTGFGGNKIINISCGDNFIAALSNEGKLFTWGYGNDGQL--GH 337

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
           ++++    P+++     E I++V CGGTH+  LT++  ++ FGRG+ G+LG G  + +  
Sbjct: 338 SNRNDLYAPKQIEF--KEKIIKVDCGGTHTAFLTQNNQLYLFGRGNEGQLGIGENIESEA 395

Query: 329 PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +     I         VD       V CGG +TLAI E
Sbjct: 396 AIRTTPKIVEFFKKMKVVD-------VTCGGEYTLAITE 427



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 135/271 (49%), Gaps = 45/271 (16%)

Query: 92  QGRAYAWGGNEYGQCGEEPERK----DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           Q   YAWG   +GQ G   E       +  ++  R+I+            +V A  + S+
Sbjct: 42  QKTVYAWGYGNFGQLGLANENNQYSPQEVEKLSDRNII------------KVKANKSVSM 89

Query: 148 VLTREGHVWTWGQP----WPPGDIKQISV--PVRVQGLE--QVKLIAVGAFHNLALQEDG 199
            L+++G V+TWG+         DI   ++  P  V+ LE  Q+K I+ G FH  A+ +DG
Sbjct: 90  ALSQDGKVYTWGKNKGGILGHYDITSFNMIQPELVEKLENIQIKQISCGPFHMAAISQDG 149

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQ------------------PIPVQGLSGLTLVDIAAGG 241
            L+ WGN ++G+LG    Q  ++                  P  VQ L+G+    ++ GG
Sbjct: 150 ELYTWGNKDHGKLGHEIQQKSNKVEIKRGNQNYDYAEGSMLPTKVQSLNGIKCKQVSCGG 209

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             +  LT++GEVY +G    G+LG+  ++++    P+K+  L  ++I+ + CG   S A+
Sbjct: 210 QFTVVLTENGEVYSFGNSMKGQLGY-QSEETGNFQPKKIPDL--QNIINIDCGQQFSAAV 266

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +  G ++++G  DHG+LG  + +   +P +V
Sbjct: 267 SSSGKVYTWGNNDHGQLGNNQSIYQARPNQV 297


>gi|326518338|dbj|BAJ88198.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326519062|dbj|BAJ96530.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 441

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 176/358 (49%), Gaps = 41/358 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           +  WG GEDGQLG G+ E+R    V+   +   + SV+ G+ ++ A  +D          
Sbjct: 35  LCTWGRGEDGQLGHGDAEDRLVPTVISGFDAPGITSVICGADHTTAYSEDEHQVYSWGWG 94

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +     P  V AL   KI Q A G  HCLAV   G   +WG N+ GQ G  
Sbjct: 95  DFGRLGHGNSTDVFTPQPVKALQGIKIKQLACGDSHCLAVTMAGEVLSWGRNQNGQLGLG 154

Query: 110 PERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                        D ++PQ  +    + V+ +AAG  H+  +T +G ++ WG  W     
Sbjct: 155 ----------TTEDSLLPQTIQAFEGISVKMIAAGAEHTAAVTEDGDIYGWG--WGRYGN 202

Query: 165 ---GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP +V  +E  ++ L+A G  H + +   G+L+ +G ++YGQLG GD + 
Sbjct: 203 LGLGDRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGSLYTYGWSKYGQLGHGDFED 262

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P  V+ L   +   I+ G  H+ ALT DG++YGWG  + G++G GDN  +    P +
Sbjct: 263 HLVPHKVEALKDSSTSQISGGWRHTMALTSDGKLYGWGWNKFGQVGAGDN--ADHCSPAQ 320

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           VN    + + QV+CG  H++A T   ++F++GRG  G+LG+G  V    P+ +    P
Sbjct: 321 VNFPEEQKVAQVACGWRHTLAFTEKKNVFAWGRGTSGQLGHGEIVDRNTPVIIDALSP 378



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+        WG  E GQ G      D   R++    VI    AP   
Sbjct: 16  VVLVSAGASHSVALLAGNVLCTWGRGEDGQLG----HGDAEDRLV--PTVISGFDAPG-- 67

Query: 136 VRQVAAGGTHSVVLTREGH-VWTWGQPWPP------GDIKQISVPVRVQGLEQVKL--IA 186
           +  V  G  H+   + + H V++WG  W        G+   +  P  V+ L+ +K+  +A
Sbjct: 68  ITSVICGADHTTAYSEDEHQVYSWG--WGDFGRLGHGNSTDVFTPQPVKALQGIKIKQLA 125

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+   G + +WG N+ GQLG G T+    P  +Q   G+++  IAAG  H+ A
Sbjct: 126 CGDSHCLAVTMAGEVLSWGRNQNGQLGLGTTEDSLLPQTIQAFEGISVKMIAAGAEHTAA 185

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ + VP+KV+ + G+ +V V+CG  H++ ++  G 
Sbjct: 186 VTEDGDIYGWGWGRYGNLGLG--DRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGS 243

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   VP  + A +++            ++ G RHT+A+ 
Sbjct: 244 LYTYGWSKYGQLGHGDF----EDHLVPHKVEALKDSS--------TSQISGGWRHTMALT 291



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           ++S+ S+  +G  + GQLG G+ E+      V+AL+      +  G R+++A+  DGK  
Sbjct: 238 VSSSGSLYTYGWSKYGQLGHGDFEDHLVPHKVEALKDSSTSQISGGWRHTMALTSDGKLY 297

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                               P+QVN     K+ Q A G  H LA  ++   +AWG    G
Sbjct: 298 GWGWNKFGQVGAGDNADHCSPAQVNFPEEQKVAQVACGWRHTLAFTEKKNVFAWGRGTSG 357

Query: 105 QCGE 108
           Q G 
Sbjct: 358 QLGH 361


>gi|168052711|ref|XP_001778783.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669789|gb|EDQ56369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 461

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 175/355 (49%), Gaps = 41/355 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE---- 62
           + +WG GEDGQLG G+ EER +  +V AL+  ++ SV  G+ ++ A+ +  KT       
Sbjct: 35  VCSWGRGEDGQLGHGDAEERHFPTIVSALDDCEISSVTCGADHTTALSNSTKTVYSWGWG 94

Query: 63  -------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         IP  + AL   ++ Q A G  HCLA+   G    WG N+ GQ G  
Sbjct: 95  DFGRLGHGNSSDLFIPQPIKALKGLEVKQIACGDSHCLAITTDGEVLGWGRNQNGQLG-- 152

Query: 110 PERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                  G     D++ P +      + V+ +AAG  H+  +T  G ++ WG  W     
Sbjct: 153 ------LGHT--EDVLTPHKLTAFEGVAVKMLAAGAEHTTAVTENGKLYGWG--WGRYGN 202

Query: 165 ---GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD +   VP +V  +  E +K++A G  H + + E G ++ +G ++YGQLG GD   
Sbjct: 203 LGLGDREDRLVPDQVAAVAGELMKMVACGWRHTICVAESGNMYTFGWSKYGQLGHGDFAD 262

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P  VQ L    +  I  G  H+ AL  DG +YGWG  + G++G G+ +  S   PQ 
Sbjct: 263 HLIPHQVQALKSKKIQAITGGWRHTFALDSDGRLYGWGWNKFGQVGCGNTEDQSS--PQL 320

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           V  L  + +  V CG  H++A+T  G+++S+GRG  G+LG+G  V    P  + I
Sbjct: 321 VKGLQDQVVTVVQCGWRHTLAMTDRGNVYSWGRGTSGQLGHGDTVDRSTPKRIEI 375



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 128/254 (50%), Gaps = 17/254 (6%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++  + G  H +A+       +WG  E GQ G         G    R            
Sbjct: 15  QVLALSAGASHSVALLSGDLVCSWGRGEDGQLGH--------GDAEERHFPTIVSALDDC 66

Query: 135 IVRQVAAGGTHSVVL---TREGHVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIAV 187
            +  V  G  H+  L   T+  + W WG       G+   + +P  ++ L+  +VK IA 
Sbjct: 67  EISSVTCGADHTTALSNSTKTVYSWGWGDFGRLGHGNSSDLFIPQPIKALKGLEVKQIAC 126

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+  DG +  WG N+ GQLG G T+    P  +    G+ +  +AAG  H+TA+
Sbjct: 127 GDSHCLAITTDGEVLGWGRNQNGQLGLGHTEDVLTPHKLTAFEGVAVKMLAAGAEHTTAV 186

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T++G++YGWG G +G LG G  D+  ++VP +V  +AGE +  V+CG  H++ +   G++
Sbjct: 187 TENGKLYGWGWGRYGNLGLG--DREDRLVPDQVAAVAGELMKMVACGWRHTICVAESGNM 244

Query: 308 FSFGRGDHGRLGYG 321
           ++FG   +G+LG+G
Sbjct: 245 YTFGWSKYGQLGHG 258



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GA 189
           V  ++AG +HSV L     V +WG+        GD ++   P  V  L+  ++ +V  GA
Sbjct: 16  VLALSAGASHSVALLSGDLVCSWGRGEDGQLGHGDAEERHFPTIVSALDDCEISSVTCGA 75

Query: 190 FHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            H  AL      +++WG  ++G+LG G++     P P++ L GL +  IA G  H  A+T
Sbjct: 76  DHTTALSNSTKTVYSWGWGDFGRLGHGNSSDLFIPQPIKALKGLEVKQIACGDSHCLAIT 135

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DGEV GWGR ++G+LG G  +    + P K+    G  +  ++ G  H+ A+T +G ++
Sbjct: 136 TDGEVLGWGRNQNGQLGLGHTEDV--LTPHKLTAFEGVAVKMLAAGAEHTTAVTENGKLY 193

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +G G +G LG G +    +   VP  + A   AG+      + K+VACG RHT+ + E
Sbjct: 194 GWGWGRYGNLGLGDR----EDRLVPDQVAAV--AGE------LMKMVACGWRHTICVAE 240



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 16/124 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           +A + ++  +G  + GQLG G+  +      V+AL+  K++++  G R++ A+  DG+  
Sbjct: 238 VAESGNMYTFGWSKYGQLGHGDFADHLIPHQVQALKSKKIQAITGGWRHTFALDSDGRLY 297

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T+ ++ P  V  L +  +     G  H LA+ D+G  Y+WG    G
Sbjct: 298 GWGWNKFGQVGCGNTEDQSSPQLVKGLQDQVVTVVQCGWRHTLAMTDRGNVYSWGRGTSG 357

Query: 105 QCGE 108
           Q G 
Sbjct: 358 QLGH 361


>gi|379318631|pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
 gi|379318632|pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
 gi|379318633|pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
 gi|379318634|pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
           Protein Uvr8
          Length = 370

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 43/357 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S   + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G   
Sbjct: 19  LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 78

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 79  YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN 138

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G       DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 139 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186

Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 246

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD +    P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ 
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 306

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           S   P +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 307 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 31/301 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           K++  + G  H +A+       +WG  E GQ G  + E +    ++   D          
Sbjct: 5   KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 55

Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
             +  V  G  H+V  ++ G   + W WG       G+   +  P+ ++ L   ++K IA
Sbjct: 56  HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 175

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+CG  H+++++  G 
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   +P  + A  N+            ++ G RHT+A+ 
Sbjct: 234 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGFRHTMALT 281

Query: 367 E 367
            
Sbjct: 282 S 282



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 21/242 (8%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKL 184
           AP   V  ++AG +HSV L     V +WG+        GD +    P ++  L+  Q+  
Sbjct: 1   APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 60

Query: 185 IAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           +  GA H +A  + G  +++WG  ++G+LG G++     P+P++ L G+ +  IA G  H
Sbjct: 61  VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSH 120

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+ G  H+ A+T 
Sbjct: 121 CLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++ +G G +G LG G +     P  V          G+ +       +VACG RHT+
Sbjct: 179 DGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------SMVACGWRHTI 226

Query: 364 AI 365
           ++
Sbjct: 227 SV 228



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 34/248 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 130 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 189

Query: 60  --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +T+  +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 190 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 249

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 250 ----------LEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGV 299

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359

Query: 223 PIPVQGLS 230
           P  ++ LS
Sbjct: 360 PKIIEALS 367


>gi|297797389|ref|XP_002866579.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata]
 gi|297312414|gb|EFH42838.1| UVB-resistance 8 [Arabidopsis lyrata subsp. lyrata]
          Length = 440

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 43/351 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G         
Sbjct: 36  VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 95

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ GQ G  
Sbjct: 96  DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 153

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  W     
Sbjct: 154 ---LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 203

Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG GD + 
Sbjct: 204 LGLGDRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 263

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
              P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ S   P 
Sbjct: 264 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PV 320

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 321 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 371



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 156/313 (49%), Gaps = 32/313 (10%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRIL 120
           E    +V A   T ++ +A G  H +A+       +WG  E GQ G  + E +    ++ 
Sbjct: 4   EMAADEVTAPPRTVLIISA-GASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS 62

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVR 175
             D            +  V  G  H+V  ++ G   + W WG       G+   +  P+ 
Sbjct: 63  ALD---------GHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP 113

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           ++ L   ++K IA G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ 
Sbjct: 114 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 173

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  +AAG  H+ A+T+DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+C
Sbjct: 174 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG--DRNDRLVPERVTSAGGEKMSMVAC 231

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+++++  G ++++G   +G+LG+G      +   +P  + A  N+           
Sbjct: 232 GWRHTISVSYSGALYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FIS 279

Query: 354 LVACGGRHTLAIV 366
            ++ G RHT+A+ 
Sbjct: 280 QISGGWRHTMALT 292



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 38/293 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S   + +WG G+ G+LG GN+ +      +KAL   +++ +  G  + LA+  +G+    
Sbjct: 85  SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 144

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T+   +P ++ A    +I   A G  H  AV + G  Y WG   YG  
Sbjct: 145 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 204

Query: 107 GEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G             R D ++P+R   A    +  VA G  H++ ++  G ++T+G  W  
Sbjct: 205 GLGD----------RNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYG--WSK 252

Query: 165 ------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD++   +P +++ L    +  I+ G  H +AL  DG L+ WG N++GQ+G G+
Sbjct: 253 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 312

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              +  P+ V+      +V ++ G  H+ A+T+   V+ WGRG +G+LG G++
Sbjct: 313 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 365



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 120/258 (46%), Gaps = 38/258 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 141 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 200

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 201 YGNLGLGDRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 260

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 261 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 310

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 370

Query: 223 PIPVQGLSGLTLVDIAAG 240
           P  ++ LS    VD A+G
Sbjct: 371 PKIIEALS----VDGASG 384


>gi|383280368|pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
           Resistance Locus 8)
 gi|383280369|pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
           Resistance Locus 8)
          Length = 406

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 43/351 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G         
Sbjct: 37  VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 96

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ GQ G  
Sbjct: 97  DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 154

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  W     
Sbjct: 155 ---LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 204

Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG GD + 
Sbjct: 205 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 264

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
              P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ S   P 
Sbjct: 265 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PV 321

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 322 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 372



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 31/300 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           K++  + G  H +A+       +WG  E GQ G  + E +    ++   D          
Sbjct: 17  KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 67

Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
             +  V  G  H+V  ++ G   + W WG       G+   +  P+ ++ L   ++K IA
Sbjct: 68  HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 127

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 128 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 187

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+CG  H+++++  G 
Sbjct: 188 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   +P  + A  N+            ++ G RHT+A+ 
Sbjct: 246 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGWRHTMALT 293



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 21/253 (8%)

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVR 175
           +  D+   +  AP   V  ++AG +HSV L     V +WG+        GD +    P +
Sbjct: 2   MAEDMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ 61

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           +  L+  Q+  +  GA H +A  + G  +++WG  ++G+LG G++     P+P++ L G+
Sbjct: 62  LSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 121

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  IA G  H  A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+
Sbjct: 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVA 179

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  H+ A+T DG ++ +G G +G LG G +     P  V          G+ +      
Sbjct: 180 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------ 227

Query: 353 KLVACGGRHTLAI 365
            +VACG RHT+++
Sbjct: 228 SMVACGWRHTISV 240



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 38/293 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S   + +WG G+ G+LG GN+ +      +KAL   +++ +  G  + LA+  +G+    
Sbjct: 86  SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 145

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T+   +P ++ A    +I   A G  H  AV + G  Y WG   YG  
Sbjct: 146 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 205

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G             R D ++P+R        +  VA G  H++ ++  G ++T+G  W  
Sbjct: 206 GLGD----------RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG--WSK 253

Query: 165 ------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD++   +P +++ L    +  I+ G  H +AL  DG L+ WG N++GQ+G G+
Sbjct: 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              +  P+ V+      +V ++ G  H+ A+T+   V+ WGRG +G+LG G++
Sbjct: 314 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 366



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 38/258 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 142 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 201

Query: 60  --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +T+  +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 202 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 261

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 262 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 311

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 312 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 371

Query: 223 PIPVQGLSGLTLVDIAAG 240
           P  ++ LS    VD A+G
Sbjct: 372 PKIIEALS----VDGASG 385


>gi|147782117|emb|CAN67581.1| hypothetical protein VITISV_010346 [Vitis vinifera]
          Length = 423

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 31/344 (9%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE---- 62
           + +WG GEDGQLG G+ E+R     + AL+ ++V SV  G+ ++ A  +           
Sbjct: 37  VCSWGRGEDGQLGHGDAEDRLSPTYLSALDGHEVVSVTCGADHTTAYSESFTQVYSWGCD 96

Query: 63  -NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
              P  + AL   +I Q A G  HCLAV   G   +WG N+ GQ G              
Sbjct: 97  LFTPQPIKALHGLRIKQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTE--------- 147

Query: 122 RDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDIKQISVP 173
            D ++PQ+      + V+ VAAG  H+  +T +G ++ WG  W        GD     VP
Sbjct: 148 -DSLVPQKIQAFQGVSVKMVAAGAEHTAAVTEDGELYGWG--WGRYGNLGLGDRNDRLVP 204

Query: 174 VRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            +V  +E VK++  A G  H +++   G L+ +G ++YGQLG GD +    P  ++ L  
Sbjct: 205 EKVSTVEGVKMVKVACGWRHTISVSSSGGLYTYGWSKYGQLGHGDFEDHLTPHKLEALQE 264

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQ 290
             + +I+ G  H+ ALT DG++YGWG  + G++G GDN D  S   P +V     + +V 
Sbjct: 265 NLISEISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNVDHCS---PVQVKFPHEQKVVH 321

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           +SCG  H++A+T   ++FS+GRG +G+LG+G  +    P  + +
Sbjct: 322 ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESIDRNIPKMIEV 365



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 133/256 (51%), Gaps = 33/256 (12%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++  + G  H +A+       +WG  E GQ G                     R +P  
Sbjct: 17  RVLLISAGASHSVALLXGNVVCSWGRGEDGQLGHGDAE---------------DRLSPTY 61

Query: 135 I-------VRQVAAGGTHSVVLTRE-GHVWTWG-QPWPPGDIKQISVPVRVQGLEQVKLI 185
           +       V  V  G  H+   +     V++WG   + P  IK +       GL ++K I
Sbjct: 62  LSALDGHEVVSVTCGADHTTAYSESFTQVYSWGCDLFTPQPIKAL------HGL-RIKQI 114

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H LA+  DG + +WG N+ GQLG G T+    P  +Q   G+++  +AAG  H+ 
Sbjct: 115 ACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSVKMVAAGAEHTA 174

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+T+DGE+YGWG G +G LG G  D++ ++VP+KV+ + G  +V+V+CG  H+++++  G
Sbjct: 175 AVTEDGELYGWGWGRYGNLGLG--DRNDRLVPEKVSTVEGVKMVKVACGWRHTISVSSSG 232

Query: 306 HIFSFGRGDHGRLGYG 321
            ++++G   +G+LG+G
Sbjct: 233 GLYTYGWSKYGQLGHG 248



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 109/242 (45%), Gaps = 60/242 (24%)

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G +  +S PVR     +V LI+ GA H++AL     + +WG  E GQLG GD + R  P 
Sbjct: 6   GTMSXVSAPVR-----RVLLISAGASHSVALLXGNVVCSWGRGEDGQLGHGDAEDRLSPT 60

Query: 225 -----------------------------------------PVQGLSGLTLVDIAAGGWH 243
                                                    P++ L GL +  IA G  H
Sbjct: 61  YLSALDGHEVVSVTCGADHTTAYSESFTQVYSWGCDLFTPQPIKALHGLRIKQIACGDSH 120

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T DGEV  WGR ++G+LG G  + S  +VPQK+    G  +  V+ G  H+ A+T 
Sbjct: 121 CLAVTMDGEVQSWGRNQNGQLGLGTTEDS--LVPQKIQAFQGVSVKMVAAGAEHTAAVTE 178

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++ +G G +G LG G +     P +V             V+   + K VACG RHT+
Sbjct: 179 DGELYGWGWGRYGNLGLGDRNDRLVPEKVST-----------VEGVKMVK-VACGWRHTI 226

Query: 364 AI 365
           ++
Sbjct: 227 SV 228



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S+  +  +G  + GQLG G+ E+      ++AL+   +  +  G R+++A+  DGK  
Sbjct: 228 VSSSGGLYTYGWSKYGQLGHGDFEDHLTPHKLEALQENLISEISGGWRHTMALTSDGKLY 287

Query: 61  ------------TENI----PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        +N+    P QV      K+V  + G  H LAV ++   ++WG    G
Sbjct: 288 GWGWNKFGQVGVGDNVDHCSPVQVKFPHEQKVVHISCGWRHTLAVTERQNVFSWGRGTNG 347

Query: 105 QCGE 108
           Q G 
Sbjct: 348 QLGH 351


>gi|15237540|ref|NP_201191.1| protein UV-B resistance 8 [Arabidopsis thaliana]
 gi|10177674|dbj|BAB11034.1| UVB-resistance protein UVR8 [Arabidopsis thaliana]
 gi|21928123|gb|AAM78089.1| AT5g63860/MGI19_6 [Arabidopsis thaliana]
 gi|23308399|gb|AAN18169.1| At5g63860/MGI19_6 [Arabidopsis thaliana]
 gi|332010422|gb|AED97805.1| protein UV-B resistance 8 [Arabidopsis thaliana]
          Length = 440

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 43/351 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G         
Sbjct: 36  VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 95

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ GQ G  
Sbjct: 96  DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 153

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  W     
Sbjct: 154 ---LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 203

Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG GD + 
Sbjct: 204 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 263

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
              P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ S   P 
Sbjct: 264 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PV 320

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 321 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 371



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 31/300 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           K++  + G  H +A+       +WG  E GQ G  + E +    ++   D          
Sbjct: 16  KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 66

Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
             +  V  G  H+V  ++ G   + W WG       G+   +  P+ ++ L   ++K IA
Sbjct: 67  HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 126

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 186

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+CG  H+++++  G 
Sbjct: 187 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 244

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   +P  + A  N+            ++ G RHT+A+ 
Sbjct: 245 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGWRHTMALT 292



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 21/253 (8%)

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVR 175
           +  D+   +  AP   V  ++AG +HSV L     V +WG+        GD +    P +
Sbjct: 1   MAEDMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ 60

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           +  L+  Q+  +  GA H +A  + G  +++WG  ++G+LG G++     P+P++ L G+
Sbjct: 61  LSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 120

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  IA G  H  A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+
Sbjct: 121 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVA 178

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  H+ A+T DG ++ +G G +G LG G +     P  V          G+ +      
Sbjct: 179 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------ 226

Query: 353 KLVACGGRHTLAI 365
            +VACG RHT+++
Sbjct: 227 SMVACGWRHTISV 239



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 38/293 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S   + +WG G+ G+LG GN+ +      +KAL   +++ +  G  + LA+  +G+    
Sbjct: 85  SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 144

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T+   +P ++ A    +I   A G  H  AV + G  Y WG   YG  
Sbjct: 145 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 204

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G             R D ++P+R        +  VA G  H++ ++  G ++T+G  W  
Sbjct: 205 GLGD----------RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG--WSK 252

Query: 165 ------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD++   +P +++ L    +  I+ G  H +AL  DG L+ WG N++GQ+G G+
Sbjct: 253 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 312

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              +  P+ V+      +V ++ G  H+ A+T+   V+ WGRG +G+LG G++
Sbjct: 313 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 365



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 38/258 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 141 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 200

Query: 60  --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +T+  +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 201 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 260

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 261 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 310

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 370

Query: 223 PIPVQGLSGLTLVDIAAG 240
           P  ++ LS    VD A+G
Sbjct: 371 PKIIEALS----VDGASG 384


>gi|5478530|gb|AAD43920.1|AF130441_1 UVB-resistance protein UVR8 [Arabidopsis thaliana]
          Length = 440

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 43/351 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G         
Sbjct: 36  VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 95

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ GQ G  
Sbjct: 96  DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 153

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  W     
Sbjct: 154 ---LGDT-----EDSLVPQKIQAFEGIPIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 203

Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG GD + 
Sbjct: 204 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 263

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
              P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ S   P 
Sbjct: 264 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PV 320

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 321 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 371



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 31/300 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           K++  + G  H +A+       +WG  E GQ G  + E +    ++   D          
Sbjct: 16  KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 66

Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
             +  V  G  H+V  ++ G   + W WG       G+   +  P+ ++ L   ++K IA
Sbjct: 67  HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 126

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIPIKMVAAGAEHTAA 186

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+CG  H+++++  G 
Sbjct: 187 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 244

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   +P  + A  N+            ++ G RHT+A+ 
Sbjct: 245 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGWRHTMALT 292



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 21/253 (8%)

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVR 175
           +  D+   +  AP   V  ++AG +HSV L     V +WG+        GD +    P +
Sbjct: 1   MAEDMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ 60

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           +  L+  Q+  +  GA H +A  + G  +++WG  ++G+LG G++     P+P++ L G+
Sbjct: 61  LSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 120

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  IA G  H  A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+
Sbjct: 121 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIPIKMVA 178

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  H+ A+T DG ++ +G G +G LG G +     P  V          G+ +      
Sbjct: 179 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------ 226

Query: 353 KLVACGGRHTLAI 365
            +VACG RHT+++
Sbjct: 227 SMVACGWRHTISV 239



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 138/293 (47%), Gaps = 38/293 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S   + +WG G+ G+LG GN+ +      +KAL   +++ +  G  + LA+  +G+    
Sbjct: 85  SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 144

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T+   +P ++ A     I   A G  H  AV + G  Y WG   YG  
Sbjct: 145 GRNQNGQLGLGDTEDSLVPQKIQAFEGIPIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 204

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G             R D ++P+R        +  VA G  H++ ++  G ++T+G  W  
Sbjct: 205 GLGD----------RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG--WSK 252

Query: 165 ------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD++   +P +++ L    +  I+ G  H +AL  DG L+ WG N++GQ+G G+
Sbjct: 253 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 312

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              +  P+ V+      +V ++ G  H+ A+T+   V+ WGRG +G+LG G++
Sbjct: 313 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 365



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 38/258 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E   ++ V AG+ ++ A+ +DG         
Sbjct: 141 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIPIKMVAAGAEHTAAVTEDGDLYGWGWGR 200

Query: 60  --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +T+  +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 201 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 260

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 261 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 310

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 311 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 370

Query: 223 PIPVQGLSGLTLVDIAAG 240
           P  ++ LS    VD A+G
Sbjct: 371 PKIIEALS----VDGASG 384


>gi|449457319|ref|XP_004146396.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis
           sativus]
          Length = 438

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 185/358 (51%), Gaps = 43/358 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
           + S   + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ ++ A        
Sbjct: 23  LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSVARTEV 82

Query: 55  ------DDGKTKTEN-----IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                 D G+    N      P  + AL   KI Q A G  HCLAV  +G   +WG N+ 
Sbjct: 83  YSWGWGDFGRLGHGNSSDLLTPKPIKALHGLKIRQIACGDSHCLAVTMEGEVQSWGRNQN 142

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 143 GQLGLGTTE----------DSLVPQKIQAFEGISIKMVAAGAEHTAAVTEDGELFGWG-- 190

Query: 162 WPP------GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP +V  ++  ++ ++A G  H +++   G L+ +G ++YGQLG
Sbjct: 191 WGRYGNLGLGDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLG 250

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD + R  P  ++ L G  +  I+ G  H+ ALT DG++YGWG  + G++G GDN D  
Sbjct: 251 HGDFEDRLVPHRLEALRGDNISQISGGWRHTMALTTDGKLYGWGWNKFGQVGAGDNIDHC 310

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           S   P ++     + ++Q+SCG  H++A+T   ++FS+GRG +G+LG+G  V    PM
Sbjct: 311 S---PIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNGQLGHGESVDRNTPM 365



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 156/298 (52%), Gaps = 27/298 (9%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           +++  + G  H +A+       +WG  E GQ G  + E +    ++   D         +
Sbjct: 9   RVLFISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD-------GHE 61

Query: 134 LIVRQVAAGGTHSVVLTR-EGHVWTWGQ--PWPPGDIKQISVPVRVQGLEQVKL--IAVG 188
           ++     A  T +  + R E + W WG       G+   +  P  ++ L  +K+  IA G
Sbjct: 62  IVSVTCGADHTTAYSVARTEVYSWGWGDFGRLGHGNSSDLLTPKPIKALHGLKIRQIACG 121

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+  +G + +WG N+ GQLG G T+    P  +Q   G+++  +AAG  H+ A+T
Sbjct: 122 DSHCLAVTMEGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFEGISIKMVAAGAEHTAAVT 181

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           +DGE++GWG G +G LG G  D++ ++VPQKV+ + G+ +V V+CG  H+++++  G ++
Sbjct: 182 EDGELFGWGWGRYGNLGLG--DRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLY 239

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++G   +G+LG+G      +   VP  + A R  GD + +      ++ G RHT+A+ 
Sbjct: 240 TYGWSKYGQLGHGDF----EDRLVPHRLEALR--GDNISQ------ISGGWRHTMALT 285



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 107/200 (53%), Gaps = 20/200 (10%)

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           + + PVR     +V  I+ GA H++AL     + +WG  E GQLG GD + R  P  +  
Sbjct: 2   EATSPVR-----RVLFISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA 56

Query: 229 LSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           L G  +V +  G  H+TA +    EVY WG G+ GRLG G++  S  + P+ +  L G  
Sbjct: 57  LDGHEIVSVTCGADHTTAYSVARTEVYSWGWGDFGRLGHGNS--SDLLTPKPIKALHGLK 114

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           I Q++CG +H +A+T +G + S+GR  +G+LG G   TT   +     +P    A +G+ 
Sbjct: 115 IRQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG---TTEDSL-----VPQKIQAFEGIS 166

Query: 348 RRWIAKLVACGGRHTLAIVE 367
                K+VA G  HT A+ E
Sbjct: 167 ----IKMVAAGAEHTAAVTE 182



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 38/250 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G  E+      ++A E   ++ V AG+ ++ A+ +DG+        
Sbjct: 134 VQSWGRNQNGQLGLGTTEDSLVPQKIQAFEGISIKMVAAGAEHTAAVTEDGELFGWGWGR 193

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V+++   K+V  A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 194 YGNLGLGDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGHGD 253

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGHVWTWGQPWP----- 163
                       D ++P R        + Q++ G  H++ LT +G ++ WG  W      
Sbjct: 254 ----------FEDRLVPHRLEALRGDNISQISGGWRHTMALTTDGKLYGWG--WNKFGQV 301

Query: 164 -PGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             GD      P++++  +  K+I +  G  H LA+ +   +++WG    GQLG G++  R
Sbjct: 302 GAGDNIDHCSPIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNGQLGHGESVDR 361

Query: 221 SQPIPVQGLS 230
           + P+ ++ LS
Sbjct: 362 NTPMILEALS 371


>gi|219125443|ref|XP_002182991.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405785|gb|EEC45727.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 341

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 178/353 (50%), Gaps = 39/353 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG GEDGQLG+G+  +++    V AL    V+ +  GS +++ +  DG+  T    
Sbjct: 1   AVFTWGRGEDGQLGLGDTSDQDEPTYVDALRGVGVQQIACGSGHTVVLTTDGEVFTWGRG 60

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       + +P    +L+   ++Q   G +H  AV   G  Y WGG  YG+ G  
Sbjct: 61  DDGRLGHGDNGWKYVPRMTQSLAGQIVLQVTCGSYHTAAVTGNGDLYTWGGGMYGKLGHG 120

Query: 110 PERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
            E    T          P+R    +   V Q+A G  H+ ++T  G ++TWG        
Sbjct: 121 DEAGHAT----------PKRVEALVGATVAQIACGSRHTAIVTASGALYTWGDKENGVAG 170

Query: 164 PGDIK-QISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            G+ +    +P  ++ +  ++V  I+   FH   + + G L+ WG  ++G+LG    +  
Sbjct: 171 HGETEGHQYLPRLLESMAAKRVAQISACGFHTAIVTDAGELFTWGEGKFGRLGHMSERNC 230

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  V  + G     ++ GG+H+  +++DG +Y +G GEHG+LG   ND+ +KM P  V
Sbjct: 231 HSPTIVDYMVGKKPRQVSCGGFHTAVVSEDGRLYTFGGGEHGQLGH--NDRVNKMTPTFV 288

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY--GRKVTTGQPME 331
             L G  + Q++CG +HSVALT  G ++++G GDHG+LG+  GRKV   Q +E
Sbjct: 289 EALDGMFVSQITCGWSHSVALTVKGLVYTWGNGDHGKLGHGNGRKVAVPQAVE 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 21/239 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGA 189
           V+Q+A G  H+VVLT +G V+TWG+        GD     VP   Q L  + V  +  G+
Sbjct: 35  VQQIACGSGHTVVLTTDGEVFTWGRGDDGRLGHGDNGWKYVPRMTQSLAGQIVLQVTCGS 94

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           +H  A+  +G L+ WG   YG+LG GD    + P  V+ L G T+  IA G  H+  +T 
Sbjct: 95  YHTAAVTGNGDLYTWGGGMYGKLGHGDEAGHATPKRVEALVGATVAQIACGSRHTAIVTA 154

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            G +Y WG  E+G  G G+ +   + +P+ +  +A + + Q+S  G H+  +T  G +F+
Sbjct: 155 SGALYTWGDKENGVAGHGETE-GHQYLPRLLESMAAKRVAQISACGFHTAIVTDAGELFT 213

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINI-PAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G G  GRLG+  +     P  V   +   PR              V+CGG HT  + E
Sbjct: 214 WGEGKFGRLGHMSERNCHSPTIVDYMVGKKPRQ-------------VSCGGFHTAVVSE 259



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 14/167 (8%)

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           A++ WG  E GQLG GDT  + +P  V  L G+ +  IA G  H+  LT DGEV+ WGRG
Sbjct: 1   AVFTWGRGEDGQLGLGDTSDQDEPTYVDALRGVGVQQIACGSGHTVVLTTDGEVFTWGRG 60

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           + GRLG GDN    K VP+    LAG+ ++QV+CG  H+ A+T +G ++++G G +G+LG
Sbjct: 61  DDGRLGHGDN--GWKYVPRMTQSLAGQIVLQVTCGSYHTAAVTGNGDLYTWGGGMYGKLG 118

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +G +     P  V   + A            +A+ +ACG RHT  + 
Sbjct: 119 HGDEAGHATPKRVEALVGAT-----------VAQ-IACGSRHTAIVT 153



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 49/233 (21%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + ++ ++  WG  E+G  G G  E  ++                                
Sbjct: 152 VTASGALYTWGDKENGVAGHGETEGHQY-------------------------------- 179

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
              +P  + +++  ++ Q +  G+H   V D G  + WG  ++G+ G   ER   +  I+
Sbjct: 180 ---LPRLLESMAAKRVAQISACGFHTAIVTDAGELFTWGEGKFGRLGHMSERNCHSPTIV 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRV 176
             D ++ ++       RQV+ GG H+ V++ +G ++T+G          D      P  V
Sbjct: 237 --DYMVGKK------PRQVSCGGFHTAVVSEDGRLYTFGGGEHGQLGHNDRVNKMTPTFV 288

Query: 177 QGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           + L+   V  I  G  H++AL   G ++ WGN ++G+LG G+ +  + P  V+
Sbjct: 289 EALDGMFVSQITCGWSHSVALTVKGLVYTWGNGDHGKLGHGNGRKVAVPQAVE 341


>gi|225438373|ref|XP_002274569.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis
           vinifera]
 gi|296082603|emb|CBI21608.3| unnamed protein product [Vitis vinifera]
          Length = 445

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 182/362 (50%), Gaps = 43/362 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G+ E+R     + AL+ ++V SV  G+ ++ A  +     
Sbjct: 31  LLSGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALDGHEVVSVTCGADHTTAYSESFTQV 90

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +     P  + AL   +I Q A G  HCLAV   G   +WG N+ 
Sbjct: 91  YSWGWGDFGRLGHGNSSDLFTPQPIKALHGLRIKQIACGDSHCLAVTMDGEVQSWGRNQN 150

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + V+ VAAG  H+  +T +G ++ WG  
Sbjct: 151 GQLGLGTTE----------DSLVPQKIQAFQGVSVKMVAAGAEHTAAVTEDGELYGWG-- 198

Query: 162 WPP------GDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP +V  +E VK++  A G  H +++   G L+ +G ++YGQLG
Sbjct: 199 WGRYGNLGLGDRNDRLVPEKVSTVEGVKMVKVACGWRHTISVSSSGGLYTYGWSKYGQLG 258

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD +    P  ++ L    + +I+ G  H+ ALT DG++YGWG  + G++G GDN D  
Sbjct: 259 HGDFEDHLTPHKLEALQENLISEISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNVDHC 318

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           S   P +V     + +V +SCG  H++A+T   ++FS+GRG +G+LG+G  +    P  +
Sbjct: 319 S---PVQVKFPHEQKVVHISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESIDRNIPKMI 375

Query: 333 PI 334
            +
Sbjct: 376 EV 377



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 40/310 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S T + +WG G+ G+LG GN+ +      +KAL   +++ +  G  + LA+  DG+    
Sbjct: 86  SFTQVYSWGWGDFGRLGHGNSSDLFTPQPIKALHGLRIKQIACGDSHCLAVTMDGEVQSW 145

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T+   +P ++ A     +   A G  H  AV + G  Y WG   YG  
Sbjct: 146 GRNQNGQLGLGTTEDSLVPQKIQAFQGVSVKMVAAGAEHTAAVTEDGELYGWGWGRYGNL 205

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G             R D ++P++ +    V+  +VA G  H++ ++  G ++T+G  W  
Sbjct: 206 GLGD----------RNDRLVPEKVSTVEGVKMVKVACGWRHTISVSSSGGLYTYG--WSK 253

Query: 165 ------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD +    P +++ L++  +  I+ G  H +AL  DG L+ WG N++GQ+G GD
Sbjct: 254 YGQLGHGDFEDHLTPHKLEALQENLISEISGGWRHTMALTSDGKLYGWGWNKFGQVGVGD 313

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
                 P+ V+      +V I+ G  H+ A+T+   V+ WGRG +G+LG G++    + +
Sbjct: 314 NVDHCSPVQVKFPHEQKVVHISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES--IDRNI 371

Query: 277 PQKVNLLAGE 286
           P+ + +L+ +
Sbjct: 372 PKMIEVLSAD 381



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 109/204 (53%), Gaps = 20/204 (9%)

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G + ++S PVR     +V LI+ GA H++AL     + +WG  E GQLG GD + R  P 
Sbjct: 6   GTMSEVSAPVR-----RVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDAEDRLSPT 60

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            +  L G  +V +  G  H+TA ++   +VY WG G+ GRLG G++  S    PQ +  L
Sbjct: 61  YLSALDGHEVVSVTCGADHTTAYSESFTQVYSWGWGDFGRLGHGNS--SDLFTPQPIKAL 118

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            G  I Q++CG +H +A+T DG + S+GR  +G+LG G    T +   VP  I A +   
Sbjct: 119 HGLRIKQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLG----TTEDSLVPQKIQAFQGVS 174

Query: 344 DGVDRRWIAKLVACGGRHTLAIVE 367
                    K+VA G  HT A+ E
Sbjct: 175 --------VKMVAAGAEHTAAVTE 190



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 21/248 (8%)

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
            + +  AP   V  ++AG +HSV L     V +WG+        GD +    P  +  L+
Sbjct: 7   TMSEVSAPVRRVLLISAGASHSVALLSGNVVCSWGRGEDGQLGHGDAEDRLSPTYLSALD 66

Query: 181 QVKLIAV--GAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
             ++++V  GA H  A  E    +++WG  ++G+LG G++     P P++ L GL +  I
Sbjct: 67  GHEVVSVTCGADHTTAYSESFTQVYSWGWGDFGRLGHGNSSDLFTPQPIKALHGLRIKQI 126

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A G  H  A+T DGEV  WGR ++G+LG G  + S  +VPQK+    G  +  V+ G  H
Sbjct: 127 ACGDSHCLAVTMDGEVQSWGRNQNGQLGLGTTEDS--LVPQKIQAFQGVSVKMVAAGAEH 184

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           + A+T DG ++ +G G +G LG G +     P +V             V+   + K VAC
Sbjct: 185 TAAVTEDGELYGWGWGRYGNLGLGDRNDRLVPEKVST-----------VEGVKMVK-VAC 232

Query: 358 GGRHTLAI 365
           G RHT+++
Sbjct: 233 GWRHTISV 240


>gi|357464765|ref|XP_003602664.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|358348400|ref|XP_003638235.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355491712|gb|AES72915.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355504170|gb|AES85373.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 439

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 180/356 (50%), Gaps = 42/356 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G+ ++R     + AL+  ++ SVV G+ ++LA  +     
Sbjct: 30  LISGNVVCSWGRGEDGQLGHGDTDDRLLPTQLSALDAQQIVSVVCGADHTLAYSESKVEV 89

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +    IP  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 90  YSWGWGDFGRLGHGNSSDLFIPQPIRALQGLRIKQIACGDSHCLAVTMEGEVQSWGRNQN 149

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + ++ VAAG  HSV +T  G ++ WG  
Sbjct: 150 GQLGLGTTE----------DSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWG-- 197

Query: 162 WPP------GDIKQISVPVRVQ-GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           W        GD     +P +V    +++ L+A G  H +++   G L+ +G ++YGQLG 
Sbjct: 198 WGRYGNLGLGDRNDRCIPEKVSVDCDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLGH 257

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSS 273
           GD +    P  +Q  S   +  ++ G  H+ ALT  G++YGWG  + G++G GDN D+ S
Sbjct: 258 GDCKDHLVPHKLQAFSDKLICQVSGGWRHTMALTTGGQLYGWGWNKFGQVGVGDNVDRCS 317

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
              P +V     + + Q+SCG  H++A+T   +++S+GRG +G+LG G  +    P
Sbjct: 318 ---PVQVKFPHDQKVAQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIGDTIDWNYP 370



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 127/241 (52%), Gaps = 22/241 (9%)

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV 187
           P   V  ++AGG+HSV L     V +WG+        GD     +P ++  L+  ++++V
Sbjct: 13  PPRRVLLISAGGSHSVALISGNVVCSWGRGEDGQLGHGDTDDRLLPTQLSALDAQQIVSV 72

Query: 188 --GAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
             GA H LA  E    +++WG  ++G+LG G++     P P++ L GL +  IA G  H 
Sbjct: 73  VCGADHTLAYSESKVEVYSWGWGDFGRLGHGNSSDLFIPQPIRALQGLRIKQIACGDSHC 132

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            A+T +GEV  WGR ++G+LG G  + S  +VPQK+    G  I  V+ G  HSVA+T +
Sbjct: 133 LAVTMEGEVQSWGRNQNGQLGLGTTEDS--LVPQKIQTFQGVPIKMVAAGAEHSVAITEN 190

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++ +G G +G LG G +     P +V ++                  LVACG RHT++
Sbjct: 191 GELYGWGWGRYGNLGLGDRNDRCIPEKVSVDCDK-------------MVLVACGWRHTIS 237

Query: 365 I 365
           +
Sbjct: 238 V 238



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 15/188 (7%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V LI+ G  H++AL     + +WG  E GQLG GDT  R  P  +  L    +V +  G
Sbjct: 16  RVLLISAGGSHSVALISGNVVCSWGRGEDGQLGHGDTDDRLLPTQLSALDAQQIVSVVCG 75

Query: 241 GWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             H+ A ++   EVY WG G+ GRLG G++  S   +PQ +  L G  I Q++CG +H +
Sbjct: 76  ADHTLAYSESKVEVYSWGWGDFGRLGHGNS--SDLFIPQPIRALQGLRIKQIACGDSHCL 133

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T +G + S+GR  +G+LG G    +  P ++      P             K+VA G 
Sbjct: 134 AVTMEGEVQSWGRNQNGQLGLGTTEDSLVPQKIQTFQGVP------------IKMVAAGA 181

Query: 360 RHTLAIVE 367
            H++AI E
Sbjct: 182 EHSVAITE 189



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G  E+      ++  +   ++ V AG+ +S+AI ++G+        
Sbjct: 141 VQSWGRNQNGQLGLGTTEDSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWGWGR 200

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        IP +V ++   K+V  A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 201 YGNLGLGDRNDRCIPEKV-SVDCDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLGHGD 259

Query: 111 ERKDDTGRILRRDIVIP---QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                      +D ++P   Q  + KLI  QV+ G  H++ LT  G ++ WG  W     
Sbjct: 260 ----------CKDHLVPHKLQAFSDKLIC-QVSGGWRHTMALTTGGQLYGWG--WNKFGQ 306

Query: 165 ---GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD      PV+V+    ++V  I+ G  H +A+ E   +++WG    GQLG GDT  
Sbjct: 307 VGVGDNVDRCSPVQVKFPHDQKVAQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIGDTID 366

Query: 220 RSQPIPVQGLS 230
            + P  ++ LS
Sbjct: 367 WNYPKIIEALS 377



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++ +S GG+HSVAL     + S+GRG+ G+LG+G       P ++             +D
Sbjct: 17  VLLISAGGSHSVALISGNVVCSWGRGEDGQLGHGDTDDRLLPTQL-----------SALD 65

Query: 348 RRWIAKLVACGGRHTLAIVEWQTE 371
            + I  +V CG  HTLA  E + E
Sbjct: 66  AQQIVSVV-CGADHTLAYSESKVE 88


>gi|379318635|pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
 gi|379318636|pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
          Length = 374

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 43/357 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S   + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G   
Sbjct: 19  LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 78

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 79  YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN 138

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G       DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 139 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186

Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 246

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD +    P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ 
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 306

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           S   P +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 307 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 31/301 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           K++  + G  H +A+       +WG  E GQ G  + E +    ++   D          
Sbjct: 5   KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 55

Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
             +  V  G  H+V  ++ G   + W WG       G+   +  P+ ++ L   ++K IA
Sbjct: 56  HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 175

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+CG  H+++++  G 
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   +P  + A  N+            ++ G RHT+A+ 
Sbjct: 234 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGWRHTMALT 281

Query: 367 E 367
            
Sbjct: 282 S 282



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 21/242 (8%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKL 184
           AP   V  ++AG +HSV L     V +WG+        GD +    P ++  L+  Q+  
Sbjct: 1   APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 60

Query: 185 IAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           +  GA H +A  + G  +++WG  ++G+LG G++     P+P++ L G+ +  IA G  H
Sbjct: 61  VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSH 120

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+ G  H+ A+T 
Sbjct: 121 CLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++ +G G +G LG G +     P  V          G+ +       +VACG RHT+
Sbjct: 179 DGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------SMVACGWRHTI 226

Query: 364 AI 365
           ++
Sbjct: 227 SV 228



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 38/258 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 130 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 189

Query: 60  --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +T+  +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 190 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 249

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 250 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 299

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359

Query: 223 PIPVQGLSGLTLVDIAAG 240
           P  ++ LS    VD A+G
Sbjct: 360 PKIIEALS----VDGASG 373


>gi|312282233|dbj|BAJ33982.1| unnamed protein product [Thellungiella halophila]
          Length = 440

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 188/352 (53%), Gaps = 45/352 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A  +           
Sbjct: 36  VCSWGRGEDGQLGHGDAEDRLSPTQLSALDDHQIVSVTCGADHTVAYSESRMEVYSWGWG 95

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ GQ G  
Sbjct: 96  DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 153

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  W     
Sbjct: 154 ---LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 203

Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG GD + 
Sbjct: 204 LGLGDRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 263

Query: 220 RSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVP 277
              P  ++ L G +++   +GGW H+ ALT DG++YGWG  + G++G G+N D+ S   P
Sbjct: 264 HLVPHKLEAL-GNSVISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---P 319

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            +V +   + +VQVSCG  H++A+T   ++F++GRG +G+LG G  +    P
Sbjct: 320 VQVRIPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESLDRNFP 371



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 21/238 (8%)

Query: 136 VRQVAAGGTHSVVLTR---EGHVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIAVG 188
           +  V  G  H+V  +    E + W WG       G+   +  P+ ++ L   ++K IA G
Sbjct: 69  IVSVTCGADHTVAYSESRMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 128

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A+T
Sbjct: 129 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVT 188

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           +DG++YGWG G +G LG G  D++ ++VP++V    GE +  V+CG  H+++++  G ++
Sbjct: 189 EDGDLYGWGWGRYGNLGLG--DRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALY 246

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++G   +G+LG+G      +   VP  + A  N+        +   ++ G RHT+A+ 
Sbjct: 247 TYGWSKYGQLGHGDL----EDHLVPHKLEALGNS--------VISQISGGWRHTMALT 292



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 21/253 (8%)

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVR 175
           +  ++V  +   P   V  ++AG +HSV L     V +WG+        GD +    P +
Sbjct: 1   MTEEMVADEVTPPPRRVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRLSPTQ 60

Query: 176 VQGLEQVKLIAV--GAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           +  L+  ++++V  GA H +A  E    +++WG  ++G+LG G++     P+P++ L G+
Sbjct: 61  LSALDDHQIVSVTCGADHTVAYSESRMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 120

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  IA G  H  A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+
Sbjct: 121 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVA 178

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  H+ A+T DG ++ +G G +G LG G +     P  V          G+ +      
Sbjct: 179 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLVPERV------TSAGGEKM------ 226

Query: 353 KLVACGGRHTLAI 365
            +VACG RHT+++
Sbjct: 227 SMVACGWRHTISV 239



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 38/293 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S   + +WG G+ G+LG GN+ +      +KAL   +++ +  G  + LA+  +G+    
Sbjct: 85  SRMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 144

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T+   +P ++ A    +I   A G  H  AV + G  Y WG   YG  
Sbjct: 145 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 204

Query: 107 GEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G             R D ++P+R   A    +  VA G  H++ ++  G ++T+G  W  
Sbjct: 205 GLGD----------RNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYG--WSK 252

Query: 165 ------GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD++   VP +++ L    +  I+ G  H +AL  DG L+ WG N++GQ+G G+
Sbjct: 253 YGQLGHGDLEDHLVPHKLEALGNSVISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 312

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              +  P+ V+      +V ++ G  H+ A+T+   V+ WGRG +G+LG G++
Sbjct: 313 NLDQCSPVQVRIPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 365



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 38/258 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 141 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 200

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V +    K+   A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 201 YGNLGLGDRNDRLVPERVTSAGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 260

Query: 111 ERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D ++P +       ++ Q++ G  H++ LT +G ++ WG     Q   
Sbjct: 261 ----------LEDHLVPHKLEALGNSVISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 310

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR+   ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 311 GNNLDQCSPVQVRIPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESLDRNF 370

Query: 223 PIPVQGLSGLTLVDIAAG 240
           P  ++ LS    VD A+G
Sbjct: 371 PKIIEALS----VDGASG 384


>gi|222528951|ref|YP_002572833.1| chromosome condensation regulator RCC1 [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455798|gb|ACM60060.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 743

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 49/378 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           S+  WG    GQ    ++  R++   VK  E   + ++ AG   SLA+  DG        
Sbjct: 112 SVWIWGHTNYGQRK--SDVYRDFTTPVKVKELKNIVAIAAGWDFSLAVGSDGSVWAWGIN 169

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     K   +P +V  L +  +V  + G +H LA+   G  ++WG NE G+ G  
Sbjct: 170 NHGELGIGSLKPSAVPVKVKGLKD--VVAVSAGLYHSLALKRDGTVWSWGYNEDGELGNR 227

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDI 167
           P  +D T       + +P R      V  ++AGG HS+ L ++G VW WG       G I
Sbjct: 228 PT-EDYT-------VSVPVRVKGLSDVIAISAGGFHSIALNKDGAVWIWGGGIIEKNGKI 279

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
               +PVR++ L +V  IA G  H++AL++DG +W WG+N YG LG+   +     + V+
Sbjct: 280 DNSYIPVRIRWLNKVVAIAAGYRHSIALKDDGTVWVWGHNSYGVLGSNVGEHSFLLVQVK 339

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL    +V +AAG  HS ALT +G ++ WG    G+LG  +N+  S  +P KV  L  ++
Sbjct: 340 GLK--NVVAVAAGRLHSVALTKNGTIWAWGNNAFGQLG-RENNSFSLNLPYKVKWL--DN 394

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +V ++ GG+H++A+ RDG ++S+G  + G+LG G    T +   +P  +    N      
Sbjct: 395 VVAIATGGSHTLAIKRDGTVWSWGANNKGQLGNG----TYKSSYIPTCVKGLNN------ 444

Query: 348 RRWIAKLVACGGRHTLAI 365
               A LV  G +H+LA+
Sbjct: 445 ----AVLVEAGSQHSLAV 458



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 175/375 (46%), Gaps = 86/375 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAICDDGKT 59
           +I AWG+   GQLG  NN             PYKV+      ++  G  ++LAI  DG  
Sbjct: 362 TIWAWGNNAFGQLGRENNS-------FSLNLPYKVKWLDNVVAIATGGSHTLAIKRDGTV 414

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           K+  IP+ V  L+N  +V+A  G  H LAVD  G  + WG  E 
Sbjct: 415 WSWGANNKGQLGNGTYKSSYIPTCVKGLNNAVLVEA--GSQHSLAVDKDGTVWVWGFIE- 471

Query: 104 GQCGEEPERKD----------------------DTGRILRRDIVI--------------- 126
                E   KD                      D   +LR+D  I               
Sbjct: 472 -SVWSEKNTKDILSPLPIKIGKLNDITEIAGGLDYILVLRKDGNIWGCGNDFYFRKFTDS 530

Query: 127 PQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV---PVRV 176
                 KLI       VR +AAG  HS+ +  +G VW+WG        K ++    PV++
Sbjct: 531 SVSSVTKLIRLDNIKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKKKYLNFSEKPVKI 590

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           +GL  V  +A G +H+LAL++DG +W+WG N YGQLG G  +    P+ V+GL+   +V 
Sbjct: 591 KGLSGVVKVAAGKYHSLALKKDGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLN--NVVA 648

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           IAAG +HS AL  DG V+ WG    G+LG  + + S+  VP KV  L  +++V ++ G T
Sbjct: 649 IAAGDYHSMALKKDGTVWVWGSNIRGQLGRRNIEFST--VPLKVEKL--DNVVAIAAGDT 704

Query: 297 HSVALTRDGHIFSFG 311
           HSVAL +DG ++ +G
Sbjct: 705 HSVALKKDGTVWVWG 719



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 156/306 (50%), Gaps = 42/306 (13%)

Query: 36  EPYKVRSVVAGSRNSLAICDDGKT----------------KTENIPSQVNALSNTKIVQA 79
           E +KV S  AGS ++LAI DDG                  K   IP +V  L +  +V  
Sbjct: 40  ENFKVISSGAGSLHTLAIKDDGTVWAWGYNGFGQLGNGTYKDSCIPVRVKGLKD--VVAV 97

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           + G +H LA+   G  + WG   YGQ      RK D    + RD   P +      +  +
Sbjct: 98  SAGTFHSLALKKDGSVWIWGHTNYGQ------RKSD----VYRDFTTPVKVKELKNIVAI 147

Query: 140 AAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           AAG   S+ +  +G VW WG         G +K  +VPV+V+GL+ V  ++ G +H+LAL
Sbjct: 148 AAGWDFSLAVGSDGSVWAWGINNHGELGIGSLKPSAVPVKVKGLKDVVAVSAGLYHSLAL 207

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPR--SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           + DG +W+WG NE G+LG   T+    S P+ V+GLS   ++ I+AGG+HS AL  DG V
Sbjct: 208 KRDGTVWSWGYNEDGELGNRPTEDYTVSVPVRVKGLS--DVIAISAGGFHSIALNKDGAV 265

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG G   + G  DN      +P ++  L    +V ++ G  HS+AL  DG ++ +G  
Sbjct: 266 WIWGGGIIEKNGKIDNS----YIPVRIRWL--NKVVAIAAGYRHSIALKDDGTVWVWGHN 319

Query: 314 DHGRLG 319
            +G LG
Sbjct: 320 SYGVLG 325



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 166/366 (45%), Gaps = 51/366 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++  WG    G LG    E    +  VK L+   V +V AG  +S+A+  +G        
Sbjct: 312 TVWVWGHNSYGVLGSNVGEHSFLLVQVKGLK--NVVAVAAGRLHSVALTKNGTIWAWGNN 369

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     + + N+P +V  L N  +V  A GG H LA+   G  ++WG N  GQ G 
Sbjct: 370 AFGQLGRENNSFSLNLPYKVKWLDN--VVAIATGGSHTLAIKRDGTVWSWGANNKGQLGN 427

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---QPWPPG 165
              +             IP           V AG  HS+ + ++G VW WG     W   
Sbjct: 428 GTYKSS----------YIPTCVKGLNNAVLVEAGSQHSLAVDKDGTVWVWGFIESVWSEK 477

Query: 166 DIKQI--SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           + K I   +P+++  L  +  IA G  + L L++DG +W  GN+ Y +  T D+   S  
Sbjct: 478 NTKDILSPLPIKIGKLNDITEIAGGLDYILVLRKDGNIWGCGNDFYFRKFT-DSSVSSVT 536

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR----GEHGRLGFGDNDKSSKMVPQK 279
             ++  +   +  IAAG +HS A+  DG V+ WG      +   L F +        P K
Sbjct: 537 KLIRLDNIKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKKKYLNFSEK-------PVK 589

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPA 338
           +  L+G  +V+V+ G  HS+AL +DG ++S+G   +G+LG G + T+  P+ V  +N   
Sbjct: 590 IKGLSG--VVKVAAGKYHSLALKKDGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLNNVV 647

Query: 339 PRNAGD 344
              AGD
Sbjct: 648 AIAAGD 653


>gi|255638076|gb|ACU19352.1| unknown [Glycine max]
          Length = 440

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 184/358 (51%), Gaps = 45/358 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G+ ++R     + AL+  ++ S+  G+ ++LA  +     
Sbjct: 28  LLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALDAQQIDSIACGADHTLAYSESRNEL 87

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +    IP  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 88  YSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIKQIACGDSHCLAVTMEGEVQSWGRNQN 147

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + ++ VAAG  HSV +T  G ++ WG  
Sbjct: 148 GQLGLGTSE----------DSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWG-- 195

Query: 162 WPP------GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     +P +V  ++  ++ ++A G  H +++   G L+ +G ++YGQLG
Sbjct: 196 WGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLG 255

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDN-DK 271
            G+ +    P  +Q LS   L+   +GGW HS ALT  G +YGWG  + G++G GDN D+
Sbjct: 256 HGNFEDSLVPQKLQALSD-KLISQVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNVDR 314

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            S   P +V     + +VQ+SCG  H++A+T   ++FS+GRG +G+LG+G  V    P
Sbjct: 315 CS---PVQVKFPHDQKVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTVDRNSP 369



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 21/250 (8%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           ++ +    +P   V  ++AG +H+V L     V +WG+        GD     +P  +  
Sbjct: 2   ELEVTAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSA 61

Query: 179 L--EQVKLIAVGAFHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           L  +Q+  IA GA H LA  E    L++WG  ++G+LG G++     P P+  L GL + 
Sbjct: 62  LDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIK 121

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H  A+T +GEV  WGR ++G+LG G ++ S  +VPQK+    G  I  V+ G 
Sbjct: 122 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSEDS--LVPQKIQTFQGVPIKMVAAGA 179

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HSVA+T +G ++ +G G +G LG G +     P +V             VD   +  +V
Sbjct: 180 EHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKV-----------SSVDCDKMV-MV 227

Query: 356 ACGGRHTLAI 365
           ACG RHT+++
Sbjct: 228 ACGWRHTISV 237



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 19/256 (7%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           ++++  + G  H +A+       +WG  E GQ G      D   R+L   +         
Sbjct: 13  SRVLLISAGASHTVALLSGNVVCSWGRGEDGQLG----HGDTDDRLLPTHL----SALDA 64

Query: 134 LIVRQVAAGGTHSVVLTR---EGHVWTWGQ--PWPPGDIKQISVP---VRVQGLEQVKLI 185
             +  +A G  H++  +    E + W WG       G+   + +P   + +QGL ++K I
Sbjct: 65  QQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGL-RIKQI 123

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H LA+  +G + +WG N+ GQLG G ++    P  +Q   G+ +  +AAG  HS 
Sbjct: 124 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSEDSLVPQKIQTFQGVPIKMVAAGAEHSV 183

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+T++GE+YGWG G +G LG G  D++ + +P+KV+ +  + +V V+CG  H+++++  G
Sbjct: 184 AITENGELYGWGWGRYGNLGLG--DRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLG 241

Query: 306 HIFSFGRGDHGRLGYG 321
            ++++G   +G+LG+G
Sbjct: 242 GLYTYGWSKYGQLGHG 257



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 15/188 (7%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V LI+ GA H +AL     + +WG  E GQLG GDT  R  P  +  L    +  IA G
Sbjct: 14  RVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALDAQQIDSIACG 73

Query: 241 GWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             H+ A ++   E+Y WG G+ GRLG G++  S  ++PQ +  L G  I Q++CG +H +
Sbjct: 74  ADHTLAYSESRNELYSWGWGDFGRLGHGNS--SDLLIPQPIIALQGLRIKQIACGDSHCL 131

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T +G + S+GR  +G+LG G    +  P ++      P             K+VA G 
Sbjct: 132 AVTMEGEVQSWGRNQNGQLGLGTSEDSLVPQKIQTFQGVP------------IKMVAAGA 179

Query: 360 RHTLAIVE 367
            H++AI E
Sbjct: 180 EHSVAITE 187



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 12/84 (14%)

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++ +S G +H+VAL     + S+GRG+ G+LG+G          +P ++ A       +D
Sbjct: 15  VLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDT----DDRLLPTHLSA-------LD 63

Query: 348 RRWIAKLVACGGRHTLAIVEWQTE 371
            + I   +ACG  HTLA  E + E
Sbjct: 64  AQQIDS-IACGADHTLAYSESRNE 86


>gi|115458498|ref|NP_001052849.1| Os04g0435700 [Oryza sativa Japonica Group]
 gi|32487442|emb|CAE02741.1| OSJNBa0006B20.1 [Oryza sativa Japonica Group]
 gi|113564420|dbj|BAF14763.1| Os04g0435700 [Oryza sativa Japonica Group]
 gi|125548381|gb|EAY94203.1| hypothetical protein OsI_15977 [Oryza sativa Indica Group]
 gi|125590466|gb|EAZ30816.1| hypothetical protein OsJ_14886 [Oryza sativa Japonica Group]
 gi|215704772|dbj|BAG94800.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 453

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 177/360 (49%), Gaps = 43/360 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--VRSVVAGSRNSLAICDD-------- 56
           + +WG GEDGQLG G+ E+R    V+   +     + SV+ G+ ++ A  +D        
Sbjct: 43  LCSWGRGEDGQLGHGDAEDRLVPTVLSGFDAAAPGITSVICGADHTTAYSEDEQQVYSWG 102

Query: 57  ---------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    G +     P  V AL   KI Q A G  HCLAV   G   +WG N+ GQ G
Sbjct: 103 WGDFGRLGHGNSSDVFTPQPVKALQGIKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLG 162

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP- 164
                          D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W   
Sbjct: 163 LG----------TTEDSLLPQKIQSFEGVCVKMIAAGAEHTAAVTEDGDLYGWG--WGRY 210

Query: 165 -----GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD     VP +V  +E  ++ LIA G  H + +   G+L+ +G ++YGQLG GD 
Sbjct: 211 GNLGLGDRNDRLVPEKVSSVEGEKMVLIACGWRHTITVSSSGSLYTYGWSKYGQLGHGDF 270

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           +    P  ++ L   ++  I+ G  H+ ALT DG++YGWG  + G++G GD D      P
Sbjct: 271 EDHLVPHKLEALKDSSISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDTD--DHCFP 328

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            +V     + + QV+CG  H++A T   ++FS+GRG  G+LG+G  V   +P+ +    P
Sbjct: 329 VQVKFPEDQKVAQVACGWRHTLAFTEKKNVFSWGRGTSGQLGHGEIVDRNKPVMIDALSP 388



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 31/300 (10%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+       +WG  E GQ G      D   R++   +      AP   
Sbjct: 24  VVLVSAGASHSVALLAGNVLCSWGRGEDGQLG----HGDAEDRLVPTVLSGFDAAAPG-- 77

Query: 136 VRQVAAGGTHSVVLTR-EGHVWTWGQPWPP------GDIKQISVPVRVQGLEQVKL--IA 186
           +  V  G  H+   +  E  V++WG  W        G+   +  P  V+ L+ +K+  IA
Sbjct: 78  ITSVICGADHTTAYSEDEQQVYSWG--WGDFGRLGHGNSSDVFTPQPVKALQGIKIKQIA 135

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+   G + +WG N+ GQLG G T+    P  +Q   G+ +  IAAG  H+ A
Sbjct: 136 CGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQSFEGVCVKMIAAGAEHTAA 195

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP+KV+ + GE +V ++CG  H++ ++  G 
Sbjct: 196 VTEDGDLYGWGWGRYGNLGLG--DRNDRLVPEKVSSVEGEKMVLIACGWRHTITVSSSGS 253

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   VP  + A +++            ++ G RHT+A+ 
Sbjct: 254 LYTYGWSKYGQLGHGDF----EDHLVPHKLEALKDSS--------ISQISGGWRHTMALT 301



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 23/246 (9%)

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--- 181
           R  P   V  V+AG +HSV L     + +WG+        GD +   VP  + G +    
Sbjct: 17  REDPPPAVVLVSAGASHSVALLAGNVLCSWGRGEDGQLGHGDAEDRLVPTVLSGFDAAAP 76

Query: 182 -VKLIAVGAFHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
            +  +  GA H  A  ED   +++WG  ++G+LG G++     P PV+ L G+ +  IA 
Sbjct: 77  GITSVICGADHTTAYSEDEQQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQGIKIKQIAC 136

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  H  A+T  GEV  WGR ++G+LG G  + S  ++PQK+    G  +  ++ G  H+ 
Sbjct: 137 GDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDS--LLPQKIQSFEGVCVKMIAAGAEHTA 194

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T DG ++ +G G +G LG G +     P +V  ++   +             L+ACG 
Sbjct: 195 AVTEDGDLYGWGWGRYGNLGLGDRNDRLVPEKVS-SVEGEKMV-----------LIACGW 242

Query: 360 RHTLAI 365
           RHT+ +
Sbjct: 243 RHTITV 248



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           ++S+ S+  +G  + GQLG G+ E+      ++AL+   +  +  G R+++A+  DGK  
Sbjct: 248 VSSSGSLYTYGWSKYGQLGHGDFEDHLVPHKLEALKDSSISQISGGWRHTMALTSDGKLY 307

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T     P QV    + K+ Q A G  H LA  ++   ++WG    G
Sbjct: 308 GWGWNKFGQVGVGDTDDHCFPVQVKFPEDQKVAQVACGWRHTLAFTEKKNVFSWGRGTSG 367

Query: 105 QCGE 108
           Q G 
Sbjct: 368 QLGH 371


>gi|356516391|ref|XP_003526878.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
           max]
          Length = 440

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 184/358 (51%), Gaps = 45/358 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G+ ++R     + AL+  ++ S+  G+ ++LA  +     
Sbjct: 28  LLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALDAQQIDSIACGADHTLAYSESRNEL 87

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +    IP  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 88  YSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIKQIACGDSHCLAVTMEGEVQSWGRNQN 147

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + ++ VAAG  HSV +T  G ++ WG  
Sbjct: 148 GQLGLGTSE----------DSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWG-- 195

Query: 162 WPP------GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     +P +V  ++  ++ ++A G  H +++   G L+ +G ++YGQLG
Sbjct: 196 WGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLG 255

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDN-DK 271
            G+ +    P  +Q LS   L+   +GGW HS ALT  G +YGWG  + G++G GDN D+
Sbjct: 256 HGNFEDSLVPQKLQALSD-KLISQVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNVDR 314

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            S   P +V     + +VQ+SCG  H++A+T   ++FS+GRG +G+LG+G  V    P
Sbjct: 315 CS---PVQVKFPHDQKVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTVDRNSP 369



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 21/250 (8%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           ++ +    +P   V  ++AG +H+V L     V +WG+        GD     +P  +  
Sbjct: 2   ELEVTAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSA 61

Query: 179 L--EQVKLIAVGAFHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           L  +Q+  IA GA H LA  E    L++WG  ++G+LG G++     P P+  L GL + 
Sbjct: 62  LDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIK 121

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H  A+T +GEV  WGR ++G+LG G ++ S  +VPQK+    G  I  V+ G 
Sbjct: 122 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSEDS--LVPQKIQTFQGVPIKMVAAGA 179

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HSVA+T +G ++ +G G +G LG G +     P +V             VD   +  +V
Sbjct: 180 EHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKV-----------SSVDCDKMV-MV 227

Query: 356 ACGGRHTLAI 365
           ACG RHT+++
Sbjct: 228 ACGWRHTISV 237



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 19/256 (7%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           ++++  + G  H +A+       +WG  E GQ G      D   R+L   +         
Sbjct: 13  SRVLLISAGASHTVALLSGNVVCSWGRGEDGQLG----HGDTDDRLLPTHL----SALDA 64

Query: 134 LIVRQVAAGGTHSVVLTR---EGHVWTWGQ--PWPPGDIKQISVP---VRVQGLEQVKLI 185
             +  +A G  H++  +    E + W WG       G+   + +P   + +QGL ++K I
Sbjct: 65  QQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGL-RIKQI 123

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H LA+  +G + +WG N+ GQLG G ++    P  +Q   G+ +  +AAG  HS 
Sbjct: 124 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSEDSLVPQKIQTFQGVPIKMVAAGAEHSV 183

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+T++GE+YGWG G +G LG G  D++ + +P+KV+ +  + +V V+CG  H+++++  G
Sbjct: 184 AITENGELYGWGWGRYGNLGLG--DRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLG 241

Query: 306 HIFSFGRGDHGRLGYG 321
            ++++G   +G+LG+G
Sbjct: 242 GLYTYGWSKYGQLGHG 257



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 15/188 (7%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V LI+ GA H +AL     + +WG  E GQLG GDT  R  P  +  L    +  IA G
Sbjct: 14  RVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALDAQQIDSIACG 73

Query: 241 GWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             H+ A ++   E+Y WG G+ GRLG G++  S  ++PQ +  L G  I Q++CG +H +
Sbjct: 74  ADHTLAYSESRNELYSWGWGDFGRLGHGNS--SDLLIPQPIIALQGLRIKQIACGDSHCL 131

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T +G + S+GR  +G+LG G    +  P ++      P             K+VA G 
Sbjct: 132 AVTMEGEVQSWGRNQNGQLGLGTSEDSLVPQKIQTFQGVP------------IKMVAAGA 179

Query: 360 RHTLAIVE 367
            H++AI E
Sbjct: 180 EHSVAITE 187



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 12/84 (14%)

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++ +S G +H+VAL     + S+GRG+ G+LG+G          +P ++ A       +D
Sbjct: 15  VLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDT----DDRLLPTHLSA-------LD 63

Query: 348 RRWIAKLVACGGRHTLAIVEWQTE 371
            + I   +ACG  HTLA  E + E
Sbjct: 64  AQQIDS-IACGADHTLAYSESRNE 86


>gi|379318630|pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
           Protein Uvr8
          Length = 372

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 183/357 (51%), Gaps = 43/357 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S   + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G   
Sbjct: 21  LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEV 80

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 81  YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQN 140

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G       DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 141 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWG-- 188

Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP RV   G E+   +A G  H +++   GAL+ +G ++YGQLG
Sbjct: 189 WGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLG 248

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD +    P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ 
Sbjct: 249 HGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQC 308

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           S   P +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 309 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 362



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 31/301 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           K++  + G  H +A+       +WG  E GQ G  + E +    ++   D          
Sbjct: 7   KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 57

Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
             +  V  G  H+V  ++ G   + W WG       G+   +  P+ ++ L   ++K IA
Sbjct: 58  HQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 117

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG GDT+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 118 CGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAA 177

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ ++VP++V    GE    V+CG  H+++++  G 
Sbjct: 178 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   +P  + A  N+            ++ G RHT A+ 
Sbjct: 236 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGARHTXALT 283

Query: 367 E 367
            
Sbjct: 284 S 284



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 21/242 (8%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKL 184
           AP   V  ++AG +HSV L     V +WG+        GD +    P ++  L+  Q+  
Sbjct: 3   APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 62

Query: 185 IAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           +  GA H +A  + G  +++WG  ++G+LG G++     P+P++ L G+ +  IA G  H
Sbjct: 63  VTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSH 122

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T +GEV  WGR ++G+LG GD + S  +VPQK+    G  I  V+ G  H+ A+T 
Sbjct: 123 CLAVTXEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKXVAAGAEHTAAVTE 180

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++ +G G +G LG G +     P  V            G ++      VACG RHT+
Sbjct: 181 DGDLYGWGWGRYGNLGLGDRTDRLVPERV---------TSTGGEK---XSXVACGWRHTI 228

Query: 364 AI 365
           ++
Sbjct: 229 SV 230



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 34/248 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G+ E+      ++A E  +++ V AG+ ++ A+ +DG         
Sbjct: 132 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGR 191

Query: 60  --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +T+  +P +V +    K    A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 192 YGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 251

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D +IP +        + Q++ G  H+  LT +G ++ WG     Q   
Sbjct: 252 ----------LEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGV 301

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++ Q S V VR    ++V  ++ G  H LA+ E   ++AWG    GQLG G++  R+ 
Sbjct: 302 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 361

Query: 223 PIPVQGLS 230
           P  ++ LS
Sbjct: 362 PKIIEALS 369


>gi|242073146|ref|XP_002446509.1| hypothetical protein SORBIDRAFT_06g017130 [Sorghum bicolor]
 gi|241937692|gb|EES10837.1| hypothetical protein SORBIDRAFT_06g017130 [Sorghum bicolor]
          Length = 443

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 178/353 (50%), Gaps = 41/353 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + +WG GEDGQLG G+ E+R    V+   +   + SV+ G+ ++ A  +D          
Sbjct: 35  LCSWGRGEDGQLGHGDAEDRLVPTVLSGFDAPGITSVICGADHTTAYSEDELQVYSWGWG 94

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +     P  V AL   KI Q A G  HCLAV   G+  +WG N+ GQ G  
Sbjct: 95  DFGRLGHGNSSDVFTPQPVKALQGLKIKQIACGDSHCLAVTMAGQVQSWGRNQNGQLGLG 154

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                        D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W     
Sbjct: 155 ----------TTEDSLLPQKIQAFEGVCVKMIAAGAEHTAAVTEDGDLYGWG--WGRYGN 202

Query: 165 ---GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     +P +V  +E  ++ L+A G  H + + + G L+ +G ++YGQLG GD + 
Sbjct: 203 LGLGDRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGHGDFED 262

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P  ++ L   T+  I+ G  H+ ALT +G++YGWG  + G++G G+ND      P +
Sbjct: 263 HLVPHKLEALKDSTISQISGGWRHTMALTSEGKLYGWGWNKFGQVGVGNNDDHCS--PVQ 320

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           V+    + I QV+CG  H++AL+   ++FS+GRG  G+LG G  V    P+ +
Sbjct: 321 VHFPEDQKISQVACGWRHTLALSEKKNVFSWGRGTSGQLGNGEIVDRNTPVLI 373



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 154/300 (51%), Gaps = 33/300 (11%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+       +WG  E GQ G      D   R++    V+    AP   
Sbjct: 16  VVLVSAGASHSVALLTGNVLCSWGRGEDGQLG----HGDAEDRLV--PTVLSGFDAPG-- 67

Query: 136 VRQVAAGGTHSVVLTR-EGHVWTWGQPWPP------GDIKQISVPVRVQGLE--QVKLIA 186
           +  V  G  H+   +  E  V++WG  W        G+   +  P  V+ L+  ++K IA
Sbjct: 68  ITSVICGADHTTAYSEDELQVYSWG--WGDFGRLGHGNSSDVFTPQPVKALQGLKIKQIA 125

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+   G + +WG N+ GQLG G T+    P  +Q   G+ +  IAAG  H+ A
Sbjct: 126 CGDSHCLAVTMAGQVQSWGRNQNGQLGLGTTEDSLLPQKIQAFEGVCVKMIAAGAEHTAA 185

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ +++P+KV+ + GE +V V+CG  H++ ++  G+
Sbjct: 186 VTEDGDLYGWGWGRYGNLGLG--DRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGN 243

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   VP  + A +++            ++ G RHT+A+ 
Sbjct: 244 LYTYGWSKYGQLGHGDF----EDHLVPHKLEALKDS--------TISQISGGWRHTMALT 291



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 21/244 (8%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIA 186
           +P   V  V+AG +HSV L     + +WG+        GD +   VP  + G +   + +
Sbjct: 11  SPPQTVVLVSAGASHSVALLTGNVLCSWGRGEDGQLGHGDAEDRLVPTVLSGFDAPGITS 70

Query: 187 V--GAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           V  GA H  A  ED   +++WG  ++G+LG G++     P PV+ L GL +  IA G  H
Sbjct: 71  VICGADHTTAYSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQGLKIKQIACGDSH 130

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T  G+V  WGR ++G+LG G  + S  ++PQK+    G  +  ++ G  H+ A+T 
Sbjct: 131 CLAVTMAGQVQSWGRNQNGQLGLGTTEDS--LLPQKIQAFEGVCVKMIAAGAEHTAAVTE 188

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++ +G G +G LG G +     P +V  ++   +             LVACG RHT+
Sbjct: 189 DGDLYGWGWGRYGNLGLGDRNDRLLPEKVS-SVEGEKMV-----------LVACGWRHTI 236

Query: 364 AIVE 367
            + +
Sbjct: 237 TVSD 240



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 38/250 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G  E+      ++A E   V+ + AG+ ++ A+ +DG         
Sbjct: 140 VQSWGRNQNGQLGLGTTEDSLLPQKIQAFEGVCVKMIAAGAEHTAAVTEDGDLYGWGWGR 199

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V+++   K+V  A G  H + V D G  Y +G ++YGQ G   
Sbjct: 200 YGNLGLGDRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGNLYTYGWSKYGQLGHGD 259

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                       D ++P +        + Q++ G  H++ LT EG ++ WG  W      
Sbjct: 260 ----------FEDHLVPHKLEALKDSTISQISGGWRHTMALTSEGKLYGWG--WNKFGQV 307

Query: 165 --GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             G+      PV+V   E  K+  +A G  H LAL E   +++WG    GQLG G+   R
Sbjct: 308 GVGNNDDHCSPVQVHFPEDQKISQVACGWRHTLALSEKKNVFSWGRGTSGQLGNGEIVDR 367

Query: 221 SQPIPVQGLS 230
           + P+ +  LS
Sbjct: 368 NTPVLIDALS 377


>gi|390336982|ref|XP_795107.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Strongylocentrotus purpuratus]
          Length = 1391

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 187/392 (47%), Gaps = 47/392 (11%)

Query: 6   SIIAWGSGEDGQLGIG---NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----- 57
           +   WGS  +GQLGIG       +E    V  L   +V+S+  G  ++  + DDG     
Sbjct: 2   ATFCWGSSMEGQLGIGITGGQTTQEVAKEVTTLSGQRVQSISCGKHHTGIVLDDGTLYMC 61

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                    + + +  P QV+AL    I   A G  H LAV D+G+   WG N+ GQCG 
Sbjct: 62  GANSKGQLGQDRNQYKPVQVSALETVVIKHVACGDDHTLAVSDRGQVLGWGRNDRGQCGL 121

Query: 109 EPERKDDTGRILR--RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
                  TG I    R  ++    + + +  +V  G  HS+ LTR+G +++WG       
Sbjct: 122 A------TGDIENKPRPRILKHLASYQFV--KVCCGSLHSMALTRDGRLFSWGD----NT 169

Query: 167 IKQISV----------PVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGT 214
             Q+ +          P  +  L  V L+  A G FH+ AL   G+++ WG N+ GQLG 
Sbjct: 170 YGQLGIGTLVTNYTDRPTELTSLRGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGL 229

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           G+ + ++ P  ++ +    +  IA G  H+  LT DG V+ +G+G  G+LG G N   ++
Sbjct: 230 GNKENKAYPTLLRNMRSQMVKHIACGQDHTAMLTADGGVFLFGQGSEGQLGHGSN--YNE 287

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + P+KV  L G DI QV+CG  H++ L    G +++FG+G HG+LG     +   P  VP
Sbjct: 288 VNPRKVIDLMGSDITQVTCGKHHTLVLEGSKGRLYAFGQGIHGQLGQDEARSCSNPQRVP 347

Query: 334 IN-IPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              +P      +   +  + + +  GG H  +
Sbjct: 348 GPWVPHSSTEKNSSSKGRVVRCIYAGGHHCFS 379



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 152/311 (48%), Gaps = 32/311 (10%)

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRRDIVIP 127
           L    I   A G  H LAV D+ +   WG N+ GQCG    + E K    RILR      
Sbjct: 424 LETVVIKHVACGDDHTLAVSDRVQVLGWGRNDRGQCGLATGDIENKPRP-RILRH----- 477

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV----------PVRVQ 177
              A    V+ V  G  HS+ LTR+G +++WG         Q+ +          P  + 
Sbjct: 478 --LASYQFVK-VCCGSLHSMALTRDGRLFSWGD----NTYGQLGIGTLVTNYTDRPTELT 530

Query: 178 GLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  V L+  A G FH+ AL   G+++ WG N+ GQLG G+ + +S P  ++ +    + 
Sbjct: 531 SLRGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQLGLGNKENKSYPTLLRNMRSQMVK 590

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H+  LT DG V+ +G+G  G+LG G N   +++ P+KV  L G DI QV+CG 
Sbjct: 591 HIACGQDHTAMLTADGGVFLFGQGSEGQLGHGSN--YNEVNPRKVIDLMGSDITQVTCGK 648

Query: 296 THSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN-IPAPRNAGDGVDRRWIAK 353
            H++ L    G +++FG+G HG+LG     +   P  VP   +P    A +   +  + +
Sbjct: 649 HHTLVLEGSKGRLYAFGQGIHGQLGQDEARSCSNPQRVPGPWVPHSSTAKNSSSKGRVVR 708

Query: 354 LVACGGRHTLA 364
            +  GG H  +
Sbjct: 709 CIYAGGHHCFS 719



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 100/190 (52%), Gaps = 20/190 (10%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           ++V+ I+ G  H   + +DG L+  G N  GQLG    Q   +P+ V  L  + +  +A 
Sbjct: 37  QRVQSISCGKHHTGIVLDDGTLYMCGANSKGQLGQDRNQ--YKPVQVSALETVVIKHVAC 94

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  H+ A++D G+V GWGR + G+ G    D  +K  P+ +  LA    V+V CG  HS+
Sbjct: 95  GDDHTLAVSDRGQVLGWGRNDRGQCGLATGDIENKPRPRILKHLASYQFVKVCCGSLHSM 154

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVT--TGQPMEVPI--NIPAPRNAGDGVDRRWIAKLV 355
           ALTRDG +FS+G   +G+LG G  VT  T +P E+     +P  R              V
Sbjct: 155 ALTRDGRLFSWGDNTYGQLGIGTLVTNYTDRPTELTSLRGVPLVR--------------V 200

Query: 356 ACGGRHTLAI 365
           ACGG H+ A+
Sbjct: 201 ACGGFHSFAL 210



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 151/392 (38%), Gaps = 88/392 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           S+  WG  + GQLG+GN E + +  +++ +    V+ +  G  ++  +  DG        
Sbjct: 215 SVFGWGKNDVGQLGLGNKENKAYPTLLRNMRSQMVKHIACGQDHTAMLTADGGVFLFGQG 274

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGNEYGQCGE 108
                       E  P +V  L  + I Q   G  H L ++  +GR YA+G   +GQ G+
Sbjct: 275 SEGQLGHGSNYNEVNPRKVIDLMGSDITQVTCGKHHTLVLEGSKGRLYAFGQGIHGQLGQ 334

Query: 109 EPERKDDTGRILRRDIVIPQRCAPK-----------LIVRQVAAGGTHSVVLTREGHVWT 157
                 D  R       +P    P             +VR + AGG H            
Sbjct: 335 ------DEARSCSNPQRVPGPWVPHSSTEKNSSSKGRVVRCIYAGGHHC----------- 377

Query: 158 WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           +       D  QI +  R         I+   F  L                  L T   
Sbjct: 378 FSTATNAADDIQIKLLFRD--------ISTRIFFQLTXXXXXXXXXXXXXXXXXLET--- 426

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
                         + +  +A G  H+ A++D  +V GWGR + G+ G    D  +K  P
Sbjct: 427 --------------VVIKHVACGDDHTLAVSDRVQVLGWGRNDRGQCGLATGDIENKPRP 472

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT--TGQPMEVPI- 334
           + +  LA    V+V CG  HS+ALTRDG +FS+G   +G+LG G  VT  T +P E+   
Sbjct: 473 RILRHLASYQFVKVCCGSLHSMALTRDGRLFSWGDNTYGQLGIGTLVTNYTDRPTELTSL 532

Query: 335 -NIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             +P  R              VACGG H+ A+
Sbjct: 533 RGVPLVR--------------VACGGFHSFAL 550



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 35/249 (14%)

Query: 7   IIAWGSGEDGQLGI--GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           ++ WG  + GQ G+  G+ E +    +++ L  Y+   V  GS +S+A+  DG+      
Sbjct: 448 VLGWGRNDRGQCGLATGDIENKPRPRILRHLASYQFVKVCCGSLHSMALTRDGRLFSWGD 507

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T   + P+++ +L    +V+ A GG+H  A+   G  + WG N+ GQ 
Sbjct: 508 NTYGQLGIGTLVTNYTDRPTELTSLRGVPLVRVACGGFHSFALTISGSVFGWGKNDVGQL 567

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G   +       +LR             +V+ +A G  H+ +LT +G V+ +GQ      
Sbjct: 568 GLGNKENKSYPTLLRN--------MRSQMVKHIACGQDHTAMLTADGGVFLFGQGSEGQL 619

Query: 163 PPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQ-EDGALWAWGNNEYGQLGTGDTQP 219
             G       P +V  L    +  +  G  H L L+   G L+A+G   +GQLG  + + 
Sbjct: 620 GHGSNYNEVNPRKVIDLMGSDITQVTCGKHHTLVLEGSKGRLYAFGQGIHGQLGQDEARS 679

Query: 220 RSQPIPVQG 228
            S P  V G
Sbjct: 680 CSNPQRVPG 688


>gi|354584103|ref|ZP_09003000.1| Listeria/Bacterioides repeat-containing protein [Paenibacillus
           lactis 154]
 gi|353197365|gb|EHB62858.1| Listeria/Bacterioides repeat-containing protein [Paenibacillus
           lactis 154]
          Length = 1286

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 174/349 (49%), Gaps = 39/349 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  + +WG G+ GQLG G    R    + K L    V  V  G R+++A+  DG   
Sbjct: 48  LVSSGEVYSWGYGDRGQLGNGTWSARTTPVMAKGLN--HVIDVHTGVRSTMALRSDGTVW 105

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T                 N+P QV+ LS  K V   +G +H +A+ + G  + WG N+ G
Sbjct: 106 TWGSNENGQLGIGTVTDMNVPGQVSGLSGIKAVSGGLG-YHSMALSEDGSVWTWGKNDNG 164

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           + G         G  L+++   P + A    V  +AAGG  S+ L  +G VW WG     
Sbjct: 165 ELGN--------GTTLQQNT--PVQVAGLNDVTAIAAGGYFSLALKSDGTVWAWGVNGDG 214

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G      VPV+V GL  V  IA G  H+LA+ +DG +WAWG N YG LG G    R
Sbjct: 215 ELGDGTTTDRYVPVQVAGLTDVMAIAAGGSHSLAVTQDGTVWAWGKNTYGTLGDGTRTNR 274

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           ++P+ ++ L    +V +A GG+HS AL   G V+ WG     +LG G N  +S ++P  V
Sbjct: 275 TRPVQIKNLQ--HIVAVAGGGYHSLALDRTGNVWSWGDNSQRQLGVGSN--ASSLIPVPV 330

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           + +  E + +++ GG HSVA+ +DG ++ +G    G+LG G   T   P
Sbjct: 331 SGI--EHVREIAAGGFHSVAMKKDGTVWGWGFNGGGQLGDGTSSTRDTP 377



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 123/273 (45%), Gaps = 34/273 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           S+  WG  ++G+LG G   ++     V  L    V ++ AG   SLA+            
Sbjct: 154 SVWTWGKNDNGELGNGTTLQQNTPVQVAGLN--DVTAIAAGGYFSLALKSDGTVWAWGVN 211

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T    +P QV  L  T ++  A GG H LAV   G  +AWG N YG  G+ 
Sbjct: 212 GDGELGDGTTTDRYVPVQVAGL--TDVMAIAAGGSHSLAVTQDGTVWAWGKNTYGTLGDG 269

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPG 165
                      R +   P +      +  VA GG HS+ L R G+VW+WG    +    G
Sbjct: 270 ----------TRTNRTRPVQIKNLQHIVAVAGGGYHSLALDRTGNVWSWGDNSQRQLGVG 319

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 +PV V G+E V+ IA G FH++A+++DG +W WG N  GQLG G +  R  P  
Sbjct: 320 SNASSLIPVPVSGIEHVREIAAGGFHSVAMKKDGTVWGWGFNGGGQLGDGTSSTRDTPTL 379

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            + +   T  D  +G  +  ++T D     W +
Sbjct: 380 TKAVLDTTPPDPGSGTLNPDSITTDSVALQWPK 412



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 31/238 (13%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAVGA 189
           ++ AG  H+  L   G V++WG     GD  Q+        + PV  +GL  V  +  G 
Sbjct: 37  KLVAGYYHTASLVSSGEVYSWGY----GDRGQLGNGTWSARTTPVMAKGLNHVIDVHTGV 92

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
              +AL+ DG +W WG+NE GQLG G     + P  V GLSG+  V     G+HS AL++
Sbjct: 93  RSTMALRSDGTVWTWGSNENGQLGIGTVTDMNVPGQVSGLSGIKAVS-GGLGYHSMALSE 151

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG+ ++G LG G   + +   P +V  L   D+  ++ GG  S+AL  DG +++
Sbjct: 152 DGSVWTWGKNDNGELGNGTTLQQN--TPVQVAGL--NDVTAIAAGGYFSLALKSDGTVWA 207

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G    G LG G    T     VP+ +    +             +A GG H+LA+ +
Sbjct: 208 WGVNGDGELGDG----TTTDRYVPVQVAGLTD----------VMAIAAGGSHSLAVTQ 251


>gi|357163608|ref|XP_003579788.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
           [Brachypodium distachyon]
          Length = 449

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 179/359 (49%), Gaps = 43/359 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + +WG GEDGQLG G+ E+R    V+   +  ++ SV+ G+ ++ A  ++          
Sbjct: 42  LCSWGRGEDGQLGHGDAEDRLVPTVISGFDAPRITSVICGADHTTAYSEEEQQVYSWGWG 101

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +     P  V AL   KI Q A G  HCLAV   G   +WG N+ GQ G  
Sbjct: 102 DFGRLGHGNSSDVFTPQPVRALQGIKIKQMACGDSHCLAVTMGGEVQSWGRNQNGQLGLG 161

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                        D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W     
Sbjct: 162 T----------TEDSLLPQKIQAFEGICVKMIAAGAEHTAAVTEDGDLYGWG--WGRYGN 209

Query: 165 ---GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP +V  +E  ++ LIA G  H + +   G L+ +G ++YGQLG GD + 
Sbjct: 210 LGLGDRNDRFVPEKVSLVEGEKMVLIACGWRHTITVSSSGILYTYGWSKYGQLGHGDFED 269

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
              P  V+ L   +   I+ G  H+ ALT DG++YGWG  + G++G GD+ D  S   P 
Sbjct: 270 HLFPHKVEALKDSSTSQISGGWRHTMALTSDGKLYGWGWNKFGQVGAGDSVDHCS---PV 326

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           +V   A + + QV+CG  H++A T   ++F++GRG  G+LG+G  V   +P+ +    P
Sbjct: 327 QVMFPAEQKVAQVACGWRHTLAYTEKKNVFAWGRGTSGQLGHGEIVDRNKPLMIDAISP 385



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 152/298 (51%), Gaps = 29/298 (9%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+ +     +WG  E GQ G      D   R++    VI    AP+  
Sbjct: 23  VVLVSAGASHSVALLEGNVLCSWGRGEDGQLG----HGDAEDRLV--PTVISGFDAPR-- 74

Query: 136 VRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLEQVKL--IAVG 188
           +  V  G  H+   + E    + W WG       G+   +  P  V+ L+ +K+  +A G
Sbjct: 75  ITSVICGADHTTAYSEEEQQVYSWGWGDFGRLGHGNSSDVFTPQPVRALQGIKIKQMACG 134

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+   G + +WG N+ GQLG G T+    P  +Q   G+ +  IAAG  H+ A+T
Sbjct: 135 DSHCLAVTMGGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAFEGICVKMIAAGAEHTAAVT 194

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           +DG++YGWG G +G LG G  D++ + VP+KV+L+ GE +V ++CG  H++ ++  G ++
Sbjct: 195 EDGDLYGWGWGRYGNLGLG--DRNDRFVPEKVSLVEGEKMVLIACGWRHTITVSSSGILY 252

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++G   +G+LG+G      +    P  + A +++            ++ G RHT+A+ 
Sbjct: 253 TYGWSKYGQLGHGDF----EDHLFPHKVEALKDSS--------TSQISGGWRHTMALT 298



 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           ++S+  +  +G  + GQLG G+ E+  +   V+AL+      +  G R+++A+  DGK  
Sbjct: 245 VSSSGILYTYGWSKYGQLGHGDFEDHLFPHKVEALKDSSTSQISGGWRHTMALTSDGKLY 304

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         +     P QV   +  K+ Q A G  H LA  ++   +AWG    G
Sbjct: 305 GWGWNKFGQVGAGDSVDHCSPVQVMFPAEQKVAQVACGWRHTLAYTEKKNVFAWGRGTSG 364

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           Q G       D  + L  D + P     K +    A   T  V
Sbjct: 365 QLGH--GEIVDRNKPLMIDAISPDGSGSKKLESSTAVPFTAKV 405


>gi|443688897|gb|ELT91442.1| hypothetical protein CAPTEDRAFT_169244 [Capitella teleta]
          Length = 1060

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 178/358 (49%), Gaps = 45/358 (12%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDGKT-- 59
           +S++ WGS   GQLG+G  EE E V + + +  +   +V  +  G +++L +  DG+   
Sbjct: 9   SSVLCWGSLTHGQLGLGGLEE-ETVTLPREIRSFCNVEVVHIACGLQHTLFVKKDGRVLS 67

Query: 60  ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       K    P+ +++L    ++QA+ G  H   + D G+ + WG NE  Q G
Sbjct: 68  CGNNDYGQLGHEKPCKRPALIDSLGERNVLQASSGTKHSTVLTDAGQVFTWGSNEDNQLG 127

Query: 108 EEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG------ 159
                    G++      IP+  R      V QVA G  H+V LT  G ++TWG      
Sbjct: 128 R--------GQVDSASTSIPRMVRGLADHKVVQVACGSAHTVGLTATGQIYTWGSNNHGQ 179

Query: 160 ----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                  P  + + +S    + GL  V+ +A GA HNL L   GAL+AWG N +GQLG G
Sbjct: 180 LGLANKTPQNEPQWVSC---ISGLPIVR-VAAGADHNLVLTISGALFAWGCNSFGQLGVG 235

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           D Q R  P  V+ L    +  +A G  HS ALT DG V+ +G G +G+L  G N  ++++
Sbjct: 236 DDQDRGAPTLVKTLRNQGICALACGDDHSLALTRDGGVFTFGAGMYGQL--GHNTSNNEL 293

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +P+KV  L G  + Q++CG  HS+A     G ++ FG G +G+LG G  V    P  V
Sbjct: 294 LPRKVFELMGSSVTQIACGRKHSIAYVPSSGRVYVFGLGGNGQLGTGSTVNRMSPAMV 351



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 55/258 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           +  WGS ED QLG G  +        +V+ L  +KV  V  GS +++ +   G+  T   
Sbjct: 115 VFTWGSNEDNQLGRGQVDSASTSIPRMVRGLADHKVVQVACGSAHTVGLTATGQIYTWGS 174

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        +N P  V+ +S   IV+ A G  H L +   G  +AWG N +GQ G 
Sbjct: 175 NNHGQLGLANKTPQNEPQWVSCISGLPIVRVAAGADHNLVLTISGALFAWGCNSFGQLGV 234

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP 161
             ++                R AP L+       +  +A G  HS+ LTR+G V+T+G  
Sbjct: 235 GDDQ---------------DRGAPTLVKTLRNQGICALACGDDHSLALTRDGGVFTFGA- 278

Query: 162 WPPGDIKQIS--------VPVRVQGL--EQVKLIAVGAFHNLA-LQEDGALWAWGNNEYG 210
              G   Q+         +P +V  L    V  IA G  H++A +   G ++ +G    G
Sbjct: 279 ---GMYGQLGHNTSNNELLPRKVFELMGSSVTQIACGRKHSIAYVPSSGRVYVFGLGGNG 335

Query: 211 QLGTGDTQPRSQPIPVQG 228
           QLGTG T  R  P  V+G
Sbjct: 336 QLGTGSTVNRMSPAMVKG 353


>gi|327277952|ref|XP_003223727.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Anolis carolinensis]
          Length = 1052

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 162/312 (51%), Gaps = 36/312 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK--DDTGRILRR 122
           P + N   N  +     G  H + V D G  Y  G N+ GQ G E  RK  +  G +  +
Sbjct: 25  PRRCNFFLNKTVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKRPEQVGALDAQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
           +IV             V+ G  H++ L  +G V+ WG     Q   PG  +   VP  ++
Sbjct: 85  NIV------------AVSCGEAHTLTLNDKGQVYAWGFAADGQLGLPGTEEYTRVPRNIK 132

Query: 178 GLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTL 234
            L  V+++  A G +H+LAL +   +++WG N++GQLG G D + ++ P  ++ L G+  
Sbjct: 133 SLSDVQIVQVACGYYHSLALSKGSEVFSWGQNKHGQLGLGYDLKKQTSPQLIKSLLGIPF 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             IAAGG HS ALT  G V+GWGR + G+LG   ND++ + VP  +  L  + IV +SCG
Sbjct: 193 GQIAAGGAHSFALTLSGAVFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+ ALT++G +F+FG G +G+LG+    +TG  +        PR   + +    I   
Sbjct: 251 EDHTAALTKEGGVFTFGAGGYGQLGHN---STGHEIN-------PRKVFELMGN--IVTQ 298

Query: 355 VACGGRHTLAIV 366
           +ACG +HT A V
Sbjct: 299 IACGRQHTSAFV 310



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 185/397 (46%), Gaps = 60/397 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP +        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------VVLEPRRCNFFLNKTVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H L ++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKRPEQVGALDAQNIVAVSCGEAHTLTLNDKGQVYAWGFAADG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLPGTEEYTR-------VPRNI----KSLSDVQIVQVACGYYHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D+K+ + P  ++ L  +    IA G  H+ AL   GA++ WG N++GQLG
Sbjct: 164 NKHGQLGLGYDLKKQTSPQLIKSLLGIPFGQIAAGGAHSFALTLSGAVFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I+ G  H+ ALT +G V+ +G G +G+L  G N    
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTGH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGNIVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGSTSNRKSPFPV 341

Query: 333 -----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P N   P N+    D  +  + +  GG  + +
Sbjct: 342 KGNFLPFNGQIPLNSDR--DEYYYVRRIFSGGDQSFS 376



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G +                                    K
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLGYD-----------------------------------LK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L      Q A GG H  A+   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFGQIAAGGAHSFALTLSGAVFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  ++ G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTGHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLG G T  R  P PV+G
Sbjct: 288 VFELMGNIVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGSTSNRKSPFPVKG 343


>gi|327277954|ref|XP_003223728.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Anolis carolinensis]
          Length = 1060

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 162/312 (51%), Gaps = 36/312 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK--DDTGRILRR 122
           P + N   N  +     G  H + V D G  Y  G N+ GQ G E  RK  +  G +  +
Sbjct: 25  PRRCNFFLNKTVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKRPEQVGALDAQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
           +IV             V+ G  H++ L  +G V+ WG     Q   PG  +   VP  ++
Sbjct: 85  NIV------------AVSCGEAHTLTLNDKGQVYAWGFAADGQLGLPGTEEYTRVPRNIK 132

Query: 178 GLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTL 234
            L  V+++  A G +H+LAL +   +++WG N++GQLG G D + ++ P  ++ L G+  
Sbjct: 133 SLSDVQIVQVACGYYHSLALSKGSEVFSWGQNKHGQLGLGYDLKKQTSPQLIKSLLGIPF 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             IAAGG HS ALT  G V+GWGR + G+LG   ND++ + VP  +  L  + IV +SCG
Sbjct: 193 GQIAAGGAHSFALTLSGAVFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+ ALT++G +F+FG G +G+LG+    +TG  +        PR   + +    I   
Sbjct: 251 EDHTAALTKEGGVFTFGAGGYGQLGHN---STGHEIN-------PRKVFELMGN--IVTQ 298

Query: 355 VACGGRHTLAIV 366
           +ACG +HT A V
Sbjct: 299 IACGRQHTSAFV 310



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 185/397 (46%), Gaps = 60/397 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP +        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------VVLEPRRCNFFLNKTVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H L ++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKRPEQVGALDAQNIVAVSCGEAHTLTLNDKGQVYAWGFAADG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLPGTEEYTR-------VPRNI----KSLSDVQIVQVACGYYHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D+K+ + P  ++ L  +    IA G  H+ AL   GA++ WG N++GQLG
Sbjct: 164 NKHGQLGLGYDLKKQTSPQLIKSLLGIPFGQIAAGGAHSFALTLSGAVFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I+ G  H+ ALT +G V+ +G G +G+L  G N    
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTGH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGNIVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGSTSNRKSPFPV 341

Query: 333 -----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P N   P N+    D  +  + +  GG  + +
Sbjct: 342 KGNFLPFNGQIPLNSDR--DEYYYVRRIFSGGDQSFS 376



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G +                                    K
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLGYD-----------------------------------LK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L      Q A GG H  A+   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFGQIAAGGAHSFALTLSGAVFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  ++ G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTGHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLG G T  R  P PV+G
Sbjct: 288 VFELMGNIVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGSTSNRKSPFPVKG 343


>gi|329928889|ref|ZP_08282703.1| regulator of chromosome condensation (RCC1) repeat protein
           [Paenibacillus sp. HGF5]
 gi|328937260|gb|EGG33685.1| regulator of chromosome condensation (RCC1) repeat protein
           [Paenibacillus sp. HGF5]
          Length = 719

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 170/341 (49%), Gaps = 39/341 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  + +WG G+ GQLG G    R    + K L    V  + +G R+S+A+  DG   
Sbjct: 48  LVSSGEVYSWGYGDRGQLGDGTWNTRTTPVMAKNLN--HVIDIHSGVRSSMALRQDGTVW 105

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T                 N P+QV  LS  K +   +  +H +A+ + G  + WG N+ G
Sbjct: 106 TWGANENGQLGIGTITNVNAPAQVPGLSGIKAISGGLA-YHGMALSENGTVWTWGKNDNG 164

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           + G     + ++          P   A    V  +AAGG +S+ L  +G VW WG     
Sbjct: 165 ELGNGTTTQQNS----------PVLVAGLSDVTAIAAGGYYSLALKSDGTVWAWGVNGSG 214

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   +  VPV+V GL  V  IA G  H+LA+++DG +WAWGNN YG LG G    R
Sbjct: 215 ELGDGTTTERHVPVQVAGLTDVMAIAAGGSHSLAIRQDGTVWAWGNNTYGTLGDGTRTHR 274

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           ++P+ V+ L    +V +A GG+HS A+   G V+ WG     +LG   N  +S ++P  V
Sbjct: 275 TRPVQVRNLQ--HIVAVAGGGYHSLAVDQAGNVWSWGDNSQQQLGLSSN--ASSLIPVPV 330

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             +  E + ++S GG HSVA+ +DG ++ +G    G+LG G
Sbjct: 331 TGI--EHVREISAGGFHSVAMKKDGTVWGWGYNSGGQLGDG 369



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 35/289 (12%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G +H  ++   G  Y+WG  + GQ G+        G    R   +  +    +I   + +
Sbjct: 41  GYYHTASLVSSGEVYSWGYGDRGQLGD--------GTWNTRTTPVMAKNLNHVI--DIHS 90

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVG-AFHNLALQ 196
           G   S+ L ++G VWTWG         G I  ++ P +V GL  +K I+ G A+H +AL 
Sbjct: 91  GVRSSMALRQDGTVWTWGANENGQLGIGTITNVNAPAQVPGLSGIKAISGGLAYHGMALS 150

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           E+G +W WG N+ G+LG G T  ++ P+ V GLS +T   IAAGG++S AL  DG V+ W
Sbjct: 151 ENGTVWTWGKNDNGELGNGTTTQQNSPVLVAGLSDVTA--IAAGGYYSLALKSDGTVWAW 208

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G    G LG  D   + + VP +V  L   D++ ++ GG+HS+A+ +DG ++++G   +G
Sbjct: 209 GVNGSGELG--DGTTTERHVPVQVAGLT--DVMAIAAGGSHSLAIRQDGTVWAWGNNTYG 264

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            LG G +    +P++V       RN    V        VA GG H+LA+
Sbjct: 265 TLGDGTRTHRTRPVQV-------RNLQHIV-------AVAGGGYHSLAV 299



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 8/151 (5%)

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
           KL+A G +H  +L   G +++WG  + GQLG G    R+ P+  + L+   ++DI +G  
Sbjct: 37  KLVA-GYYHTASLVSSGEVYSWGYGDRGQLGDGTWNTRTTPVMAKNLN--HVIDIHSGVR 93

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG-GTHSVAL 301
            S AL  DG V+ WG  E+G+LG G    ++   P +V  L+G  I  +S G   H +AL
Sbjct: 94  SSMALRQDGTVWTWGANENGQLGIG--TITNVNAPAQVPGLSG--IKAISGGLAYHGMAL 149

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + +G ++++G+ D+G LG G       P+ V
Sbjct: 150 SENGTVWTWGKNDNGELGNGTTTQQNSPVLV 180



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           + AG +H+ +L   GEVY WG G+ G+LG G  N +++ ++ + +N      ++ +  G 
Sbjct: 38  LVAGYYHTASLVSSGEVYSWGYGDRGQLGDGTWNTRTTPVMAKNLN-----HVIDIHSGV 92

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             S+AL +DG ++++G  ++G+LG G       P +VP
Sbjct: 93  RSSMALRQDGTVWTWGANENGQLGIGTITNVNAPAQVP 130


>gi|444919546|ref|ZP_21239558.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444708349|gb|ELW49424.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 494

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 175/349 (50%), Gaps = 41/349 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG+   GQLG G          V+     +V +V AGS +SLA+  DG        
Sbjct: 16  TVWAWGANSSGQLGDGTTTYSPVPVPVQVQGLSEVVAVDAGSSHSLAVRSDGTVWAWGSN 75

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T + + P QV  LS    V A  G  H LA+   G  +AWG N  GQ    
Sbjct: 76  ASGQLGDETTISRSTPVQVLGLSGVLFVAA--GSSHVLALRYDGTVWAWGSNSSGQ---- 129

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
             R D T      +  +P +      V  VAAG  HS+ +  +G  W WG         G
Sbjct: 130 --RGDGT----TNNRALPVQAQGLSGVMAVAAGDNHSLAVRSDGSAWAWGSNASGQLGEG 183

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV+VQGL  V  +A G+ H+LA++ DG +WAWG N  GQLG G T  R  P+ 
Sbjct: 184 TTSNRPEPVQVQGLSGVVAVAAGSAHSLAVRSDGTVWAWGANASGQLGDGTTTDRLVPVQ 243

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQGLSG  +V +AAG  HS A+ +DG V+GWGR +  +LG G       +VP +V  L+ 
Sbjct: 244 VQGLSG--VVAVAAGHHHSLAVRNDGTVWGWGRNDSNQLGKG---SMRLLVPAQVQGLSA 298

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             +V V+ G THS+A+  DG +++ G  ++G+LG G   TT + + VP+
Sbjct: 299 --VVAVAAGDTHSLAVGSDGTVWAVGSNNNGQLGDG--TTTYRLVPVPV 343



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 179/381 (46%), Gaps = 59/381 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWGS   GQ G G    R     V+A     V +V AG  +SLA+  DG        
Sbjct: 118 TVWAWGSNSSGQRGDGTTNNRA--LPVQAQGLSGVMAVAAGDNHSLAVRSDGSAWAWGSN 175

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    T N P  V     + +V  A G  H LAV   G  +AWG N  GQ G+   
Sbjct: 176 ASGQLGEGTTSNRPEPVQVQGLSGVVAVAAGSAHSLAVRSDGTVWAWGANASGQLGDGTT 235

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
                      D ++P +      V  VAAG  HS+ +  +G VW WG+     D  Q+ 
Sbjct: 236 T----------DRLVPVQVQGLSGVVAVAAGHHHSLAVRNDGTVWGWGR----NDSNQLG 281

Query: 172 -------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
                  VP +VQGL  V  +A G  H+LA+  DG +WA G+N  GQLG G T  R  P+
Sbjct: 282 KGSMRLLVPAQVQGLSAVVAVAAGDTHSLAVGSDGTVWAVGSNNNGQLGDGTTTYRLVPV 341

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           PV  LSG+  V +AA  +HS A+  DG V+ WG    G+LG  D   ++++VP +V+ L+
Sbjct: 342 PV--LSGV--VSVAANDYHSLAVRSDGTVWAWGYNSTGQLG--DGTTTTRLVPVQVSGLS 395

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
             ++V V  GG HS+A+  DG  + +G   +G+LG G        + VP+ +      G 
Sbjct: 396 --EVVSVVAGGYHSLAVRSDGSAWDWGSNAYGQLGDGSTTY----LPVPVRVQQLSGVG- 448

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
                     VA G  H+LA+
Sbjct: 449 ---------AVASGSSHSLAL 460



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 163/338 (48%), Gaps = 43/338 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------------- 53
           AWGS   GQLG G    R     V+ L    V +V AGS +SLA+               
Sbjct: 171 AWGSNASGQLGEGTTSNRPEPVQVQGLS--GVVAVAAGSAHSLAVRSDGTVWAWGANASG 228

Query: 54  -CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              DG T    +P QV  LS   +V  A G  H LAV + G  + WG N+  Q G+   R
Sbjct: 229 QLGDGTTTDRLVPVQVQGLSG--VVAVAAGHHHSLAVRNDGTVWGWGRNDSNQLGKGSMR 286

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                      +++P +      V  VAAG THS+ +  +G VW  G         G   
Sbjct: 287 -----------LLVPAQVQGLSAVVAVAAGDTHSLAVGSDGTVWAVGSNNNGQLGDGTTT 335

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              VPV V  L  V  +A   +H+LA++ DG +WAWG N  GQLG G T  R  P+ V G
Sbjct: 336 YRLVPVPV--LSGVVSVAANDYHSLAVRSDGTVWAWGYNSTGQLGDGTTTTRLVPVQVSG 393

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           LS   +V + AGG+HS A+  DG  + WG   +G+LG  D   +   VP +V  L+G  +
Sbjct: 394 LS--EVVSVVAGGYHSLAVRSDGSAWDWGSNAYGQLG--DGSTTYLPVPVRVQQLSG--V 447

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
             V+ G +HS+AL  DG ++++G    G+LG G  + T
Sbjct: 448 GAVASGSSHSLALRSDGTVWTWGYNSFGQLGNGPPLNT 485



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/257 (36%), Positives = 134/257 (52%), Gaps = 18/257 (7%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  H LA+   G  +AWG N  GQ G+        G      + +P +      V  V
Sbjct: 2   AAGSSHSLALRSDGTVWAWGANSSGQLGD--------GTTTYSPVPVPVQVQGLSEVVAV 53

Query: 140 AAGGTHSVVLTREGHVWTWGQPWP--PGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLAL 195
            AG +HS+ +  +G VW WG       GD   IS   PV+V GL  V  +A G+ H LAL
Sbjct: 54  DAGSSHSLAVRSDGTVWAWGSNASGQLGDETTISRSTPVQVLGLSGVLFVAAGSSHVLAL 113

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + DG +WAWG+N  GQ G G T  R+ P+  QGLSG+  + +AAG  HS A+  DG  + 
Sbjct: 114 RYDGTVWAWGSNSSGQRGDGTTNNRALPVQAQGLSGV--MAVAAGDNHSLAVRSDGSAWA 171

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+LG G    S++  P +V  L+G  +V V+ G  HS+A+  DG ++++G    
Sbjct: 172 WGSNASGQLGEGT--TSNRPEPVQVQGLSG--VVAVAAGSAHSLAVRSDGTVWAWGANAS 227

Query: 316 GRLGYGRKVTTGQPMEV 332
           G+LG G       P++V
Sbjct: 228 GQLGDGTTTDRLVPVQV 244



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 134/281 (47%), Gaps = 37/281 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT-----K 60
           ++ AWG+   GQLG G   +R     V+ L    V +V AG  +SLA+ +DG        
Sbjct: 218 TVWAWGANASGQLGDGTTTDRLVPVQVQGLS--GVVAVAAGHHHSLAVRNDGTVWGWGRN 275

Query: 61  TEN----------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
             N          +P+QV  LS   +V  A G  H LAV   G  +A G N  GQ G+  
Sbjct: 276 DSNQLGKGSMRLLVPAQVQGLS--AVVAVAAGDTHSLAVGSDGTVWAVGSNNNGQLGD-- 331

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                 G    R + +P        V  VAA   HS+ +  +G VW WG         G 
Sbjct: 332 ------GTTTYRLVPVPVLSG----VVSVAANDYHSLAVRSDGTVWAWGYNSTGQLGDGT 381

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
                VPV+V GL +V  +  G +H+LA++ DG+ W WG+N YGQLG G T     P+ V
Sbjct: 382 TTTRLVPVQVSGLSEVVSVVAGGYHSLAVRSDGSAWDWGSNAYGQLGDGSTTYLPVPVRV 441

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           Q LSG+  V  A+G  HS AL  DG V+ WG    G+LG G
Sbjct: 442 QQLSGVGAV--ASGSSHSLALRSDGTVWTWGYNSFGQLGNG 480



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 113/200 (56%), Gaps = 12/200 (6%)

Query: 139 VAAGGTHSVVLTREGHVWTWG--QPWPPGD----IKQISVPVRVQGLEQVKLIAVGAFHN 192
           +AAG +HS+ L  +G VW WG       GD       + VPV+VQGL +V  +  G+ H+
Sbjct: 1   MAAGSSHSLALRSDGTVWAWGANSSGQLGDGTTTYSPVPVPVQVQGLSEVVAVDAGSSHS 60

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA++ DG +WAWG+N  GQLG   T  RS P+ V GLSG+  V  AAG  H  AL  DG 
Sbjct: 61  LAVRSDGTVWAWGSNASGQLGDETTISRSTPVQVLGLSGVLFV--AAGSSHVLALRYDGT 118

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG    G+   GD   +++ +P +   L+G  ++ V+ G  HS+A+  DG  +++G 
Sbjct: 119 VWAWGSNSSGQ--RGDGTTNNRALPVQAQGLSG--VMAVAAGDNHSLAVRSDGSAWAWGS 174

Query: 313 GDHGRLGYGRKVTTGQPMEV 332
              G+LG G      +P++V
Sbjct: 175 NASGQLGEGTTSNRPEPVQV 194


>gi|312622781|ref|YP_004024394.1| regulator of chromosome condensation rcc1 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203248|gb|ADQ46575.1| regulator of chromosome condensation RCC1 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 743

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 67/367 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  S+ AWG    G+LGIG            +L+P                       
Sbjct: 157 VGSDGSVWAWGINNHGELGIG------------SLKP----------------------- 181

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
              +P +V  L +  +V  + G +H LA+   G  ++WG NE G+ G  P  +D T    
Sbjct: 182 -SAVPVKVKGLKD--VVAVSAGLYHSLALKRDGTVWSWGYNEDGELGNRPT-EDYT---- 233

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQISVPVRVQG 178
              + +P R      V  ++AGG HS+ L ++G VW WG       G I    +PVR++ 
Sbjct: 234 ---VSVPVRVKGLSDVIAISAGGFHSIALNKDGAVWIWGGGIIEKNGKIDNSYIPVRIRW 290

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           L +V  IA G  H++AL++DG +W WG+N YG LG+   +    P+ V+GL    +V +A
Sbjct: 291 LNKVVAIAAGYRHSIALKDDGTVWVWGHNSYGVLGSNVGEHSFLPVQVKGLK--NVVAVA 348

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  HS ALT +G ++ WG    G+LG  +N+  S  +P KV  L  +++V ++ GG+H+
Sbjct: 349 AGRLHSVALTKNGTIWAWGNNAFGQLG-RENNSFSLNLPYKVKWL--DNVVAIAAGGSHT 405

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           +A+ RDG ++S+G  + G+LG G   ++  P  V            G+++   A LV  G
Sbjct: 406 LAIKRDGTVWSWGANNKGQLGNGTYKSSYIPTCVK-----------GLNK---AVLVEAG 451

Query: 359 GRHTLAI 365
            +H+LA+
Sbjct: 452 SQHSLAV 458



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 173/354 (48%), Gaps = 56/354 (15%)

Query: 36  EPYKVRSVVAGSRNSLAICDDGKT----------------KTENIPSQVNALSNTKIVQA 79
           E +KV S  AGS ++LAI DDG                  K   IP +V  L +  +V  
Sbjct: 40  ENFKVISSGAGSLHTLAIKDDGTVWAWGYNGFGQLGNGTYKDSCIPVRVKGLKD--VVAV 97

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           + G +H LA+   G  + WG   YGQ      RK D    + RD   P +      +  +
Sbjct: 98  SAGTFHSLALKKDGSVWIWGHTNYGQ------RKSD----VYRDFTTPVKVKELKNIVAI 147

Query: 140 AAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           AAG   S+ +  +G VW WG         G +K  +VPV+V+GL+ V  ++ G +H+LAL
Sbjct: 148 AAGWDFSLAVGSDGSVWAWGINNHGELGIGSLKPSAVPVKVKGLKDVVAVSAGLYHSLAL 207

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPR--SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           + DG +W+WG NE G+LG   T+    S P+ V+GLS   ++ I+AGG+HS AL  DG V
Sbjct: 208 KRDGTVWSWGYNEDGELGNRPTEDYTVSVPVRVKGLS--DVIAISAGGFHSIALNKDGAV 265

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG G   + G  DN      +P ++  L    +V ++ G  HS+AL  DG ++ +G  
Sbjct: 266 WIWGGGIIEKNGKIDNS----YIPVRIRWL--NKVVAIAAGYRHSIALKDDGTVWVWGHN 319

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +G LG       G+   +P+ +   +N             VA G  H++A+ +
Sbjct: 320 SYGVLGS----NVGEHSFLPVQVKGLKN----------VVAVAAGRLHSVALTK 359



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 175/375 (46%), Gaps = 86/375 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAICDDGKT 59
           +I AWG+   GQLG  NN             PYKV+      ++ AG  ++LAI  DG  
Sbjct: 362 TIWAWGNNAFGQLGRENNS-------FSLNLPYKVKWLDNVVAIAAGGSHTLAIKRDGTV 414

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           K+  IP+ V  L+   +V+A  G  H LAVD  G  + WG  E 
Sbjct: 415 WSWGANNKGQLGNGTYKSSYIPTCVKGLNKAVLVEA--GSQHSLAVDKDGTVWVWGFIE- 471

Query: 104 GQCGEEPERKD----------------------DTGRILRRDIVI--------------- 126
                E   KD                      D   +LR+D  I               
Sbjct: 472 -SVWSEKNTKDILSPLPIKIGKLNDITEIAGGLDYILVLRKDGNIWGCGNDFYFRKFTDS 530

Query: 127 PQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV---PVRV 176
                 KLI       VR +AAG  HS+ +  +G VW+WG        K ++    PV++
Sbjct: 531 SVSSVTKLIRLDNIKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKEKYLNFSEKPVKI 590

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           +GL  V  +A G +H+LAL++DG +W+WG N YGQLG G  +    P+ V+GL+   +V 
Sbjct: 591 KGLSGVVKVAAGKYHSLALKKDGTVWSWGYNAYGQLGNGTRETSFVPVRVKGLN--NVVA 648

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           IAAG +HS AL  DG V+ WG    G+LG  + + S+  VP KV  L  +++V ++ G T
Sbjct: 649 IAAGDYHSMALKKDGTVWVWGSNIRGQLGRRNIEFST--VPLKVEKL--DNVVAIAAGDT 704

Query: 297 HSVALTRDGHIFSFG 311
           HSVAL +DG ++ +G
Sbjct: 705 HSVALKKDGTVWVWG 719



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 168/379 (44%), Gaps = 49/379 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ +WG  EDG+LG    E+      V+      V ++ AG  +S+A+  DG        
Sbjct: 212 TVWSWGYNEDGELGNRPTEDYTVSVPVRVKGLSDVIAISAGGFHSIALNKDGAVWIWGGG 271

Query: 58  ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 K     IP ++  L+  K+V  A G  H +A+ D G  + WG N YG  G    
Sbjct: 272 IIEKNGKIDNSYIPVRIRWLN--KVVAIAAGYRHSIALKDDGTVWVWGHNSYGVLGSNVG 329

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGD 166
                         +P +      V  VAAG  HSV LT+ G +W WG     Q     +
Sbjct: 330 EHS----------FLPVQVKGLKNVVAVAAGRLHSVALTKNGTIWAWGNNAFGQLGRENN 379

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
              +++P +V+ L+ V  IA G  H LA++ DG +W+WG N  GQLG G  +    P  V
Sbjct: 380 SFSLNLPYKVKWLDNVVAIAAGGSHTLAIKRDGTVWSWGANNKGQLGNGTYKSSYIPTCV 439

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           +GL+   LV+  AG  HS A+  DG V+ WG  E     + + +    + P  + +    
Sbjct: 440 KGLNKAVLVE--AGSQHSLAVDKDGTVWVWGFIES---VWSEKNTKDILSPLPIKIGKLN 494

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
           DI +++ G  + + L +DG+I+  G   + R      V++   +    NI   R+     
Sbjct: 495 DITEIAGGLDYILVLRKDGNIWGCGNDFYFRKFTDSSVSSVTKLIRLDNIKNVRS----- 549

Query: 347 DRRWIAKLVACGGRHTLAI 365
                   +A G  H+LA+
Sbjct: 550 --------IAAGYFHSLAV 560



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 164/382 (42%), Gaps = 97/382 (25%)

Query: 39  KVRSVVAGSRNSLAICDDGKT----------------KTENIPSQVNALSNTKIVQAAIG 82
           KV ++ AG R+S+A+ DDG                  +   +P QV  L N  +V  A G
Sbjct: 293 KVVAIAAGYRHSIALKDDGTVWVWGHNSYGVLGSNVGEHSFLPVQVKGLKN--VVAVAAG 350

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
             H +A+   G  +AWG N +GQ G E              + +P +      V  +AAG
Sbjct: 351 RLHSVALTKNGTIWAWGNNAFGQLGRENNS---------FSLNLPYKVKWLDNVVAIAAG 401

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQED 198
           G+H++ + R+G VW+WG         G  K   +P  V+GL +  L+  G+ H+LA+ +D
Sbjct: 402 GSHTLAIKRDGTVWSWGANNKGQLGNGTYKSSYIPTCVKGLNKAVLVEAGSQHSLAVDKD 461

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQ------------GLSGLTLV----------- 235
           G +W WG  E       +T+    P+P++            GL  + ++           
Sbjct: 462 GTVWVWGFIE-SVWSEKNTKDILSPLPIKIGKLNDITEIAGGLDYILVLRKDGNIWGCGN 520

Query: 236 ----------------------------DIAAGGWHSTALTDDGEVYGWGR----GEHGR 263
                                        IAAG +HS A+  DG V+ WG      +   
Sbjct: 521 DFYFRKFTDSSVSSVTKLIRLDNIKNVRSIAAGYFHSLAVRTDGTVWSWGDTNLDNKEKY 580

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           L F +        P K+  L+G  +V+V+ G  HS+AL +DG ++S+G   +G+LG G +
Sbjct: 581 LNFSEK-------PVKIKGLSG--VVKVAAGKYHSLALKKDGTVWSWGYNAYGQLGNGTR 631

Query: 324 VTTGQPMEVP-INIPAPRNAGD 344
            T+  P+ V  +N      AGD
Sbjct: 632 ETSFVPVRVKGLNNVVAIAAGD 653


>gi|444919547|ref|ZP_21239559.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444708350|gb|ELW49425.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 684

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 127/356 (35%), Positives = 177/356 (49%), Gaps = 50/356 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV----AGSRNSLAICDD 56
           + S  ++ AWG+   GQLG G   +R        L P +V S V    AGS  SLA+ +D
Sbjct: 201 LRSDGTVWAWGANASGQLGDGTTTKR--------LVPVQVLSGVVAMEAGSGYSLAVRND 252

Query: 57  GKT----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G                   + + P QV  LS  ++V  A G    LA+   G  +AWG 
Sbjct: 253 GTVWAWGYNFSGQLGDDTVTSRSTPVQVLGLS--EVVAVAAGSSLSLALRSDGTVWAWGS 310

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           N+YGQ GE        G    R   +  R     +   VAAG  HS+ +  +G VW WG 
Sbjct: 311 NDYGQRGE--------GTTSNRAFPVQARGLSGGVA--VAAGYAHSLAVRSDGTVWAWGS 360

Query: 161 PWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                   G     S PV+VQGL  V  ++ GA  +LA++ DG +WAWG+N  GQLG G 
Sbjct: 361 NASGQLGEGTTSNRSEPVQVQGLSGVVAVSAGASSSLAIRSDGTVWAWGSNASGQLGDGT 420

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T  R  P+ VQGLSG+  V + AG   S A+ +DG V+GWG   +G+LG         +V
Sbjct: 421 TTDRLVPVQVQGLSGV--VAVVAGTSFSLAVRNDGTVWGWGYNGYGQLG--TFTSLFVLV 476

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           P +V  L+G  +V V+ G  HS+A+  DG +++ GR D+G+LG G       P++V
Sbjct: 477 PVQVTGLSG--VVAVAAGNLHSLAVRSDGTVWALGRNDNGQLGDGSWTNRSAPVQV 530



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 164/336 (48%), Gaps = 39/336 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWGS   GQLG G    R     V+ L    V +V AG+ +SLAI            
Sbjct: 354 TVWAWGSNASGQLGEGTTSNRSEPVQVQGLS--GVVAVSAGASSSLAIRSDGTVWAWGSN 411

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T    +P QV  LS   +V    G    LAV + G  + WG N YGQ G  
Sbjct: 412 ASGQLGDGTTTDRLVPVQVQGLSG--VVAVVAGTSFSLAVRNDGTVWGWGYNGYGQLGT- 468

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                         +++P +      V  VAAG  HS+ +  +G VW  G+        G
Sbjct: 469 ---------FTSLFVLVPVQVTGLSGVVAVAAGNLHSLAVRSDGTVWALGRNDNGQLGDG 519

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S PV+V GL  V  +A G  H+LA++ DG++WAWG N +GQLG G    RS P+ 
Sbjct: 520 SWTNRSAPVQVTGLSGVVSVAAGDSHSLAVRYDGSVWAWGYNSFGQLGDGSWFQRSAPVQ 579

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLSG     +AA   +S A+  DG V+ WG   +G+LG G    S+++VP +V  L G
Sbjct: 580 VTGLSGRG--SVAASSDYSMAVRYDGTVWAWGFNLYGQLGDG-TTSSNQLVPVQVQQLRG 636

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             +V V  G +HS+AL  DG ++++G    G+LG G
Sbjct: 637 --VVAVEVGSSHSLALRSDGTVWTWGYNSFGQLGNG 670



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 183/385 (47%), Gaps = 56/385 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWG+   GQLG G    R  +  V  L   +V +V AGS +SLA+       
Sbjct: 151 LRSDGTVWAWGANASGQLGEGTTTNR--LVPVPVLGLSEVVAVEAGSSHSLALRSDGTVW 208

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T    +P QV  LS    ++A  G  + LAV + G  +AWG N  G
Sbjct: 209 AWGANASGQLGDGTTTKRLVPVQV--LSGVVAMEAGSG--YSLAVRNDGTVWAWGYNFSG 264

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G++      T          P +      V  VAAG + S+ L  +G VW WG     
Sbjct: 265 QLGDDTVTSRST----------PVQVLGLSEVVAVAAGSSLSLALRSDGTVWAWGSNDYG 314

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G     + PV+ +GL     +A G  H+LA++ DG +WAWG+N  GQLG G T  R
Sbjct: 315 QRGEGTTSNRAFPVQARGLSGGVAVAAGYAHSLAVRSDGTVWAWGSNASGQLGEGTTSNR 374

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S+P+ VQGLSG  +V ++AG   S A+  DG V+ WG    G+L  GD   + ++VP +V
Sbjct: 375 SEPVQVQGLSG--VVAVSAGASSSLAIRSDGTVWAWGSNASGQL--GDGTTTDRLVPVQV 430

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L+G  +V V  G + S+A+  DG ++ +G   +G+LG      T   + VP+ +    
Sbjct: 431 QGLSG--VVAVVAGTSFSLAVRNDGTVWGWGYNGYGQLG----TFTSLFVLVPVQVTGLS 484

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
                         VA G  H+LA+
Sbjct: 485 G----------VVAVAAGNLHSLAV 499



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 182/378 (48%), Gaps = 58/378 (15%)

Query: 10  WGSGEDG--QLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT-------- 59
           W +G +G  QLG G  + R     V+ L   +V +  AGS +SLA+ +DG          
Sbjct: 8   WAAGNNGSGQLGDGTRDNRS--TPVQVLGLSEVVAAAAGSIHSLALRNDGTVWAWGYNGY 65

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    +   P QV  LS    V A  G +H LAV D G  +AWG N  GQ GE   
Sbjct: 66  GQLGNGSLGSRAEPVQVQGLSGGVSVDA--GHYHSLAVRDDGTVWAWGDNPNGQLGE--- 120

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                G   RR  ++P +      V  V AG +HS+ L  +G VW WG         G  
Sbjct: 121 -----GTTTRR--LVPVQVQGLSEVVAVTAGSSHSLALRSDGTVWAWGANASGQLGEGTT 173

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
               VPV V GL +V  +  G+ H+LAL+ DG +WAWG N  GQLG G T  R   +PVQ
Sbjct: 174 TNRLVPVPVLGLSEVVAVEAGSSHSLALRSDGTVWAWGANASGQLGDGTTTKR--LVPVQ 231

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            LSG  +V + AG  +S A+ +DG V+ WG    G+L  GD+  +S+  P  V +L   +
Sbjct: 232 VLSG--VVAMEAGSGYSLAVRNDGTVWAWGYNFSGQL--GDDTVTSRSTP--VQVLGLSE 285

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +V V+ G + S+AL  DG ++++G  D+G+ G G       P++        R    GV 
Sbjct: 286 VVAVAAGSSLSLALRSDGTVWAWGSNDYGQRGEGTTSNRAFPVQ-------ARGLSGGV- 337

Query: 348 RRWIAKLVACGGRHTLAI 365
                  VA G  H+LA+
Sbjct: 338 ------AVAAGYAHSLAV 349



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 164/347 (47%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG      R     V+ L   +V +V AGS  SLA+  DG        
Sbjct: 254 TVWAWGYNFSGQLGDDTVTSRS--TPVQVLGLSEVVAVAAGSSLSLALRSDGTVWAWGSN 311

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P Q   LS    V A     H LAV   G  +AWG N  GQ GE 
Sbjct: 312 DYGQRGEGTTSNRAFPVQARGLSGGVAVAAGYA--HSLAVRSDGTVWAWGSNASGQLGEG 369

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                      R + V  Q  +    V  V+AG + S+ +  +G VW WG         G
Sbjct: 370 TTSN-------RSEPVQVQGLSG---VVAVSAGASSSLAIRSDGTVWAWGSNASGQLGDG 419

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 VPV+VQGL  V  +  G   +LA++ DG +W WG N YGQLGT  +     P+ 
Sbjct: 420 TTTDRLVPVQVQGLSGVVAVVAGTSFSLAVRNDGTVWGWGYNGYGQLGTFTSLFVLVPVQ 479

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLSG+  V +AAG  HS A+  DG V+  GR ++G+LG  D   +++  P +V  L+G
Sbjct: 480 VTGLSGV--VAVAAGNLHSLAVRSDGTVWALGRNDNGQLG--DGSWTNRSAPVQVTGLSG 535

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +V V+ G +HS+A+  DG ++++G    G+LG G       P++V
Sbjct: 536 --VVSVAAGDSHSLAVRYDGSVWAWGYNSFGQLGDGSWFQRSAPVQV 580



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 153/296 (51%), Gaps = 26/296 (8%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           +V A   N      DG     + P QV  LS  ++V AA G  H LA+ + G  +AWG N
Sbjct: 6   TVWAAGNNGSGQLGDGTRDNRSTPVQVLGLS--EVVAAAAGSIHSLALRNDGTVWAWGYN 63

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            YGQ G             R + V  Q  +  +    V AG  HS+ +  +G VW WG  
Sbjct: 64  GYGQLGNGSLGS-------RAEPVQVQGLSGGV---SVDAGHYHSLAVRDDGTVWAWGDN 113

Query: 162 WPPGDIKQIS-----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            P G + + +     VPV+VQGL +V  +  G+ H+LAL+ DG +WAWG N  GQLG G 
Sbjct: 114 -PNGQLGEGTTTRRLVPVQVQGLSEVVAVTAGSSHSLALRSDGTVWAWGANASGQLGEGT 172

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T  R  P+PV GLS   +V + AG  HS AL  DG V+ WG    G+LG G   K  ++V
Sbjct: 173 TTNRLVPVPVLGLS--EVVAVEAGSSHSLALRSDGTVWAWGANASGQLGDGTTTK--RLV 228

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           P  V +L+G  +V +  G  +S+A+  DG ++++G    G+LG     +   P++V
Sbjct: 229 P--VQVLSG--VVAMEAGSGYSLAVRNDGTVWAWGYNFSGQLGDDTVTSRSTPVQV 280



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           ++ DG +WA GNN  GQLG G    RS P+ V GLS   +V  AAG  HS AL +DG V+
Sbjct: 1   MRPDGTVWAAGNNGSGQLGDGTRDNRSTPVQVLGLS--EVVAAAAGSIHSLALRNDGTVW 58

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG   +G+LG G     S+  P +V  L+G   V V  G  HS+A+  DG ++++G   
Sbjct: 59  AWGYNGYGQLGNG--SLGSRAEPVQVQGLSGG--VSVDAGHYHSLAVRDDGTVWAWGDNP 114

Query: 315 HGRLGYGRKVTTGQPMEV 332
           +G+LG G       P++V
Sbjct: 115 NGQLGEGTTTRRLVPVQV 132



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 51/122 (41%), Gaps = 21/122 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+ AWG    GQLG G+  +R     V  L      SV A S  S+A+  DG        
Sbjct: 554 SVWAWGYNSFGQLGDGSWFQRSAPVQVTGLSGRG--SVAASSDYSMAVRYDGTVWAWGFN 611

Query: 59  --------TKTEN--IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   T + N  +P QV  L    +V   +G  H LA+   G  + WG N +GQ G 
Sbjct: 612 LYGQLGDGTTSSNQLVPVQVQQLRG--VVAVEVGSSHSLALRSDGTVWTWGYNSFGQLGN 669

Query: 109 EP 110
            P
Sbjct: 670 GP 671


>gi|255563857|ref|XP_002522929.1| uvb-resistance protein uvr8, putative [Ricinus communis]
 gi|223537856|gb|EEF39472.1| uvb-resistance protein uvr8, putative [Ricinus communis]
          Length = 437

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 182/358 (50%), Gaps = 43/358 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   +  WG GEDGQLG G+ ++R    ++  LE  ++ SV+ G+ +++A  +     
Sbjct: 29  LLSGNVVCTWGRGEDGQLGHGDAQDRLSPTILSTLEGLEIISVICGADHTIAYSESHTDV 88

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +     P  +  L   KI Q A G  HCLAV  +G+  +WG N+ 
Sbjct: 89  YSWGWGDFGRLGHGNSSDLFTPQPIRQLHGLKIKQIACGDSHCLAVTMEGQVQSWGRNQN 148

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 149 GQLGLGTTE----------DSLVPQKIQAFQGVPIKMVAAGAEHTAAVTEDGELYGWG-- 196

Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD K   VP +V     E++ ++A G  H +++   G L+ +G ++YGQLG
Sbjct: 197 WGRYGNLGLGDRKDRLVPEKVSLPHGEKMVMVACGWRHTISVSSSGGLYTYGWSKYGQLG 256

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD      P  ++ L G  +  I+ G  H+ A+T DG++YGWG  + G++G GDN D+S
Sbjct: 257 HGDYADHLIPHQLEALQGSFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDRS 316

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           S   P +V L   + ++ +SCG  H++A+T   ++FS+GRG +G+LG G       P+
Sbjct: 317 S---PVQVKLPLEQKVILISCGWRHTLAVTERQNVFSWGRGTNGQLGNGECTDRNVPV 371



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 59/343 (17%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++  + G  H +A+        WG  E GQ G    +   +  IL             L
Sbjct: 15  RVLLISAGASHSVALLSGNVVCTWGRGEDGQLGHGDAQDRLSPTILS--------TLEGL 66

Query: 135 IVRQVAAGGTHSVVLTREGHV----WTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
            +  V  G  H++  + E H     W WG       G+   +  P  ++ L   ++K IA
Sbjct: 67  EIISVICGADHTIAYS-ESHTDVYSWGWGDFGRLGHGNSSDLFTPQPIRQLHGLKIKQIA 125

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+  +G + +WG N+ GQLG G T+    P  +Q   G+ +  +AAG  H+ A
Sbjct: 126 CGDSHCLAVTMEGQVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVPIKMVAAGAEHTAA 185

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DGE+YGWG G +G LG G  D+  ++VP+KV+L  GE +V V+CG  H+++++  G 
Sbjct: 186 VTEDGELYGWGWGRYGNLGLG--DRKDRLVPEKVSLPHGEKMVMVACGWRHTISVSSSGG 243

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPI------------------------------NI 336
           ++++G   +G+LG+G       P ++                                N 
Sbjct: 244 LYTYGWSKYGQLGHGDYADHLIPHQLEALQGSFISQISGGWRHTMAVTSDGKLYGWGWNK 303

Query: 337 PAPRNAGDGVDRRWIAK----------LVACGGRHTLAIVEWQ 369
                 GD VDR    +          L++CG RHTLA+ E Q
Sbjct: 304 FGQVGVGDNVDRSSPVQVKLPLEQKVILISCGWRHTLAVTERQ 346



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 21/242 (8%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIA 186
           AP   V  ++AG +HSV L     V TWG+        GD +    P  +  LE +++I+
Sbjct: 11  APVRRVLLISAGASHSVALLSGNVVCTWGRGEDGQLGHGDAQDRLSPTILSTLEGLEIIS 70

Query: 187 V--GAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           V  GA H +A  E    +++WG  ++G+LG G++     P P++ L GL +  IA G  H
Sbjct: 71  VICGADHTIAYSESHTDVYSWGWGDFGRLGHGNSSDLFTPQPIRQLHGLKIKQIACGDSH 130

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T +G+V  WGR ++G+LG G  + S  +VPQK+    G  I  V+ G  H+ A+T 
Sbjct: 131 CLAVTMEGQVQSWGRNQNGQLGLGTTEDS--LVPQKIQAFQGVPIKMVAAGAEHTAAVTE 188

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++ +G G +G LG G +    +   VP  +  P              +VACG RHT+
Sbjct: 189 DGELYGWGWGRYGNLGLGDR----KDRLVPEKVSLPHGEK--------MVMVACGWRHTI 236

Query: 364 AI 365
           ++
Sbjct: 237 SV 238



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 20/201 (9%)

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            +++ PVR     +V LI+ GA H++AL     +  WG  E GQLG GD Q R  P  + 
Sbjct: 7   SEVTAPVR-----RVLLISAGASHSVALLSGNVVCTWGRGEDGQLGHGDAQDRLSPTILS 61

Query: 228 GLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            L GL ++ +  G  H+ A ++   +VY WG G+ GRLG G++  S    PQ +  L G 
Sbjct: 62  TLEGLEIISVICGADHTIAYSESHTDVYSWGWGDFGRLGHGNS--SDLFTPQPIRQLHGL 119

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            I Q++CG +H +A+T +G + S+GR  +G+LG G   TT   +     +P    A  GV
Sbjct: 120 KIKQIACGDSHCLAVTMEGQVQSWGRNQNGQLGLG---TTEDSL-----VPQKIQAFQGV 171

Query: 347 DRRWIAKLVACGGRHTLAIVE 367
                 K+VA G  HT A+ E
Sbjct: 172 P----IKMVAAGAEHTAAVTE 188



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 38/250 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G  E+      ++A +   ++ V AG+ ++ A+ +DG+        
Sbjct: 140 VQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVPIKMVAAGAEHTAAVTEDGELYGWGWGR 199

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                    K   +P +V+     K+V  A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 200 YGNLGLGDRKDRLVPEKVSLPHGEKMVMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGD 259

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                       D +IP +        + Q++ G  H++ +T +G ++ WG  W      
Sbjct: 260 ----------YADHLIPHQLEALQGSFISQISGGWRHTMAVTSDGKLYGWG--WNKFGQV 307

Query: 165 --GDIKQISVPVRVQ-GLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             GD    S PV+V+  LEQ V LI+ G  H LA+ E   +++WG    GQLG G+   R
Sbjct: 308 GVGDNVDRSSPVQVKLPLEQKVILISCGWRHTLAVTERQNVFSWGRGTNGQLGNGECTDR 367

Query: 221 SQPIPVQGLS 230
           + P+ ++ LS
Sbjct: 368 NVPVIIKALS 377


>gi|356508943|ref|XP_003523212.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine
           max]
          Length = 441

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 178/363 (49%), Gaps = 55/363 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G+ ++R     + AL+   + S+  G+ ++LA  +     
Sbjct: 29  LLSGNVVCSWGRGEDGQLGHGDTDDRPLPTQLSALDAQHIDSIACGADHTLAYSESRNEL 88

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +    IP  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 89  YSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIKQIACGDSHCLAVTMEGEVQSWGRNQN 148

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-- 159
           GQ G               D ++PQ+      + ++ VAAG  HSV +T  G ++ WG  
Sbjct: 149 GQLGLGNTE----------DSLVPQKIQAFKGVPIKMVAAGAEHSVAITENGELYGWGWG 198

Query: 160 -----------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
                        W P  +  +         +++ ++A G  H +++   G ++ +G ++
Sbjct: 199 RYGNLGLGDRNDRWNPEKVSSVDC-------DKMVMVACGWRHTISVSSSGGIYTYGWSK 251

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFG 267
           YGQLG G+ +    P  +Q LS   L+   +GGW HS ALT  G ++GWG  + G++G G
Sbjct: 252 YGQLGHGNFEDSLVPQKLQALSD-KLISQVSGGWRHSMALTSTGLLFGWGWNKFGQVGVG 310

Query: 268 DN-DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           DN D  S   P +V     + +VQ+SCG  H++A+T   ++FS+GRG +G+LG+G  +  
Sbjct: 311 DNLDHCS---PVQVKFPQDQRVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTIDR 367

Query: 327 GQP 329
             P
Sbjct: 368 NSP 370



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 21/242 (8%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKL 184
           +P   V  ++AG +H+V L     V +WG+        GD     +P ++  L  + +  
Sbjct: 11  SPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRPLPTQLSALDAQHIDS 70

Query: 185 IAVGAFHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           IA GA H LA  E    L++WG  ++G+LG G++     P P+  L GL +  IA G  H
Sbjct: 71  IACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIKQIACGDSH 130

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A+T +GEV  WGR ++G+LG G+ + S  +VPQK+    G  I  V+ G  HSVA+T 
Sbjct: 131 CLAVTMEGEVQSWGRNQNGQLGLGNTEDS--LVPQKIQAFKGVPIKMVAAGAEHSVAITE 188

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +G ++ +G G +G LG G +     P +V             VD   +  +VACG RHT+
Sbjct: 189 NGELYGWGWGRYGNLGLGDRNDRWNPEKV-----------SSVDCDKMV-MVACGWRHTI 236

Query: 364 AI 365
           ++
Sbjct: 237 SV 238



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 19/256 (7%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           ++++  + G  H +A+       +WG  E GQ G         G    R +         
Sbjct: 14  SRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGH--------GDTDDRPLPTQLSALDA 65

Query: 134 LIVRQVAAGGTHSVVLTR---EGHVWTWGQ--PWPPGDIKQISVP---VRVQGLEQVKLI 185
             +  +A G  H++  +    E + W WG       G+   + +P   + +QGL ++K I
Sbjct: 66  QHIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGL-RIKQI 124

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H LA+  +G + +WG N+ GQLG G+T+    P  +Q   G+ +  +AAG  HS 
Sbjct: 125 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGNTEDSLVPQKIQAFKGVPIKMVAAGAEHSV 184

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+T++GE+YGWG G +G LG G  D++ +  P+KV+ +  + +V V+CG  H+++++  G
Sbjct: 185 AITENGELYGWGWGRYGNLGLG--DRNDRWNPEKVSSVDCDKMVMVACGWRHTISVSSSG 242

Query: 306 HIFSFGRGDHGRLGYG 321
            I+++G   +G+LG+G
Sbjct: 243 GIYTYGWSKYGQLGHG 258



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 99/188 (52%), Gaps = 15/188 (7%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V LI+ GA H +AL     + +WG  E GQLG GDT  R  P  +  L    +  IA G
Sbjct: 15  RVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRPLPTQLSALDAQHIDSIACG 74

Query: 241 GWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             H+ A ++   E+Y WG G+ GRLG G++  S  ++PQ +  L G  I Q++CG +H +
Sbjct: 75  ADHTLAYSESRNELYSWGWGDFGRLGHGNS--SDLLIPQPIIALQGLRIKQIACGDSHCL 132

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T +G + S+GR  +G+LG G    +  P ++      P             K+VA G 
Sbjct: 133 AVTMEGEVQSWGRNQNGQLGLGNTEDSLVPQKIQAFKGVP------------IKMVAAGA 180

Query: 360 RHTLAIVE 367
            H++AI E
Sbjct: 181 EHSVAITE 188



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 12/84 (14%)

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++ +S G +H+VAL     + S+GRG+ G+LG+G   T  +P+  P  + A       +D
Sbjct: 16  VLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGD--TDDRPL--PTQLSA-------LD 64

Query: 348 RRWIAKLVACGGRHTLAIVEWQTE 371
            + I   +ACG  HTLA  E + E
Sbjct: 65  AQHIDS-IACGADHTLAYSESRNE 87


>gi|301117316|ref|XP_002906386.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262107735|gb|EEY65787.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 419

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 189/414 (45%), Gaps = 71/414 (17%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCV-----------VKALEPYKVRSVVAGSRNSL 51
           S   + A+G  +DGQLG G  + R  + +           +  L    + +V  GSR+++
Sbjct: 4   SECVVTAFGCNDDGQLGTGA-KRRPTLAIDDVSASNFPQQIGNLPDEDIVAVSCGSRHTM 62

Query: 52  AICDDGKT----------------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQG 93
           A+   G                  K  N P ++      ++    I  GG H  AV   G
Sbjct: 63  ALTSSGAVYSWGWGSMGQLGHGDLKIINEPQKIAFFEQERLEVDYISCGGCHSAAVTKDG 122

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
             Y WG + +GQ G  P+  +     L     +P+  A + IV+ V+ GGTH+  LT  G
Sbjct: 123 TLYVWGESHWGQLGL-PKEYEAAHESLPVKCPMPEGEAGETIVK-VSCGGTHTAALTSFG 180

Query: 154 HVWTWGQPWPPGDIKQISV------------------PVRVQGL--EQVKLIAVGAFHNL 193
            V+ WG+    GD  Q+ +                  P  ++    E+V  +A GAFH+ 
Sbjct: 181 RVYVWGR----GDSGQLGIGSVWMKDPENESLMGASRPHLLKAFNGEKVVQVACGAFHSA 236

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           A+ E G ++ WG  +YG LG G +  +  P  ++    + ++ ++ GGWH+  +   G+ 
Sbjct: 237 AVTEQGHVYVWGKEDYGMLGVGQSSDQQIPKRLEYFDDIPVLRVSCGGWHTVVVAKSGDC 296

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           Y +GRGE+GRLG GD    S+  P  V  L G+ ++Q +CGG+H++ +T DG  +  GR 
Sbjct: 297 YAFGRGEYGRLGLGDT--KSRTRPHLVKALKGKTVIQAACGGSHTLFVTSDGTAYVAGRP 354

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           DHGRLG       G P  + +  P P             +  + GG H++A++ 
Sbjct: 355 DHGRLGLADMKALGVPTRLDLG-PIP------------VRQFSAGGAHSVALMH 395



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 22/179 (12%)

Query: 203 AWGNNEYGQLGTG----------DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           A+G N+ GQLGTG          D    + P  +  L    +V ++ G  H+ ALT  G 
Sbjct: 10  AFGCNDDGQLGTGAKRRPTLAIDDVSASNFPQQIGNLPDEDIVAVSCGSRHTMALTSSGA 69

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE--DIVQVSCGGTHSVALTRDGHIFSF 310
           VY WG G  G+LG GD    ++  PQK+     E  ++  +SCGG HS A+T+DG ++ +
Sbjct: 70  VYSWGWGSMGQLGHGDLKIINE--PQKIAFFEQERLEVDYISCGGCHSAAVTKDGTLYVW 127

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPR-NAGDGVDRRWIAKLVACGGRHTLAIVEW 368
           G    G+LG  ++        +P+  P P   AG+ + +      V+CGG HT A+  +
Sbjct: 128 GESHWGQLGLPKEYEAAHE-SLPVKCPMPEGEAGETIVK------VSCGGTHTAALTSF 179



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 41/253 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   +  WG G+ GQLGIG+     W      ++  +  S++  SR            
Sbjct: 176 LTSFGRVYVWGRGDSGQLGIGS----VW------MKDPENESLMGASR------------ 213

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P  + A +  K+VQ A G +H  AV +QG  Y WG  +YG  G          + L
Sbjct: 214 ----PHLLKAFNGEKVVQVACGAFHSAAVTEQGHVYVWGKEDYGMLGVGQSSDQQIPKRL 269

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
                IP        V +V+ GG H+VV+ + G  + +G+        GD K  + P  V
Sbjct: 270 EYFDDIP--------VLRVSCGGWHTVVVAKSGDCYAFGRGEYGRLGLGDTKSRTRPHLV 321

Query: 177 QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           + L+   +I  A G  H L +  DG  +  G  ++G+LG  D +    P  +  L  + +
Sbjct: 322 KALKGKTVIQAACGGSHTLFVTSDGTAYVAGRPDHGRLGLADMKALGVPTRLD-LGPIPV 380

Query: 235 VDIAAGGWHSTAL 247
              +AGG HS AL
Sbjct: 381 RQFSAGGAHSVAL 393


>gi|333978308|ref|YP_004516253.1| Ig domain-containing protein [Desulfotomaculum kuznetsovii DSM
           6115]
 gi|333821789|gb|AEG14452.1| Ig domain protein group 2 domain protein [Desulfotomaculum
           kuznetsovii DSM 6115]
          Length = 1401

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/281 (41%), Positives = 149/281 (53%), Gaps = 22/281 (7%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T     P QV  L  T +V  A GG H LA+   G  +AWG N YGQ G+       
Sbjct: 101 DGTTTNRYTPVQVQNL--TGVVAIAAGGGHSLALKSDGTVWAWGYNGYGQLGD------- 151

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
            G I  R    P +      V  VAAGG HS+ L  +G VW WG         G      
Sbjct: 152 -GTITNR--TTPVQVKNLTGVVAVAAGGGHSLALKSDGTVWAWGYNGYGQLGDGTTMNRY 208

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+VQ L  V  IA G+ H+LAL+ DG +WAWGNN YGQLG G T  R+ P+ VQGL+ 
Sbjct: 209 TPVQVQNLTGVVAIAAGSSHSLALKSDGTVWAWGNNGYGQLGDGTTTNRTTPVRVQGLTD 268

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             +V IAAG  HS AL  DG V+ WG    G+L  GD   +++  P +V  L G  +V +
Sbjct: 269 --VVAIAAGNEHSLALKSDGTVWTWGWNYSGQL--GDGTTTNRYTPVQVQNLTG--VVAI 322

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + GG HS+AL  DG ++++G  D G LG G +     P++V
Sbjct: 323 AAGGGHSLALKSDGTVWAWGNNDWGELGDGTRTDRHTPVQV 363



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 163/328 (49%), Gaps = 37/328 (11%)

Query: 43  VVAGSRNSLAICDDGKTKT-ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           + AG   SLAI  DG        P  V  L+    V+A  G ++ LA+   G  +AWG N
Sbjct: 37  IAAGGARSLAIKSDGTVWAWGGTPVPVQNLTGVVAVEA--GSFYSLALKSDGTVWAWGDN 94

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
            YGQ G+        G    R    P +      V  +AAGG HS+ L  +G VW WG  
Sbjct: 95  YYGQLGD--------GTTTNR--YTPVQVQNLTGVVAIAAGGGHSLALKSDGTVWAWGYN 144

Query: 161 ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                  G I   + PV+V+ L  V  +A G  H+LAL+ DG +WAWG N YGQLG G T
Sbjct: 145 GYGQLGDGTITNRTTPVQVKNLTGVVAVAAGGGHSLALKSDGTVWAWGYNGYGQLGDGTT 204

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P+ VQ L+G  +V IAAG  HS AL  DG V+ WG   +G+L  GD   +++  P
Sbjct: 205 MNRYTPVQVQNLTG--VVAIAAGSSHSLALKSDGTVWAWGNNGYGQL--GDGTTTNRTTP 260

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            +V  L   D+V ++ G  HS+AL  DG ++++G    G+LG G       P++V     
Sbjct: 261 VRVQGLT--DVVAIAAGNEHSLALKSDGTVWTWGWNYSGQLGDGTTTNRYTPVQV----- 313

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAI 365
             +N    V        +A GG H+LA+
Sbjct: 314 --QNLTGVV-------AIAAGGGHSLAL 332



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 110/195 (56%), Gaps = 17/195 (8%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
           ++AAGG  S+ +  +G VW WG             PV VQ L  V  +  G+F++LAL+ 
Sbjct: 36  KIAAGGARSLAIKSDGTVWAWG-----------GTPVPVQNLTGVVAVEAGSFYSLALKS 84

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           DG +WAWG+N YGQLG G T  R  P+ VQ L+G  +V IAAGG HS AL  DG V+ WG
Sbjct: 85  DGTVWAWGDNYYGQLGDGTTTNRYTPVQVQNLTG--VVAIAAGGGHSLALKSDGTVWAWG 142

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
              +G+L  GD   +++  P +V  L G   V       HS+AL  DG ++++G   +G+
Sbjct: 143 YNGYGQL--GDGTITNRTTPVQVKNLTGVVAVAAGG--GHSLALKSDGTVWAWGYNGYGQ 198

Query: 318 LGYGRKVTTGQPMEV 332
           LG G  +    P++V
Sbjct: 199 LGDGTTMNRYTPVQV 213



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 110/242 (45%), Gaps = 34/242 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------------- 53
           AWG    GQLG G    R     VK L    V +V AG  +SLA+               
Sbjct: 140 AWGYNGYGQLGDGTITNRTTPVQVKNLT--GVVAVAAGGGHSLALKSDGTVWAWGYNGYG 197

Query: 54  -CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              DG T     P QV  L  T +V  A G  H LA+   G  +AWG N YGQ G+    
Sbjct: 198 QLGDGTTMNRYTPVQVQNL--TGVVAIAAGSSHSLALKSDGTVWAWGNNGYGQLGD---- 251

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK 168
               G    R    P R      V  +AAG  HS+ L  +G VWTWG  +      G   
Sbjct: 252 ----GTTTNR--TTPVRVQGLTDVVAIAAGNEHSLALKSDGTVWTWGWNYSGQLGDGTTT 305

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
               PV+VQ L  V  IA G  H+LAL+ DG +WAWGNN++G+LG G    R  P+ V G
Sbjct: 306 NRYTPVQVQNLTGVVAIAAGGGHSLALKSDGTVWAWGNNDWGELGDGTRTDRHTPVQVSG 365

Query: 229 LS 230
           L+
Sbjct: 366 LN 367



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 35/131 (26%)

Query: 235 VDIAAGGWHSTALTDDGEVYGWG----------------RGEHGRLG------------- 265
           V IAAGG  S A+  DG V+ WG                 G    L              
Sbjct: 35  VKIAAGGARSLAIKSDGTVWAWGGTPVPVQNLTGVVAVEAGSFYSLALKSDGTVWAWGDN 94

Query: 266 ----FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
                GD   +++  P +V  L G  +V ++ GG HS+AL  DG ++++G   +G+LG G
Sbjct: 95  YYGQLGDGTTTNRYTPVQVQNLTG--VVAIAAGGGHSLALKSDGTVWAWGYNGYGQLGDG 152

Query: 322 RKVTTGQPMEV 332
                  P++V
Sbjct: 153 TITNRTTPVQV 163


>gi|115446671|ref|NP_001047115.1| Os02g0554100 [Oryza sativa Japonica Group]
 gi|50725773|dbj|BAD33304.1| putative UVB-resistance protein (UVR8) [Oryza sativa Japonica
           Group]
 gi|113536646|dbj|BAF09029.1| Os02g0554100 [Oryza sativa Japonica Group]
 gi|215697683|dbj|BAG91677.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 453

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 180/357 (50%), Gaps = 45/357 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKAL---EPYKVRSVV-AGSRNSLAICDD------ 56
           + +WG GEDGQLG G+ E+R    V+ A     P  V SVV  G+ ++ A  D+      
Sbjct: 46  VCSWGRGEDGQLGHGDAEDRPVPTVLTAAFDDAPGGVASVVICGADHTTAYSDEELQLYS 105

Query: 57  -----------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      G +     P  + AL   +I Q A G  HCLAV   G  ++WG N+ GQ
Sbjct: 106 WGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQNGQ 165

Query: 106 CGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            G         G     D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W 
Sbjct: 166 LG--------LGNT--EDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWG--WG 213

Query: 164 P------GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                  GD     +P +V  +  +++ L+A G  H + +   G+++ +G ++YGQLG G
Sbjct: 214 RYGNLGLGDRDDRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGHG 273

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           D +    P  ++ L   T+  I+ G  H+ AL  DG++YGWG  + G++G GDN+     
Sbjct: 274 DFEDHLVPHKLEALKDTTISQISGGWRHTMALAADGKLYGWGWNKFGQVGVGDNEDHCS- 332

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            P +VN    + +VQV+CG  H++ALT   ++FS+GRG  G+LG+G  V    P  +
Sbjct: 333 -PVQVNFPNEQKVVQVACGWRHTLALTEAKNVFSWGRGTSGQLGHGEIVDRNIPKMI 388



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 25/298 (8%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
            +V  + G  H +A+   G   +WG  E GQ G      D   R +   +      AP  
Sbjct: 26  SVVLISAGASHSVALLSGGVVCSWGRGEDGQLG----HGDAEDRPVPTVLTAAFDDAPGG 81

Query: 135 IVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLEQVKL--IAV 187
           +   V  G  H+   + E    + W WG       G+   +  P  +Q L+ V++  IA 
Sbjct: 82  VASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIAC 141

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+   G + +WG N+ GQLG G+T+    P  +Q   G+ +  IAAG  H+ A+
Sbjct: 142 GDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAV 201

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+DG++YGWG G +G LG GD D   +++P+KV+ + G+ +V V+CG  H++ ++  G I
Sbjct: 202 TEDGDLYGWGWGRYGNLGLGDRD--DRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSI 259

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +++G   +G+LG+G      +   VP  + A ++             ++ G RHT+A+
Sbjct: 260 YTYGWSKYGQLGHGDF----EDHLVPHKLEALKDT--------TISQISGGWRHTMAL 305



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 44/308 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG G+ G+LG GN+ +      ++AL+  ++  +  G  + LA+   G         
Sbjct: 103 LYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQ 162

Query: 58  -------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   T+   +P ++ A    ++   A G  H  AV + G  Y WG   YG  G   
Sbjct: 163 NGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD 222

Query: 111 ERKDDTGRILRRDIVIPQRCAP----KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-- 164
                     R D +IP++ +     K+++  VA G  H++ ++  G ++T+G  W    
Sbjct: 223 ----------RDDRLIPEKVSSVNGQKMVL--VACGWRHTITVSSSGSIYTYG--WSKYG 268

Query: 165 ----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               GD +   VP +++ L+   +  I+ G  H +AL  DG L+ WG N++GQ+G GD +
Sbjct: 269 QLGHGDFEDHLVPHKLEALKDTTISQISGGWRHTMALAADGKLYGWGWNKFGQVGVGDNE 328

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
               P+ V   +   +V +A G  H+ ALT+   V+ WGRG  G+LG G  +   + +P+
Sbjct: 329 DHCSPVQVNFPNEQKVVQVACGWRHTLALTEAKNVFSWGRGTSGQLGHG--EIVDRNIPK 386

Query: 279 KVNLLAGE 286
            ++ L+ +
Sbjct: 387 MIDALSSD 394



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 27/254 (10%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D  +P+  AP+  V  ++AG +HSV L   G V +WG+        GD +   VP  +  
Sbjct: 16  DEAVPE--APERSVVLISAGASHSVALLSGGVVCSWGRGEDGQLGHGDAEDRPVPTVLTA 73

Query: 179 LEQ------VKLIAVGAFHNLALQ-EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
                      ++  GA H  A   E+  L++WG  ++G+LG G++     P P+Q L G
Sbjct: 74  AFDDAPGGVASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQG 133

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           + +  IA G  H  A+T  G V+ WGR ++G+LG G+ + S  ++PQK+    G  +  +
Sbjct: 134 VRITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDS--LLPQKIQAFEGVRVKMI 191

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + G  H+ A+T DG ++ +G G +G LG G +     P +V     +  N    V     
Sbjct: 192 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRDDRLIPEKV-----SSVNGQKMV----- 241

Query: 352 AKLVACGGRHTLAI 365
             LVACG RHT+ +
Sbjct: 242 --LVACGWRHTITV 253


>gi|379719198|ref|YP_005311329.1| protein ChiA12 [Paenibacillus mucilaginosus 3016]
 gi|378567870|gb|AFC28180.1| ChiA12 [Paenibacillus mucilaginosus 3016]
          Length = 1205

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 169/347 (48%), Gaps = 47/347 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG G+     +GN         V+  + + V ++ AG  ++LAI            
Sbjct: 59  TVWAWGGGQ-----LGNGSTTGSPAPVQVQDLHSVEAIAAGGSHNLAIKSDGTVWAWGFN 113

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   N P QV  L +  IV AA    H LA+   G  +AWG NEYGQ G+ 
Sbjct: 114 GYGQLGDGSTTGRNTPVQVEGLRS--IVGAAAHYDHSLALKSDGTVWAWGRNEYGQLGDG 171

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                      + D   P R      V  +++G  +S+ +  +G VW WG+        G
Sbjct: 172 S----------KTDRHTPVRVKGLDSVVAISSGFGYSLAVKSDGTVWAWGKNEYGQLGNG 221

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q S PV+VQGL  V  +A G +HNLA++ DG +W+WG N  GQLG G    R  P+ 
Sbjct: 222 STTQSSAPVQVQGLHSVTAVASGDYHNLAIKRDGTVWSWGPNLAGQLGDGSDMDRYTPVQ 281

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V+G S  + VD+ AG  HS AL  DG V+ WG  +    GFG +       P +V  L  
Sbjct: 282 VEGFS--SAVDVDAGFGHSLALKSDGTVWAWGNYQFNEWGFGSS------TPVQVQEL-- 331

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + +V ++ G  HS+A+  DG ++++G+ D+G+LG G       P++V
Sbjct: 332 DSVVDIAAGTQHSLAVRNDGTVWAWGKNDNGQLGDGTSTARLTPIKV 378



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 160/354 (45%), Gaps = 54/354 (15%)

Query: 30  CVVKALEPYK-VRSVVAGSRNSLAI-------------CDDGKTKTENIPSQVNALSNTK 75
            VV A   Y  +R    G  ++LA+               +G T     P QV  L + +
Sbjct: 30  SVVAAKSTYSGIRMAAGGESHTLALNANGTVWAWGGGQLGNGSTTGSPAPVQVQDLHSVE 89

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
            + A  GG H LA+   G  +AWG N YGQ G+       TGR        P +      
Sbjct: 90  AIAA--GGSHNLAIKSDGTVWAWGFNGYGQLGD----GSTTGR------NTPVQVEGLRS 137

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFH 191
           +   AA   HS+ L  +G VW WG+        G       PVRV+GL+ V  I+ G  +
Sbjct: 138 IVGAAAHYDHSLALKSDGTVWAWGRNEYGQLGDGSKTDRHTPVRVKGLDSVVAISSGFGY 197

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +LA++ DG +WAWG NEYGQLG G T   S P+ VQGL  +T V  A+G +H+ A+  DG
Sbjct: 198 SLAVKSDGTVWAWGKNEYGQLGNGSTTQSSAPVQVQGLHSVTAV--ASGDYHNLAIKRDG 255

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            V+ WG    G+L  GD     +  P +V   +    V V  G  HS+AL  DG ++++G
Sbjct: 256 TVWSWGPNLAGQL--GDGSDMDRYTPVQVEGFSSA--VDVDAGFGHSLALKSDGTVWAWG 311

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                  G+G           P+ +    +  D          +A G +H+LA+
Sbjct: 312 NYQFNEWGFGSS--------TPVQVQELDSVVD----------IAAGTQHSLAV 347



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 115/251 (45%), Gaps = 38/251 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S  ++ AWG  E GQLG G+  +R     VK L+   V ++ +G   SLA+  DG   
Sbjct: 151 LKSDGTVWAWGRNEYGQLGDGSKTDRHTPVRVKGLD--SVVAISSGFGYSLAVKSDGTVW 208

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T   + P QV  L +   V  A G +H LA+   G  ++WG N  G
Sbjct: 209 AWGKNEYGQLGNGSTTQSSAPVQVQGLHSVTAV--ASGDYHNLAIKRDGTVWSWGPNLAG 266

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+  +           D   P +         V AG  HS+ L  +G VW WG     
Sbjct: 267 QLGDGSDM----------DRYTPVQVEGFSSAVDVDAGFGHSLALKSDGTVWAWGNYQFN 316

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            W  G     S PV+VQ L+ V  IA G  H+LA++ DG +WAWG N+ GQLG G +  R
Sbjct: 317 EWGFGS----STPVQVQELDSVVDIAAGTQHSLAVRNDGTVWAWGKNDNGQLGDGTSTAR 372

Query: 221 SQPIPVQGLSG 231
             PI VQG  G
Sbjct: 373 LTPIKVQGFGG 383


>gi|224093583|ref|XP_002309939.1| predicted protein [Populus trichocarpa]
 gi|222852842|gb|EEE90389.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 178/362 (49%), Gaps = 41/362 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S   + +WG GEDGQLG G+ E+R     +  L+   + S+  G+ ++ +  +     
Sbjct: 33  LLSGNIVCSWGRGEDGQLGHGDAEDRPTPTQLSTLDGLDIISITCGADHTTSYSESRMEV 92

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G +     P  + AL + KI Q A G  HCLAV   G   +WG N+ 
Sbjct: 93  YSWGWGDFGRLGHGNSSDLFTPQPIKALHSLKIRQIACGDSHCLAVTMDGEVQSWGRNQN 152

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G               D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 153 GQLGLGTTE----------DSLVPQKIQAFQGVSIKMVAAGAEHTAAVTEDGELYGWG-- 200

Query: 162 WPP------GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP +V  +  +++ ++A G  H +++   G L+ +G ++YGQLG
Sbjct: 201 WGRYGNLGLGDRNDRLVPEKVSLVNGDKMIMVACGWRHTISVSSSGGLYTYGWSKYGQLG 260

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            GD +    P  V+ L   + + + +GGW H+ ALT DG +YGWG  + G++G GDN   
Sbjct: 261 HGDFEDHLTPHKVEALRD-SYISMISGGWRHTMALTSDGNLYGWGWNKFGQVGVGDNIDH 319

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              V  K        +VQ+SCG  H++A+T   ++FS+GRG +G+LG+G  +    P  +
Sbjct: 320 CSPVQVKFPHEQAHSLVQISCGWRHTLAITERQNVFSWGRGTNGQLGHGESMDRNLPKII 379

Query: 333 PI 334
            +
Sbjct: 380 EV 381



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 76/293 (25%)

Query: 136 VRQV---AAGGTHSVVLTREGHVWTWGQ-------------------------------- 160
           +RQV   +AG +HSV L     V +WG+                                
Sbjct: 17  IRQVILISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRPTPTQLSTLDGLDIISIT 76

Query: 161 -----------------PWPPGDIKQIS--------VPVRVQGLEQVKL--IAVGAFHNL 193
                             W  GD  ++          P  ++ L  +K+  IA G  H L
Sbjct: 77  CGADHTTSYSESRMEVYSWGWGDFGRLGHGNSSDLFTPQPIKALHSLKIRQIACGDSHCL 136

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           A+  DG + +WG N+ GQLG G T+    P  +Q   G+++  +AAG  H+ A+T+DGE+
Sbjct: 137 AVTMDGEVQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSIKMVAAGAEHTAAVTEDGEL 196

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           YGWG G +G LG G  D++ ++VP+KV+L+ G+ ++ V+CG  H+++++  G ++++G  
Sbjct: 197 YGWGWGRYGNLGLG--DRNDRLVPEKVSLVNGDKMIMVACGWRHTISVSSSGGLYTYGWS 254

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +G+LG+G      +    P  + A R++           +++ G RHT+A+ 
Sbjct: 255 KYGQLGHGDF----EDHLTPHKVEALRDS--------YISMISGGWRHTMALT 295



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 107/201 (53%), Gaps = 20/201 (9%)

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            ++S P+R     QV LI+ GA H++AL     + +WG  E GQLG GD + R  P  + 
Sbjct: 11  SEVSGPIR-----QVILISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRPTPTQLS 65

Query: 228 GLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            L GL ++ I  G  H+T+ ++   EVY WG G+ GRLG G++  S    PQ +  L   
Sbjct: 66  TLDGLDIISITCGADHTTSYSESRMEVYSWGWGDFGRLGHGNS--SDLFTPQPIKALHSL 123

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            I Q++CG +H +A+T DG + S+GR  +G+LG G    T +   VP  I A +      
Sbjct: 124 KIRQIACGDSHCLAVTMDGEVQSWGRNQNGQLGLG----TTEDSLVPQKIQAFQGVS--- 176

Query: 347 DRRWIAKLVACGGRHTLAIVE 367
                 K+VA G  HT A+ E
Sbjct: 177 -----IKMVAAGAEHTAAVTE 192



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 40/252 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+G  E+      ++A +   ++ V AG+ ++ A+ +DG+        
Sbjct: 144 VQSWGRNQNGQLGLGTTEDSLVPQKIQAFQGVSIKMVAAGAEHTAAVTEDGELYGWGWGR 203

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V+ ++  K++  A G  H ++V   G  Y +G ++YGQ G   
Sbjct: 204 YGNLGLGDRNDRLVPEKVSLVNGDKMIMVACGWRHTISVSSSGGLYTYGWSKYGQLGHGD 263

Query: 111 ERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                       D + P +        +  ++ G  H++ LT +G+++ WG  W      
Sbjct: 264 ----------FEDHLTPHKVEALRDSYISMISGGWRHTMALTSDGNLYGWG--WNKFGQV 311

Query: 165 --GDIKQISVPVRV----QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
             GD      PV+V    +    +  I+ G  H LA+ E   +++WG    GQLG G++ 
Sbjct: 312 GVGDNIDHCSPVQVKFPHEQAHSLVQISCGWRHTLAITERQNVFSWGRGTNGQLGHGESM 371

Query: 219 PRSQPIPVQGLS 230
            R+ P  ++ LS
Sbjct: 372 DRNLPKIIEVLS 383


>gi|405355587|ref|ZP_11024762.1| hypothetical protein A176_0896 [Chondromyces apiculatus DSM 436]
 gi|397091294|gb|EJJ22112.1| hypothetical protein A176_0896 [Myxococcus sp. (contaminant ex DSM
            436)]
          Length = 1473

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 180/345 (52%), Gaps = 37/345 (10%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------- 57
            AWG+ E GQLG G+N+ R     V +++   +R+V AG+ +++A+ +DG           
Sbjct: 990  AWGANESGQLGDGSNQSRRVPHRVASVK--GLRAVSAGAHHAMALGEDGAVWAWGDNTLG 1047

Query: 58   ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                     T   P +V  LS+ + V A  G    +AV   G A++WG NEYGQ G+   
Sbjct: 1048 QLGDGTSAFTVMWPQRVAELSDVESVAA--GEQFSVAVAHDGTAFSWGSNEYGQLGDGKT 1105

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                  R+   ++ I    A  ++   V A G H+V L  +G +  WG         G  
Sbjct: 1106 GP----RLSPAEVKIGGSKARTVVT--VGAWGQHAVALMADGTLQAWGDNATGQLGDGTT 1159

Query: 168  KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
             + S P  ++G+ +V  ++ GA+H+LAL+ DG +WAWG N +GQLG G T  R+ P+PVQ
Sbjct: 1160 TRRSSPGEIRGVTRVTAVSTGAWHSLALRLDGTVWAWGANGFGQLGDGTTTARAVPVPVQ 1219

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL    +V IAAGG+HS A+  DG V+ WG    G+L  GD    S+ +P +V+ L  E 
Sbjct: 1220 GLR--DVVAIAAGGYHSVAVRSDGTVWTWGYNTFGQL--GDGTSESRALPVQVHKL--EG 1273

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  V+ G  HS+AL  DG +  +G    G+LG G +     P+ +
Sbjct: 1274 VQAVTGGDHHSLALHADGTVSGWGHNASGQLGDGSRTDRYTPVRL 1318



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 171/350 (48%), Gaps = 41/350 (11%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI-CD--------- 55
            S++AWG+   GQLG G          V+ +     RSV +G ++SL + CD         
Sbjct: 787  SVVAWGANASGQLGDGGTTHGARAVTVRGVS--CARSVASGGQHSLVLACDGTVWTWGEN 844

Query: 56   ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG T     P +V  L    IV  A GG   LA+   G  +AWG N  GQ G+ 
Sbjct: 845  QRGQLGDGTTSARVAPGRVEGLEG--IVAVAGGGDTSLALRSDGTVWAWGANASGQVGD- 901

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
                   G +   D + P+R      V  +A G +H++ +  +G VW WG     Q    
Sbjct: 902  -------GTV--EDRLTPRRIEALSDVMVIALGESHALAVGEDGTVWAWGANASGQLGDG 952

Query: 165  GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            G+   + +P RV+GLE V  +A G   +LA+++DG  WAWG NE GQLG G  Q R  P 
Sbjct: 953  GETPSL-LPARVKGLEGVGSVAAGRAFSLAVRDDGTAWAWGANESGQLGDGSNQSRRVPH 1011

Query: 225  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
             V  + GL  V  +AG  H+ AL +DG V+ WG    G+LG G     + M PQ+V  L+
Sbjct: 1012 RVASVKGLRAV--SAGAHHAMALGEDGAVWAWGDNTLGQLGDG-TSAFTVMWPQRVAELS 1068

Query: 285  GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
              D+  V+ G   SVA+  DG  FS+G  ++G+LG G+      P EV I
Sbjct: 1069 --DVESVAAGEQFSVAVAHDGTAFSWGSNEYGQLGDGKTGPRLSPAEVKI 1116



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 172/348 (49%), Gaps = 42/348 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           S+ AWG    GQLG G   ER     V  L    VR+V A   +S+A+            
Sbjct: 437 SVWAWGRNSYGQLGDGTVTERHVPVRVPGLP--SVRAVAAAGHHSIAVAMDGTVWTWGRN 494

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T+    P  V+ L  T ++  A GG H LA+   G  +AWG N  GQ G+ 
Sbjct: 495 AAGQLGDGTTRDRARPVAVSGL--TSVLAIAAGGSHVLALRSDGDVWAWGYNALGQLGDG 552

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
                        D + P R      ++ VAAG   S+ L  +G VWTWG+ +       
Sbjct: 553 TSG----------DKLTPVRVPGLAPIQSVAAGTYFSMALANDGTVWTWGEGFEGQLGDG 602

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G ++++S PV V+GL  ++ I+VG+ H LA++ DG +WAWG+N  GQLG G    R  P+
Sbjct: 603 GGVQRLS-PVAVKGLSDIRNISVGSAHALAVRGDGTVWAWGDNNEGQLGDGSWMDRFAPV 661

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V+ L+G+T V  + G  HS AL  DG V  WG   +G+L  GD   +S+++P  +  L+
Sbjct: 662 QVRNLTGITAV--SGGRSHSLALHADGTVRAWGSNGYGQL--GDGTLTSRVLPSVIPGLS 717

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G  I  +  G  H +AL  D  +  +G    G+LG G    + +P++V
Sbjct: 718 G--IQALHPGHLHVLALHADKTLRGWGYNRFGQLGLGAAGWSARPVQV 763



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 165/352 (46%), Gaps = 40/352 (11%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV-------------------AG 46
            +  +WGS E GQLG G    R     VK +   K R+VV                   A 
Sbjct: 1088 TAFSWGSNEYGQLGDGKTGPRLSPAEVK-IGGSKARTVVTVGAWGQHAVALMADGTLQAW 1146

Query: 47   SRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
              N+     DG T   + P ++  +  T++   + G WH LA+   G  +AWG N +GQ 
Sbjct: 1147 GDNATGQLGDGTTTRRSSPGEIRGV--TRVTAVSTGAWHSLALRLDGTVWAWGANGFGQL 1204

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G+        G    R + +P +    ++   +AAGG HSV +  +G VWTWG       
Sbjct: 1205 GD--------GTTTARAVPVPVQGLRDVVA--IAAGGYHSVAVRSDGTVWTWGYNTFGQL 1254

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              G  +  ++PV+V  LE V+ +  G  H+LAL  DG +  WG+N  GQLG G    R  
Sbjct: 1255 GDGTSESRALPVQVHKLEGVQAVTGGDHHSLALHADGTVSGWGHNASGQLGDGSRTDRYT 1314

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            P+ ++ + GLT  ++ AG  H+ AL  DG V+ WG   HG+LG G      ++VP+ V+ 
Sbjct: 1315 PVRLKDVDGLT--EVRAGAAHTVALGKDGTVWTWGDNAHGQLGDGVTGPRMRLVPKPVSG 1372

Query: 283  LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            L       +  G  HS A   +   F++GR  HG+LG G      +P  + +
Sbjct: 1373 LPAA--TAIGAGAWHSFASGPEEGAFTWGRNSHGQLGVGDNAPRAEPQRMKL 1422



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 161/338 (47%), Gaps = 42/338 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
            ++ AWG    GQLG G    R     ++ +   +V +V  G+ +SLA+            
Sbjct: 1142 TLQAWGDNATGQLGDGTTTRRSSPGEIRGVT--RVTAVSTGAWHSLALRLDGTVWAWGAN 1199

Query: 54   ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG T    +P  V  L +  +V  A GG+H +AV   G  + WG N +GQ G+ 
Sbjct: 1200 GFGQLGDGTTTARAVPVPVQGLRD--VVAIAAGGYHSVAVRSDGTVWTWGYNTFGQLGDG 1257

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                            +P +      V+ V  G  HS+ L  +G V  WG         G
Sbjct: 1258 TSESR----------ALPVQVHKLEGVQAVTGGDHHSLALHADGTVSGWGHNASGQLGDG 1307

Query: 166  DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ--P 223
                   PVR++ ++ +  +  GA H +AL +DG +W WG+N +GQLG G T PR +  P
Sbjct: 1308 SRTDRYTPVRLKDVDGLTEVRAGAAHTVALGKDGTVWTWGDNAHGQLGDGVTGPRMRLVP 1367

Query: 224  IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             PV GL   T   I AG WHS A   +   + WGR  HG+LG GDN  + +  PQ++ LL
Sbjct: 1368 KPVSGLPAATA--IGAGAWHSFASGPEEGAFTWGRNSHGQLGVGDN--APRAEPQRMKLL 1423

Query: 284  AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            +G  +  ++ G   S+A+T++G + S+G   HG LG G
Sbjct: 1424 SGLKV--IAGGADTSLAMTQEGVLMSWGSSLHGTLGLG 1459



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 168/353 (47%), Gaps = 42/353 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ +WG+   GQLG+G   +R     +  L    + SV AG+ +++A+  DG   T    
Sbjct: 237 AVSSWGANSFGQLGLGTFTQRLSPERIPTLS--GITSVAAGTYHAVALGKDGTVWTWGSN 294

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         +P+ +  +   + V +   G   LA+ + G   AWG N  GQ G+ 
Sbjct: 295 SSGQLGDGTWNDRAVPAPLPGVGGARAVASLDAG--SLALLEGGDVLAWGANNSGQLGDG 352

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
                 T  +      +P+  A    V  V  G  H++ L ++G +W WG     Q    
Sbjct: 353 DTADRSTPSL------VPELSA----VTAVVGGAQHALALRKDGTLWAWGGGLAGQLGHG 402

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G  + + VP  V GL  V  +A G+FH+LA  EDG++WAWG N YGQLG G    R  P+
Sbjct: 403 GSERHV-VPATVMGLTNVTSMATGSFHSLAALEDGSVWAWGRNSYGQLGDGTVTERHVPV 461

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL   ++  +AA G HS A+  DG V+ WGR   G+L  GD     +  P  V+ L 
Sbjct: 462 RVPGLP--SVRAVAAAGHHSIAVAMDGTVWTWGRNAAGQL--GDGTTRDRARPVAVSGL- 516

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
              ++ ++ GG+H +AL  DG ++++G    G+LG G       P+ VP   P
Sbjct: 517 -TSVLAIAAGGSHVLALRSDGDVWAWGYNALGQLGDGTSGDKLTPVRVPGLAP 568



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/261 (35%), Positives = 129/261 (49%), Gaps = 19/261 (7%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           ++ A G  H L +   G  +AWGGN  GQ G         G       + P R      +
Sbjct: 69  MRIAAGAQHSLFLTPTGAVWAWGGNSAGQLG---------GADTSFQRLSPARLPVLEDI 119

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
             V +G  HS+ L  +G VWTWG         G     + P RV+G   V  +A G FH+
Sbjct: 120 VSVVSGDAHSLALGADGTVWTWGSNSSGQLGDGTTTDRAEPQRVEGFTDVVAVAAGDFHS 179

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           L L+ DG +WAWG N +GQLG G TQ    P PV GL G  +V +AAG   + A+  DG 
Sbjct: 180 LVLKSDGTVWAWGTNFHGQLGQGHTQTGLWPKPVPGLEG--VVALAAGFDFTLAVHADGA 237

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V  WG    G+LG G   +  ++ P+++  L+G  I  V+ G  H+VAL +DG ++++G 
Sbjct: 238 VSSWGANSFGQLGLGTFTQ--RLSPERIPTLSG--ITSVAAGTYHAVALGKDGTVWTWGS 293

Query: 313 GDHGRLGYGRKVTTGQPMEVP 333
              G+LG G       P  +P
Sbjct: 294 NSSGQLGDGTWNDRAVPAPLP 314



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 182/425 (42%), Gaps = 83/425 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           +  T ++ AWG    GQLG G +   + +   +      + SVV+G  +SLA+       
Sbjct: 81  LTPTGAVWAWGGNSAGQLG-GADTSFQRLSPARLPVLEDIVSVVSGDAHSLALGADGTVW 139

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T     P +V     T +V  A G +H L +   G  +AWG N +G
Sbjct: 140 TWGSNSSGQLGDGTTTDRAEPQRVEGF--TDVVAVAAGDFHSLVLKSDGTVWAWGTNFHG 197

Query: 105 QCGEEPERKD-------------------DTGRILRRDIVIP----------------QR 129
           Q G+   +                     D    +  D  +                 QR
Sbjct: 198 QLGQGHTQTGLWPKPVPGLEGVVALAAGFDFTLAVHADGAVSSWGANSFGQLGLGTFTQR 257

Query: 130 CAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
            +P+ I     +  VAAG  H+V L ++G VWTWG         G     +VP  + G+ 
Sbjct: 258 LSPERIPTLSGITSVAAGTYHAVALGKDGTVWTWGSNSSGQLGDGTWNDRAVPAPLPGVG 317

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
             + +A     +LAL E G + AWG N  GQLG GDT  RS P  V  LS +T V    G
Sbjct: 318 GARAVASLDAGSLALLEGGDVLAWGANNSGQLGDGDTADRSTPSLVPELSAVTAV--VGG 375

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H+ AL  DG ++ WG G  G+LG G +++   +VP  V  L   ++  ++ G  HS+A
Sbjct: 376 AQHALALRKDGTLWAWGGGLAGQLGHGGSER--HVVPATVMGL--TNVTSMATGSFHSLA 431

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
              DG ++++GR  +G+LG G       P+ VP  +P+ R              VA  G 
Sbjct: 432 ALEDGSVWAWGRNSYGQLGDGTVTERHVPVRVP-GLPSVRA-------------VAAAGH 477

Query: 361 HTLAI 365
           H++A+
Sbjct: 478 HSIAV 482



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 179/391 (45%), Gaps = 62/391 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           +A+  ++  WG G +GQLG G   +R     VK L    +R++  GS ++LA+       
Sbjct: 582 LANDGTVWTWGEGFEGQLGDGGGVQRLSPVAVKGLS--DIRNISVGSAHALAVRGDGTVW 639

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG       P QV  L  T I   + G  H LA+   G   AWG N YG
Sbjct: 640 AWGDNNEGQLGDGSWMDRFAPVQVRNL--TGITAVSGGRSHSLALHADGTVRAWGSNGYG 697

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G+        G +  R  V+P        ++ +  G  H + L  +  +  WG     
Sbjct: 698 QLGD--------GTLTSR--VLPSVIPGLSGIQALHPGHLHVLALHADKTLRGWGY---- 743

Query: 165 GDIKQISV--------PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
               Q+ +        PV+V+G+ +V+ +A G  H L ++ DG++ AWG N  GQLG G 
Sbjct: 744 NRFGQLGLGAAGWSARPVQVRGIGRVERLAAGRAHALLVRADGSVVAWGANASGQLGDGG 803

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T   ++ + V+G+S      +A+GG HS  L  DG V+ WG  + G+L  GD   S+++ 
Sbjct: 804 TTHGARAVTVRGVS--CARSVASGGQHSLVLACDGTVWTWGENQRGQL--GDGTTSARVA 859

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P +V  L  E IV V+ GG  S+AL  DG ++++G    G++G G    T +    P  I
Sbjct: 860 PGRVEGL--EGIVAVAGGGDTSLALRSDGTVWAWGANASGQVGDG----TVEDRLTPRRI 913

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            A  +            ++A G  H LA+ E
Sbjct: 914 EALSD----------VMVIALGESHALAVGE 934



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVK 183
           R A  L   ++AAG  HS+ LT  G VW W     GQ        Q   P R+  LE + 
Sbjct: 61  RLAEPLSPMRIAAGAQHSLFLTPTGAVWAWGGNSAGQLGGADTSFQRLSPARLPVLEDIV 120

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            +  G  H+LAL  DG +W WG+N  GQLG G T  R++P  V+G +   +V +AAG +H
Sbjct: 121 SVVSGDAHSLALGADGTVWTWGSNSSGQLGDGTTTDRAEPQRVEGFT--DVVAVAAGDFH 178

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S  L  DG V+ WG   HG+LG G     + + P+ V  L  E +V ++ G   ++A+  
Sbjct: 179 SLVLKSDGTVWAWGTNFHGQLGQGHTQ--TGLWPKPVPGL--EGVVALAAGFDFTLAVHA 234

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           DG + S+G    G+LG G       P  +P
Sbjct: 235 DGAVSSWGANSFGQLGLGTFTQRLSPERIP 264



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 28/239 (11%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
            S  ++  WG    GQLG G +E R     V  LE   V++V  G  +SLA+  DG     
Sbjct: 1239 SDGTVWTWGYNTFGQLGDGTSESRALPVQVHKLE--GVQAVTGGDHHSLALHADGTVSGW 1296

Query: 62   -ENIPSQVNALSNTK------------IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
              N   Q+   S T             + +   G  H +A+   G  + WG N +GQ G+
Sbjct: 1297 GHNASGQLGDGSRTDRYTPVRLKDVDGLTEVRAGAAHTVALGKDGTVWTWGDNAHGQLGD 1356

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                   TG  +R   ++P+  +       + AG  HS     E   +TWG+        
Sbjct: 1357 GV-----TGPRMR---LVPKPVSGLPAATAIGAGAWHSFASGPEEGAFTWGRNSHGQLGV 1408

Query: 165  GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            GD    + P R++ L  +K+IA GA  +LA+ ++G L +WG++ +G LG G    R+ P
Sbjct: 1409 GDNAPRAEPQRMKLLSGLKVIAGGADTSLAMTQEGVLMSWGSSLHGTLGLGVLGQRASP 1467


>gi|337751269|ref|YP_004645431.1| hypothetical protein KNP414_07049 [Paenibacillus mucilaginosus
           KNP414]
 gi|336302458|gb|AEI45561.1| hypothetical protein KNP414_07049 [Paenibacillus mucilaginosus
           KNP414]
          Length = 404

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 177/343 (51%), Gaps = 48/343 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------KTKTE 62
           W +G +    +GN  E++     K  E Y V S+ +   ++LAI   G        +K E
Sbjct: 56  WTTGRNNVGQLGNGTEKDSSYFGKVDELYDVVSLDSDMDHTLAITKHGTVWGWGYNSKGE 115

Query: 63  ------NI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
                 NI  P Q+N L +  IVQ + G  H LA+D  G  ++WG N YGQ G       
Sbjct: 116 ITEGGKNIARPVQINGLKD--IVQVSTGLVHSLALDQSGAVWSWGENIYGQLGNGT---- 169

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
                  +D  IP +      +  + AG  HS+ L+ +G VW WG+        G+ ++ 
Sbjct: 170 ------NQDSSIPTKVEFLSNIVAIEAGAEHSLALSNDGKVWAWGRNEFGQLGNGETEKS 223

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT------------Q 218
           ++P  V+ LE +++IA G  H+LAL  DGA+WAWG N  GQ+G G +            +
Sbjct: 224 NIPRLVKNLENIEMIAGGDNHSLALDHDGAIWAWGYNSNGQIGDGSSNVYEKDGQLREKR 283

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            +++P+ + GL G  +  ++AG  HSTALT++GEVY WG  E+G+LG G   K SK VP 
Sbjct: 284 NKTEPVKLNGLYG-KVKQVSAGIKHSTALTENGEVYAWGWNEYGQLGNGSM-KDSK-VPL 340

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           + N+  G  I+ +  G  HS A+   G I+++G   +G+LG G
Sbjct: 341 RNNV--GRSIIDIETGSYHSFAVDESGVIYAWGDATYGQLGDG 381



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 44/334 (13%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           RN++    +G  K  +   +V+ L +   + + +   H LA+   G  + WG N  G+  
Sbjct: 60  RNNVGQLGNGTEKDSSYFGKVDELYDVVSLDSDMD--HTLAITKHGTVWGWGYNSKGEIT 117

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
           E             ++I  P +      + QV+ G  HS+ L + G VW+WG+       
Sbjct: 118 EGG-----------KNIARPVQINGLKDIVQVSTGLVHSLALDQSGAVWSWGENIYGQLG 166

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G  +  S+P +V+ L  +  I  GA H+LAL  DG +WAWG NE+GQLG G+T+  + P
Sbjct: 167 NGTNQDSSIPTKVEFLSNIVAIEAGAEHSLALSNDGKVWAWGRNEFGQLGNGETEKSNIP 226

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND----------KSS 273
             V+ L  + +  IA G  HS AL  DG ++ WG   +G++G G ++          K +
Sbjct: 227 RLVKNLENIEM--IAGGDNHSLALDHDGAIWAWGYNSNGQIGDGSSNVYEKDGQLREKRN 284

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           K  P K+N L G+ + QVS G  HS ALT +G ++++G  ++G+LG G      +  +VP
Sbjct: 285 KTEPVKLNGLYGK-VKQVSAGIKHSTALTENGEVYAWGWNEYGQLGNGSM----KDSKVP 339

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +     R+  D          +  G  H+ A+ E
Sbjct: 340 LRNNVGRSIID----------IETGSYHSFAVDE 363



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 156/301 (51%), Gaps = 28/301 (9%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           T +V    GG+    +   G  +  G N  GQ G   E+  D+    + D +        
Sbjct: 34  TSVVSINAGGYVSTILRSDGTVWTTGRNNVGQLGNGTEK--DSSYFGKVDELYD------ 85

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI----KQISVPVRVQGLEQVKLIAVGA 189
             V  + +   H++ +T+ G VW WG     G+I    K I+ PV++ GL+ +  ++ G 
Sbjct: 86  --VVSLDSDMDHTLAITKHGTVWGWGYN-SKGEITEGGKNIARPVQINGLKDIVQVSTGL 142

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H+LAL + GA+W+WG N YGQLG G  Q  S P  V+ LS   +V I AG  HS AL++
Sbjct: 143 VHSLALDQSGAVWSWGENIYGQLGNGTNQDSSIPTKVEFLS--NIVAIEAGAEHSLALSN 200

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG+V+ WGR E G+LG G+ +KS+  +P+ V  L  E+I  ++ G  HS+AL  DG I++
Sbjct: 201 DGKVWAWGRNEFGQLGNGETEKSN--IPRLVKNL--ENIEMIAGGDNHSLALDHDGAIWA 256

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI---AKLVACGGRHTLAIV 366
           +G   +G++G G    +    E    +   RN  + V    +    K V+ G +H+ A+ 
Sbjct: 257 WGYNSNGQIGDG----SSNVYEKDGQLREKRNKTEPVKLNGLYGKVKQVSAGIKHSTALT 312

Query: 367 E 367
           E
Sbjct: 313 E 313



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 33/245 (13%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G  +  +IP++V  LSN   ++A  G  H LA+ + G+ +AWG NE+GQ G     K +
Sbjct: 167 NGTNQDSSIPTKVEFLSNIVAIEA--GAEHSLALSNDGKVWAWGRNEFGQLGNGETEKSN 224

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-------- 167
                     IP+       +  +A G  HS+ L  +G +W WG     G I        
Sbjct: 225 ----------IPRLVKNLENIEMIAGGDNHSLALDHDGAIWAWGYN-SNGQIGDGSSNVY 273

Query: 168 ---------KQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                    +  + PV++ GL  +VK ++ G  H+ AL E+G ++AWG NEYGQLG G  
Sbjct: 274 EKDGQLREKRNKTEPVKLNGLYGKVKQVSAGIKHSTALTENGEVYAWGWNEYGQLGNGSM 333

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             +   +P++   G +++DI  G +HS A+ + G +Y WG   +G+LG G   K    + 
Sbjct: 334 --KDSKVPLRNNVGRSIIDIETGSYHSFAVDESGVIYAWGDATYGQLGDGTFGKDGNRIT 391

Query: 278 QKVNL 282
             V +
Sbjct: 392 YMVRM 396



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 31/232 (13%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           +WG    GQLG G N++      V+ L    + ++ AG+ +SLA+ +DGK          
Sbjct: 156 SWGENIYGQLGNGTNQDSSIPTKVEFLS--NIVAIEAGAEHSLALSNDGKVWAWGRNEFG 213

Query: 59  ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                 T+  NIP  V  L N +++  A G  H LA+D  G  +AWG N  GQ G+    
Sbjct: 214 QLGNGETEKSNIPRLVKNLENIEMI--AGGDNHSLALDHDGAIWAWGYNSNGQIGDGSSN 271

Query: 113 KDDTGRILR--RDIVIPQRCAPKL-IVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
             +    LR  R+   P +       V+QV+AG  HS  LT  G V+ WG  W       
Sbjct: 272 VYEKDGQLREKRNKTEPVKLNGLYGKVKQVSAGIKHSTALTENGEVYAWG--WNEYGQLG 329

Query: 165 -GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
            G +K   VP+R      +  I  G++H+ A+ E G ++AWG+  YGQLG G
Sbjct: 330 NGSMKDSKVPLRNNVGRSIIDIETGSYHSFAVDESGVIYAWGDATYGQLGDG 381


>gi|218190962|gb|EEC73389.1| hypothetical protein OsI_07634 [Oryza sativa Indica Group]
          Length = 448

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 180/357 (50%), Gaps = 45/357 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKAL---EPYKVRSVV-AGSRNSLAICDD------ 56
           + +WG GEDGQLG G+ E+R    V+ A     P  V SVV  G+ ++ A  D+      
Sbjct: 41  VCSWGRGEDGQLGHGDAEDRPVPTVLTAAFDDAPGGVASVVICGADHTTAYSDEELQLYS 100

Query: 57  -----------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      G +     P  + AL   +I Q A G  HCLAV   G  ++WG N+ GQ
Sbjct: 101 WGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQNGQ 160

Query: 106 CGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            G         G     D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W 
Sbjct: 161 LG--------LGNT--EDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWG--WG 208

Query: 164 P------GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                  GD     +P +V  +  +++ L+A G  H + +   G+++ +G ++YGQLG G
Sbjct: 209 RYGNLGLGDRDDRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGHG 268

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           D +    P  ++ L   T+  I+ G  H+ AL  DG++YGWG  + G++G GDN+     
Sbjct: 269 DFEDHLVPHKLEALKDTTISQISGGWRHTMALAADGKLYGWGWNKFGQVGVGDNEDHCS- 327

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            P +VN    + +VQV+CG  H++ALT   ++FS+GRG  G+LG+G  V    P  +
Sbjct: 328 -PVQVNFPNEQKVVQVACGWRHTLALTEAKNVFSWGRGTSGQLGHGEIVDRNIPKMI 383



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 25/298 (8%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
            +V  + G  H +A+   G   +WG  E GQ G      D   R +   +      AP  
Sbjct: 21  SVVLISAGASHSVALLSGGVVCSWGRGEDGQLG----HGDAEDRPVPTVLTAAFDDAPGG 76

Query: 135 IVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLEQVKL--IAV 187
           +   V  G  H+   + E    + W WG       G+   +  P  +Q L+ V++  IA 
Sbjct: 77  VASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIAC 136

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+   G + +WG N+ GQLG G+T+    P  +Q   G+ +  IAAG  H+ A+
Sbjct: 137 GDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAV 196

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+DG++YGWG G +G LG GD D   +++P+KV+ + G+ +V V+CG  H++ ++  G I
Sbjct: 197 TEDGDLYGWGWGRYGNLGLGDRD--DRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSI 254

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +++G   +G+LG+G      +   VP  + A ++             ++ G RHT+A+
Sbjct: 255 YTYGWSKYGQLGHGDF----EDHLVPHKLEALKDT--------TISQISGGWRHTMAL 300



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 147/308 (47%), Gaps = 44/308 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG G+ G+LG GN+ +      ++AL+  ++  +  G  + LA+   G         
Sbjct: 98  LYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQ 157

Query: 58  -------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   T+   +P ++ A    ++   A G  H  AV + G  Y WG   YG  G   
Sbjct: 158 NGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD 217

Query: 111 ERKDDTGRILRRDIVIPQRCAP----KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-- 164
                     R D +IP++ +     K+++  VA G  H++ ++  G ++T+G  W    
Sbjct: 218 ----------RDDRLIPEKVSSVNGQKMVL--VACGWRHTITVSSSGSIYTYG--WSKYG 263

Query: 165 ----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               GD +   VP +++ L+   +  I+ G  H +AL  DG L+ WG N++GQ+G GD +
Sbjct: 264 QLGHGDFEDHLVPHKLEALKDTTISQISGGWRHTMALAADGKLYGWGWNKFGQVGVGDNE 323

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
               P+ V   +   +V +A G  H+ ALT+   V+ WGRG  G+LG G  +   + +P+
Sbjct: 324 DHCSPVQVNFPNEQKVVQVACGWRHTLALTEAKNVFSWGRGTSGQLGHG--EIVDRNIPK 381

Query: 279 KVNLLAGE 286
            ++ L+ +
Sbjct: 382 MIDALSSD 389



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 27/254 (10%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D  +P+  AP+  V  ++AG +HSV L   G V +WG+        GD +   VP  +  
Sbjct: 11  DEAVPE--APERSVVLISAGASHSVALLSGGVVCSWGRGEDGQLGHGDAEDRPVPTVLTA 68

Query: 179 LEQ------VKLIAVGAFHNLALQ-EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
                      ++  GA H  A   E+  L++WG  ++G+LG G++     P P+Q L G
Sbjct: 69  AFDDAPGGVASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQG 128

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           + +  IA G  H  A+T  G V+ WGR ++G+LG G+ + S  ++PQK+    G  +  +
Sbjct: 129 VRITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDS--LLPQKIQAFEGVRVKMI 186

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + G  H+ A+T DG ++ +G G +G LG G +     P +V     +  N    V     
Sbjct: 187 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRDDRLIPEKV-----SSVNGQKMV----- 236

Query: 352 AKLVACGGRHTLAI 365
             LVACG RHT+ +
Sbjct: 237 --LVACGWRHTITV 248


>gi|357149503|ref|XP_003575134.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Brachypodium
           distachyon]
          Length = 448

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 181/359 (50%), Gaps = 40/359 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV-AGSRNSLAICDD--- 56
           + S+ ++ +WG GEDGQLG G+ E+R    ++   +   + SVV  G+ ++ A  D+   
Sbjct: 35  LLSSKAVCSWGRGEDGQLGHGDAEDRPVPTLLSGFDVPGIASVVICGADHTTAYSDEQMQ 94

Query: 57  --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                         G +     P  + AL   KI Q A G  HCLAV D G+ ++WG N+
Sbjct: 95  LYSWGWGDFGRLGHGNSSDVFHPQPIEALQGIKIKQIACGDSHCLAVTDAGQVHSWGRNQ 154

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHV--WTW 158
            GQ G         G     D ++PQ+      + V+ +AAG  H+  +  +G +  W W
Sbjct: 155 NGQLG--------LGNT--EDSLLPQKIHAFEGVCVKMIAAGAEHTAAILEDGDLYGWGW 204

Query: 159 GQ--PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           GQ      GD     VP +V  +E  ++ L+A G  H + +   G L+ +G ++YGQLG 
Sbjct: 205 GQYGNLGLGDRNDRLVPEKVSSVEGEKMVLVACGWRHTVTVSSSGDLYTYGWSKYGQLGH 264

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSS 273
           GD +    P  ++ L    +  IA G  H+ A+  DG++YGWG  + G++G  DN D  S
Sbjct: 265 GDFEDHLVPHKLEALKDRFISQIAGGWRHTMAVAGDGKLYGWGWNKFGQVGVADNVDHCS 324

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              P +V     + + QV+CG  H++ALT + ++FS+GRG  G+LG+G  +    P  +
Sbjct: 325 ---PVQVIFPDEQKVAQVACGWRHTLALTENKNVFSWGRGTSGQLGHGEIIDRNTPKMI 380



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           D K +      +V       +   + G  H +A+       +WG  E GQ G   + +D 
Sbjct: 2   DAKAEAAAGDEEVPEAPEQTVALVSAGANHSVALLSSKAVCSWGRGEDGQLGH-GDAEDR 60

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQI 170
               L     +P       I   V  G  H+   + E    + W WG       G+   +
Sbjct: 61  PVPTLLSGFDVPG------IASVVICGADHTTAYSDEQMQLYSWGWGDFGRLGHGNSSDV 114

Query: 171 SVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             P  ++ L+ +K+  IA G  H LA+ + G + +WG N+ GQLG G+T+    P  +  
Sbjct: 115 FHPQPIEALQGIKIKQIACGDSHCLAVTDAGQVHSWGRNQNGQLGLGNTEDSLLPQKIHA 174

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
             G+ +  IAAG  H+ A+ +DG++YGWG G++G LG G  D++ ++VP+KV+ + GE +
Sbjct: 175 FEGVCVKMIAAGAEHTAAILEDGDLYGWGWGQYGNLGLG--DRNDRLVPEKVSSVEGEKM 232

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V V+CG  H+V ++  G ++++G   +G+LG+G      +   VP  + A ++       
Sbjct: 233 VLVACGWRHTVTVSSSGDLYTYGWSKYGQLGHGDF----EDHLVPHKLEALKD------- 281

Query: 349 RWIAKLVACGGRHTLAI 365
           R+I++ +A G RHT+A+
Sbjct: 282 RFISQ-IAGGWRHTMAV 297



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 34/248 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG  ++GQLG+GN E+      + A E   V+ + AG+ ++ AI +DG         
Sbjct: 147 VHSWGRNQNGQLGLGNTEDSLLPQKIHAFEGVCVKMIAAGAEHTAAILEDGDLYGWGWGQ 206

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P +V+++   K+V  A G  H + V   G  Y +G ++YGQ G   
Sbjct: 207 YGNLGLGDRNDRLVPEKVSSVEGEKMVLVACGWRHTVTVSSSGDLYTYGWSKYGQLGHGD 266

Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                       D ++P +        + Q+A G  H++ +  +G ++ WG     Q   
Sbjct: 267 ----------FEDHLVPHKLEALKDRFISQIAGGWRHTMAVAGDGKLYGWGWNKFGQVGV 316

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             ++   S V V     ++V  +A G  H LAL E+  +++WG    GQLG G+   R+ 
Sbjct: 317 ADNVDHCSPVQVIFPDEQKVAQVACGWRHTLALTENKNVFSWGRGTSGQLGHGEIIDRNT 376

Query: 223 PIPVQGLS 230
           P  +  LS
Sbjct: 377 PKMIDALS 384



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +  VS G  HSVAL     + S+GRG+ G+LG+G      +   VP  +        G
Sbjct: 20  QTVALVSAGANHSVALLSSKAVCSWGRGEDGQLGHG----DAEDRPVPTLL-------SG 68

Query: 346 VDRRWIAKLVACGGRHTLAIVEWQTE 371
            D   IA +V CG  HT A  + Q +
Sbjct: 69  FDVPGIASVVICGADHTTAYSDEQMQ 94


>gi|148700105|gb|EDL32052.1| hect domain and RLD 4, isoform CRA_b [Mus musculus]
          Length = 1066

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 176/369 (47%), Gaps = 66/369 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           S++ WG+   GQLG+G  +E         LEP +    V                     
Sbjct: 9   SMLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFV--------------------- 41

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
                  N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D  
Sbjct: 42  -------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD-- 91

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLE 180
                A  ++   VA G  H++ L  +G V+ WG     Q    G  + I VP  ++ L 
Sbjct: 92  -----AQNIVA--VACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLS 144

Query: 181 QVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDI 237
            ++++  A G +H+LAL +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + +
Sbjct: 145 DIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQV 204

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H
Sbjct: 205 AAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDH 262

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           + ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VAC
Sbjct: 263 TAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVAC 310

Query: 358 GGRHTLAIV 366
           G +HT A V
Sbjct: 311 GRQHTSAFV 319



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 161 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 186

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 187 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 245

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 246 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 296

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 297 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 352


>gi|310817521|ref|YP_003949879.1| regulator of chromosome condensation, rcc1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390593|gb|ADO68052.1| Regulator of chromosome condensation, RCC1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 860

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 168/346 (48%), Gaps = 40/346 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------- 53
           I AWG    GQLGIG    RE    V+A     + ++ AG  +SLA+             
Sbjct: 482 IWAWGDNRRGQLGIGITATRE--IPVQATGLASISALAAGDSHSLALRGNGSVWTWGSNA 539

Query: 54  ---CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG        +QV  L  T I   A G  H LA+ + G  + WG N++GQ G+  
Sbjct: 540 YGQLGDGTAIDRATAAQVPGL--TDITALAAGNHHSLALRNDGTVWVWGSNDFGQLGD-- 595

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                 G +  R    P + +    +R V AG  HSV +   G VW WG         G 
Sbjct: 596 ------GTVTSRKT--PVQVSGLSAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGT 647

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           +   ++PV+V GL  V  +AVG +H+LAL+ DG LWAWG N  GQLG G +  +S P  V
Sbjct: 648 VTSRAMPVQVSGLTGVTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQSTPAQV 707

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL+G  ++ +AAG  HS AL  DG V+GWG    G+L  GD   + +  P +V  L   
Sbjct: 708 PGLTG--VIALAAGNGHSLALRTDGTVWGWGANSFGQL--GDGTTTPRSTPTQVPGL--T 761

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +++ ++ G  ++VAL  +  ++ +G    G+LG G       P++V
Sbjct: 762 NVIALNAGAFYTVALRSERSVWEWGSKSAGQLGDGTVTQKTTPVQV 807



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 166/354 (46%), Gaps = 42/354 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG    GQLG G    R     V  L    + ++  G  +S+A+  DG   
Sbjct: 426 LKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQVSGLA--AITALATGDGHSVAVGSDGGIW 483

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T T  IP Q   L++  I   A G  H LA+   G  + WG N YG
Sbjct: 484 AWGDNRRGQLGIGITATREIPVQATGLAS--ISALAAGDSHSLALRGNGSVWTWGSNAYG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           Q G+        G  + R         P L  +  +AAG  HS+ L  +G VW WG    
Sbjct: 542 QLGD--------GTAIDRATAAQ---VPGLTDITALAAGNHHSLALRNDGTVWVWGSNDF 590

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G +     PV+V GL  ++ +  G  H++A+  +G +W WGNN++GQLG G    
Sbjct: 591 GQLGDGTVTSRKTPVQVSGLSAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGTVTS 650

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P+ V GL+G+T V  A G +HS AL +DG ++ WG    G+LG G +   S   P +
Sbjct: 651 RAMPVQVSGLTGVTAV--AVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQST--PAQ 706

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           V  L G  ++ ++ G  HS+AL  DG ++ +G    G+LG G       P +VP
Sbjct: 707 VPGLTG--VIALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRSTPTQVP 758



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 145/298 (48%), Gaps = 39/298 (13%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G       P QV  L++   V A+    H LA+   G  +AWG N YGQ G+  + +  
Sbjct: 178 NGTATDRATPVQVPGLTSVMAVAASEA--HSLALRSDGTVWAWGDNGYGQLGDGTKAQRT 235

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGG--------THSVVLTREGHVWTWGQPWP---- 163
           T          P +      V  +AAGG         HS+ L  +G VW WG        
Sbjct: 236 T----------PVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLG 285

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G   + + PV+V GL  V  +A GAFH+LAL++DG +WAWGNN  GQLG G T  R  P
Sbjct: 286 DGTTTERATPVQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNNSSGQLGDGTTTARPTP 345

Query: 224 IPVQGLSGLTLVDIAAGGW---------HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           + V GL+  +++ +AAGG          HS AL  DG V+ WG     +  FGD   +++
Sbjct: 346 VQVPGLT--SVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSRQ--FGDGMPATR 401

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             P +V+ L G     +  G  H+V L  DG ++++G    G+LG G      +PM+V
Sbjct: 402 TTPVQVSELTGG--TALVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQV 457



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 164/357 (45%), Gaps = 51/357 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G   ER     V+ L    V ++ AG+ +SLA+ DDG        
Sbjct: 272 TVWAWGDNSAGQLGDGTTTER--ATPVQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNN 329

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIG-------GWHCLAVDDQGRAYAWGGNE 102
                    T     P QV  L++   V A  G       G H LA+   G  +AWG N 
Sbjct: 330 SSGQLGDGTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNL 389

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
             Q G+       T          P + +       + AG  H+VVL  +G VW WG   
Sbjct: 390 SRQFGDGMPATRTT----------PVQVSELTGGTALVAGDLHAVVLKSDGTVWAWGDN- 438

Query: 163 PPGDIKQISVPVR-----VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
             G + +   PVR     V GL  +  +A G  H++A+  DG +WAWG+N  GQLG G T
Sbjct: 439 SSGQLGEGVTPVRAKPMQVSGLAAITALATGDGHSVAVGSDGGIWAWGDNRRGQLGIGIT 498

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD--NDKSSKM 275
             R  P+   GL+ ++   +AAG  HS AL  +G V+ WG   +G+LG G   +  ++  
Sbjct: 499 ATREIPVQATGLASISA--LAAGDSHSLALRGNGSVWTWGSNAYGQLGDGTAIDRATAAQ 556

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           VP         DI  ++ G  HS+AL  DG ++ +G  D G+LG G   +   P++V
Sbjct: 557 VPGLT------DITALAAGNHHSLALRNDGTVWVWGSNDFGQLGDGTVTSRKTPVQV 607



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 165/363 (45%), Gaps = 53/363 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREW------VCVVKALEPYKVRSVVAGSRNSLAI------ 53
           ++ AWG    GQLG G   +R        +  V AL      + VA S +SLA+      
Sbjct: 214 TVWAWGDNGYGQLGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTV 273

Query: 54  ----------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                       DG T     P QV  L  T +   A G +H LA+ D G  +AWG N  
Sbjct: 274 WAWGDNSAGQLGDGTTTERATPVQVLGL--TSVTALAAGAFHSLALRDDGTVWAWGNNSS 331

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---------GTHSVVLTREGH 154
           GQ G+       T          P +      V  VAAG         G HS+ L  +G 
Sbjct: 332 GQLGDGTTTARPT----------PVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGT 381

Query: 155 VWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           VW WG    + +  G     + PV+V  L     +  G  H + L+ DG +WAWG+N  G
Sbjct: 382 VWAWGYNLSRQFGDGMPATRTTPVQVSELTGGTALVAGDLHAVVLKSDGTVWAWGDNSSG 441

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G T  R++P+ V GL+ +T   +A G  HS A+  DG ++ WG    G+LG G   
Sbjct: 442 QLGEGVTPVRAKPMQVSGLAAITA--LATGDGHSVAVGSDGGIWAWGDNRRGQLGIGIT- 498

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            +++ +P +   LA   I  ++ G +HS+AL  +G ++++G   +G+LG G  +      
Sbjct: 499 -ATREIPVQATGLA--SISALAAGDSHSLALRGNGSVWTWGSNAYGQLGDGTAIDRATAA 555

Query: 331 EVP 333
           +VP
Sbjct: 556 QVP 558



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 127/269 (47%), Gaps = 37/269 (13%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G  +AWG N  GQ G               D   P +      V  VAA   
Sbjct: 155 HTLALRRDGTVWAWGFNGSGQLGNGTA----------TDRATPVQVPGLTSVMAVAASEA 204

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVG--------AFHN 192
           HS+ L  +G VW WG         G   Q + PV+V GL  V  +A G        + H+
Sbjct: 205 HSLALRSDGTVWAWGDNGYGQLGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHS 264

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL+ DG +WAWG+N  GQLG G T  R+ P+ V GL+ +T   +AAG +HS AL DDG 
Sbjct: 265 LALRSDGTVWAWGDNSAGQLGDGTTTERATPVQVLGLTSVTA--LAAGAFHSLALRDDGT 322

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG---------GTHSVALTR 303
           V+ WG    G+LG    D ++   P  V +     ++ V+ G         G HS+AL  
Sbjct: 323 VWAWGNNSSGQLG----DGTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKS 378

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           DG ++++G     + G G   T   P++V
Sbjct: 379 DGTVWAWGYNLSRQFGDGMPATRTTPVQV 407



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 156/361 (43%), Gaps = 53/361 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G   +R     V  L    V +V A   +SLA+  DG        
Sbjct: 164 TVWAWGFNGSGQLGNGTATDRATPVQVPGLT--SVMAVAASEAHSLALRSDGTVWAWGDN 221

Query: 59  --------TKTE-NIPSQVNALSNTKIVQAAIGGW------HCLAVDDQGRAYAWGGNEY 103
                   TK +   P QV  L+    + A   G       H LA+   G  +AWG N  
Sbjct: 222 GYGQLGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSA 281

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQ G+    +  T          P +      V  +AAG  HS+ L  +G VW WG    
Sbjct: 282 GQLGDGTTTERAT----------PVQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNNSS 331

Query: 164 ----PGDIKQISVPVRVQGLEQVKLIAVGAF---------HNLALQEDGALWAWGNNEYG 210
                G       PV+V GL  V  +A G           H+LAL+ DG +WAWG N   
Sbjct: 332 GQLGDGTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSR 391

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           Q G G    R+ P+ V  L+G T   + AG  H+  L  DG V+ WG    G+LG G   
Sbjct: 392 QFGDGMPATRTTPVQVSELTGGTA--LVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTP 449

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             +K  P +V+ LA   I  ++ G  HSVA+  DG I+++G    G+LG G   T   P+
Sbjct: 450 VRAK--PMQVSGLAA--ITALATGDGHSVAVGSDGGIWAWGDNRRGQLGIGITATREIPV 505

Query: 331 E 331
           +
Sbjct: 506 Q 506



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 18/207 (8%)

Query: 139 VAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V+A G H++ L R+G VW WG         G     + PV+V GL  V  +A    H+LA
Sbjct: 149 VSAAGDHTLALRRDGTVWAWGFNGSGQLGNGTATDRATPVQVPGLTSVMAVAASEAHSLA 208

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG--------WHSTA 246
           L+ DG +WAWG+N YGQLG G    R+ P+ V GL+G+T   +AAGG         HS A
Sbjct: 209 LRSDGTVWAWGDNGYGQLGDGTKAQRTTPVQVLGLAGVTA--LAAGGNGTTVAISAHSLA 266

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           L  DG V+ WG    G+LG  D   + +  P  V +L    +  ++ G  HS+AL  DG 
Sbjct: 267 LRSDGTVWAWGDNSAGQLG--DGTTTERATP--VQVLGLTSVTALAAGAFHSLALRDDGT 322

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           ++++G    G+LG G       P++VP
Sbjct: 323 VWAWGNNSSGQLGDGTTTARPTPVQVP 349



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 40/297 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++  WGS + GQLG G    R+    V  L    +R+V AG  +S+A+            
Sbjct: 581 TVWVWGSNDFGQLGDGTVTSRKTPVQVSGLS--AMRAVEAGPAHSVAVHLNGTVWVWGNN 638

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG   +  +P QV+ L  T +   A+G +H LA+ + G  +AWG N  GQ G  
Sbjct: 639 DFGQLGDGTVTSRAMPVQVSGL--TGVTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNG 696

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                 T          P +      V  +AAG  HS+ L  +G VW WG         G
Sbjct: 697 TSGIQST----------PAQVPGLTGVIALAAGNGHSLALRTDGTVWGWGANSFGQLGDG 746

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S P +V GL  V  +  GAF+ +AL+ + ++W WG+   GQLG G    ++ P+ 
Sbjct: 747 TTTPRSTPTQVPGLTNVIALNAGAFYTVALRSERSVWEWGSKSAGQLGDGTVTQKTTPVQ 806

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           V GL+ +T   +AAG  H+ AL  D  V+ WG  + G++G    D ++ ++P  VN+
Sbjct: 807 VSGLTDVTA--LAAGNAHALALRTDRTVWAWGGNQRGQIG----DGTASIMPAPVNV 857


>gi|115373190|ref|ZP_01460491.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369791|gb|EAU68725.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 859

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 168/346 (48%), Gaps = 40/346 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------- 53
           I AWG    GQLGIG    RE    V+A     + ++ AG  +SLA+             
Sbjct: 481 IWAWGDNRRGQLGIGITATRE--IPVQATGLASISALAAGDSHSLALRGNGSVWTWGSNA 538

Query: 54  ---CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG        +QV  L  T I   A G  H LA+ + G  + WG N++GQ G+  
Sbjct: 539 YGQLGDGTAIDRATAAQVPGL--TDITALAAGNHHSLALRNDGTVWVWGSNDFGQLGD-- 594

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                 G +  R    P + +    +R V AG  HSV +   G VW WG         G 
Sbjct: 595 ------GTVTSRKT--PVQVSGLSAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGT 646

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           +   ++PV+V GL  V  +AVG +H+LAL+ DG LWAWG N  GQLG G +  +S P  V
Sbjct: 647 VTSRAMPVQVSGLTGVTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQSTPAQV 706

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL+G  ++ +AAG  HS AL  DG V+GWG    G+L  GD   + +  P +V  L   
Sbjct: 707 PGLTG--VIALAAGNGHSLALRTDGTVWGWGANSFGQL--GDGTTTPRSTPTQVPGL--T 760

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +++ ++ G  ++VAL  +  ++ +G    G+LG G       P++V
Sbjct: 761 NVIALNAGAFYTVALRSERSVWEWGSKSAGQLGDGTVTQKTTPVQV 806



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 166/354 (46%), Gaps = 42/354 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG    GQLG G    R     V  L    + ++  G  +S+A+  DG   
Sbjct: 425 LKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQVSGLA--AITALATGDGHSVAVGSDGGIW 482

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T T  IP Q   L++  I   A G  H LA+   G  + WG N YG
Sbjct: 483 AWGDNRRGQLGIGITATREIPVQATGLAS--ISALAAGDSHSLALRGNGSVWTWGSNAYG 540

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           Q G+        G  + R         P L  +  +AAG  HS+ L  +G VW WG    
Sbjct: 541 QLGD--------GTAIDRATAAQ---VPGLTDITALAAGNHHSLALRNDGTVWVWGSNDF 589

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G +     PV+V GL  ++ +  G  H++A+  +G +W WGNN++GQLG G    
Sbjct: 590 GQLGDGTVTSRKTPVQVSGLSAMRAVEAGPAHSVAVHLNGTVWVWGNNDFGQLGDGTVTS 649

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P+ V GL+G+T V  A G +HS AL +DG ++ WG    G+LG G +   S   P +
Sbjct: 650 RAMPVQVSGLTGVTAV--AVGVYHSLALRNDGTLWAWGYNNVGQLGNGTSGIQST--PAQ 705

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           V  L G  ++ ++ G  HS+AL  DG ++ +G    G+LG G       P +VP
Sbjct: 706 VPGLTG--VIALAAGNGHSLALRTDGTVWGWGANSFGQLGDGTTTPRSTPTQVP 757



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 145/298 (48%), Gaps = 39/298 (13%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G       P QV  L++   V A+    H LA+   G  +AWG N YGQ G+  + +  
Sbjct: 177 NGTATDRATPVQVPGLTSVMAVAASEA--HSLALRSDGTVWAWGDNGYGQLGDGTKAQRT 234

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGG--------THSVVLTREGHVWTWGQPWP---- 163
           T          P +      V  +AAGG         HS+ L  +G VW WG        
Sbjct: 235 T----------PVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSAGQLG 284

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G   + + PV+V GL  V  +A GAFH+LAL++DG +WAWGNN  GQLG G T  R  P
Sbjct: 285 DGTTTERATPVQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNNSSGQLGDGTTTARPTP 344

Query: 224 IPVQGLSGLTLVDIAAGGW---------HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           + V GL+  +++ +AAGG          HS AL  DG V+ WG     +  FGD   +++
Sbjct: 345 VQVPGLT--SVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSRQ--FGDGMPATR 400

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             P +V+ L G     +  G  H+V L  DG ++++G    G+LG G      +PM+V
Sbjct: 401 TTPVQVSELTGG--TALVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTPVRAKPMQV 456



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 164/357 (45%), Gaps = 51/357 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G   ER     V+ L    V ++ AG+ +SLA+ DDG        
Sbjct: 271 TVWAWGDNSAGQLGDGTTTER--ATPVQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNN 328

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIG-------GWHCLAVDDQGRAYAWGGNE 102
                    T     P QV  L++   V A  G       G H LA+   G  +AWG N 
Sbjct: 329 SSGQLGDGTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNL 388

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
             Q G+       T          P + +       + AG  H+VVL  +G VW WG   
Sbjct: 389 SRQFGDGMPATRTT----------PVQVSELTGGTALVAGDLHAVVLKSDGTVWAWGDN- 437

Query: 163 PPGDIKQISVPVR-----VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
             G + +   PVR     V GL  +  +A G  H++A+  DG +WAWG+N  GQLG G T
Sbjct: 438 SSGQLGEGVTPVRAKPMQVSGLAAITALATGDGHSVAVGSDGGIWAWGDNRRGQLGIGIT 497

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD--NDKSSKM 275
             R  P+   GL+ ++   +AAG  HS AL  +G V+ WG   +G+LG G   +  ++  
Sbjct: 498 ATREIPVQATGLASISA--LAAGDSHSLALRGNGSVWTWGSNAYGQLGDGTAIDRATAAQ 555

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           VP         DI  ++ G  HS+AL  DG ++ +G  D G+LG G   +   P++V
Sbjct: 556 VPGLT------DITALAAGNHHSLALRNDGTVWVWGSNDFGQLGDGTVTSRKTPVQV 606



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 165/363 (45%), Gaps = 53/363 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREW------VCVVKALEPYKVRSVVAGSRNSLAI------ 53
           ++ AWG    GQLG G   +R        +  V AL      + VA S +SLA+      
Sbjct: 213 TVWAWGDNGYGQLGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTV 272

Query: 54  ----------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                       DG T     P QV  L  T +   A G +H LA+ D G  +AWG N  
Sbjct: 273 WAWGDNSAGQLGDGTTTERATPVQVLGL--TSVTALAAGAFHSLALRDDGTVWAWGNNSS 330

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---------GTHSVVLTREGH 154
           GQ G+       T          P +      V  VAAG         G HS+ L  +G 
Sbjct: 331 GQLGDGTTTARPT----------PVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGT 380

Query: 155 VWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           VW WG    + +  G     + PV+V  L     +  G  H + L+ DG +WAWG+N  G
Sbjct: 381 VWAWGYNLSRQFGDGMPATRTTPVQVSELTGGTALVAGDLHAVVLKSDGTVWAWGDNSSG 440

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G T  R++P+ V GL+ +T   +A G  HS A+  DG ++ WG    G+LG G   
Sbjct: 441 QLGEGVTPVRAKPMQVSGLAAITA--LATGDGHSVAVGSDGGIWAWGDNRRGQLGIGIT- 497

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            +++ +P +   LA   I  ++ G +HS+AL  +G ++++G   +G+LG G  +      
Sbjct: 498 -ATREIPVQATGLA--SISALAAGDSHSLALRGNGSVWTWGSNAYGQLGDGTAIDRATAA 554

Query: 331 EVP 333
           +VP
Sbjct: 555 QVP 557



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 127/269 (47%), Gaps = 37/269 (13%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G  +AWG N  GQ G               D   P +      V  VAA   
Sbjct: 154 HTLALRRDGTVWAWGFNGSGQLGNGTA----------TDRATPVQVPGLTSVMAVAASEA 203

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVG--------AFHN 192
           HS+ L  +G VW WG         G   Q + PV+V GL  V  +A G        + H+
Sbjct: 204 HSLALRSDGTVWAWGDNGYGQLGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHS 263

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL+ DG +WAWG+N  GQLG G T  R+ P+ V GL+ +T   +AAG +HS AL DDG 
Sbjct: 264 LALRSDGTVWAWGDNSAGQLGDGTTTERATPVQVLGLTSVTA--LAAGAFHSLALRDDGT 321

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG---------GTHSVALTR 303
           V+ WG    G+LG    D ++   P  V +     ++ V+ G         G HS+AL  
Sbjct: 322 VWAWGNNSSGQLG----DGTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKS 377

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           DG ++++G     + G G   T   P++V
Sbjct: 378 DGTVWAWGYNLSRQFGDGMPATRTTPVQV 406



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 156/361 (43%), Gaps = 53/361 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G   +R     V  L    V +V A   +SLA+  DG        
Sbjct: 163 TVWAWGFNGSGQLGNGTATDRATPVQVPGLT--SVMAVAASEAHSLALRSDGTVWAWGDN 220

Query: 59  --------TKTE-NIPSQVNALSNTKIVQAAIGGW------HCLAVDDQGRAYAWGGNEY 103
                   TK +   P QV  L+    + A   G       H LA+   G  +AWG N  
Sbjct: 221 GYGQLGDGTKAQRTTPVQVLGLAGVTALAAGGNGTTVAISAHSLALRSDGTVWAWGDNSA 280

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQ G+    +  T          P +      V  +AAG  HS+ L  +G VW WG    
Sbjct: 281 GQLGDGTTTERAT----------PVQVLGLTSVTALAAGAFHSLALRDDGTVWAWGNNSS 330

Query: 164 ----PGDIKQISVPVRVQGLEQVKLIAVGAF---------HNLALQEDGALWAWGNNEYG 210
                G       PV+V GL  V  +A G           H+LAL+ DG +WAWG N   
Sbjct: 331 GQLGDGTTTARPTPVQVPGLTSVIAVAAGGGDDSLGMRGDHSLALKSDGTVWAWGYNLSR 390

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           Q G G    R+ P+ V  L+G T   + AG  H+  L  DG V+ WG    G+LG G   
Sbjct: 391 QFGDGMPATRTTPVQVSELTGGTA--LVAGDLHAVVLKSDGTVWAWGDNSSGQLGEGVTP 448

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             +K  P +V+ LA   I  ++ G  HSVA+  DG I+++G    G+LG G   T   P+
Sbjct: 449 VRAK--PMQVSGLAA--ITALATGDGHSVAVGSDGGIWAWGDNRRGQLGIGITATREIPV 504

Query: 331 E 331
           +
Sbjct: 505 Q 505



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 18/207 (8%)

Query: 139 VAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V+A G H++ L R+G VW WG         G     + PV+V GL  V  +A    H+LA
Sbjct: 148 VSAAGDHTLALRRDGTVWAWGFNGSGQLGNGTATDRATPVQVPGLTSVMAVAASEAHSLA 207

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG--------WHSTA 246
           L+ DG +WAWG+N YGQLG G    R+ P+ V GL+G+T   +AAGG         HS A
Sbjct: 208 LRSDGTVWAWGDNGYGQLGDGTKAQRTTPVQVLGLAGVTA--LAAGGNGTTVAISAHSLA 265

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           L  DG V+ WG    G+LG  D   + +  P  V +L    +  ++ G  HS+AL  DG 
Sbjct: 266 LRSDGTVWAWGDNSAGQLG--DGTTTERATP--VQVLGLTSVTALAAGAFHSLALRDDGT 321

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           ++++G    G+LG G       P++VP
Sbjct: 322 VWAWGNNSSGQLGDGTTTARPTPVQVP 348



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 40/297 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++  WGS + GQLG G    R+    V  L    +R+V AG  +S+A+            
Sbjct: 580 TVWVWGSNDFGQLGDGTVTSRKTPVQVSGLS--AMRAVEAGPAHSVAVHLNGTVWVWGNN 637

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG   +  +P QV+ L  T +   A+G +H LA+ + G  +AWG N  GQ G  
Sbjct: 638 DFGQLGDGTVTSRAMPVQVSGL--TGVTAVAVGVYHSLALRNDGTLWAWGYNNVGQLGNG 695

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                 T          P +      V  +AAG  HS+ L  +G VW WG         G
Sbjct: 696 TSGIQST----------PAQVPGLTGVIALAAGNGHSLALRTDGTVWGWGANSFGQLGDG 745

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S P +V GL  V  +  GAF+ +AL+ + ++W WG+   GQLG G    ++ P+ 
Sbjct: 746 TTTPRSTPTQVPGLTNVIALNAGAFYTVALRSERSVWEWGSKSAGQLGDGTVTQKTTPVQ 805

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           V GL+ +T   +AAG  H+ AL  D  V+ WG  + G++G    D ++ ++P  VN+
Sbjct: 806 VSGLTDVTA--LAAGNAHALALRTDRTVWAWGGNQRGQIG----DGTASIMPAPVNV 856


>gi|338533363|ref|YP_004666697.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
 gi|337259459|gb|AEI65619.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
          Length = 1379

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 168/347 (48%), Gaps = 38/347 (10%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI- 64
            ++  WG    GQLG G    R     V+ L    V ++ AG  +  A   DG   T  + 
Sbjct: 945  TLWTWGLNSYGQLGGGPLSYRLLPVQVQGL--MSVTAMAAGGYHMAAAGQDGTLWTWGLN 1002

Query: 65   ---------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                           P QV     T +   A G  H LAV   G  ++WGGN YGQ G+ 
Sbjct: 1003 SYGQLGGGPLSQSLTPVQVQVQGLTGVAAIAAGFSHTLAVRQDGTVWSWGGNAYGQLGDG 1062

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-PWPP---G 165
               +  T          P +      V  ++AG  H+V L R+G VW WG+  W     G
Sbjct: 1063 TTAQSLT----------PVQVQGLTGVTAISAGDAHTVALRRDGTVWAWGRNSWGQLGDG 1112

Query: 166  DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 + PV+VQGL  V  IA G+ H +AL++DG +WAWG N +GQLG G T  R+ P+ 
Sbjct: 1113 TTTHRATPVQVQGLTGVIAIAAGSLHTVALRQDGTVWAWGRNSWGQLGDGTTTHRATPVQ 1172

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            VQGL+G  ++ IAAG  H+ AL  DG V+ WG  + G+L  GD   + ++ P +V  L G
Sbjct: 1173 VQGLTG--VIAIAAGSLHTVALRQDGTVWAWGFNDLGQL--GDGTTTRRLTPAQVQGLTG 1228

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +  ++ G  H+ A+ +DG  +++G    G+LG G       P++V
Sbjct: 1229 --VTTIAAGYFHTAAVRQDGTAWTWGFNLWGQLGDGTFTDRATPVQV 1273



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 182/380 (47%), Gaps = 50/380 (13%)

Query: 6   SIIAWGSGEDGQLGIGNN------EEREWVCVVKALEPYKVRSVV--------AGSRNSL 51
           ++ AWGS   GQLG G        E+ + +  V A+    + +V         A   NS 
Sbjct: 291 TLWAWGSNSRGQLGNGTTFGSYRPEQVQGLTGVTAIAASGIHTVALRQDGTLWAWGNNSS 350

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T     P QV  L  T +   A G  + +A    G  +AWG NE+GQ G+   
Sbjct: 351 GQLGDGTTTVRFTPVQVQGL--TGVTAIAAGYLYTVASKQDGTVWAWGDNEWGQLGD--- 405

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDI 167
                G   RR  + P +      V  +AAG  ++V   ++G VW WG         G +
Sbjct: 406 -----GTTTRR--LTPVQVQGLTGVTAIAAGYLYTVASKQDGTVWAWGDNKRSQLGEGAV 458

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            Q   P  VQGLE +  IA      +A+++DG +WAWG+N  GQLG G T  R  P+ VQ
Sbjct: 459 SQRHTPGEVQGLEGITAIAASNLLTVAVRQDGTVWAWGDNARGQLGDGTTTRRLTPVQVQ 518

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+G+T V  AA  +H  A+  DG V+ WG G  G+LG  D     +  P +V  L G  
Sbjct: 519 GLAGVTAV--AASDYHLVAVRQDGTVWAWGVGFWGQLG--DGTGMDRSTPVQVQGLTG-- 572

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +  ++ G  H+VAL +DG ++++G  ++G+LG G       P++VP           GV 
Sbjct: 573 VTAIAAGSNHTVALRQDGTVWAWGFNNYGQLGDGTTAGHLTPVQVP-----------GVT 621

Query: 348 RRWIAKLVACGGRHTLAIVE 367
               A  +A GG HT+A+++
Sbjct: 622 G---AVAIAAGGSHTVALLQ 638



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 160/348 (45%), Gaps = 36/348 (10%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
            ++  WG    GQLG G    R     V+ L      ++ AG  +++A+            
Sbjct: 791  TLWTWGLNSYGQLGGGPLSYRLLPVQVQGLTSATATAIAAGDSHTVAVRQDGTVWAWGSN 850

Query: 54   ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG T     P QV       +   A GG+H  A    G  + WG N YGQ G  
Sbjct: 851  FSGQLGDGTTAQSLTPVQVQVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGG 910

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
            P       R+L      P +    + V  +AAGG H     ++G +WTWG         G
Sbjct: 911  PLSY----RLL------PVQVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGG 960

Query: 166  DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             +    +PV+VQGL  V  +A G +H  A  +DG LW WG N YGQLG G       P+ 
Sbjct: 961  PLSYRLLPVQVQGLMSVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSQSLTPVQ 1020

Query: 226  VQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            VQ + GLT +  IAAG  H+ A+  DG V+ WG   +G+L  GD   +  + P +V  L 
Sbjct: 1021 VQ-VQGLTGVAAIAAGFSHTLAVRQDGTVWSWGGNAYGQL--GDGTTAQSLTPVQVQGLT 1077

Query: 285  GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            G  +  +S G  H+VAL RDG ++++GR   G+LG G       P++V
Sbjct: 1078 G--VTAISAGDAHTVALRRDGTVWAWGRNSWGQLGDGTTTHRATPVQV 1123



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 164/347 (47%), Gaps = 34/347 (9%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
            ++ AWG    GQLG G    R     V+ L    V ++ AG  +  A   DG   T    
Sbjct: 741  TLWAWGDNHWGQLGDGTTTRRLTPVQVQGL--MDVTAMAAGGYHMAAAGQDGTLWTWGLN 798

Query: 62   ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          +P QV  L++      A G  H +AV   G  +AWG N  GQ G+ 
Sbjct: 799  SYGQLGGGPLSYRLLPVQVQGLTSATATAIAAGDSHTVAVRQDGTVWAWGSNFSGQLGD- 857

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                   G   +    +  +    + V  +AAGG H     ++G +WTWG         G
Sbjct: 858  -------GTTAQSLTPVQVQVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGG 910

Query: 166  DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             +    +PV+VQGL  V  +A G +H  A  +DG LW WG N YGQLG G    R  P+ 
Sbjct: 911  PLSYRLLPVQVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSYRLLPVQ 970

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            VQGL  +++  +AAGG+H  A   DG ++ WG   +G+LG G   +S  + P +V +   
Sbjct: 971  VQGL--MSVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSQS--LTPVQVQVQGL 1026

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +  ++ G +H++A+ +DG ++S+G   +G+LG G    +  P++V
Sbjct: 1027 TGVAAIAAGFSHTLAVRQDGTVWSWGGNAYGQLGDGTTAQSLTPVQV 1073



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 164/351 (46%), Gaps = 44/351 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEER---------EWVCVVKALEPYKVR-----SVVAGSRNSL 51
            ++ +WG    GQLG G   +            V  + A + + V      +V A  RNS 
Sbjct: 1047 TVWSWGGNAYGQLGDGTTAQSLTPVQVQGLTGVTAISAGDAHTVALRRDGTVWAWGRNSW 1106

Query: 52   AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                DG T     P QV  L  T ++  A G  H +A+   G  +AWG N +GQ G+   
Sbjct: 1107 GQLGDGTTTHRATPVQVQGL--TGVIAIAAGSLHTVALRQDGTVWAWGRNSWGQLGDGTT 1164

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
                T          P +      V  +AAG  H+V L ++G VW WG      D+ Q+ 
Sbjct: 1165 THRAT----------PVQVQGLTGVIAIAAGSLHTVALRQDGTVWAWG----FNDLGQLG 1210

Query: 172  --------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                     P +VQGL  V  IA G FH  A+++DG  W WG N +GQLG G    R+ P
Sbjct: 1211 DGTTTRRLTPAQVQGLTGVTTIAAGYFHTAAVRQDGTAWTWGFNLWGQLGDGTFTDRATP 1270

Query: 224  IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            + VQGL+G++   +AAG  H+  + +DG V+ WG     +LG G +  + +  P +V  L
Sbjct: 1271 VQVQGLTGVSA--LAAGYAHTVVVGEDGTVWAWGNNSGTQLGNGSS--TDRSTPVQVEAL 1326

Query: 284  AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             G     ++ G  H+VA++ DG  + +GR + G++G G       P+ V +
Sbjct: 1327 TGA--FSLAAGRFHTVAMSPDGAGWGWGRNNLGQVGDGTTADRPTPVNVMV 1375



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 163/345 (47%), Gaps = 36/345 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEER---------EWVCVVKALEPYKVRS-----VVAGSRNSL 51
           ++ AWG  E GQLG G    R           V  + A   Y V S     V A   N  
Sbjct: 391 TVWAWGDNEWGQLGDGTTTRRLTPVQVQGLTGVTAIAAGYLYTVASKQDGTVWAWGDNKR 450

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
           +   +G     + P +V  L     + A+      +AV   G  +AWG N  GQ G+   
Sbjct: 451 SQLGEGAVSQRHTPGEVQGLEGITAIAAS--NLLTVAVRQDGTVWAWGDNARGQLGD--- 505

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW----PPGDI 167
                G   RR  + P +      V  VAA   H V + ++G VW WG  +      G  
Sbjct: 506 -----GTTTRR--LTPVQVQGLAGVTAVAASDYHLVAVRQDGTVWAWGVGFWGQLGDGTG 558

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              S PV+VQGL  V  IA G+ H +AL++DG +WAWG N YGQLG G T     P+ V 
Sbjct: 559 MDRSTPVQVQGLTGVTAIAAGSNHTVALRQDGTVWAWGFNNYGQLGDGTTAGHLTPVQVP 618

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           G++G   V IAAGG H+ AL  DG V+ WG    G+L  GD   + +  P +V  LA  D
Sbjct: 619 GVTG--AVAIAAGGSHTVALLQDGTVWTWGYNIWGQL--GDGTTTHRHSPVQVQGLA--D 672

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ ++    H+VA+ +DG ++++G    G+LG G       P++V
Sbjct: 673 VIAIATNNGHTVAVRQDGTVWTWGLNSSGQLGDGTTTQRLTPVQV 717



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 168/349 (48%), Gaps = 38/349 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG G  GQLG G   +R     V+ L    V ++ AGS +++A+            
Sbjct: 541 TVWAWGVGFWGQLGDGTGMDRSTPVQVQGLT--GVTAIAAGSNHTVALRQDGTVWAWGFN 598

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P QV  +  T  V  A GG H +A+   G  + WG N +GQ G+ 
Sbjct: 599 NYGQLGDGTTAGHLTPVQVPGV--TGAVAIAAGGSHTVALLQDGTVWTWGYNIWGQLGD- 655

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R   +  +    +I   +A    H+V + ++G VWTWG         G
Sbjct: 656 -------GTTTHRHSPVQVQGLADVIA--IATNNGHTVAVRQDGTVWTWGLNSSGQLGDG 706

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q   PV+V GL     I   +   +A+++D  LWAWG+N +GQLG G T  R  P+ 
Sbjct: 707 TTTQRLTPVQVHGLTDATAILTSSSQTVAMRQDRTLWAWGDNHWGQLGDGTTTRRLTPVQ 766

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQGL  + +  +AAGG+H  A   DG ++ WG   +G+LG G    S +++P +V  L  
Sbjct: 767 VQGL--MDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGP--LSYRLLPVQVQGLTS 822

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
                ++ G +H+VA+ +DG ++++G    G+LG G    +  P++V +
Sbjct: 823 ATATAIAAGDSHTVAVRQDGTVWAWGSNFSGQLGDGTTAQSLTPVQVQV 871



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 168/380 (44%), Gaps = 48/380 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV--------------RSVVAGSRNSL 51
            ++  WG    GQLG G   +R     V  L                   R++ A   N  
Sbjct: 691  TVWTWGLNSSGQLGDGTTTQRLTPVQVHGLTDATAILTSSSQTVAMRQDRTLWAWGDNHW 750

Query: 52   AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                DG T     P QV  L +  +   A GG+H  A    G  + WG N YGQ G  P 
Sbjct: 751  GQLGDGTTTRRLTPVQVQGLMD--VTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGP- 807

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                   +  R + +  +         +AAG +H+V + ++G VW WG  +      G  
Sbjct: 808  -------LSYRLLPVQVQGLTSATATAIAAGDSHTVAVRQDGTVWAWGSNFSGQLGDGTT 860

Query: 168  KQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             Q   PV+VQ  GL  V  +A G +H  A  +DG LW WG N YGQLG G    R  P+ 
Sbjct: 861  AQSLTPVQVQVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSYRLLPVQ 920

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            VQGL  + +  +AAGG+H  A   DG ++ WG   +G+LG G    S +++P +V  L  
Sbjct: 921  VQGL--MDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGP--LSYRLLPVQVQGL-- 974

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
              +  ++ GG H  A  +DG ++++G   +G+LG G    +  P++V +       A   
Sbjct: 975  MSVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSQSLTPVQVQVQGLTGVAA--- 1031

Query: 346  VDRRWIAKLVACGGRHTLAI 365
                     +A G  HTLA+
Sbjct: 1032 ---------IAAGFSHTLAV 1042



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 160/348 (45%), Gaps = 42/348 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++  WG    GQLG G + +R     V+ L    V +V AG  +S A+            
Sbjct: 141 TVWTWGRNSSGQLGDGTSIQRFSPVQVQGLT--GVTAVAAGRNHSAALGQGGTVWTWGDN 198

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG +     P QV  L+    + A       +A+   G  +AWG N  GQ G+ 
Sbjct: 199 LVGQLGDGTSTQRLTPVQVQGLTGVIAISANDS--ETVALRQDGTVWAWGNNSSGQLGDG 256

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                 T          P +      V  +AAGG  +V L ++G +W WG     G +  
Sbjct: 257 TTTVRFT----------PVQVLGLTGVTAIAAGGGFAVALRQDGTLWAWGSN-SRGQLGN 305

Query: 170 ISV-----PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            +      P +VQGL  V  IA    H +AL++DG LWAWGNN  GQLG G T  R  P+
Sbjct: 306 GTTFGSYRPEQVQGLTGVTAIAASGIHTVALRQDGTLWAWGNNSSGQLGDGTTTVRFTPV 365

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            VQGL+G+T   IAAG  ++ A   DG V+ WG  E G+L  GD   + ++ P +V  L 
Sbjct: 366 QVQGLTGVTA--IAAGYLYTVASKQDGTVWAWGDNEWGQL--GDGTTTRRLTPVQVQGLT 421

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G  +  ++ G  ++VA  +DG ++++G     +LG G       P EV
Sbjct: 422 G--VTAIAAGYLYTVASKQDGTVWAWGDNKRSQLGEGAVSQRHTPGEV 467



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 152/331 (45%), Gaps = 60/331 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++ AWG+ +DGQLG                                    DG T     P
Sbjct: 93  TVWAWGNNDDGQLG------------------------------------DGTTTRRFSP 116

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            QV  ++    + A I  +H +A    G  + WG N  GQ G+        G  ++R   
Sbjct: 117 VQV--MTGATAIAAGI--YHTVAASQDGTVWTWGRNSSGQLGD--------GTSIQR--F 162

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ 181
            P +      V  VAAG  HS  L + G VWTWG         G   Q   PV+VQGL  
Sbjct: 163 SPVQVQGLTGVTAVAAGRNHSAALGQGGTVWTWGDNLVGQLGDGTSTQRLTPVQVQGLTG 222

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V  I+      +AL++DG +WAWGNN  GQLG G T  R  P+ V GL+G+T   IAAGG
Sbjct: 223 VIAISANDSETVALRQDGTVWAWGNNSSGQLGDGTTTVRFTPVQVLGLTGVTA--IAAGG 280

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             + AL  DG ++ WG    G+LG G    S +  P++V  L G  +  ++  G H+VAL
Sbjct: 281 GFAVALRQDGTLWAWGSNSRGQLGNGTTFGSYR--PEQVQGLTG--VTAIAASGIHTVAL 336

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +DG ++++G    G+LG G       P++V
Sbjct: 337 RQDGTLWAWGNNSSGQLGDGTTTVRFTPVQV 367



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 152/336 (45%), Gaps = 36/336 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G       +  V+        ++ AG  +++A+  DG        
Sbjct: 591 TVWAWGFNNYGQLGDGTTAGH--LTPVQVPGVTGAVAIAAGGSHTVALLQDGTVWTWGYN 648

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   + P QV  L++  ++  A    H +AV   G  + WG N  GQ G+ 
Sbjct: 649 IWGQLGDGTTTHRHSPVQVQGLAD--VIAIATNNGHTVAVRQDGTVWTWGLNSSGQLGD- 705

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPWPP---G 165
                  G   +R  + P +         +    + +V + ++  +W WG   W     G
Sbjct: 706 -------GTTTQR--LTPVQVHGLTDATAILTSSSQTVAMRQDRTLWAWGDNHWGQLGDG 756

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              +   PV+VQGL  V  +A G +H  A  +DG LW WG N YGQLG G    R  P+ 
Sbjct: 757 TTTRRLTPVQVQGLMDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGGPLSYRLLPVQ 816

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQGL+  T   IAAG  H+ A+  DG V+ WG    G+L  GD   +  + P +V +   
Sbjct: 817 VQGLTSATATAIAAGDSHTVAVRQDGTVWAWGSNFSGQL--GDGTTAQSLTPVQVQVQGL 874

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            D+  ++ GG H  A  +DG ++++G   +G+LG G
Sbjct: 875 MDVTAMAAGGYHMAAAGQDGTLWTWGLNSYGQLGGG 910



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 10/196 (5%)

Query: 140 AAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVR---VQGLEQVKLIAVGAFHNLALQ 196
           A  G H++ + ++G VW WG     G +   +   R   VQ +     IA G +H +A  
Sbjct: 79  AGNGNHTLAVRQDGTVWAWGNN-DDGQLGDGTTTRRFSPVQVMTGATAIAAGIYHTVAAS 137

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           +DG +W WG N  GQLG G +  R  P+ VQGL+G+T V  AAG  HS AL   G V+ W
Sbjct: 138 QDGTVWTWGRNSSGQLGDGTSIQRFSPVQVQGLTGVTAV--AAGRNHSAALGQGGTVWTW 195

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G    G+L  GD   + ++ P +V  L G  ++ +S   + +VAL +DG ++++G    G
Sbjct: 196 GDNLVGQL--GDGTSTQRLTPVQVQGLTG--VIAISANDSETVALRQDGTVWAWGNNSSG 251

Query: 317 RLGYGRKVTTGQPMEV 332
           +LG G       P++V
Sbjct: 252 QLGDGTTTVRFTPVQV 267


>gi|387019663|gb|AFJ51949.1| putative E3 ubiquitin-protein ligase HERC4-like [Crotalus
           adamanteus]
          Length = 1052

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 160/312 (51%), Gaps = 36/312 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK--DDTGRILRR 122
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK  +  G +  +
Sbjct: 25  PRRCSFFVNKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKRPEQVGALDAQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
           +IV             V+ G  H++ L  +G V+ WG     Q    G  +   VP  ++
Sbjct: 85  NIV------------TVSCGEAHTLALNDKGQVYAWGFAVDGQLGLSGTEEYTRVPRNIK 132

Query: 178 GLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTL 234
            L  ++++  A G FH+LAL +   +++WG N+YGQLG G + + ++ P  ++ L G+  
Sbjct: 133 SLSDIQIVQVACGYFHSLALSKGSEVFSWGQNKYGQLGLGYEYKKQASPQIIKSLLGIPF 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             IAAGG HS  LT  G V+GWGR + G+LG   ND++ + VP  +  L  + IV +SCG
Sbjct: 193 AQIAAGGAHSFVLTLSGAVFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   
Sbjct: 251 EDHTAALTKEGGVFTFGAGGYGQLGHN---STAHEIN-------PRKVFELMGN--IVTQ 298

Query: 355 VACGGRHTLAIV 366
           +ACG +HT A V
Sbjct: 299 IACGRQHTSAFV 310



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 187/397 (47%), Gaps = 60/397 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KV+ V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRRCSFFVNKKVQDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKRPEQVGALDAQNIVTVSCGEAHTLALNDKGQVYAWGFAVDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLSGTEEYTR-------VPRNI----KSLSDIQIVQVACGYFHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     + K+ + P  ++ L  +    IA G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGYEYKKQASPQIIKSLLGIPFAQIAAGGAHSFVLTLSGAVFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I+ G  H+ ALT +G V+ +G G +G+L  G N  + 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYISCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTAH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGNIVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGTTSNRKSPFPV 341

Query: 333 -----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P N   P N+ DG D  +  K +  GG  + +
Sbjct: 342 KGNWLPYNGQIPLNS-DGED-YYCVKRIFSGGDQSFS 376



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKYGQLGLGY-----------------------------------EYK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L      Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQIIKSLLGIPFAQIAAGGAHSFVLTLSGAVFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  ++ G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTAHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLG G T  R  P PV+G
Sbjct: 288 VFELMGNIVTQIACGRQHTSAFVPSTGRIYSFGLGGNGQLGMGTTSNRKSPFPVKG 343


>gi|117558047|gb|AAI27373.1| LOC100036667 protein [Xenopus (Silurana) tropicalis]
          Length = 967

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 176/356 (49%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP +        VR V  GSR+++ + DDG 
Sbjct: 1   MLCWGNTSFGQLGLGGIDEE------VVLEPRRCDFFINKNVRDVGCGSRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ ++WG   YG
Sbjct: 55  VYTCGCNDLGQLGHDKSRRKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G      ++  R+ R       +    + + QVA G  HS+ L+++  +++WGQ    
Sbjct: 115 QIG--LSTAEEYIRVPRN-----IKSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 +IK+   P  ++ L  +    IA G  H+ AL   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGLEIKKECAPRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLTDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R+ P  ++ L    ++ I  G  H+ ALT +G V+ +G G +G+L  G N  + ++ P
Sbjct: 228 TDRNVPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTNHEVNP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +KV  L G  + Q++CG  H++A     G I+SFG G +G+LG G  +    P  V
Sbjct: 286 RKVFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTINRKSPFTV 341



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 158/313 (50%), Gaps = 38/313 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N  +     G  H + V D G  Y  G N+ GQ G +  R+           
Sbjct: 25  PRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGCNDLGQLGHDKSRRK---------- 74

Query: 125 VIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRV 176
             P++       I+  V+ G  H++ L  +G V++WG     G I      + I VP  +
Sbjct: 75  --PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHA-VYGQIGLSTAEEYIRVPRNI 131

Query: 177 QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLT 233
           + L  V+++  A G  H+LAL +D  +++WG N+YGQLG G + +    P  ++ LSG+ 
Sbjct: 132 KSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECAPRHIKSLSGIP 191

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              IAAGG HS ALT  G ++GWGR + G+LG    D++ + VP  +  L  + I+ + C
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLGL--TDETDRNVPALLKSLRSQKIIHICC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I  
Sbjct: 250 GEDHTAALTKEGGVFTFGAGGYGQLGHN---STNHEVN-------PRKVFELMGS--IVT 297

Query: 354 LVACGGRHTLAIV 366
            +ACG +HTLA V
Sbjct: 298 QIACGRQHTLAFV 310



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + I +WG  + GQLG+G             LE                       K
Sbjct: 152 LSKDSDIFSWGQNQYGQLGLG-------------LE----------------------IK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            E  P  + +LS       A GG H  A+   G  + WG N++GQ G   E   +   +L
Sbjct: 177 KECAPRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLTDETDRNVPALL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +         + K+I   +  G  H+  LT+EG V+T     +GQ        +++ P +
Sbjct: 237 K------SLRSQKII--HICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEVN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H LA     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTINRKSPFTVKG 343


>gi|191961780|ref|NP_001122122.1| HECT and RLD domain containing E3 ubiquitin protein ligase 4
           [Xenopus (Silurana) tropicalis]
 gi|189441713|gb|AAI67508.1| LOC100036667 protein [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 176/356 (49%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP +        VR V  GSR+++ + DDG 
Sbjct: 1   MLCWGNTSFGQLGLGGIDEE------VVLEPRRCDFFINKNVRDVGCGSRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ ++WG   YG
Sbjct: 55  VYTCGCNDLGQLGHDKSRRKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVYG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G      ++  R+ R       +    + + QVA G  HS+ L+++  +++WGQ    
Sbjct: 115 QIGLS--TAEEYIRVPRN-----IKSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 +IK+   P  ++ L  +    IA G  H+ AL   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGLEIKKECAPRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLTDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R+ P  ++ L    ++ I  G  H+ ALT +G V+ +G G +G+L  G N  + ++ P
Sbjct: 228 TDRNVPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTNHEVNP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +KV  L G  + Q++CG  H++A     G I+SFG G +G+LG G  +    P  V
Sbjct: 286 RKVFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTINRKSPFTV 341



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 158/313 (50%), Gaps = 38/313 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N  +     G  H + V D G  Y  G N+ GQ G +  R+           
Sbjct: 25  PRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGCNDLGQLGHDKSRRK---------- 74

Query: 125 VIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRV 176
             P++       I+  V+ G  H++ L  +G V++WG     G I      + I VP  +
Sbjct: 75  --PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAVY-GQIGLSTAEEYIRVPRNI 131

Query: 177 QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLT 233
           + L  V+++  A G  H+LAL +D  +++WG N+YGQLG G + +    P  ++ LSG+ 
Sbjct: 132 KSLSDVQIVQVACGHHHSLALSKDSDIFSWGQNQYGQLGLGLEIKKECAPRHIKSLSGIP 191

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              IAAGG HS ALT  G ++GWGR + G+LG    D++ + VP  +  L  + I+ + C
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLGL--TDETDRNVPALLKSLRSQKIIHICC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I  
Sbjct: 250 GEDHTAALTKEGGVFTFGAGGYGQLGHN---STNHEVN-------PRKVFELMGS--IVT 297

Query: 354 LVACGGRHTLAIV 366
            +ACG +HTLA V
Sbjct: 298 QIACGRQHTLAFV 310



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + I +WG  + GQLG+G             LE                       K
Sbjct: 152 LSKDSDIFSWGQNQYGQLGLG-------------LE----------------------IK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            E  P  + +LS       A GG H  A+   G  + WG N++GQ G   E   +   +L
Sbjct: 177 KECAPRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLTDETDRNVPALL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +         + K+I   +  G  H+  LT+EG V+T     +GQ        +++ P +
Sbjct: 237 K------SLRSQKII--HICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEVN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H LA     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTINRKSPFTVKG 343


>gi|159039901|ref|YP_001539154.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918736|gb|ABW00164.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 556

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 172/394 (43%), Gaps = 47/394 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +  AWG   DGQLG G          V       + +V AG  +SLA+            
Sbjct: 57  TYFAWGDNSDGQLGNGTTTGSSTPVDVYLPAGTTITAVTAGGLHSLALTSTGAVLAWGRN 116

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 +G T   + P  V+  + T I   A G +H LA+   G   AWG N +GQ G  
Sbjct: 117 FSGQLGNGDTTNRSTPVDVDLPAGTTITAIAAGAFHSLALTSAGTVLAWGENLHGQLGN- 175

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G        +       + +  VAAG  HS+ +T  G V  WG         G
Sbjct: 176 -------GGTTNMSTPVGVSLPAGVTITAVAAGAFHSLAVTSTGAVLAWGDNSNGQLGNG 228

Query: 166 DIKQISVPVRV-----QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                S PV V       +  V     GA H+LAL   GA  AWGNN  GQLG GDT  R
Sbjct: 229 TTTGSSTPVDVDLPAGTTITAVAAGVAGAAHSLALTSTGAALAWGNNADGQLGNGDTTNR 288

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S P+ V   +G+T+  +AAGG HS ALT  G V  WGR   G+LG G    SS   P  V
Sbjct: 289 STPVDVDLPAGVTITAVAAGGLHSLALTAAGAVVAWGRNVSGQLGNGTTTGSST--PVDV 346

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           +L  G  I  ++ G    +ALT  G + ++GR   G+LG G  +    P++V  ++PA  
Sbjct: 347 DLPTGATINAIAAGFDFGLALTTAGAVVAWGRNVSGQLGNGDTINRSTPVDV--DLPA-- 402

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
               GV        VA GG+H++A+V   T  + 
Sbjct: 403 ----GV----TITAVAAGGQHSMALVALPTSTTT 428



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 141/323 (43%), Gaps = 29/323 (8%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + ST +++AWG    GQLG G+   R     V       + ++ AG+ +SLA+       
Sbjct: 104 LTSTGAVLAWGRNFSGQLGNGDTTNRSTPVDVDLPAGTTITAIAAGAFHSLALTSAGTVL 163

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      +G T   + P  V+  +   I   A G +H LAV   G   AWG N  G
Sbjct: 164 AWGENLHGQLGNGGTTNMSTPVGVSLPAGVTITAVAAGAFHSLAVTSTGAVLAWGDNSNG 223

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G        TG     D+ +P       +   VA    HS+ LT  G    WG     
Sbjct: 224 QLGN----GTTTGSSTPVDVDLPAGTTITAVAAGVAG-AAHSLALTSTGAALAWGNNADG 278

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               GD    S PV V     V + AV  G  H+LAL   GA+ AWG N  GQLG G T 
Sbjct: 279 QLGNGDTTNRSTPVDVDLPAGVTITAVAAGGLHSLALTAAGAVVAWGRNVSGQLGNGTTT 338

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             S P+ V   +G T+  IAAG     ALT  G V  WGR   G+LG GD    S   P 
Sbjct: 339 GSSTPVDVDLPTGATINAIAAGFDFGLALTTAGAVVAWGRNVSGQLGNGDTINRST--PV 396

Query: 279 KVNLLAGEDIVQVSCGGTHSVAL 301
            V+L AG  I  V+ GG HS+AL
Sbjct: 397 DVDLPAGVTITAVAAGGQHSMAL 419



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 98/192 (51%), Gaps = 17/192 (8%)

Query: 179 LEQVKLIAVGAFHN---LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           + Q   +++ A  N    A++     +AWG+N  GQLG G T   S P+ V   +G T+ 
Sbjct: 33  VTQAATMSLAAAENGPSAAIRASDTYFAWGDNSDGQLGNGTTTGSSTPVDVYLPAGTTIT 92

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            + AGG HS ALT  G V  WGR   G+LG G  D +++  P  V+L AG  I  ++ G 
Sbjct: 93  AVTAGGLHSLALTSTGAVLAWGRNFSGQLGNG--DTTNRSTPVDVDLPAGTTITAIAAGA 150

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HS+ALT  G + ++G   HG+LG G   TT     V +++PA      GV        V
Sbjct: 151 FHSLALTSAGTVLAWGENLHGQLGNGG--TTNMSTPVGVSLPA------GV----TITAV 198

Query: 356 ACGGRHTLAIVE 367
           A G  H+LA+  
Sbjct: 199 AAGAFHSLAVTS 210


>gi|148700108|gb|EDL32055.1| hect domain and RLD 4, isoform CRA_e [Mus musculus]
          Length = 928

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   VA G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 183/393 (46%), Gaps = 52/393 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  A G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G   +  ++  R+ R       +    + + QVA G  HS+ L++   V+ WGQ    
Sbjct: 115 QLG--LQGSEECIRVPRN-----IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D ++ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P
Sbjct: 228 NDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV---- 332
           +KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V    
Sbjct: 286 RKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNW 345

Query: 333 -PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              N   P++ G   +  +  K +  GG  + +
Sbjct: 346 FSYNGQCPQDIGS--EDYFCVKRIFSGGDQSFS 376



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P++ +    + +  V CG  H+V +  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P +V             +D + I   VACG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEQVV-----------ALDAQNIVA-VACGEAHTLAL 99


>gi|74226109|dbj|BAE25272.1| unnamed protein product [Mus musculus]
          Length = 1057

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   VA G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  A G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G   +  ++  R+ R       +    + + QVA G  HS+ L++   V+ WGQ    
Sbjct: 115 QLG--LQGSEECIRVPRN-----IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D ++ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P
Sbjct: 228 NDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 286 RKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P++ +    + +  V CG  H+V +  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P +V             +D + I   VACG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEQVV-----------ALDAQNIVA-VACGEAHTLAL 99


>gi|218781264|ref|YP_002432582.1| chromosome condensation regulator RCC1 [Desulfatibacillum
            alkenivorans AK-01]
 gi|218762648|gb|ACL05114.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1525

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 170/341 (49%), Gaps = 59/341 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +A   S+ +WG   DGQLG+G++                                 G   
Sbjct: 1048 LAPDGSVWSWGYNSDGQLGLGSS---------------------------------GTYS 1074

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            T+N P ++NA+SN   +  A GG H LAV   G  ++WG N YGQ G        T    
Sbjct: 1075 TKNRPQKINAISNVAAI--ACGGSHSLAVARDGSLWSWGYNYYGQLGLGDNYSKTT---- 1128

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
                  PQ+      V  +AAG  +S+ LTR+G VW+WG         GD +  + P +V
Sbjct: 1129 ------PQKVNAISNVAAIAAGEYYSLALTRDGSVWSWGDNSDGQLGLGDNEDRNTPQKV 1182

Query: 177  QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            + L  V  IA G  H+LAL  DG++W+WG N  GQLG  D   R+ P PV  +S +    
Sbjct: 1183 EVLSNVAAIAAGEDHSLALTRDGSVWSWGRNSRGQLGLDDNDDRNTPQPVTTISNIKA-- 1240

Query: 237  IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK-SSKMVPQKVNLLAGEDIVQVSCGG 295
            IAAG  HS A++++G  + WG    G+LG G +   +++  PQKV +++  ++V +S G 
Sbjct: 1241 IAAGNSHSFAISEEGLAWAWGYNYDGQLGIGTSGSLANENTPQKVKVIS--NVVGLSGGN 1298

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
             HS+ALT DG ++++G  D G++G     +TG   + P+ +
Sbjct: 1299 YHSLALTEDGALWAWGDNDDGQIG-----STGGDRKNPVQV 1334



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/297 (35%), Positives = 148/297 (49%), Gaps = 39/297 (13%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A GG   LA+   G  ++WG N  GQ G      DD        +  P       +   +
Sbjct: 498 AAGGGFSLALKTDGSVWSWGNNGSGQLGLGLGENDD--------VFTPTNVDALPLAASI 549

Query: 140 AAGGTHSVVLTREGHVWTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
           AAGG H++ L  +G VW+WG+           G     + P ++  +  V  IA G  H+
Sbjct: 550 AAGGGHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENRPQKINAISNVAAIACGGSHS 609

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL  DG+ W+WG N YGQLG GD   ++ P  V  LS   +V +AAG  HS ALT DG 
Sbjct: 610 LALARDGSFWSWGYNYYGQLGLGDNVSKTTPRKVNALS--NVVAMAAGDRHSLALTLDGS 667

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WG   +G+LG GDND   +  P+KVN ++  ++V ++ G  HS+ALTRDG ++S+G 
Sbjct: 668 LWSWGDNTYGQLGLGDNDH--RNTPRKVNAIS--NVVAIAAGYRHSLALTRDGSVWSWGN 723

Query: 313 GDHGRLGYGRKV--TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              G+LG G      T QP+    NI                K +A G  +++AI E
Sbjct: 724 NTRGQLGLGDNDDRNTPQPVTTISNI----------------KAIAVGNNYSIAISE 764



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 157/301 (52%), Gaps = 40/301 (13%)

Query: 42  SVVAGSRNSLAICDDGKT-------------------KTENIPSQVNALSNTKIVQAAIG 82
           S+ AG  ++LA+  DG                      TEN P ++NA+SN   +  A G
Sbjct: 548 SIAAGGGHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENRPQKINAISNVAAI--ACG 605

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
           G H LA+   G  ++WG N YGQ G      D+  +        P++      V  +AAG
Sbjct: 606 GSHSLALARDGSFWSWGYNYYGQLG----LGDNVSK------TTPRKVNALSNVVAMAAG 655

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQED 198
             HS+ LT +G +W+WG         GD    + P +V  +  V  IA G  H+LAL  D
Sbjct: 656 DRHSLALTLDGSLWSWGDNTYGQLGLGDNDHRNTPRKVNAISNVVAIAAGYRHSLALTRD 715

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G++W+WGNN  GQLG GD   R+ P PV  +S +    IA G  +S A++++G V+ WG 
Sbjct: 716 GSVWSWGNNTRGQLGLGDNDDRNTPQPVTTISNIKA--IAVGNNYSIAISEEGLVWAWGY 773

Query: 259 GEHGRLGFGDNDK-SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
              G+LG G +   + +  PQKV +++  ++V +S G +HS+ALT DG ++++G  + G+
Sbjct: 774 NCSGQLGIGTHGSLADENTPQKVIVIS--NVVGLSAGSSHSIALTEDGALWAWGNNEAGQ 831

Query: 318 L 318
           +
Sbjct: 832 I 832



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 154/308 (50%), Gaps = 40/308 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   +SN  IV  A G    LA+   G  +AWGGN YGQ G      D+  R+     
Sbjct: 110 PEQAPVVSN--IVSVAAGRLFSLALASDGSLWAWGGNYYGQLG----MGDNDNRL----- 158

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGL 179
             P +      V  +A G  H++  T+ G VW       GQ    GD      PV+V GL
Sbjct: 159 -TPSKTPGLSDVAAIAGGDYHALAATQSGEVWAMGRNDHGQLGFTGD--HADAPVQVAGL 215

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIA 238
             VK +A G F +LAL+ DG +WAWGNNE  QLGTG   +  + P P+  LS +T   IA
Sbjct: 216 SNVKSVAAGEFFSLALKNDGTVWAWGNNESAQLGTGIAGEAVATPAPIAVLSNITA--IA 273

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  H+ AL +DG V+ WG    G+LGFG  D  +   P +V+ LA  D+  ++ G  HS
Sbjct: 274 AGRRHAMALAEDGSVWAWGANGSGQLGFG--DFETPKAPGRVSSLA--DVTAIASGWFHS 329

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           +ALT DG ++++G    GRL  G   T+ Q +  P  + +  N          A   A G
Sbjct: 330 LALTSDGVLWAWGNNGDGRL--GTDATSDQSL--PAQVSSISN----------AVSFAGG 375

Query: 359 GRHTLAIV 366
            RH+LAI 
Sbjct: 376 QRHSLAIA 383



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 19/263 (7%)

Query: 65   PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
            P++V+AL      + A G  H LA+   G  ++WG N  GQ G        T        
Sbjct: 1026 PTKVDAL--PPAAKIAAGDNHALALAPDGSVWSWGYNSDGQLGLGSSGTYSTKNR----- 1078

Query: 125  VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQGLE 180
              PQ+      V  +A GG+HS+ + R+G +W+WG  +      GD    + P +V  + 
Sbjct: 1079 --PQKINAISNVAAIACGGSHSLAVARDGSLWSWGYNYYGQLGLGDNYSKTTPQKVNAIS 1136

Query: 181  QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
             V  IA G +++LAL  DG++W+WG+N  GQLG GD + R+ P  V+ LS +    IAAG
Sbjct: 1137 NVAAIAAGEYYSLALTRDGSVWSWGDNSDGQLGLGDNEDRNTPQKVEVLSNVAA--IAAG 1194

Query: 241  GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              HS ALT DG V+ WGR   G+LG  DND   +  PQ V  ++  +I  ++ G +HS A
Sbjct: 1195 EDHSLALTRDGSVWSWGRNSRGQLGLDDNDD--RNTPQPVTTIS--NIKAIAAGNSHSFA 1250

Query: 301  LTRDGHIFSFGRGDHGRLGYGRK 323
            ++ +G  +++G    G+LG G  
Sbjct: 1251 ISEEGLAWAWGYNYDGQLGIGTS 1273



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/261 (37%), Positives = 138/261 (52%), Gaps = 19/261 (7%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V+AL     + A  GG H LA+   G  ++WG N  GQ G        T        
Sbjct: 537 PTNVDALPLAASIAA--GGGHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENR----- 589

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQGLE 180
             PQ+      V  +A GG+HS+ L R+G  W+WG  +      GD    + P +V  L 
Sbjct: 590 --PQKINAISNVAAIACGGSHSLALARDGSFWSWGYNYYGQLGLGDNVSKTTPRKVNALS 647

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            V  +A G  H+LAL  DG+LW+WG+N YGQLG GD   R+ P  V  +S   +V IAAG
Sbjct: 648 NVVAMAAGDRHSLALTLDGSLWSWGDNTYGQLGLGDNDHRNTPRKVNAIS--NVVAIAAG 705

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             HS ALT DG V+ WG    G+LG GDND   +  PQ V  ++  +I  ++ G  +S+A
Sbjct: 706 YRHSLALTRDGSVWSWGNNTRGQLGLGDNDD--RNTPQPVTTIS--NIKAIAVGNNYSIA 761

Query: 301 LTRDGHIFSFGRGDHGRLGYG 321
           ++ +G ++++G    G+LG G
Sbjct: 762 ISEEGLVWAWGYNCSGQLGIG 782



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 140/307 (45%), Gaps = 35/307 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           +AS  S+ AWG    GQLG+G+N+ R        L    V ++  G  ++LA    G+  
Sbjct: 132 LASDGSLWAWGGNYYGQLGMGDNDNRLTPSKTPGLS--DVAAIAGGDYHALAATQSGEVW 189

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                            + P QV  LSN K V A  G +  LA+ + G  +AWG NE  Q
Sbjct: 190 AMGRNDHGQLGFTGDHADAPVQVAGLSNVKSVAA--GEFFSLALKNDGTVWAWGNNESAQ 247

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP- 164
            G        TG I    +  P   A    +  +AAG  H++ L  +G VW WG      
Sbjct: 248 LG--------TG-IAGEAVATPAPIAVLSNITAIAAGRRHAMALAEDGSVWAWGANGSGQ 298

Query: 165 ---GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              GD +    P RV  L  V  IA G FH+LAL  DG LWAWGNN  G+LGT  T  +S
Sbjct: 299 LGFGDFETPKAPGRVSSLADVTAIASGWFHSLALTSDGVLWAWGNNGDGRLGTDATSDQS 358

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V  +S    V  A G  HS A+  DG V+ WG   +G+LG      +S + P    
Sbjct: 359 LPAQVSSIS--NAVSFAGGQRHSLAIAADGSVWSWGGNAYGQLGVESLTPASVLTPVHT- 415

Query: 282 LLAGEDI 288
           L +GED 
Sbjct: 416 LYSGEDF 422



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 159/335 (47%), Gaps = 42/335 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++  WG  +  QLG+G++  R  +   +A     + SV AG   SLA+  DG        
Sbjct: 87  TVWVWGRNDYNQLGLGDDINR--LAPEQAPVVSNIVSVAAGRLFSLALASDGSLWAWGGN 144

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          PS+   LS+   +  A G +H LA    G  +A G N++GQ G  
Sbjct: 145 YYGQLGMGDNDNRLTPSKTPGLSDVAAI--AGGDYHALAATQSGEVWAMGRNDHGQLGFT 202

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
            +  D            P + A    V+ VAAG   S+ L  +G VW WG     Q    
Sbjct: 203 GDHAD-----------APVQVAGLSNVKSVAAGEFFSLALKNDGTVWAWGNNESAQLGTG 251

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
              + ++ P  +  L  +  IA G  H +AL EDG++WAWG N  GQLG GD +    P 
Sbjct: 252 IAGEAVATPAPIAVLSNITAIAAGRRHAMALAEDGSVWAWGANGSGQLGFGDFETPKAPG 311

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V  L+ +T   IA+G +HS ALT DG ++ WG    GRLG   +  S + +P +V+ ++
Sbjct: 312 RVSSLADVTA--IASGWFHSLALTSDGVLWAWGNNGDGRLGT--DATSDQSLPAQVSSIS 367

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             + V  + G  HS+A+  DG ++S+G   +G+LG
Sbjct: 368 --NAVSFAGGQRHSLAIAADGSVWSWGGNAYGQLG 400



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 121/240 (50%), Gaps = 33/240 (13%)

Query: 138  QVAAGGTHSVVLTREGHVWTWGQPWPPGDIK------QISVPVRVQGLEQVKLIAVGAFH 191
             VAAGG  S+ L  +G +W+WG                +  P +V  L     IA G  H
Sbjct: 985  MVAAGGNFSLALKTDGSLWSWGDNGTGQLGLGLGQSVNVFTPTKVDALPPAAKIAAGDNH 1044

Query: 192  NLALQEDGALWAWGNNEYGQLGTGDT---QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             LAL  DG++W+WG N  GQLG G +     +++P  +  +S +    IA GG HS A+ 
Sbjct: 1045 ALALAPDGSVWSWGYNSDGQLGLGSSGTYSTKNRPQKINAISNVAA--IACGGSHSLAVA 1102

Query: 249  DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
             DG ++ WG   +G+LG GDN   SK  PQKVN ++  ++  ++ G  +S+ALTRDG ++
Sbjct: 1103 RDGSLWSWGYNYYGQLGLGDN--YSKTTPQKVNAIS--NVAAIAAGEYYSLALTRDGSVW 1158

Query: 309  SFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            S+G    G+LG G      T Q +EV  N+ A                +A G  H+LA+ 
Sbjct: 1159 SWGDNSDGQLGLGDNEDRNTPQKVEVLSNVAA----------------IAAGEDHSLALT 1202



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 113/241 (46%), Gaps = 38/241 (15%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV--------PVRVQGLEQVKLIAVGA 189
            VA+   HS+ L  +G VW WG+     D  Q+ +        P +   +  +  +A G 
Sbjct: 71  MVASRLDHSLALKGDGTVWVWGR----NDYNQLGLGDDINRLAPEQAPVVSNIVSVAAGR 126

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
             +LAL  DG+LWAWG N YGQLG GD   R  P    GLS +    IA G +H+ A T 
Sbjct: 127 LFSLALASDGSLWAWGGNYYGQLGMGDNDNRLTPSKTPGLSDVAA--IAGGDYHALAATQ 184

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            GEV+  GR +HG+LGF     +       V +    ++  V+ G   S+AL  DG +++
Sbjct: 185 SGEVWAMGRNDHGQLGF-----TGDHADAPVQVAGLSNVKSVAAGEFFSLALKNDGTVWA 239

Query: 310 FGRGDHGRLGY---GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +G  +  +LG    G  V T  P+ V  NI A                +A G RH +A+ 
Sbjct: 240 WGNNESAQLGTGIAGEAVATPAPIAVLSNITA----------------IAAGRRHAMALA 283

Query: 367 E 367
           E
Sbjct: 284 E 284



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 18/204 (8%)

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGD  +I       G     ++A G   +LAL+ DG++W+WGNN  GQLG G  +     
Sbjct: 477 PGDFFKIQPGFSGCGNPN-PMVAAGGGFSLALKTDGSVWSWGNNGSGQLGLGLGENDDVF 535

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE-HGRLGFGDNDKSSKMVPQKVNL 282
            P    +      IAAGG H+ AL  DG V+ WGR              S++  PQK+N 
Sbjct: 536 TPTNVDALPLAASIAAGGGHALALASDGSVWSWGRNSVGQLGLGTGGTYSTENRPQKINA 595

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           ++  ++  ++CGG+HS+AL RDG  +S+G   +G+LG G  V+   P +V        NA
Sbjct: 596 IS--NVAAIACGGSHSLALARDGSFWSWGYNYYGQLGLGDNVSKTTPRKV--------NA 645

Query: 343 GDGVDRRWIAKLVACGGRHTLAIV 366
              V        +A G RH+LA+ 
Sbjct: 646 LSNV------VAMAAGDRHSLALT 663



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 165/419 (39%), Gaps = 91/419 (21%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
            S+ +WG+   GQLG+G+N++R     V  +    ++++  G+  S+AI ++G        
Sbjct: 717  SVWSWGNNTRGQLGLGDNDDRNTPQPVTTIS--NIKAIAVGNNYSIAISEEGLVWAWGYN 774

Query: 58   -----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           EN P +V  +SN  +V  + G  H +A+ + G  +AWG NE GQ 
Sbjct: 775  CSGQLGIGTHGSLADENTPQKVIVISN--VVGLSAGSSHSIALTEDGALWAWGNNEAGQI 832

Query: 107  GEEP--ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
              E   E  D+  ++ +   V         +   V A G    +      ++   Q    
Sbjct: 833  AAEEAIEYIDNPVQVFQSGEVFH-------LYFDVDADGADDELYDNCPSLYNPAQEDQD 885

Query: 164  ---PGDIKQISVPVRVQGLEQVKLIAVGA------------------------------- 189
               PGD+      +   G E      VG                                
Sbjct: 886  GDGPGDLCDNCPALYNPGQEDADGDGVGDECDNCPSTANAQQGNEDGDGLGDECDNCPSH 945

Query: 190  FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD--IAAGGWHSTAL 247
            F++L   EDG     G  ++     GD   +SQP    G SG    +  +AAGG  S AL
Sbjct: 946  FNDLQEDEDGD----GTGDFCDGCPGDFF-KSQP----GFSGCGNPNPMVAAGGNFSLAL 996

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
              DG ++ WG    G+LG G     +   P KV+ L      +++ G  H++AL  DG +
Sbjct: 997  KTDGSLWSWGDNGTGQLGLGLGQSVNVFTPTKVDAL--PPAAKIAAGDNHALALAPDGSV 1054

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +S+G    G+LG G   T         N P   NA   V        +ACGG H+LA+ 
Sbjct: 1055 WSWGYNSDGQLGLGSSGTYSTK-----NRPQKINAISNV------AAIACGGSHSLAVA 1102


>gi|312433980|ref|NP_084390.1| probable E3 ubiquitin-protein ligase HERC4 isoform 1 [Mus musculus]
 gi|126215720|sp|Q6PAV2.2|HERC4_MOUSE RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           4
          Length = 1057

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   VA G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  A G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G   +  ++  R+ R       +    + + QVA G  HS+ L++   V+ WGQ    
Sbjct: 115 QLG--LQGSEECIRVPRN-----IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D ++ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P
Sbjct: 228 NDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 286 RKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P++ +    + +  V CG  H+V +  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P +V             +D + I   VACG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEQVV-----------ALDAQNIVA-VACGEAHTLAL 99


>gi|354477676|ref|XP_003501045.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Cricetulus griseus]
          Length = 1049

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 162/310 (52%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +  +N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   V+ G  H++ L  +G V++WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VSCGEAHTLALNDKGQVYSWGLDSDGQLGLLGSEEYIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKSDFFANKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ Y+WG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLLGSEEYIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|148700104|gb|EDL32051.1| hect domain and RLD 4, isoform CRA_a [Mus musculus]
          Length = 546

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 158/310 (50%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   VA G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+        P +V   + +            I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGS------------IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 183/393 (46%), Gaps = 52/393 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  A G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G +    ++  R+ R       +    + + QVA G  HS+ L++   V+ WGQ    
Sbjct: 115 QLGLQGS--EECIRVPRN-----IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D ++ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P
Sbjct: 228 NDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV---- 332
           +KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V    
Sbjct: 286 RKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNW 345

Query: 333 -PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              N   P++ G   +  +  K +  GG  + +
Sbjct: 346 FSYNGQCPQDIGS--EDYFCVKRIFSGGDQSFS 376



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P++ +    + +  V CG  H+V +  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P +V             +D + I   VACG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEQVV-----------ALDAQNIVA-VACGEAHTLAL 99


>gi|73952751|ref|XP_860006.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 9
           [Canis lupus familiaris]
          Length = 1054

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 176/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL ++G  + WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKEGEFFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+ +  +R    ++K+L   K+  +  G  ++ A+  +G        
Sbjct: 210 AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                    T  E  P +V  L  + + Q A G  H  A V   GR Y++G    GQ G
Sbjct: 270 GYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLG 328


>gi|338530520|ref|YP_004663854.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
 gi|337256616|gb|AEI62776.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
          Length = 1457

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 170/352 (48%), Gaps = 44/352 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
            ++ AWG    GQLG G  E R    VV+ L    V +V  G+ +SLA+            
Sbjct: 1126 TVQAWGDNAHGQLGDGTTERRAAPVVVRGLT--GVVAVSTGAWHSLALRSDGTVWAWGAN 1183

Query: 54   ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG T +   P +V  L   K+V    GG+H LAV   G  +AWG N +GQ G+ 
Sbjct: 1184 GFGQLGDGTTLSRTTPVRVAGLQ--KVVAIGAGGYHALAVRSDGSVWAWGYNAFGQLGDG 1241

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                           ++P R      V  VA G  HS+ L  +G +  WG     G +  
Sbjct: 1242 TAESR----------LLPVRVEGLSNVTSVAGGDHHSLALLADGSLGAWGNN-AAGQLGD 1290

Query: 170  ISVPVR-----VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQPRSQ 222
             +   R     V+G++ V  +  GA H LAL+ DG +W WG+N + QLG GD  T+ R  
Sbjct: 1291 GTGTTRYSRVWVKGVDGVVEVRAGAAHTLALRGDGTVWTWGDNTHSQLGAGDDSTRTRIV 1350

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            P PV GLSG+T   I AG  HS A+   G V+ WGR  HG+LG GDN  +++  P +V  
Sbjct: 1351 PRPVPGLSGVTA--IGAGARHSFAVGPKGTVWAWGRNSHGQLGLGDN--ANRAEPLRVKE 1406

Query: 283  LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            LA  ++  VS G   S+A+ RDG + S+G   HG LG G       P +V +
Sbjct: 1407 LA--EVSVVSGGADFSLAMQRDGTVSSWGSSLHGALGLGTAGQRSSPGQVAL 1456



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 163/347 (46%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ +WG    GQLG G   ER     V+ L    +R V A   +SLA+            
Sbjct: 420 TVWSWGRNTYGQLGDGTTAERHAAVRVEGLS--GIRGVAASGHHSLAVGADGTVWAWGRN 477

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T+    P  V+ L  T +V  A GG H +A+   G  +AWG N  GQ G+ 
Sbjct: 478 AAGQLGDGSTRDRARPVAVSGL--TSVVAVATGGSHTMALRGDGTVWAWGYNALGQLGDG 535

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                        D + P R A    V  VAAG   S+ L  +G VWTWG+ +       
Sbjct: 536 TTV----------DRLTPVRVARLDSVVAVAAGTYFSMALRGDGTVWTWGEGFEGQVGDG 585

Query: 170 IS----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV+V GL  V  +A G+ H LA++ DG +WAWG+N  GQLG G    R +P+ 
Sbjct: 586 GGVQRLFPVQVAGLTNVTRVAAGSAHALAVRGDGTVWAWGDNGEGQLGDGTWSDRFRPVQ 645

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+G+T V  + G  HS AL  DG V  WG   +G+L  GD   +S++ P  V  L G
Sbjct: 646 VPGLTGITAV--SGGRSHSMALHGDGSVRAWGYNGYGQL--GDGTFTSRVRPAVVPGLTG 701

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +  S    H +AL  DG +  +G    G+LG G    + +P++V
Sbjct: 702 IQALHPSH--LHVLALHADGTLRGWGYNRFGQLGLGAAGWSSRPVQV 746



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 186/438 (42%), Gaps = 120/438 (27%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--ENI-- 64
            AWG+   GQLG G N  +     V +++  +VR++ AG+ + +A+ +DG   T  +N   
Sbjct: 973  AWGANPSGQLGDGTNHSQRVPKQVTSVK--RVRAMSAGAHHVVALGEDGAVWTWGDNTLG 1030

Query: 65   -------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE--- 108
                         P QV  L + + V A  G    +AV   G A+AWG NEYGQ G+   
Sbjct: 1031 QLGDGTSAPTWMWPRQVPELRDVEAVAA--GEQFSVAVLVGGGAHAWGSNEYGQLGDGKT 1088

Query: 109  -----------EPERKDDTGRILRR--------------------------DIVIPQRCA 131
                       E  +     R +R                           D    +R A
Sbjct: 1089 GPRLTPVQVRIEASKLRQPVRTVRAWAQHAVALMADGTVQAWGDNAHGQLGDGTTERRAA 1148

Query: 132  PKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQV 182
            P ++     V  V+ G  HS+ L  +G VW WG         G     + PVRV GL++V
Sbjct: 1149 PVVVRGLTGVVAVSTGAWHSLALRSDGTVWAWGANGFGQLGDGTTLSRTTPVRVAGLQKV 1208

Query: 183  KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--------- 233
              I  G +H LA++ DG++WAWG N +GQLG G  + R  P+ V+GLS +T         
Sbjct: 1209 VAIGAGGYHALAVRSDGSVWAWGYNAFGQLGDGTAESRLLPVRVEGLSNVTSVAGGDHHS 1268

Query: 234  ---------------------------------------LVDIAAGGWHSTALTDDGEVY 254
                                                   +V++ AG  H+ AL  DG V+
Sbjct: 1269 LALLADGSLGAWGNNAAGQLGDGTGTTRYSRVWVKGVDGVVEVRAGAAHTLALRGDGTVW 1328

Query: 255  GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
             WG   H +LG GD+   +++VP+ V  L+G  +  +  G  HS A+   G ++++GR  
Sbjct: 1329 TWGDNTHSQLGAGDDSTRTRIVPRPVPGLSG--VTAIGAGARHSFAVGPKGTVWAWGRNS 1386

Query: 315  HGRLGYGRKVTTGQPMEV 332
            HG+LG G      +P+ V
Sbjct: 1387 HGQLGLGDNANRAEPLRV 1404



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 162/348 (46%), Gaps = 42/348 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWG+   GQLG G   +R  +  V+      + +V AG+ +++A+  DG   T    
Sbjct: 220 TVRAWGANSSGQLGDGTFTQR--LAPVEVAHISGISAVTAGTYHAVALGKDGGVWTWGAN 277

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         +P++V  L   K V +       LA+ + G   AWG N  GQ G+ 
Sbjct: 278 SSGQLGDGAWSDRAVPARVPGLERVKAVASMDA--SSLALLEAGSVLAWGANGSGQLGDS 335

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
                        D   P        V  V  G  H++ L  +G +W WG     Q    
Sbjct: 336 GTD----------DRATPGEVPGLRSVAAVVGGAQHALALRGDGTLWAWGGGLAGQLGHG 385

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G  + + VP  +  L  V  +A G+FH+LA   DG +W+WG N YGQLG G T  R   +
Sbjct: 386 GSERHV-VPAPLLRLADVASMAAGSFHSLAALGDGTVWSWGRNTYGQLGDGTTAERHAAV 444

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V+GLSG+    +AA G HS A+  DG V+ WGR   G+L  GD     +  P  V+ L 
Sbjct: 445 RVEGLSGIR--GVAASGHHSLAVGADGTVWAWGRNAAGQL--GDGSTRDRARPVAVSGL- 499

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +V V+ GG+H++AL  DG ++++G    G+LG G  V    P+ V
Sbjct: 500 -TSVVAVATGGSHTMALRGDGTVWAWGYNALGQLGDGTTVDRLTPVRV 546



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/261 (37%), Positives = 134/261 (51%), Gaps = 19/261 (7%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           ++ A G  H L V   G  +AWGGN  GQ G E          L+R    P   +P+ IV
Sbjct: 52  MRIAAGSQHSLYVSPTGAVWAWGGNTSGQLGGEATP-------LQRLAPAPL-PSPRDIV 103

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
             V +G  HS+ L   G VW WG         G       P++V GL  V  +A G FH+
Sbjct: 104 -SVVSGEAHSLALDEAGTVWAWGGNSSGQLGDGTTTDRVTPMQVAGLTDVVAVAAGDFHS 162

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL+ DG +WAWG N +GQLG G T+P   P PV GL G  +V +AAG   + A+ DDG 
Sbjct: 163 LALRGDGTVWAWGTNFHGQLGRGHTEPGLTPEPVPGLEG--VVALAAGFDFTLAVMDDGT 220

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V  WG    G+L  GD   + ++ P +V  ++G  I  V+ G  H+VAL +DG ++++G 
Sbjct: 221 VRAWGANSSGQL--GDGTFTQRLAPVEVAHISG--ISAVTAGTYHAVALGKDGGVWTWGA 276

Query: 313 GDHGRLGYGRKVTTGQPMEVP 333
              G+LG G       P  VP
Sbjct: 277 NSSGQLGDGAWSDRAVPARVP 297



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 186/425 (43%), Gaps = 83/425 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           ++ T ++ AWG    GQLG G     + +       P  + SVV+G  +SLA+ +     
Sbjct: 64  VSPTGAVWAWGGNTSGQLG-GEATPLQRLAPAPLPSPRDIVSVVSGEAHSLALDEAGTVW 122

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T     P QV  L  T +V  A G +H LA+   G  +AWG N +G
Sbjct: 123 AWGGNSSGQLGDGTTTDRVTPMQVAGL--TDVVAVAAGDFHSLALRGDGTVWAWGTNFHG 180

Query: 105 QCGE-------EPE---------------------RKDDTGRILRR-------DIVIPQR 129
           Q G         PE                       D T R           D    QR
Sbjct: 181 QLGRGHTEPGLTPEPVPGLEGVVALAAGFDFTLAVMDDGTVRAWGANSSGQLGDGTFTQR 240

Query: 130 CAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
            AP  +     +  V AG  H+V L ++G VWTWG         G     +VP RV GLE
Sbjct: 241 LAPVEVAHISGISAVTAGTYHAVALGKDGGVWTWGANSSGQLGDGAWSDRAVPARVPGLE 300

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +VK +A     +LAL E G++ AWG N  GQLG   T  R+ P  V GL   ++  +  G
Sbjct: 301 RVKAVASMDASSLALLEAGSVLAWGANGSGQLGDSGTDDRATPGEVPGLR--SVAAVVGG 358

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H+ AL  DG ++ WG G  G+LG G +++   +VP  +  LA  D+  ++ G  HS+A
Sbjct: 359 AQHALALRGDGTLWAWGGGLAGQLGHGGSER--HVVPAPLLRLA--DVASMAAGSFHSLA 414

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
              DG ++S+GR  +G+LG G                A R+A   V+     + VA  G 
Sbjct: 415 ALGDGTVWSWGRNTYGQLGDGTT--------------AERHAAVRVEGLSGIRGVAASGH 460

Query: 361 HTLAI 365
           H+LA+
Sbjct: 461 HSLAV 465



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 165/356 (46%), Gaps = 39/356 (10%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI-CD--------- 55
            +++AWG    GQLG G    R    +V+ +    VRSV +G  +SLA+ CD         
Sbjct: 770  AVLAWGENASGQLGDGTTTHRAGPVLVRGVP--CVRSVASGVLHSLALACDGSVWAWGAN 827

Query: 56   ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG T +  IP++V+ L     V A       LA+   G A+AWG N +GQ G+ 
Sbjct: 828  GRGQLGDGTTASRVIPARVDGLQGAVAVAAGGD--ASLALLADGTAWAWGANAHGQLGDG 885

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                         D  +P +      +  VA G TH +    +G +W WG         G
Sbjct: 886  ST----------SDRAVPGQLKLPSNIMSVALGETHGLAAGEDGALWAWGANGSGQLGEG 935

Query: 166  DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                   PVRV+GLE V  ++ G   +LA+++DG  WAWG N  GQLG G     SQ +P
Sbjct: 936  STTPSPTPVRVKGLEGVASVSAGRAFSLAVRQDGTAWAWGANPSGQLGDGTNH--SQRVP 993

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
             Q  S   +  ++AG  H  AL +DG V+ WG    G+LG G     + M P++V  L  
Sbjct: 994  KQVTSVKRVRAMSAGAHHVVALGEDGAVWTWGDNTLGQLGDG-TSAPTWMWPRQVPEL-- 1050

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
             D+  V+ G   SVA+   G   ++G  ++G+LG G+      P++V I     R 
Sbjct: 1051 RDVEAVAAGEQFSVAVLVGGGAHAWGSNEYGQLGDGKTGPRLTPVQVRIEASKLRQ 1106



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 166/405 (40%), Gaps = 90/405 (22%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--------------SVVAG 46
            +A   S+ AWG+   GQLG G    R     V  L+                   +  A 
Sbjct: 815  LACDGSVWAWGANGRGQLGDGTTASRVIPARVDGLQGAVAVAAGGDASLALLADGTAWAW 874

Query: 47   SRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
              N+     DG T    +P Q+   SN  I+  A+G  H LA  + G  +AWG N  GQ 
Sbjct: 875  GANAHGQLGDGSTSDRAVPGQLKLPSN--IMSVALGETHGLAAGEDGALWAWGANGSGQL 932

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
            GE       T          P R      V  V+AG   S+ + ++G  W WG   P G 
Sbjct: 933  GEGSTTPSPT----------PVRVKGLEGVASVSAGRAFSLAVRQDGTAWAWGAN-PSGQ 981

Query: 167  IKQIS-----VPVRVQGLEQVKLIAVGAFHNLALQEDGALW------------------- 202
            +   +     VP +V  +++V+ ++ GA H +AL EDGA+W                   
Sbjct: 982  LGDGTNHSQRVPKQVTSVKRVRAMSAGAHHVVALGEDGAVWTWGDNTLGQLGDGTSAPTW 1041

Query: 203  --------------------------------AWGNNEYGQLGTGDTQPRSQPIPVQ-GL 229
                                            AWG+NEYGQLG G T PR  P+ V+   
Sbjct: 1042 MWPRQVPELRDVEAVAAGEQFSVAVLVGGGAHAWGSNEYGQLGDGKTGPRLTPVQVRIEA 1101

Query: 230  SGL--TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            S L   +  + A   H+ AL  DG V  WG   HG+LG G  ++  +  P  V  L G  
Sbjct: 1102 SKLRQPVRTVRAWAQHAVALMADGTVQAWGDNAHGQLGDGTTER--RAAPVVVRGLTG-- 1157

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +V VS G  HS+AL  DG ++++G    G+LG G  ++   P+ V
Sbjct: 1158 VVAVSTGAWHSLALRSDGTVWAWGANGFGQLGDGTTLSRTTPVRV 1202



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 140/310 (45%), Gaps = 35/310 (11%)

Query: 43  VVAGSRNSLAIC-----------DDGKTKTENIPSQVNAL----SNTKIVQAAIGGWHCL 87
           + AGS++SL +              G+   E  P Q  A     S   IV    G  H L
Sbjct: 54  IAAGSQHSLYVSPTGAVWAWGGNTSGQLGGEATPLQRLAPAPLPSPRDIVSVVSGEAHSL 113

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           A+D+ G  +AWGGN  GQ G+              D V P + A    V  VAAG  HS+
Sbjct: 114 ALDEAGTVWAWGGNSSGQLGDGTT----------TDRVTPMQVAGLTDVVAVAAGDFHSL 163

Query: 148 VLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
            L  +G VW WG  +      G  +    P  V GLE V  +A G    LA+ +DG + A
Sbjct: 164 ALRGDGTVWAWGTNFHGQLGRGHTEPGLTPEPVPGLEGVVALAAGFDFTLAVMDDGTVRA 223

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG N  GQLG G    R  P+ V  +SG++ V   AG +H+ AL  DG V+ WG    G+
Sbjct: 224 WGANSSGQLGDGTFTQRLAPVEVAHISGISAV--TAGTYHAVALGKDGGVWTWGANSSGQ 281

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           L  GD   S + VP +V  L  E +  V+     S+AL   G + ++G    G+LG    
Sbjct: 282 L--GDGAWSDRAVPARVPGL--ERVKAVASMDASSLALLEAGSVLAWGANGSGQLGDSGT 337

Query: 324 VTTGQPMEVP 333
                P EVP
Sbjct: 338 DDRATPGEVP 347



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 164/404 (40%), Gaps = 101/404 (25%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
            S+ AWG    GQLG G    R    VV  L    ++++     + LA+  DG  +     
Sbjct: 670  SVRAWGYNGYGQLGDGTFTSRVRPAVVPGLT--GIQALHPSHLHVLALHADGTLRGWGYN 727

Query: 62   ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         + P QV  L   ++ + A+G  H L V   G   AWG N  GQ G  
Sbjct: 728  RFGQLGLGAAGWSSRPVQVRGLG--RVDRLAVGRAHTLMVRPDGAVLAWGENASGQLG-- 783

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                         D     R  P L+     VR VA+G  HS+ L  +G VW WG     
Sbjct: 784  -------------DGTTTHRAGPVLVRGVPCVRSVASGVLHSLALACDGSVWAWGANGRG 830

Query: 161  PWPPGDIKQISVPVRVQGLE---------------------------------------- 180
                G      +P RV GL+                                        
Sbjct: 831  QLGDGTTASRVIPARVDGLQGAVAVAAGGDASLALLADGTAWAWGANAHGQLGDGSTSDR 890

Query: 181  ----QVKL------IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
                Q+KL      +A+G  H LA  EDGALWAWG N  GQLG G T P   P+ V+GL 
Sbjct: 891  AVPGQLKLPSNIMSVALGETHGLAAGEDGALWAWGANGSGQLGEGSTTPSPTPVRVKGLE 950

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  +  ++AG   S A+  DG  + WG    G+LG G N   S+ VP++V  +  + +  
Sbjct: 951  G--VASVSAGRAFSLAVRQDGTAWAWGANPSGQLGDGTNH--SQRVPKQVTSV--KRVRA 1004

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ-PMEVP 333
            +S G  H VAL  DG ++++G    G+LG G    T   P +VP
Sbjct: 1005 MSAGAHHVVALGEDGAVWTWGDNTLGQLGDGTSAPTWMWPRQVP 1048



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 139/304 (45%), Gaps = 40/304 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
            + S  ++ AWG+   GQLG G    R     V  L+  KV ++ AG  ++LA+       
Sbjct: 1171 LRSDGTVWAWGANGFGQLGDGTTLSRTTPVRVAGLQ--KVVAIGAGGYHALAVRSDGSVW 1228

Query: 54   ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       DG  ++  +P +V  LSN  +   A G  H LA+   G   AWG N  G
Sbjct: 1229 AWGYNAFGQLGDGTAESRLLPVRVEGLSN--VTSVAGGDHHSLALLADGSLGAWGNNAAG 1286

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----Q 160
            Q G      D TG      + +         V +V AG  H++ L  +G VWTWG     
Sbjct: 1287 QLG------DGTGTTRYSRVWVKGVDG----VVEVRAGAAHTLALRGDGTVWTWGDNTHS 1336

Query: 161  PWPPGD--IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                GD   +   VP  V GL  V  I  GA H+ A+   G +WAWG N +GQLG GD  
Sbjct: 1337 QLGAGDDSTRTRIVPRPVPGLSGVTAIGAGARHSFAVGPKGTVWAWGRNSHGQLGLGDNA 1396

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             R++P+ V+ L+ +++V  + G   S A+  DG V  WG   HG LG G   + S   P 
Sbjct: 1397 NRAEPLRVKELAEVSVV--SGGADFSLAMQRDGTVSSWGSSLHGALGLGTAGQRSS--PG 1452

Query: 279  KVNL 282
            +V L
Sbjct: 1453 QVAL 1456


>gi|32451488|ref|NP_080377.2| probable E3 ubiquitin-protein ligase HERC4 isoform 2 [Mus musculus]
 gi|29144941|gb|AAH43082.1| Hect domain and RLD 4 [Mus musculus]
 gi|74188723|dbj|BAE28095.1| unnamed protein product [Mus musculus]
 gi|148700106|gb|EDL32053.1| hect domain and RLD 4, isoform CRA_c [Mus musculus]
          Length = 1049

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   VA G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D Q ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  A G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G   +  ++  R+ R       +    + + QVA G  HS+ L++   V+ WGQ    
Sbjct: 115 QLG--LQGSEECIRVPRN-----IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D ++ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P
Sbjct: 228 NDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 286 RKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P++ +    + +  V CG  H+V +  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P +V             +D + I   VACG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEQVV-----------ALDAQNIVA-VACGEAHTLAL 99


>gi|344247622|gb|EGW03726.1| putative E3 ubiquitin-protein ligase HERC4 [Cricetulus griseus]
          Length = 835

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K                           
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKS-------------------------- 28

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
             +  +N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 29  --DFFANKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V++WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYSWGLDSDGQLGLLGSEEYIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|260802292|ref|XP_002596026.1| hypothetical protein BRAFLDRAFT_113678 [Branchiostoma floridae]
 gi|229281280|gb|EEN52038.1| hypothetical protein BRAFLDRAFT_113678 [Branchiostoma floridae]
          Length = 1015

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 189/386 (48%), Gaps = 38/386 (9%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY----KVRSVVAGSRNSLAICDDGKTKT- 61
           +  WG+  +G+LG+G  EE   V +    +P+     +R V  G ++++ +  +G   T 
Sbjct: 1   MFCWGAARNGELGLGGIEED--VILAPKEQPFGATKAMREVSCGRQHTVFVLAEGTVYTC 58

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                           P+ + AL    I Q + G +H L V+D+ + ++WG ++ GQ G 
Sbjct: 59  GSNDYGQLGQDKGHKRPTVITALDTQSIQQVSCGDYHNLVVNDKYQVFSWGYDDCGQLGH 118

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
             E   +     RR  ++ +  + +++  QVA GG HS+ L+ +G +++WG         
Sbjct: 119 TLEAGGNNS---RRPRMVKELSSLQIV--QVACGGKHSLALSNDGRIFSWGNNSHGQLGI 173

Query: 165 GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G  K    P  +  L  +    I  G  H+  L + GA++ +G N +GQLG GDT  R  
Sbjct: 174 GSTKNQPKPQELTSLTGIPFCQIVAGGSHSFVLSKSGAVFGFGRNTFGQLGLGDTGDRKY 233

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V+ L  L +  I+ G  H+  LT DG V  +G G +G+LG   N+  +  +P+KV  
Sbjct: 234 PTHVKSLRSLKVTHISCGEEHTAVLTLDGGVLTFGAGSYGQLGHNSNNHEA--LPRKVFE 291

Query: 283 LAGEDIVQVSCGGTHSVALTR-DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           L G ++ Q++CG  H++A     G I+SFG G +G+L  G K TT     + ++ P    
Sbjct: 292 LMGLEVTQLACGRMHTMAYVESSGRIYSFGLGGNGQL--GSKGTTNCNTPITVDGPFVPF 349

Query: 342 AGDGV--DRRWIAKLVACGGRHTLAI 365
           AGD    ++ ++ + +  GG    A+
Sbjct: 350 AGDNSLEEQCYVVQAITAGGDQAFAL 375



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 127/287 (44%), Gaps = 38/287 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++   GS + GQLG     +R    V+ AL+   ++ V  G  ++L + D  +       
Sbjct: 54  TVYTCGSNDYGQLGQDKGHKRP--TVITALDTQSIQQVSCGDYHNLVVNDKYQVFSWGYD 111

Query: 60  -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                             P  V  LS+ +IVQ A GG H LA+ + GR ++WG N +GQ 
Sbjct: 112 DCGQLGHTLEAGGNNSRRPRMVKELSSLQIVQVACGGKHSLALSNDGRIFSWGNNSHGQL 171

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW-----TWGQP 161
           G    +     + L     IP          Q+ AGG+HS VL++ G V+     T+GQ 
Sbjct: 172 GIGSTKNQPKPQELTSLTGIP--------FCQIVAGGSHSFVLSKSGAVFGFGRNTFGQ- 222

Query: 162 WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD      P  V+ L  +K+  I+ G  H   L  DG +  +G   YGQLG      
Sbjct: 223 LGLGDTGDRKYPTHVKSLRSLKVTHISCGEEHTAVLTLDGGVLTFGAGSYGQLGHNSNNH 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRGEHGRLG 265
            + P  V  L GL +  +A G  H+ A  +  G +Y +G G +G+LG
Sbjct: 283 EALPRKVFELMGLEVTQLACGRMHTMAYVESSGRIYSFGLGGNGQLG 329



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 31/187 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  +G    GQLG+G+  +R++   VK+L   KV  +  G  ++  +  DG   
Sbjct: 206 LSKSGAVFGFGRNTFGQLGLGDTGDRKYPTHVKSLRSLKVTHISCGEEHTAVLTLDGGVL 265

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P +V  L   ++ Q A G  H +A V+  GR Y++G    
Sbjct: 266 TFGAGSYGQLGHNSNNHEALPRKVFELMGLEVTQLACGRMHTMAYVESSGRIYSFGLGGN 325

Query: 104 GQCGEE-------PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           GQ G +       P   D        D  + ++C    +V+ + AGG  +  L  +    
Sbjct: 326 GQLGSKGTTNCNTPITVDGPFVPFAGDNSLEEQC---YVVQAITAGGDQAFALASK---- 378

Query: 157 TWGQPWP 163
             G P P
Sbjct: 379 LQGTPKP 385


>gi|354477678|ref|XP_003501046.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Cricetulus griseus]
          Length = 1057

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 162/310 (52%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +  +N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRKSDFFANKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   V+ G  H++ L  +G V++WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VSCGEAHTLALNDKGQVYSWGLDSDGQLGLLGSEEYIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   VA
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKSDFFANKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ Y+WG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYSWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLLGSEEYIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + QV+CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|126272576|ref|XP_001362510.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Monodelphis domestica]
          Length = 1049

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q   PG  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIKVPRNIKSLTD 136

Query: 182 VKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++  IA G +H+LAL +   +++WG N++GQLG G + + +S P  ++ L G+  + +A
Sbjct: 137 IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKSQSAPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRFVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLG-----------------------------------FELK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
           +++ P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 SQSAPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRFVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|384249755|gb|EIE23236.1| UVB-resistance 8 [Coccomyxa subellipsoidea C-169]
          Length = 434

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 173/355 (48%), Gaps = 47/355 (13%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------------ 55
           ++WG GEDGQLG G+ EER+    +  L      +V +G+  S+A+              
Sbjct: 36  LSWGRGEDGQLGHGDAEERKKPRAIFHLMQASCSAVCSGAEYSVALSQPRNEVYSWGWGD 95

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                 G      IP  + AL+   IV+ A G  H LAV D G  +++G N+ GQ G   
Sbjct: 96  FGRLGHGDCNDVFIPQPIRALAGRNIVKVACGDTHTLAVTDTGELFSFGRNQNGQLGLG- 154

Query: 111 ERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------ 162
                       D ++PQ         V  +A GG HS+  T  G V+ WG  W      
Sbjct: 155 ---------TTSDAILPQPVESLRGQEVTSIACGGEHSLAATSAGDVFAWG--WGRYGNL 203

Query: 163 ---PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
              PP D     +P +V GLE VK+  +A G  H++A  E GA++ +G ++YGQLG GD 
Sbjct: 204 GVGPPEDRH---LPSQVHGLEGVKVTSVACGWRHSIAADETGAVYTFGWSKYGQLGHGDC 260

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             +  P  V+ L    +V IA G  H++A  D G++Y WG  + G+LG G N  S+  VP
Sbjct: 261 IDQLVPKAVESLKDSRIVLIAGGWRHTSAADDSGKLYSWGWNKFGQLGIGSNTDSNAPVP 320

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             V  L    +  +SCG  H+ A+T  G +FS+GRG +G+LG+     T  P+ +
Sbjct: 321 --VQGLNTSPVKLLSCGWRHTFAVTEAGDVFSWGRGVNGQLGHNEPKDTNAPVRL 373



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 147/303 (48%), Gaps = 29/303 (9%)

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
           +A+S+ ++   + G  H LA+   G A +WG  E GQ G     +    R +    ++  
Sbjct: 9   SAVSDLRVTSVSCGSSHSLALLSNGIALSWGRGEDGQLGHGDAEERKKPRAIFH--LMQA 66

Query: 129 RCAPKLIVRQVAAGGTHSVVLTR---EGHVWTWGQ--PWPPGDIKQISVPVRVQGL--EQ 181
            C+       V +G  +SV L++   E + W WG       GD   + +P  ++ L    
Sbjct: 67  SCS------AVCSGAEYSVALSQPRNEVYSWGWGDFGRLGHGDCNDVFIPQPIRALAGRN 120

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           +  +A G  H LA+ + G L+++G N+ GQLG G T     P PV+ L G  +  IA GG
Sbjct: 121 IVKVACGDTHTLAVTDTGELFSFGRNQNGQLGLGTTSDAILPQPVESLRGQEVTSIACGG 180

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            HS A T  G+V+ WG G +G LG G  +   + +P +V+ L G  +  V+CG  HS+A 
Sbjct: 181 EHSLAATSAGDVFAWGWGRYGNLGVGPPED--RHLPSQVHGLEGVKVTSVACGWRHSIAA 238

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
              G +++FG   +G+LG+G            I+   P+      D R +  L+A G RH
Sbjct: 239 DETGAVYTFGWSKYGQLGHGDC----------IDQLVPKAVESLKDSRIV--LIAGGWRH 286

Query: 362 TLA 364
           T A
Sbjct: 287 TSA 289



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 36/302 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           + +WG G+ G+LG G+  +      ++AL    +  V  G  ++LA+ D G+        
Sbjct: 88  VYSWGWGDFGRLGHGDCNDVFIPQPIRALAGRNIVKVACGDTHTLAVTDTGELFSFGRNQ 147

Query: 59  --------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   T    +P  V +L   ++   A GG H LA    G  +AWG   YG  G  P
Sbjct: 148 NGQLGLGTTSDAILPQPVESLRGQEVTSIACGGEHSLAATSAGDVFAWGWGRYGNLGVGP 207

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP------ 164
                      R +         + V  VA G  HS+     G V+T+G  W        
Sbjct: 208 PED--------RHLPSQVHGLEGVKVTSVACGWRHSIAADETGAVYTFG--WSKYGQLGH 257

Query: 165 GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           GD     VP  V+ L+  ++ LIA G  H  A  + G L++WG N++GQLG G     + 
Sbjct: 258 GDCIDQLVPKAVESLKDSRIVLIAGGWRHTSAADDSGKLYSWGWNKFGQLGIGSNTDSNA 317

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+PVQGL+   +  ++ G  H+ A+T+ G+V+ WGRG +G+LG   N+      P ++  
Sbjct: 318 PVPVQGLNTSPVKLLSCGWRHTFAVTEAGDVFSWGRGVNGQLGH--NEPKDTNAPVRLAE 375

Query: 283 LA 284
           L+
Sbjct: 376 LS 377



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 113/256 (44%), Gaps = 38/256 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           +  T  + ++G  ++GQLG+G   +      V++L   +V S+  G  +SLA    G   
Sbjct: 134 VTDTGELFSFGRNQNGQLGLGTTSDAILPQPVESLRGQEVTSIACGGEHSLAATSAGDVF 193

Query: 60  ---------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          +  ++PSQV+ L   K+   A G  H +A D+ G  Y +G ++YG
Sbjct: 194 AWGWGRYGNLGVGPPEDRHLPSQVHGLEGVKVTSVACGWRHSIAADETGAVYTFGWSKYG 253

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV--AAGGTHSVVLTREGHVWTWGQPW 162
           Q G         G  +  D ++P+        R V  A G  H+      G +++WG  W
Sbjct: 254 QLGH--------GDCI--DQLVPKAVESLKDSRIVLIAGGWRHTSAADDSGKLYSWG--W 301

Query: 163 PP------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                   G     + PV VQGL    VKL++ G  H  A+ E G +++WG    GQLG 
Sbjct: 302 NKFGQLGIGSNTDSNAPVPVQGLNTSPVKLLSCGWRHTFAVTEAGDVFSWGRGVNGQLGH 361

Query: 215 GDTQPRSQPIPVQGLS 230
            + +  + P+ +  LS
Sbjct: 362 NEPKDTNAPVRLAELS 377



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 34/213 (15%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
           +A+T++  + AWG G  G LG+G  E+R     V  LE  KV SV  G R+S+A  + G 
Sbjct: 184 LAATSAGDVFAWGWGRYGNLGVGPPEDRHLPSQVHGLEGVKVTSVACGWRHSIAADETGA 243

Query: 59  TKT----------------ENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGN 101
             T                + +P  V +L +++IV  A GGW H  A DD G+ Y+WG N
Sbjct: 244 VYTFGWSKYGQLGHGDCIDQLVPKAVESLKDSRIVLIA-GGWRHTSAADDSGKLYSWGWN 302

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
           ++GQ G         G     +  +P +      V+ ++ G  H+  +T  G V++WG+ 
Sbjct: 303 KFGQLG--------IGSNTDSNAPVPVQGLNTSPVKLLSCGWRHTFAVTEAGDVFSWGRG 354

Query: 161 ---PWPPGDIKQISVPVRVQGLEQ--VKLIAVG 188
                   + K  + PVR+  L    +KL  +G
Sbjct: 355 VNGQLGHNEPKDTNAPVRLAELSMGSIKLEDLG 387


>gi|126272574|ref|XP_001362426.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Monodelphis domestica]
          Length = 1057

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q   PG  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIKVPRNIKSLTD 136

Query: 182 VKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++  IA G +H+LAL +   +++WG N++GQLG G + + +S P  ++ L G+  + +A
Sbjct: 137 IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKSQSAPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRFVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLG-----------------------------------FELK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
           +++ P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 SQSAPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRFVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|50418309|gb|AAH77375.1| MGC81587 protein [Xenopus laevis]
          Length = 677

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 176/351 (50%), Gaps = 35/351 (9%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDGKT---- 59
           ++ WG+   GQLG+G  +E E V   +  + +    VR V  G+R++  + DDG      
Sbjct: 1   MLCWGNASFGQLGLGGIDE-EVVIEPRRCDFFINKNVRDVGCGNRHTGFVLDDGTVYTCG 59

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     K+   P QV AL    IV  + G  H LA++D+G+ ++WG   +GQ G  
Sbjct: 60  CNDLGQLGHDKSRKKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIGVS 119

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
               +D  R+ R       +    + + QVA G  HS+ L++E ++++WGQ         
Sbjct: 120 I--AEDYIRVPRN-----IKSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGLG 172

Query: 165 GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            + ++ S P  ++ L  +    IA G  H+ AL   GA++ WG N++GQLG  D   RS 
Sbjct: 173 SEKRKESAPRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLNDETDRSD 232

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  ++ L    ++ I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P+KV  
Sbjct: 233 PALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSASHEVNPRKVFE 290

Query: 283 LAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L G  + Q++CG  H++A     G I+SFG G +G+LG G       P  V
Sbjct: 291 LMGNIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGIGSTSNKKSPSMV 341



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 155/313 (49%), Gaps = 38/313 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N  +     G  H   V D G  Y  G N+ GQ G +  RK           
Sbjct: 25  PRRCDFFINKNVRDVGCGNRHTGFVLDDGTVYTCGCNDLGQLGHDKSRKK---------- 74

Query: 125 VIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRV 176
             P++       I+  V+ G  H++ L  +G V++WG     G I        I VP  +
Sbjct: 75  --PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHA-AHGQIGVSIAEDYIRVPRNI 131

Query: 177 QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLT 233
           + L  ++++  A G  H+LAL ++  +++WG N+YGQLG G + +  S P  ++ LSG+ 
Sbjct: 132 KSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGLGSEKRKESAPRHIKSLSGIP 191

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              IAAGG HS ALT  G ++GWGR + G+LG   ND++ +  P  +  L  + I+ + C
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLGL--NDETDRSDPALLKSLRSQKIIYICC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+ ALT++G +F+FG G +G+LG+        P +V          G+      I  
Sbjct: 250 GEDHTAALTKEGGVFTFGAGGYGQLGHNSASHEVNPRKVF------ELMGN------IVT 297

Query: 354 LVACGGRHTLAIV 366
            +ACG +HTLA V
Sbjct: 298 QIACGRQHTLAFV 310



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 143/312 (45%), Gaps = 39/312 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++   G  + GQLG  +++ R+    V AL+   + +V  G  ++LA+ D G+  +    
Sbjct: 54  TVYTCGCNDLGQLG--HDKSRKKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHA 111

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          +P  + +LS+ +IVQ A G  H LA+  +   Y+WG N+YGQ G 
Sbjct: 112 AHGQIGVSIAEDYIRVPRNIKSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGL 171

Query: 109 EPE-RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
             E RK+   R ++    IP           +AAGG HS  LT  G ++ WG+       
Sbjct: 172 GSEKRKESAPRHIKSLSGIP--------FAHIAAGGGHSFALTISGAIFGWGRNKFGQLG 223

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             D    S P  ++ L   K+I +  G  H  AL ++G ++ +G   YGQLG        
Sbjct: 224 LNDETDRSDPALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSASHEV 283

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG--DNDKSSKMVPQ 278
            P  V  L G  +  IA G  H+ A     G +Y +G G +G+LG G   N KS  MV  
Sbjct: 284 NPRKVFELMGNIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGIGSTSNKKSPSMV-- 341

Query: 279 KVNLLAGEDIVQ 290
           K N L  ED V+
Sbjct: 342 KGNWLTHEDYVR 353



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +I  WG  + GQLG+ +  +R    ++K+L   K+  +  G  ++ A+  +G   T    
Sbjct: 210 AIFGWGRNKFGQLGLNDETDRSDPALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGAG 269

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E  P +V  L    + Q A G  H LA V   GR Y++G    GQ G 
Sbjct: 270 GYGQLGHNSASHEVNPRKVFELMGNIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGI 329

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL-------IVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  +  +++ + +  +    +L        V+++ +GG  S       H +T    
Sbjct: 330 GSTSNKKSPSMVKGNWLTHEDYVRRLPEANGCYCVKRIYSGGDQSF-----AHYFTIQNC 384

Query: 162 WPPGDIKQISVPVRVQGLEQ 181
            PP D ++ +   ++  L++
Sbjct: 385 LPPDDFRKCNCSRKIWTLDE 404


>gi|261405028|ref|YP_003241269.1| hypothetical protein GYMC10_1173 [Paenibacillus sp. Y412MC10]
 gi|261281491|gb|ACX63462.1| Listeria/Bacterioides repeat protein [Paenibacillus sp. Y412MC10]
          Length = 1280

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 169/341 (49%), Gaps = 39/341 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  + +WG G+ GQLG G    R    + K L    V  + +G R+S+A+  DG   
Sbjct: 48  LVSSGEVYSWGYGDRGQLGDGTWNTRTTPVMAKNLN--HVIDIHSGVRSSMALRQDGTVW 105

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T                 N P+QV  LS  K +   +  +H +A+ + G  + WG N+ G
Sbjct: 106 TWGANENGQLGIGTITNVNAPAQVPGLSGIKAISGGLA-YHGMALSENGTVWTWGKNDNG 164

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           + G     + ++          P   A    V  +AAGG +S+ L  +G VW WG     
Sbjct: 165 ELGNGTTIQQNS----------PVLVAGLSDVTAIAAGGYYSLALKSDGTVWAWGVNGSG 214

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G      VPV+V GL  V  IA G  H+LA+++DG +WAWGNN YG LG G    R
Sbjct: 215 ELGDGTTTDRHVPVQVAGLTDVMAIAAGGSHSLAIKQDGTVWAWGNNTYGTLGDGTRTHR 274

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           ++P+ V+ L    +V +A GG+HS A+   G V+ WG     +LG   N  +S ++P  V
Sbjct: 275 TRPVQVRNLQ--HIVAVAGGGYHSLAVDRAGNVWSWGDNSQQQLGL--NSNASSLIPVPV 330

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             +  E + ++S GG HSVA+ +DG ++ +G    G++G G
Sbjct: 331 PGI--EHVREISAGGFHSVAMKKDGTVWGWGYNSGGQIGDG 369



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 151/289 (52%), Gaps = 35/289 (12%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G +H  ++   G  Y+WG  + GQ G+        G    R   +  +    +I   + +
Sbjct: 41  GYYHTASLVSSGEVYSWGYGDRGQLGD--------GTWNTRTTPVMAKNLNHVI--DIHS 90

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVG-AFHNLALQ 196
           G   S+ L ++G VWTWG         G I  ++ P +V GL  +K I+ G A+H +AL 
Sbjct: 91  GVRSSMALRQDGTVWTWGANENGQLGIGTITNVNAPAQVPGLSGIKAISGGLAYHGMALS 150

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           E+G +W WG N+ G+LG G T  ++ P+ V GLS +T   IAAGG++S AL  DG V+ W
Sbjct: 151 ENGTVWTWGKNDNGELGNGTTIQQNSPVLVAGLSDVTA--IAAGGYYSLALKSDGTVWAW 208

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G    G LG  D   + + VP +V  L   D++ ++ GG+HS+A+ +DG ++++G   +G
Sbjct: 209 GVNGSGELG--DGTTTDRHVPVQVAGLT--DVMAIAAGGSHSLAIKQDGTVWAWGNNTYG 264

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            LG G +    +P++V       RN    V        VA GG H+LA+
Sbjct: 265 TLGDGTRTHRTRPVQV-------RNLQHIV-------AVAGGGYHSLAV 299



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 7/149 (4%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           I  G +H  +L   G +++WG  + GQLG G    R+ P+  + L+   ++DI +G   S
Sbjct: 38  IVAGYYHTASLVSSGEVYSWGYGDRGQLGDGTWNTRTTPVMAKNLN--HVIDIHSGVRSS 95

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG-GTHSVALTR 303
            AL  DG V+ WG  E+G+LG G    ++   P +V  L+G  I  +S G   H +AL+ 
Sbjct: 96  MALRQDGTVWTWGANENGQLGIG--TITNVNAPAQVPGLSG--IKAISGGLAYHGMALSE 151

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +G ++++G+ D+G LG G  +    P+ V
Sbjct: 152 NGTVWTWGKNDNGELGNGTTIQQNSPVLV 180



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           I AG +H+ +L   GEVY WG G+ G+LG G  N +++ ++ + +N      ++ +  G 
Sbjct: 38  IVAGYYHTASLVSSGEVYSWGYGDRGQLGDGTWNTRTTPVMAKNLN-----HVIDIHSGV 92

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             S+AL +DG ++++G  ++G+LG G       P +VP
Sbjct: 93  RSSMALRQDGTVWTWGANENGQLGIGTITNVNAPAQVP 130


>gi|403356078|gb|EJY77629.1| Hect E3 ubiquitin ligase [Oxytricha trifallax]
          Length = 1178

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 116/355 (32%), Positives = 175/355 (49%), Gaps = 70/355 (19%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P +++ L N  I Q A G  H +AVD +G  Y+WG +  GQ G     KD     L  D+
Sbjct: 14  PLEIDMLRNKGIYQVAGGDGHTVAVDIKGNVYSWGASACGQLGL-ASMKD-----LPTDV 67

Query: 125 V-IPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTW------------------ 158
              P +  P++I       V Q+A G  H+V LT++G +++W                  
Sbjct: 68  EGYPYQPTPRIIELLQSVKVIQIACGDAHTVALTQDGKLYSWGGGGCGQLGHPDTSAMPK 127

Query: 159 ---GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
              G P+ P    +  + V ++ LE VK +A G  H +A+  +G L++WG    GQLG  
Sbjct: 128 DEDGCPYQP----KPKLIVVLKNLE-VKQVACGKAHTVAVLNNGHLYSWGAGACGQLGHP 182

Query: 216 DTQPRS--------QPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           DT            QPIP  V  L    L+  + G  H+  LTD GE+Y +G G  G+LG
Sbjct: 183 DTSSFPADEDGYPYQPIPRCVTALKPFKLIHASCGDVHTMVLTDQGEIYCFGGGSCGQLG 242

Query: 266 FG-------DNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           FG       D D    M VP+K+  L G  IV +SCG +HS+AL+R+GH++++G   +G+
Sbjct: 243 FGNISQMPLDVDSCPFMPVPKKIESLQGIFIVSLSCGDSHSMALSREGHVYAWGEATYGQ 302

Query: 318 LGYGR-----KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           LG        K T  +P +     P P+     ++++ +A  ++CG  HTLA+ E
Sbjct: 303 LGLDDIRDLPKNTDNKPYQ-----PFPQKVVALMNKKIVA--ISCGETHTLALTE 350



 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 155/333 (46%), Gaps = 68/333 (20%)

Query: 51  LAICDDGKTKTENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
           LA   D  T  E  P Q     +  L + K++Q A G  H +A+   G+ Y+WGG     
Sbjct: 57  LASMKDLPTDVEGYPYQPTPRIIELLQSVKVIQIACGDAHTVALTQDGKLYSWGGGG--- 113

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIV-------RQVAAGGTHSVVLTREGHVWTW 158
                    DT  + + +   P +  PKLIV       +QVA G  H+V +   GH+++W
Sbjct: 114 --CGQLGHPDTSAMPKDEDGCPYQPKPKLIVVLKNLEVKQVACGKAHTVAVLNNGHLYSW 171

Query: 159 GQ---------------------PWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLAL 195
           G                      P+ P       +P  V  L+  KLI  + G  H + L
Sbjct: 172 GAGACGQLGHPDTSSFPADEDGYPYQP-------IPRCVTALKPFKLIHASCGDVHTMVL 224

Query: 196 QEDGALWAWGNNEYGQLGTG---------DTQPRSQPIP--VQGLSGLTLVDIAAGGWHS 244
            + G ++ +G    GQLG G         D+ P   P+P  ++ L G+ +V ++ G  HS
Sbjct: 225 TDQGEIYCFGGGSCGQLGFGNISQMPLDVDSCP-FMPVPKKIESLQGIFIVSLSCGDSHS 283

Query: 245 TALTDDGEVYGWGRGEHGRLGFGD--------NDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
            AL+ +G VY WG   +G+LG  D        ++K  +  PQKV  L  + IV +SCG T
Sbjct: 284 MALSREGHVYAWGEATYGQLGLDDIRDLPKNTDNKPYQPFPQKVVALMNKKIVAISCGET 343

Query: 297 HSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQ 328
           H++ALT  GH++SFG    G+LG Y +++  G+
Sbjct: 344 HTLALTEGGHLYSFGGNTCGQLGQYVKELEKGR 376



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 111/272 (40%), Gaps = 76/272 (27%)

Query: 7   IIAWGSGE-------------DGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI 53
           + +WG G                + G     + + + V+K LE   V+ V  G  +++A+
Sbjct: 106 LYSWGGGGCGQLGHPDTSAMPKDEDGCPYQPKPKLIVVLKNLE---VKQVACGKAHTVAV 162

Query: 54  CDDGKTKT--------------------------ENIPSQVNALSNTKIVQAAIGGWHCL 87
            ++G   +                          + IP  V AL   K++ A+ G  H +
Sbjct: 163 LNNGHLYSWGAGACGQLGHPDTSSFPADEDGYPYQPIPRCVTALKPFKLIHASCGDVHTM 222

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI---PQRCAPKLI-------VR 137
            + DQG  Y +GG   GQ G         G I +  + +   P    PK I       + 
Sbjct: 223 VLTDQGEIYCFGGGSCGQLG--------FGNISQMPLDVDSCPFMPVPKKIESLQGIFIV 274

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQI----------SVPVRVQGLEQVK 183
            ++ G +HS+ L+REGHV+ WG+         DI+ +            P +V  L   K
Sbjct: 275 SLSCGDSHSMALSREGHVYAWGEATYGQLGLDDIRDLPKNTDNKPYQPFPQKVVALMNKK 334

Query: 184 LIAV--GAFHNLALQEDGALWAWGNNEYGQLG 213
           ++A+  G  H LAL E G L+++G N  GQLG
Sbjct: 335 IVAISCGETHTLALTEGGHLYSFGGNTCGQLG 366


>gi|157127963|ref|XP_001661249.1| hect E3 ubiquitin ligase [Aedes aegypti]
 gi|108882309|gb|EAT46534.1| AAEL002306-PA [Aedes aegypti]
          Length = 4837

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 184/402 (45%), Gaps = 62/402 (15%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG  +    +     +AL   +   +  G +   A+  DGK      
Sbjct: 3937 STIFGWGHNHRGQLGGLDGSRIKMPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGY 3996

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      T + + P+ V +L +  I + A+  GG HCLA+   G  ++WG  E G+ 
Sbjct: 3997 GAGGRLGIGGTDSVSAPTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKL 4056

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG 159
            G     +D   R             PKLI       V  +A G  HS  +T +GHV TWG
Sbjct: 4057 GHG--NRDSYDR-------------PKLIEALSGIGVIDIACGSAHSACITSQGHVLTWG 4101

Query: 160  Q----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQ 211
            +        GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+
Sbjct: 4102 KGRYGRLGHGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGK 4161

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            LG G +     P+ ++ L+GL ++ +  G   S ALT  G VY WG+G++ RLG G+ D 
Sbjct: 4162 LGRGGSDGCKIPMKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDH 4221

Query: 272  SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
              +  P+KV  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G      +P  
Sbjct: 4222 VRR--PKKVAALQGKKIISIATGSLHCVACSDSGEVFTWGDNDEGQLGDGTVTAIQRPRL 4279

Query: 332  VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            V             +  + I K++ CG  HTLA+  +Q  E+
Sbjct: 4280 V-----------QSLQGKHIVKVI-CGSAHTLALSTYQLSEA 4309



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 160/334 (47%), Gaps = 64/334 (19%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT----- 59
            + A G G +G+LG+G+N        V  L  Y V+ V   +G ++++A+  DGK      
Sbjct: 2946 LYACGEGTNGRLGLGHNNNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGE 3005

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        T   P  + +L   ++   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3006 GEDGKLGHGNRLTLEKPKLIESLRTKRVRDIACGSSHSAAITSSGELYTWGLGEYGRLG- 3064

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                 D+  ++            PKL+       V QVA G     ++ LT EG V++WG
Sbjct: 3065 ---HGDNCTQL-----------KPKLVTTLQGHRVVQVACGSRDAQTLCLTEEGLVFSWG 3110

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++        SVP +V+ L  V ++ +  GA  +LAL + G +W WG  +Y
Sbjct: 3111 D----GDFGKLGRGGSEGCSVPHQVERLNSVGVMQIECGAQFSLALTKSGEVWTWGKGDY 3166

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G  Q   +P P+QGL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G+ 
Sbjct: 3167 YRLGHGTDQHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVYAWGDNDHGQQGSGNT 3226

Query: 270  DKSSKMVPQKVNLLAGED---IVQVSCGGTHSVA 300
                 +V +K NL+ G D   + +V+CG +HSVA
Sbjct: 3227 -----VVNKKPNLVLGLDGVFVNRVACGSSHSVA 3255



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 155/312 (49%), Gaps = 28/312 (8%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P+  + LS  K +  A G      V   G+ YA G    G+ G        T R +   
Sbjct: 2915 LPTYSSVLSQLKPIHIAGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVPTPRQVP-- 2972

Query: 124  IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
             ++ Q    K+ V    +GG H++ LT +G V++WG+        G+   +  P  ++ L
Sbjct: 2973 -ILNQYVVKKVAVH---SGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLTLEKPKLIESL 3028

Query: 180  --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
              ++V+ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L G  +V +
Sbjct: 3029 RTKRVRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTTLQGHRVVQV 3088

Query: 238  AAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            A G     +  LT++G V+ WG G+ G+LG G ++  S  VP +V  L    ++Q+ CG 
Sbjct: 3089 ACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGGSEGCS--VPHQVERLNSVGVMQIECGA 3146

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
              S+ALT+ G ++++G+GD+ RLG+G    T Q +  P  I   R  G  V        V
Sbjct: 3147 QFSLALTKSGEVWTWGKGDYYRLGHG----TDQHVRKPTPIQGLR--GKKVIH------V 3194

Query: 356  ACGGRHTLAIVE 367
            A G  H LA+ +
Sbjct: 3195 AVGALHCLAVTD 3206



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 146/300 (48%), Gaps = 44/300 (14%)

Query: 44  VAGSRNSLAICDDG-------KTKTENI-PSQVNALSNTKIVQAA--IGGWHCLAVDDQG 93
           VA + N++ I   G          +ENI P     L    +VQ A    G H + +    
Sbjct: 528 VACTENNIYILTTGGQVFSLHSNSSENIAPKAFEGLEGVHVVQIAAHCEGKHVMVLSSAN 587

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV----RQVA---AGGTHS 146
             ++WG               D GR+   D V  +   P +IV    +QV     G ++S
Sbjct: 588 EVWSWGAG-------------DGGRLGHGDTVSKEH--PTMIVGLHEKQVCGIYCGASYS 632

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQED 198
             +T  G ++TWG+        G+     VP +VQ L+  K++ V    G  H++ + ++
Sbjct: 633 AAITIAGELFTWGRGTYGRLGHGNSDDKLVPTQVQALKSYKVVDVALGSGDAHSMCVTDN 692

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G L+AWG+ ++G+LG G       PIPVQ  + + +  I +G   S AL+ DG +Y WG+
Sbjct: 693 GLLFAWGDGDFGKLGNGSCN--GSPIPVQIDTLVNVSRIYSGSQFSVALSCDGTLYTWGK 750

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           G  GRLG G+++ S+  VP+ V  L G+ I  V+ G  H +ALT  G ++ +GR D+ ++
Sbjct: 751 GHGGRLGHGNSEHSN--VPKLVRALEGKKIADVAVGSAHCLALTSSGELYGWGRNDYQQI 808



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 15/208 (7%)

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF--- 190
           L VRQVA    +  +LT  G V++        +  +   P   +GLE V ++ + A    
Sbjct: 523 LQVRQVACTENNIYILTTGGQVFSLH-----SNSSENIAPKAFEGLEGVHVVQIAAHCEG 577

Query: 191 -HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H + L     +W+WG  + G+LG GDT  +  P  + GL    +  I  G  +S A+T 
Sbjct: 578 KHVMVLSSANEVWSWGAGDGGRLGHGDTVSKEHPTMIVGLHEKQVCGIYCGASYSAAITI 637

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHI 307
            GE++ WGRG +GRLG G++D   K+VP +V  L    +V V+ G    HS+ +T +G +
Sbjct: 638 AGELFTWGRGTYGRLGHGNSD--DKLVPTQVQALKSYKVVDVALGSGDAHSMCVTDNGLL 695

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           F++G GD G+LG G     G P+ V I+
Sbjct: 696 FAWGDGDFGKLGNGS--CNGSPIPVQID 721



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 26/240 (10%)

Query: 136 VRQVAAG--GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAV 187
           V Q+AA   G H +VL+    VW+WG         GD      P  + GL  +QV  I  
Sbjct: 568 VVQIAAHCEGKHVMVLSSANEVWSWGAGDGGRLGHGDTVSKEHPTMIVGLHEKQVCGIYC 627

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA--AGGWHST 245
           GA ++ A+   G L+ WG   YG+LG G++  +  P  VQ L    +VD+A  +G  HS 
Sbjct: 628 GASYSAAITIAGELFTWGRGTYGRLGHGNSDDKLVPTQVQALKSYKVVDVALGSGDAHSM 687

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            +TD+G ++ WG G+ G+LG G  + S   +P +++ L   ++ ++  G   SVAL+ DG
Sbjct: 688 CVTDNGLLFAWGDGDFGKLGNGSCNGSP--IPVQIDTLV--NVSRIYSGSQFSVALSCDG 743

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++++G+G  GRLG+G    +        N+P    A +G   + IA  VA G  H LA+
Sbjct: 744 TLYTWGKGHGGRLGHGNSEHS--------NVPKLVRALEG---KKIAD-VAVGSAHCLAL 791



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG GEDG+LG GN +  +   +++AL    V  +  GS +S  I   G   
Sbjct: 4039 LSSDGEVFSWGEGEDGKLGHGNRDSYDRPKLIEALSGIGVIDIACGSAHSACITSQGHVL 4098

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   + +  A G      L + D    ++WG  +
Sbjct: 4099 TWGKGRYGRLGHGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGD 4158

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            YG+ G    R    G        IP +      L V +V  G   SV LTR G V+TWG+
Sbjct: 4159 YGKLG----RGGSDG------CKIPMKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGK 4208

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G+   +  P +V  L+  K+I++  G+ H +A  + G ++ WG+N+ GQLG 
Sbjct: 4209 GDYHRLGHGNTDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGEVFTWGDNDEGQLGD 4268

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            G      +P  VQ L G  +V +  G  H+ AL+
Sbjct: 4269 GTVTAIQRPRLVQSLQGKHIVKVICGSAHTLALS 4302



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 44/241 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG+G+ G+LG G+   +E   ++  L   +V  +  G+  S AI   G+  
Sbjct: 583 LSSANEVWSWGAGDGGRLGHGDTVSKEHPTMIVGLHEKQVCGIYCGASYSAAITIAGELF 642

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T                + +P+QV AL + K+V  A+G    H + V D G  +AWG  +
Sbjct: 643 TWGRGTYGRLGHGNSDDKLVPTQVQALKSYKVVDVALGSGDAHSMCVTDNGLLFAWGDGD 702

Query: 103 YGQ-----CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           +G+     C   P               IP +    + V ++ +G   SV L+ +G ++T
Sbjct: 703 FGKLGNGSCNGSP---------------IPVQIDTLVNVSRIYSGSQFSVALSCDGTLYT 747

Query: 158 WGQ----PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQ 211
           WG+        G+ +  +VP  V+ LE  K+  +AVG+ H LAL   G L+ WG N+Y Q
Sbjct: 748 WGKGHGGRLGHGNSEHSNVPKLVRALEGKKIADVAVGSAHCLALTSSGELYGWGRNDYQQ 807

Query: 212 L 212
           +
Sbjct: 808 I 808



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
            +  WG N+  QLG         P     LS L  + IA G      ++ DG++Y  G G 
Sbjct: 2894 VLVWGLNDKEQLGGLKGSKVKLPTYSSVLSQLKPIHIAGGSKSLFIVSQDGKLYACGEGT 2953

Query: 261  HGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            +GRLG G N+      P++V +L    +  V V  GG H++ALT DG +FS+G G+ G+L
Sbjct: 2954 NGRLGLGHNNNVP--TPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKL 3011

Query: 319  GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+G ++T    +E P  I + R            + +ACG  H+ AI
Sbjct: 3012 GHGNRLT----LEKPKLIESLRTKR--------VRDIACGSSHSAAI 3046



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 72/264 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
            + S+  +  WG GE G+LG G+N  +    +V  L+ ++V  V  GSR++  +C      
Sbjct: 3046 ITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTTLQGHRVVQVACGSRDAQTLCLTEEGL 3105

Query: 55   -------DDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                   D GK     ++  ++P QV  L++  ++Q   G    LA+   G  + WG  +
Sbjct: 3106 VFSWGDGDFGKLGRGGSEGCSVPHQVERLNSVGVMQIECGAQFSLALTKSGEVWTWGKGD 3165

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G        T + +R+   I      K+I   VA G  H + +T  G V+ W    
Sbjct: 3166 YYRLGH------GTDQHVRKPTPIQGLRGKKVI--HVAVGALHCLAVTDSGQVYAW---- 3213

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                      G+N++GQ G+G+T    +
Sbjct: 3214 ------------------------------------------GDNDHGQQGSGNTVVNKK 3231

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTA 246
            P  V GL G+ +  +A G  HS A
Sbjct: 3232 PNLVLGLDGVFVNRVACGSSHSVA 3255


>gi|315645418|ref|ZP_07898542.1| hypothetical protein PVOR_07930 [Paenibacillus vortex V453]
 gi|315278896|gb|EFU42206.1| hypothetical protein PVOR_07930 [Paenibacillus vortex V453]
          Length = 667

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 49/354 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S+  +  WG G+ GQ+G      R      + L    V  +  G R+++A+  DG   
Sbjct: 49  LVSSGDVYVWGQGDRGQIGDAAWNARNTPVQARGLN--DVMDIHTGVRSTMALRSDGTVW 106

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T  +N+P+ V+ LS  K +   +G +H +A+ + G  + WG N+ G
Sbjct: 107 TWGSNENGQLGIGTTADKNVPTPVSGLSGIKAISGGLG-YHSMALTENGTVWTWGKNDNG 165

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWG 159
           + G                    Q+ +P L+     V  +AAGG +S+ L  +G +W WG
Sbjct: 166 ELGNG---------------TTVQQNSPVLVIGLSDVTAIAAGGYYSLALKSDGTIWAWG 210

Query: 160 Q----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                    G I     PV+V GL  V  I  G  H+LA+++DG +WAWG N YG LG G
Sbjct: 211 ANGNGELGDGTIVDKHTPVQVSGLSDVIAITAGGSHSLAIKQDGTVWAWGINMYGTLGDG 270

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
               R+ P+ V+ L  +    IA GG HS AL  +G V+GWG    G+LG G N  SS+ 
Sbjct: 271 TRTNRTIPVKVRNLQHIKA--IAGGGHHSLALDQEGNVWGWGDNSRGQLGLGHN--SSRT 326

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            P++  L   E ++ ++ GG HS AL +DG ++ +G    G++G G +     P
Sbjct: 327 TPEQ--LTGIEHVLDIAGGGFHSAALKKDGRVWGWGLNSSGQIGDGTRNDRNAP 378



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 23/282 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           D      N P Q   L++   +   +     +A+   G  + WG NE GQ G        
Sbjct: 68  DAAWNARNTPVQARGLNDVMDIHTGVR--STMALRSDGTVWTWGSNENGQLG-------- 117

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAG-GTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
            G    +++  P        ++ ++ G G HS+ LT  G VWTWG+        G   Q 
Sbjct: 118 IGTTADKNVPTPVSGLSG--IKAISGGLGYHSMALTENGTVWTWGKNDNGELGNGTTVQQ 175

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           + PV V GL  V  IA G +++LAL+ DG +WAWG N  G+LG G    +  P+ V GLS
Sbjct: 176 NSPVLVIGLSDVTAIAAGGYYSLALKSDGTIWAWGANGNGELGDGTIVDKHTPVQVSGLS 235

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              ++ I AGG HS A+  DG V+ WG   +G LG  D  ++++ +P KV  L  + I  
Sbjct: 236 --DVIAITAGGSHSLAIKQDGTVWAWGINMYGTLG--DGTRTNRTIPVKVRNL--QHIKA 289

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ GG HS+AL ++G+++ +G    G+LG G   +   P ++
Sbjct: 290 IAGGGHHSLALDQEGNVWGWGDNSRGQLGLGHNSSRTTPEQL 331



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 35/289 (12%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G +H  ++   G  Y WG  + GQ G+      +T          P +      V  +  
Sbjct: 42  GYYHTASLVSSGDVYVWGQGDRGQIGDAAWNARNT----------PVQARGLNDVMDIHT 91

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVG-AFHNLALQ 196
           G   ++ L  +G VWTWG         G     +VP  V GL  +K I+ G  +H++AL 
Sbjct: 92  GVRSTMALRSDGTVWTWGSNENGQLGIGTTADKNVPTPVSGLSGIKAISGGLGYHSMALT 151

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           E+G +W WG N+ G+LG G T  ++ P+ V GLS +T   IAAGG++S AL  DG ++ W
Sbjct: 152 ENGTVWTWGKNDNGELGNGTTVQQNSPVLVIGLSDVTA--IAAGGYYSLALKSDGTIWAW 209

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G   +G LG  D     K  P +V+ L+  D++ ++ GG+HS+A+ +DG ++++G   +G
Sbjct: 210 GANGNGELG--DGTIVDKHTPVQVSGLS--DVIAITAGGSHSLAIKQDGTVWAWGINMYG 265

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            LG G +     P++V       RN           K +A GG H+LA+
Sbjct: 266 TLGDGTRTNRTIPVKV-------RNLQH-------IKAIAGGGHHSLAL 300



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 17/203 (8%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAVGA 189
           ++ AG  H+  L   G V+ WGQ    GD  QI        + PV+ +GL  V  I  G 
Sbjct: 38  KLVAGYYHTASLVSSGDVYVWGQ----GDRGQIGDAAWNARNTPVQARGLNDVMDIHTGV 93

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
              +AL+ DG +W WG+NE GQLG G T  ++ P PV GLSG+  +     G+HS ALT+
Sbjct: 94  RSTMALRSDGTVWTWGSNENGQLGIGTTADKNVPTPVSGLSGIKAIS-GGLGYHSMALTE 152

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           +G V+ WG+ ++G LG G   + +      V ++   D+  ++ GG +S+AL  DG I++
Sbjct: 153 NGTVWTWGKNDNGELGNGTTVQQNS----PVLVIGLSDVTAIAAGGYYSLALKSDGTIWA 208

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV 332
           +G   +G LG G  V    P++V
Sbjct: 209 WGANGNGELGDGTIVDKHTPVQV 231



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 116/255 (45%), Gaps = 34/255 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++  WG  ++G+LG G   ++    +V  L    V ++ AG   SLA+            
Sbjct: 155 TVWTWGKNDNGELGNGTTVQQNSPVLVIGLS--DVTAIAAGGYYSLALKSDGTIWAWGAN 212

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG    ++ P QV+ LS+   + A  GG H LA+   G  +AWG N YG  G+ 
Sbjct: 213 GNGELGDGTIVDKHTPVQVSGLSDVIAITA--GGSHSLAIKQDGTVWAWGINMYGTLGDG 270

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                      R +  IP +      ++ +A GG HS+ L +EG+VW WG         G
Sbjct: 271 T----------RTNRTIPVKVRNLQHIKAIAGGGHHSLALDQEGNVWGWGDNSRGQLGLG 320

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                + P ++ G+E V  IA G FH+ AL++DG +W WG N  GQ+G G    R+ P  
Sbjct: 321 HNSSRTTPEQLTGIEHVLDIAGGGFHSAALKKDGRVWGWGLNSSGQIGDGTRNDRNAPAL 380

Query: 226 VQGLSGLTLVDIAAG 240
            + +   T  D   G
Sbjct: 381 TKAVLDTTAPDTGRG 395


>gi|54261597|gb|AAH84600.1| LOC495281 protein, partial [Xenopus laevis]
          Length = 1031

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 159/313 (50%), Gaps = 38/313 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK--DDTGRILRR 122
           P + +   N  +     G  H + V D G  Y  G N+ GQ G +  RK  D  G +  +
Sbjct: 9   PRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGCNDLGQLGHDKSRKKPDQVGALDAQ 68

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRV 176
            IV             V+ G  H++ L  +G V++WG     G I        I VP  +
Sbjct: 69  TIV------------AVSCGEAHTLALNDKGQVFSWGHA-AHGQIGLSVAEDYIRVPRNI 115

Query: 177 QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLT 233
           + L  ++++  A G  H+LAL ++  +++WG N+YGQLG G + +  S P  ++ L+G+ 
Sbjct: 116 KSLYDIQIVQVACGHHHSLALSKESDIYSWGQNQYGQLGLGSEIKKESAPRHIKSLAGIP 175

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              IAAGG HS ALT  G ++GWGR + G+LG   ND++ +  P  +  L  + I+ + C
Sbjct: 176 FAHIAAGGGHSFALTMSGAIFGWGRNKFGQLGL--NDETDRSAPALLKSLRSQKIIHICC 233

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I  
Sbjct: 234 GEDHTAALTKEGGVFTFGAGGYGQLGHN---STNHEVN-------PRKVFELMGS--IVT 281

Query: 354 LVACGGRHTLAIV 366
            +ACG +HTLA V
Sbjct: 282 QIACGRQHTLAFV 294



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 159/315 (50%), Gaps = 31/315 (9%)

Query: 40  VRSVVAGSRNSLAICDDGKT--------------KTENIPSQVNALSNTKIVQAAIGGWH 85
           VR V  GSR+++ + DDG                K+   P QV AL    IV  + G  H
Sbjct: 20  VRDVGCGSRHTVFVLDDGTVYTCGCNDLGQLGHDKSRKKPDQVGALDAQTIVAVSCGEAH 79

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LA++D+G+ ++WG   +GQ G      +D  R+ R       +    + + QVA G  H
Sbjct: 80  TLALNDKGQVFSWGHAAHGQIGLS--VAEDYIRVPRN-----IKSLYDIQIVQVACGHHH 132

Query: 146 SVVLTREGHVWTWGQPWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQED 198
           S+ L++E  +++WGQ          +IK+ S P  ++ L  +    IA G  H+ AL   
Sbjct: 133 SLALSKESDIYSWGQNQYGQLGLGSEIKKESAPRHIKSLAGIPFAHIAAGGGHSFALTMS 192

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           GA++ WG N++GQLG  D   RS P  ++ L    ++ I  G  H+ ALT +G V+ +G 
Sbjct: 193 GAIFGWGRNKFGQLGLNDETDRSAPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGA 252

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGR 317
           G +G+L  G N  + ++ P+KV  L G  + Q++CG  H++A     G I+SFG G +G+
Sbjct: 253 GGYGQL--GHNSTNHEVNPRKVFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQ 310

Query: 318 LGYGRKVTTGQPMEV 332
           LG G       P  V
Sbjct: 311 LGTGSTSNRKSPFTV 325



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 121/292 (41%), Gaps = 51/292 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WG    GQ+G+   E+              +R                      +P 
Sbjct: 89  VFSWGHAAHGQIGLSVAEDY-------------IR----------------------VPR 113

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE-RKDDTGRILRRDIV 125
            + +L + +IVQ A G  H LA+  +   Y+WG N+YGQ G   E +K+   R ++    
Sbjct: 114 NIKSLYDIQIVQVACGHHHSLALSKESDIYSWGQNQYGQLGLGSEIKKESAPRHIKSLAG 173

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ 181
           IP           +AAGG HS  LT  G ++ WG+         D    S P  ++ L  
Sbjct: 174 IP--------FAHIAAGGGHSFALTMSGAIFGWGRNKFGQLGLNDETDRSAPALLKSLRS 225

Query: 182 VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
            K+I +  G  H  AL ++G ++ +G   YGQLG   T     P  V  L G  +  IA 
Sbjct: 226 QKIIHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEVNPRKVFELMGSIVTQIAC 285

Query: 240 GGWHSTALT-DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  H+ A     G +Y +G G +G+LG G           K N L  ED VQ
Sbjct: 286 GRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWLTHEDYVQ 337



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 66/243 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + I +WG  + GQLG+G+                                   + K
Sbjct: 136 LSKESDIYSWGQNQYGQLGLGS-----------------------------------EIK 160

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            E+ P  + +L+       A GG H  A+   G  + WG N++GQ G      D+T    
Sbjct: 161 KESAPRHIKSLAGIPFAHIAAGGGHSFALTMSGAIFGWGRNKFGQLG----LNDET---- 212

Query: 121 RRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIK 168
                   R AP L+       +  +  G  H+  LT+EG V+T     +GQ        
Sbjct: 213 -------DRSAPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNH 265

Query: 169 QISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           +++ P +V  L    V  IA G  H LA     G ++++G    GQLGTG T  R  P  
Sbjct: 266 EVN-PRKVFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFT 324

Query: 226 VQG 228
           V+G
Sbjct: 325 VKG 327



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 29/203 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+ +  +R    ++K+L   K+  +  G  ++ A+  +G        
Sbjct: 194 AIFGWGRNKFGQLGLNDETDRSAPALLKSLRSQKIIHICCGEDHTAALTKEGGVFTFGAG 253

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                    T  E  P +V  L  + + Q A G  H LA V   GR Y++G    GQ G 
Sbjct: 254 GYGQLGHNSTNHEVNPRKVFELMGSIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGT 313

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL-------IVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  +   ++ + +  +    +L        V+++ +GG  S       H +T    
Sbjct: 314 GSTSNRKSPFTVKGNWLTHEDYVQRLPEANGCYCVKRIYSGGDQSF-----AHYFTIQHC 368

Query: 162 WPPGDIKQISVPVRVQGLEQVKL 184
            PP D  + +   ++  L++ ++
Sbjct: 369 LPPDDFTKCNCSKKIWTLDEKRI 391



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 14/96 (14%)

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           D+   + P++ +    +++  V CG  H+V +  DG +++ G  D G+LG+ +  +  +P
Sbjct: 2   DEEVVLEPRRCDFFINKNVRDVGCGSRHTVFVLDDGTVYTCGCNDLGQLGHDK--SRKKP 59

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +V             +D + I   V+CG  HTLA+
Sbjct: 60  DQV-----------GALDAQTIVA-VSCGEAHTLAL 83


>gi|310824879|ref|YP_003957237.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397951|gb|ADO75410.1| Regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
          Length = 775

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 187/386 (48%), Gaps = 54/386 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWGS  +GQLG G          VK L    V +V AG ++SLA+       
Sbjct: 185 LRSDGTVWAWGSNFEGQLGDGTTNVSLVPVRVKKLT--GVVAVAAGEKHSLAVRSDGTVW 242

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T +  +P QV  LS    V   +  +H LAV   G  + WG N  G
Sbjct: 243 TWGFNGYGALGDGTTSSRKVPVQVQGLSGGVAVAGGV--YHSLAVRSDGTVWGWGANGVG 300

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+        G  +RR +++P +      V  VAAG + S+ +  +G VW WG     
Sbjct: 301 QLGD--------GTPMRR-VLVPVQAQGLSGVEAVAAGHSLSLAVRFDGTVWAWGGNSYG 351

Query: 161 PWPPGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                 I+ +S VPV+V GL     +   + H LA++ DG +WAWG N YGQLG G T  
Sbjct: 352 ALGNDTIETMSTVPVQVPGLSGGVTVVAASSHALAVRSDGTVWAWGGNHYGQLGDGTTSE 411

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R   +PVQGLSG  ++ +AA   HS A+  D  V+ WGR   G+L  GD     + VP  
Sbjct: 412 RLVAVPVQGLSG--VMAVAARQEHSLAVRSDATVWAWGRNYEGQL--GDGTTRRREVPVP 467

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L+   +V V+ G  HS+A+  DG ++++G  ++G++G G + +   P+ VP      
Sbjct: 468 VPKLS--SVVAVAAGRYHSLAVRFDGTVWAWGDNEYGQVGDGTETSRKAPVRVP------ 519

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
            N G GV        VA G  H+L +
Sbjct: 520 -NLGGGV-------AVAAGENHSLVL 537



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 169/383 (44%), Gaps = 74/383 (19%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  ++  WG+   GQLG G    R  V V +A     V +V AG   SLA+  DG     
Sbjct: 287 SDGTVWGWGANGVGQLGDGTPMRRVLVPV-QAQGLSGVEAVAAGHSLSLAVRFDGTVWAW 345

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                             +P QV  LS    V AA    H LAV   G  +AWGGN YGQ
Sbjct: 346 GGNSYGALGNDTIETMSTVPVQVPGLSGGVTVVAASS--HALAVRSDGTVWAWGGNHYGQ 403

Query: 106 CGEEPE----------------------------RKDDT--------------GRILRRD 123
            G+                               R D T              G   RR+
Sbjct: 404 LGDGTTSERLVAVPVQGLSGVMAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTRRRE 463

Query: 124 IVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQIS--VPVRVQG 178
           + +P    PKL  V  VAAG  HS+ +  +G VW WG  +    GD  + S   PVRV  
Sbjct: 464 VPVP---VPKLSSVVAVAAGRYHSLAVRFDGTVWAWGDNEYGQVGDGTETSRKAPVRVPN 520

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           L     +A G  H+L L+ DG +WAWG N YGQLG G T     P+ VQGLSG   V +A
Sbjct: 521 LGGGVAVAAGENHSLVLRSDGTVWAWGGNHYGQLGNGITSDSPVPVQVQGLSGG--VAVA 578

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG ++S A+  DG V+ WG    G+L  GD   S   VP +V +      V V+ G +H+
Sbjct: 579 AGQYYSLAVRSDGTVWAWGLNFEGQL--GDGTASDSPVPVRVQVPGLSGGVAVAAGTSHA 636

Query: 299 VALTRDGHIFSFGRGDHGRLGYG 321
           + +  DG ++++G    G++G G
Sbjct: 637 LVVRSDGTVWAWGSNYDGQVGEG 659



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 165/382 (43%), Gaps = 73/382 (19%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------- 53
           S  ++ AWG    GQLG G   ER     V+ L    V +V A   +SLA+         
Sbjct: 389 SDGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLS--GVMAVAARQEHSLAVRSDATVWAW 446

Query: 54  -------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG T+   +P  V  LS+  +V  A G +H LAV   G  +AWG NEYGQ 
Sbjct: 447 GRNYEGQLGDGTTRRREVPVPVPKLSS--VVAVAAGRYHSLAVRFDGTVWAWGDNEYGQV 504

Query: 107 GEEPE----------------------------RKDDT------------GRILRRDIVI 126
           G+  E                            R D T            G  +  D  +
Sbjct: 505 GDGTETSRKAPVRVPNLGGGVAVAAGENHSLVLRSDGTVWAWGGNHYGQLGNGITSDSPV 564

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQ--GLE 180
           P +         VAAG  +S+ +  +G VW WG  +      G      VPVRVQ  GL 
Sbjct: 565 PVQVQGLSGGVAVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDGTASDSPVPVRVQVPGLS 624

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAA 239
               +A G  H L ++ DG +WAWG+N  GQ+G G  + R   P+ VQGLS    + +AA
Sbjct: 625 GGVAVAAGTSHALVVRSDGTVWAWGSNYDGQVGEGAPRRRVLMPVQVQGLS--EGMAVAA 682

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  HS A+  DG V+ WG    G LG G  D+  + VP +   L G     V+ G +HS+
Sbjct: 683 GYNHSLAVRSDGSVWAWGGNTAGVLGDGTTDR--RTVPVQAQGLTGAR--AVAAGESHSL 738

Query: 300 ALTRDGHIFSFGRGDHGRLGYG 321
            L  DG  ++ G    G++G G
Sbjct: 739 VLRSDGTGWAMGSNASGQIGDG 760



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 134/272 (49%), Gaps = 20/272 (7%)

Query: 54  CDDGKTKTENIPSQVNALSNTKI-VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
           C       E  PS+ +AL   +   + A G  H  AV   G  +A G N +GQ G+    
Sbjct: 50  CGQPPVDWEEQPSRASALGGARARARIATGANHSWAVRPDGTVWAVGENVFGQLGDGTTS 109

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---PPGDIKQ 169
           +       RR   +P +      V  VA G  HS+ L  +G VW  G+       G    
Sbjct: 110 E-------RR---VPVQVQGLSGVVAVAVGAYHSLALRSDGTVWAVGRAACQGGDGTASD 159

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            +VP  V GL     +A G  H+LAL+ DG +WAWG+N  GQLG G T     P+ V+ L
Sbjct: 160 CTVPAPVPGLSGGVAVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTNVSLVPVRVKKL 219

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G  +V +AAG  HS A+  DG V+ WG   +G L  GD   SS+ VP +V  L+G   V
Sbjct: 220 TG--VVAVAAGEKHSLAVRSDGTVWTWGFNGYGAL--GDGTTSSRKVPVQVQGLSGG--V 273

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            V+ G  HS+A+  DG ++ +G    G+LG G
Sbjct: 274 AVAGGVYHSLAVRSDGTVWGWGANGVGQLGDG 305



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 140/302 (46%), Gaps = 43/302 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG  E GQ+G G    R+    V+        +V AG  +SL +  DG        
Sbjct: 492 TVWAWGDNEYGQVGDGTETSRK--APVRVPNLGGGVAVAAGENHSLVLRSDGTVWAWGGN 549

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T    +P QV  LS    V  A G ++ LAV   G  +AWG N  GQ G+ 
Sbjct: 550 HYGQLGNGITSDSPVPVQVQGLSGG--VAVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDG 607

Query: 110 PERKDDTGRILRRDIVIPQRC-APKLIV-RQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
                        D  +P R   P L     VAAG +H++V+  +G VW WG  +  G +
Sbjct: 608 TAS----------DSPVPVRVQVPGLSGGVAVAAGTSHALVVRSDGTVWAWGSNYD-GQV 656

Query: 168 ------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                 +++ +PV+VQGL +   +A G  H+LA++ DG++WAWG N  G LG G T  R+
Sbjct: 657 GEGAPRRRVLMPVQVQGLSEGMAVAAGYNHSLAVRSDGSVWAWGGNTAGVLGDGTTDRRT 716

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+  QGL+G   V  AAG  HS  L  DG   GW  G +     GD   + ++     +
Sbjct: 717 VPVQAQGLTGARAV--AAGESHSLVLRSDGT--GWAMGSNASGQIGDGGPTQQVSTPTRS 772

Query: 282 LL 283
           LL
Sbjct: 773 LL 774



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 163 PPGDIK-QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           PP D + Q S    + G      IA GA H+ A++ DG +WA G N +GQLG G T  R 
Sbjct: 53  PPVDWEEQPSRASALGGARARARIATGANHSWAVRPDGTVWAVGENVFGQLGDGTTSERR 112

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ VQGLSG+  V +A G +HS AL  DG V+  GR        GD   S   VP  V 
Sbjct: 113 VPVQVQGLSGV--VAVAVGAYHSLALRSDGTVWAVGRAA---CQGGDGTASDCTVPAPVP 167

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            L+G   V V+ GG HS+AL  DG ++++G    G+LG G    +  P+ V
Sbjct: 168 GLSGG--VAVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTNVSLVPVRV 216


>gi|115374127|ref|ZP_01461415.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368903|gb|EAU67850.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 479

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ A GS   GQLG G    R     V  L   +  +V AG  ++LA+C DG        
Sbjct: 140 TVWACGSNSAGQLGNGTTAARSAPRPVPGLS--RAVAVAAGGSHALALCADGTVWAWGNN 197

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P QV  L    +V  A G  H LA+   G  +AWG N+YGQ G  
Sbjct: 198 GYGQLGNGSTAHRATPVQVPGLQG--VVAVAGGYMHSLALCADGTVWAWGFNDYGQLGN- 254

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  G  +     +P    P L  V  VAAGG HS+ L  +G VW WG         
Sbjct: 255 -------GTTVHSPTPVP---VPGLSQVVSVAAGGFHSLALCADGTVWAWGNNGFGQLGE 304

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               Q + P RV+GL +V  +A G +H+LA++  G+LW+WGNN  GQLG G     ++P 
Sbjct: 305 AVSTQRTKPGRVEGLREVVAVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSARPA 364

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           PVQGL  +T   +AAGG HS A+  DG V+ WGR E G+L  G      +  P +V  L 
Sbjct: 365 PVQGLGAVT--SVAAGGMHSVAVQADGTVWAWGRNEEGQL--GHERAPERATPVRVPGLQ 420

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           GE  V V+ G  HS+++   G ++++G  D G+LG
Sbjct: 421 GE--VAVAAGFYHSLSVQAGGSLWAWGLNDFGQLG 453



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 154/326 (47%), Gaps = 46/326 (14%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTK 75
            +A +   VR+V  G + SLA+  DG                 T   + P  V  LS  +
Sbjct: 114 AQAADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLS--R 171

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
            V  A GG H LA+   G  +AWG N YGQ G        T          P +      
Sbjct: 172 AVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGSTAHRAT----------PVQVPGLQG 221

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRVQGLEQVKLIAV 187
           V  VA G  HS+ L  +G VW WG      D  Q+          PV V GL QV  +A 
Sbjct: 222 VVAVAGGYMHSLALCADGTVWAWGF----NDYGQLGNGTTVHSPTPVPVPGLSQVVSVAA 277

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G FH+LAL  DG +WAWGNN +GQLG   +  R++P  V+GL    +V +A G +HS A+
Sbjct: 278 GGFHSLALCADGTVWAWGNNGFGQLGEAVSTQRTKPGRVEGLR--EVVAVAGGFYHSLAV 335

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
              G ++ WG    G+LG G    S++  P  V  L    +  V+ GG HSVA+  DG +
Sbjct: 336 RAGGSLWSWGNNYSGQLGNGSFSSSAR--PAPVQGLG--AVTSVAAGGMHSVAVQADGTV 391

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +++GR + G+LG+ R      P+ VP
Sbjct: 392 WAWGRNEEGQLGHERAPERATPVRVP 417



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 107/212 (50%), Gaps = 10/212 (4%)

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
             P + A +  VR VA G  +S+ L  +G VW  G         G     S P  V GL 
Sbjct: 111 ATPAQAADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLS 170

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +   +A G  H LAL  DG +WAWGNN YGQLG G T  R+ P+ V GL G  +V +A G
Sbjct: 171 RAVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGSTAHRATPVQVPGLQG--VVAVAGG 228

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             HS AL  DG V+ WG  ++G+LG G    S    P  V +     +V V+ GG HS+A
Sbjct: 229 YMHSLALCADGTVWAWGFNDYGQLGNGTTVHS----PTPVPVPGLSQVVSVAAGGFHSLA 284

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L  DG ++++G    G+LG        +P  V
Sbjct: 285 LCADGTVWAWGNNGFGQLGEAVSTQRTKPGRV 316



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 126/282 (44%), Gaps = 64/282 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG+   GQLG G+   R     V  L+   V +V  G  +SLA+C DG        
Sbjct: 190 TVWAWGNNGYGQLGNGSTAHRATPVQVPGLQ--GVVAVAGGYMHSLALCADGTVWAWGFN 247

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE-P 110
                    T + P+ V     +++V  A GG+H LA+   G  +AWG N +GQ GE   
Sbjct: 248 DYGQLGNGTTVHSPTPVPVPGLSQVVSVAAGGFHSLALCADGTVWAWGNNGFGQLGEAVS 307

Query: 111 ERKDDTGRI--LRRDIVIPQRCAPKLIVR------------------------------- 137
            ++   GR+  LR  + +       L VR                               
Sbjct: 308 TQRTKPGRVEGLREVVAVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSARPAPVQ 367

Query: 138 ------QVAAGGTHSVVLTREGHVWTWGQPWPPGDI-----KQISVPVRVQGLEQVKLIA 186
                  VAAGG HSV +  +G VW WG+    G +      + + PVRV GL+    +A
Sbjct: 368 GLGAVTSVAAGGMHSVAVQADGTVWAWGRN-EEGQLGHERAPERATPVRVPGLQGEVAVA 426

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            G +H+L++Q  G+LWAWG N++GQL  GD++    P+P  G
Sbjct: 427 AGFYHSLSVQAGGSLWAWGLNDFGQL--GDSEAPLMPVPAPG 466



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 110/253 (43%), Gaps = 70/253 (27%)

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ-------------------------- 196
           P G   + + PV+  GL  +  +A    H +AL+                          
Sbjct: 53  PKGAASRRASPVQALGLGGMAALAACCVHGMALRASGGGWTLRGLGEGAGGGEASKHRAT 112

Query: 197 ------------------------EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
                                    DG +WA G+N  GQLG G T  RS P PV GLS  
Sbjct: 113 PAQAADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLS-- 170

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
             V +AAGG H+ AL  DG V+ WG   +G+LG G    + +  P +V  L G  +V V+
Sbjct: 171 RAVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGST--AHRATPVQVPGLQG--VVAVA 226

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  HS+AL  DG ++++G  D+G+LG G  V +  P+ VP           G+ +    
Sbjct: 227 GGYMHSLALCADGTVWAWGFNDYGQLGNGTTVHSPTPVPVP-----------GLSQ---V 272

Query: 353 KLVACGGRHTLAI 365
             VA GG H+LA+
Sbjct: 273 VSVAAGGFHSLAL 285


>gi|310825568|ref|YP_003957926.1| bnr repeat domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398640|gb|ADO76099.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 482

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ A GS   GQLG G    R     V  L   +  +V AG  ++LA+C DG        
Sbjct: 143 TVWACGSNSAGQLGNGTTAARSAPRPVPGLS--RAVAVAAGGSHALALCADGTVWAWGNN 200

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P QV  L    +V  A G  H LA+   G  +AWG N+YGQ G  
Sbjct: 201 GYGQLGNGSTAHRATPVQVPGLQG--VVAVAGGYMHSLALCADGTVWAWGFNDYGQLGN- 257

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  G  +     +P    P L  V  VAAGG HS+ L  +G VW WG         
Sbjct: 258 -------GTTVHSPTPVP---VPGLSQVVSVAAGGFHSLALCADGTVWAWGNNGFGQLGE 307

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               Q + P RV+GL +V  +A G +H+LA++  G+LW+WGNN  GQLG G     ++P 
Sbjct: 308 AVSTQRTKPGRVEGLREVVAVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSARPA 367

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           PVQGL  +T   +AAGG HS A+  DG V+ WGR E G+L  G      +  P +V  L 
Sbjct: 368 PVQGLGAVT--SVAAGGMHSVAVQADGTVWAWGRNEEGQL--GHERAPERATPVRVPGLQ 423

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           GE  V V+ G  HS+++   G ++++G  D G+LG
Sbjct: 424 GE--VAVAAGFYHSLSVQAGGSLWAWGLNDFGQLG 456



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 154/326 (47%), Gaps = 46/326 (14%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTK 75
            +A +   VR+V  G + SLA+  DG                 T   + P  V  LS  +
Sbjct: 117 AQAADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLS--R 174

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
            V  A GG H LA+   G  +AWG N YGQ G        T          P +      
Sbjct: 175 AVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGSTAHRAT----------PVQVPGLQG 224

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRVQGLEQVKLIAV 187
           V  VA G  HS+ L  +G VW WG      D  Q+          PV V GL QV  +A 
Sbjct: 225 VVAVAGGYMHSLALCADGTVWAWGF----NDYGQLGNGTTVHSPTPVPVPGLSQVVSVAA 280

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G FH+LAL  DG +WAWGNN +GQLG   +  R++P  V+GL    +V +A G +HS A+
Sbjct: 281 GGFHSLALCADGTVWAWGNNGFGQLGEAVSTQRTKPGRVEGLR--EVVAVAGGFYHSLAV 338

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
              G ++ WG    G+LG G    S++  P  V  L    +  V+ GG HSVA+  DG +
Sbjct: 339 RAGGSLWSWGNNYSGQLGNGSFSSSAR--PAPVQGLG--AVTSVAAGGMHSVAVQADGTV 394

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +++GR + G+LG+ R      P+ VP
Sbjct: 395 WAWGRNEEGQLGHERAPERATPVRVP 420



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 107/212 (50%), Gaps = 10/212 (4%)

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
             P + A +  VR VA G  +S+ L  +G VW  G         G     S P  V GL 
Sbjct: 114 ATPAQAADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLS 173

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +   +A G  H LAL  DG +WAWGNN YGQLG G T  R+ P+ V GL G  +V +A G
Sbjct: 174 RAVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGSTAHRATPVQVPGLQG--VVAVAGG 231

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             HS AL  DG V+ WG  ++G+LG G    S    P  V +     +V V+ GG HS+A
Sbjct: 232 YMHSLALCADGTVWAWGFNDYGQLGNGTTVHS----PTPVPVPGLSQVVSVAAGGFHSLA 287

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L  DG ++++G    G+LG        +P  V
Sbjct: 288 LCADGTVWAWGNNGFGQLGEAVSTQRTKPGRV 319



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 126/282 (44%), Gaps = 64/282 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG+   GQLG G+   R     V  L+   V +V  G  +SLA+C DG        
Sbjct: 193 TVWAWGNNGYGQLGNGSTAHRATPVQVPGLQ--GVVAVAGGYMHSLALCADGTVWAWGFN 250

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE-P 110
                    T + P+ V     +++V  A GG+H LA+   G  +AWG N +GQ GE   
Sbjct: 251 DYGQLGNGTTVHSPTPVPVPGLSQVVSVAAGGFHSLALCADGTVWAWGNNGFGQLGEAVS 310

Query: 111 ERKDDTGRI--LRRDIVIPQRCAPKLIVR------------------------------- 137
            ++   GR+  LR  + +       L VR                               
Sbjct: 311 TQRTKPGRVEGLREVVAVAGGFYHSLAVRAGGSLWSWGNNYSGQLGNGSFSSSARPAPVQ 370

Query: 138 ------QVAAGGTHSVVLTREGHVWTWGQPWPPGDI-----KQISVPVRVQGLEQVKLIA 186
                  VAAGG HSV +  +G VW WG+    G +      + + PVRV GL+    +A
Sbjct: 371 GLGAVTSVAAGGMHSVAVQADGTVWAWGRN-EEGQLGHERAPERATPVRVPGLQGEVAVA 429

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            G +H+L++Q  G+LWAWG N++GQL  GD++    P+P  G
Sbjct: 430 AGFYHSLSVQAGGSLWAWGLNDFGQL--GDSEAPLMPVPAPG 469



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 110/253 (43%), Gaps = 70/253 (27%)

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ-------------------------- 196
           P G   + + PV+  GL  +  +A    H +AL+                          
Sbjct: 56  PKGAASRRASPVQALGLGGMAALAACCVHGMALRASGGGWTLRGLGEGAGGGEASKHRAT 115

Query: 197 ------------------------EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
                                    DG +WA G+N  GQLG G T  RS P PV GLS  
Sbjct: 116 PAQAADQRGVRAVAGGYQYSLALHADGTVWACGSNSAGQLGNGTTAARSAPRPVPGLS-- 173

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
             V +AAGG H+ AL  DG V+ WG   +G+LG G    + +  P +V  L G  +V V+
Sbjct: 174 RAVAVAAGGSHALALCADGTVWAWGNNGYGQLGNGST--AHRATPVQVPGLQG--VVAVA 229

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  HS+AL  DG ++++G  D+G+LG G  V +  P+ VP           G+ +    
Sbjct: 230 GGYMHSLALCADGTVWAWGFNDYGQLGNGTTVHSPTPVPVP-----------GLSQ---V 275

Query: 353 KLVACGGRHTLAI 365
             VA GG H+LA+
Sbjct: 276 VSVAAGGFHSLAL 288


>gi|310819121|ref|YP_003951479.1| regulator of chromosome condensation-like protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392193|gb|ADO69652.1| regulator of chromosome condensation-like protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 732

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 168/348 (48%), Gaps = 42/348 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ A GS   GQLG G   ER     V  L    +  V AGS +SLAI            
Sbjct: 52  TVWAAGSNTSGQLGDGTTSERRVPAQVVGLSDAVL--VAAGSSHSLAIRSDGTAWAWGHN 109

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P QV  LS  + V A  G  H L V   G  +AWG N  GQ G+ 
Sbjct: 110 GSGELGDGTTFRRTRPVQVTGLSEAEAVAAGDG--HSLVVRSDGTVWAWGWNSDGQLGDG 167

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
             R+            +P + A      +VAAG  HS+ +  +G VW WG+        G
Sbjct: 168 TTRERH----------VPVQVAGLSGGVKVAAGDGHSLAVCLDGTVWAWGRNDSGQLGDG 217

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q S PV+V GL  V  +A G+ H+LA++ DG +WAWG N  GQLG G T  R  P+ 
Sbjct: 218 TTVQRSAPVQVAGLSGVVAVAAGSSHSLAVRSDGTVWAWGRNSDGQLGDGTTSARLTPVQ 277

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP-QKVNLLA 284
           V GLSG   V +AAG +HS A+  DG V+ WG+   G+L  GD   ++ + P Q + L  
Sbjct: 278 VTGLSG--GVAVAAGMFHSLAVRSDGTVWAWGQNTRGQL--GDGSMTASLTPVQAIGLSE 333

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           GE    V+ G THS+    DG ++++G    G+ G G   T+  P++V
Sbjct: 334 GE---AVAAGETHSLVARSDGTVWAWGNNIEGQRGDGSAKTSTAPVQV 378



 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 155/336 (46%), Gaps = 40/336 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           ++ AWG    GQLG G   +R     V  L      +V AG  +SL +C           
Sbjct: 402 TVWAWGQNLFGQLGDGTRMQRTAPVQVTGLSGGV--AVAAGDDHSLGLCLDGTVWAWGQN 459

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P QV  LS   +V  A G  H LAV   G  +AWG N  GQ G+ 
Sbjct: 460 TSGQLGDGTTAQRPAPVQVTELSG--VVAVAAGTSHSLAVSSDGTVWAWGSNASGQLGDG 517

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
             R   T          P + A    V  VAAG  HS+ +  +G VW WG         G
Sbjct: 518 TTRARLT----------PVQVAGLSGVVAVAAGYFHSLAVRSDGTVWAWGNNSFFQLGDG 567

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q   PVRV GL      A G FH+L L+ DG +W WGNN YGQLG G       P+ 
Sbjct: 568 TNTQRPTPVRVPGLSGGVAAAAGYFHSLVLRSDGTVWGWGNNAYGQLGNGTANASFSPVQ 627

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLSG   V +AAG + S A+  DG V  WG   +G+LG  D   ++++ P  VN L+G
Sbjct: 628 VTGLSGG--VAVAAGDFQSLAVRSDGTVRAWGDNIYGQLG--DGTVTTRLAPVGVNGLSG 683

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              + V+ G   S+A+   G + ++G    G+LG+G
Sbjct: 684 G--MAVAAGNGFSLAVHSGGMLHAWGYNTDGQLGHG 717



 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 176/387 (45%), Gaps = 70/387 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSL-AICD--------- 55
           ++ AWG    GQLG G+      +  V+A+   +  +V AG  +SL A  D         
Sbjct: 302 TVWAWGQNTRGQLGDGSMTAS--LTPVQAIGLSEGEAVAAGETHSLVARSDGTVWAWGNN 359

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG  KT   P QV ALS    V A  G  H LAV   G  +AWG N +GQ G+ 
Sbjct: 360 IEGQRGDGSAKTSTAPVQVTALSGGFTVAA--GKAHALAVRSDGTVWAWGQNLFGQLGDG 417

Query: 110 PERK-------------------DDTGRILRRDIVI----------------PQRCAPKL 134
              +                   DD    L  D  +                 QR AP  
Sbjct: 418 TRMQRTAPVQVTGLSGGVAVAAGDDHSLGLCLDGTVWAWGQNTSGQLGDGTTAQRPAPVQ 477

Query: 135 I-----VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLI 185
           +     V  VAAG +HS+ ++ +G VW WG         G  +    PV+V GL  V  +
Sbjct: 478 VTELSGVVAVAAGTSHSLAVSSDGTVWAWGSNASGQLGDGTTRARLTPVQVAGLSGVVAV 537

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G FH+LA++ DG +WAWGNN + QLG G    R  P+ V GLSG   V  AAG +HS 
Sbjct: 538 AAGYFHSLAVRSDGTVWAWGNNSFFQLGDGTNTQRPTPVRVPGLSG--GVAAAAGYFHSL 595

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            L  DG V+GWG   +G+LG G  + S    P +V  L+G   V V+ G   S+A+  DG
Sbjct: 596 VLRSDGTVWGWGNNAYGQLGNGTANAS--FSPVQVTGLSGG--VAVAAGDFQSLAVRSDG 651

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            + ++G   +G+LG G   T   P+ V
Sbjct: 652 TVRAWGDNIYGQLGDGTVTTRLAPVGV 678



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 170/388 (43%), Gaps = 70/388 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG  + GQLG G   +R     V  L    V +V AGS +SLA+            
Sbjct: 202 TVWAWGRNDSGQLGDGTTVQRSAPVQVAGLS--GVVAVAAGSSHSLAVRSDGTVWAWGRN 259

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE- 108
                 DG T     P QV  LS    V A +  +H LAV   G  +AWG N  GQ G+ 
Sbjct: 260 SDGQLGDGTTSARLTPVQVTGLSGGVAVAAGM--FHSLAVRSDGTVWAWGQNTRGQLGDG 317

Query: 109 -----------------EPERKDDTGRILRR-----------------DIVIPQRCAPKL 134
                            E     +T  ++ R                 D       AP  
Sbjct: 318 SMTASLTPVQAIGLSEGEAVAAGETHSLVARSDGTVWAWGNNIEGQRGDGSAKTSTAPVQ 377

Query: 135 IVR-----QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLI 185
           +        VAAG  H++ +  +G VW WGQ        G   Q + PV+V GL     +
Sbjct: 378 VTALSGGFTVAAGKAHALAVRSDGTVWAWGQNLFGQLGDGTRMQRTAPVQVTGLSGGVAV 437

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H+L L  DG +WAWG N  GQLG G T  R  P+ V  LSG+  V +AAG  HS 
Sbjct: 438 AAGDDHSLGLCLDGTVWAWGQNTSGQLGDGTTAQRPAPVQVTELSGV--VAVAAGTSHSL 495

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A++ DG V+ WG    G+LG  D    +++ P +V  L+G  +V V+ G  HS+A+  DG
Sbjct: 496 AVSSDGTVWAWGSNASGQLG--DGTTRARLTPVQVAGLSG--VVAVAAGYFHSLAVRSDG 551

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            ++++G     +LG G       P+ VP
Sbjct: 552 TVWAWGNNSFFQLGDGTNTQRPTPVRVP 579



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 159/352 (45%), Gaps = 50/352 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           ++ AWG   DGQLG G   ER     V  L       V AG  +SLA+C           
Sbjct: 152 TVWAWGWNSDGQLGDGTTRERHVPVQVAGLSGGV--KVAAGDGHSLAVCLDGTVWAWGRN 209

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   + P QV  LS   +V  A G  H LAV   G  +AWG N  GQ G  
Sbjct: 210 DSGQLGDGTTVQRSAPVQVAGLSG--VVAVAAGSSHSLAVRSDGTVWAWGRNSDGQLG-- 265

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVR-----QVAAGGTHSVVLTREGHVWTWGQ---- 160
                        D     R  P  +        VAAG  HS+ +  +G VW WGQ    
Sbjct: 266 -------------DGTTSARLTPVQVTGLSGGVAVAAGMFHSLAVRSDGTVWAWGQNTRG 312

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G +     PV+  GL + + +A G  H+L  + DG +WAWGNN  GQ G G  +  
Sbjct: 313 QLGDGSMTASLTPVQAIGLSEGEAVAAGETHSLVARSDGTVWAWGNNIEGQRGDGSAKTS 372

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ V  LSG     +AAG  H+ A+  DG V+ WG+   G+L  GD  +  +  P +V
Sbjct: 373 TAPVQVTALSG--GFTVAAGKAHALAVRSDGTVWAWGQNLFGQL--GDGTRMQRTAPVQV 428

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             L+G   V V+ G  HS+ L  DG ++++G+   G+LG G       P++V
Sbjct: 429 TGLSGG--VAVAAGDDHSLGLCLDGTVWAWGQNTSGQLGDGTTAQRPAPVQV 478



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 135/257 (52%), Gaps = 20/257 (7%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A GG H LA+   G  +A G N  GQ G+    +       RR   +P +         V
Sbjct: 38  AAGGSHSLAIRPDGTVWAAGSNTSGQLGDGTTSE-------RR---VPAQVVGLSDAVLV 87

Query: 140 AAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           AAG +HS+ +  +G  W WG         G   + + PV+V GL + + +A G  H+L +
Sbjct: 88  AAGSSHSLAIRSDGTAWAWGHNGSGELGDGTTFRRTRPVQVTGLSEAEAVAAGDGHSLVV 147

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + DG +WAWG N  GQLG G T+ R  P+ V GLSG   V +AAG  HS A+  DG V+ 
Sbjct: 148 RSDGTVWAWGWNSDGQLGDGTTRERHVPVQVAGLSG--GVKVAAGDGHSLAVCLDGTVWA 205

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WGR + G+L  GD     +  P +V  L+G  +V V+ G +HS+A+  DG ++++GR   
Sbjct: 206 WGRNDSGQL--GDGTTVQRSAPVQVAGLSG--VVAVAAGSSHSLAVRSDGTVWAWGRNSD 261

Query: 316 GRLGYGRKVTTGQPMEV 332
           G+LG G       P++V
Sbjct: 262 GQLGDGTTSARLTPVQV 278



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 113/199 (56%), Gaps = 10/199 (5%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
           ++AAGG+HS+ +  +G VW  G         G   +  VP +V GL    L+A G+ H+L
Sbjct: 36  RLAAGGSHSLAIRPDGTVWAAGSNTSGQLGDGTTSERRVPAQVVGLSDAVLVAAGSSHSL 95

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           A++ DG  WAWG+N  G+LG G T  R++P+ V GLS    V  AAG  HS  +  DG V
Sbjct: 96  AIRSDGTAWAWGHNGSGELGDGTTFRRTRPVQVTGLSEAEAV--AAGDGHSLVVRSDGTV 153

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG    G+L  GD     + VP +V  L+G   V+V+ G  HS+A+  DG ++++GR 
Sbjct: 154 WAWGWNSDGQL--GDGTTRERHVPVQVAGLSGG--VKVAAGDGHSLAVCLDGTVWAWGRN 209

Query: 314 DHGRLGYGRKVTTGQPMEV 332
           D G+LG G  V    P++V
Sbjct: 210 DSGQLGDGTTVQRSAPVQV 228



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 114/271 (42%), Gaps = 54/271 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S  ++ AWGS   GQLG G    R        L P +V  +                 
Sbjct: 497 VSSDGTVWAWGSNASGQLGDGTTRAR--------LTPVQVAGL----------------- 531

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                        + +V  A G +H LAV   G  +AWG N + Q G+    +  T    
Sbjct: 532 -------------SGVVAVAAGYFHSLAVRSDGTVWAWGNNSFFQLGDGTNTQRPT---- 574

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
                 P R          AAG  HS+VL  +G VW WG         G       PV+V
Sbjct: 575 ------PVRVPGLSGGVAAAAGYFHSLVLRSDGTVWGWGNNAYGQLGNGTANASFSPVQV 628

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            GL     +A G F +LA++ DG + AWG+N YGQLG G    R  P+ V GLSG   + 
Sbjct: 629 TGLSGGVAVAAGDFQSLAVRSDGTVRAWGDNIYGQLGDGTVTTRLAPVGVNGLSG--GMA 686

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           +AAG   S A+   G ++ WG    G+LG G
Sbjct: 687 VAAGNGFSLAVHSGGMLHAWGYNTDGQLGHG 717


>gi|444915451|ref|ZP_21235583.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713382|gb|ELW54282.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 746

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 165/351 (47%), Gaps = 51/351 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--ENIPS 66
           AWGS   GQLG G    R    +V +L    V ++ AG  +SLA+  DG  +    N+  
Sbjct: 318 AWGSNVSGQLGDGTVSNRTSPVLVSSLT--GVTALSAGGNHSLALLADGTARAWGANVSG 375

Query: 67  QVNALSNTK------------IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
           Q+   + T+            +   A GG+H LAV   G   AWG N YGQ G       
Sbjct: 376 QLGDGTTTQRTLPVGLPGLTGVAALAAGGYHSLAVLANGTVRAWGHNTYGQLG------- 428

Query: 115 DTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                   D    QR AP ++     V  + AG  HS+ L  +G V  WG         G
Sbjct: 429 --------DGSTAQRTAPVVVPALTGVVSLTAGYDHSLALLSDGTVRAWGNNASGQLGDG 480

Query: 166 DIKQISVPVRVQGLEQVKLIAVGA-FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
              Q   PV+V GL  V  ++ G  +H LAL  DG + AWG N  GQLG G T  R  P+
Sbjct: 481 TTNQRGTPVQVSGLTNVVALSGGKLYHALALLSDGTVRAWGYNMNGQLGDGSTSNRWTPV 540

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGDNDKSSKMVPQKVNL 282
            V GL+   +V IAAGG +S AL  +G V  WG G +G LG  +     + K VP   N 
Sbjct: 541 AVSGLT--NVVAIAAGGDYSLALQSNGTVQSWGYGVYGPLGRDYDTYSPTPKAVPGVTN- 597

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
                +V ++ G  H +AL  DG ++++GR D G+LG G  V    P++VP
Sbjct: 598 -----VVAIAAGANHVLALRADGTVYAWGRNDFGQLGDGTTVQRNTPVQVP 643



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 165/349 (47%), Gaps = 42/349 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G+  +R    VV AL    V S+ AG  +SLA+  DG        
Sbjct: 415 TVRAWGHNTYGQLGDGSTAQRTAPVVVPALT--GVVSLTAGYDHSLALLSDGTVRAWGNN 472

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCG 107
                    T     P QV+ L+N   V A  GG  +H LA+   G   AWG N  GQ G
Sbjct: 473 ASGQLGDGTTNQRGTPVQVSGLTN---VVALSGGKLYHALALLSDGTVRAWGYNMNGQLG 529

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV--WTWGQPWPPG 165
           +       T          P   +    V  +AAGG +S+ L   G V  W +G   P G
Sbjct: 530 DGSTSNRWT----------PVAVSGLTNVVAIAAGGDYSLALQSNGTVQSWGYGVYGPLG 579

Query: 166 -DIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            D    S  P  V G+  V  IA GA H LAL+ DG ++AWG N++GQLG G T  R+ P
Sbjct: 580 RDYDTYSPTPKAVPGVTNVVAIAAGANHVLALRADGTVYAWGRNDFGQLGDGTTVQRNTP 639

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V GL+   +V IA G  HS AL  DG VY WG     +LG G    + +  P  V  L
Sbjct: 640 VQVPGLT--NVVAIATGWDHSLALRADGTVYAWGYNYARQLGDGST-ANYRQTPAPVPGL 696

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              ++V V+ GG  S+AL   G + ++G   HG LG G  +T   P+ V
Sbjct: 697 --TNVVAVTAGGNQSLALLSSGAVHAWGDNSHGELGNGSTLTPPAPVAV 743



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 173/387 (44%), Gaps = 64/387 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWG    GQLG G   +R     V  L      +V AG   SLA+  DG  +     
Sbjct: 65  TVRAWGDNASGQLGDGTTTQRSSPTAVPGLA--GAVAVSAGGEYSLALLGDGTVRAWGNN 122

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P  V  LS   +V  A G  H LA+   G   AWG N YGQ G  
Sbjct: 123 TYGQLGDGTTPHRASPGAVPGLSG--VVAIAAGNNHALALLSDGTVRAWGYNAYGQLG-- 178

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQP--- 161
                        D    QR  P  +     V  +AAG  HS+ +  +G V  WG     
Sbjct: 179 -------------DGTTTQRRTPVAVLGLTGVVAIAAGENHSLAVLADGTVRAWGNNTYG 225

Query: 162 -WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   Q + PV V  L  V  IA GA H+LA+  DG + AWG N  G+LG G T  R
Sbjct: 226 RLGDGTTTQRTSPVLVSSLTGVTAIAAGANHSLAVLADGTVRAWGYNASGRLGDGTTTQR 285

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ V GL+G+T  +I+AGG HS AL  DG    WG    G+L  GD   S++  P  V
Sbjct: 286 ATPVAVPGLTGVT--EISAGGGHSLALLADGTARAWGSNVSGQL--GDGTVSNRTSPVLV 341

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + L G  +  +S GG HS+AL  DG   ++G    G+LG G   TT Q   +P+ +P   
Sbjct: 342 SSLTG--VTALSAGGNHSLALLADGTARAWGANVSGQLGDG---TTTQ-RTLPVGLPGLT 395

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                     +A L A GG H+LA++ 
Sbjct: 396 G---------VAAL-AAGGYHSLAVLA 412



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 174/367 (47%), Gaps = 53/367 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           ++ AWG+   G+LG G   +R    +V +L    V ++ AG+ +SLA+            
Sbjct: 215 TVRAWGNNTYGRLGDGTTTQRTSPVLVSSLT--GVTAIAAGANHSLAVLADGTVRAWGYN 272

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P  V  L  T + + + GG H LA+   G A AWG N  GQ G  
Sbjct: 273 ASGRLGDGTTTQRATPVAVPGL--TGVTEISAGGGHSLALLADGTARAWGSNVSGQLG-- 328

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                        D  +  R +P L+     V  ++AGG HS+ L  +G    WG     
Sbjct: 329 -------------DGTVSNRTSPVLVSSLTGVTALSAGGNHSLALLADGTARAWGANVSG 375

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   Q ++PV + GL  V  +A G +H+LA+  +G + AWG+N YGQLG G T  R
Sbjct: 376 QLGDGTTTQRTLPVGLPGLTGVAALAAGGYHSLAVLANGTVRAWGHNTYGQLGDGSTAQR 435

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ V  L+G  +V + AG  HS AL  DG V  WG    G+LG G  ++  +  P +V
Sbjct: 436 TAPVVVPALTG--VVSLTAGYDHSLALLSDGTVRAWGNNASGQLGDGTTNQ--RGTPVQV 491

Query: 281 NLLAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP--INIP 337
           + L   ++V +S G   H++AL  DG + ++G   +G+LG G       P+ V    N+ 
Sbjct: 492 SGL--TNVVALSGGKLYHALALLSDGTVRAWGYNMNGQLGDGSTSNRWTPVAVSGLTNVV 549

Query: 338 APRNAGD 344
           A    GD
Sbjct: 550 AIAAGGD 556



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 160/355 (45%), Gaps = 46/355 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG    GQLG G   +R     V  L    V ++ AG  +SLA+  DG  +
Sbjct: 160 LLSDGTVRAWGYNAYGQLGDGTTTQRRTPVAVLGLT--GVVAIAAGENHSLAVLADGTVR 217

Query: 61  --------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                         T    S V   S T +   A G  H LAV   G   AWG N  G+ 
Sbjct: 218 AWGNNTYGRLGDGTTTQRTSPVLVSSLTGVTAIAAGANHSLAVLADGTVRAWGYNASGRL 277

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ- 160
           G               D    QR  P  +     V +++AGG HS+ L  +G    WG  
Sbjct: 278 G---------------DGTTTQRATPVAVPGLTGVTEISAGGGHSLALLADGTARAWGSN 322

Query: 161 ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                  G +   + PV V  L  V  ++ G  H+LAL  DG   AWG N  GQLG G T
Sbjct: 323 VSGQLGDGTVSNRTSPVLVSSLTGVTALSAGGNHSLALLADGTARAWGANVSGQLGDGTT 382

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R+ P+ + GL+G  +  +AAGG+HS A+  +G V  WG   +G+L  GD   + +  P
Sbjct: 383 TQRTLPVGLPGLTG--VAALAAGGYHSLAVLANGTVRAWGHNTYGQL--GDGSTAQRTAP 438

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             V  L G  +V ++ G  HS+AL  DG + ++G    G+LG G     G P++V
Sbjct: 439 VVVPALTG--VVSLTAGYDHSLALLSDGTVRAWGNNASGQLGDGTTNQRGTPVQV 491



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 123/268 (45%), Gaps = 30/268 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           + V+ A G  H L     G   AWG N  GQ G               D    QR +P  
Sbjct: 46  RAVRLASGKAHSLLATPDGTVRAWGDNASGQLG---------------DGTTTQRSSPTA 90

Query: 135 I-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLI 185
           +        V+AGG +S+ L  +G V  WG         G     + P  V GL  V  I
Sbjct: 91  VPGLAGAVAVSAGGEYSLALLGDGTVRAWGNNTYGQLGDGTTPHRASPGAVPGLSGVVAI 150

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H LAL  DG + AWG N YGQLG G T  R  P+ V GL+G  +V IAAG  HS 
Sbjct: 151 AAGNNHALALLSDGTVRAWGYNAYGQLGDGTTTQRRTPVAVLGLTG--VVAIAAGENHSL 208

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+  DG V  WG   +GRL  GD   + +  P  V+ L G  +  ++ G  HS+A+  DG
Sbjct: 209 AVLADGTVRAWGNNTYGRL--GDGTTTQRTSPVLVSSLTG--VTAIAAGANHSLAVLADG 264

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            + ++G    GRLG G       P+ VP
Sbjct: 265 TVRAWGYNASGRLGDGTTTQRATPVAVP 292



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 111/250 (44%), Gaps = 35/250 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG   +GQLG G+   R     V  L    V ++ AG   SLA+  +G  +
Sbjct: 511 LLSDGTVRAWGYNMNGQLGDGSTSNRWTPVAVSGLT--NVVAIAAGGDYSLALQSNGTVQ 568

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           +                   P  V  ++N  +V  A G  H LA+   G  YAWG N++G
Sbjct: 569 SWGYGVYGPLGRDYDTYSPTPKAVPGVTN--VVAIAAGANHVLALRADGTVYAWGRNDFG 626

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G+        G  ++R+   P +      V  +A G  HS+ L  +G V+ WG  +  
Sbjct: 627 QLGD--------GTTVQRNT--PVQVPGLTNVVAIATGWDHSLALRADGTVYAWGYNYAR 676

Query: 165 --GDIKQIS---VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD    +    P  V GL  V  +  G   +LAL   GA+ AWG+N +G+LG G T  
Sbjct: 677 QLGDGSTANYRQTPAPVPGLTNVVAVTAGGNQSLALLSSGAVHAWGDNSHGELGNGSTLT 736

Query: 220 RSQPIPVQGL 229
              P+ V GL
Sbjct: 737 PPAPVAVTGL 746



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P+R      V+L A G  H+L    DG + AWG+N  GQLG G T  RS P  V GL+G 
Sbjct: 39  PLRSGSPRAVRL-ASGKAHSLLATPDGTVRAWGDNASGQLGDGTTTQRSSPTAVPGLAG- 96

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
             V ++AGG +S AL  DG V  WG   +G+L  GD     +  P  V  L+G  +V ++
Sbjct: 97  -AVAVSAGGEYSLALLGDGTVRAWGNNTYGQL--GDGTTPHRASPGAVPGLSG--VVAIA 151

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            G  H++AL  DG + ++G   +G+LG G       P+ V
Sbjct: 152 AGNNHALALLSDGTVRAWGYNAYGQLGDGTTTQRRTPVAV 191


>gi|147900291|ref|NP_001086738.1| HECT and RLD domain containing E3 ubiquitin protein ligase 4
           [Xenopus laevis]
 gi|83405253|gb|AAI10973.1| MGC81587 protein [Xenopus laevis]
          Length = 897

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 176/351 (50%), Gaps = 35/351 (9%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDGKT---- 59
           ++ WG+   GQLG+G  +E E V   +  + +    VR V  G+R++  + DDG      
Sbjct: 1   MLCWGNASFGQLGLGGIDE-EVVIEPRRCDFFINKNVRDVGCGNRHTGFVLDDGTVYTCG 59

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     K+   P QV AL    IV  + G  H LA++D+G+ ++WG   +GQ G  
Sbjct: 60  CNDLGQLGHDKSRKKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHAAHGQIGVS 119

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
               +D  R+ R       +    + + QVA G  HS+ L++E ++++WGQ         
Sbjct: 120 I--AEDYIRVPRN-----IKSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGLG 172

Query: 165 GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            + ++ S P  ++ L  +    IA G  H+ AL   GA++ WG N++GQLG  D   RS 
Sbjct: 173 SEKRKESAPRHIKSLSGIPFAHIAAGGGHSFALTISGAIFGWGRNKFGQLGLNDETDRSD 232

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  ++ L    ++ I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P+KV  
Sbjct: 233 PALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSASHEVNPRKVFE 290

Query: 283 LAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L G  + Q++CG  H++A     G I+SFG G +G+LG G       P  V
Sbjct: 291 LMGNIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGIGSTSNKKSPSMV 341



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 155/313 (49%), Gaps = 38/313 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N  +     G  H   V D G  Y  G N+ GQ G +  RK           
Sbjct: 25  PRRCDFFINKNVRDVGCGNRHTGFVLDDGTVYTCGCNDLGQLGHDKSRKK---------- 74

Query: 125 VIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRV 176
             P++       I+  V+ G  H++ L  +G V++WG     G I        I VP  +
Sbjct: 75  --PEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHA-AHGQIGVSIAEDYIRVPRNI 131

Query: 177 QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLT 233
           + L  ++++  A G  H+LAL ++  +++WG N+YGQLG G + +  S P  ++ LSG+ 
Sbjct: 132 KSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGLGSEKRKESAPRHIKSLSGIP 191

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              IAAGG HS ALT  G ++GWGR + G+LG   ND++ +  P  +  L  + I+ + C
Sbjct: 192 FAHIAAGGGHSFALTISGAIFGWGRNKFGQLGL--NDETDRSDPALLKSLRSQKIIYICC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+ ALT++G +F+FG G +G+LG+        P +V          G+      I  
Sbjct: 250 GEDHTAALTKEGGVFTFGAGGYGQLGHNSASHEVNPRKVF------ELMGN------IVT 297

Query: 354 LVACGGRHTLAIV 366
            +ACG +HTLA V
Sbjct: 298 QIACGRQHTLAFV 310



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 143/312 (45%), Gaps = 39/312 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++   G  + GQLG  +++ R+    V AL+   + +V  G  ++LA+ D G+  +    
Sbjct: 54  TVYTCGCNDLGQLG--HDKSRKKPEQVGALDAQIIVAVSCGEAHTLALNDKGQVFSWGHA 111

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          +P  + +LS+ +IVQ A G  H LA+  +   Y+WG N+YGQ G 
Sbjct: 112 AHGQIGVSIAEDYIRVPRNIKSLSDIQIVQVACGHHHSLALSKESNIYSWGQNQYGQLGL 171

Query: 109 EPE-RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
             E RK+   R ++    IP           +AAGG HS  LT  G ++ WG+       
Sbjct: 172 GSEKRKESAPRHIKSLSGIP--------FAHIAAGGGHSFALTISGAIFGWGRNKFGQLG 223

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             D    S P  ++ L   K+I +  G  H  AL ++G ++ +G   YGQLG        
Sbjct: 224 LNDETDRSDPALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSASHEV 283

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG--DNDKSSKMVPQ 278
            P  V  L G  +  IA G  H+ A     G +Y +G G +G+LG G   N KS  MV  
Sbjct: 284 NPRKVFELMGNIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGIGSTSNKKSPSMV-- 341

Query: 279 KVNLLAGEDIVQ 290
           K N L  ED V+
Sbjct: 342 KGNWLTHEDYVR 353



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +I  WG  + GQLG+ +  +R    ++K+L   K+  +  G  ++ A+  +G   T    
Sbjct: 210 AIFGWGRNKFGQLGLNDETDRSDPALLKSLRSQKIIYICCGEDHTAALTKEGGVFTFGAG 269

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E  P +V  L    + Q A G  H LA V   GR Y++G    GQ G 
Sbjct: 270 GYGQLGHNSASHEVNPRKVFELMGNIVTQIACGRQHTLAFVPSSGRIYSFGLGGNGQLGI 329

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL-------IVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  +  +++ + +  +    +L        V+++ +GG  S       H +T    
Sbjct: 330 GSTSNKKSPSMVKGNWLTHEDYVRRLPEANGCYCVKRIYSGGDQSF-----AHYFTIQNC 384

Query: 162 WPPGDIKQISVPVRVQGLEQ 181
            PP D ++ +   ++  L++
Sbjct: 385 LPPDDFRKCNCSRKIWTLDE 404


>gi|395501384|ref|XP_003755075.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Sarcophilus harrisii]
          Length = 1049

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 176/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q   PG  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIRVPRNIKSLTD 136

Query: 182 VKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++  IA G +H+LAL +   +++WG N++GQLG G + + +S P  ++ L G+    +A
Sbjct: 137 IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLLGIPFTQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRFVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLG-----------------------------------FELK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            ++ P  + +L      Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 RQSSPQLIKSLLGIPFTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRFVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|115374764|ref|ZP_01462040.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368241|gb|EAU67200.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 750

 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 187/386 (48%), Gaps = 54/386 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWGS  +GQLG G          VK L    V +V AG ++SLA+       
Sbjct: 160 LRSDGTVWAWGSNFEGQLGDGTTNVSLVPVRVKKLT--GVVAVAAGEKHSLAVRSDGTVW 217

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T +  +P QV  LS    V   +  +H LAV   G  + WG N  G
Sbjct: 218 TWGFNGYGALGDGTTSSRKVPVQVQGLSGGVAVAGGV--YHSLAVRSDGTVWGWGANGVG 275

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+        G  +RR +++P +      V  VAAG + S+ +  +G VW WG     
Sbjct: 276 QLGD--------GTPMRR-VLVPVQAQGLSGVEAVAAGHSLSLAVRFDGTVWAWGGNSYG 326

Query: 161 PWPPGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                 I+ +S VPV+V GL     +   + H LA++ DG +WAWG N YGQLG G T  
Sbjct: 327 ALGNDTIETMSTVPVQVPGLSGGVTVVAASSHALAVRSDGTVWAWGGNHYGQLGDGTTSE 386

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R   +PVQGLSG  ++ +AA   HS A+  D  V+ WGR   G+L  GD     + VP  
Sbjct: 387 RLVAVPVQGLSG--VMAVAARQEHSLAVRSDATVWAWGRNYEGQL--GDGTTRRREVPVP 442

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L+   +V V+ G  HS+A+  DG ++++G  ++G++G G + +   P+ VP      
Sbjct: 443 VPKLS--SVVAVAAGRYHSLAVRFDGTVWAWGDNEYGQVGDGTETSRKAPVRVP------ 494

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
            N G GV        VA G  H+L +
Sbjct: 495 -NLGGGV-------AVAAGENHSLVL 512



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 169/383 (44%), Gaps = 74/383 (19%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  ++  WG+   GQLG G    R  V V +A     V +V AG   SLA+  DG     
Sbjct: 262 SDGTVWGWGANGVGQLGDGTPMRRVLVPV-QAQGLSGVEAVAAGHSLSLAVRFDGTVWAW 320

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                             +P QV  LS    V AA    H LAV   G  +AWGGN YGQ
Sbjct: 321 GGNSYGALGNDTIETMSTVPVQVPGLSGGVTVVAASS--HALAVRSDGTVWAWGGNHYGQ 378

Query: 106 CGEEPE----------------------------RKDDT--------------GRILRRD 123
            G+                               R D T              G   RR+
Sbjct: 379 LGDGTTSERLVAVPVQGLSGVMAVAARQEHSLAVRSDATVWAWGRNYEGQLGDGTTRRRE 438

Query: 124 IVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQIS--VPVRVQG 178
           + +P    PKL  V  VAAG  HS+ +  +G VW WG  +    GD  + S   PVRV  
Sbjct: 439 VPVP---VPKLSSVVAVAAGRYHSLAVRFDGTVWAWGDNEYGQVGDGTETSRKAPVRVPN 495

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           L     +A G  H+L L+ DG +WAWG N YGQLG G T     P+ VQGLSG   V +A
Sbjct: 496 LGGGVAVAAGENHSLVLRSDGTVWAWGGNHYGQLGNGITSDSPVPVQVQGLSGG--VAVA 553

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG ++S A+  DG V+ WG    G+L  GD   S   VP +V +      V V+ G +H+
Sbjct: 554 AGQYYSLAVRSDGTVWAWGLNFEGQL--GDGTASDSPVPVRVQVPGLSGGVAVAAGTSHA 611

Query: 299 VALTRDGHIFSFGRGDHGRLGYG 321
           + +  DG ++++G    G++G G
Sbjct: 612 LVVRSDGTVWAWGSNYDGQVGEG 634



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 165/382 (43%), Gaps = 73/382 (19%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------- 53
           S  ++ AWG    GQLG G   ER     V+ L    V +V A   +SLA+         
Sbjct: 364 SDGTVWAWGGNHYGQLGDGTTSERLVAVPVQGLS--GVMAVAARQEHSLAVRSDATVWAW 421

Query: 54  -------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG T+   +P  V  LS+  +V  A G +H LAV   G  +AWG NEYGQ 
Sbjct: 422 GRNYEGQLGDGTTRRREVPVPVPKLSS--VVAVAAGRYHSLAVRFDGTVWAWGDNEYGQV 479

Query: 107 GEEPE----------------------------RKDDT------------GRILRRDIVI 126
           G+  E                            R D T            G  +  D  +
Sbjct: 480 GDGTETSRKAPVRVPNLGGGVAVAAGENHSLVLRSDGTVWAWGGNHYGQLGNGITSDSPV 539

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQ--GLE 180
           P +         VAAG  +S+ +  +G VW WG  +      G      VPVRVQ  GL 
Sbjct: 540 PVQVQGLSGGVAVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDGTASDSPVPVRVQVPGLS 599

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAA 239
               +A G  H L ++ DG +WAWG+N  GQ+G G  + R   P+ VQGLS    + +AA
Sbjct: 600 GGVAVAAGTSHALVVRSDGTVWAWGSNYDGQVGEGAPRRRVLMPVQVQGLS--EGMAVAA 657

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  HS A+  DG V+ WG    G LG G  D+  + VP +   L G     V+ G +HS+
Sbjct: 658 GYNHSLAVRSDGSVWAWGGNTAGVLGDGTTDR--RTVPVQAQGLTGAR--AVAAGESHSL 713

Query: 300 ALTRDGHIFSFGRGDHGRLGYG 321
            L  DG  ++ G    G++G G
Sbjct: 714 VLRSDGTGWAMGSNASGQIGDG 735



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 134/272 (49%), Gaps = 20/272 (7%)

Query: 54  CDDGKTKTENIPSQVNALSNTKI-VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
           C       E  PS+ +AL   +   + A G  H  AV   G  +A G N +GQ G+    
Sbjct: 25  CGQPPVDWEEQPSRASALGGARARARIATGANHSWAVRPDGTVWAVGENVFGQLGDGTTS 84

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---PPGDIKQ 169
           +       RR   +P +      V  VA G  HS+ L  +G VW  G+       G    
Sbjct: 85  E-------RR---VPVQVQGLSGVVAVAVGAYHSLALRSDGTVWAVGRAACQGGDGTASD 134

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            +VP  V GL     +A G  H+LAL+ DG +WAWG+N  GQLG G T     P+ V+ L
Sbjct: 135 CTVPAPVPGLSGGVAVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTNVSLVPVRVKKL 194

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G  +V +AAG  HS A+  DG V+ WG   +G L  GD   SS+ VP +V  L+G   V
Sbjct: 195 TG--VVAVAAGEKHSLAVRSDGTVWTWGFNGYGAL--GDGTTSSRKVPVQVQGLSGG--V 248

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            V+ G  HS+A+  DG ++ +G    G+LG G
Sbjct: 249 AVAGGVYHSLAVRSDGTVWGWGANGVGQLGDG 280



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 140/302 (46%), Gaps = 43/302 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG  E GQ+G G    R+    V+        +V AG  +SL +  DG        
Sbjct: 467 TVWAWGDNEYGQVGDGTETSRK--APVRVPNLGGGVAVAAGENHSLVLRSDGTVWAWGGN 524

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T    +P QV  LS    V  A G ++ LAV   G  +AWG N  GQ G+ 
Sbjct: 525 HYGQLGNGITSDSPVPVQVQGLSGG--VAVAAGQYYSLAVRSDGTVWAWGLNFEGQLGDG 582

Query: 110 PERKDDTGRILRRDIVIPQRC-APKLIV-RQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
                        D  +P R   P L     VAAG +H++V+  +G VW WG  +  G +
Sbjct: 583 TAS----------DSPVPVRVQVPGLSGGVAVAAGTSHALVVRSDGTVWAWGSNYD-GQV 631

Query: 168 ------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                 +++ +PV+VQGL +   +A G  H+LA++ DG++WAWG N  G LG G T  R+
Sbjct: 632 GEGAPRRRVLMPVQVQGLSEGMAVAAGYNHSLAVRSDGSVWAWGGNTAGVLGDGTTDRRT 691

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+  QGL+G   V  AAG  HS  L  DG   GW  G +     GD   + ++     +
Sbjct: 692 VPVQAQGLTGARAV--AAGESHSLVLRSDGT--GWAMGSNASGQIGDGGPTQQVSTPTRS 747

Query: 282 LL 283
           LL
Sbjct: 748 LL 749



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 91/171 (53%), Gaps = 8/171 (4%)

Query: 163 PPGDIK-QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           PP D + Q S    + G      IA GA H+ A++ DG +WA G N +GQLG G T  R 
Sbjct: 28  PPVDWEEQPSRASALGGARARARIATGANHSWAVRPDGTVWAVGENVFGQLGDGTTSERR 87

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ VQGLSG+  V +A G +HS AL  DG V+  GR        GD   S   VP  V 
Sbjct: 88  VPVQVQGLSGV--VAVAVGAYHSLALRSDGTVWAVGRAA---CQGGDGTASDCTVPAPVP 142

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            L+G   V V+ GG HS+AL  DG ++++G    G+LG G    +  P+ V
Sbjct: 143 GLSGG--VAVAAGGLHSLALRSDGTVWAWGSNFEGQLGDGTTNVSLVPVRV 191


>gi|395501382|ref|XP_003755074.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Sarcophilus harrisii]
          Length = 1057

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 176/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q   PG  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIRVPRNIKSLTD 136

Query: 182 VKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++  IA G +H+LAL +   +++WG N++GQLG G + + +S P  ++ L G+    +A
Sbjct: 137 IQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLLGIPFTQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRFVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLG-----------------------------------FELK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            ++ P  + +L      Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 RQSSPQLIKSLLGIPFTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRFVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|395501386|ref|XP_003755076.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Sarcophilus harrisii]
          Length = 979

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 161/310 (51%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   V+ G  H++ L  +G V+ WG     Q   PG  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VSCGEAHTLALNDKGQVYAWGLDTDGQLGLPGTEEYIRVPRNIKSL 134

Query: 180 EQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             +++  IA G +H+LAL +   +++WG N++GQLG G + + +S P  ++ L G+    
Sbjct: 135 TDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQLGLGFELKRQSSPQLIKSLLGIPFTQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRFVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +A
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 175/355 (49%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDGKT---- 59
           ++ WG+   GQLG+G  +E E V   +  + +   KV+ V  G R+++ + DDG      
Sbjct: 1   MLCWGNASFGQLGLGGIDE-EIVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCG 59

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-- 107
                     K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  GQ G  
Sbjct: 60  CNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDTDGQLGLP 119

Query: 108 --EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP- 164
             EE  R       + R+I    +    + + Q+A G  HS+ L++   V++WGQ     
Sbjct: 120 GTEEYIR-------VPRNI----KSLTDIQIVQIACGYYHSLALSKGSEVFSWGQNKHGQ 168

Query: 165 ----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                ++K+ S P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D  
Sbjct: 169 LGLGFELKRQSSPQLIKSLLGIPFTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDEN 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P+
Sbjct: 229 DRFVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 287 KVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G   +R                                  
Sbjct: 152 LSKGSEVFSWGQNKHGQLGLGFELKR---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            ++ P  + +L      Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QSSPQLIKSLLGIPFTQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRFVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|149043901|gb|EDL97352.1| rCG61079, isoform CRA_a [Rattus norvegicus]
          Length = 546

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 173/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G + Q ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+        P +V   + +            I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGS------------IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G                                    + +
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGI-----------------------------------ECQ 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|145597074|ref|YP_001161371.1| hypothetical protein Strop_4565 [Salinispora tropica CNB-440]
 gi|145306411|gb|ABP56993.1| hypothetical protein Strop_4565 [Salinispora tropica CNB-440]
          Length = 477

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 156/354 (44%), Gaps = 34/354 (9%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +++AWG  +DG+LG G   +      V       + ++ AG  +SLA+            
Sbjct: 73  TVLAWGDNKDGELGDGTTTDSSTPIAVDLPAGTTITAIAAGHDHSLAVTSAGTALAWGNN 132

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   + P  V+  + T +   A G  H LAV   G A AWG N+ G+ G+ 
Sbjct: 133 LFGQLGDGSTTDSSTPIAVDLPAGTTVTAIAAGDDHSLAVTSAGTALAWGDNDRGELGD- 191

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G   RRD  +         V  +AAG  HS+ LT  G V TWG         G
Sbjct: 192 -------GTTTRRDTPVDVDLPAGTTVTAIAAGIGHSLALTSAGTVLTWGLNSDGQLGDG 244

Query: 166 DIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                S P+ V       V  IA G+ H+LA+   G + AWGNN  GQLG G T   S P
Sbjct: 245 TTTDSSTPIAVDLPAGTTVTAIAAGSLHSLAVTTAGTILAWGNNSDGQLGDGTTTNSSTP 304

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           I V   +  T+  I  G  HS A+T  G    WG  + G+LG G    SS   P  VNL 
Sbjct: 305 IAVNLPASTTITAIDGGRDHSLAVTSAGSALAWGDNDDGQLGDGTTTNSST--PIAVNLP 362

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           A   +   + G  HS+A+T  G I ++G    GRLG G    +  P+ V  N+P
Sbjct: 363 ADTTVTATTAGSLHSLAVTTAGTILAWGNNSDGRLGDGTTTNSSTPIAV--NLP 414



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 114/255 (44%), Gaps = 18/255 (7%)

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D      AWG N+ G+ G+        G        I         +  +AAG  HS+ +
Sbjct: 69  DASDTVLAWGDNKDGELGD--------GTTTDSSTPIAVDLPAGTTITAIAAGHDHSLAV 120

Query: 150 TREGHVWTWGQ----PWPPGDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWA 203
           T  G    WG         G     S P+ V       V  IA G  H+LA+   G   A
Sbjct: 121 TSAGTALAWGNNLFGQLGDGSTTDSSTPIAVDLPAGTTVTAIAAGDDHSLAVTSAGTALA 180

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG+N+ G+LG G T  R  P+ V   +G T+  IAAG  HS ALT  G V  WG    G+
Sbjct: 181 WGDNDRGELGDGTTTRRDTPVDVDLPAGTTVTAIAAGIGHSLALTSAGTVLTWGLNSDGQ 240

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           LG G    SS   P  V+L AG  +  ++ G  HS+A+T  G I ++G    G+LG G  
Sbjct: 241 LGDGTTTDSST--PIAVDLPAGTTVTAIAAGSLHSLAVTTAGTILAWGNNSDGQLGDGTT 298

Query: 324 VTTGQPMEVPINIPA 338
             +  P+ V  N+PA
Sbjct: 299 TNSSTPIAV--NLPA 311



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 129/316 (40%), Gaps = 32/316 (10%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------------ 55
           +AWG+   GQLG G+  +      V       V ++ AG  +SLA+              
Sbjct: 127 LAWGNNLFGQLGDGSTTDSSTPIAVDLPAGTTVTAIAAGDDHSLAVTSAGTALAWGDNDR 186

Query: 56  ----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T   + P  V+  + T +   A G  H LA+   G    WG N  GQ G+   
Sbjct: 187 GELGDGTTTRRDTPVDVDLPAGTTVTAIAAGIGHSLALTSAGTVLTWGLNSDGQLGD--- 243

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                G        I         V  +AAG  HS+ +T  G +  WG         G  
Sbjct: 244 -----GTTTDSSTPIAVDLPAGTTVTAIAAGSLHSLAVTTAGTILAWGNNSDGQLGDGTT 298

Query: 168 KQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              S P+ V       + A+  G  H+LA+   G+  AWG+N+ GQLG G T   S PI 
Sbjct: 299 TNSSTPIAVNLPASTTITAIDGGRDHSLAVTSAGSALAWGDNDDGQLGDGTTTNSSTPIA 358

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V   +  T+    AG  HS A+T  G +  WG    GRLG G    SS   P  VNL A 
Sbjct: 359 VNLPADTTVTATTAGSLHSLAVTTAGTILAWGNNSDGRLGDGTTTNSST--PIAVNLPAD 416

Query: 286 EDIVQVSCGGTHSVAL 301
             +   + G  HS+AL
Sbjct: 417 TTVTATTAGSAHSMAL 432


>gi|402880679|ref|XP_003903925.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Papio anubis]
          Length = 979

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++I  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|355562563|gb|EHH19157.1| hypothetical protein EGK_19807 [Macaca mulatta]
          Length = 1054

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++I  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|149043903|gb|EDL97354.1| rCG61079, isoform CRA_c [Rattus norvegicus]
          Length = 928

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G + Q ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G                                    + +
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGI-----------------------------------ECQ 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|402880677|ref|XP_003903924.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Papio anubis]
          Length = 1057

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++I  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|402880675|ref|XP_003903923.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Papio anubis]
          Length = 1049

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++I  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|58865718|ref|NP_001012074.1| probable E3 ubiquitin-protein ligase HERC4 [Rattus norvegicus]
 gi|81883244|sp|Q5PQN1.1|HERC4_RAT RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           4
 gi|56269464|gb|AAH87104.1| Hect domain and RLD 4 [Rattus norvegicus]
          Length = 1057

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G + Q ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G                                    + +
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGI-----------------------------------ECQ 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|194206384|ref|XP_001917973.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase HERC2
            [Equus caballus]
          Length = 4840

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3959 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4018

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4019 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4078

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         +  VAAGG HS  +T  G ++TWG+       
Sbjct: 4079 HGNRSPCDRPRVIESLRGIE--------LVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4130

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4131 HSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4190

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4191 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4248

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  +PA 
Sbjct: 4249 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVPAL 4304

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4305 Q--GKKVNR------VACGSAHTLA---WSTSK 4326



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 176/335 (52%), Gaps = 36/335 (10%)

Query: 46   GSRNSLAICDDGKTKTE-NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            G+ ++ ++C DG   ++  +PS    LS   +VQ A G     AV  +G+ YA       
Sbjct: 2967 GAVSTGSLCCDGVGLSQIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA------- 3019

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ 160
             CGE    +   G I    + IP++       +V++VA  +GG H+  LT +G V++WG+
Sbjct: 3020 -CGEATNGRLGLG-ISSGTVPIPRQVTALSSYVVKKVAVHSGGRHATALTVDGKVFSWGE 3077

Query: 161  --PWPPGDIKQISV--PVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                  G   +++   P  ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG 
Sbjct: 3078 GDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGH 3137

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            GD   + +P  V+ L G  ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  
Sbjct: 3138 GDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGC 3197

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  +PQ +  L G+ + Q+ CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V
Sbjct: 3198 N--IPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV 3255

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                       +G+  + I   VA G  H LA+ +
Sbjct: 3256 -----------EGLRGKKIVH-VAVGALHCLAVTD 3278



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  +VP+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAVPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPSALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAVPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    V AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3017 VYACGEATNGRLGLGISSGTVPIPRQ----VTALSSYVVKKVAVHSGGRHATALTVDGKV 3072

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3073 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3132

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3133 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3178 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3233

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3234 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3293

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3294 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3329



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4060 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4087

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4088 ----PRVIESLRGIELVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4143

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4144 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4190

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4191 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4250

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4251 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVPALQGKK 4308

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4309 VNRVACGSAHTLA 4321



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E +P  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAVPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPSALPGLDTKHIVGIACGPAQSFA 776



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3958 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4017

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4018 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4077

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4078 GHGNRSPCDR--PRVIESLRGIELVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4132



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3118 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3178 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3238 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3289

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3290 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3327


>gi|383872260|ref|NP_001244507.1| probable E3 ubiquitin-protein ligase HERC4 [Macaca mulatta]
 gi|355782894|gb|EHH64815.1| hypothetical protein EGM_18130 [Macaca fascicularis]
 gi|380786489|gb|AFE65120.1| putative E3 ubiquitin-protein ligase HERC4 isoform a [Macaca
           mulatta]
 gi|383411599|gb|AFH29013.1| putative E3 ubiquitin-protein ligase HERC4 isoform a [Macaca
           mulatta]
          Length = 1057

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++I  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|417405688|gb|JAA49548.1| Putative e3 ubiquitin-protein ligase herc4 [Desmodus rotundus]
          Length = 1049

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   +++WG N+YGQLG G D   ++ P  ++ L+G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFSWGQNKYGQLGLGIDCNKQASPQLIKSLTGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G +                              C+   + 
Sbjct: 152 LSKASEVFSWGQNKYGQLGLGID------------------------------CNKQAS- 180

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P  + +L+    +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 181 ----PQLIKSLTGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|395527072|ref|XP_003765675.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Sarcophilus
            harrisii]
          Length = 4483

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3707 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPIQLIGGEQTLFAVTADGKLYATGYG 3766

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3767 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3826

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  +AAGG HS  +T  G ++TWG+       
Sbjct: 3827 HGNRSPCDRPRVIESLRGIE--------VVDIAAGGAHSACITAAGDLYTWGKGRYGRLG 3878

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3879 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3938

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3939 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3996

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3997 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4052

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4053 Q--GKKINR------VACGSAHTLA---WSTSK 4074



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2733 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 2783

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G +++WG+      G   +++   P 
Sbjct: 2784 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKIFSWGEGDDGKLGHFSRMNCDKPR 2843

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2844 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 2903

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 2904 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2961

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2962 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3010

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3011 IVH-VAVGALHCLAVTD 3026



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 157/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R+++A+  DGK 
Sbjct: 2765 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSNYVVKKVAVHSGGRHAMALTVDGKI 2820

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 2821 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 2880

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 2881 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2925

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2926 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2981

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 2982 GKGDYFRLGHGTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3041

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3042 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3077



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2712 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 2761

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 2762 EGKVYACGEA-TNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKI 2820

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 2821 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 2880

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 2881 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 2938

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 2939 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 2974



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 122/278 (43%), Gaps = 48/278 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G   
Sbjct: 3808 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAGGAHSACITAAGDLY 3867

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 3868 TWGKGRYGRLGHGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGD 3927

Query: 103  YGQCG-------EEPERKDD-TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            YG+ G       + P + D  TG                L V +V  G   SV LT+ G 
Sbjct: 3928 YGKLGRGGSDGCKVPMKIDSLTG----------------LGVVKVECGSQFSVALTKSGA 3971

Query: 155  VWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNE 208
            V+TWG+        G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+
Sbjct: 3972 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 4031

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             GQLG G T    +P  V  L G  +  +A G  H+ A
Sbjct: 4032 EGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTLA 4069



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3706 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPIQLIGGEQTLFAVTADGKLYATGY 3765

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3766 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3825

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G ++++G+G +GRLG+G
Sbjct: 3826 GHGNRSPCDR--PRVIESLRGIEVVDIAAGGAHSACITAAGDLYTWGKGRYGRLGHG 3880



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 40/196 (20%)

Query: 123 DIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLE 180
           +++ P +C     L + Q+A      ++L+R G V+                   +Q   
Sbjct: 353 NVIGPIQCEGLANLGITQIACAEKRFLILSRNGRVY-------------------MQAYN 393

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
              L+ V A  +L     G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G
Sbjct: 394 SDTLVGVVAVFSLIF---GQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCG 450

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKM-------VPQKVNL-------LA 284
              S ALT DG+VY WG+G++ RLG G  +  +  K+       +PQ   L       L 
Sbjct: 451 SQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQATLPQANCLSKKXXXXLD 510

Query: 285 GEDIVQVSCGGTHSVA 300
            + IV ++CG   S A
Sbjct: 511 TKHIVGIACGPAQSFA 526



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 34/173 (19%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY------------------------GWGR 258
           PI  +GL+ L +  IA        L+ +G VY                         WG 
Sbjct: 357 PIQCEGLANLGITQIACAEKRFLILSRNGRVYMQAYNSDTLVGVVAVFSLIFGQVWSWGD 416

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           G++G+LG G +D      P+ +  L   D+V+V CG   SVALT+DG ++S+G+GD+ RL
Sbjct: 417 GDYGKLGRGGSDGCK--TPKLIEKLQDLDVVKVRCGSQFSVALTKDGQVYSWGKGDNQRL 474

Query: 319 GYGR-------KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G+G        K+  G    +P      +     +D + I   +ACG   + A
Sbjct: 475 GHGTEEHVRYPKLLEGLQATLPQANCLSKKXXXXLDTKHIVG-IACGPAQSFA 526



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2866 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2925

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2926 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2985

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2986 YFRLGH------GTDVHVRKPQVVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3037

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3038 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3075


>gi|383411601|gb|AFH29014.1| putative E3 ubiquitin-protein ligase HERC4 isoform b [Macaca
           mulatta]
          Length = 1049

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           +++I  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIIQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|312381821|gb|EFR27472.1| hypothetical protein AND_05798 [Anopheles darlingi]
          Length = 5197

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 182/402 (45%), Gaps = 62/402 (15%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG  +    +     +AL   +   +  G +   A+  DGK      
Sbjct: 4377 STIFGWGHNHRGQLGGLDGSRIKMPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGY 4436

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      T +   P+ V +L +  I + A+  GG HCLA+   G  ++WG  E G+ 
Sbjct: 4437 GAGGRLGIGGTDSVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKL 4496

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG 159
            G     +D   R             PKLI       V  +A G  HS  +T +GHV TWG
Sbjct: 4497 GHG--NRDSYDR-------------PKLIEALSGIGVIDIACGSAHSACITSQGHVLTWG 4541

Query: 160  Q----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQ 211
            +        GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+
Sbjct: 4542 KGRYGRLGHGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGK 4601

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            LG G +     P+ ++ L+GL +  +  G   S ALT  G VY WG+G++ RLG G+ D 
Sbjct: 4602 LGRGGSDGCKVPMKIESLAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDH 4661

Query: 272  SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
              +  P+KV  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G      +P  
Sbjct: 4662 VRR--PKKVAALQGKKIISIATGSLHCVACSDGGEVFTWGDNDEGQLGDGTVSAIQRPRL 4719

Query: 332  VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            V             +  + I K++ CG  HTLA+  +Q  E+
Sbjct: 4720 V-----------QSLQGKHIVKVI-CGSAHTLALSTYQLSEA 4749



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 159/334 (47%), Gaps = 64/334 (19%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT----- 59
            + A G G +G+LG+G+N        V  L  Y V+ V   +G ++++A+  DGK      
Sbjct: 3295 LYACGEGTNGRLGLGHNNNVPTPKQVPILSQYVVKKVAVHSGGKHAMALTLDGKVFSWGE 3354

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        T   P  +  L   +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3355 GEDGKLGHGNRLTLEKPKLIETLRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGH 3414

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                 D+  ++            PKL+       V QVA G     ++ LT EG V++WG
Sbjct: 3415 ----GDNCTQL-----------KPKLVTALADHRVVQVACGSRDAQTLCLTEEGLVFSWG 3459

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++        S+P +V+ L  V ++ +  GA  +LAL + G +W WG  +Y
Sbjct: 3460 D----GDFGKLGRGGSEGCSIPHQVERLNGVGVMQIECGAQFSLALTKSGEVWTWGKGDY 3515

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G  Q   +P P+QGL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G+ 
Sbjct: 3516 YRLGHGTDQHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVYAWGDNDHGQQGSGNT 3575

Query: 270  DKSSKMVPQKVNLLAGED---IVQVSCGGTHSVA 300
                 +V +K +L+ G D   + +V+CG +HSVA
Sbjct: 3576 -----IVNKKPSLVLGLDGIFVNRVACGSSHSVA 3604



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 156/312 (50%), Gaps = 28/312 (8%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P+  + LS  K +  A G      V   G+ YA G    G+ G        T + +   
Sbjct: 3264 LPTYSSVLSQLKPIHIAGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVPTPKQVP-- 3321

Query: 124  IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
             ++ Q    K+ V    +GG H++ LT +G V++WG+        G+   +  P  ++ L
Sbjct: 3322 -ILSQYVVKKVAVH---SGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLTLEKPKLIETL 3377

Query: 180  --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
              ++++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+   +V +
Sbjct: 3378 RTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTALADHRVVQV 3437

Query: 238  AAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            A G     +  LT++G V+ WG G+ G+LG G ++  S  +P +V  L G  ++Q+ CG 
Sbjct: 3438 ACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGGSEGCS--IPHQVERLNGVGVMQIECGA 3495

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
              S+ALT+ G ++++G+GD+ RLG+G    T Q +  P  I   R  G  V        V
Sbjct: 3496 QFSLALTKSGEVWTWGKGDYYRLGHG----TDQHVRKPTPIQGLR--GKKVIH------V 3543

Query: 356  ACGGRHTLAIVE 367
            A G  H LA+ +
Sbjct: 3544 AVGALHCLAVTD 3555



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 12/208 (5%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF----H 191
           VRQVA   T   +LT  G V +             + P  ++GLE V ++ + A     H
Sbjct: 584 VRQVACSETSIYILTTTGQVLSLQHS--NCHTPDTTAPKPIEGLESVNIVQLAAHCEGRH 641

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            LAL   G +++WGN E G+LG GDT  +  P  +  L+   +  +  G  +S A+T  G
Sbjct: 642 VLALTATGDVFSWGNGEGGRLGHGDTSSKDIPTRIVALAERQVTGVFCGSSYSAAITAAG 701

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS--CGGTHSVALTRDGHIFS 309
           E+Y WGRG +GRLG G+++   K +P  V +L  + ++ V+  CG  HS+ +T  G +++
Sbjct: 702 ELYTWGRGTYGRLGHGNSE--DKHLPTIVQVLKQQRVIHVALGCGDAHSLCVTDTGIVYA 759

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           +G GD G+LG G     G  + V I +P
Sbjct: 760 WGDGDFGKLGNG--TCNGSSVPVAIELP 785



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 25/267 (9%)

Query: 65  PSQVNALSNTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILR 121
           P  +  L +  IVQ A    G H LA+   G  ++WG  E G+ G  +   KD   RI  
Sbjct: 619 PKPIEGLESVNIVQLAAHCEGRHVLALTATGDVFSWGNGEGGRLGHGDTSSKDIPTRI-- 676

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
             + + +R      V  V  G ++S  +T  G ++TWG+        G+ +   +P  VQ
Sbjct: 677 --VALAER-----QVTGVFCGSSYSAAITAAGELYTWGRGTYGRLGHGNSEDKHLPTIVQ 729

Query: 178 GLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
            L+Q ++I V    G  H+L + + G ++AWG+ ++G+LG G     S P+ ++ L   +
Sbjct: 730 VLKQQRVIHVALGCGDAHSLCVTDTGIVYAWGDGDFGKLGNGTCNGSSVPVAIE-LPQCS 788

Query: 234 --LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
              V + +G   S AL  DG VY WG+G  GRLG G ++ ++   P+ +  L G++IV +
Sbjct: 789 DGAVKVFSGSHFSVALGRDGTVYSWGKGHGGRLGHGHSEHTAS--PKAIQALEGKNIVDL 846

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRL 318
           + G  H +ALT  G ++ +GR D  +L
Sbjct: 847 AVGLAHCLALTASGELYGWGRNDFQQL 873



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 121/272 (44%), Gaps = 32/272 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG GEDG+LG GN +  +   +++AL    V  +  GS +S  I   G   
Sbjct: 4479 LSSDGEVFSWGEGEDGKLGHGNRDSYDRPKLIEALSGIGVIDIACGSAHSACITSQGHVL 4538

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   + +  A G      L + D    ++WG  +
Sbjct: 4539 TWGKGRYGRLGHGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGD 4598

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G    R    G  +   I         L V +V  G   SV LTR G V+TWG+  
Sbjct: 4599 YGKLG----RGGSDGCKVPMKI----ESLAGLGVTKVECGSQFSVALTRSGSVYTWGKGD 4650

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G+   +  P +V  L+  K+I++  G+ H +A  + G ++ WG+N+ GQLG G 
Sbjct: 4651 YHRLGHGNTDHVRRPKKVAALQGKKIISIATGSLHCVACSDGGEVFTWGDNDEGQLGDGT 4710

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
                 +P  VQ L G  +V +  G  H+ AL+
Sbjct: 4711 VSAIQRPRLVQSLQGKHIVKVICGSAHTLALS 4742



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 20/201 (9%)

Query: 127 PQRCAPKLI-------VRQVAAG--GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
           P   APK I       + Q+AA   G H + LT  G V++WG         GD     +P
Sbjct: 614 PDTTAPKPIEGLESVNIVQLAAHCEGRHVLALTATGDVFSWGNGEGGRLGHGDTSSKDIP 673

Query: 174 VRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            R+  L   QV  +  G+ ++ A+   G L+ WG   YG+LG G+++ +  P  VQ L  
Sbjct: 674 TRIVALAERQVTGVFCGSSYSAAITAAGELYTWGRGTYGRLGHGNSEDKHLPTIVQVLKQ 733

Query: 232 LTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED-I 288
             ++ +A   G  HS  +TD G VY WG G+ G+LG G  + SS  VP  + L    D  
Sbjct: 734 QRVIHVALGCGDAHSLCVTDTGIVYAWGDGDFGKLGNGTCNGSS--VPVAIELPQCSDGA 791

Query: 289 VQVSCGGTHSVALTRDGHIFS 309
           V+V  G   SVAL RDG ++S
Sbjct: 792 VKVFSGSHFSVALGRDGTVYS 812



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 23/220 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T +++IP+++ AL+  ++     G  +  A+   G  Y WG   YG+ G         
Sbjct: 665 GDTSSKDIPTRIVALAERQVTGVFCGSSYSAAITAAGELYTWGRGTYGRLGHGNSEDKHL 724

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
             I++   V+ Q+   ++I   +  G  HS+ +T  G V+ WG     GD  ++      
Sbjct: 725 PTIVQ---VLKQQ---RVIHVALGCGDAHSLCVTDTGIVYAWGD----GDFGKLGNGTCN 774

Query: 171 --SVPVRVQGLEQVKLIAVGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
             SVPV ++ L Q    AV  F     ++AL  DG +++WG    G+LG G ++  + P 
Sbjct: 775 GSSVPVAIE-LPQCSDGAVKVFSGSHFSVALGRDGTVYSWGKGHGGRLGHGHSEHTASPK 833

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            +Q L G  +VD+A G  H  ALT  GE+YGWGR +  +L
Sbjct: 834 AIQALEGKNIVDLAVGLAHCLALTASGELYGWGRNDFQQL 873



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 31/236 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + +T  + +WG+GE G+LG G+   ++    + AL   +V  V  GS  S AI   G+  
Sbjct: 645 LTATGDVFSWGNGEGGRLGHGDTSSKDIPTRIVALAERQVTGVFCGSSYSAAITAAGELY 704

Query: 61  T----------------ENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNE 102
           T                +++P+ V  L   +++  A+  G  H L V D G  YAWG  +
Sbjct: 705 TWGRGTYGRLGHGNSEDKHLPTIVQVLKQQRVIHVALGCGDAHSLCVTDTGIVYAWGDGD 764

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           +G+ G         G  +   I +PQ C+   +  +V +G   SV L R+G V++WG+  
Sbjct: 765 FGKLGN----GTCNGSSVPVAIELPQ-CSDGAV--KVFSGSHFSVALGRDGTVYSWGKGH 817

Query: 163 PPGDI----KQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
                    +  + P  +Q LE   ++  AVG  H LAL   G L+ WG N++ QL
Sbjct: 818 GGRLGHGHSEHTASPKAIQALEGKNIVDLAVGLAHCLALTASGELYGWGRNDFQQL 873



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 72/264 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
            + S+  +  WG GE G+LG G+N  +    +V AL  ++V  V  GSR++  +C      
Sbjct: 3395 ITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTALADHRVVQVACGSRDAQTLCLTEEGL 3454

Query: 55   -------DDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                   D GK     ++  +IP QV  L+   ++Q   G    LA+   G  + WG  +
Sbjct: 3455 VFSWGDGDFGKLGRGGSEGCSIPHQVERLNGVGVMQIECGAQFSLALTKSGEVWTWGKGD 3514

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G        T + +R+   I      K+I   VA G  H + +T  G V+ W    
Sbjct: 3515 YYRLGH------GTDQHVRKPTPIQGLRGKKVI--HVAVGALHCLAVTDSGQVYAW---- 3562

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                      G+N++GQ G+G+T    +
Sbjct: 3563 ------------------------------------------GDNDHGQQGSGNTIVNKK 3580

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTA 246
            P  V GL G+ +  +A G  HS A
Sbjct: 3581 PSLVLGLDGIFVNRVACGSSHSVA 3604



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
             +V  WG  +  +LG     K SK+ +P   ++L+    + ++ G      +++DG +++
Sbjct: 3241 SKVLVWGLNDKEQLG---GLKGSKVKLPTYSSVLSQLKPIHIAGGSKSLFIVSQDGKLYA 3297

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC--GGRHTLAI 365
             G G +GRLG G       P +VPI              +++ K VA   GG+H +A+
Sbjct: 3298 CGEGTNGRLGLGHNNNVPTPKQVPIL------------SQYVVKKVAVHSGGKHAMAL 3343


>gi|351702482|gb|EHB05401.1| Putative E3 ubiquitin-protein ligase HERC4 [Heterocephalus glaber]
          Length = 1057

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 176/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++ V  G +H+LAL +   +++WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVSCGYYHSLALSKASEVFSWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFSWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|149043902|gb|EDL97353.1| rCG61079, isoform CRA_b [Rattus norvegicus]
          Length = 1049

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G + Q ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G                                    + +
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGI-----------------------------------ECQ 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|426255638|ref|XP_004021455.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Ovis aries]
          Length = 1057

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + IA
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|426255640|ref|XP_004021456.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Ovis aries]
          Length = 1049

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + IA
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|426255642|ref|XP_004021457.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Ovis aries]
          Length = 979

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    V                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFV---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + IA
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|326913714|ref|XP_003203179.1| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Meleagris
            gallopavo]
          Length = 4815

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3934 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3993

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3994 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4053

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4054 HGNRSPCDRPRVIESLRGIE--------VVDIAAGGAHSACITAAGDLFTWGKGRYGRLG 4105

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4106 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4165

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4166 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4223

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4224 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4279

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4280 Q--GKKINR------VACGSAHTLA---WSTSK 4301



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 167/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V +L++  IV+ A    G H LA+  
Sbjct: 430 VVQIACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIAAHSDGHHYLALSA 489

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  ++WG      CG       D GR+   D V  +   PKLI           V  +A
Sbjct: 490 NGEVFSWG------CG-------DGGRLGHGDTVPLEE--PKLISALSGKQAGKHVVHIA 534

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 535 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQT 594

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 595 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQ 654

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 655 VYTWGKGDNQRLGHGTEEHVR--YPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGS 712

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     ++T  +P  +P           G+D + I   +ACG   + A
Sbjct: 713 NDQCQHFDTLRITKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 752



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2961 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3011

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G +++WG+      G   +++   P 
Sbjct: 3012 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKIFSWGEGDDGKLGHFSRMNCDKPR 3071

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3072 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3131

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3132 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3189

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3190 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3238

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3239 IVH-VAVGALHCLAVTD 3254



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  +VQ A      L +   GR Y    N            D  G  L    
Sbjct: 419 PIQCEGLASLGVVQIACAEKRFLILSRNGRVYTQAYN-----------SDTLGPQLV--- 464

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
              Q  A + IV+  A + G H + L+  G V++WG             P  + K IS  
Sbjct: 465 ---QSLASRNIVKIAAHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISAL 521

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL GL 
Sbjct: 522 SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLK 581

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   DIV+V
Sbjct: 582 VIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDIVKV 639

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   S+ALT+DG ++++G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 640 RCGSQFSIALTKDGQVYTWGKGDNQRLGHGTEEHVRYPKLL-----------EGLKGKKV 688

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 689 ID-VAAGSTHCLALTE 703



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 157/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R+++A+  DGK 
Sbjct: 2993 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSNYVVKKVAVHSGGRHAMALTVDGKI 3048

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3049 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3108

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3109 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3153

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3154 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3209

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3210 GKGDYFRLGHGTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3269

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3270 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3305



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2940 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 2989

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 2990 EGKVYACGEA-TNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKI 3048

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 3049 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3108

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 3109 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 3166

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 3167 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 3202



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 122/278 (43%), Gaps = 48/278 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G   
Sbjct: 4035 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAGGAHSACITAAGDLF 4094

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 4095 TWGKGRYGRLGHGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGD 4154

Query: 103  YGQCG-------EEPERKDD-TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            YG+ G       + P + D  TG                L V +V  G   SV LT+ G 
Sbjct: 4155 YGKLGRGGSDGCKVPMKIDSLTG----------------LGVVKVECGSQFSVALTKSGA 4198

Query: 155  VWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNE 208
            V+TWG+        G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+
Sbjct: 4199 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 4258

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             GQLG G T    +P  V  L G  +  +A G  H+ A
Sbjct: 4259 EGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTLA 4296



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +++   + +WG G+ G+LG G+    E   ++ AL   +    V  +  GS  S AI  +
Sbjct: 487 LSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACGSTYSAAITAE 546

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                + IP  V  L   K++  + G      LAV + G+ ++W
Sbjct: 547 GELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSW 606

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   S+ LT++G V+TW
Sbjct: 607 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDIVKVRCGSQFSIALTKDGQVYTW 658

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 659 GKGDNQRLGHGTEEHVRYPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 718

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 719 FDTLRITKPEPAALPGLDTKHIVGIACGPAQSFA 752



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3933 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3992

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3993 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4052

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 4053 GHGNRSPCDR--PRVIESLRGIEVVDIAAGGAHSACITAAGDLFTWGKGRYGRLGHG 4107



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 46/158 (29%)

Query: 221 SQPIPVQGLSGLTLVDIAAG---------------------------------------- 240
           S PI  +GL+ L +V IA                                          
Sbjct: 417 SGPIQCEGLASLGVVQIACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIA 476

Query: 241 ----GWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKMVPQKVNLLAGEDIVQVSCG 294
               G H  AL+ +GEV+ WG G+ GRLG GD    +  K++       AG+ +V ++CG
Sbjct: 477 AHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACG 536

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            T+S A+T +G ++++GRG++GRLG+G       PM V
Sbjct: 537 STYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLV 574



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3094 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3153

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3154 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3213

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3214 YFRLGH------GTDVHVRKPQVVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3265

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3266 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3303


>gi|291404281|ref|XP_002718504.1| PREDICTED: hect domain and RLD 4 isoform 1 [Oryctolagus cuniculus]
          Length = 1057

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|390353202|ref|XP_789385.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Strongylocentrotus purpuratus]
          Length = 1070

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 182/396 (45%), Gaps = 47/396 (11%)

Query: 6   SIIAWGSGEDGQLGIGN--------NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG 57
           S+ +WG  +DGQLGI          +  RE    V AL   ++R +  G R++  +  DG
Sbjct: 2   SVFSWGCTQDGQLGISGLGDDVPSLSSPRE----VPALAGKQIREISCGLRHTCVLLRDG 57

Query: 58  KTKT----------ENIP----SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         ++ P    + V A     I Q + G  H LAV D+G+   WG N+ 
Sbjct: 58  TVMMCGANDRGQLGQDRPGSELAHVPATETLVITQVSCGNDHTLAVTDRGQVLGWGRNDR 117

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW- 162
           GQCG      +D  +   R +     C     V QVA G  HS+ LTR+G ++ WG    
Sbjct: 118 GQCGLSTGDSEDKRK--PRFLKSLSSCQ----VAQVACGSMHSMALTRDGRIFAWGDNSF 171

Query: 163 ------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                  PG       P ++  L  V +  +A G +H+ AL   GA++ WG N  GQLG 
Sbjct: 172 GQLGIGAPGRTLYRDHPQQLSSLPGVPIRRLACGGWHSFALSVSGAVFGWGKNNCGQLGL 231

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           G T+ R  P P++ L    +  IA G  ++  LT  G ++ +G+G  G+LG G +  S++
Sbjct: 232 GTTEDRVSPTPLKNLKTKQVKYIACGQNYTAILTASGGLFLFGQGSEGQLGHGSH--SNE 289

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + P+ V    G +I QV+CG  H++ L  R G  FS G+G  G+LG     +      VP
Sbjct: 290 VNPRSVQGFLGSEITQVACGRQHTLVLEGRTGRFFSLGQGSKGQLGLDNDSSKSCASPVP 349

Query: 334 INIPAPRN---AGDGVDRRWIAKLVACGGRHTLAIV 366
               AP +     +G + R I   +  GG  +  IV
Sbjct: 350 GPWEAPSSTEGCSNGEESRSIIGSIFAGGDQSFCIV 385



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 156/399 (39%), Gaps = 72/399 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           ++ + ++  WG    GQLG+G  E+R     +K L+  +V+ +  G +N  AI       
Sbjct: 212 LSVSGAVFGWGKNNCGQLGLGTTEDRVSPTPLKNLKTKQVKYIACG-QNYTAILTASGGL 270

Query: 56  ------------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQ-GRAYAWGGNE 102
                        G    E  P  V     ++I Q A G  H L ++ + GR ++ G   
Sbjct: 271 FLFGQGSEGQLGHGSHSNEVNPRSVQGFLGSEITQVACGRQHTLVLEGRTGRFFSLGQGS 330

Query: 103 YGQCGEEPERKDDTGRILRRDIVIP-------QRCA----PKLIVRQVAAGGTHSVVLTR 151
            GQ G +    +D+ +     +  P       + C+     + I+  + AGG  S  +  
Sbjct: 331 KGQLGLD----NDSSKSCASPVPGPWEAPSSTEGCSNGEESRSIIGSIFAGGDQSFCIVS 386

Query: 152 EGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
            G+      P  P D ++ ++P     +E V L          LQE              
Sbjct: 387 RGN-----DPDHPLDFRE-AIP----SIEPVVLTKD------LLQE-------------- 416

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
               ++ P  +P        + L   A            G ++ +G+G  G+LG G +  
Sbjct: 417 --VSESSPLLEPSKAVQTLEMALSSPACLNASFLVGAGSGGLFLFGQGSEGQLGHGSH-- 472

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           S+++ P+ V    G +I QV+CG  H++ L  R G  +S G+G  G+LG     +     
Sbjct: 473 SNEVNPRSVKDFLGNEITQVACGRQHTLVLEGRTGGFYSLGQGSKGQLGLDNGSSKSCAS 532

Query: 331 EVPINIPAPRN---AGDGVDRRWIAKLVACGGRHTLAIV 366
            VP    AP +     +G + R I   +  GG  +  IV
Sbjct: 533 LVPGPWEAPSSTEGCSNGEESRSIIGSIFAGGDQSFCIV 571



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 18/118 (15%)

Query: 253 VYGWGRGEHGRLG---FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           V+ WG  + G+LG    GD D  S   P++V  LAG+ I ++SCG  H+  L RDG +  
Sbjct: 3   VFSWGCTQDGQLGISGLGD-DVPSLSSPREVPALAGKQIREISCGLRHTCVLLRDGTVMM 61

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G  D G+LG  R      P     ++PA            +   V+CG  HTLA+ +
Sbjct: 62  CGANDRGQLGQDR------PGSELAHVPATET--------LVITQVSCGNDHTLAVTD 105


>gi|403273887|ref|XP_003928729.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Saimiri boliviensis boliviensis]
          Length = 979

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|390472682|ref|XP_003734522.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Callithrix
           jacchus]
          Length = 1049

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|291404283|ref|XP_002718505.1| PREDICTED: hect domain and RLD 4 isoform 2 [Oryctolagus cuniculus]
          Length = 1049

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|403273885|ref|XP_003928728.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 1057

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|296220557|ref|XP_002756356.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Callithrix jacchus]
          Length = 1057

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|395820632|ref|XP_003783667.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Otolemur
           garnettii]
          Length = 1049

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQTSPQLIKSLVGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 96/249 (38%), Gaps = 56/249 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGLD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLVGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG---- 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G    
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFP 347

Query: 229 LSGLTLVDI 237
            SG  L DI
Sbjct: 348 YSGQCLPDI 356


>gi|403273883|ref|XP_003928727.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 1049

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|326668760|ref|XP_686789.5| PREDICTED: e3 ubiquitin-protein ligase HERC2, partial [Danio rerio]
          Length = 3645

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 2764 TIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 2823

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 2824 AGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGELYSWGEAEDGKLG 2883

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++             + V  +AAGG HS  +T  G ++TWG+       
Sbjct: 2884 HGNRSPCDRPRVIES--------LRGVEVVDIAAGGAHSACITASGELYTWGKGRYGRLG 2935

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 2936 HGDSEDQLKPKLVEALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGDYGKLGRGGSDG 2995

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 2996 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3053

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3054 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 3109

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 3110 Q--GKKINR------VACGSAHTLA---WSTSK 3131



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 184/387 (47%), Gaps = 49/387 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK---- 60
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 1768 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTAEGKVYACGE 1827

Query: 61   -------------TENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                         T  IP Q++ALSN  + + A+  GG H +A+   G+ ++WG  + G+
Sbjct: 1828 ATNGRLGLGLSSGTIPIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGK 1887

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  +T  G +++WG      
Sbjct: 1888 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAAITSSGELYSWGLGEYGR 1939

Query: 162  WPPGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   +V  +A G+     LAL ++G +++WG+ ++G+LG G +
Sbjct: 1940 LGHGDNTTQLRPKLVKVLLGHRVVQVACGSRDAQTLALTDEGMVFSWGDGDFGKLGRGGS 1999

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            +  + P  ++ L+G  +  I  G   S ALT  G V+ WG+G++ RLG G +    K  P
Sbjct: 2000 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK--P 2057

Query: 278  QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            Q V  L G+ IV V+ G  H +A+T  G +F++G  DHG+ G G      +P  V     
Sbjct: 2058 QMVEGLRGKKIVHVAVGALHCLAVTETGQVFAWGDNDHGQQGNGTTTVNRKPTLV----- 2112

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLA 364
                   G++ + I + VACG  H++A
Sbjct: 2113 ------QGLEGQKITR-VACGSSHSVA 2132



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 168/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 1790 KVPSFSETLSALNVVQVAGGSKSLFAVTAEGKVYA--------CGEATNGRLGLG-LSSG 1840

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             I IP++ +     +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 1841 TIPIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 1900

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L++WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 1901 LIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGH 1960

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             +V +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 1961 RVVQVACGSRDAQTLALTDEGMVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2018

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2019 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQMV-----------EGLRGKK 2067

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ E
Sbjct: 2068 IVH-VAVGALHCLAVTE 2083



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 158/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R+++A+  DGK 
Sbjct: 1822 VYACGEATNGRLGLGLSSGTIPIPRQ----ISALSNYVVKKVAVHSGGRHAMALTVDGKV 1877

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y+WG  EY
Sbjct: 1878 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEY 1937

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PKL+       V QVA G     ++ LT EG 
Sbjct: 1938 GRLGH----GDNTTQL-----------RPKLVKVLLGHRVVQVACGSRDAQTLALTDEGM 1982

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 1983 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2038

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+T+ G+V+ WG  +HG+ 
Sbjct: 2039 GKGDYFRLGHGTDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTETGQVFAWGDNDHGQQ 2098

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2099 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 2134



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 1769 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTA 1818

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        I +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 1819 EGKVYACGEA-TNGRLGLGLSSGTIPIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKV 1877

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 1878 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEY 1937

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  +VQV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 1938 GRLGHGDN--TTQLRPKLVKVLLGHRVVQVACGSRDAQTLALTDEGMVFSWGDGDFGKLG 1995

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 1996 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 2031



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 48/278 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G+  
Sbjct: 2865 LSSEGELYSWGEAEDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELY 2924

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 2925 TWGKGRYGRLGHGDSEDQLKPKLVEALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGD 2984

Query: 103  YGQCG-------EEPERKDD-TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            YG+ G       + P + D  TG                L V +V  G   SV LT+ G 
Sbjct: 2985 YGKLGRGGSDGCKVPMKIDSLTG----------------LGVVKVECGSQFSVALTKSGA 3028

Query: 155  VWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNE 208
            V+TWG+        G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+
Sbjct: 3029 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 3088

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             GQLG G T    +P  V  L G  +  +A G  H+ A
Sbjct: 3089 EGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTLA 3126



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 2763 GTIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGY 2822

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GE+Y WG  E G+L
Sbjct: 2823 GAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGELYSWGEAEDGKL 2882

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G ++++G+G +GRLG+G
Sbjct: 2883 GHGNRSPCDR--PRVIESLRGVEVVDIAAGGAHSACITASGELYTWGKGRYGRLGHG 2937



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  + +WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 1923 ITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHRVVQVACGSRDAQTLALTDEGM 1982

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 1983 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2042

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  ++      K++   VA G  H + +T  G V+ WG   
Sbjct: 2043 YFRLGH------GTDVHVRKPQMVEGLRGKKIV--HVAVGALHCLAVTETGQVFAWGDND 2094

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2095 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 2132


>gi|296220559|ref|XP_002756357.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Callithrix jacchus]
          Length = 979

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRKSDFFINKKVQDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +A
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KV+ V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVQDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLLGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|332218229|ref|XP_003258261.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Nomascus leucogenys]
          Length = 979

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLVGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|312373149|gb|EFR20956.1| hypothetical protein AND_18231 [Anopheles darlingi]
          Length = 1270

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 156/311 (50%), Gaps = 29/311 (9%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P +++ +   +I +AA G  H L + + G+ Y+ G N++GQ G + E   +    L   
Sbjct: 337 VPRKMDWMHAKEIARAACGASHTLLLTNDGKMYSCGNNDHGQLGHDVESLPNKRPQLLTA 396

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVP--VRV 176
           +          I+ Q   G  HS+ LT  G V++W     GQ     D  +  +P  +R 
Sbjct: 397 L-------ENYIITQACCGTAHSLALTNWGQVYSWGSNAVGQLGQETDTTRQIIPRLIRS 449

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLV 235
              +QV  IA G +H LAL   G L+AWG+N YGQLG G T  + S P  VQ L+G+ + 
Sbjct: 450 IAAKQVVQIAAGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQSLAGVPIA 509

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA GG HS A++  G ++GWG+   G+LG   ND +S+  P ++  L    +  VSCG 
Sbjct: 510 FIACGGNHSFAVSKSGAIFGWGKNTFGQLGL--NDLNSRQFPTQLRTLRSLGVRYVSCGD 567

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
             SV LT  G +F+ G G  G+LG+G             N   PR   + +  +     +
Sbjct: 568 DFSVFLTAGGGVFTCGAGTFGQLGHGSCN----------NEILPRMVFELMGSKITQ--I 615

Query: 356 ACGGRHTLAIV 366
           ACG RHTLA V
Sbjct: 616 ACGRRHTLAFV 626



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 155/309 (50%), Gaps = 36/309 (11%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKT-------------ENIPSQ----VNALSNTKIVQAAI 81
           ++     G+ ++L + +DGK  +             E++P++    + AL N  I QA  
Sbjct: 348 EIARAACGASHTLLLTNDGKMYSCGNNDHGQLGHDVESLPNKRPQLLTALENYIITQACC 407

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G  H LA+ + G+ Y+WG N  GQ G+E    D T +I+ R I   +  A K +V Q+AA
Sbjct: 408 GTAHSLALTNWGQVYSWGSNAVGQLGQE---TDTTRQIIPRLI---RSIAAKQVV-QIAA 460

Query: 142 GGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLE--QVKLIAVGAFHNL 193
           G  H + LT  G ++ WG     G +      +++S P  VQ L    +  IA G  H+ 
Sbjct: 461 GHYHCLALTNSGELYAWGSN-AYGQLGLGMTNEKVSTPTLVQSLAGVPIAFIACGGNHSF 519

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           A+ + GA++ WG N +GQLG  D   R  P  ++ L  L +  ++ G   S  LT  G V
Sbjct: 520 AVSKSGAIFGWGKNTFGQLGLNDLNSRQFPTQLRTLRSLGVRYVSCGDDFSVFLTAGGGV 579

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGR 312
           +  G G  G+LG G  +  ++++P+ V  L G  I Q++CG  H++A     G I+ FG 
Sbjct: 580 FTCGAGTFGQLGHGSCN--NEILPRMVFELMGSKITQIACGRRHTLAFVPSRGKIYGFGL 637

Query: 313 GDHGRLGYG 321
              G+LG G
Sbjct: 638 SGVGQLGIG 646



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 21/213 (9%)

Query: 159 GQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG- 215
           G+ +P      + VP ++  +  +++   A GA H L L  DG +++ GNN++GQLG   
Sbjct: 324 GEVFPSLAKVMVMVPRKMDWMHAKEIARAACGASHTLLLTNDGKMYSCGNNDHGQLGHDV 383

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           ++ P  +P  +  L    +     G  HS ALT+ G+VY WG    G+LG  + D + ++
Sbjct: 384 ESLPNKRPQLLTALENYIITQACCGTAHSLALTNWGQVYSWGSNAVGQLG-QETDTTRQI 442

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG---RKVTTGQPMEV 332
           +P+ +  +A + +VQ++ G  H +ALT  G ++++G   +G+LG G    KV+T   ++ 
Sbjct: 443 IPRLIRSIAAKQVVQIAAGHYHCLALTNSGELYAWGSNAYGQLGLGMTNEKVSTPTLVQS 502

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              +P                 +ACGG H+ A+
Sbjct: 503 LAGVPI--------------AFIACGGNHSFAV 521



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 224 IPVQGLSGLTLVDIAAGGWHSTA----LTDDGEVYGWG--RGEHGRLGFGDNDKSSKMVP 277
           +PVQ    + +V + A           +T DGE    G  +GE     F    K   MVP
Sbjct: 283 LPVQANEYIQMVPVTAFRIEPVGTNGHMTVDGENVECGPIQGE----VFPSLAKVMVMVP 338

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           +K++ +  ++I + +CG +H++ LT DG ++S G  DHG+LG+        P + P  + 
Sbjct: 339 RKMDWMHAKEIARAACGASHTLLLTNDGKMYSCGNNDHGQLGHD---VESLPNKRPQLLT 395

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
           A  N        +I     CG  H+LA+  W
Sbjct: 396 ALEN--------YIITQACCGTAHSLALTNW 418



 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +I  WG    GQLG+ +   R++   ++ L    VR V  G   S+ +            
Sbjct: 526 AIFGWGKNTFGQLGLNDLNSRQFPTQLRTLRSLGVRYVSCGDDFSVFLTAGGGVFTCGAG 585

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                  G    E +P  V  L  +KI Q A G  H LA V  +G+ Y +G +  GQ G
Sbjct: 586 TFGQLGHGSCNNEILPRMVFELMGSKITQIACGRRHTLAFVPSRGKIYGFGLSGVGQLG 644


>gi|295696487|ref|YP_003589725.1| S-layer protein [Kyrpidia tusciae DSM 2912]
 gi|295412089|gb|ADG06581.1| S-layer domain protein [Kyrpidia tusciae DSM 2912]
          Length = 1423

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 180/382 (47%), Gaps = 49/382 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG   +GQLG G    R+     + L    V  V AG  +SLA+ DDG+  
Sbjct: 85  LTSDQTVWAWGDNTNGQLGDGTTTGRQTPTPAQGLP--SVAQVSAGESHSLALTDDGRVF 142

Query: 59  --------------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                         T     P QV  L +++ I   A GG H LA+   GR +AWG N  
Sbjct: 143 AWGLNSSGQLGDGTTADSRTPVQVQGLATDSTIKVVAAGGNHSLALTSDGRVFAWGKNSS 202

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQ G            +   I +  +  P   V  VAAGG HS+ LT +G ++ WG    
Sbjct: 203 GQLGNN--------STVDSSIPVQVQGLPA-NVTAVAAGGNHSLALTSDGRIYAWGLNSS 253

Query: 164 ----PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                G     S PV V GL    +   ++ G  H+LAL +DG ++AWG N YGQLG G 
Sbjct: 254 GQLGDGTTSNSSTPVLVAGLPAGSKPVAVSAGKDHSLALMQDGTVYAWGGNSYGQLGNGT 313

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T     P+ V GL+ +T V  +AGG  S ALT DG VY WG    G+L  GD   S++  
Sbjct: 314 TTASEMPVQVTGLANVTAV--SAGGSDSLALTSDGYVYAWGLNSSGQL--GDGTTSNRNT 369

Query: 277 PQKV-NLLAGEDI---VQVSCGGTHSVAL------TRDGHIFSFGRGDHGRLGYGRKVTT 326
           P +V ++L+   +   +Q+S G ++ +AL      T   +  + G G +  L Y +   +
Sbjct: 370 PVRVFSVLSTGALLTDLQLSDGSSNPIALSPGFTSTVMDYTATVGAGVNQVLLYAKPAAS 429

Query: 327 GQPMEVPINIPAPRNAGDGVDR 348
           G  M + +N  +P +   GV +
Sbjct: 430 GVTMTLTVNSQSPVSLAAGVKQ 451



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/258 (38%), Positives = 132/258 (51%), Gaps = 19/258 (7%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           GG H L +      +AWG N  GQ G+        G    R    P +  P   V QV+A
Sbjct: 78  GGSHSLVLTSDQTVWAWGDNTNGQLGD--------GTTTGRQTPTPAQGLPS--VAQVSA 127

Query: 142 GGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLA 194
           G +HS+ LT +G V+ WG         G       PV+VQGL     +K++A G  H+LA
Sbjct: 128 GESHSLALTDDGRVFAWGLNSSGQLGDGTTADSRTPVQVQGLATDSTIKVVAAGGNHSLA 187

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  DG ++AWG N  GQLG   T   S P+ VQGL    +  +AAGG HS ALT DG +Y
Sbjct: 188 LTSDGRVFAWGKNSSGQLGNNSTVDSSIPVQVQGLPA-NVTAVAAGGNHSLALTSDGRIY 246

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG    G+LG G    SS  V     L AG   V VS G  HS+AL +DG ++++G   
Sbjct: 247 AWGLNSSGQLGDGTTSNSSTPV-LVAGLPAGSKPVAVSAGKDHSLALMQDGTVYAWGGNS 305

Query: 315 HGRLGYGRKVTTGQPMEV 332
           +G+LG G    +  P++V
Sbjct: 306 YGQLGNGTTTASEMPVQV 323



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 126/234 (53%), Gaps = 19/234 (8%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V+AGG+HS+VLT +  VW WG         G       P   QGL  V  ++ G  H+LA
Sbjct: 75  VSAGGSHSLVLTSDQTVWAWGDNTNGQLGDGTTTGRQTPTPAQGLPSVAQVSAGESHSLA 134

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEV 253
           L +DG ++AWG N  GQLG G T     P+ VQGL +  T+  +AAGG HS ALT DG V
Sbjct: 135 LTDDGRVFAWGLNSSGQLGDGTTADSRTPVQVQGLATDSTIKVVAAGGNHSLALTSDGRV 194

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG+   G+L  G+N      +P +V  L   ++  V+ GG HS+ALT DG I+++G  
Sbjct: 195 FAWGKNSSGQL--GNNSTVDSSIPVQVQGLPA-NVTAVAAGGNHSLALTSDGRIYAWGLN 251

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G+LG G    +  P+ V         AG     + +A  V+ G  H+LA+++
Sbjct: 252 SSGQLGDGTTSNSSTPVLV---------AGLPAGSKPVA--VSAGKDHSLALMQ 294


>gi|440895825|gb|ELR47919.1| Putative E3 ubiquitin-protein ligase HERC4 [Bos grunniens mutus]
          Length = 1056

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + IA
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|164448576|ref|NP_001070362.2| probable E3 ubiquitin-protein ligase HERC4 [Bos taurus]
 gi|296472143|tpg|DAA14258.1| TPA: hect domain and RLD 4 [Bos taurus]
          Length = 1057

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + IA
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|432847192|ref|XP_004065976.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Oryzias
           latipes]
          Length = 1049

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 189/393 (48%), Gaps = 47/393 (11%)

Query: 7   IIAWGSGEDGQLGIG---NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---- 59
           ++ WG+  DGQLGIG   N      +C V       ++ V  G +++L +  DG      
Sbjct: 1   MLCWGNARDGQLGIGVEGNPVFEPRICHV--FSGRGLKEVACGGQHTLFLLQDGSVYTCG 58

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     K  N P  V AL   KI   + G  H +AV++QG+ + WG  + GQ G E
Sbjct: 59  SNSCGQLGHDKAGNSPELVGALDTQKITMVSCGRAHSVAVNEQGQVFVWGAGDGGQLGLE 118

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------ 163
               +   RI R   ++ + C     + QV  G  H + L+R+G ++TWGQ         
Sbjct: 119 --TAETAVRIPR---LLKKLCDHS--ISQVVCGNQHCIALSRDGQLFTWGQNSSGQLGLG 171

Query: 164 PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G+  ++S P  V+ L  + L  I  G  H  AL   GA++ WG N+ GQLG  D Q R+
Sbjct: 172 KGETSKLS-PSPVKSLAGIPLAQITAGGDHCFALSLSGAVFGWGKNKAGQLGLNDKQDRA 230

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ L    +V I+ G  H+ ALT  G ++ +G G  G+LG G ++  ++++P++V 
Sbjct: 231 VPCHIKFLRSQRVVYISCGDEHTAALTKSGGLFTFGDGSRGQLGHGSSN--NELLPRRVM 288

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-----IN 335
            L G ++ Q++CG  H++A     G +++FG   HG+LG G       P  V      +N
Sbjct: 289 ELMGTEVSQITCGRHHTLAFVPSSGTVYAFGCNSHGQLGTGILADLRSPHPVKNDFLTLN 348

Query: 336 IPAPR---NAGDGVDRRWIAKLVACGGRHTLAI 365
           +   +       G  +  + K++ CGG H+  +
Sbjct: 349 LRKGKVYLRIDTGFLKYTVIKII-CGGDHSFLM 380



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 20/238 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG H++ L ++G V+T G       G  K  + P  V  L  +++ +++ G  H
Sbjct: 35  LKEVACGGQHTLFLLQDGSVYTCGSNSCGQLGHDKAGNSPELVGALDTQKITMVSCGRAH 94

Query: 192 NLALQEDGALWAWGNNEYGQLG--TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           ++A+ E G ++ WG  + GQLG  T +T  R  P  ++ L   ++  +  G  H  AL+ 
Sbjct: 95  SVAVNEQGQVFVWGAGDGGQLGLETAETAVRI-PRLLKKLCDHSISQVVCGNQHCIALSR 153

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG+++ WG+   G+LG G  + +SK+ P  V  LAG  + Q++ GG H  AL+  G +F 
Sbjct: 154 DGQLFTWGQNSSGQLGLGKGE-TSKLSPSPVKSLAGIPLAQITAGGDHCFALSLSGAVFG 212

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G+   G+LG   K    Q   VP +I   R+      +R +   ++CG  HT A+ +
Sbjct: 213 WGKNKAGQLGLNDK----QDRAVPCHIKFLRS------QRVV--YISCGDEHTAALTK 258



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           ++  WG  + GQLG+ + ++R   C +K L   +V  +  G  ++ A+            
Sbjct: 209 AVFGWGKNKAGQLGLNDKQDRAVPCHIKFLRSQRVVYISCGDEHTAALTKSGGLFTFGDG 268

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                  G +  E +P +V  L  T++ Q   G  H LA V   G  YA+G N +GQ G 
Sbjct: 269 SRGQLGHGSSNNELLPRRVMELMGTEVSQITCGRHHTLAFVPSSGTVYAFGCNSHGQLGT 328

Query: 109 ---------EPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
                     P + D     LR+  V  +      K  V ++  GG HS ++        
Sbjct: 329 GILADLRSPHPVKNDFLTLNLRKGKVYLRIDTGFLKYTVIKIICGGDHSFLMYSSEQC-- 386

Query: 158 WGQPWPPGDIKQISV 172
              P  P D +  +V
Sbjct: 387 ---PEVPEDFRVFNV 398



 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 15/112 (13%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+LG G  + +    P+  ++ +G  + +V+CGG H++ L +DG +++ G    
Sbjct: 4   WGNARDGQLGIG-VEGNPVFEPRICHVFSGRGLKEVACGGQHTLFLLQDGSVYTCGSNSC 62

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+LG+ +   +            P   G  +D + I  +V+CG  H++A+ E
Sbjct: 63  GQLGHDKAGNS------------PELVG-ALDTQKIT-MVSCGRAHSVAVNE 100


>gi|115304951|gb|AAI23843.1| Hect domain and RLD 4 [Bos taurus]
          Length = 853

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + IA
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQIA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|332218227|ref|XP_003258260.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Nomascus leucogenys]
          Length = 1057

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLVGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|403381060|ref|ZP_10923117.1| regulator of chromosome condensation rcc1, partial [Paenibacillus
           sp. JC66]
          Length = 851

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 194/389 (49%), Gaps = 57/389 (14%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG---- 57
           A+  S+ ++G G  G+LG G+   +     ++ L    ++++ AG+ +SLA+   G    
Sbjct: 44  ANLVSVFSFGMGMYGKLGHGDTANQLAPKKIEGLS--DIQAIAAGTNHSLALTKSGDVYS 101

Query: 58  ------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        T ++  P ++  LS+ + + A  G +H LA+   G  Y++G    G 
Sbjct: 102 FGFGLFGRLGHGNTDSQLEPKKIEGLSDIQAIAA--GDFHSLALTKSGDVYSFGNGTSG- 158

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
                      G     D   P++      V+ +AAGG HS+ LT+ G V+++G      
Sbjct: 159 ----------LGHGNTEDQSTPKKIESLSDVQAIAAGGNHSLALTKSGDVYSFGFGLFGR 208

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              GD      P +++ L  ++ IA G  H+LAL + G ++++G   +GQLG GDT+ + 
Sbjct: 209 LGHGDTDSQLEPKKIEDLSDIQAIAAGGNHSLALTKSGDVYSFGWGLHGQLGHGDTENQL 268

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ LS +  V  AAG  HS ALT  GEVY +GRG  G+LG GD D   ++ P+K+ 
Sbjct: 269 TPKKIEDLSDIQAV--AAGANHSLALTKSGEVYSFGRGNTGQLGHGDTDD--QLTPKKIE 324

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            L  +DI  ++ G  HS+ALT+ G ++SFG G  G LG+G      +P ++         
Sbjct: 325 GL--KDIQAIAAGDFHSLALTKSGDVYSFGNGTSG-LGHGDTANQLEPKKI--------- 372

Query: 342 AGDGVDRRWIAKLVACGGRHTLAI-VEWQ 369
             +G+      + +A G  H+LA+ VE Q
Sbjct: 373 --EGLTD---IQAIAAGANHSLALAVEEQ 396


>gi|410975285|ref|XP_003994063.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like, partial
           [Felis catus]
          Length = 621

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|395770833|ref|ZP_10451348.1| hypothetical protein Saci8_13710 [Streptomyces acidiscabies 84-104]
          Length = 393

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 171/350 (48%), Gaps = 46/350 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS-----LAICD----- 55
           ++++WG+G  GQLG G   +      V +L    V  + AG  +S     LA  D     
Sbjct: 31  TVLSWGAGRTGQLGNGTLSDSLSPASVTSLFRGDVDQMSAGGTSSADSFTLARTDKTVKA 90

Query: 56  ----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                     +G    + +P+ V  L+N K +  A GG H LA+D  G+ Y+WG N YGQ
Sbjct: 91  WGHNSAGQLGNGGNTNQAVPTTVPRLTNVKDI--AAGGKHALALDTSGQVYSWGDNSYGQ 148

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G    R  D+         +P R       +Q++AG   S+ L   G V+ WG+     
Sbjct: 149 LGN--NRTGDS-------RTVPDRVQGMPKAKQISAGCDFSLALLENGKVYAWGRGIHGQ 199

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G+    SVP +V GLE +  I  G +H LA+  D  + +WG N YGQLG   T+  +
Sbjct: 200 LGTGNRATSSVPRQVTGLEDIVKIDAGCYHALAITADNTVKSWGYNLYGQLGNSATKSST 259

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN------DKSSKM 275
            P+ V  L+ ++  DI AG WH+ A+T D  VYGWG  ++G+L  GD        ++++ 
Sbjct: 260 VPVDVDWLTDVS--DIEAGAWHNYAMTSDSHVYGWGNNQYGQLLEGDQADGDNISRTNRT 317

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            P ++  L G  +  ++ G  H VA+T D  +F++G    G+LG G  V+
Sbjct: 318 APVEIPRLEG--VQHLAAGARHGVAVTAD-DVFTWGNNSEGQLGNGTTVS 364



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 44/249 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDGKT------ 59
           + +WG    GQLG  NN   +   V   ++   K + + AG   SLA+ ++GK       
Sbjct: 138 VYSWGDNSYGQLG--NNRTGDSRTVPDRVQGMPKAKQISAGCDFSLALLENGKVYAWGRG 195

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                      T ++P QV  L +  IV+   G +H LA+       +WG N YGQ G  
Sbjct: 196 IHGQLGTGNRATSSVPRQVTGLED--IVKIDAGCYHALAITADNTVKSWGYNLYGQLGNS 253

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------- 162
             +             +P        V  + AG  H+  +T + HV+ WG          
Sbjct: 254 ATKSS----------TVPVDVDWLTDVSDIEAGAWHNYAMTSDSHVYGWGNNQYGQLLEG 303

Query: 163 PPGDIKQIS-----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
              D   IS      PV +  LE V+ +A GA H +A+  D  ++ WGNN  GQLG G T
Sbjct: 304 DQADGDNISRTNRTAPVEIPRLEGVQHLAAGARHGVAVTADD-VFTWGNNSEGQLGNGTT 362

Query: 218 QPRSQPIPV 226
             R   + +
Sbjct: 363 VSRFDSVKI 371



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 29/200 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           + AWG G  GQLG GN         V  LE   +  + AG  ++LAI  D          
Sbjct: 189 VYAWGRGIHGQLGTGNRATSSVPRQVTGLE--DIVKIDAGCYHALAITADNTVKSWGYNL 246

Query: 59  --------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   TK+  +P  V+ L++   ++A  G WH  A+      Y WG N+YGQ  E  
Sbjct: 247 YGQLGNSATKSSTVPVDVDWLTDVSDIEA--GAWHNYAMTSDSHVYGWGNNQYGQLLEGD 304

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
           +   D   I R +   P    P+L  V+ +AAG  H V +T +  V+TWG         Q
Sbjct: 305 QADGD--NISRTNRTAPVEI-PRLEGVQHLAAGARHGVAVTAD-DVFTWGN----NSEGQ 356

Query: 170 ISVPVRVQGLEQVKLIAVGA 189
           +     V   + VK++  G+
Sbjct: 357 LGNGTTVSRFDSVKILQEGS 376


>gi|3414809|gb|AAC31431.1| rjs [Mus musculus]
          Length = 4836

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3955 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4014

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4015 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4074

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4075 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4126

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4127 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4186

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4187 SKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4244

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4245 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4300

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4301 Q--GKKVNR------VACGSAHTLA---WSTSK 4322



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGLGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPTALP-----------GLDSKHIVG-IACGPAQSFA 776



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 3039

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 3040 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 3096

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3097 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3156

Query: 237  IAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3157 VACGTRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3214

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3215 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3262

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3263 VAVGALHCLAVTD 3275



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 151/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 443 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG G +     P  +           +G+  
Sbjct: 661 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGLGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAG--GTHSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGTRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4056 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4083

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4084 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4139

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4140 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4186

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4187 SKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4246

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4247 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4304

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4305 VNRVACGSAHTLA 4317



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGLGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPTALPGLDSKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3954 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4013

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4014 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4073

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4074 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4128



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  G+R+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGTRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|344239412|gb|EGV95515.1| putative E3 ubiquitin-protein ligase HERC2 [Cricetulus griseus]
          Length = 958

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 224 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 283

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 284 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 343

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                  D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 344 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 395

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 396 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 455

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 456 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 513

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 514 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 569

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
           +  G  V+R      VACG  HTLA   W T +
Sbjct: 570 Q--GKKVNR------VACGSAHTLA---WSTSK 591



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 325 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 352

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
               P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 353 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 408

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
             L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 409 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 455

Query: 171 -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
             VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 456 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 515

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 516 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 573

Query: 288 IVQVSCGGTHSVA 300
           + +V+CG  H++A
Sbjct: 574 VNRVACGSAHTLA 586



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 56/176 (31%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
           G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 223 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 282

Query: 233 -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                            TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 283 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 342

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+
Sbjct: 343 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 396


>gi|224043006|ref|XP_002197493.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Taeniopygia guttata]
          Length = 4839

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3958 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4017

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4018 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSFEGEVYSWGEAEDGKLG 4077

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4078 HGNRSPCDRPRVIESLRGIE--------VVDIAAGGAHSACITAAGDLFTWGKGRYGRLG 4129

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4130 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4189

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4190 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4247

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4248 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4303

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4304 Q--GKKINR------VACGSAHTLA---WSTSK 4325



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 167/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V +L++  IV+ A    G H LA+  
Sbjct: 454 VMQVACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIAAHSDGHHYLALSA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  ++WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 NGEVFSWG------CG-------DGGRLGHGDTVPLEE--PKMISALSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYTWGKGDNQRLGHGTEEHVR--YPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     ++T  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRITKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2985 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3035

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 3036 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3095

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3096 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3155

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3213

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3214 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3262

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3263 IVH-VAVGALHCLAVTD 3278



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  ++Q A      L +   GR Y    N            D  G  L    
Sbjct: 443 PIQCEGLANLGVMQVACAEKRFLILSRNGRVYTQAYN-----------SDTLGPQLV--- 488

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
              Q  A + IV+  A + G H + L+  G V++WG             P  + K IS  
Sbjct: 489 ---QSLASRNIVKIAAHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKMISAL 545

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL GL 
Sbjct: 546 SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLK 605

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   DIV+V
Sbjct: 606 VIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDIVKV 663

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   S+ALT+DG ++++G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 664 RCGSQFSIALTKDGQVYTWGKGDNQRLGHGTEEHVRYPKLL-----------EGLKGKKV 712

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 713 ID-VAAGSTHCLALTE 727



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 156/334 (46%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     +   + AL  Y V+ V   +G R+++A+  DGK  +  
Sbjct: 3017 VYACGEATNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWG 3076

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 3077 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLG 3136

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 3137 H----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 3181

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 3182 GD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 3238 YFRLGHGTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGT 3297

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3298 TTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3329



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +++   + +WG G+ G+LG G+    E   ++ AL   +    V  +  GS  S AI  +
Sbjct: 511 LSANGEVFSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                + IP  V  L   K++  + G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   S+ LT++G V+TW
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDIVKVRCGSQFSIALTKDGQVYTW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRITKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3957 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4016

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4017 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSFEGEVYSWGEAEDGKL 4076

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 4077 GHGNRSPCDR--PRVIESLRGIEVVDIAAGGAHSACITAAGDLFTWGKGRYGRLGHG 4131



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 46/158 (29%)

Query: 221 SQPIPVQGLSGLTLVDIAAG---------------------------------------- 240
           S PI  +GL+ L ++ +A                                          
Sbjct: 441 SGPIQCEGLANLGVMQVACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIA 500

Query: 241 ----GWHSTALTDDGEVYGWGRGEHGRLGFGDN--DKSSKMVPQKVNLLAGEDIVQVSCG 294
               G H  AL+ +GEV+ WG G+ GRLG GD    +  KM+       AG+ +V ++CG
Sbjct: 501 AHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACG 560

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            T+S A+T +G ++++GRG++GRLG+G       PM V
Sbjct: 561 STYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLV 598



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3118 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3178 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3238 YFRLGH------GTDVHVRKPQVVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3289

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3290 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3327


>gi|332218225|ref|XP_003258259.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Nomascus leucogenys]
          Length = 1049

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLVGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLVGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|426378407|ref|XP_004055918.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like, partial [Gorilla gorilla gorilla]
          Length = 4586

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +  LA+  DGK       
Sbjct: 3705 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLLAVTADGKLYATGYG 3764

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3765 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3824

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3825 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 3876

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3877 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3936

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3937 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3994

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3995 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4050

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4051 Q--GKKVNR------VACGSAHTLA---WSTSK 4072



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2733 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 2783

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 2784 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 2843

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2844 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 2903

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 2904 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2961

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2962 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3010

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3011 IVH-VAVGALHCLAVTD 3026



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 166/353 (47%), Gaps = 56/353 (15%)

Query: 33  KALEPYKVRSVVAGSRNSLAICDDGKTKTEN------IPSQVNALSNTKIVQAAI--GGW 84
           K L    V  +    +  L +  +G+  T+       +P  V  L++  +V+ A    G 
Sbjct: 423 KGLANLGVTQIACAEKRLLIVXRNGRVXTQAYNSDTLVPQLVQGLASRNVVKIAAHSDGH 482

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI--------- 135
           H LA+   G  Y+WG      CG+        GR L     +P    PK+I         
Sbjct: 483 HYLALAATGEVYSWG------CGD--------GRRLGHGDTVPLE-EPKVISAFSGKQAG 527

Query: 136 --VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV-- 187
             V  +A G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V  
Sbjct: 528 KHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVAC 587

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G    LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S 
Sbjct: 588 GSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSI 647

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALT DG+VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D 
Sbjct: 648 ALTKDGQVYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDS 705

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            + S+G  D  +     +VT  +P  +P           G+D + I   +ACG
Sbjct: 706 EVHSWGSNDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACG 746



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L V   GR      N                     D 
Sbjct: 419 PIQCKGLANLGVTQIACAEKRLLIVXRNGRVXTQAYNS--------------------DT 458

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           ++PQ     A + +V+  A + G H + L   G V++WG             P  + K I
Sbjct: 459 LVPQLVQGLASRNVVKIAAHSDGHHYLALAATGEVYSWGCGDGRRLGHGDTVPLEEPKVI 518

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 519 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 578

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 579 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 636

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 637 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 685

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 686 KKVID-VAAGSTHCLALTE 703



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2765 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 2820

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 2821 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 2880

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 2881 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2925

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2926 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2981

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 2982 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3041

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3042 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3077



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3806 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3833

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3834 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 3889

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 3890 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 3936

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3937 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3996

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3997 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4054

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4055 VNRVACGSAHTLA 4067



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 134/314 (42%), Gaps = 62/314 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A+T  + +WG G+  +LG G+            LE  KV S  +G +            
Sbjct: 487 LAATGEVYSWGCGDGRRLGHGDT---------VPLEEPKVISAFSGKQ------------ 525

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                      +   +V  A G  +  A+  +G  Y WG   YG+ G             
Sbjct: 526 -----------AGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSE-------- 566

Query: 121 RRDIVIPQRCA----PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
             D  IP   A     K+I     +G   ++ +T  G VW+WG     GD  ++      
Sbjct: 567 --DEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD----GDYGKLGRGGSD 620

Query: 171 --SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
               P  ++ L+ + ++ V  G+  ++AL +DG +++WG  +  +LG G  +    P  +
Sbjct: 621 GCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL 680

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           +GL G  ++D+AAG  H  ALT+D EV+ WG  +  +    D  + +K  P  +  L  +
Sbjct: 681 EGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQ--HFDTLRVTKPEPAALPGLDTK 738

Query: 287 DIVQVSCGGTHSVA 300
            IV ++CG   S A
Sbjct: 739 HIVGIACGPAQSSA 752



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL----------TLVDIAA--------- 239
            G ++ WG+N  GQLG  +      P P + L+ L          TL+ + A         
Sbjct: 3704 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLLAVTADGKLYATGY 3763

Query: 240  -----------------------------------GGWHSTALTDDGEVYGWGRGEHGRL 264
                                               GG H  AL+ +GEVY WG  E G+L
Sbjct: 3764 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3823

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3824 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 3878



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2866 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2925

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2926 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2985

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2986 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3037

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3038 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3075


>gi|444911351|ref|ZP_21231526.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444718109|gb|ELW58925.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 1085

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 183/377 (48%), Gaps = 55/377 (14%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
            +WG+   GQLG G +        V+   P  ++ V AG  +SLA+  DG           
Sbjct: 710  SWGNNAYGQLGDGTSTLHP--VPVQVPGPSAMKGVAAGGSHSLAVRSDGTVWAWGNNGSG 767

Query: 60   -------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                        P QV  L +   V A     H LAV   G  +AWGGN  GQ G     
Sbjct: 768  ELGDGTGLQRPRPVQVQGLGSAVAVSAGTN--HSLAVQSDGTVWAWGGNSQGQLG----- 820

Query: 113  KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIK-- 168
             D TG I R    +P R +    V  V+AG  HS+ L  +G VW WG  +    GD    
Sbjct: 821  -DGTG-ITRY---VPVRVSGLNGVMAVSAGSAHSLALRSDGTVWAWGYNFYGQLGDATST 875

Query: 169  QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            Q  VP++V GL  V  IA G  H+LA++ DG +WAWG N YGQLG G    RS P+ V G
Sbjct: 876  QRLVPIQVPGLTGVVSIAAGTHHSLAVRSDGTVWAWGYNFYGQLGDGTKIQRSPPVQVPG 935

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L+G  +V +AAG +HS A+  +G V+ WG   HG+L  GD   + +++P  ++  +G   
Sbjct: 936  LAG--MVSVAAGTYHSLAVHSNGTVWAWGYNNHGQL--GDGTTTQRLLPVPISSSSG--- 988

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            V  +    HS+ +  DG ++ +G  +  +LG G   T+ + M  P ++P      +GV  
Sbjct: 989  VIAAAANWHSLVVRTDGTVWGWGSNNASQLGDGS--TSDRKMPTPSSVP------NGV-- 1038

Query: 349  RWIAKLVACGGRHTLAI 365
                + ++ G  H+LA+
Sbjct: 1039 ----RSISSGANHSLAL 1051



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 166/336 (49%), Gaps = 41/336 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
            ++ AWG+   G+LG G   +R     V+ L      +V AG+ +SLA+  DG        
Sbjct: 757  TVWAWGNNGSGELGDGTGLQRPRPVQVQGLG--SAVAVSAGTNHSLAVQSDGTVWAWGGN 814

Query: 60   ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       T  +P +V+ L+    V A  G  H LA+   G  +AWG N YGQ G+ 
Sbjct: 815  SQGQLGDGTGITRYVPVRVSGLNGVMAVSA--GSAHSLALRSDGTVWAWGYNFYGQLGDA 872

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDI 167
               +           ++P +      V  +AAG  HS+ +  +G VW WG  +    GD 
Sbjct: 873  TSTQR----------LVPIQVPGLTGVVSIAAGTHHSLAVRSDGTVWAWGYNFYGQLGDG 922

Query: 168  KQI--SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             +I  S PV+V GL  +  +A G +H+LA+  +G +WAWG N +GQLG G T  R  P+P
Sbjct: 923  TKIQRSPPVQVPGLAGMVSVAAGTYHSLAVHSNGTVWAWGYNNHGQLGDGTTTQRLLPVP 982

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            +   SG   V  AA  WHS  +  DG V+GWG     +LG  D   S + +P   ++  G
Sbjct: 983  ISSSSG---VIAAAANWHSLVVRTDGTVWGWGSNNASQLG--DGSTSDRKMPTPSSVPNG 1037

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              +  +S G  HS+AL  DG ++++G G+ G+LG G
Sbjct: 1038 --VRSISSGANHSLALRSDGTVWAWGFGNSGQLGDG 1071



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 162/321 (50%), Gaps = 36/321 (11%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+     DG   T+ +P +V +L +  +V  A+G  H LA+   G  +AWG N +GQ G+
Sbjct: 64  NTYGQLGDGTGITQRLPVRVQSLDS--VVALAVGYQHSLALRSDGTVWAWGDNFFGQLGD 121

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD 166
             + +            +P +      V  +AAG  HS+ L  +G VW WG       GD
Sbjct: 122 GSDAQSQ----------VPIQVWSLNGVVAIAAGDHHSLALLSDGSVWAWGYNAHGQLGD 171

Query: 167 IKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
              ++  +PV+VQGL  V  ++ G+ H+LA+  DG + AWG+N YGQLG G +  R  P+
Sbjct: 172 DTTVASPLPVQVQGLSGVVALSAGSTHSLAVLSDGKVKAWGDNYYGQLGDGSSTERWTPV 231

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V  L+G+    + AG +HS AL  DG V  WG    G+LG     +  + VP  V  L 
Sbjct: 232 LVSSLTGVK--SVVAGTFHSLALCSDGTVRAWGENGSGQLGISSTTR--RPVPVVVPGL- 286

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
             ++  ++ G  HS+AL  DG + ++G  DHG++G G       P++VP           
Sbjct: 287 -TNVQALAAGSAHSLALRSDGTVRAWGNNDHGQVGNGTISQQLTPVQVP----------- 334

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
           GV R    K +A GG H+LA+
Sbjct: 335 GVGRM---KSIAAGGAHSLAM 352



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 172/359 (47%), Gaps = 52/359 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG    GQLG G++ + +    V +L    V ++ AG  +SLA+  DG   
Sbjct: 102 LRSDGTVWAWGDNFFGQLGDGSDAQSQVPIQVWSLN--GVVAIAAGDHHSLALLSDGSVW 159

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T    +P QV  LS   +V  + G  H LAV   G+  AWG N YG
Sbjct: 160 AWGYNAHGQLGDDTTVASPLPVQVQGLSG--VVALSAGSTHSLAVLSDGKVKAWGDNYYG 217

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWG 159
           Q G+                   +R  P L+     V+ V AG  HS+ L  +G V  WG
Sbjct: 218 QLGDGSST---------------ERWTPVLVSSLTGVKSVVAGTFHSLALCSDGTVRAWG 262

Query: 160 QPWPPGDIKQIS-----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           +    G +   S     VPV V GL  V+ +A G+ H+LAL+ DG + AWGNN++GQ+G 
Sbjct: 263 EN-GSGQLGISSTTRRPVPVVVPGLTNVQALAAGSAHSLALRSDGTVRAWGNNDHGQVGN 321

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           G    +  P+ V G+    +  IAAGG HS A+  DG  + WG    G+L  GD   S +
Sbjct: 322 GTISQQLTPVQVPGVG--RMKSIAAGGAHSLAMRADGITWAWGDDSQGQL--GDGQSSQQ 377

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + P +V  L     + +  G  HS+AL  DG ++++G    G+LG G  +    P++VP
Sbjct: 378 LRPARV--LGQRIRMPLGTGNRHSLALHADGTVWAWGVNTAGQLGDGTDLPRTLPVQVP 434



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 168/351 (47%), Gaps = 52/351 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKV------RSVVAGSRNSLAI--------- 53
           AWG    GQLG G + ++        L P +V        +  G+R+SLA+         
Sbjct: 360 AWGDDSQGQLGDGQSSQQ--------LRPARVLGQRIRMPLGTGNRHSLALHADGTVWAW 411

Query: 54  -------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG      +P QV  L+    + A     H LA    G  +AWG N +GQ 
Sbjct: 412 GVNTAGQLGDGTDLPRTLPVQVPGLAGVHTLSATTS--HSLAARADGTVWAWGDNAFGQL 469

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-- 164
           G+        G   +R  ++P +      V  V++   HS+ ++R+G VW WG       
Sbjct: 470 GD--------GTTTQR--LLPVQVPGLAGVDTVSSMHQHSLAVSRDGTVWAWGFNGSGRL 519

Query: 165 GDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           GD   +S   PV+V GL  +  +A G+ H+LAL+ DG +WAWG+N  G LG G T  R  
Sbjct: 520 GDGTTLSRLTPVQVPGLSSMVAVAAGSTHSLALRADGTVWAWGDNSNGALGDGTTLRRLS 579

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V GLSG  +V +AAG  +S A+   G V+ WG    G+L  GD   + ++ P +   
Sbjct: 580 PVQVPGLSG--VVALAAGNGYSLAVDAQGSVWAWGYNGMGQL--GDGTTTPRVTPTQAPA 635

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           L+G  +V ++ G +HS+AL  DG  +++G  D G+LG    +    P  VP
Sbjct: 636 LSG--VVALAAGDSHSLALRADGVAWAWGGNDQGQLGDATTLERSTPAAVP 684



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 144/292 (49%), Gaps = 34/292 (11%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           Q A G  H L +   G  +AWG N YGQ G      D TG   R    +P R      V 
Sbjct: 41  QVAAGAAHSLMLRSDGTVWAWGDNTYGQLG------DGTGITQR----LPVRVQSLDSVV 90

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPW----PPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            +A G  HS+ L  +G VW WG  +      G   Q  VP++V  L  V  IA G  H+L
Sbjct: 91  ALAVGYQHSLALRSDGTVWAWGDNFFGQLGDGSDAQSQVPIQVWSLNGVVAIAAGDHHSL 150

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL  DG++WAWG N +GQLG   T     P+ VQGLSG  +V ++AG  HS A+  DG+V
Sbjct: 151 ALLSDGSVWAWGYNAHGQLGDDTTVASPLPVQVQGLSG--VVALSAGSTHSLAVLSDGKV 208

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
             WG   +G+L  GD   + +  P  V+ L G  +  V  G  HS+AL  DG + ++G  
Sbjct: 209 KAWGDNYYGQL--GDGSSTERWTPVLVSSLTG--VKSVVAGTFHSLALCSDGTVRAWGEN 264

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG     TT +P  VP+ +P   N           + +A G  H+LA+
Sbjct: 265 GSGQLGI--SSTTRRP--VPVVVPGLTN----------VQALAAGSAHSLAL 302



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 160/347 (46%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           ++ AWG    GQLG G   +R     V  L    V +V +  ++SLA+            
Sbjct: 457 TVWAWGDNAFGQLGDGTTTQRLLPVQVPGLA--GVDTVSSMHQHSLAVSRDGTVWAWGFN 514

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T +   P QV  LS+  +V  A G  H LA+   G  +AWG N  G  G+ 
Sbjct: 515 GSGRLGDGTTLSRLTPVQVPGLSS--MVAVAAGSTHSLALRADGTVWAWGDNSNGALGD- 571

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G  LRR  + P +      V  +AAG  +S+ +  +G VW WG         G
Sbjct: 572 -------GTTLRR--LSPVQVPGLSGVVALAAGNGYSLAVDAQGSVWAWGYNGMGQLGDG 622

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  P +   L  V  +A G  H+LAL+ DG  WAWG N+ GQLG   T  RS P  
Sbjct: 623 TTTPRVTPTQAPALSGVVALAAGDSHSLALRADGVAWAWGGNDQGQLGDATTLERSTPAA 682

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   +V +AAG  HS  L  DG    WG   +G+LG    D +S + P  V +   
Sbjct: 683 VPGLA--HVVALAAGNAHSLVLHADGTSSSWGNNAYGQLG----DGTSTLHPVPVQVPGP 736

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  V+ GG+HS+A+  DG ++++G    G LG G  +   +P++V
Sbjct: 737 SAMKGVAAGGSHSLAVRSDGTVWAWGNNGSGELGDGTGLQRPRPVQV 783



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 119/205 (58%), Gaps = 10/205 (4%)

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQIS--VPVRVQGLEQVKLIAV 187
           P L   QVAAG  HS++L  +G VW WG       GD   I+  +PVRVQ L+ V  +AV
Sbjct: 35  PPLGHEQVAAGAAHSLMLRSDGTVWAWGDNTYGQLGDGTGITQRLPVRVQSLDSVVALAV 94

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H+LAL+ DG +WAWG+N +GQLG G       PI V  L+G  +V IAAG  HS AL
Sbjct: 95  GYQHSLALRSDGTVWAWGDNFFGQLGDGSDAQSQVPIQVWSLNG--VVAIAAGDHHSLAL 152

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V+ WG   HG+L  GD+   +  +P +V  L+G  +V +S G THS+A+  DG +
Sbjct: 153 LSDGSVWAWGYNAHGQL--GDDTTVASPLPVQVQGLSG--VVALSAGSTHSLAVLSDGKV 208

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEV 332
            ++G   +G+LG G       P+ V
Sbjct: 209 KAWGDNYYGQLGDGSSTERWTPVLV 233



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 176/385 (45%), Gaps = 54/385 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWG    GQLG G    +     V++L+   V ++  G ++SLA+       
Sbjct: 52  LRSDGTVWAWGDNTYGQLGDGTGITQRLPVRVQSLD--SVVALAVGYQHSLALRSDGTVW 109

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG      +P QV +L+   +V  A G  H LA+   G  +AWG N +G
Sbjct: 110 AWGDNFFGQLGDGSDAQSQVPIQVWSLNG--VVAIAAGDHHSLALLSDGSVWAWGYNAHG 167

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G++                +P +      V  ++AG THS+ +  +G V  WG  +  
Sbjct: 168 QLGDDTTVASP----------LPVQVQGLSGVVALSAGSTHSLAVLSDGKVKAWGDNYYG 217

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   +   PV V  L  VK +  G FH+LAL  DG + AWG N  GQLG   T  R
Sbjct: 218 QLGDGSSTERWTPVLVSSLTGVKSVVAGTFHSLALCSDGTVRAWGENGSGQLGISSTTRR 277

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V GL+ +    +AAG  HS AL  DG V  WG  +HG++G G    S ++ P +V
Sbjct: 278 PVPVVVPGLTNVQA--LAAGSAHSLALRSDGTVRAWGNNDHGQVGNG--TISQQLTPVQV 333

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             +    +  ++ GG HS+A+  DG  +++G    G+LG G+     +P  V        
Sbjct: 334 PGVG--RMKSIAAGGAHSLAMRADGITWAWGDDSQGQLGDGQSSQQLRPARV-------- 383

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
                + +R I   +  G RH+LA+
Sbjct: 384 -----LGQR-IRMPLGTGNRHSLAL 402



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 175/404 (43%), Gaps = 92/404 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  S+ AWG    GQLG            V+ L    V ++ AGS +SLA+  DGK K
Sbjct: 152 LLSDGSVWAWGYNAHGQLGDDTTVASPLPVQVQGLS--GVVALSAGSTHSLAVLSDGKVK 209

Query: 61  ---------------TEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          TE   P  V++L+  K V A  G +H LA+   G   AWG N  G
Sbjct: 210 AWGDNYYGQLGDGSSTERWTPVLVSSLTGVKSVVA--GTFHSLALCSDGTVRAWGENGSG 267

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           Q G             RR + +     P L  V+ +AAG  HS+ L  +G V  WG    
Sbjct: 268 QLGIS--------STTRRPVPV---VVPGLTNVQALAAGSAHSLALRSDGTVRAWGNNDH 316

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ- 218
                G I Q   PV+V G+ ++K IA G  H+LA++ DG  WAWG++  GQLG G +  
Sbjct: 317 GQVGNGTISQQLTPVQVPGVGRMKSIAAGGAHSLAMRADGITWAWGDDSQGQLGDGQSSQ 376

Query: 219 -------------------------------------------------PRSQPIPVQGL 229
                                                            PR+ P+ V GL
Sbjct: 377 QLRPARVLGQRIRMPLGTGNRHSLALHADGTVWAWGVNTAGQLGDGTDLPRTLPVQVPGL 436

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G+  +       HS A   DG V+ WG    G+L  GD   + +++P +V  LAG D  
Sbjct: 437 AGVHTLSATTS--HSLAARADGTVWAWGDNAFGQL--GDGTTTQRLLPVQVPGLAGVDT- 491

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            VS    HS+A++RDG ++++G    GRLG G  ++   P++VP
Sbjct: 492 -VSSMHQHSLAVSRDGTVWAWGFNGSGRLGDGTTLSRLTPVQVP 534



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 111/249 (44%), Gaps = 35/249 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            + S  ++ AWG    GQLG   + +R     V  L    V S+ AG+ +SLA+  DG   
Sbjct: 852  LRSDGTVWAWGYNFYGQLGDATSTQRLVPIQVPGLT--GVVSIAAGTHHSLAVRSDGTVW 909

Query: 59   -------------TKTE-NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         TK + + P QV  L+   +V  A G +H LAV   G  +AWG N +G
Sbjct: 910  AWGYNFYGQLGDGTKIQRSPPVQVPGLAG--MVSVAAGTYHSLAVHSNGTVWAWGYNNHG 967

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
            Q G+        G   +R + +P   +  +I    AA   HS+V+  +G VW WG     
Sbjct: 968  QLGD--------GTTTQRLLPVPISSSSGVIA---AAANWHSLVVRTDGTVWGWGSNNAS 1016

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                G      +P        V+ I+ GA H+LAL+ DG +WAWG    GQLG G    R
Sbjct: 1017 QLGDGSTSDRKMPTPSSVPNGVRSISSGANHSLALRSDGTVWAWGFGNSGQLGDGVMSMR 1076

Query: 221  SQPIPVQGL 229
              P  V G 
Sbjct: 1077 LVPAGVSGF 1085


>gi|444914429|ref|ZP_21234572.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444714661|gb|ELW55540.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 648

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 163/339 (48%), Gaps = 40/339 (11%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----- 57
           S  ++ AWG+   GQLG G  ++ +    V+ L   +V +V AG  +S+A+C DG     
Sbjct: 316 SDGTLWAWGANYYGQLGDGTRKDHDTPKRVQGLS--RVVAVAAGDGHSIALCADGTVWTW 373

Query: 58  -----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T    +P  V  LS   +V  A G  H LAV   G  +AWG N  GQ 
Sbjct: 374 GYNHDGQLAHGSTNDSPVPLHVRELSG--VVAVAAGALHSLAVLSDGSVWAWGYNRQGQL 431

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G+                  P R      V  V+AG  HS+    +G VW WG       
Sbjct: 432 GDGSLSSSAE----------PVRVQGLSGVAAVSAGLNHSLARGTDGGVWAWGGNSFGQL 481

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G      VPVRV+GL  V+ I+ G  H+LA   DG LWAWG N  GQLG G T   S 
Sbjct: 482 GEGTTSNALVPVRVRGLSGVETISAGFNHSLARASDGGLWAWGGNYTGQLGDGTTSNSSV 541

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ VQGLSG+  V   AG  HS A+  DG V+ WG    G+LG G  + S    P +V  
Sbjct: 542 PVRVQGLSGVAAV--FAGLNHSLAVRTDGSVWAWGINSFGQLGEGTTNTS--FAPVRVQG 597

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           L+G +   V+ G  HS+++  DG ++S+G   HG+LG+G
Sbjct: 598 LSGMET--VAAGSLHSLSVGSDGSMWSWGNNHHGQLGHG 634



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 168/354 (47%), Gaps = 41/354 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  S+ AWG     QLG G    + +    +  +  +V +V AG  +SLA+  DG   
Sbjct: 111 LRSDGSVWAWGDNNSDQLG-GAPGAQSYSVPWRLEDLSEVVAVAAGGNHSLAVRADGTVW 169

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNE 102
                            T  +P QV  LS    V AA  GW H +     G  +AWG N 
Sbjct: 170 AWGDNFAGQLGDGNILTTRWLPKQVQGLSG---VVAASAGWAHSMVALSDGSVWAWGNNT 226

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            GQ G           I      +P++      V  VAAGG +S+ L  +G +W WG   
Sbjct: 227 SGQLGNG---------ISVGYGALPEQVQGLRGVMAVAAGGLYSLALRSDGTLWAWGSND 277

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                 G    +S  VRV+ L  V  +A G+ H+LA++ DG LWAWG N YGQLG G  +
Sbjct: 278 HGQRGDGSTVYLSSSVRVRWLSGVVAMAAGSAHSLAVRSDGTLWAWGANYYGQLGDGTRK 337

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
               P  VQGLS   +V +AAG  HS AL  DG V+ WG    G+L  G  + S   VP 
Sbjct: 338 DHDTPKRVQGLS--RVVAVAAGDGHSIALCADGTVWTWGYNHDGQLAHGSTNDSP--VPL 393

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            V  L+G  +V V+ G  HS+A+  DG ++++G    G+LG G   ++ +P+ V
Sbjct: 394 HVRELSG--VVAVAAGALHSLAVLSDGSVWAWGYNRQGQLGDGSLSSSAEPVRV 445



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 165/352 (46%), Gaps = 40/352 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWGS + GQ G G+         V+ L    V ++ AGS +SLA+       
Sbjct: 264 LRSDGTLWAWGSNDHGQRGDGSTVYLSSSVRVRWLS--GVVAMAAGSAHSLAVRSDGTLW 321

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG  K  + P +V  LS  ++V  A G  H +A+   G  + WG N  G
Sbjct: 322 AWGANYYGQLGDGTRKDHDTPKRVQGLS--RVVAVAAGDGHSIALCADGTVWTWGYNHDG 379

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q                 D  +P        V  VAAG  HS+ +  +G VW WG     
Sbjct: 380 QLAHGSTN----------DSPVPLHVRELSGVVAVAAGALHSLAVLSDGSVWAWGYNRQG 429

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G +   + PVRVQGL  V  ++ G  H+LA   DG +WAWG N +GQLG G T   
Sbjct: 430 QLGDGSLSSSAEPVRVQGLSGVAAVSAGLNHSLARGTDGGVWAWGGNSFGQLGEGTTSNA 489

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V+GLSG+    I+AG  HS A   DG ++ WG    G+LG G    SS  VP +V
Sbjct: 490 LVPVRVRGLSGVE--TISAGFNHSLARASDGGLWAWGGNYTGQLGDGTTSNSS--VPVRV 545

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             L+G  +  V  G  HS+A+  DG ++++G    G+LG G   T+  P+ V
Sbjct: 546 QGLSG--VAAVFAGLNHSLAVRTDGSVWAWGINSFGQLGEGTTNTSFAPVRV 595



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/327 (33%), Positives = 157/327 (48%), Gaps = 45/327 (13%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+L    DG + + + P +V  LS    V A  G  H LA+   G  +AWG N  GQ G+
Sbjct: 23  NALGQLGDGSSDSHSEPVRVRGLSGVVAVSAGEG--HSLALHRDGTVWAWGDNALGQLGD 80

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------W 162
                             P R      V  V+AG  HS+ L  +G VW WG         
Sbjct: 81  GTSDSHSE----------PVRVPGLSGVVAVSAGDNHSLALRSDGSVWAWGDNNSDQLGG 130

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRS 221
            PG  +  SVP R++ L +V  +A G  H+LA++ DG +WAWG+N  GQLG G+    R 
Sbjct: 131 APG-AQSYSVPWRLEDLSEVVAVAAGGNHSLAVRADGTVWAWGDNFAGQLGDGNILTTRW 189

Query: 222 QPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  VQGLSG+     A+ GW HS     DG V+ WG    G+LG G +     + P++V
Sbjct: 190 LPKQVQGLSGVV---AASAGWAHSMVALSDGSVWAWGNNTSGQLGNGISVGYGAL-PEQV 245

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L G  ++ V+ GG +S+AL  DG ++++G  DHG+ G G  V     + V        
Sbjct: 246 QGLRG--VMAVAAGGLYSLALRSDGTLWAWGSNDHGQRGDGSTVYLSSSVRV-------- 295

Query: 341 NAGDGVDRRWIAKLV--ACGGRHTLAI 365
                   RW++ +V  A G  H+LA+
Sbjct: 296 --------RWLSGVVAMAAGSAHSLAV 314



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 171/355 (48%), Gaps = 53/355 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAI------ 53
           ++ AWG    GQLG G+++           EP +VR      +V AG  +SLA+      
Sbjct: 16  TVWAWGGNALGQLGDGSSDSHS--------EPVRVRGLSGVVAVSAGEGHSLALHRDGTV 67

Query: 54  ----------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                       DG + + + P +V  LS   +V  + G  H LA+   G  +AWG N  
Sbjct: 68  WAWGDNALGQLGDGTSDSHSEPVRVPGLSG--VVAVSAGDNHSLALRSDGSVWAWGDNNS 125

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            Q G  P  +  +         +P R      V  VAAGG HS+ +  +G VW WG  + 
Sbjct: 126 DQLGGAPGAQSYS---------VPWRLEDLSEVVAVAAGGNHSLAVRADGTVWAWGDNFA 176

Query: 164 P--GDIKQIS---VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DT 217
              GD   ++   +P +VQGL  V   + G  H++    DG++WAWGNN  GQLG G   
Sbjct: 177 GQLGDGNILTTRWLPKQVQGLSGVVAASAGWAHSMVALSDGSVWAWGNNTSGQLGNGISV 236

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              + P  VQGL G  ++ +AAGG +S AL  DG ++ WG  +HG+ G G     S  V 
Sbjct: 237 GYGALPEQVQGLRG--VMAVAAGGLYSLALRSDGTLWAWGSNDHGQRGDGSTVYLSSSV- 293

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +V  L+G  +V ++ G  HS+A+  DG ++++G   +G+LG G +     P  V
Sbjct: 294 -RVRWLSG--VVAMAAGSAHSLAVRSDGTLWAWGANYYGQLGDGTRKDHDTPKRV 345



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 139/286 (48%), Gaps = 33/286 (11%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G  +AWGGN  GQ G+                  P R      V  V+AG  
Sbjct: 7   HSLALRHDGTVWAWGGNALGQLGDGSSDSHSE----------PVRVRGLSGVVAVSAGEG 56

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
           HS+ L R+G VW WG         G     S PVRV GL  V  ++ G  H+LAL+ DG+
Sbjct: 57  HSLALHRDGTVWAWGDNALGQLGDGTSDSHSEPVRVPGLSGVVAVSAGDNHSLALRSDGS 116

Query: 201 LWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           +WAWG+N   QLG     Q  S P  ++ LS   +V +AAGG HS A+  DG V+ WG  
Sbjct: 117 VWAWGDNNSDQLGGAPGAQSYSVPWRLEDLS--EVVAVAAGGNHSLAVRADGTVWAWGDN 174

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             G+LG G N  +++ +P++V  L+G  +V  S G  HS+    DG ++++G    G+LG
Sbjct: 175 FAGQLGDG-NILTTRWLPKQVQGLSG--VVAASAGWAHSMVALSDGSVWAWGNNTSGQLG 231

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G  V  G    +P  +   R              VA GG ++LA+
Sbjct: 232 NGISVGYG---ALPEQVQGLRG----------VMAVAAGGLYSLAL 264



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 110/192 (57%), Gaps = 9/192 (4%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           +AAG  HS+ L  +G VW WG         G     S PVRV+GL  V  ++ G  H+LA
Sbjct: 1   MAAGTDHSLALRHDGTVWAWGGNALGQLGDGSSDSHSEPVRVRGLSGVVAVSAGEGHSLA 60

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  DG +WAWG+N  GQLG G +   S+P+ V GLSG  +V ++AG  HS AL  DG V+
Sbjct: 61  LHRDGTVWAWGDNALGQLGDGTSDSHSEPVRVPGLSG--VVAVSAGDNHSLALRSDGSVW 118

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG     +LG G     S  VP ++  L+  ++V V+ GG HS+A+  DG ++++G   
Sbjct: 119 AWGDNNSDQLG-GAPGAQSYSVPWRLEDLS--EVVAVAAGGNHSLAVRADGTVWAWGDNF 175

Query: 315 HGRLGYGRKVTT 326
            G+LG G  +TT
Sbjct: 176 AGQLGDGNILTT 187



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 4/97 (4%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAG  HS AL  DG V+ WG    G+LG G +D  S+  P +V  L+G  +V VS G  
Sbjct: 1   MAAGTDHSLALRHDGTVWAWGGNALGQLGDGSSDSHSE--PVRVRGLSG--VVAVSAGEG 56

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           HS+AL RDG ++++G    G+LG G   +  +P+ VP
Sbjct: 57  HSLALHRDGTVWAWGDNALGQLGDGTSDSHSEPVRVP 93


>gi|432856462|ref|XP_004068433.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Oryzias latipes]
          Length = 4777

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3896 TIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3955

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3956 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4015

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++             + V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4016 HGNRSPCDRPRVIES--------LRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLG 4067

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V  L+  ++I V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4068 HGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGDYGKLGRGGSDG 4127

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4128 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4185

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4186 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4241

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4242 Q--GKKINR------VACGSAHTLA---WSTSK 4263



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 168/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2943 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYA--------CGEATNGRLGLG-LSSG 2993

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             I IP++ +     +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 2994 TIQIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3053

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L++WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3054 LIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGH 3113

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3114 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3171

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3172 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQIV-----------EGLRGKK 3220

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3221 IVH-VAVGALHCLAVTD 3236



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 152/309 (49%), Gaps = 44/309 (14%)

Query: 33  KALEPYKVRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGW 84
           KAL    V  +V   +  L +   G   T+N       P  ++ LS+ KIV+ A    G 
Sbjct: 397 KALSSTGVTQIVCSEKVFLILSRSGAVYTQNYKSTTLAPMLIHGLSSRKIVKLAAHPDGQ 456

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI--------- 135
           H LA+   G  Y+WG      CG       D GR+   D    +   P LI         
Sbjct: 457 HFLALSTSGEVYSWG------CG-------DGGRLGHGDATYLEE--PALITTFSGKQTG 501

Query: 136 --VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV-- 187
             V Q+A G T+S  +T +G ++TWG+        G  + ++ P+ V  L+  K++ V  
Sbjct: 502 KQVVQIACGSTYSAAVTADGELYTWGRGNYGRLGHGSSEDVTTPMLVTALKGQKVVDVAC 561

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G    LA+ E+G +W+WG+ +YG+LG G +     P  V+ L  L +V +  G   S 
Sbjct: 562 GSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLVEKLQDLDIVKVCCGSQFSV 621

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALT DG+VY WG+G++ RLG G ++      P+ ++ L G+ +V ++ G TH +ALT +G
Sbjct: 622 ALTKDGQVYTWGKGDNQRLGHGTDEHVR--YPKLLDSLQGKKVVDIAVGSTHCLALTDEG 679

Query: 306 HIFSFGRGD 314
            + S+G  D
Sbjct: 680 EVHSWGSND 688



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 157/334 (47%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            I A G   +G+LG+G +     +   + AL  Y V+ V   +G R+++A+  DGK  +  
Sbjct: 2975 IYACGEATNGRLGLGLSSGTIQIPRQISALSNYVVKKVAVHSGGRHAMALTVDGKVFSWG 3034

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y+WG  EYG+ G
Sbjct: 3035 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLG 3094

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PKL+       V QVA G     ++ LT EG V++W
Sbjct: 3095 ----HGDNTTQL-----------RPKLVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 3139

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 3140 GD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3195

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 3196 YFRLGHGTDVHVRKPQIVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGT 3255

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3256 TTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3287



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 111/201 (55%), Gaps = 14/201 (6%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL------EQV 182
           K++       G H + L+  G V++WG         GD   +  P  +         +QV
Sbjct: 445 KIVKLAAHPDGQHFLALSTSGEVYSWGCGDGGRLGHGDATYLEEPALITTFSGKQTGKQV 504

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG- 241
             IA G+ ++ A+  DG L+ WG   YG+LG G ++  + P+ V  L G  +VD+A G  
Sbjct: 505 VQIACGSTYSAAVTADGELYTWGRGNYGRLGHGSSEDVTTPMLVTALKGQKVVDVACGSG 564

Query: 242 -WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              + A+T++G+V+ WG G++G+LG G +D      P+ V  L   DIV+V CG   SVA
Sbjct: 565 DAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLVEKLQDLDIVKVCCGSQFSVA 622

Query: 301 LTRDGHIFSFGRGDHGRLGYG 321
           LT+DG ++++G+GD+ RLG+G
Sbjct: 623 LTKDGQVYTWGKGDNQRLGHG 643



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 123/270 (45%), Gaps = 32/270 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G+  
Sbjct: 3997 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELF 4056

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V+AL   +++  A G      L + D    ++WG  +
Sbjct: 4057 TWGKGRYGRLGHGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGD 4116

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 4117 YGKLGR--GGSDGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 4168

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 4169 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 4228

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            T    +P  V  L G  +  +A G  H+ A
Sbjct: 4229 TNAIQRPRLVAALQGKKINRVACGSAHTLA 4258



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 223 PIPVQGLSGLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKMVPQ 278
           P+ + GLS   +V +AA   G H  AL+  GEVY WG G+ GRLG GD    +   ++  
Sbjct: 435 PMLIHGLSSRKIVKLAAHPDGQHFLALSTSGEVYSWGCGDGGRLGHGDATYLEEPALITT 494

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                 G+ +VQ++CG T+S A+T DG ++++GRG++GRLG+G       PM V
Sbjct: 495 FSGKQTGKQVVQIACGSTYSAAVTADGELYTWGRGNYGRLGHGSSEDVTTPMLV 548



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALE----PYKVRSVVAGSRNSLAICDD 56
           ++++  + +WG G+ G+LG G+    E   ++          +V  +  GS  S A+  D
Sbjct: 461 LSTSGEVYSWGCGDGGRLGHGDATYLEEPALITTFSGKQTGKQVVQIACGSTYSAAVTAD 520

Query: 57  GKTKT--------------ENI--PSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T              E++  P  V AL   K+V  A G      LAV + G+ ++W
Sbjct: 521 GELYTWGRGNYGRLGHGSSEDVTTPMLVTALKGQKVVDVACGSGDAQTLAVTENGQVWSW 580

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   SV LT++G V+TW
Sbjct: 581 GDGDYGKLGRGGSDGCKTPKLVEK--------LQDLDIVKVCCGSQFSVALTKDGQVYTW 632

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  +  L+  K+  IAVG+ H LAL ++G + +WG+N+  Q 
Sbjct: 633 GKGDNQRLGHGTDEHVRYPKLLDSLQGKKVVDIAVGSTHCLALTDEGEVHSWGSNDKLQH 692

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + QP  + GL+   +V I+ G   S A
Sbjct: 693 FDTLFPNKKQPKALPGLNSKHIVGISCGPGQSFA 726



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3895 GTIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3954

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3955 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4014

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 4015 GHGNRSPCDR--PRVIESLRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLGHG 4069



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  + +WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3076 ITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGL 3135

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3136 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3195

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  ++      K++   VA G  H + +T  G V+ WG   
Sbjct: 3196 YFRLGH------GTDVHVRKPQIVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3247

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3248 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3285


>gi|350405799|ref|XP_003487554.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Bombus impatiens]
          Length = 5118

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 190/401 (47%), Gaps = 65/401 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +   + ++L   +   +  G +  LA+  DGK       
Sbjct: 4260 AIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLLAVTADGKVYATGYG 4319

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  + + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 4320 AAGRLGIGGTDSVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 4379

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                     G  L  D        PKLI       +  +A GG HS  +T  G ++TWG+
Sbjct: 4380 H--------GNRLMYD-------RPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGK 4424

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  V+ L+  K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 4425 GRYGRLGHGDSEDQLTPKLVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKL 4484

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P+ ++ L+GL ++ +  G   S ALT  G +Y WG+G++ RLG G +D  
Sbjct: 4485 GRGGSDGCKIPMKIESLAGLGVIKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHV 4544

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA T  G +F++G  D G+LG G    T   ++ 
Sbjct: 4545 RR--PRKVAALQGKKIISIATGSLHCVACTDKGEVFTWGDNDEGQLGDG----TTSALQR 4598

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            P  + A +  G  + R      VACG  HTLA   W T ++
Sbjct: 4599 PRLVHALQ--GKKITR------VACGSAHTLA---WSTMKA 4628



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 160/321 (49%), Gaps = 46/321 (14%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K +  A G      V  +G+ YA G    G+ G      DD+       
Sbjct: 3277 LPVYSEVLSKLKPIHIAGGSKTLFVVSQEGKLYACGEGTNGRLG----LGDDSNV----- 3327

Query: 124  IVIPQRCAPKLI-------VRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
                  C PKLI       +++VA  +GG H++ LT++G +++WG+        G+   +
Sbjct: 3328 ------CEPKLIPFLSQYMIKKVAVHSGGKHALALTQDGKIFSWGEGEDGKLGHGNSVSL 3381

Query: 171  SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              P  ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GDT  + +P  VQ 
Sbjct: 3382 DKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGHGDTATQMKPKLVQS 3441

Query: 229  LSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            L G  ++ +A G     + ALT DG VY WG G+ G+LG G +D      P  ++ L G 
Sbjct: 3442 LVGQRVIQVACGSRDAQTMALTADGSVYSWGDGDFGKLGRGGSDGC--YTPLLIDRLNGL 3499

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
             +VQ+ CG   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+
Sbjct: 3500 GVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGL 3548

Query: 347  DRRWIAKLVACGGRHTLAIVE 367
              + +   VA G  H LA+ +
Sbjct: 3549 RGKKVVH-VAVGALHCLAVTD 3568



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 163/332 (49%), Gaps = 38/332 (11%)

Query: 51   LAICDDGKTKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEYGQCGE 108
            L I    K    ++ + V+ L S+ +IVQ  +   H      Q  A Y WG N+      
Sbjct: 3210 LQIIGKRKMFENHLATSVSFLASDWEIVQEQMNLQHGSEPPPQHSAVYVWGLND------ 3263

Query: 109  EPERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
                KD  G +    I +P       KL    +A G     V+++EG ++  G+      
Sbjct: 3264 ----KDQLGGLKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFVVSQEGKLYACGEGTNGRL 3319

Query: 163  PPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD   +  P  +  L Q  +K +AV  G  H LAL +DG +++WG  E G+LG G++ 
Sbjct: 3320 GLGDDSNVCEPKLIPFLSQYMIKKVAVHSGGKHALALTQDGKIFSWGEGEDGKLGHGNSV 3379

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
               +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+GRLG GD   +++M P+
Sbjct: 3380 SLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGHGDT--ATQMKPK 3437

Query: 279  KVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
             V  L G+ ++QV+CG     ++ALT DG ++S+G GD G+LG G       P+ +    
Sbjct: 3438 LVQSLVGQRVIQVACGSRDAQTMALTADGSVYSWGDGDFGKLGRGGSDGCYTPLLI---- 3493

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               R  G GV +      + CG + +LA+ ++
Sbjct: 3494 --DRLNGLGVVQ------IECGAQFSLALTKY 3517



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 158/328 (48%), Gaps = 52/328 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGK------ 58
            + A G G +G+LG+G++       ++  L  Y ++ V   +G +++LA+  DGK      
Sbjct: 3308 LYACGEGTNGRLGLGDDSNVCEPKLIPFLSQYMIKKVAVHSGGKHALALTQDGKIFSWGE 3367

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      + + + P  + +L + +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3368 GEDGKLGHGNSVSLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGH 3427

Query: 109  EPERKDDTGRILRRDIV---IPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWP 163
                  DT   ++  +V   + QR      V QVA G     ++ LT +G V++WG    
Sbjct: 3428 -----GDTATQMKPKLVQSLVGQR------VIQVACGSRDAQTMALTADGSVYSWGD--- 3473

Query: 164  PGDIKQI--------SVPV---RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  ++          P+   R+ GL  V+ I  GA  +LAL + G +W WG  +Y +L
Sbjct: 3474 -GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQ-IECGAQFSLALTKYGEVWTWGKGDYFRL 3531

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G+     +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G    +
Sbjct: 3532 GHGNDHHVRKPTLVEGLRGKKVVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGSTIVN 3591

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             K  P  V+ L    + +VSCG +HS+A
Sbjct: 3592 KK--PSLVHELDDARVNRVSCGSSHSIA 3617



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 62/312 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 4361 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------L 4384

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
              + P  +  L  T+IV  A GG H  A+   G  Y WG   YG+ G        T +++
Sbjct: 4385 MYDRPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSEDQLTPKLV 4444

Query: 121  R--RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI-------- 170
               +D         K+I     +G   ++ +T + +VW+WG     GD  ++        
Sbjct: 4445 EALQDY--------KVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGC 4492

Query: 171  SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             +P++++ L  + +I V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  
Sbjct: 4493 KIPMKIESLAGLGVIKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHVRRPRKVAA 4552

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L G  ++ IA G  H  A TD GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I
Sbjct: 4553 LQGKKIISIATGSLHCVACTDKGEVFTWGDNDEGQL--GDGTTSALQRPRLVHALQGKKI 4610

Query: 289  VQVSCGGTHSVA 300
             +V+CG  H++A
Sbjct: 4611 TRVACGSAHTLA 4622



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 34/286 (11%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD 115
           P +V   S   +   A    G H LA+      Y+WG  + G+ G       +EP+  + 
Sbjct: 486 PQRVYGFSEKPVTMIASHSDGTHYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVE- 544

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              ++ ++I              +A G T+S VL+  G ++TWG+        G+   + 
Sbjct: 545 --ALVDKNITF------------IACGSTYSAVLSSNGELYTWGRGNYGRLGHGNSDNVL 590

Query: 172 VPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +P  V  L    V  +A G+     L +   G +++WG+  YG+LG G       P  V 
Sbjct: 591 IPTLVTALNGHMVVYVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGCDGSKTPKIVD 650

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L  + +  +  GG  S ALT  GEVY WG+GE  RLG G+ +      P+ + +L  + 
Sbjct: 651 KLLDINVAKVYCGGQFSAALTAYGEVYTWGKGEGYRLGHGNEEHIR--YPKVIEVLKPKK 708

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + ++  G  H +ALT D  ++ +GR D+G++         +P   P
Sbjct: 709 VKELCVGNFHVLALTEDQLVYGWGRNDYGQIDPALGTIVPEPTLCP 754



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 22/237 (9%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           + GTH + LT++  V++WG         GD      P  V+ L  + +  IA G+ ++  
Sbjct: 504 SDGTHYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVEALVDKNITFIACGSTYSAV 563

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL--TDDGE 252
           L  +G L+ WG   YG+LG G++     P  V  L+G  +V +A G   S  L  T  G 
Sbjct: 564 LSSNGELYTWGRGNYGRLGHGNSDNVLIPTLVTALNGHMVVYVACGSGDSQTLCVTASGI 623

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG G +G+LG G  D S    P+ V+ L   ++ +V CGG  S ALT  G ++++G+
Sbjct: 624 VFSWGDGNYGKLGRGGCDGSK--TPKIVDKLLDINVAKVYCGGQFSAALTAYGEVYTWGK 681

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           G+  RLG+G +     P  + +  P               K +  G  H LA+ E Q
Sbjct: 682 GEGYRLGHGNEEHIRYPKVIEVLKPKK------------VKELCVGNFHVLALTEDQ 726



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 18/194 (9%)

Query: 136 VRQVAAGGTHSVVLTREGHVWT--WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF--- 190
           ++Q+       ++L+  G+V+   +G         +   P RV G  +  +  + +    
Sbjct: 455 IKQLCCTERALMILSISGNVYMMYYGS--------ETQYPQRVYGFSEKPVTMIASHSDG 506

Query: 191 -HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H LAL +D ++++WGN + G+LG GD     +P  V+ L    +  IA G  +S  L+ 
Sbjct: 507 THYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVEALVDKNITFIACGSTYSAVLSS 566

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHI 307
           +GE+Y WGRG +GRLG G++D  + ++P  V  L G  +V V+CG   + ++ +T  G +
Sbjct: 567 NGELYTWGRGNYGRLGHGNSD--NVLIPTLVTALNGHMVVYVACGSGDSQTLCVTASGIV 624

Query: 308 FSFGRGDHGRLGYG 321
           FS+G G++G+LG G
Sbjct: 625 FSWGDGNYGKLGRG 638



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P+  + LS L  V +  G     A+T DG+VY  G 
Sbjct: 4259 GAIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLLAVTADGKVYATGY 4318

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S MVP  +  +    +  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 4319 GAAGRLGIGGTD--SVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 4376

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G ++   +P  +   +       + VD       +ACGG H+ AI
Sbjct: 4377 KLGHGNRLMYDRPKLIEELL-----GTEIVD-------IACGGHHSAAI 4413



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 122/270 (45%), Gaps = 32/270 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +   +S+ +WG+G+ G+LG G+    +   +V+AL    +  +  GS  S  +  +G+  
Sbjct: 512 LTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVEALVDKNITFIACGSTYSAVLSSNGELY 571

Query: 61  T--------------EN--IPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T              +N  IP+ V AL+   +V  A G      L V   G  ++WG   
Sbjct: 572 TWGRGNYGRLGHGNSDNVLIPTLVTALNGHMVVYVACGSGDSQTLCVTASGIVFSWGDGN 631

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YG+ G        T +I+ + + I         V +V  GG  S  LT  G V+TWG+  
Sbjct: 632 YGKLGRGGCDGSKTPKIVDKLLDIN--------VAKVYCGGQFSAALTAYGEVYTWGKGE 683

Query: 161 --PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G+ + I  P  ++ L  ++VK + VG FH LAL ED  ++ WG N+YGQ+    
Sbjct: 684 GYRLGHGNEEHIRYPKVIEVLKPKKVKELCVGNFHVLALTEDQLVYGWGRNDYGQIDPAL 743

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                +P     LSG  ++ +A G   S A
Sbjct: 744 GTIVPEPTLCPTLSGKNIIGLACGLTQSFA 773



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 50/257 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+   +    +V++L   +V  V  GSR++          
Sbjct: 3408 ITSSGELYTWGLGEYGRLGHGDTATQMKPKLVQSLVGQRVIQVACGSRDA---------- 3457

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      +A+   G  Y+WG  ++G+ G        T  ++
Sbjct: 3458 ------------------------QTMALTADGSVYSWGDGDFGKLGRGGSDGCYTPLLI 3493

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V Q+  G   S+ LT+ G VWTWG+        G+   +  P  V
Sbjct: 3494 DR--------LNGLGVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV 3545

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL  ++V  +AVGA H LA+ + G ++AWG+N++GQ G G T    +P  V  L    +
Sbjct: 3546 EGLRGKKVVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGSTIVNKKPSLVHELDDARV 3605

Query: 235  VDIAAGGWHSTA--LTD 249
              ++ G  HS A  LTD
Sbjct: 3606 NRVSCGSSHSIAWVLTD 3622



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 272 SSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           S    PQ+V   + + +  ++    GTH +ALT+D  ++S+G GD GRLG+G +V   +P
Sbjct: 481 SETQYPQRVYGFSEKPVTMIASHSDGTHYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEP 540

Query: 330 MEV 332
             V
Sbjct: 541 KLV 543


>gi|340711630|ref|XP_003394376.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
            HERC2-like [Bombus terrestris]
          Length = 5151

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 190/401 (47%), Gaps = 65/401 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +   + ++L   +   +  G +  LA+  DGK       
Sbjct: 4293 AIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLLAVTADGKVYATGYG 4352

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  + + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 4353 AAGRLGIGGTDSVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 4412

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                     G  L  D        PKLI       +  +A GG HS  +T  G ++TWG+
Sbjct: 4413 H--------GNRLMYD-------RPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGK 4457

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  V+ L+  K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 4458 GRYGRLGHGDSEDQLTPKLVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKL 4517

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P+ ++ L+GL ++ +  G   S ALT  G +Y WG+G++ RLG G +D  
Sbjct: 4518 GRGGSDGCKIPMKIESLAGLGVIKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHV 4577

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA T  G +F++G  D G+LG G    T   ++ 
Sbjct: 4578 RR--PRKVAALQGKKIISIATGSLHCVACTDKGEVFTWGDNDEGQLGDG----TTSALQR 4631

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            P  + A +  G  + R      VACG  HTLA   W T ++
Sbjct: 4632 PRLVHALQ--GKKITR------VACGSAHTLA---WSTMKA 4661



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 160/321 (49%), Gaps = 46/321 (14%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K +  A G      V  +G+ YA G    G+ G      DD+       
Sbjct: 3282 LPVYSEVLSKLKPIHIAGGSKTLFVVSQEGKLYACGEGTNGRLG----LGDDSNV----- 3332

Query: 124  IVIPQRCAPKLI-------VRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
                  C PKLI       ++++A  +GG H++ LT++G +++WG+        G+   +
Sbjct: 3333 ------CEPKLIPFLSQYMIKKMAVHSGGKHALALTQDGKIFSWGEGEDGKLGHGNSVSL 3386

Query: 171  SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              P  ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GDT  + +P  VQ 
Sbjct: 3387 DKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGHGDTATQMKPKLVQS 3446

Query: 229  LSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            L G  ++ +A G     + ALT DG VY WG G+ G+LG G +D      P  ++ L G 
Sbjct: 3447 LVGQRVIQVACGSRDAQTMALTADGSVYSWGDGDFGKLGRGGSDGC--YTPLLIDRLNGL 3504

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
             +VQ+ CG   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+
Sbjct: 3505 GVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGL 3553

Query: 347  DRRWIAKLVACGGRHTLAIVE 367
              + +   VA G  H LA+ +
Sbjct: 3554 RGKKVVH-VAVGALHCLAVTD 3573



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 163/332 (49%), Gaps = 38/332 (11%)

Query: 51   LAICDDGKTKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEYGQCGE 108
            L I    K    ++ + V+ L S+ +IVQ  +   H      Q  A Y WG N+      
Sbjct: 3215 LQIIGKRKMFENHLATSVSFLASDWEIVQEQMNLQHGSEPPPQHSAVYVWGLND------ 3268

Query: 109  EPERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
                KD  G +    I +P       KL    +A G     V+++EG ++  G+      
Sbjct: 3269 ----KDQLGGLKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFVVSQEGKLYACGEGTNGRL 3324

Query: 163  PPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD   +  P  +  L Q  +K +AV  G  H LAL +DG +++WG  E G+LG G++ 
Sbjct: 3325 GLGDDSNVCEPKLIPFLSQYMIKKMAVHSGGKHALALTQDGKIFSWGEGEDGKLGHGNSV 3384

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
               +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+GRLG GD   +++M P+
Sbjct: 3385 SLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGHGDT--ATQMKPK 3442

Query: 279  KVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
             V  L G+ ++QV+CG     ++ALT DG ++S+G GD G+LG G       P+ +    
Sbjct: 3443 LVQSLVGQRVIQVACGSRDAQTMALTADGSVYSWGDGDFGKLGRGGSDGCYTPLLI---- 3498

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               R  G GV +      + CG + +LA+ ++
Sbjct: 3499 --DRLNGLGVVQ------IECGAQFSLALTKY 3522



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 159/328 (48%), Gaps = 52/328 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--SVVAGSRNSLAICDDGK------ 58
            + A G G +G+LG+G++       ++  L  Y ++  +V +G +++LA+  DGK      
Sbjct: 3313 LYACGEGTNGRLGLGDDSNVCEPKLIPFLSQYMIKKMAVHSGGKHALALTQDGKIFSWGE 3372

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      + + + P  + +L + +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3373 GEDGKLGHGNSVSLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGH 3432

Query: 109  EPERKDDTGRILRRDIV---IPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWP 163
                  DT   ++  +V   + QR      V QVA G     ++ LT +G V++WG    
Sbjct: 3433 -----GDTATQMKPKLVQSLVGQR------VIQVACGSRDAQTMALTADGSVYSWGD--- 3478

Query: 164  PGDIKQI--------SVPV---RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  ++          P+   R+ GL  V+ I  GA  +LAL + G +W WG  +Y +L
Sbjct: 3479 -GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQ-IECGAQFSLALTKYGEVWTWGKGDYFRL 3536

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G+     +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G    +
Sbjct: 3537 GHGNDHHVRKPTLVEGLRGKKVVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGSTIVN 3596

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             K  P  V+ L    + +VSCG +HS+A
Sbjct: 3597 KK--PSLVHELDDARVNRVSCGSSHSIA 3622



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 62/312 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 4394 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------L 4417

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
              + P  +  L  T+IV  A GG H  A+   G  Y WG   YG+ G        T +++
Sbjct: 4418 MYDRPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSEDQLTPKLV 4477

Query: 121  R--RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI-------- 170
               +D         K+I     +G   ++ +T + +VW+WG     GD  ++        
Sbjct: 4478 EALQDY--------KVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGC 4525

Query: 171  SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             +P++++ L  + +I V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  
Sbjct: 4526 KIPMKIESLAGLGVIKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHVRRPRKVAA 4585

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L G  ++ IA G  H  A TD GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I
Sbjct: 4586 LQGKKIISIATGSLHCVACTDKGEVFTWGDNDEGQL--GDGTTSALQRPRLVHALQGKKI 4643

Query: 289  VQVSCGGTHSVA 300
             +V+CG  H++A
Sbjct: 4644 TRVACGSAHTLA 4655



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 106/194 (54%), Gaps = 18/194 (9%)

Query: 136 VRQVAAGGTHSVVLTREGHVWT--WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF--- 190
           ++Q+       ++L+  G+V+   +G         +   P RV G  +  +  + +    
Sbjct: 463 IKQLCCTERALMILSISGNVYMMYYGS--------ETQYPQRVYGFSEKPVTMIASHSDG 514

Query: 191 -HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H LAL +D ++++WGN + G+LG GD     +P  V+ L    +  IA G  +S  L+ 
Sbjct: 515 THYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVEALVDKNITFIACGSTYSAVLSS 574

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHI 307
           +GE+Y WGRG +GRLG G++D  + ++P  V  L G  +V V+CG   + ++ +T  G +
Sbjct: 575 NGELYTWGRGNYGRLGHGNSD--NVLIPTLVTALNGHMVVHVACGSGDSQTLCVTASGIV 632

Query: 308 FSFGRGDHGRLGYG 321
           FS+G G++G+LG G
Sbjct: 633 FSWGDGNYGKLGRG 646



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 127/286 (44%), Gaps = 34/286 (11%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD 115
           P +V   S   +   A    G H LA+      Y+WG  + G+ G       +EP+  + 
Sbjct: 494 PQRVYGFSEKPVTMIASHSDGTHYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVE- 552

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              ++ ++I              +A G T+S VL+  G ++TWG+        G+   + 
Sbjct: 553 --ALVDKNITF------------IACGSTYSAVLSSNGELYTWGRGNYGRLGHGNSDNVL 598

Query: 172 VPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +P  V  L    ++ V    G    L +   G +++WG+  YG+LG G       P  V 
Sbjct: 599 IPTLVTALNGHMVVHVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGCDGSKTPKIVD 658

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L  + +  +  GG  S ALT  GEVY WG+GE  RLG G+ +      P+ + +L  + 
Sbjct: 659 KLLDINVAKVYCGGQFSAALTAYGEVYTWGKGEGYRLGHGNEEHIR--YPKVIEVLXTKK 716

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + ++  G  H +ALT D  ++ +GR D+G++         +P   P
Sbjct: 717 VKELCVGNFHVLALTEDQLVYGWGRNDYGQIDPALGTVVPEPTLCP 762



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 22/237 (9%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           + GTH + LT++  V++WG         GD      P  V+ L  + +  IA G+ ++  
Sbjct: 512 SDGTHYLALTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVEALVDKNITFIACGSTYSAV 571

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL--TDDGE 252
           L  +G L+ WG   YG+LG G++     P  V  L+G  +V +A G   S  L  T  G 
Sbjct: 572 LSSNGELYTWGRGNYGRLGHGNSDNVLIPTLVTALNGHMVVHVACGSGDSQTLCVTASGI 631

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG G +G+LG G  D S    P+ V+ L   ++ +V CGG  S ALT  G ++++G+
Sbjct: 632 VFSWGDGNYGKLGRGGCDGSK--TPKIVDKLLDINVAKVYCGGQFSAALTAYGEVYTWGK 689

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           G+  RLG+G +     P  + +           +  + + +L   G  H LA+ E Q
Sbjct: 690 GEGYRLGHGNEEHIRYPKVIEV-----------LXTKKVKELCV-GNFHVLALTEDQ 734



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P+  + LS L  V +  G     A+T DG+VY  G 
Sbjct: 4292 GAIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLLAVTADGKVYATGY 4351

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S MVP  +  +    +  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 4352 GAAGRLGIGGTD--SVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 4409

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G ++   +P  +   +       + VD       +ACGG H+ AI
Sbjct: 4410 KLGHGNRLMYDRPKLIEELL-----GTEIVD-------IACGGHHSAAI 4446



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 32/270 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +   +S+ +WG+G+ G+LG G+    +   +V+AL    +  +  GS  S  +  +G+  
Sbjct: 520 LTQDSSVYSWGNGDGGRLGHGDRVWYDEPKLVEALVDKNITFIACGSTYSAVLSSNGELY 579

Query: 61  T--------------EN--IPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T              +N  IP+ V AL+   +V  A G      L V   G  ++WG   
Sbjct: 580 TWGRGNYGRLGHGNSDNVLIPTLVTALNGHMVVHVACGSGDSQTLCVTASGIVFSWGDGN 639

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YG+ G        T +I+ + + I         V +V  GG  S  LT  G V+TWG+  
Sbjct: 640 YGKLGRGGCDGSKTPKIVDKLLDIN--------VAKVYCGGQFSAALTAYGEVYTWGKGE 691

Query: 161 --PWPPGDIKQISVP--VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G+ + I  P  + V   ++VK + VG FH LAL ED  ++ WG N+YGQ+    
Sbjct: 692 GYRLGHGNEEHIRYPKVIEVLXTKKVKELCVGNFHVLALTEDQLVYGWGRNDYGQIDPAL 751

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                +P     LSG  ++ +A G   S A
Sbjct: 752 GTVVPEPTLCPTLSGKNIIGLACGLTQSFA 781



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 113/257 (43%), Gaps = 50/257 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+   +    +V++L   +V  V  GSR       D +T 
Sbjct: 3413 ITSSGELYTWGLGEYGRLGHGDTATQMKPKLVQSLVGQRVIQVACGSR-------DAQT- 3464

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      +A+   G  Y+WG  ++G+ G        T  ++
Sbjct: 3465 --------------------------MALTADGSVYSWGDGDFGKLGRGGSDGCYTPLLI 3498

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V Q+  G   S+ LT+ G VWTWG+        G+   +  P  V
Sbjct: 3499 DR--------LNGLGVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV 3550

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL  ++V  +AVGA H LA+ + G ++AWG+N++GQ G G T    +P  V  L    +
Sbjct: 3551 EGLRGKKVVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGSTIVNKKPSLVHELDDARV 3610

Query: 235  VDIAAGGWHSTA--LTD 249
              ++ G  HS A  LTD
Sbjct: 3611 NRVSCGSSHSIAWVLTD 3627



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 26/248 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  V AL +  I   A G  +   +   G  Y WG   YG+ G               ++
Sbjct: 548 PKLVEALVDKNITFIACGSTYSAVLSSNGELYTWGRGNYGRLGHGNSD----------NV 597

Query: 125 VIPQRCAPK--LIVRQVAAGG--THSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
           +IP         +V  VA G   + ++ +T  G V++WG         G       P  V
Sbjct: 598 LIPTLVTALNGHMVVHVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGCDGSKTPKIV 657

Query: 177 QGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
             L  + +  V  G   + AL   G ++ WG  E  +LG G+ +    P  ++ L    +
Sbjct: 658 DKLLDINVAKVYCGGQFSAALTAYGEVYTWGKGEGYRLGHGNEEHIRYPKVIEVLXTKKV 717

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRL--GFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            ++  G +H  ALT+D  VYGWGR ++G++    G       + P     L+G++I+ ++
Sbjct: 718 KELCVGNFHVLALTEDQLVYGWGRNDYGQIDPALGTVVPEPTLCPT----LSGKNIIGLA 773

Query: 293 CGGTHSVA 300
           CG T S A
Sbjct: 774 CGLTQSFA 781


>gi|348527836|ref|XP_003451425.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Oreochromis niloticus]
          Length = 4833

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3952 TIYGWGHNHRGQLGGIEGAKVKVPTSTEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4011

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4012 AGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4071

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++             + V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4072 HGNRSPCDRPRVIES--------LRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLG 4123

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V  L+  ++I V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4124 HGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGDYGKLGRGGSDG 4183

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4184 CKIPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4241

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4242 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4297

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4298 Q--GKKINR------VACGSAHTLA---WSTSK 4319



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 182/387 (47%), Gaps = 49/387 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 2956 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYACGE 3015

Query: 59   -----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                       + T  IP Q+ ALSN  I + A+  GG H +A+   G+ ++WG  + G+
Sbjct: 3016 ATNGRLGLGLSSGTIPIPRQITALSNYVIKKVAVHSGGRHAMALTVDGKVFSWGEGDDGK 3075

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  +T  G +++WG      
Sbjct: 3076 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAAITSSGELYSWGLGEYGR 3127

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 3128 LGHGDNTTQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGFVFSWGDGDFGKLGRGGS 3187

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            +  + P  ++ L+G  +  I  G   S ALT  G V+ WG+G++ RLG G +    K  P
Sbjct: 3188 EGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK--P 3245

Query: 278  QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            Q V  L G+ IV V+ G  H +A+T  G ++++G  DHG+ G G      +P  V     
Sbjct: 3246 QMVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTTTVNRKPTLV----- 3300

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLA 364
                   G++ + I + VACG  H++A
Sbjct: 3301 ------QGLEGQKITR-VACGSSHSVA 3320



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 156/328 (47%), Gaps = 44/328 (13%)

Query: 33  KALEPYKVRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGW 84
           KAL    V  +V   +  L +   G   ++N       P  ++ LS+ KIV+ A    G 
Sbjct: 437 KALSSLGVTQIVCSEKGFLILSSSGAVYSQNYKSTTLAPMLIHVLSSRKIVKLAAHPDGQ 496

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI--------- 135
           H LA+   G  ++WG      CG       D GR+   D    +   PK+I         
Sbjct: 497 HYLALSSNGEVFSWG------CG-------DGGRLGHGDTTYLEE--PKMIGTFNGKQAG 541

Query: 136 --VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV-- 187
             V  VA G T+S  +T +G ++TWG+        G  +  + P+ V   + +K++ V  
Sbjct: 542 KHVVHVACGSTYSAAITADGELYTWGRGNYGRLGHGSSEDQTTPMVVTAFKGLKVVDVAC 601

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G    LA+ E+G +W+WG+ +YG+LG G +     P  V+ L  L +V +  G   S 
Sbjct: 602 GSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLVEKLQDLDIVKVCCGSQFSV 661

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALT DG+VY WG+G++ RLG G ++      P+ ++ L G+ +V V+ G TH +ALT DG
Sbjct: 662 ALTKDGQVYTWGKGDNQRLGHGTDEHVR--YPKLLDSLQGKKVVDVAVGSTHCLALTDDG 719

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            + S+G  D  +          QP  +P
Sbjct: 720 EVLSWGSNDKLQHFDTLFSNKKQPKALP 747



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 167/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2978 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYA--------CGEATNGRLGLG-LSSG 3028

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             I IP++       ++++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 3029 TIPIPRQITALSNYVIKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3088

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L++WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3089 LIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGH 3148

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  VPQ +  L G+ + Q
Sbjct: 3149 RVIQVACGSRDAQTLALTDEGFVFSWGDGDFGKLGRGGSEGCN--VPQNIERLNGQGVCQ 3206

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3207 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQMV-----------EGLRGKK 3255

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3256 IVH-VAVGALHCLAVTD 3271



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 158/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            I A G   +G+LG+G +       R+    + AL  Y ++ V   +G R+++A+  DGK 
Sbjct: 3010 IYACGEATNGRLGLGLSSGTIPIPRQ----ITALSNYVIKKVAVHSGGRHAMALTVDGKV 3065

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y+WG  EY
Sbjct: 3066 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEY 3125

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PKL+       V QVA G     ++ LT EG 
Sbjct: 3126 GRLGH----GDNTTQL-----------RPKLVKVLLGHRVIQVACGSRDAQTLALTDEGF 3170

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        +VP  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3171 VFSWGD----GDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3226

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3227 GKGDYFRLGHGTDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3286

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3287 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3322



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 36/272 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G+  
Sbjct: 4053 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELF 4112

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V+AL   +++  A G      L + D    ++WG  +
Sbjct: 4113 TWGKGRYGRLGHGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGD 4172

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            YG+ G    R    G        IP +      L V +V  G   SV LT+ G V+TWG+
Sbjct: 4173 YGKLG----RGGSDG------CKIPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK 4222

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG 
Sbjct: 4223 GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGD 4282

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G T    +P  V  L G  +  +A G  H+ A
Sbjct: 4283 GTTNAIQRPRLVAALQGKKINRVACGSAHTLA 4314



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 36/280 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNN---EEREWVCVVKALEPYK-VRSVVAGSRNSLAICDD 56
           ++S   + +WG G+ G+LG G+    EE + +      +  K V  V  GS  S AI  D
Sbjct: 501 LSSNGEVFSWGCGDGGRLGHGDTTYLEEPKMIGTFNGKQAGKHVVHVACGSTYSAAITAD 560

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                +  P  V A    K+V  A G      LAV + G+ ++W
Sbjct: 561 GELYTWGRGNYGRLGHGSSEDQTTPMVVTAFKGLKVVDVACGSGDAQTLAVTENGQVWSW 620

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   SV LT++G V+TW
Sbjct: 621 GDGDYGKLGRGGSDGCKTPKLVEK--------LQDLDIVKVCCGSQFSVALTKDGQVYTW 672

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  +  L+  K+  +AVG+ H LAL +DG + +WG+N+  Q 
Sbjct: 673 GKGDNQRLGHGTDEHVRYPKLLDSLQGKKVVDVAVGSTHCLALTDDGEVLSWGSNDKLQH 732

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
                  + QP  + GL+   +V I+ G   S A +   E
Sbjct: 733 FDTLFSNKKQPKALPGLNSKHIVGISCGPGQSFAWSSSSE 772



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLG----------------------------------TGD-------- 216
            G ++ WG+N  GQLG                                  T D        
Sbjct: 3951 GTIYGWGHNHRGQLGGIEGAKVKVPTSTEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4010

Query: 217  ----------TQPRSQPIPVQGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRL 264
                      T+  S P  ++ +  + +  +A  +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4011 GAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4070

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 4071 GHGNRSPCDR--PRVIESLRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLGHG 4125



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  + +WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3111 ITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGF 3170

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 N+P  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3171 VFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3230

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  ++      K++   VA G  H + +T  G V+ WG   
Sbjct: 3231 YFRLGH------GTDVHVRKPQMVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3282

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3283 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3320


>gi|301755904|ref|XP_002913788.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Ailuropoda melanoleuca]
 gi|281346973|gb|EFB22557.1| hypothetical protein PANDA_001627 [Ailuropoda melanoleuca]
          Length = 1057

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|327268092|ref|XP_003218832.1| PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Anolis
            carolinensis]
          Length = 4839

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3958 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4017

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4018 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4077

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4078 HGNRSPCDRPRVIESLRGIE--------VVDIAAGGAHSACITAAGDLYTWGKGRYGRLG 4129

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4130 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4189

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+G+ +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4190 CKVPMKIDSLTGVGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4247

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4248 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4303

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4304 Q--GKKINR------VACGSAHTLA---WSTSK 4325



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 167/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V +L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDILGPQLVQSLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  ++WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVFSWG------CG-------DGGRLGHGDTVPLEE--PKMISALSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V ++ G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVSCGSQFSVALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L GE ++ V  G TH +ALT D  ++S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGEKVIDVVAGSTHCLALTEDSEVYSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     ++T   P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRITKPDPTALP-----------GLDSKHIVG-IACGPAQSFA 776



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 167/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2985 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-LSSG 3035

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 3036 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3095

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L++WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3096 LIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3155

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3213

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3214 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3262

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3263 IIH-VAVGALHCLAVTD 3278



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 153/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  + Q A      L +   GR Y    N                     DI
Sbjct: 443 PIQCEGLASLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DI 482

Query: 125 VIPQ---RCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LGPQLVQSLASRNIVKIAAHSDGHHYLALAATGEVFSWGCGDGGRLGHGDTVPLEEPKMI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL 
Sbjct: 543 SALSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   DI
Sbjct: 603 GLKVIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDI 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+VSCG   SVALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVSCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
             +  +VA G  H LA+ E
Sbjct: 710 EKVIDVVA-GSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 157/334 (47%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     +   + AL  Y V+ V   +G R+++A+  DGK  +  
Sbjct: 3017 VYACGEATNGRLGLGLSSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWG 3076

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y+WG  EYG+ G
Sbjct: 3077 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLG 3136

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 3137 ----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 3181

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 3182 GD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 3238 YFRLGHGTDVHVRKPQVVEGLRGKKIIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGT 3297

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSV+ T
Sbjct: 3298 TTVNRK--PTLVQGLEGQKITRVACGSSHSVSWT 3329



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2964 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 3013

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 3014 EGKVYACGEA-TNGRLGLGLSSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKV 3072

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 3073 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEY 3132

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 3133 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 3190

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 3191 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 3226



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4059 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4086

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   +   G  Y WG   YG+ G    E + K    
Sbjct: 4087 ----PRVIESLRGIEVVDIAAGGAHSACITAAGDLYTWGKGRYGRLGHGDSEDQLKPKLV 4142

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4143 EALQGYRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4189

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  V ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4190 CKVPMKIDSLTGVGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4249

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4250 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4307

Query: 288  IVQVSCGGTHSVA 300
            I +V+CG  H++A
Sbjct: 4308 INRVACGSAHTLA 4320



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   ++ AL   +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVFSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                + IP  V  L   K++  + G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V+ G   SV LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDIVKVSCGSQFSVALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I V  G+ H LAL ED  +++WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGEKVIDVVAGSTHCLALTEDSEVYSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  +  P  + GL    +V IA G   S A
Sbjct: 743 FDTLRITKPDPTALPGLDSKHIVGIACGPAQSFA 776



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3957 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4016

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4017 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4076

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G ++++G+G +GRLG+G
Sbjct: 4077 GHGNRSPCDR--PRVIESLRGIEVVDIAAGGAHSACITAAGDLYTWGKGRYGRLGHG 4131



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 46/158 (29%)

Query: 221 SQPIPVQGLSGLTLVDIAAG---------------------------------------- 240
           S PI  +GL+ L +  IA                                          
Sbjct: 441 SGPIQCEGLASLGVTQIACAEKRFLILSRNGRVYTQAYNSDILGPQLVQSLASRNIVKIA 500

Query: 241 ----GWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKMVPQKVNLLAGEDIVQVSCG 294
               G H  AL   GEV+ WG G+ GRLG GD    +  KM+       AG+ +V ++CG
Sbjct: 501 AHSDGHHYLALAATGEVFSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACG 560

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            T+S A+T +G ++++GRG++GRLG+G       PM V
Sbjct: 561 STYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLV 598



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 102/266 (38%), Gaps = 72/266 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  + +WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3118 ITSSGELYSWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3178 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G        T   +R+  V+      K+I   VA G  H + +T  G V+ WG   
Sbjct: 3238 YFRLGH------GTDVHVRKPQVVEGLRGKKII--HVAVGALHCLAVTDTGQVYAWG--- 3286

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                       +N++GQ G G T    +
Sbjct: 3287 -------------------------------------------DNDHGQQGNGTTTVNRK 3303

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALT 248
            P  VQGL G  +  +A G  HS + T
Sbjct: 3304 PTLVQGLEGQKITRVACGSSHSVSWT 3329


>gi|301755906|ref|XP_002913789.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Ailuropoda melanoleuca]
          Length = 1049

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|73952755|ref|XP_536367.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Canis lupus familiaris]
          Length = 1049

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|108761023|ref|YP_629150.1| RCC1 repeat-containing protein [Myxococcus xanthus DK 1622]
 gi|108464903|gb|ABF90088.1| RCC1 repeat domain protein [Myxococcus xanthus DK 1622]
          Length = 1466

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 172/353 (48%), Gaps = 40/353 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           +  T ++ AWG+   GQLG G+  +R     V  L    V SVV G++++L +  DG   
Sbjct: 324 LLDTGAVFAWGANGSGQLGDGDTTDRATPGPVPGLN--AVASVVGGAQHALVLRKDGTLW 381

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         ++   +P+ V  L+   +   A G +H LA    G  +AWG N YG
Sbjct: 382 AWGGGLSGQLGHGGSERHVVPAPVMRLAG--VTSMATGSFHSLAALGDGSVWAWGRNTYG 439

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G    R   +  R      VR VA+   HS+ +  +G VW WG+    
Sbjct: 440 QLGD--------GSTAERHAAV--RVEGLGGVRSVASAAHHSLAVGMDGTVWAWGRNAAG 489

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G     + PV V GL  V  +A G  H LAL+ DG++WAWG N  GQLG G T  R
Sbjct: 490 QLGDGTTLDRARPVAVPGLTSVTAVAAGGSHVLALRSDGSVWAWGYNALGQLGDGTTVDR 549

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V GL    +V +AAG + S AL  DG V+ WG G  G+LG  D     ++ P +V
Sbjct: 550 LTPVRVSGLG--AVVAVAAGSYFSMALQSDGTVWTWGEGFEGQLG--DGGGVQRLSPVRV 605

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             LA  +I +V+ G  H++A+  DG ++++G    G+LG G      +P++VP
Sbjct: 606 EGLA--NITRVAAGSAHALAVRGDGTVWAWGDNGEGQLGDGSWADRFRPVQVP 656



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 170/338 (50%), Gaps = 36/338 (10%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------- 57
            AWG+   GQLG G N  R     V +L+   +R++ AG+ + +A+  DG           
Sbjct: 982  AWGTNPSGQLGDGTNHARSVPNQVTSLK--GIRAMSAGAHHVVALSADGTVWTWGDNTLG 1039

Query: 58   ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   + T   P QV  L   + V A  G    +AV   G A AWG NEYGQ G+   
Sbjct: 1040 QLGDGSSSPTGMWPRQVPELRGVEAVAA--GEQFTVAVLLDGTARAWGSNEYGQLGD--- 1094

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                TG  L    V  +    +  VR V A G H+VV   +G V TWG         G  
Sbjct: 1095 --GKTGPQLTPMAVKIEGPKIRPPVRTVRAWGQHAVVQMSDGTVQTWGDNTFGQLGDGTT 1152

Query: 168  KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
             + +VP+ V GL  V  ++ GA+H+LAL  DG +WAWG N +GQLG G + PR++P+ V 
Sbjct: 1153 TRRAVPLTVYGLASVVAVSSGAWHSLALLSDGTVWAWGANGFGQLGDGTSTPRTRPVQVA 1212

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL    +V I +GG+H+ A+  DG V+ WG    G+L  GD    S+ +P +V  L  E 
Sbjct: 1213 GLG--DVVAIGSGGYHALAVCSDGSVWTWGYNAFGQL--GDGTAESRSLPTRVEGL--EG 1266

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            +V V+ G  +S+AL  DG + ++G    G+LG G   T
Sbjct: 1267 VVAVAGGDHYSLALHSDGTLSAWGNNASGQLGDGTGTT 1304



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 168/348 (48%), Gaps = 42/348 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           S+ AWG    GQLG G+  ER     V+ L    VRSV + + +SLA+            
Sbjct: 429 SVWAWGRNTYGQLGDGSTAERHAAVRVEGLG--GVRSVASAAHHSLAVGMDGTVWAWGRN 486

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P  V  L  T +   A GG H LA+   G  +AWG N  GQ G+ 
Sbjct: 487 AAGQLGDGTTLDRARPVAVPGL--TSVTAVAAGGSHVLALRSDGSVWAWGYNALGQLGDG 544

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
                        D + P R +    V  VAAG   S+ L  +G VWTWG+ +       
Sbjct: 545 TTV----------DRLTPVRVSGLGAVVAVAAGSYFSMALQSDGTVWTWGEGFEGQLGDG 594

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G ++++S PVRV+GL  +  +A G+ H LA++ DG +WAWG+N  GQLG G    R +P+
Sbjct: 595 GGVQRLS-PVRVEGLANITRVAAGSAHALAVRGDGTVWAWGDNGEGQLGDGSWADRFRPV 653

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL G+T V  + G  HS AL  DG V  WG   +G+L  GD   +S++ P  +  L 
Sbjct: 654 QVPGLQGITAV--SGGRSHSMALQGDGTVRAWGYNGYGQL--GDGTLTSRVRPALIPGLT 709

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G   +  S    H +AL  DG +  +G    G+LG G    +  P++V
Sbjct: 710 GIQALHPSH--LHVLALHADGTLRGWGYNRFGQLGLGAAGWSAVPVQV 755



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 163/348 (46%), Gaps = 40/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG G  GQLG G +E    V     +    V S+  GS +SLA   DG        
Sbjct: 379 TLWAWGGGLSGQLGHGGSERH--VVPAPVMRLAGVTSMATGSFHSLAALGDGSVWAWGRN 436

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   +   +V  L   + V +A    H LAV   G  +AWG N  GQ G  
Sbjct: 437 TYGQLGDGSTAERHAAVRVEGLGGVRSVASAAH--HSLAVGMDGTVWAWGRNAAGQLG-- 492

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
               D T     R + +P   +    V  VAAGG+H + L  +G VW WG         G
Sbjct: 493 ----DGTTLDRARPVAVPGLTS----VTAVAAGGSHVLALRSDGSVWAWGYNALGQLGDG 544

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PVRV GL  V  +A G++ ++ALQ DG +W WG    GQLG G    R  P+ 
Sbjct: 545 TTVDRLTPVRVSGLGAVVAVAAGSYFSMALQSDGTVWTWGEGFEGQLGDGGGVQRLSPVR 604

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V+GL+ +T V  AAG  H+ A+  DG V+ WG    G+LG  D   + +  P +V  L G
Sbjct: 605 VEGLANITRV--AAGSAHALAVRGDGTVWAWGDNGEGQLG--DGSWADRFRPVQVPGLQG 660

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             I  VS G +HS+AL  DG + ++G   +G+LG G   +  +P  +P
Sbjct: 661 --ITAVSGGRSHSMALQGDGTVRAWGYNGYGQLGDGTLTSRVRPALIP 706



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 163/348 (46%), Gaps = 42/348 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWGS   GQLG G + +R  +  VK  E   +  V AG+ ++LA+  DG   T    
Sbjct: 229 TVRAWGSNGSGQLGDGTSTQR--LSPVKVSELSGITEVRAGTYHALALGKDGGVWTWGSN 286

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         +P QV  L   K V +       LA+ D G  +AWG N  GQ G+ 
Sbjct: 287 ASGQLGDGTWNDRAVPMQVPGLERVKAVASMDS--DSLALLDTGAVFAWGANGSGQLGD- 343

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
               D T      D   P        V  V  G  H++VL ++G +W WG     Q    
Sbjct: 344 ---GDTT------DRATPGPVPGLNAVASVVGGAQHALVLRKDGTLWAWGGGLSGQLGHG 394

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G  + + VP  V  L  V  +A G+FH+LA   DG++WAWG N YGQLG G T  R   +
Sbjct: 395 GSERHV-VPAPVMRLAGVTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGSTAERHAAV 453

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V+GL G+  V  AA   HS A+  DG V+ WGR   G+L  GD     +  P  V  L 
Sbjct: 454 RVEGLGGVRSVASAAH--HSLAVGMDGTVWAWGRNAAGQL--GDGTTLDRARPVAVPGL- 508

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +  V+ GG+H +AL  DG ++++G    G+LG G  V    P+ V
Sbjct: 509 -TSVTAVAAGGSHVLALRSDGSVWAWGYNALGQLGDGTTVDRLTPVRV 555



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 180/380 (47%), Gaps = 54/380 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+  WG    GQLG G   +R     V  L+   V +V AG  +SLA+ +DG        
Sbjct: 129 SVWTWGGNSSGQLGDGTTTDRATPMRVAGLD--SVVAVAAGDFHSLALREDGTVWAWGTN 186

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T+    P QV  L+   +V  A G    LAV + G   AWG N  GQ G+ 
Sbjct: 187 FHGQLGRGHTQPGLTPEQVPGLNG--VVALAAGFDFTLAVLEDGTVRAWGSNGSGQLGDG 244

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
              +           + P + +    + +V AG  H++ L ++G VWTWG         G
Sbjct: 245 TSTQR----------LSPVKVSELSGITEVRAGTYHALALGKDGGVWTWGSNASGQLGDG 294

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                +VP++V GLE+VK +A     +LAL + GA++AWG N  GQLG GDT  R+ P P
Sbjct: 295 TWNDRAVPMQVPGLERVKAVASMDSDSLALLDTGAVFAWGANGSGQLGDGDTTDRATPGP 354

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   +  +  G  H+  L  DG ++ WG G  G+LG G +++   +VP  V  LAG
Sbjct: 355 VPGLN--AVASVVGGAQHALVLRKDGTLWAWGGGLSGQLGHGGSER--HVVPAPVMRLAG 410

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             +  ++ G  HS+A   DG ++++GR  +G+LG G                A R+A   
Sbjct: 411 --VTSMATGSFHSLAALGDGSVWAWGRNTYGQLGDGST--------------AERHAAVR 454

Query: 346 VDRRWIAKLVACGGRHTLAI 365
           V+     + VA    H+LA+
Sbjct: 455 VEGLGGVRSVASAAHHSLAV 474



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 163/348 (46%), Gaps = 41/348 (11%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR-------------------- 48
            AWGS E GQLG G    +     VK +E  K+R  V   R                    
Sbjct: 1083 AWGSNEYGQLGDGKTGPQLTPMAVK-IEGPKIRPPVRTVRAWGQHAVVQMSDGTVQTWGD 1141

Query: 49   NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
            N+     DG T    +P  V  L++  +V  + G WH LA+   G  +AWG N +GQ G 
Sbjct: 1142 NTFGQLGDGTTTRRAVPLTVYGLAS--VVAVSSGAWHSLALLSDGTVWAWGANGFGQLG- 1198

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                 D T     R    P + A    V  + +GG H++ +  +G VWTWG         
Sbjct: 1199 -----DGTSTPRTR----PVQVAGLGDVVAIGSGGYHALAVCSDGSVWTWGYNAFGQLGD 1249

Query: 165  GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            G  +  S+P RV+GLE V  +A G  ++LAL  DG L AWGNN  GQLG G    R   +
Sbjct: 1250 GTAESRSLPTRVEGLEGVVAVAGGDHYSLALHSDGTLSAWGNNASGQLGDGTGTTRYSRV 1309

Query: 225  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
             V+      +VD+ AG  H+ AL  DG V+ WG    G+LG G +    ++VP+ V  L+
Sbjct: 1310 AVK--GVDGVVDVRAGATHTVALRGDGTVWTWGDNAFGQLGDGASGTRMRLVPRPVPNLS 1367

Query: 285  GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
               +  V  G  H+ A+   G ++++GR  HG+LG G      +P+ V
Sbjct: 1368 --SVSAVGAGARHTFAVALKGTVWTWGRNSHGQLGLGDNTNRTEPLRV 1413



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 156/352 (44%), Gaps = 47/352 (13%)

Query: 6    SIIAWGSGEDGQLGIG--------------NNEEREWVCVVKALEPYKVRSVVAGSRNSL 51
            ++  WG    GQLG+G                 +R  V     L      +V+A   N  
Sbjct: 729  TLRGWGYNRFGQLGLGAAGWSAVPVQVRGIGRVDRLSVGRAHTLMVRADGTVMAWGENGS 788

Query: 52   AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                DG +     P  V  +   + V + I   H LA+   G  +AWG N  GQ G    
Sbjct: 789  GQLGDGTSTHRTGPVSVPGVPCVRSVASGIQ--HSLALACDGTVWAWGANARGQLG---- 842

Query: 112  RKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP--- 163
                       D     R  P L+     V  +AAGG  SV L  +G VW+WG       
Sbjct: 843  -----------DGTTTPRVTPGLVEGLRGVVALAAGGDASVALRADGSVWSWGGNASGQL 891

Query: 164  -PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              G +   ++P  V+ L     +AVG  H LA+ EDGALWAWG N  GQLG G T P   
Sbjct: 892  GDGTLTDRALPAHVEHLSNAVAVAVGETHALAVGEDGALWAWGANGSGQLGDGGTAPSLT 951

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            P+ V+GL    +  +AAG   S A+ DDG  + WG    G+LG G N   S  VP +V  
Sbjct: 952  PVRVKGLE--RVASVAAGRAFSVAVRDDGTAWAWGTNPSGQLGDGTNHARS--VPNQVTS 1007

Query: 283  LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ-PMEVP 333
            L G  I  +S G  H VAL+ DG ++++G    G+LG G    TG  P +VP
Sbjct: 1008 LKG--IRAMSAGAHHVVALSADGTVWTWGDNTLGQLGDGSSSPTGMWPRQVP 1057



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 10/213 (4%)

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
           + P R A    +  V +G  HS+ L  +G VWTWG         G     + P+RV GL+
Sbjct: 100 LAPVRLAALENIVSVVSGDAHSLALGADGSVWTWGGNSSGQLGDGTTTDRATPMRVAGLD 159

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            V  +A G FH+LAL+EDG +WAWG N +GQLG G TQP   P  V GL+G  +V +AAG
Sbjct: 160 SVVAVAAGDFHSLALREDGTVWAWGTNFHGQLGRGHTQPGLTPEQVPGLNG--VVALAAG 217

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              + A+ +DG V  WG    G+L  GD   + ++ P KV+ L+G  I +V  G  H++A
Sbjct: 218 FDFTLAVLEDGTVRAWGSNGSGQL--GDGTSTQRLSPVKVSELSG--ITEVRAGTYHALA 273

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           L +DG ++++G    G+LG G       PM+VP
Sbjct: 274 LGKDGGVWTWGSNASGQLGDGTWNDRAVPMQVP 306



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 155/357 (43%), Gaps = 44/357 (12%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
            +A   ++ AWG+   GQLG G    R    +V+ L    V ++ AG   S+A+       
Sbjct: 824  LACDGTVWAWGANARGQLGDGTTTPRVTPGLVEGLR--GVVALAAGGDASVALRADGSVW 881

Query: 54   ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       DG      +P+ V  LSN   V  A+G  H LAV + G  +AWG N  G
Sbjct: 882  SWGGNASGQLGDGTLTDRALPAHVEHLSNA--VAVAVGETHALAVGEDGALWAWGANGSG 939

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
            Q G+       T          P R      V  VAAG   SV +  +G  W WG   P 
Sbjct: 940  QLGDGGTAPSLT----------PVRVKGLERVASVAAGRAFSVAVRDDGTAWAWGTN-PS 988

Query: 165  GDI-----KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            G +        SVP +V  L+ ++ ++ GA H +AL  DG +W WG+N  GQLG G + P
Sbjct: 989  GQLGDGTNHARSVPNQVTSLKGIRAMSAGAHHVVALSADGTVWTWGDNTLGQLGDGSSSP 1048

Query: 220  RSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  V  L G+  V  AAG   + A+  DG    WG  E+G+L  GD     ++ P 
Sbjct: 1049 TGMWPRQVPELRGVEAV--AAGEQFTVAVLLDGTARAWGSNEYGQL--GDGKTGPQLTPM 1104

Query: 279  KVNLLAGE---DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             V +   +    +  V   G H+V    DG + ++G    G+LG G       P+ V
Sbjct: 1105 AVKIEGPKIRPPVRTVRAWGQHAVVQMSDGTVQTWGDNTFGQLGDGTTTRRAVPLTV 1161



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 138/304 (45%), Gaps = 40/304 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            + S  ++ AWG+   GQLG G +  R     V  L    V ++ +G  ++LA+C DG   
Sbjct: 1180 LLSDGTVWAWGANGFGQLGDGTSTPRTRPVQVAGLG--DVVAIGSGGYHALAVCSDGSVW 1237

Query: 59   --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                           ++ ++P++V  L    +V  A G  + LA+   G   AWG N  G
Sbjct: 1238 TWGYNAFGQLGDGTAESRSLPTRVEGLEG--VVAVAGGDHYSLALHSDGTLSAWGNNASG 1295

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
            Q G      D TG   R   V  +     + VR   AG TH+V L  +G VWTWG     
Sbjct: 1296 QLG------DGTGTT-RYSRVAVKGVDGVVDVR---AGATHTVALRGDGTVWTWGDNAFG 1345

Query: 163  PPGD----IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD     +   VP  V  L  V  +  GA H  A+   G +W WG N +GQLG GD  
Sbjct: 1346 QLGDGASGTRMRLVPRPVPNLSSVSAVGAGARHTFAVALKGTVWTWGRNSHGQLGLGDNT 1405

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             R++P+ V+ LS +T+V  + G   S A+  DG V  WG   +G LG G     S   P 
Sbjct: 1406 NRTEPLRVRELSDVTVV--SGGADFSLAMKRDGTVLSWGSSLYGSLGLGATGHRSS--PG 1461

Query: 279  KVNL 282
            +V L
Sbjct: 1462 QVAL 1465



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 147/341 (43%), Gaps = 40/341 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  S+ AWG    GQLG G   +R     V  L    V +V AGS  S+A+  DG   
Sbjct: 524 LRSDGSVWAWGYNALGQLGDGTTVDRLTPVRVSGLG--AVVAVAAGSYFSMALQSDGTVW 581

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T                   P +V  L+N  I + A G  H LAV   G  +AWG N  G
Sbjct: 582 TWGEGFEGQLGDGGGVQRLSPVRVEGLAN--ITRVAAGSAHALAVRGDGTVWAWGDNGEG 639

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G      D +     R + +P        +  V+ G +HS+ L  +G V  WG     
Sbjct: 640 QLG------DGSWADRFRPVQVPGLQG----ITAVSGGRSHSMALQGDGTVRAWGYNGYG 689

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G +     P  + GL  ++ +     H LAL  DG L  WG N +GQLG G     
Sbjct: 690 QLGDGTLTSRVRPALIPGLTGIQALHPSHLHVLALHADGTLRGWGYNRFGQLGLGAAGWS 749

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ V+G+  +  + +  G  H+  +  DG V  WG    G+LG    D +S      V
Sbjct: 750 AVPVQVRGIGRVDRLSV--GRAHTLMVRADGTVMAWGENGSGQLG----DGTSTHRTGPV 803

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           ++     +  V+ G  HS+AL  DG ++++G    G+LG G
Sbjct: 804 SVPGVPCVRSVASGIQHSLALACDGTVWAWGANARGQLGDG 844


>gi|301755908|ref|XP_002913790.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           3 [Ailuropoda melanoleuca]
          Length = 1054

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|73952739|ref|XP_849808.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Canis lupus familiaris]
          Length = 1057

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQASPQLIKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRTQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|380019055|ref|XP_003693433.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like [Apis florea]
          Length = 4812

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 189/402 (47%), Gaps = 62/402 (15%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +   + ++L   +   +  G +   A+  DGK       
Sbjct: 3954 AIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVYATGYG 4013

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  + + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 4014 AVGRLGIGGTDSVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 4073

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                     G  L  D        PKLI       +  +A GG HS  +T  G ++TWG+
Sbjct: 4074 H--------GNRLSYD-------RPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGK 4118

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  ++ L+  K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 4119 GRYGRLGHGDSEDQLTPKLIEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKL 4178

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P+ ++ L+GL +V +  G   S ALT  G +Y WG+G++ RLG G +D  
Sbjct: 4179 GRGGSDGCKIPMKIESLAGLGVVKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHV 4238

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA T  G +F++G  D G+LG G    T   ++ 
Sbjct: 4239 RR--PRKVAALQGKKIISIATGSLHCVACTDKGEVFTWGDNDEGQLGDG----TTSALQR 4292

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
            P  + A +  G  + R      VACG  HTLA    +  +SK
Sbjct: 4293 PRLVHALQ--GKKITR------VACGSAHTLAWSTMKATQSK 4326



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 157/312 (50%), Gaps = 28/312 (8%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K V  A G      V  +G+ YA G    G+ G      DD+     + 
Sbjct: 2957 LPVYSEVLSKLKPVHIAGGSKTLFVVSQEGKLYACGEGTNGRLG----LGDDSNVCEPKP 3012

Query: 124  IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
            I    +   K +   V +GG H++ LT++G V++WG+        G+   +  P  ++ L
Sbjct: 3013 IPFLSQYVIKKV--SVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNSISLDKPRLIESL 3070

Query: 180  E--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
            +  +++ IA G+ H+ A+   G L+ WG  EYG+LG GDT  +S+P  VQ L G  ++ I
Sbjct: 3071 KSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGHGDTATQSKPKLVQSLVGQRIIQI 3130

Query: 238  AAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            A G     + ALT DG VY WG G+ G+LG G +D      P  ++ L G  +VQ+ CG 
Sbjct: 3131 ACGSRDAQTMALTADGLVYSWGDGDFGKLGRGGSDGC--YTPLLIDRLNGLGVVQIECGA 3188

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
              S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+  + +   V
Sbjct: 3189 QFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGLRGKKVIH-V 3236

Query: 356  ACGGRHTLAIVE 367
            A G  H LA+ +
Sbjct: 3237 AVGALHCLAVTD 3248



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 142/286 (49%), Gaps = 36/286 (12%)

Query: 95   AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLTRE 152
             Y WG N+          KD  G +    I +P       KL    +A G     V+++E
Sbjct: 2936 VYVWGLND----------KDQLGGLKGSKIKLPVYSEVLSKLKPVHIAGGSKTLFVVSQE 2985

Query: 153  GHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAW 204
            G ++  G+        GD   +  P  +  L Q  +K ++V  G  H LAL +DG +++W
Sbjct: 2986 GKLYACGEGTNGRLGLGDDSNVCEPKPIPFLSQYVIKKVSVHSGGKHALALTQDGKVFSW 3045

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  E G+LG G++    +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+GRL
Sbjct: 3046 GEGEDGKLGHGNSISLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRL 3105

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGR 322
            G GD    SK  P+ V  L G+ I+Q++CG     ++ALT DG ++S+G GD G+LG G 
Sbjct: 3106 GHGDTATQSK--PKLVQSLVGQRIIQIACGSRDAQTMALTADGLVYSWGDGDFGKLGRGG 3163

Query: 323  KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
                  P+ +       R  G GV +      + CG + +LA+ ++
Sbjct: 3164 SDGCYTPLLI------DRLNGLGVVQ------IECGAQFSLALTKY 3197



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 159/328 (48%), Gaps = 52/328 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKA---LEPYKVR--SVVAGSRNSLAICDDGK--- 58
            + A G G +G+LG+G++     VC  K    L  Y ++  SV +G +++LA+  DGK   
Sbjct: 2988 LYACGEGTNGRLGLGDDSN---VCEPKPIPFLSQYVIKKVSVHSGGKHALALTQDGKVFS 3044

Query: 59   -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         + + + P  + +L + +I   A G  H  A+   G  Y WG  EYG+
Sbjct: 3045 WGEGEDGKLGHGNSISLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGR 3104

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWP 163
             G          ++++   ++ QR      + Q+A G     ++ LT +G V++WG    
Sbjct: 3105 LGHGDTATQSKPKLVQS--LVGQR------IIQIACGSRDAQTMALTADGLVYSWGD--- 3153

Query: 164  PGDIKQI--------SVPV---RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  ++          P+   R+ GL  V+ I  GA  +LAL + G +W WG  +Y +L
Sbjct: 3154 -GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQ-IECGAQFSLALTKYGEVWTWGKGDYFRL 3211

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G+     +P  V+GL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G    +
Sbjct: 3212 GHGNDHHVRKPTLVEGLRGKKVIHVAVGALHCLAVTDIGQVYAWGDNDHGQQGNGTTIVN 3271

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             K  P  V+ L    + +VSCG +HS+A
Sbjct: 3272 KK--PSLVHELDDARVNRVSCGSSHSIA 3297



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 4055 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------L 4078

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            + + P  +  L  T+IV  A GG H  A+   G  Y WG   YG+ G        T ++ 
Sbjct: 4079 SYDRPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSEDQLTPKL- 4137

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
                 I      K+I     +G   ++ +T + +VW+WG     GD  ++         +
Sbjct: 4138 -----IEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKI 4188

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P++++ L  + ++ V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 4189 PMKIESLAGLGVVKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHVRRPRKVAALQ 4248

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A TD GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I +
Sbjct: 4249 GKKIISIATGSLHCVACTDKGEVFTWGDNDEGQL--GDGTTSALQRPRLVHALQGKKITR 4306

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 4307 VACGSAHTLA 4316



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 34/286 (11%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD 115
           P +V   S   I+  A    G H LA+      Y+WG  + G+ G       +EP+  + 
Sbjct: 494 PQRVYGFSEKPIIMIASHSDGTHYLALTQDNSVYSWGNGDGGRLGHGDRAWYDEPKLIE- 552

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              ++ ++I              +A G T+S  L+  G ++TWG+        G+   + 
Sbjct: 553 --ALVEKNITF------------IACGSTYSAALSSNGELYTWGRGNYGRLGHGNSDNVM 598

Query: 172 VPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +P  V  L    V  +A G+     L +   G +++WG+  YG+LG G       P  V 
Sbjct: 599 IPTLVTALNGHMVVYVACGSGDSQTLCVTASGIVFSWGDGNYGKLGRGGCDGSKTPKIVD 658

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L  + +  +  GG  S ALT  GEVY WG+GE  RLG G+ D      P+ +++L  + 
Sbjct: 659 KLLDINVAKVYCGGQFSAALTAYGEVYTWGKGEAYRLGHGNEDHVR--YPKIIDILKTKK 716

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + ++  G  H +ALT D  I+ +GR D+G++         +P   P
Sbjct: 717 VKELCVGNLHVLALTEDQLIYGWGRNDYGQIDPALGTVVPEPTLCP 762



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 108/194 (55%), Gaps = 18/194 (9%)

Query: 136 VRQVAAGGTHSVVLTREGHVWT--WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF--- 190
           ++Q+       ++L+  G+V+   +G         +   P RV G  +  +I + +    
Sbjct: 463 IKQLCCTERALMILSVNGNVYMMYYGS--------ETQYPQRVYGFSEKPIIMIASHSDG 514

Query: 191 -HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H LAL +D ++++WGN + G+LG GD     +P  ++ L    +  IA G  +S AL+ 
Sbjct: 515 THYLALTQDNSVYSWGNGDGGRLGHGDRAWYDEPKLIEALVEKNITFIACGSTYSAALSS 574

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHI 307
           +GE+Y WGRG +GRLG G++D  + M+P  V  L G  +V V+CG   + ++ +T  G +
Sbjct: 575 NGELYTWGRGNYGRLGHGNSD--NVMIPTLVTALNGHMVVYVACGSGDSQTLCVTASGIV 632

Query: 308 FSFGRGDHGRLGYG 321
           FS+G G++G+LG G
Sbjct: 633 FSWGDGNYGKLGRG 646



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 22/244 (9%)

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAV 187
           +I+    + GTH + LT++  V++WG         GD      P  ++ L  + +  IA 
Sbjct: 505 IIMIASHSDGTHYLALTQDNSVYSWGNGDGGRLGHGDRAWYDEPKLIEALVEKNITFIAC 564

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G+ ++ AL  +G L+ WG   YG+LG G++     P  V  L+G  +V +A G   S  L
Sbjct: 565 GSTYSAALSSNGELYTWGRGNYGRLGHGNSDNVMIPTLVTALNGHMVVYVACGSGDSQTL 624

Query: 248 --TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
             T  G V+ WG G +G+LG G  D S    P+ V+ L   ++ +V CGG  S ALT  G
Sbjct: 625 CVTASGIVFSWGDGNYGKLGRGGCDGSK--TPKIVDKLLDINVAKVYCGGQFSAALTAYG 682

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++++G+G+  RLG+G +     P  +           D +  + + +L   G  H LA+
Sbjct: 683 EVYTWGKGEAYRLGHGNEDHVRYPKII-----------DILKTKKVKELCV-GNLHVLAL 730

Query: 366 VEWQ 369
            E Q
Sbjct: 731 TEDQ 734



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P+  + LS L  V +  G     A+T DG+VY  G 
Sbjct: 3953 GAIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVYATGY 4012

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S MVP  +  +    +  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 4013 GAVGRLGIGGTD--SVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 4070

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G +++  +P  +   +       + VD       +ACGG H+ AI
Sbjct: 4071 KLGHGNRLSYDRPKLIEELL-----GTEIVD-------IACGGHHSAAI 4107



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 32/270 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +    S+ +WG+G+ G+LG G+    +   +++AL    +  +  GS  S A+  +G+  
Sbjct: 520 LTQDNSVYSWGNGDGGRLGHGDRAWYDEPKLIEALVEKNITFIACGSTYSAALSSNGELY 579

Query: 61  T--------------EN--IPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T              +N  IP+ V AL+   +V  A G      L V   G  ++WG   
Sbjct: 580 TWGRGNYGRLGHGNSDNVMIPTLVTALNGHMVVYVACGSGDSQTLCVTASGIVFSWGDGN 639

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YG+ G        T +I+ + + I         V +V  GG  S  LT  G V+TWG+  
Sbjct: 640 YGKLGRGGCDGSKTPKIVDKLLDIN--------VAKVYCGGQFSAALTAYGEVYTWGKGE 691

Query: 161 --PWPPGDIKQISVP--VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G+   +  P  + +   ++VK + VG  H LAL ED  ++ WG N+YGQ+    
Sbjct: 692 AYRLGHGNEDHVRYPKIIDILKTKKVKELCVGNLHVLALTEDQLIYGWGRNDYGQIDPAL 751

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                +P     LSG  ++ +A G   S A
Sbjct: 752 GTVVPEPTLCPTLSGKNVIGLACGPTQSFA 781



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 16/171 (9%)

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +  A++ WG N+  QLG         P+  + LS L  V IA G      ++ +G++Y  
Sbjct: 2932 QHSAVYVWGLNDKDQLGGLKGSKIKLPVYSEVLSKLKPVHIAGGSKTLFVVSQEGKLYAC 2991

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGD 314
            G G +GRLG GD+  S+   P+ +  L+   I +VS   GG H++ALT+DG +FS+G G+
Sbjct: 2992 GEGTNGRLGLGDD--SNVCEPKPIPFLSQYVIKKVSVHSGGKHALALTQDGKVFSWGEGE 3049

Query: 315  HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG+G  ++  +P  +           + +  + I + +ACG  H+ AI
Sbjct: 3050 DGKLGHGNSISLDKPRLI-----------ESLKSKRI-RDIACGSGHSAAI 3088



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 50/257 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+   +    +V++L   ++  +  GSR       D +T 
Sbjct: 3088 ITSSGELYTWGLGEYGRLGHGDTATQSKPKLVQSLVGQRIIQIACGSR-------DAQT- 3139

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      +A+   G  Y+WG  ++G+ G        T  ++
Sbjct: 3140 --------------------------MALTADGLVYSWGDGDFGKLGRGGSDGCYTPLLI 3173

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V Q+  G   S+ LT+ G VWTWG+        G+   +  P  V
Sbjct: 3174 DR--------LNGLGVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV 3225

Query: 177  QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL   K+I  AVGA H LA+ + G ++AWG+N++GQ G G T    +P  V  L    +
Sbjct: 3226 EGLRGKKVIHVAVGALHCLAVTDIGQVYAWGDNDHGQQGNGTTIVNKKPSLVHELDDARV 3285

Query: 235  VDIAAGGWHSTA--LTD 249
              ++ G  HS A  LTD
Sbjct: 3286 NRVSCGSSHSIAWVLTD 3302


>gi|134288898|ref|NP_034548.2| E3 ubiquitin-protein ligase HERC2 [Mus musculus]
 gi|341941077|sp|Q4U2R1.3|HERC2_MOUSE RecName: Full=E3 ubiquitin-protein ligase HERC2; AltName: Full=HECT
            domain and RCC1-like domain-containing protein 2
          Length = 4836

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3955 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4014

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4015 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4074

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4075 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4126

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4127 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4186

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4244

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4245 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4300

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4301 Q--GKKVNR------VACGSAHTLA---WSTSK 4322



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 3039

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 3040 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 3096

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3097 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3156

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3157 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3214

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3215 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3262

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3263 VAVGALHCLAVTD 3275



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPTALP-----------GLDSKHIVG-IACGPAQSFA 776



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 443 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4056 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4083

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4084 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4139

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4140 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4186

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4246

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4247 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4304

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4305 VNRVACGSAHTLA 4317



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPTALPGLDSKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3954 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4013

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4014 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4073

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4074 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4128



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|91202557|emb|CAJ72196.1| hypothetical protein kustd1451 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1413

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 148/281 (52%), Gaps = 22/281 (7%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           D  T   + P QV+ L  T ++  A G +H +A+   G  +AWG NE GQ G+       
Sbjct: 177 DESTTNRSTPVQVSGL--TDVIAIAGGAYHTIALKSDGTVWAWGNNEGGQLGDGSTTDRS 234

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQIS 171
           T          P + +    V  +A G  H++ L  +G VW WG         G     S
Sbjct: 235 T----------PVQVSGLTDVIAIAGGYAHTIALKSDGTVWAWGDNEGGRLGDGSTTNRS 284

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +PV+V GL  V  IA G  H +AL+ DG +WAWG+NE GQLG G T  RS P+ V GL+ 
Sbjct: 285 IPVKVGGLSDVIAIAGGNAHTIALKSDGTVWAWGDNEGGQLGDGSTTNRSTPVKVSGLA- 343

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             ++ IA G  H+  L  DG V+ WG  E G+L  GD   +++  P +V+ LA  D++ +
Sbjct: 344 -DVIAIAGGYSHTIVLRSDGTVWTWGHNEGGQL--GDGSTTNRSTPVQVSGLA--DVIAI 398

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + G  H++A+  DG ++++G   +G+LG G  + +  P++V
Sbjct: 399 AGGVYHTIAVKSDGTMWAWGYNWYGQLGDGTTINSSTPVQV 439



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/281 (35%), Positives = 143/281 (50%), Gaps = 22/281 (7%)

Query: 56   DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
            DG T   + P QV+ L  T ++  A G +H +A+      +AWG N YGQ G+       
Sbjct: 1073 DGTTINRSTPVQVSGL--TDVIAIAGGDYHTIALKSDNTVWAWGSNSYGQLGD------- 1123

Query: 116  TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
             G I  R I  P      +I   +A G  H++ L  +G VW WG         G     S
Sbjct: 1124 -GTITNRSIPTPVTYLTNIIA--IAGGYVHTIALKSDGTVWAWGYNGYGQLGDGSTTNRS 1180

Query: 172  VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
             PV+V GL  V  IA    H +AL+ DG +WAWG N YGQLG G T  RS P+ V GL+ 
Sbjct: 1181 TPVQVSGLTDVIAIAGEYVHTVALKSDGTVWAWGYNGYGQLGDGSTTNRSTPVQVSGLT- 1239

Query: 232  LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
              ++ IA G  H+ AL  DG V+ WG    G+L  GD    +++ P +V+ L   D + +
Sbjct: 1240 -DVIAIAGGYVHTIALKSDGTVWTWGWNNSGQL--GDGTTINRLTPVQVSGL--TDAIAI 1294

Query: 292  SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            + G  H++AL  D  ++++G   +G+LG G  +    P++V
Sbjct: 1295 AGGDYHTIALKSDNTVWAWGSNSYGQLGDGTTINRLTPVQV 1335



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 166/346 (47%), Gaps = 40/346 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++  WG+  +GQLG  +   R     V  L    V ++  G+ +++A+            
Sbjct: 163 AVWTWGANWNGQLGDESTTNRSTPVQVSGLT--DVIAIAGGAYHTIALKSDGTVWAWGNN 220

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   + P QV+ L  T ++  A G  H +A+   G  +AWG NE G+ G+ 
Sbjct: 221 EGGQLGDGSTTDRSTPVQVSGL--TDVIAIAGGYAHTIALKSDGTVWAWGDNEGGRLGD- 277

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R I  P +      V  +A G  H++ L  +G VW WG         G
Sbjct: 278 -------GSTTNRSI--PVKVGGLSDVIAIAGGNAHTIALKSDGTVWAWGDNEGGQLGDG 328

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S PV+V GL  V  IA G  H + L+ DG +W WG+NE GQLG G T  RS P+ 
Sbjct: 329 STTNRSTPVKVSGLADVIAIAGGYSHTIVLRSDGTVWTWGHNEGGQLGDGSTTNRSTPVQ 388

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   ++ IA G +H+ A+  DG ++ WG   +G+LG G    SS   P +VN L  
Sbjct: 389 VSGLA--DVIAIAGGVYHTIAVKSDGTMWAWGYNWYGQLGDGTTINSST--PVQVNGL-- 442

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            D++ ++ G  H++A+  DG ++++G   +G+LG G       P +
Sbjct: 443 TDVIAIAGGYYHTIAMKSDGAVWTWGFNYYGQLGDGSITNRSTPAQ 488



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 144/281 (51%), Gaps = 22/281 (7%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T   + P QV+ L  T  +  A G +H +A+   G  + WG N  GQ G+       
Sbjct: 625 DGSTTDSSTPVQVSGL--TDAIAIAGGVYHTIALKSDGTVWTWGWNNSGQLGD------- 675

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQIS 171
            G  + R    P +      V  +A G  H++ L  +G VWTWG  +      G     S
Sbjct: 676 -GTTINRST--PVQVIGLTDVIAIAGGDYHTIALKSDGTVWTWGFNYYGQLGGGATTNRS 732

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+V+GL  +  IA G  H++AL+ DG +WAWG N YGQLG G T     P+ V GL+ 
Sbjct: 733 TPVQVKGLADIIAIAGGYVHSIALKSDGTVWAWGYNGYGQLGDGSTTDHLTPVQVSGLT- 791

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             ++ IA G  H+ AL  DG V+ WG  E G+LG G    SS   P +V+ L   D++ V
Sbjct: 792 -DIIAIAGGYIHTIALKSDGTVWAWGHNEGGQLGDGTTTNSST--PVQVSGL--TDVIAV 846

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +    H++AL  DG ++++GR  +G+LG G       P++V
Sbjct: 847 TARLYHTIALKSDGTVWTWGRNIYGQLGDGSTTERSLPVQV 887



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 134/259 (51%), Gaps = 20/259 (7%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           Q + G +H L +   G  + WG N  GQ G+E      T          P + +    V 
Sbjct: 147 QISAGAYHTLTLKPDGAVWTWGANWNGQLGDESTTNRST----------PVQVSGLTDVI 196

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            +A G  H++ L  +G VW WG         G     S PV+V GL  V  IA G  H +
Sbjct: 197 AIAGGAYHTIALKSDGTVWAWGNNEGGQLGDGSTTDRSTPVQVSGLTDVIAIAGGYAHTI 256

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+ DG +WAWG+NE G+LG G T  RS P+ V GLS   ++ IA G  H+ AL  DG V
Sbjct: 257 ALKSDGTVWAWGDNEGGRLGDGSTTNRSIPVKVGGLS--DVIAIAGGNAHTIALKSDGTV 314

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG  E G+L  GD   +++  P KV+ LA  D++ ++ G +H++ L  DG ++++G  
Sbjct: 315 WAWGDNEGGQL--GDGSTTNRSTPVKVSGLA--DVIAIAGGYSHTIVLRSDGTVWTWGHN 370

Query: 314 DHGRLGYGRKVTTGQPMEV 332
           + G+LG G       P++V
Sbjct: 371 EGGQLGDGSTTNRSTPVQV 389



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 10/200 (5%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPW--PPGD--IKQISVPVRVQGLEQVKLIAVGAFHN 192
            Q++AG  H++ L  +G VWTWG  W    GD      S PV+V GL  V  IA GA+H 
Sbjct: 146 SQISAGAYHTLTLKPDGAVWTWGANWNGQLGDESTTNRSTPVQVSGLTDVIAIAGGAYHT 205

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           +AL+ DG +WAWGNNE GQLG G T  RS P+ V GL+   ++ IA G  H+ AL  DG 
Sbjct: 206 IALKSDGTVWAWGNNEGGQLGDGSTTDRSTPVQVSGLT--DVIAIAGGYAHTIALKSDGT 263

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG  E GRL  GD   +++ +P KV  L+  D++ ++ G  H++AL  DG ++++G 
Sbjct: 264 VWAWGDNEGGRL--GDGSTTNRSIPVKVGGLS--DVIAIAGGNAHTIALKSDGTVWAWGD 319

Query: 313 GDHGRLGYGRKVTTGQPMEV 332
            + G+LG G       P++V
Sbjct: 320 NEGGQLGDGSTTNRSTPVKV 339



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 155/320 (48%), Gaps = 40/320 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG+ E GQLG G+  +R     V  L    V ++  G  +++A+            
Sbjct: 213 TVWAWGNNEGGQLGDGSTTDRSTPVQVSGLT--DVIAIAGGYAHTIALKSDGTVWAWGDN 270

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   +IP +V  LS+  ++  A G  H +A+   G  +AWG NE GQ G+ 
Sbjct: 271 EGGRLGDGSTTNRSIPVKVGGLSD--VIAIAGGNAHTIALKSDGTVWAWGDNEGGQLGDG 328

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                 T          P + +    V  +A G +H++VL  +G VWTWG         G
Sbjct: 329 STTNRST----------PVKVSGLADVIAIAGGYSHTIVLRSDGTVWTWGHNEGGQLGDG 378

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S PV+V GL  V  IA G +H +A++ DG +WAWG N YGQLG G T   S P+ 
Sbjct: 379 STTNRSTPVQVSGLADVIAIAGGVYHTIAVKSDGTMWAWGYNWYGQLGDGTTINSSTPVQ 438

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   ++ IA G +H+ A+  DG V+ WG   +G+L  GD   +++  P + +L   
Sbjct: 439 VNGLT--DVIAIAGGYYHTIAMKSDGAVWTWGFNYYGQL--GDGSITNRSTPAQRSLSGM 494

Query: 286 EDIV--QVSCGGTHSVALTR 303
           + +    V+ G    V+L+ 
Sbjct: 495 KSVATPTVTTGSATCVSLSS 514



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 134/260 (51%), Gaps = 20/260 (7%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q + G +H L +   G  +A+G N   Q G+       T          P + +     
Sbjct: 594 TQISAGAYHTLTLKPDGTVWAYGANWNSQLGDGSTTDSST----------PVQVSGLTDA 643

Query: 137 RQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQI--SVPVRVQGLEQVKLIAVGAFHN 192
             +A G  H++ L  +G VWTWG       GD   I  S PV+V GL  V  IA G +H 
Sbjct: 644 IAIAGGVYHTIALKSDGTVWTWGWNNSGQLGDGTTINRSTPVQVIGLTDVIAIAGGDYHT 703

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           +AL+ DG +W WG N YGQLG G T  RS P+ V+GL+   ++ IA G  HS AL  DG 
Sbjct: 704 IALKSDGTVWTWGFNYYGQLGGGATTNRSTPVQVKGLA--DIIAIAGGYVHSIALKSDGT 761

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG   +G+L  GD   +  + P +V+ L   DI+ ++ G  H++AL  DG ++++G 
Sbjct: 762 VWAWGYNGYGQL--GDGSTTDHLTPVQVSGL--TDIIAIAGGYIHTIALKSDGTVWAWGH 817

Query: 313 GDHGRLGYGRKVTTGQPMEV 332
            + G+LG G    +  P++V
Sbjct: 818 NEGGQLGDGTTTNSSTPVQV 837



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 161/352 (45%), Gaps = 43/352 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
            ++ A G+  +GQLG G    R     V  L    V ++  G  +++A+            
Sbjct: 1059 TVWACGANWNGQLGDGTTINRSTPVQVSGLT--DVIAIAGGDYHTIALKSDNTVWAWGSN 1116

Query: 54   ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG     +IP+ V  L+N  I+  A G  H +A+   G  +AWG N YGQ G+ 
Sbjct: 1117 SYGQLGDGTITNRSIPTPVTYLTN--IIAIAGGYVHTIALKSDGTVWAWGYNGYGQLGDG 1174

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  T          P + +    V  +A    H+V L  +G VW WG         G
Sbjct: 1175 STTNRST----------PVQVSGLTDVIAIAGEYVHTVALKSDGTVWAWGYNGYGQLGDG 1224

Query: 166  DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 S PV+V GL  V  IA G  H +AL+ DG +W WG N  GQLG G T  R  P+ 
Sbjct: 1225 STTNRSTPVQVSGLTDVIAIAGGYVHTIALKSDGTVWTWGWNNSGQLGDGTTINRLTPVQ 1284

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            V GL+    + IA G +H+ AL  D  V+ WG   +G+LG  D    +++ P +V+ L  
Sbjct: 1285 VSGLT--DAIAIAGGDYHTIALKSDNTVWAWGSNSYGQLG--DGTTINRLTPVQVSGL-- 1338

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG---YGRKVTTGQPMEVPI 334
             D + ++ G  H++AL  D  ++++G   +G+LG       +T  Q +  PI
Sbjct: 1339 TDAIAIAGGDYHTIALKSDNTVWAWGSNSYGQLGDVSTANSLTPAQCLLSPI 1390



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 136/268 (50%), Gaps = 22/268 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T   + P QV  L  T ++  A G +H +A+   G  + WG N YGQ G        
Sbjct: 675 DGTTINRSTPVQVIGL--TDVIAIAGGDYHTIALKSDGTVWTWGFNYYGQLGG------- 725

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
            G    R   +  +    +I   +A G  HS+ L  +G VW WG         G      
Sbjct: 726 -GATTNRSTPVQVKGLADIIA--IAGGYVHSIALKSDGTVWAWGYNGYGQLGDGSTTDHL 782

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+V GL  +  IA G  H +AL+ DG +WAWG+NE GQLG G T   S P+ V GL+ 
Sbjct: 783 TPVQVSGLTDIIAIAGGYIHTIALKSDGTVWAWGHNEGGQLGDGTTTNSSTPVQVSGLT- 841

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             ++ + A  +H+ AL  DG V+ WGR  +G+L  GD   + + +P  V ++   D++ +
Sbjct: 842 -DVIAVTARLYHTIALKSDGTVWTWGRNIYGQL--GDGSTTERSLP--VQVIGLTDVIAI 896

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           + G  H++AL  DG ++++G   + +LG
Sbjct: 897 AGGYYHTIALKSDGAVWAWGYNGNNQLG 924



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 131/259 (50%), Gaps = 20/259 (7%)

Query: 78   QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
            Q + G +H L +   G  +A G N  GQ G+        G  + R    P + +    V 
Sbjct: 1043 QISAGAYHTLTLKPDGTVWACGANWNGQLGD--------GTTINRS--TPVQVSGLTDVI 1092

Query: 138  QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
             +A G  H++ L  +  VW WG         G I   S+P  V  L  +  IA G  H +
Sbjct: 1093 AIAGGDYHTIALKSDNTVWAWGSNSYGQLGDGTITNRSIPTPVTYLTNIIAIAGGYVHTI 1152

Query: 194  ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            AL+ DG +WAWG N YGQLG G T  RS P+ V GL+   ++ IA    H+ AL  DG V
Sbjct: 1153 ALKSDGTVWAWGYNGYGQLGDGSTTNRSTPVQVSGLT--DVIAIAGEYVHTVALKSDGTV 1210

Query: 254  YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
            + WG   +G+L  GD   +++  P +V+ L   D++ ++ G  H++AL  DG ++++G  
Sbjct: 1211 WAWGYNGYGQL--GDGSTTNRSTPVQVSGL--TDVIAIAGGYVHTIALKSDGTVWTWGWN 1266

Query: 314  DHGRLGYGRKVTTGQPMEV 332
            + G+LG G  +    P++V
Sbjct: 1267 NSGQLGDGTTINRLTPVQV 1285



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 139/302 (46%), Gaps = 38/302 (12%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
            + S  ++ AWGS   GQLG G    R     V  L    + ++  G  +++A+       
Sbjct: 1104 LKSDNTVWAWGSNSYGQLGDGTITNRSIPTPVTYLT--NIIAIAGGYVHTIALKSDGTVW 1161

Query: 54   ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       DG T   + P QV+ L  T ++  A    H +A+   G  +AWG N YG
Sbjct: 1162 AWGYNGYGQLGDGSTTNRSTPVQVSGL--TDVIAIAGEYVHTVALKSDGTVWAWGYNGYG 1219

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPW 162
            Q G+       T          P + +    V  +A G  H++ L  +G VWTWG     
Sbjct: 1220 QLGDGSTTNRST----------PVQVSGLTDVIAIAGGYVHTIALKSDGTVWTWGWNNSG 1269

Query: 163  PPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              GD   I+   PV+V GL     IA G +H +AL+ D  +WAWG+N YGQLG G T  R
Sbjct: 1270 QLGDGTTINRLTPVQVSGLTDAIAIAGGDYHTIALKSDNTVWAWGSNSYGQLGDGTTINR 1329

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
              P+ V GL+    + IA G +H+ AL  D  V+ WG   +G+L  GD   ++ + P + 
Sbjct: 1330 LTPVQVSGLT--DAIAIAGGDYHTIALKSDNTVWAWGSNSYGQL--GDVSTANSLTPAQC 1385

Query: 281  NL 282
             L
Sbjct: 1386 LL 1387



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 131/291 (45%), Gaps = 36/291 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++  WG    GQLG G    R     V+ +    V ++  G  +++A+  DG        
Sbjct: 661 TVWTWGWNNSGQLGDGTTINRS--TPVQVIGLTDVIAIAGGDYHTIALKSDGTVWTWGFN 718

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   + P QV  L++  I+  A G  H +A+   G  +AWG N YGQ G+ 
Sbjct: 719 YYGQLGGGATTNRSTPVQVKGLAD--IIAIAGGYVHSIALKSDGTVWAWGYNGYGQLGDG 776

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                        D + P + +    +  +A G  H++ L  +G VW WG         G
Sbjct: 777 STT----------DHLTPVQVSGLTDIIAIAGGYIHTIALKSDGTVWAWGHNEGGQLGDG 826

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S PV+V GL  V  +    +H +AL+ DG +W WG N YGQLG G T  RS P+ 
Sbjct: 827 TTTNSSTPVQVSGLTDVIAVTARLYHTIALKSDGTVWTWGRNIYGQLGDGSTTERSLPVQ 886

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           V GL+   ++ IA G +H+ AL  DG V+ WG   + +LG      SS  V
Sbjct: 887 VIGLT--DVIAIAGGYYHTIALKSDGAVWAWGYNGNNQLGNWSTKNSSTPV 935



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 112/200 (56%), Gaps = 10/200 (5%)

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQI--SVPVRVQGLEQVKLIAVGAFHN 192
             Q++AG  H++ L  +G VW  G  W    GD   I  S PV+V GL  V  IA G +H 
Sbjct: 1042 SQISAGAYHTLTLKPDGTVWACGANWNGQLGDGTTINRSTPVQVSGLTDVIAIAGGDYHT 1101

Query: 193  LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
            +AL+ D  +WAWG+N YGQLG G    RS P PV  L+   ++ IA G  H+ AL  DG 
Sbjct: 1102 IALKSDNTVWAWGSNSYGQLGDGTITNRSIPTPVTYLT--NIIAIAGGYVHTIALKSDGT 1159

Query: 253  VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
            V+ WG   +G+L  GD   +++  P +V+ L   D++ ++    H+VAL  DG ++++G 
Sbjct: 1160 VWAWGYNGYGQL--GDGSTTNRSTPVQVSGL--TDVIAIAGEYVHTVALKSDGTVWAWGY 1215

Query: 313  GDHGRLGYGRKVTTGQPMEV 332
              +G+LG G       P++V
Sbjct: 1216 NGYGQLGDGSTTNRSTPVQV 1235


>gi|148689921|gb|EDL21868.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 2, isoform CRA_a [Mus
            musculus]
          Length = 4902

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 4021 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4080

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4081 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4140

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4141 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4192

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4193 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4252

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4253 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4310

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4366

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4367 Q--GKKVNR------VACGSAHTLA---WSTSK 4388



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 522 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 581

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 582 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 626

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 627 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 686

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 687 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 746

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 747 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 804

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 805 NDQCQHFDTLRVTKPEPTALP-----------GLDSKHIVG-IACGPAQSFA 844



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 3048 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 3105

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 3106 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 3162

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3163 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3222

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3223 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3280

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3281 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3328

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3329 VAVGALHCLAVTD 3341



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 511 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 550

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 551 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 610

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 611 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 670

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 671 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 728

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 729 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 777

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 778 KKVID-VAAGSTHCLALTE 795



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3080 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3135

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3136 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3195

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3196 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3240

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3241 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3296

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3297 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3356

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3357 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3392



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4122 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4149

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4150 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4205

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4206 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4252

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4253 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4312

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4313 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4370

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4371 VNRVACGSAHTLA 4383



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 579 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 638

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 639 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 698

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 699 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 750

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 751 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 810

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 811 FDTLRVTKPEPTALPGLDSKHIVGIACGPAQSFA 844



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 4020 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4079

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4080 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4139

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4140 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4194



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3181 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3240

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3241 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3300

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3301 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3352

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3353 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3390


>gi|148689922|gb|EDL21869.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 2, isoform CRA_b [Mus
            musculus]
          Length = 4841

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3960 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4019

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4020 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4079

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4080 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4131

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4132 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4191

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4192 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4249

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4250 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4305

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4306 Q--GKKVNR------VACGSAHTLA---WSTSK 4327



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2987 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 3044

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 3045 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 3101

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3102 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3161

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3162 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3219

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3220 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3267

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3268 VAVGALHCLAVTD 3280



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 459 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 518

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 519 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 563

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 564 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 623

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 624 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 683

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 684 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 741

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 742 NDQCQHFDTLRVTKPEPTALP-----------GLDSKHIVG-IACGPAQSFA 781



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 448 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 487

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 488 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 547

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 548 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 607

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 608 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 665

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 666 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 714

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 715 KKVID-VAAGSTHCLALTE 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3019 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3074

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3075 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3134

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3135 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3179

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3180 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3235

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3236 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3295

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3296 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3331



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4061 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4088

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4089 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4144

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4145 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4191

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4192 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4251

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4252 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4309

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4310 VNRVACGSAHTLA 4322



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 516 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 575

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 576 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 635

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 636 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 687

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 688 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 747

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 748 FDTLRVTKPEPTALPGLDSKHIVGIACGPAQSFA 781



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3959 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4018

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4019 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4078

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4079 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4133



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3120 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3179

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3180 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3239

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3240 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3291

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3292 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3329


>gi|444917133|ref|ZP_21237237.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444711259|gb|ELW52206.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 1081

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/255 (43%), Positives = 140/255 (54%), Gaps = 23/255 (9%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H L V   G  +AWG N  GQ GE    +  T          P +      V  VAAG T
Sbjct: 59  HSLYVTPAGTVWAWGANAQGQLGEGSTLQHST----------PTQVVGLTGVTAVAAGNT 108

Query: 145 HSVVLTREGHVWTWGQPWPP--GD-IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
           HS+ L  EG VWTWG       GD + Q SVP +V GL  V  IA G  H+LAL  +GA+
Sbjct: 109 HSMALREEGTVWTWGTNTDGQLGDGVSQRSVPAQVAGLTGVTAIAAGNLHSLAL-INGAV 167

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           WAWGNN  GQLG G +  RS P  V GL+   +V IAAG +HS AL  DG V+ WG    
Sbjct: 168 WAWGNNTTGQLGDGSSTSRSTPAKVAGLT--EVVAIAAGDFHSLALKRDGTVWAWGGNYS 225

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA---LTRDGHIFSFGRGDHGRL 318
           G+LG G  D  S+  P +V+ L G  IV ++ GG+HSVA    T  G ++++G   +G+L
Sbjct: 226 GQLGDGTLD--SRSTPVRVSGLTG--IVALAGGGSHSVAASSTTLGGKVWAWGDNTYGQL 281

Query: 319 GYGRKVTTGQPMEVP 333
           G G  V++  P+EVP
Sbjct: 282 GNGGDVSSLLPLEVP 296



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 171/354 (48%), Gaps = 53/354 (14%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR------------------- 48
           + WG+   GQLG G++        V+AL P +V S+ AG+                    
Sbjct: 371 LGWGANGSGQLGNGSSS-------VRAL-PGRVPSLTAGASLAAGDHHVFLRQADGSVWA 422

Query: 49  ---NSLAICDDGKTKTENIPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
              N+     DG   +   P ++++ L++ + + A+   +H LA+   G  +AWG N YG
Sbjct: 423 WGDNTYGQLGDGTLVSRPAPVRLSSTLTSVRALSAS--SYHSLALRSDGTVWAWGDNAYG 480

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----- 159
           Q G+    +  +          P +        ++AAG  HS+ L  +G VWTWG     
Sbjct: 481 QLGDTSGGRRPS----------PAQVPGVAGATEIAAGTYHSLALRSDGTVWTWGDNSYG 530

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           Q       +    P  V GL  +  +A G FH+LAL   G +WAWG+N YGQLG G T  
Sbjct: 531 QLGAGATPRGPRAPAVVPGLAVITHVAAGLFHSLALDSSGQVWAWGDNVYGQLGDGSTTS 590

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P  V GL    +  I AG  +S AL  DG V+ WG   +G+L  GD   +++ VP +
Sbjct: 591 RNVPGRVSGLPA-GIQAIVAGPSYSVALGADGSVWTWGENSNGQL--GDGTTTARPVPAR 647

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           V+L A   +V +S  G+H+VAL   G ++++GR   G+LG G  V+   P  VP
Sbjct: 648 VSLPA--TLVALSTRGSHTVALDTTGMLWAWGRNVSGQLGNGTLVSESTPRRVP 699



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 164/350 (46%), Gaps = 36/350 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +T  + AWG    GQLG G          V +    +V+   +G R + A+  DG   
Sbjct: 667 LDTTGMLWAWGRNVSGQLGNGTLVSESTPRRVPSFA--RVQGFASGLRTTFALRADGTVW 724

Query: 60  -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                         T   P  V A+   + V  A G  H LAV   G  +++G N  GQ 
Sbjct: 725 AWGDNSLGQLGNGATSASPVPVQAVGYPRTVPLASGAQHVLAVSSDGSVFSFGSNSRGQL 784

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G E      + R L           P+ I   VAAG   S+ L+ +G VW WG       
Sbjct: 785 GYEGSATQTSPRWL---------TGPECI-EAVAAGALFSLALSCDGGVWAWGDNGSGQL 834

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G +   + P RV GL  V  IA G+ H LA++ DG +WAWG N  GQLG G T  R+ 
Sbjct: 835 GDGAVTARTAPARVPGLAHVVAIAAGSDHALAVRADGTVWAWGANGSGQLGDGTTTSRAV 894

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V+ L  + +V +A G  HS A+  DG V+ WG    G+LG  D   +S+ +P  V+ 
Sbjct: 895 PMQVKEL--VDVVAVAGGSGHSLAVRADGTVWAWGANGSGQLG--DGTTTSRTLPVFVST 950

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L+G  +  ++ G  HS+AL   G ++++G    G+LG G   +  +P++V
Sbjct: 951 LSG--VQAIASGAQHSLALAEGGVVWAWGANGSGQLGDGTTTSRTRPVQV 998



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 152/291 (52%), Gaps = 29/291 (9%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G +    +P +V +L  T     A G  H       G  +AWG N YGQ G+       
Sbjct: 383 NGSSSVRALPGRVPSL--TAGASLAAGDHHVFLRQADGSVWAWGDNTYGQLGD------- 433

Query: 116 TGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--- 171
            G ++ R    P R +  L  VR ++A   HS+ L  +G VW WG     G +   S   
Sbjct: 434 -GTLVSRPA--PVRLSSTLTSVRALSASSYHSLALRSDGTVWAWGDN-AYGQLGDTSGGR 489

Query: 172 --VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ--PRSQPIPVQ 227
              P +V G+     IA G +H+LAL+ DG +W WG+N YGQLG G T   PR+ P  V 
Sbjct: 490 RPSPAQVPGVAGATEIAAGTYHSLALRSDGTVWTWGDNSYGQLGAGATPRGPRA-PAVVP 548

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+ +T   +AAG +HS AL   G+V+ WG   +G+LG  D   +S+ VP +V+ L    
Sbjct: 549 GLAVIT--HVAAGLFHSLALDSSGQVWAWGDNVYGQLG--DGSTTSRNVPGRVSGLP-AG 603

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           I  +  G ++SVAL  DG ++++G   +G+LG G   TT +P+   +++PA
Sbjct: 604 IQAIVAGPSYSVALGADGSVWTWGENSNGQLGDG--TTTARPVPARVSLPA 652



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 158/322 (49%), Gaps = 41/322 (12%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+     +G T   + P+QV  L  T +   A G  H +A+ ++G  + WG N  GQ G+
Sbjct: 75  NAQGQLGEGSTLQHSTPTQVVGL--TGVTAVAAGNTHSMALREEGTVWTWGTNTDGQLGD 132

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
              ++            +P + A    V  +AAG  HS+ L   G VW WG         
Sbjct: 133 GVSQRS-----------VPAQVAGLTGVTAIAAGNLHSLALI-NGAVWAWGNNTTGQLGD 180

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G     S P +V GL +V  IA G FH+LAL+ DG +WAWG N  GQLG G    RS P+
Sbjct: 181 GSSTSRSTPAKVAGLTEVVAIAAGDFHSLALKRDGTVWAWGGNYSGQLGDGTLDSRSTPV 240

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDD---GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            V GL+G  +V +A GG HS A +     G+V+ WG   +G+LG G +   S ++P +V 
Sbjct: 241 RVSGLTG--IVALAGGGSHSVAASSTTLGGKVWAWGDNTYGQLGNGGD--VSSLLPLEVP 296

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            L    +V ++ G +HS+AL  D  ++++  GD+ +    +  T+ Q   VP+ +    +
Sbjct: 297 GL--TQVVALASGTSHSLALRGDDSVWAW--GDNAQAQTAQTGTSVQ--RVPVRVSGVSD 350

Query: 342 AGDGVDRRWIAKLVACGGRHTL 363
                     A+ +ACG   +L
Sbjct: 351 ----------AQALACGNAFSL 362



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 153/334 (45%), Gaps = 47/334 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGI---GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI-CD- 55
            ++S  S+ ++GS   GQLG           W+       P  + +V AG+  SLA+ CD 
Sbjct: 767  VSSDGSVFSFGSNSRGQLGYEGSATQTSPRWLT-----GPECIEAVAAGALFSLALSCDG 821

Query: 56   --------------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                          DG       P++V  L++  +V  A G  H LAV   G  +AWG N
Sbjct: 822  GVWAWGDNGSGQLGDGAVTARTAPARVPGLAH--VVAIAAGSDHALAVRADGTVWAWGAN 879

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
              GQ G+        G    R   +P +    + V  VA G  HS+ +  +G VW WG  
Sbjct: 880  GSGQLGD--------GTTTSR--AVPMQVKELVDVVAVAGGSGHSLAVRADGTVWAWGAN 929

Query: 161  ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                   G     ++PV V  L  V+ IA GA H+LAL E G +WAWG N  GQLG G T
Sbjct: 930  GSGQLGDGTTTSRTLPVFVSTLSGVQAIASGAQHSLALAEGGVVWAWGANGSGQLGDGTT 989

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              R++P+ V GLSG+    + AG   S ALT  G+V+ WG    G+L  GD   +S+  P
Sbjct: 990  TSRTRPVQVSGLSGVQ--GLVAGASFSLALT-PGKVWSWGNNSAGQL--GDGTLNSRSQP 1044

Query: 278  QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
                 L     V +S G  H+V L  D    S+G
Sbjct: 1045 GAGPTL--SSFVALSAGAQHTVVLRSDDSFLSWG 1076



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 191/428 (44%), Gaps = 85/428 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S+  + AWG    GQLG G+   R     V  L P  ++++VAG   S+A+       
Sbjct: 566 LDSSGQVWAWGDNVYGQLGDGSTTSRNVPGRVSGL-PAGIQAIVAGPSYSVALGADGSVW 624

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T    +P++V+  +   +V  +  G H +A+D  G  +AWG N  G
Sbjct: 625 TWGENSNGQLGDGTTTARPVPARVSLPAT--LVALSTRGSHTVALDTTGMLWAWGRNVSG 682

Query: 105 QCG-------EEPERKDDTGRI------------LRRDIVI------------------- 126
           Q G         P R     R+            LR D  +                   
Sbjct: 683 QLGNGTLVSESTPRRVPSFARVQGFASGLRTTFALRADGTVWAWGDNSLGQLGNGATSAS 742

Query: 127 --PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
             P +         +A+G  H + ++ +G V+++G     Q    G   Q S P  + G 
Sbjct: 743 PVPVQAVGYPRTVPLASGAQHVLAVSSDGSVFSFGSNSRGQLGYEGSATQTS-PRWLTGP 801

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           E ++ +A GA  +LAL  DG +WAWG+N  GQLG G    R+ P  V GL+   +V IAA
Sbjct: 802 ECIEAVAAGALFSLALSCDGGVWAWGDNGSGQLGDGAVTARTAPARVPGLA--HVVAIAA 859

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  H+ A+  DG V+ WG    G+LG  D   +S+ VP +V  L   D+V V+ G  HS+
Sbjct: 860 GSDHALAVRADGTVWAWGANGSGQLG--DGTTTSRAVPMQVKELV--DVVAVAGGSGHSL 915

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+  DG ++++G    G+LG G   TT + + V ++  +   A            +A G 
Sbjct: 916 AVRADGTVWAWGANGSGQLGDG--TTTSRTLPVFVSTLSGVQA------------IASGA 961

Query: 360 RHTLAIVE 367
           +H+LA+ E
Sbjct: 962 QHSLALAE 969



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 163/362 (45%), Gaps = 44/362 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWG+   GQLG G+  +      V  L    V +V AG+ +S+A+ ++G   T    
Sbjct: 68  TVWAWGANAQGQLGEGSTLQHSTPTQVVGLT--GVTAVAAGNTHSMALREEGTVWTWGTN 125

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                       ++P+QV  L  T +   A G  H LA+ + G  +AWG N  GQ G+  
Sbjct: 126 TDGQLGDGVSQRSVPAQVAGL--TGVTAIAAGNLHSLALIN-GAVWAWGNNTTGQLGDGS 182

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGD 166
                T          P + A    V  +AAG  HS+ L R+G VW WG  +      G 
Sbjct: 183 STSRST----------PAKVAGLTEVVAIAAGDFHSLALKRDGTVWAWGGNYSGQLGDGT 232

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQED---GALWAWGNNEYGQLGTGDTQPRSQP 223
           +   S PVRV GL  +  +A G  H++A       G +WAWG+N YGQLG G       P
Sbjct: 233 LDSRSTPVRVSGLTGIVALAGGGSHSVAASSTTLGGKVWAWGDNTYGQLGNGGDVSSLLP 292

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V GL+   +V +A+G  HS AL  D  V+ W  G++ +        S + VP +V+ +
Sbjct: 293 LEVPGLT--QVVALASGTSHSLALRGDDSVWAW--GDNAQAQTAQTGTSVQRVPVRVSGV 348

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNA 342
              D   ++CG   S+    D     +G    G+LG G       P  VP +   A   A
Sbjct: 349 --SDAQALACGNAFSLVGRGDNVTLGWGANGSGQLGNGSSSVRALPGRVPSLTAGASLAA 406

Query: 343 GD 344
           GD
Sbjct: 407 GD 408



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 168/346 (48%), Gaps = 37/346 (10%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
            ++ AWG    GQLG G          V+A+   +   + +G+++ LA+  DG   +    
Sbjct: 722  TVWAWGDNSLGQLGNGATSASP--VPVQAVGYPRTVPLASGAQHVLAVSSDGSVFSFGSN 779

Query: 62   -------ENIPSQVNA--LSNTKIVQA-AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   E   +Q +   L+  + ++A A G    LA+   G  +AWG N  GQ G+   
Sbjct: 780  SRGQLGYEGSATQTSPRWLTGPECIEAVAAGALFSLALSCDGGVWAWGDNGSGQLGD--- 836

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                 G +  R    P R      V  +AAG  H++ +  +G VW WG         G  
Sbjct: 837  -----GAVTAR--TAPARVPGLAHVVAIAAGSDHALAVRADGTVWAWGANGSGQLGDGTT 889

Query: 168  KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
               +VP++V+ L  V  +A G+ H+LA++ DG +WAWG N  GQLG G T  R+ P+ V 
Sbjct: 890  TSRAVPMQVKELVDVVAVAGGSGHSLAVRADGTVWAWGANGSGQLGDGTTTSRTLPVFVS 949

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
             LSG+    IA+G  HS AL + G V+ WG    G+LG  D   +S+  P +V+ L+G  
Sbjct: 950  TLSGVQA--IASGAQHSLALAEGGVVWAWGANGSGQLG--DGTTTSRTRPVQVSGLSG-- 1003

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            +  +  G + S+ALT  G ++S+G    G+LG G   +  QP   P
Sbjct: 1004 VQGLVAGASFSLALT-PGKVWSWGNNSAGQLGDGTLNSRSQPGAGP 1048



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 152/345 (44%), Gaps = 40/345 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
           ++ AWG    GQLG  +   R     V  +       + AG+ +SLA+  DG   T  +N
Sbjct: 470 TVWAWGDNAYGQLGDTSGGRRPSPAQVPGVA--GATEIAAGTYHSLALRSDGTVWTWGDN 527

Query: 64  IPSQVNALSNTK-------------IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
              Q+ A +  +             I   A G +H LA+D  G+ +AWG N YGQ G+  
Sbjct: 528 SYGQLGAGATPRGPRAPAVVPGLAVITHVAAGLFHSLALDSSGQVWAWGDNVYGQLGD-- 585

Query: 111 ERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                 G    R+  +P R +  P  I + + AG ++SV L  +G VWTWG+        
Sbjct: 586 ------GSTTSRN--VPGRVSGLPAGI-QAIVAGPSYSVALGADGSVWTWGENSNGQLGD 636

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G      VP RV     +  ++    H +AL   G LWAWG N  GQLG G     S P 
Sbjct: 637 GTTTARPVPARVSLPATLVALSTRGSHTVALDTTGMLWAWGRNVSGQLGNGTLVSESTPR 696

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V   +   +   A+G   + AL  DG V+ WG    G+LG G    S    P  V  + 
Sbjct: 697 RVPSFA--RVQGFASGLRTTFALRADGTVWAWGDNSLGQLGNGATSAS----PVPVQAVG 750

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
               V ++ G  H +A++ DG +FSFG    G+LGY    T   P
Sbjct: 751 YPRTVPLASGAQHVLAVSSDGSVFSFGSNSRGQLGYEGSATQTSP 795



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 121/219 (55%), Gaps = 16/219 (7%)

Query: 122 RDIVIPQRCAPKLIVR----QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
           R  V  QR AP + V+    ++AAG  HS+ +T  G VW WG         G   Q S P
Sbjct: 32  RAWVPGQRRAPAISVQGRPYRLAAGLNHSLYVTPAGTVWAWGANAQGQLGEGSTLQHSTP 91

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
            +V GL  V  +A G  H++AL+E+G +W WG N  GQLG G +Q RS P  V GL+G+T
Sbjct: 92  TQVVGLTGVTAVAAGNTHSMALREEGTVWTWGTNTDGQLGDGVSQ-RSVPAQVAGLTGVT 150

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              IAAG  HS AL  +G V+ WG    G+L  GD   +S+  P KV  L   ++V ++ 
Sbjct: 151 A--IAAGNLHSLALI-NGAVWAWGNNTTGQL--GDGSSTSRSTPAKVAGL--TEVVAIAA 203

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G  HS+AL RDG ++++G    G+LG G   +   P+ V
Sbjct: 204 GDFHSLALKRDGTVWAWGGNYSGQLGDGTLDSRSTPVRV 242



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 158/350 (45%), Gaps = 42/350 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAI----------- 53
           ++  WG    GQLG G          VV  L    +  V AG  +SLA+           
Sbjct: 520 TVWTWGDNSYGQLGAGATPRGPRAPAVVPGLA--VITHVAAGLFHSLALDSSGQVWAWGD 577

Query: 54  -----CDDGKTKTENIPSQVNALSNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQCG 107
                  DG T + N+P +V+ L     +QA + G  + +A+   G  + WG N  GQ G
Sbjct: 578 NVYGQLGDGSTTSRNVPGRVSGLP--AGIQAIVAGPSYSVALGADGSVWTWGENSNGQLG 635

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
           +        G    R +  P R +    +  ++  G+H+V L   G +W WG+       
Sbjct: 636 D--------GTTTARPV--PARVSLPATLVALSTRGSHTVALDTTGMLWAWGRNVSGQLG 685

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G +   S P RV    +V+  A G     AL+ DG +WAWG+N  GQLG G T   + P
Sbjct: 686 NGTLVSESTPRRVPSFARVQGFASGLRTTFALRADGTVWAWGDNSLGQLGNGATS--ASP 743

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           +PVQ +     V +A+G  H  A++ DG V+ +G    G+LG+     +++  P+   L 
Sbjct: 744 VPVQAVGYPRTVPLASGAQHVLAVSSDGSVFSFGSNSRGQLGY--EGSATQTSPRW--LT 799

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             E I  V+ G   S+AL+ DG ++++G    G+LG G       P  VP
Sbjct: 800 GPECIEAVAAGALFSLALSCDGGVWAWGDNGSGQLGDGAVTARTAPARVP 849



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 170/360 (47%), Gaps = 49/360 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           ++  WG+  DGQLG G + +R     V  L    V ++ AG+ +SLA+ +          
Sbjct: 118 TVWTWGTNTDGQLGDGVS-QRSVPAQVAGLT--GVTAIAAGNLHSLALINGAVWAWGNNT 174

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG + + + P++V  L  T++V  A G +H LA+   G  +AWGGN  GQ G+  
Sbjct: 175 TGQLGDGSSTSRSTPAKVAGL--TEVVAIAAGDFHSLALKRDGTVWAWGGNYSGQLGDGT 232

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV---LTREGHVWTW-----GQPW 162
                T          P R +    +  +A GG+HSV     T  G VW W     GQ  
Sbjct: 233 LDSRST----------PVRVSGLTGIVALAGGGSHSVAASSTTLGGKVWAWGDNTYGQLG 282

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             GD+  + +P+ V GL QV  +A G  H+LAL+ D ++WAWG+N   Q     T  +  
Sbjct: 283 NGGDVSSL-LPLEVPGLTQVVALASGTSHSLALRGDDSVWAWGDNAQAQTAQTGTSVQRV 341

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-N 281
           P+ V G+S      +A G   S     D    GWG    G+LG G +  S + +P +V +
Sbjct: 342 PVRVSGVSDAQA--LACGNAFSLVGRGDNVTLGWGANGSGQLGNGSS--SVRALPGRVPS 397

Query: 282 LLAGEDIVQVSCGGTHSVALTR-DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           L AG  +      G H V L + DG ++++G   +G+LG G  V+   P+ +   + + R
Sbjct: 398 LTAGASL----AAGDHHVFLRQADGSVWAWGDNTYGQLGDGTLVSRPAPVRLSSTLTSVR 453


>gi|410918052|ref|XP_003972500.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC3-like [Takifugu rubripes]
          Length = 1031

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/385 (29%), Positives = 187/385 (48%), Gaps = 45/385 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAICDDGKTKT-- 61
           ++ WG  +DGQLGIG   ER  +   +    +    ++ +V G ++S+ +  DG   T  
Sbjct: 1   MLCWGKAKDGQLGIG--VERNPMFEPRNCNVFTGRGLKEIVCGGQHSVFLLHDGSVYTCG 58

Query: 62  --------EN----IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    N     P  V AL   KI   + G  H LAV++QG+ +AWG  E GQ G  
Sbjct: 59  SNSCGQLGHNKPGITPEFVGALDTQKITLVSCGQAHSLAVNEQGQVFAWGAGEEGQLG-- 116

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------ 163
                 T   +R   +I + C  +  + QV  G  H + L+++G ++TWGQ         
Sbjct: 117 ---LGTTETAVRIPRLIKRLCDHR--IAQVMCGNQHCIALSKDGQLFTWGQNTSGQLGLG 171

Query: 164 PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G+  ++  P  ++ L  + L  I  G  H+ AL   GA++ WG N+ GQLG  D Q R+
Sbjct: 172 KGEPSKL-FPQPLKSLAGIPLAKITAGGDHSFALSLSGAVFGWGKNKAGQLGLNDIQDRA 230

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ L    +V I+ G  H+ ALT DG ++ +G G  G+LG G    +++++P++V 
Sbjct: 231 VPCHIKFLRSQKVVHISCGEEHTAALTKDGGLFTFGDGSWGQLGHGST--ANELLPRRVL 288

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            L G ++ Q++CG  H++A     G +++FG   HG+LG G  V +      P+      
Sbjct: 289 ELMGTEVSQITCGRHHTLAFAPSSGGVYAFGCNSHGQLGTG--VLSADKSPYPLKTSFLS 346

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
            +  G   +     + CGG H+  +
Sbjct: 347 GSIHGTVTK-----ITCGGDHSFLL 366



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 20/196 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           ++  WG  + GQLG+ + ++R   C +K L   KV  +  G  ++ A+  D         
Sbjct: 209 AVFGWGKNKAGQLGLNDIQDRAVPCHIKFLRSQKVVHISCGEEHTAALTKDGGLFTFGDG 268

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAV-DDQGRAYAWGGNEYGQCGE 108
                  G T  E +P +V  L  T++ Q   G  H LA     G  YA+G N +GQ G 
Sbjct: 269 SWGQLGHGSTANELLPRRVLELMGTEVSQITCGRHHTLAFAPSSGGVYAFGCNSHGQLGT 328

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
                D +   L+   +     +    V ++  GG HS +L        + + +   +I 
Sbjct: 329 GVLSADKSPYPLKTSFL---SGSIHGTVTKITCGGDHSFLLYSNDQNSEYPEDFRVINIS 385

Query: 169 QISVPVRVQGLEQVKL 184
               P+  + L   +L
Sbjct: 386 NAISPINYERLNSWRL 401



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 15/112 (13%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG+ + G+LG G  +++    P+  N+  G  + ++ CGG HSV L  DG +++ G    
Sbjct: 4   WGKAKDGQLGIG-VERNPMFEPRNCNVFTGRGLKEIVCGGQHSVFLLHDGSVYTCGSNSC 62

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+LG+ +   T            P   G  +D + I  LV+CG  H+LA+ E
Sbjct: 63  GQLGHNKPGIT------------PEFVG-ALDTQKIT-LVSCGQAHSLAVNE 100


>gi|345324538|ref|XP_003430830.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Ornithorhynchus
            anatinus]
          Length = 3053

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 2172 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 2231

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  + + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 2232 AGGRLGIGGTESVSTPTLLESIQHVFVKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 2291

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  +AAGG HS  +T  G +++WG+       
Sbjct: 2292 HGNRSPCDRPRVVESLRGIE--------VVDIAAGGAHSACITVAGDLYSWGKGRYGRLG 2343

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 2344 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 2403

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 2404 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 2461

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 2462 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 2517

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 2518 Q--GKKINR------VACGSAHTLA---WSTSK 2539



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 156/321 (48%), Gaps = 50/321 (15%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           P  V  L++  IV+ A    G H LA+   G  ++WG      CG       D GR+   
Sbjct: 189 PQLVQGLASRNIVKVAAHSDGHHYLALAATGEVFSWG------CG-------DGGRLGHG 235

Query: 123 DIVIPQRCAPKLI-----------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
           D V  +   PK+I           V  +A G T+S  +T EG ++TWG+        G  
Sbjct: 236 DTVPLEE--PKMISALSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSS 293

Query: 168 KQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           +  ++P+ V GL+ +K+I V    G    LA+ E+G +W+WG+ +YG+LG G +     P
Sbjct: 294 EDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTP 353

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             ++ L  L +V +  G   S ALT DG+VY WG+G++ RLG G  +      P+ +  L
Sbjct: 354 KLIEKLQDLDIVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVR--YPKLLEGL 411

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            G+ +V V+ G TH +ALT D  + S+G  D  +     ++T  QP  +P          
Sbjct: 412 QGKKVVDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRITKPQPSALP---------- 461

Query: 344 DGVDRRWIAKLVACGGRHTLA 364
            G+D + I   +ACG   + A
Sbjct: 462 -GLDTKHIVG-IACGPAQSFA 480



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 151/316 (47%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N            D  G  L    
Sbjct: 147 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYVQAYN-----------SDTLGPQLV--- 192

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
              Q  A + IV+  A + G H + L   G V++WG             P  + K IS  
Sbjct: 193 ---QGLASRNIVKVAAHSDGHHYLALAATGEVFSWGCGDGGRLGHGDTVPLEEPKMISAL 249

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL GL 
Sbjct: 250 SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLK 309

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   DIV+V
Sbjct: 310 VIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDIVKV 367

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 368 RCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQGKKV 416

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 417 VD-VAAGSTHCLALTE 431



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 1150 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 1199

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 1200 EGKVYACGEA-TNGRLGLGISSGTVPLPRQITALSNYVVKKVAVHSGGRHAMALTVDGKV 1258

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 1259 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 1318

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 1319 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 1376

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   VP NI   R  G GV +      + CG + +LA+ +
Sbjct: 1377 RG----GSEGCNVPQNI--ERLNGQGVCQ------IECGAQFSLALTK 1412



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 176/413 (42%), Gaps = 73/413 (17%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 1149 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGE 1208

Query: 59   -----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                       + T  +P Q+ ALSN  + + A+  GG H +A+   G+ ++WG  + G+
Sbjct: 1209 ATNGRLGLGISSGTVPLPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGK 1268

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  +T  G ++TWG      
Sbjct: 1269 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAAITSSGELYTWGLGEYGR 1320

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 1321 LGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 1380

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL----------GFG 267
            +  + P  ++ L+G  +  I  G   S ALT  G V+ WGRG+ G L             
Sbjct: 1381 EGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGRGDFGELRPDSHIVQSGNVS 1440

Query: 268  D----NDKSSKMVPQKVNLLA-----GEDIVQV-------SCGGTHSVALTRDGHIFSFG 311
            D     +K + ++P     L      G +IV +       S  G       R   ++++G
Sbjct: 1441 DRMRVRNKGACLIPLPFFGLVSPREMGWEIVGIERNSGISSFCGQQGERRERQLEVYAWG 1500

Query: 312  RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              DHG+ G G      +P  V            G++ + I + VACG  H++A
Sbjct: 1501 DNDHGQQGNGTTTVNRKPTLV-----------QGLEGQKITR-VACGSSHSVA 1541



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 54/310 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A+T  + +WG G+ G+LG G+            LE  K+ S ++G +            
Sbjct: 215 LAATGEVFSWGCGDGGRLGHGDT---------VPLEEPKMISALSGKQ------------ 253

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                      +   +V  A G  +  A+  +G  Y WG   YG+ G     +D T  +L
Sbjct: 254 -----------AGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHG-SSEDQTIPML 301

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
              +        K+I     +G   ++ +T  G VW+WG     GD  ++          
Sbjct: 302 VTGLK-----GLKVIDVSCGSGDAQTLAVTENGQVWSWGD----GDYGKLGRGGSDGCKT 352

Query: 173 PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P  ++ L+ + ++ V  G+  ++AL +DG +++WG  +  +LG G  +    P  ++GL 
Sbjct: 353 PKLIEKLQDLDIVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQ 412

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  +VD+AAG  H  ALT+D EV+ WG  +  +    D  + +K  P  +  L  + IV 
Sbjct: 413 GKKVVDVAAGSTHCLALTEDSEVHSWGSNDQCQ--HFDTLRITKPQPSALPGLDTKHIVG 470

Query: 291 VSCGGTHSVA 300
           ++CG   S A
Sbjct: 471 IACGPAQSFA 480



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 122/270 (45%), Gaps = 32/270 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
            ++S   + +WG  EDG+LG GN    +   VV++L   +V  + AG  +S  I       
Sbjct: 2273 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVVESLRGIEVVDIAAGGAHSACITVAGDLY 2332

Query: 54   ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
                        G ++ +  P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 2333 SWGKGRYGRLGHGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGD 2392

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 2393 YGKLGR--GGSDGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 2444

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 2445 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 2504

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            T    +P  V  L G  +  +A G  H+ A
Sbjct: 2505 TNAIQRPRLVAALQGKKINRVACGSAHTLA 2534



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 2171 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 2230

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 2231 GAGGRLGIGGTESVSTPTLLESIQHVFVKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 2290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ V  L G ++V ++ GG HS  +T  G ++S+G+G +GRLG+G
Sbjct: 2291 GHGNRSPCDR--PRVVESLRGIEVVDIAAGGAHSACITVAGDLYSWGKGRYGRLGHG 2345



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 117/283 (41%), Gaps = 78/283 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR++          
Sbjct: 1304 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDA---------- 1353

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      LA+ D+G  ++WG  ++G+ G    R    G  +
Sbjct: 1354 ------------------------QTLALTDEGLVFSWGDGDFGKLG----RGGSEGCNV 1385

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQ---ISV 172
             ++I   +R   + + + +  G   S+ LT+ G VWTW     G+  P   I Q   +S 
Sbjct: 1386 PQNI---ERLNGQGVCQ-IECGAQFSLALTKSGVVWTWGRGDFGELRPDSHIVQSGNVSD 1441

Query: 173  PVRVQGLEQVKLIAVGAFHNLALQEDG---------------------------ALWAWG 205
             +RV+  +   LI +  F  ++ +E G                            ++AWG
Sbjct: 1442 RMRVRN-KGACLIPLPFFGLVSPREMGWEIVGIERNSGISSFCGQQGERRERQLEVYAWG 1500

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            +N++GQ G G T    +P  VQGL G  +  +A G  HS A T
Sbjct: 1501 DNDHGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVAWT 1543


>gi|27882442|gb|AAH44667.1| Herc2 protein, partial [Mus musculus]
          Length = 1183

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 302 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 361

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 362 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 421

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                  D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 422 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 473

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 474 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 533

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 534 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 591

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 592 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 647

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
           +  G  V+R      VACG  HTLA   W T +
Sbjct: 648 Q--GKKVNR------VACGSAHTLA---WSTSK 669



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 403 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 430

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
               P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 431 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 486

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
             L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 487 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 533

Query: 171 -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
             VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 534 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 593

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 594 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 651

Query: 288 IVQVSCGGTHSVA 300
           + +V+CG  H++A
Sbjct: 652 VNRVACGSAHTLA 664



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 56/176 (31%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
           G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 301 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 360

Query: 233 -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                            TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 361 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 420

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+
Sbjct: 421 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 474


>gi|444915471|ref|ZP_21235603.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713402|gb|ELW54302.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 752

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 161/314 (51%), Gaps = 34/314 (10%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T +   P QV  LS    V A  G  H LA+   G  +AWG N YGQ G      DD
Sbjct: 82  DGTTLSRRTPVQVQGLSGVAAVAAGHG--HSLALRYDGTVWAWGNNAYGQLG------DD 133

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
           T    R +  +P +      V  V AG THS+ +  +G VW WG+        G     +
Sbjct: 134 T----RDNRTVPVQVTGLSGVVSVVAGDTHSLAVRSDGSVWAWGRNTSGQLGDGTRDDRA 189

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           VPV+V GL  V  +A G  H+LA++ DG++WAWGNN  GQLG         P  V+ +SG
Sbjct: 190 VPVQVTGLSGVVSVAAGGNHSLAVRSDGSVWAWGNNASGQLGGAPEAAYPVPWRVEDVSG 249

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             +V +AAG +HS A+  DG V+ WG   +G+LG G  + +S+ +P++V  L G  +V V
Sbjct: 250 --VVAVAAGQYHSLAVRYDGTVWAWGDNLYGQLGDGKLEGNSRWLPKQVPGLGG--VVAV 305

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           S G  HS+ +  DG ++++G   +G+LG G +     P++V + +               
Sbjct: 306 SAGFYHSLVVRSDGTVWAWGNNAYGQLGGGSRAHAASPVQV-LGVSG------------- 351

Query: 352 AKLVACGGRHTLAI 365
           A  VA G RH+L +
Sbjct: 352 AVAVAAGYRHSLVV 365



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 171/350 (48%), Gaps = 38/350 (10%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  S+ AWG    GQLG G  ++R     V  L    V SV AG  +SLA+  DG     
Sbjct: 165 SDGSVWAWGRNTSGQLGDGTRDDRAVPVQVTGLS--GVVSVAAGGNHSLAVRSDGSVWAW 222

Query: 60  -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                            +P +V  +S   +V  A G +H LAV   G  +AWG N YGQ 
Sbjct: 223 GNNASGQLGGAPEAAYPVPWRVEDVSG--VVAVAAGQYHSLAVRYDGTVWAWGDNLYGQL 280

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G+        G++      +P++      V  V+AG  HS+V+  +G VW WG       
Sbjct: 281 GD--------GKLEGNSRWLPKQVPGLGGVVAVSAGFYHSLVVRSDGTVWAWGNNAYGQL 332

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G     + PV+V G+     +A G  H+L +  DG LWAWG+N  GQ G G       
Sbjct: 333 GGGSRAHAASPVQVLGVSGAVAVAAGYRHSLVVNSDGTLWAWGSNLDGQRGDGTLTRYPT 392

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V GLSG  +V +AAGG H  AL  DG V+ WG    G+L  GD  + S+ VP++V  
Sbjct: 393 PGRVPGLSG--VVSVAAGGGHVLALLSDGTVWAWGDNASGQL--GDGTRHSRWVPRQVPE 448

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L+G  +V V+ G + S+A+  DG ++S+G   +G+LG+G    +  P+ V
Sbjct: 449 LSG--VVAVAAGSSFSLAVRYDGSVWSWGDNAYGQLGHGSTDASSVPLHV 496



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 167/350 (47%), Gaps = 42/350 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG+   GQLG    + R     V  L    V SVVAG  +SLA+  DG        
Sbjct: 118 TVWAWGNNAYGQLGDDTRDNRTVPVQVTGLS--GVVSVVAGDTHSLAVRSDGSVWAWGRN 175

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         +P QV  LS   +V  A GG H LAV   G  +AWG N  GQ G  
Sbjct: 176 TSGQLGDGTRDDRAVPVQVTGLSG--VVSVAAGGNHSLAVRSDGSVWAWGNNASGQLGGA 233

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
           PE              +P R      V  VAAG  HS+ +  +G VW WG         G
Sbjct: 234 PEAA----------YPVPWRVEDVSGVVAVAAGQYHSLAVRYDGTVWAWGDNLYGQLGDG 283

Query: 166 DIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            ++  S  +P +V GL  V  ++ G +H+L ++ DG +WAWGNN YGQLG G     + P
Sbjct: 284 KLEGNSRWLPKQVPGLGGVVAVSAGFYHSLVVRSDGTVWAWGNNAYGQLGGGSRAHAASP 343

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V G+SG   V +AAG  HS  +  DG ++ WG    G+   GD   +    P +V  L
Sbjct: 344 VQVLGVSG--AVAVAAGYRHSLVVNSDGTLWAWGSNLDGQR--GDGTLTRYPTPGRVPGL 399

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +G  +V V+ GG H +AL  DG ++++G    G+LG G + +   P +VP
Sbjct: 400 SG--VVSVAAGGGHVLALLSDGTVWAWGDNASGQLGDGTRHSRWVPRQVP 447



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 166/356 (46%), Gaps = 45/356 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  S+ AWG+   GQLG     E  +    +  +   V +V AG  +SLA+  DG     
Sbjct: 215 SDGSVWAWGNNASGQLG--GAPEAAYPVPWRVEDVSGVVAVAAGQYHSLAVRYDGTVWAW 272

Query: 60  ---------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                           +  +P QV  L    +V  + G +H L V   G  +AWG N YG
Sbjct: 273 GDNLYGQLGDGKLEGNSRWLPKQVPGLGG--VVAVSAGFYHSLVVRSDGTVWAWGNNAYG 330

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G             R     P +         VAAG  HS+V+  +G +W WG     
Sbjct: 331 QLGGGS----------RAHAASPVQVLGVSGAVAVAAGYRHSLVVNSDGTLWAWGSNLDG 380

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G + +   P RV GL  V  +A G  H LAL  DG +WAWG+N  GQLG G    R
Sbjct: 381 QRGDGTLTRYPTPGRVPGLSGVVSVAAGGGHVLALLSDGTVWAWGDNASGQLGDGTRHSR 440

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  V  LSG  +V +AAG   S A+  DG V+ WG   +G+LG G  D SS  VP  V
Sbjct: 441 WVPRQVPELSG--VVAVAAGSSFSLAVRYDGSVWSWGDNAYGQLGHGSTDASS--VPLHV 496

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ---PMEVP 333
             L+  ++V V+ G  H++A+  DG ++ +G  D+G+LG G +  + +   P++VP
Sbjct: 497 RELS--EVVAVAAGSMHALAVRADGTVWGWGFNDYGQLGDGFEGISARRYSPVQVP 550



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 163/339 (48%), Gaps = 37/339 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG    GQLG G    R WV   +  E   V +V AGS  SLA+  DG   
Sbjct: 415 LLSDGTVWAWGDNASGQLGDGTRHSR-WVPR-QVPELSGVVAVAAGSSFSLAVRYDGSVW 472

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T   ++P  V  LS  ++V  A G  H LAV   G  + WG N+YG
Sbjct: 473 SWGDNAYGQLGHGSTDASSVPLHVRELS--EVVAVAAGSMHALAVRADGTVWGWGFNDYG 530

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+  E     G   RR    P +      +  VAA   HS+ +  +G VW WG     
Sbjct: 531 QLGDGFE-----GISARR--YSPVQVPGLSGMVSVAADFGHSLAVRADGTVWAWGNNTDS 583

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   +  VP+RV     V L++ G  +++A++ DG+LWAWG N  GQLG G T  R
Sbjct: 584 ELGDGTTTRRLVPLRVNAPGTVALLSAGYNYSMAMRADGSLWAWGTNFAGQLGDGSTTSR 643

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ VQG   +    +AAG  HS A+  DG ++ WG    G+L  GD   +   +P +V
Sbjct: 644 AVPVRVQGP--VRASTLAAGQSHSMAVGSDGFLWAWGFNFEGQL--GDGTLTHHALPVRV 699

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             ++G   V V+     S+A+  DG ++++G  D G+LG
Sbjct: 700 PGMSGVVAVDVTL--NLSLAVRSDGSLWAWGNNDVGQLG 736



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/402 (29%), Positives = 171/402 (42%), Gaps = 89/402 (22%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S  ++ AWG+   GQLG G+         V+ L      +V AG R+SL +  DG     
Sbjct: 317 SDGTVWAWGNNAYGQLGGGSRAHAA--SPVQVLGVSGAVAVAAGYRHSLVVNSDGTLWAW 374

Query: 59  -----------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                      T T    P +V  LS   +V  A GG H LA+   G  +AWG N  GQ 
Sbjct: 375 GSNLDGQRGDGTLTRYPTPGRVPGLSG--VVSVAAGGGHVLALLSDGTVWAWGDNASGQL 432

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G+            R    +P++      V  VAAG + S+ +  +G VW+WG       
Sbjct: 433 GDGT----------RHSRWVPRQVPELSGVVAVAAGSSFSLAVRYDGSVWSWGDNAYGQL 482

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD---TQP 219
             G     SVP+ V+ L +V  +A G+ H LA++ DG +W WG N+YGQLG G    +  
Sbjct: 483 GHGSTDASSVPLHVRELSEVVAVAAGSMHALAVRADGTVWGWGFNDYGQLGDGFEGISAR 542

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R  P+ V GLSG+  V +AA   HS A+  DG V+ WG      LG  D   + ++VP +
Sbjct: 543 RYSPVQVPGLSGM--VSVAADFGHSLAVRADGTVWAWGNNTDSELG--DGTTTRRLVPLR 598

Query: 280 VN-------LLAGEDIVQ-----------------------------------------V 291
           VN       L AG +                                            +
Sbjct: 599 VNAPGTVALLSAGYNYSMAMRADGSLWAWGTNFAGQLGDGSTTSRAVPVRVQGPVRASTL 658

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + G +HS+A+  DG ++++G    G+LG G       P+ VP
Sbjct: 659 AAGQSHSMAVGSDGFLWAWGFNFEGQLGDGTLTHHALPVRVP 700



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 106/179 (59%), Gaps = 10/179 (5%)

Query: 145 HSVVLTREGHVWTWGQPW--PPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
           HS+ +  +G VWT G       GD   +S   PV+VQGL  V  +A G  H+LAL+ DG 
Sbjct: 59  HSLAVRPDGTVWTTGGNGHGQLGDGTTLSRRTPVQVQGLSGVAAVAAGHGHSLALRYDGT 118

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +WAWGNN YGQLG      R+ P+ V GLSG  +V + AG  HS A+  DG V+ WGR  
Sbjct: 119 VWAWGNNAYGQLGDDTRDNRTVPVQVTGLSG--VVSVVAGDTHSLAVRSDGSVWAWGRNT 176

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            G+LG G  D   + VP +V  L+G  +V V+ GG HS+A+  DG ++++G    G+LG
Sbjct: 177 SGQLGDGTRDD--RAVPVQVTGLSG--VVSVAAGGNHSLAVRSDGSVWAWGNNASGQLG 231



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 16/177 (9%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           +V A   N+ +   DG T    +P +VNA     ++ A     + +A+   G  +AWG N
Sbjct: 573 TVWAWGNNTDSELGDGTTTRRLVPLRVNAPGTVALLSAGYN--YSMAMRADGSLWAWGTN 630

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
             GQ G+        G    R   +P R    +    +AAG +HS+ +  +G +W WG  
Sbjct: 631 FAGQLGD--------GSTTSR--AVPVRVQGPVRASTLAAGQSHSMAVGSDGFLWAWGFN 680

Query: 162 WP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           +      G +   ++PVRV G+  V  + V    +LA++ DG+LWAWGNN+ GQLGT
Sbjct: 681 FEGQLGDGTLTHHALPVRVPGMSGVVAVDVTLNLSLAVRSDGSLWAWGNNDVGQLGT 737



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           M +  S+ AWG+   GQLG G+   R     V+   P +  ++ AG  +S+A+       
Sbjct: 618 MRADGSLWAWGTNFAGQLGDGSTTSRA--VPVRVQGPVRASTLAAGQSHSMAVGSDGFLW 675

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG      +P +V  +S    V   +     LAV   G  +AWG N+ G
Sbjct: 676 AWGFNFEGQLGDGTLTHHALPVRVPGMSGVVAVDVTLN--LSLAVRSDGSLWAWGNNDVG 733

Query: 105 QCGEEPE 111
           Q G +P 
Sbjct: 734 QLGTQPS 740


>gi|344275071|ref|XP_003409337.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Loxodonta africana]
          Length = 1057

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLAD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQASPKLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGLD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPKLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|195336543|ref|XP_002034895.1| GM14399 [Drosophila sechellia]
 gi|194127988|gb|EDW50031.1| GM14399 [Drosophila sechellia]
          Length = 1058

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 175/351 (49%), Gaps = 47/351 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLA 52
           MAS   +  WGS   GQLG+G  E+ +       L P +        V+ V  G R++L 
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQ------ILTPRQIPWTPDTAVQQVACGHRHTLF 54

Query: 53  ICDDGKTKT----------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           +   GK              ++P++    +  L +  I+Q + G  H LA+ D G+  +W
Sbjct: 55  LTATGKVYACGSNDYSQLGHDLPTKRPQLIPELQDYVIIQISCGSRHSLALSDWGQVLSW 114

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N+ GQ G   E++     I++   V+ Q  +  ++  Q+A G  HS+ LT  G +++W
Sbjct: 115 GDNDCGQLGHATEKE-----IVQLPKVVRQLVSKTVV--QIACGNNHSLALTSCGELYSW 167

Query: 159 GQPW-------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEY 209
           G           P D+   + P+R+  L  + L  IA G  H+  + + GA++ WG N  
Sbjct: 168 GSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNC 227

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG  D   R+ P  ++ L  L +  +A G   S  LT++G V+  G G +G+LG G +
Sbjct: 228 GQLGLNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFS 287

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
             S++M+P+ V  L G  I QV+CG  H++AL    G +++FG G  G+LG
Sbjct: 288 --SNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGKVYAFGLGSSGQLG 336



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 132/282 (46%), Gaps = 36/282 (12%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREG 153
           Y WG   +GQ G         G I    I+ P++    P   V+QVA G  H++ LT  G
Sbjct: 8   YCWGSTSHGQLG--------LGGIEDEQILTPRQIPWTPDTAVQQVACGHRHTLFLTATG 59

Query: 154 HVWTWGQPWPPGDIKQI------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWG 205
            V+  G      D  Q+        P  +  L+   +I +  G+ H+LAL + G + +WG
Sbjct: 60  KVYACGS----NDYSQLGHDLPTKRPQLIPELQDYVIIQISCGSRHSLALSDWGQVLSWG 115

Query: 206 NNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           +N+ GQLG    +   Q P  V+ L   T+V IA G  HS ALT  GE+Y WG   +G+L
Sbjct: 116 DNDCGQLGHATEKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSNIYGQL 175

Query: 265 GFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           G    ND +    P ++  L G  +  ++CGG HS  +++ G +F +GR + G+LG   +
Sbjct: 176 GVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDE 235

Query: 324 VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                P +    +   R  G         + VACG   ++ +
Sbjct: 236 TNRAYPTQ----LKTLRTLG--------VRFVACGDEFSVFL 265



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P+++       + QV+CG  H++ LT  G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPRQIPWTPDTAVQQVACGHRHTLFLTATGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+        P + P  IP  ++        ++   ++CG RH+LA+ +W
Sbjct: 66  SNDYSQLGHDL------PTKRPQLIPELQD--------YVIIQISCGSRHSLALSDW 108



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 101/250 (40%), Gaps = 37/250 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG    +E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 111 VLSWGDNDCGQLGHATEKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSN 170

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 171 IYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 230

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQP 161
           G      D+T R     +    +    L VR VA G   SV LT EG V+T     +GQ 
Sbjct: 231 G----LNDETNRAYPTQL----KTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQ- 281

Query: 162 WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQ 218
              G      +P  V  L    +  +A G  H LAL    G ++A+G    GQLGT  T+
Sbjct: 282 LGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGKVYAFGLGSSGQLGTRSTK 341

Query: 219 PRSQPIPVQG 228
               P  V G
Sbjct: 342 SLMLPQVVIG 351



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 213 ISKSGAVFGWGRNNCGQLGLNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 272

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +G+ YA+G    
Sbjct: 273 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGKVYAFGLGSS 332

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              L++RQ+ +GG  S+V T
Sbjct: 333 GQLGTR-----STKSLMLPQVVIGPWVSPSGSAQLQSNDSQVSLVIRQIFSGGDQSIVTT 387

Query: 151 REGHVWTWGQPWPPGDIK 168
                  +    PP D +
Sbjct: 388 T-----LFIDKVPPEDFR 400


>gi|158300884|ref|XP_552411.3| AGAP011823-PA [Anopheles gambiae str. PEST]
 gi|157013375|gb|EAL38855.3| AGAP011823-PA [Anopheles gambiae str. PEST]
          Length = 4947

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 182/402 (45%), Gaps = 62/402 (15%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG  +    +     +AL   +   +  G +   A+  DGK      
Sbjct: 4089 STIFGWGHNHRGQLGGLDGSRIKNPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGY 4148

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      T +   P+ V +L +  I + A+  GG HCLA+   G  ++WG  E G+ 
Sbjct: 4149 GAGGRLGVGGTDSVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKL 4208

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG 159
            G     +D   R             PKLI       V  +A G  HS  +T +GHV TWG
Sbjct: 4209 GHG--NRDSYDR-------------PKLIESLSGIGVVDIACGSAHSACITIQGHVLTWG 4253

Query: 160  Q----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQ 211
            +        GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+
Sbjct: 4254 KGRYGRLGHGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGK 4313

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            LG G +     P+ ++ L+GL +  +  G   S ALT  G VY WG+G++ RLG G+ D 
Sbjct: 4314 LGRGGSDGCKVPMKIESLAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDH 4373

Query: 272  SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
              +  P+KV  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G      +P  
Sbjct: 4374 VRR--PKKVAALQGKKIISIATGSLHCVACSDAGEVFTWGDNDEGQLGDGTVSAIQRPRL 4431

Query: 332  VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            V             +  + I K++ CG  HTLA+  +Q  E+
Sbjct: 4432 V-----------QSLQGKHIVKVI-CGSAHTLALSTYQLSEA 4461



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 155/331 (46%), Gaps = 58/331 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT----- 59
            + A G G +G+LG+G+N        V  L  Y V+ V   +G ++++A+  DGK      
Sbjct: 3082 LYACGEGTNGRLGLGHNNNVPTPKQVPILSQYVVKKVAVHSGGKHAMALTLDGKVFSWGE 3141

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        T   P  +  L   +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3142 GEDGKLGHGNRLTLEKPKLIETLRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGH 3201

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                 D+  ++            PKL+       V QVA G     ++ LT +G V++WG
Sbjct: 3202 ----GDNCTQL-----------KPKLVTALQDHRVVQVACGSRDAQTLCLTEDGLVFSWG 3246

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++        S+P +V  L  V ++ +  GA  +LAL + G +W WG  +Y
Sbjct: 3247 D----GDFGKLGRGGSEGCSIPHQVDRLNGVGVMQIECGAQFSLALTKAGEVWTWGKGDY 3302

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G  Q   +P P+QGL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G+ 
Sbjct: 3303 YRLGHGTDQHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVYAWGDNDHGQQGSGNT 3362

Query: 270  DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              + K  P  V  L G  + +V+CG +HSVA
Sbjct: 3363 IVNKK--PSLVLGLDGIFVNRVACGSSHSVA 3391



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 28/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+  + LS  K +  A G      V   G+ YA G    G+ G        T + +  
Sbjct: 3050 KLPTYSSVLSQLKPIHIAGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVPTPKQVP- 3108

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
              ++ Q    K+ V    +GG H++ LT +G V++WG+        G+   +  P  ++ 
Sbjct: 3109 --ILSQYVVKKVAVH---SGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLTLEKPKLIET 3163

Query: 179  L--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L  ++++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L    +V 
Sbjct: 3164 LRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTALQDHRVVQ 3223

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     +  LT+DG V+ WG G+ G+LG G ++  S  +P +V+ L G  ++Q+ CG
Sbjct: 3224 VACGSRDAQTLCLTEDGLVFSWGDGDFGKLGRGGSEGCS--IPHQVDRLNGVGVMQIECG 3281

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G    T Q +  P  I   R  G  V        
Sbjct: 3282 AQFSLALTKAGEVWTWGKGDYYRLGHG----TDQHVRKPTPIQGLR--GKKVIH------ 3329

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3330 VAVGALHCLAVTD 3342



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 143/301 (47%), Gaps = 34/301 (11%)

Query: 39  KVRSVVAGSRNSLAICDDG---------KTKTENIPSQVNALSNTKIVQAA-IGGWHCLA 88
           +VR +V        + D G             +N P+QV  L  T +  AA   G H LA
Sbjct: 564 QVRQIVCAENCVYILTDSGTVLYLSHAISMTEDNYPAQVKGLECTIVQLAAHCEGRHVLA 623

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA---AGGTH 145
           +   G  Y+WG  + G+ G      D + + L      P R A  L  RQV     G ++
Sbjct: 624 LASSGDVYSWGSGDGGRLGH----GDTSAKEL------PTRIA-ALADRQVTGVFCGSSY 672

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQE 197
           S  +T  G ++TWG+        G+ +   VP  V  L+  +++ V    G  H+L + E
Sbjct: 673 SAAITASGELYTWGRGTYGRLGHGNSEDKYVPTLVTALKAHRVVHVALGCGDAHSLCVTE 732

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            G  +AWG+ ++G+LG       S P+ V       +V + +G   S ALT +G VY WG
Sbjct: 733 AGLAFAWGDGDFGKLGNESCVGTSVPVQVDLPQASCVVKVFSGSQFSVALTREGTVYTWG 792

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +G  GRLG G+++ S   VP+ V  L G+ IV ++ G  H +ALT  G ++ +GR D  +
Sbjct: 793 KGHGGRLGHGNSEHSP--VPKMVQALEGKKIVDLAVGLAHCLALTASGELYGWGRNDFQQ 850

Query: 318 L 318
           +
Sbjct: 851 I 851



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF----H 191
           VRQ+        +LT  G V           + + + P +V+GLE   ++ + A     H
Sbjct: 565 VRQIVCAENCVYILTDSGTVLYLSHAI---SMTEDNYPAQVKGLE-CTIVQLAAHCEGRH 620

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            LAL   G +++WG+ + G+LG GDT  +  P  +  L+   +  +  G  +S A+T  G
Sbjct: 621 VLALASSGDVYSWGSGDGGRLGHGDTSAKELPTRIAALADRQVTGVFCGSSYSAAITASG 680

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS--CGGTHSVALTRDGHIFS 309
           E+Y WGRG +GRLG G+++   K VP  V  L    +V V+  CG  HS+ +T  G  F+
Sbjct: 681 ELYTWGRGTYGRLGHGNSE--DKYVPTLVTALKAHRVVHVALGCGDAHSLCVTEAGLAFA 738

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPI 334
           +G GD G+LG    V T  P++V +
Sbjct: 739 WGDGDFGKLGNESCVGTSVPVQVDL 763



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 32/236 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +AS+  + +WGSG+ G+LG G+   +E    + AL   +V  V  GS  S AI   G+  
Sbjct: 624 LASSGDVYSWGSGDGGRLGHGDTSAKELPTRIAALADRQVTGVFCGSSYSAAITASGELY 683

Query: 61  T----------------ENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNE 102
           T                + +P+ V AL   ++V  A+  G  H L V + G A+AWG  +
Sbjct: 684 TWGRGTYGRLGHGNSEDKYVPTLVTALKAHRVVHVALGCGDAHSLCVTEAGLAFAWGDGD 743

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           +G+ G E       G  +   + +PQ       V +V +G   SV LTREG V+TWG+  
Sbjct: 744 FGKLGNE----SCVGTSVPVQVDLPQASC----VVKVFSGSQFSVALTREGTVYTWGKGH 795

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
                 G+ +   VP  VQ LE  K++  AVG  H LAL   G L+ WG N++ Q+
Sbjct: 796 GGRLGHGNSEHSPVPKMVQALEGKKIVDLAVGLAHCLALTASGELYGWGRNDFQQI 851



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 12/207 (5%)

Query: 136 VRQVAAG--GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAV 187
           + Q+AA   G H + L   G V++WG         GD     +P R+  L   QV  +  
Sbjct: 609 IVQLAAHCEGRHVLALASSGDVYSWGSGDGGRLGHGDTSAKELPTRIAALADRQVTGVFC 668

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA--AGGWHST 245
           G+ ++ A+   G L+ WG   YG+LG G+++ +  P  V  L    +V +A   G  HS 
Sbjct: 669 GSSYSAAITASGELYTWGRGTYGRLGHGNSEDKYVPTLVTALKAHRVVHVALGCGDAHSL 728

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            +T+ G  + WG G+ G+LG  +       VP +V+L     +V+V  G   SVALTR+G
Sbjct: 729 CVTEAGLAFAWGDGDFGKLG--NESCVGTSVPVQVDLPQASCVVKVFSGSQFSVALTREG 786

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            ++++G+G  GRLG+G    +  P  V
Sbjct: 787 TVYTWGKGHGGRLGHGNSEHSPVPKMV 813



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 121/272 (44%), Gaps = 32/272 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG GEDG+LG GN +  +   ++++L    V  +  GS +S  I   G   
Sbjct: 4191 LSSDGEVFSWGEGEDGKLGHGNRDSYDRPKLIESLSGIGVVDIACGSAHSACITIQGHVL 4250

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   + +  A G      L + D    ++WG  +
Sbjct: 4251 TWGKGRYGRLGHGDSEDQLQPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGD 4310

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G    R    G  +   I         L V +V  G   SV LTR G V+TWG+  
Sbjct: 4311 YGKLG----RGGSDGCKVPMKI----ESLAGLGVTKVECGSQFSVALTRSGSVYTWGKGD 4362

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G+   +  P +V  L+  K+I++  G+ H +A  + G ++ WG+N+ GQLG G 
Sbjct: 4363 YHRLGHGNTDHVRRPKKVAALQGKKIISIATGSLHCVACSDAGEVFTWGDNDEGQLGDGT 4422

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
                 +P  VQ L G  +V +  G  H+ AL+
Sbjct: 4423 VSAIQRPRLVQSLQGKHIVKVICGSAHTLALS 4454



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 106/264 (40%), Gaps = 72/264 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
            + S+  +  WG GE G+LG G+N  +    +V AL+ ++V  V  GSR++  +C      
Sbjct: 3182 ITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTALQDHRVVQVACGSRDAQTLCLTEDGL 3241

Query: 55   -------DDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                   D GK     ++  +IP QV+ L+   ++Q   G    LA+   G  + WG  +
Sbjct: 3242 VFSWGDGDFGKLGRGGSEGCSIPHQVDRLNGVGVMQIECGAQFSLALTKAGEVWTWGKGD 3301

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G        T + +R+   I      K+I   VA G  H + +T  G V+ W    
Sbjct: 3302 YYRLGH------GTDQHVRKPTPIQGLRGKKVI--HVAVGALHCLAVTDSGQVYAW---- 3349

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                      G+N++GQ G+G+T    +
Sbjct: 3350 ------------------------------------------GDNDHGQQGSGNTIVNKK 3367

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTA 246
            P  V GL G+ +  +A G  HS A
Sbjct: 3368 PSLVLGLDGIFVNRVACGSSHSVA 3391



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 40/166 (24%)

Query: 8   IAWGSGEDGQLG----IGNN-----EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            AWG G+ G+LG    +G +     +  +  CVVK         V +GS+ S+A+  +G 
Sbjct: 737 FAWGDGDFGKLGNESCVGTSVPVQVDLPQASCVVK---------VFSGSQFSVALTREGT 787

Query: 59  TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
             T                  +P  V AL   KIV  A+G  HCLA+   G  Y WG N+
Sbjct: 788 VYTWGKGHGGRLGHGNSEHSPVPKMVQALEGKKIVDLAVGLAHCLALTASGELYGWGRND 847

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           + Q   E   +D    I+   I+      P L V  +AAG   S+ 
Sbjct: 848 FQQICPECVTRDP---IITAPILT---TPPTLRVAGMAAGVAQSLF 887



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 252  EVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            +V  WG  +  +LG     K SK+ +P   ++L+    + ++ G      +++DG +++ 
Sbjct: 3029 KVLVWGLNDKEQLG---GLKGSKVKLPTYSSVLSQLKPIHIAGGSKSLFIVSQDGKLYAC 3085

Query: 311  GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC--GGRHTLAI 365
            G G +GRLG G       P +VPI              +++ K VA   GG+H +A+
Sbjct: 3086 GEGTNGRLGLGHNNNVPTPKQVPIL------------SQYVVKKVAVHSGGKHAMAL 3130


>gi|432906474|ref|XP_004077549.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Oryzias
           latipes]
          Length = 1059

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 178/352 (50%), Gaps = 37/352 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDGKT---- 59
           ++ WG+   GQLG+G  +E E V   +  E +   +VR V  G R++  + +DG      
Sbjct: 1   MLCWGNASYGQLGLGGIDE-EIVVEPRKCEFFHGKRVRDVGCGRRHTAFLLEDGTVYTCG 59

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     K+   P QV AL    IV  + G  H LA++D+G+ ++WG    GQ G  
Sbjct: 60  CNDLGQLGHEKSRKKPEQVVALDAQIIVALSCGESHTLALNDKGQVFSWGLGSDGQLG-- 117

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-- 167
               ++  R+ R       +    + V QVA G  HS+ L++ GH+++WGQ    G +  
Sbjct: 118 LNNFEECIRVPRN-----IKSLSDVQVAQVACGYWHSLALSKGGHIFSWGQN-RYGQLGL 171

Query: 168 ----KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
               + ISVP  +Q L+ +    IA G  H+ AL   GA++ WG N++GQLG  DT  R 
Sbjct: 172 GMTGQSISVPQHLQSLQGIPFAQIAAGGAHSFALTLSGAVFGWGRNKFGQLGLNDTNDRC 231

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ L    ++ I+ G  H+ ALT +G V+ +G G +G+L  G N  + ++ P+KV 
Sbjct: 232 FPALLKALRSQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTNHEVNPRKVF 289

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            L G  + Q++CG  H++A T   G + SFG G +G+LG         P  V
Sbjct: 290 ELMGNVVTQIACGRQHTLAFTPSSGKMDSFGLGGNGQLGTRSTCNRKSPAPV 341



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++  WG  + GQLG+ +  +R +  ++KAL   +V  +  G  ++ A+  +G        
Sbjct: 210 AVFGWGRNKFGQLGLNDTNDRCFPALLKALRSQRVIYISCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGNEYGQCG 107
                    T  E  P +V  L    + Q A G  H LA     G+  ++G    GQ G
Sbjct: 270 GYGQLGHNSTNHEVNPRKVFELMGNVVTQIACGRQHTLAFTPSSGKMDSFGLGGNGQLG 328


>gi|73952408|ref|XP_536160.2| PREDICTED: E3 ubiquitin-protein ligase HERC2 isoform 1 [Canis lupus
            familiaris]
          Length = 4837

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3956 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4015

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4016 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4075

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4076 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4127

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4128 HSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4187

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4245

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4246 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4301

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4302 Q--GKKVNR------VACGSAHTLA---WSTSK 4323



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-LSSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3259

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3260 IVH-VAVGALHCLAVTD 3275



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYACGEATNGRLGLGLSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4057 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4084

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4085 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4140

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4141 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4187

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4247

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4248 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4305

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4306 VNRVACGSAHTLA 4318



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3955 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4014

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4015 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4074

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4075 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4129



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|397520495|ref|XP_003830352.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Pan paniscus]
          Length = 979

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N ++     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|281354478|gb|EFB30062.1| hypothetical protein PANDA_019422 [Ailuropoda melanoleuca]
          Length = 4814

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3933 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3992

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3993 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4052

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4053 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4104

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4105 HSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4164

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4165 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4222

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4223 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4278

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4279 Q--GKKVNR------VACGSAHTLA---WSTSK 4300



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2959 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3009

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3010 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3069

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3070 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3129

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3130 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3187

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3188 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3236

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3237 IVH-VAVGALHCLAVTD 3252



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  I++ A    G H LA+  
Sbjct: 431 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIIKIAAHSDGHHYLALAA 490

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 491 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 535

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 536 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 595

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 596 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 655

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 656 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 713

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 714 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 753



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 420 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 459

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + I++  A + G H + L   G V++WG             P  + K I
Sbjct: 460 LAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 519

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 520 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 579

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 580 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 637

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 638 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 686

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 687 KKVID-VAAGSTHCLALTE 704



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2991 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3046

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3047 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3106

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3107 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3151

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3152 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3207

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3208 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3267

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3268 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3303



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4034 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4061

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4062 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4117

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4118 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4164

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4165 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4224

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4225 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4282

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4283 VNRVACGSAHTLA 4295



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 488 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 547

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 548 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 607

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 608 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 659

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 660 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 719

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 720 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 753



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3932 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3991

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3992 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4051

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4052 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4106



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3092 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3151

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3152 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3211

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3212 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3263

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3264 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3301


>gi|119578073|gb|EAW57669.1| hCG2006901, isoform CRA_f [Homo sapiens]
          Length = 1319

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 758  TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 817

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 818  AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 877

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 878  HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 929

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 930  HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 989

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 990  CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 1047

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 1048 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 1103

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 1104 Q--GKKVNR------VACGSAHTLA---WSTSK 1125



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 21/192 (10%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           ++++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ +A 
Sbjct: 15  KRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVAC 74

Query: 240 GG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG   
Sbjct: 75  GSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECGAQF 132

Query: 298 SVALTRDG-----HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
           S+ALT+ G      ++++G  DHG+ G G      +P  V            G++ + I 
Sbjct: 133 SLALTKSGVVWTWQVYAWGDNDHGQQGNGTTTVNRKPTLV-----------QGLEGQKIT 181

Query: 353 KLVACGGRHTLA 364
           + VACG  H++A
Sbjct: 182 R-VACGSSHSVA 192



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 86/148 (58%), Gaps = 16/148 (10%)

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P  ++ L    + DIA G  HS ALT  GE+Y WG GE+GRLG GDN  ++++ P+ V 
Sbjct: 5   KPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDN--TTQLKPKMVK 62

Query: 282 LLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG G      +   +P NI   
Sbjct: 63  VLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRG----GSEGCNIPQNI--E 116

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           R  G GV +      + CG + +LA+ +
Sbjct: 117 RLNGQGVCQ------IECGAQFSLALTK 138



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  V AG  +S  +   G   
Sbjct: 859  LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLY 918

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   ++V  A G      L + D    ++WG  +
Sbjct: 919  TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 978

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 979  YGKLGR--GGSDGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 1030

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 1031 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 1090

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            T    +P  V  L G  +  +A G  H+ A
Sbjct: 1091 TNAIQRPRLVAALQGKKVNRVACGSAHTLA 1120



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 22/191 (11%)

Query: 132 PKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
           P+LI       +R +A G +HS  LT  G ++TWG         GD      P  V+ L 
Sbjct: 6   PRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLL 65

Query: 181 QVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
             ++I V         LAL ++G +++WG+ ++G+LG G ++  + P  ++ L+G  +  
Sbjct: 66  GHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQ 125

Query: 237 IAAGGWHSTALTDDG-----EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           I  G   S ALT  G     +VY WG  +HG+ G G    + K  P  V  L G+ I +V
Sbjct: 126 IECGAQFSLALTKSGVVWTWQVYAWGDNDHGQQGNGTTTVNRK--PTLVQGLEGQKITRV 183

Query: 292 SCGGTHSVALT 302
           +CG +HSVA T
Sbjct: 184 ACGSSHSVAWT 194



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 29/201 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G          ++++  +
Sbjct: 6   PRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVK--V 63

Query: 125 VIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPGDIKQI--------SVPV 174
           ++  R      V QVA G     ++ LT EG V++WG     GD  ++        ++P 
Sbjct: 64  LLGHR------VIQVACGSRDAQTLALTDEGLVFSWGD----GDFGKLGRGGSEGCNIPQ 113

Query: 175 RVQGL--EQVKLIAVGAFHNLALQEDGALW-----AWGNNEYGQLGTGDTQPRSQPIPVQ 227
            ++ L  + V  I  GA  +LAL + G +W     AWG+N++GQ G G T    +P  VQ
Sbjct: 114 NIERLNGQGVCQIECGAQFSLALTKSGVVWTWQVYAWGDNDHGQQGNGTTTVNRKPTLVQ 173

Query: 228 GLSGLTLVDIAAGGWHSTALT 248
           GL G  +  +A G  HS A T
Sbjct: 174 GLEGQKITRVACGSSHSVAWT 194



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 56/176 (31%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
           G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 757 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 816

Query: 233 -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                            TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 817 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 876

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+
Sbjct: 877 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 930



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
           + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 30  LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 89

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG-----RAYA 97
                           ++  NIP  +  L+   + Q   G    LA+   G     + YA
Sbjct: 90  VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWQVYA 149

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
           WG N++GQ G      + T  + R+  ++      K  + +VA G +HSV  T
Sbjct: 150 WGDNDHGQQG------NGTTTVNRKPTLVQGLEGQK--ITRVACGSSHSVAWT 194


>gi|442318560|ref|YP_007358581.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441486202|gb|AGC42897.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 866

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 168/336 (50%), Gaps = 30/336 (8%)

Query: 12  SGEDGQLGIGNNEEREWVCVVKALEP--YKVRSVVAGS------RNSLAICDDGKTKTEN 63
           +G   + GI     R +V    ++ P  Y    V +G        N      +G+    N
Sbjct: 127 NGNRAKCGITREVLRNFVQFCPSVSPGVYHTLEVKSGGSLWAWGNNPSGQLGNGQRTQRN 186

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            P++V  L+  ++V A+ G  H +AV + G  + WG N YGQ G       D    LR  
Sbjct: 187 APTRVRGLN--QVVSASAGAEHSVAVTEDGSVWTWGSNAYGQLG-------DGTNTLR-- 235

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGL 179
             +P +      V  VAA G+ +V L  +G VWTWG         G      +P++V  L
Sbjct: 236 -AVPVQVPGMSDVVAVAAAGSRTVALKADGTVWTWGINSSGELGDGTTTHSLLPIQVPNL 294

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
             V  IA G +H LA+++DG+ W+WGNN YGQLG G T  R +P+ V GL+G+    ++ 
Sbjct: 295 SGVTNIAAGLWHTLAVKKDGSAWSWGNNAYGQLGDGTTLNRLRPVLVAGLTGVRA--LSG 352

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  H+ AL  DG  +GWG    G+LG G    SS  +P +V  L     V++  GG H++
Sbjct: 353 GVVHTVALKWDGTAWGWGYNSAGQLGNGTTTNSS--IPVQVAAL--TQAVEIDAGGYHTL 408

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           A  +DG ++++G   +G LG G   ++  P++VP++
Sbjct: 409 ARRQDGTLYAWGDNFYGALGTGNTTSSSVPVQVPLS 444



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 158/356 (44%), Gaps = 43/356 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           MA   ++ AWG   +G+LG G   +R       A+    +     GS +S+A+   G   
Sbjct: 465 MAQVHTLFAWGHNTNGELGDGTTTQR---TSPTAVVVSGIVKTAGGSAHSVALGAGGAVW 521

Query: 61  TENIPSQVNALSN---------------TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
           T    +    L N               + ++  A G  H +A+   G   AWG N YGQ
Sbjct: 522 TWGY-NAYGQLGNGTTTQVVTPTQLPGMSGVIDVAAGVNHTVALSADGTVAAWGYNAYGQ 580

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP-- 163
            G        T          PQ       V  ++AG TH+V L  +G VW WG      
Sbjct: 581 LGNGTTANQLT----------PQSVPELDGVTAISAGSTHTVALKADGTVWAWGSNLYGQ 630

Query: 164 --PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G     S PV+V  LE V  IA G FH +A++ DG LW WG    GQLG G T  +S
Sbjct: 631 LGDGTFTHRSSPVQVPSLENVVSIAAGHFHTVAVKGDGTLWVWGYGPQGQLGLGTTTNQS 690

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD--NDKSSKMVPQK 279
            P+ V GL     V IAAGG+H+ AL  +G+V+ WG    G+LG        S  +VP  
Sbjct: 691 VPVQVSGLG--HAVAIAAGGYHTVALLANGQVWTWGYNSSGQLGDATIIQRYSPVLVPGL 748

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            N++A      ++ GG  +  L RDG +++FG   +G+LG G   +   P    +N
Sbjct: 749 TNVIA------LAAGGYTTAVLKRDGTVWAFGYNPNGQLGDGTTTSRSSPTATLMN 798



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 131/306 (42%), Gaps = 39/306 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           +++  ++ AWG    GQLG G    +     V  L+   V ++ AGS +++A+       
Sbjct: 564 LSADGTVAAWGYNAYGQLGNGTTANQLTPQSVPELD--GVTAISAGSTHTVALKADGTVW 621

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P QV +L N  +V  A G +H +AV   G  + WG    G
Sbjct: 622 AWGSNLYGQLGDGTFTHRSSPVQVPSLEN--VVSIAAGHFHTVAVKGDGTLWVWGYGPQG 679

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPW 162
           Q G                  +P + +       +AAGG H+V L   G VWTWG     
Sbjct: 680 QLGLGTTTNQS----------VPVQVSGLGHAVAIAAGGYHTVALLANGQVWTWGYNSSG 729

Query: 163 PPGD--IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             GD  I Q   PV V GL  V  +A G +    L+ DG +WA+G N  GQLG G T  R
Sbjct: 730 QLGDATIIQRYSPVLVPGLTNVIALAAGGYTTAVLKRDGTVWAFGYNPNGQLGDGTTTSR 789

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S P      S   +VD+++G  H   L  D  V   G    G+L  GD   + +  P +V
Sbjct: 790 SSPTATLMNS---VVDLSSGVNHMMGLRKDAWVRACGYNSAGQL--GDGTTTQRPTPVQV 844

Query: 281 NLLAGE 286
             L G+
Sbjct: 845 TNLPGD 850


>gi|431917309|gb|ELK16842.1| Putative E3 ubiquitin-protein ligase HERC2 [Pteropus alecto]
          Length = 3660

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 186/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            ++  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 2789 TVYGWGHNHRGQLGGVEGAKVKVPTPCEALAALRPAQLIGGEQTLFAVTADGKLYATGYG 2848

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 2849 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 2908

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 2909 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGGLYTWGKGRYGRLG 2960

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ V    G    L L ED  +W+WG+ +YG+LG G +  
Sbjct: 2961 HSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTEDDTVWSWGDGDYGKLGRGGSDG 3020

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ V  L+GL  V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3021 CKVPMKVDALTGLGAVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3078

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3079 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 3134

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 3135 Q--GKKVNR------VACGSAHTLA---WSTSK 3156



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 37/318 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS    VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 1816 KVPSFSETLSALNAVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-VSSG 1866

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-----VP 173
             + +P++       +V++VA  +GG H+  LT +G V++WG+    G +   S      P
Sbjct: 1867 TVPVPRQVTALSSYVVKKVAVHSGGRHATALTADGKVFSWGE-GDDGKLGHFSRXNCDKP 1925

Query: 174  VRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
              ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G
Sbjct: 1926 RLIEALKSRRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLVG 1985

Query: 232  LTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
              +V +A G     + ALTD+G V+ WG G+ G+LG G ++  +  VPQ +  L G+ + 
Sbjct: 1986 HRVVQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--VPQNIERLNGQGVC 2043

Query: 290  QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            Q+ CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  +
Sbjct: 2044 QIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGK 2092

Query: 350  WIAKLVACGGRHTLAIVE 367
             I   VA G  H LA+ +
Sbjct: 2093 KIVH-VAVGALHCLAVTD 2109



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 156/334 (46%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     V   V AL  Y V+ V   +G R++ A+  DGK  +  
Sbjct: 1848 VYACGEATNGRLGLGVSSGTVPVPRQVTALSSYVVKKVAVHSGGRHATALTADGKVFSWG 1907

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL + +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 1908 EGDDGKLGHFSRXNCDKPRLIEALKSRRIRDIACGSSHSAALTSSGELYTWGLGEYGRLG 1967

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 1968 H----GDNTTQL-----------KPKMVKVLVGHRVVQVACGSRDAQTLALTDEGLVFSW 2012

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        +VP  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 2013 GD----GDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2068

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 2069 YFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQGNGT 2128

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2129 TTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 2160



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 135/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 2890 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 2917

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 2918 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGGLYTWGKGRYGRLGHSDSEDQLKPKLV 2973

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 2974 EALQGHRVVDVAC---------GSGDAQTLCLTEDDTVWSWGD----GDYGKLGRGGSDG 3020

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP++V  L  +  + V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3021 CKVPMKVDALTGLGAVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3080

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3081 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 3138

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 3139 VNRVACGSAHTLA 3151



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 2788 GTVYGWGHNHRGQLGGVEGAKVKVPTPCEALAALRPAQLIGGEQTLFAVTADGKLYATGY 2847

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 2848 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 2907

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 2908 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGGLYTWGKGRYGRLGHS 2962



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 1949 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLVGHRVVQVACGSRDAQTLALTDEGL 2008

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  N+P  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2009 VFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2068

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2069 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 2120

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2121 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 2158


>gi|344275073|ref|XP_003409338.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Loxodonta africana]
          Length = 1049

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N K+     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSLAD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGLDCKKQASPKLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGLD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPKLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|301787735|ref|XP_002929284.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like
            [Ailuropoda melanoleuca]
          Length = 4837

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3956 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4015

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4016 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4075

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4076 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4127

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4128 HSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4187

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4245

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4246 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4301

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4302 Q--GKKVNR------VACGSAHTLA---WSTSK 4323



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3259

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3260 IVH-VAVGALHCLAVTD 3275



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  I++ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIIKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + I++  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4057 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4084

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4085 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4140

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4141 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4187

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4247

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4248 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4305

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4306 VNRVACGSAHTLA 4318



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3955 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4014

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4015 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4074

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4075 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4129



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|114630760|ref|XP_001167652.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 4
           [Pan troglodytes]
          Length = 979

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N ++     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|354489070|ref|XP_003506687.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like [Cricetulus griseus]
          Length = 4836

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3955 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4014

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4015 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4074

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4075 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4126

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4127 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4186

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4244

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4245 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4300

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4301 Q--GKKVNR------VACGSAHTLA---WSTSK 4322



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 3039

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 3040 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 3096

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3097 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3156

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3157 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3214

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3215 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3262

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3263 VAVGALHCLAVTD 3275



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPTALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 443 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4056 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4083

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4084 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4139

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4140 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4186

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4246

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4247 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4304

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4305 VNRVACGSAHTLA 4317



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPTALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3954 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4013

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4014 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4073

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4074 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4128



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|229442359|gb|AAI72911.1| hect domain and RLD 2 [synthetic construct]
          Length = 2427

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 1546 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 1605

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 1606 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 1665

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 1666 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 1717

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 1718 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 1777

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 1778 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 1835

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 1836 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 1891

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 1892 Q--GKKVNR------VACGSAHTLA---WSTSK 1913



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 574 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 624

Query: 123 DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
            + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 625 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 684

Query: 175 RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 685 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 744

Query: 233 TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 745 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 802

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 803 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 851

Query: 351 IAKLVACGGRHTLAIVE 367
           I   VA G  H LA+ +
Sbjct: 852 IVH-VAVGALHCLAVTD 867



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7   IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
           + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 606 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 661

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
            +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 662 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 721

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
           G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 722 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 766

Query: 155 VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
           V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 767 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 822

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 823 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 882

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 883 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 918



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 1647 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 1674

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 1675 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 1730

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 1731 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 1777

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 1778 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 1837

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 1838 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 1895

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 1896 VNRVACGSAHTLA 1908



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 56/176 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 1545 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 1604

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 1605 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 1664

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+
Sbjct: 1665 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 1718



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
           + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 707 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 766

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           ++  NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 767 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 826

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 827 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 878

Query: 161 --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                 G       P  VQGLE  ++  +A G+ H++A
Sbjct: 879 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 916


>gi|383453816|ref|YP_005367805.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
 gi|380728295|gb|AFE04297.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
          Length = 748

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 171/343 (49%), Gaps = 39/343 (11%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI---- 64
           AWG  + GQLG G  ++      V   +   V SV +G R++ A+  DG   T  +    
Sbjct: 422 AWGDNQQGQLGNGTQQDSSLPLPVNLTD---VISVASGYRHTAALRSDGTVWTWGMNRFG 478

Query: 65  ----------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
                     P+ V  +    +   A G  H LA+   G  +AWG N YGQ G       
Sbjct: 479 QLGEGTVTDRPTPVQVVGLGGVTAIATGDNHSLALRSNGTVWAWGFNRYGQLG------- 531

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
           D   + RR    P + +    +  +AAGG+HS+ L  +G VW +G  +      G     
Sbjct: 532 DGTAVDRRQ---PVQASGLSNIVAIAAGGSHSLALRSDGTVWAFGYNFDGQLGNGTRTWT 588

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            VPV+  GL  V  +A G+ ++LAL+ DG +WAWG N  GQLG G TQ  +QP+ V GLS
Sbjct: 589 LVPVQAVGLSSVVSLAAGSLYSLALRADGTVWAWGYNASGQLGVGTTQGSAQPLQVPGLS 648

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG-EDIV 289
           G+T   IAAG +HS AL  DG V+ WG    G+LG G +  + ++ P    L+AG  + V
Sbjct: 649 GIT--SIAAGSYHSLALRSDGWVWAWGFNFEGQLGNGTS--TPRLSP---GLVAGMSNAV 701

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  G  HS+A+  DG ++++G    G+LG G       P++V
Sbjct: 702 AIIAGDQHSLAMKADGTVWAWGLNIKGQLGTGDTTEAWFPVQV 744



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 185/387 (47%), Gaps = 70/387 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
           ++ AWG    GQLG G N +R     V   +   VR++VAG+ +SLA+  DG      +N
Sbjct: 270 TVWAWGHNAYGQLGDGTNTQRTQPVSVSLTD---VRTLVAGNYHSLAVRTDGAVWAWGDN 326

Query: 64  IPSQV---NALSNTKIVQAAIGGW--------HCLAVDDQGRAYAWGGNEYGQCGE---E 109
              Q+   N  S+   +QA + G         H +A+   G A++WG N +GQ G+   E
Sbjct: 327 RYRQLGTGNLTSSPLPLQAGMTGGVTLVAGYRHSVALGADGTAWSWGDNVFGQLGDTTFE 386

Query: 110 PE------------RKDDT------------GRI--------------LRRDIVIPQRCA 131
           P             R D T            GR+               ++D  +P    
Sbjct: 387 PRMAPVQVSGLALGRADATSGQLHTVMLGANGRLWAWGDNQQGQLGNGTQQDSSLPLPVN 446

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV 187
              ++  VA+G  H+  L  +G VWTWG         G +     PV+V GL  V  IA 
Sbjct: 447 LTDVI-SVASGYRHTAALRSDGTVWTWGMNRFGQLGEGTVTDRPTPVQVVGLGGVTAIAT 505

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H+LAL+ +G +WAWG N YGQLG G    R QP+   GLS   +V IAAGG HS AL
Sbjct: 506 GDNHSLALRSNGTVWAWGFNRYGQLGDGTAVDRRQPVQASGLS--NIVAIAAGGSHSLAL 563

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVP-QKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
             DG V+ +G    G+LG G   ++  +VP Q V L     +V ++ G  +S+AL  DG 
Sbjct: 564 RSDGTVWAFGYNFDGQLGNGT--RTWTLVPVQAVGL---SSVVSLAAGSLYSLALRADGT 618

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           ++++G    G+LG G    + QP++VP
Sbjct: 619 VWAWGYNASGQLGVGTTQGSAQPLQVP 645



 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 175/352 (49%), Gaps = 48/352 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G + ++     V  L   +V SV AG + SLA+            
Sbjct: 70  TVFAWGFNRLGQLGDGTSRDKASPVQVAGLT--QVTSVAAGDQYSLALDADGAVWAWGDN 127

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG   +  +P +V+ALSN  +V  A G  H LA+   G  +AWG N   Q G+ 
Sbjct: 128 ASGQLGDGTLTSRLLPQRVSALSN--VVSLASGFAHVLALRADGTVWAWGDNRNNQLGD- 184

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPP 164
                  G + R    +P +      V  V AGG+ S+ L  +G +W W     GQ    
Sbjct: 185 -------GTLTRSS--VPLQVPGLSGVVAVVAGGSSSLALRADGTLWAWGDNRYGQLGDG 235

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
             +++I+ PV+V  L+ V  ++VGA+H LAL+ DG +WAWG+N YGQLG G    R+QP+
Sbjct: 236 TTVRRIT-PVQVASLDSVVSVSVGAYHALALRADGTVWAWGHNAYGQLGDGTNTQRTQPV 294

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V      TLV   AG +HS A+  DG V+ WG   + +LG G  + +S  +P +  +  
Sbjct: 295 SVSLTDVRTLV---AGNYHSLAVRTDGAVWAWGDNRYRQLGTG--NLTSSPLPLQAGMTG 349

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           G  +V    G  HSVAL  DG  +S+G    G+LG     TT +P   P+ +
Sbjct: 350 GVTLV---AGYRHSVALGADGTAWSWGDNVFGQLGD----TTFEPRMAPVQV 394



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 178/381 (46%), Gaps = 58/381 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G    R     V AL    V S+ +G  + LA+            
Sbjct: 120 AVWAWGDNASGQLGDGTLTSRLLPQRVSALS--NVVSLASGFAHVLALRADGTVWAWGDN 177

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG     ++P QV  LS   +V    GG   LA+   G  +AWG N YGQ G+ 
Sbjct: 178 RNNQLGDGTLTRSSVPLQVPGLSG--VVAVVAGGSSSLALRADGTLWAWGDNRYGQLGD- 234

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G  +RR  + P + A    V  V+ G  H++ L  +G VW WG         G
Sbjct: 235 -------GTTVRR--ITPVQVASLDSVVSVSVGAYHALALRADGTVWAWGHNAYGQLGDG 285

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q + PV V  L  V+ +  G +H+LA++ DGA+WAWG+N Y QLGTG+    S P+P
Sbjct: 286 TNTQRTQPVSVS-LTDVRTLVAGNYHSLAVRTDGAVWAWGDNRYRQLGTGNLT--SSPLP 342

Query: 226 VQ-GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           +Q G++G   V + AG  HS AL  DG  + WG    G+L  GD     +M P +V+ LA
Sbjct: 343 LQAGMTG--GVTLVAGYRHSVALGADGTAWSWGDNVFGQL--GDTTFEPRMAPVQVSGLA 398

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
                  + G  H+V L  +G ++++G    G+LG G +  +        ++P P N  D
Sbjct: 399 -LGRADATSGQLHTVMLGANGRLWAWGDNQQGQLGNGTQQDS--------SLPLPVNLTD 449

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
            +        VA G RHT A+
Sbjct: 450 VIS-------VASGYRHTAAL 463



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/263 (36%), Positives = 133/263 (50%), Gaps = 20/263 (7%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V+ A+G +H LAV   G  +AWG N  GQ G+             RD   P + A    V
Sbjct: 53  VRLALGQYHSLAVHSDGTVFAWGFNRLGQLGDGTS----------RDKASPVQVAGLTQV 102

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
             VAAG  +S+ L  +G VW WG         G +    +P RV  L  V  +A G  H 
Sbjct: 103 TSVAAGDQYSLALDADGAVWAWGDNASGQLGDGTLTSRLLPQRVSALSNVVSLASGFAHV 162

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL+ DG +WAWG+N   QLG G     S P+ V GLSG  +V + AGG  S AL  DG 
Sbjct: 163 LALRADGTVWAWGDNRNNQLGDGTLTRSSVPLQVPGLSG--VVAVVAGGSSSLALRADGT 220

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WG   +G+L  GD     ++ P +V  L  + +V VS G  H++AL  DG ++++G 
Sbjct: 221 LWAWGDNRYGQL--GDGTTVRRITPVQVASL--DSVVSVSVGAYHALALRADGTVWAWGH 276

Query: 313 GDHGRLGYGRKVTTGQPMEVPIN 335
             +G+LG G      QP+ V + 
Sbjct: 277 NAYGQLGDGTNTQRTQPVSVSLT 299



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 10/223 (4%)

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
           D  G    R+  + QR   +L   ++A G  HS+ +  +G V+ WG         G  + 
Sbjct: 30  DLPGAAAPREATVRQRAGERLPPVRLALGQYHSLAVHSDGTVFAWGFNRLGQLGDGTSRD 89

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            + PV+V GL QV  +A G  ++LAL  DGA+WAWG+N  GQLG G    R  P  V  L
Sbjct: 90  KASPVQVAGLTQVTSVAAGDQYSLALDADGAVWAWGDNASGQLGDGTLTSRLLPQRVSAL 149

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           S   +V +A+G  H  AL  DG V+ WG   + +LG G   +SS  VP +V  L+G  +V
Sbjct: 150 S--NVVSLASGFAHVLALRADGTVWAWGDNRNNQLGDGTLTRSS--VPLQVPGLSG--VV 203

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            V  GG+ S+AL  DG ++++G   +G+LG G  V    P++V
Sbjct: 204 AVVAGGSSSLALRADGTLWAWGDNRYGQLGDGTTVRRITPVQV 246



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 111/249 (44%), Gaps = 34/249 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG    GQLG G   +R     V+A     + ++ AG  +SLA+  DG   
Sbjct: 513 LRSNGTVWAWGFNRYGQLGDGTAVDRR--QPVQASGLSNIVAIAAGGSHSLALRSDGTVW 570

Query: 59  -------------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T+T   +P Q   LS+  +V  A G  + LA+   G  +AWG N  G
Sbjct: 571 AFGYNFDGQLGNGTRTWTLVPVQAVGLSS--VVSLAAGSLYSLALRADGTVWAWGYNASG 628

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G    +         + + +P        +  +AAG  HS+ L  +G VW WG  +  
Sbjct: 629 QLGVGTTQGS------AQPLQVPGLSG----ITSIAAGSYHSLALRSDGWVWAWGFNFEG 678

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G       P  V G+     I  G  H+LA++ DG +WAWG N  GQLGTGDT   
Sbjct: 679 QLGNGTSTPRLSPGLVAGMSNAVAIIAGDQHSLAMKADGTVWAWGLNIKGQLGTGDTTEA 738

Query: 221 SQPIPVQGL 229
             P+ VQG+
Sbjct: 739 WFPVQVQGI 747


>gi|355694483|gb|AER99684.1| hect domain and RLD 2 [Mustela putorius furo]
          Length = 1082

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 202 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 261

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 262 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 321

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                  D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 322 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 373

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 374 HSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 433

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 434 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 491

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 492 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 547

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
           +  G  V+R      VACG  HTLA   W T +
Sbjct: 548 Q--GKKVNR------VACGSAHTLA---WSTSK 569



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG  EDG+LG GN    +   V+++L   +V  V AG  +S  +   G   
Sbjct: 303 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLY 362

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T                +  P  V AL   ++V  A G      L + D    ++WG  +
Sbjct: 363 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGD 422

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 423 YGKLGR--GGSDGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 474

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 475 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 534

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           T    +P  V  L G  +  +A G  H+ A
Sbjct: 535 TNAIQRPRLVAALQGKKVNRVACGSAHTLA 564



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 56/176 (31%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
           G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 201 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 260

Query: 233 -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                            TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 261 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 320

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+
Sbjct: 321 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 374


>gi|405965978|gb|EKC31310.1| Putative E3 ubiquitin-protein ligase HERC2 [Crassostrea gigas]
          Length = 5345

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 187/393 (47%), Gaps = 57/393 (14%)

Query: 10   WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----------- 58
            WG    GQLG  +  + +     +AL   +   +V G +   A+  +GK           
Sbjct: 4466 WGHNHRGQLGGVDGAKVKQPVSCEALAVTRPIQLVGGEQTLFAVTAEGKVFATGYGAGGR 4525

Query: 59   -----TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 T++ + P+Q+ ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G    
Sbjct: 4526 LGVGGTESVSHPTQLESIQHVFIKKLAVNSGGKHCLALSAEGEVYSWGEGEDGKLGHGNR 4585

Query: 112  RKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
               D  R+   LR   V+            +AAGG HS  +T  G ++TWG+        
Sbjct: 4586 SPCDRPRVIDSLRGKEVV-----------DIAAGGAHSACITANGELYTWGKGRYGRLGH 4634

Query: 165  GDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD +    P  V+ L+  +++ +    G    L + +D  +W+WG+ +YG+LG G +   
Sbjct: 4635 GDSEDQPRPKLVEALKSYRVVDMACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGC 4694

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
              P+ ++ L G  ++ +  G   S ALT  G VY WG+G++ RLG G +D   +  P+KV
Sbjct: 4695 KVPMKIETLQGQGVMKVECGSQFSVALTKSGSVYTWGKGDYHRLGHGSDDHVRR--PRKV 4752

Query: 281  NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            + L  + ++ V+CG  H VA T  G +FS+G  D G+LG G      +P  V   +    
Sbjct: 4753 SALQNKKVIDVACGSLHCVACTDTGEVFSWGDNDEGQLGDGTTNAIQRPRLVASLL---- 4808

Query: 341  NAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
              G  ++R      VACG  H+LA   W T ++
Sbjct: 4809 --GKKINR------VACGSAHSLA---WSTNKA 4830



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 166/318 (52%), Gaps = 37/318 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+  + LS  + VQ   G      V  +G+ YA        CGE    +   G I   
Sbjct: 3486 KLPTLNDNLSALRCVQIVGGSKSLFCVTQEGKVYA--------CGEATNGRLGLG-ITTG 3536

Query: 123  DIVIPQRCAP--KLIVRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-----VP 173
             + +P++     + ++++VA  +GG HS+ LT +G V++WG+    G +   S      P
Sbjct: 3537 TVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKVFSWGE-GDDGKLGHFSRWNCDKP 3595

Query: 174  VRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
              ++ L+  +V+ IA G+ H+ A+  +G L+ WG  EYG+LG GD   + +P  V+ L+ 
Sbjct: 3596 RLIEALKSKRVRDIACGSSHSAAITSNGDLYTWGLGEYGRLGHGDNTTQLKPKQVKALAH 3655

Query: 232  LTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
              +V +A G     + ALTD+G+VY WG G+ G+LG G ++  +  VP +V+ L  + + 
Sbjct: 3656 ERVVQVACGSRDAQTLALTDEGKVYSWGDGDFGKLGRGGSEGCN--VPHEVDRLRDQKVC 3713

Query: 290  QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            Q+ CG   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+  +
Sbjct: 3714 QIECGAQFSLALTKSGQVWTWGKGDYFRLGHGTDAHVRKPQIV-----------EGLKGK 3762

Query: 350  WIAKLVACGGRHTLAIVE 367
             I   VA G  H LA+ +
Sbjct: 3763 KIVH-VAVGALHCLAVTD 3779



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 130/233 (55%), Gaps = 22/233 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQ 196
           G H + LT +G V++WG         GD +    P  + GL  +QV  I  G+ +++AL 
Sbjct: 628 GKHYMGLTSDGEVFSWGNGDGGKLGHGDYQNHEEPALITGLSGKQVAKICCGSSYSVALT 687

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA--AGGWHSTALTDDGEVY 254
            +G +++WG   +G+LG G ++ ++ P+ ++   G  +VD+A  +G   + A+TD G VY
Sbjct: 688 SNGEVYSWGKGNFGRLGHGSSEDQTTPMLLKFFKGHRIVDVACGSGDAQTLAVTDSGAVY 747

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG G++G+LG G ND      P+ +  L G+D+V+V CG   S+ALT+ G ++++G+GD
Sbjct: 748 SWGDGDYGKLGRGGNDGCK--TPKVIEKLMGQDVVRVYCGNQFSMALTKSGAVYTWGKGD 805

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           + RLG+G +     P ++           + +  + + K +A G  H +AI E
Sbjct: 806 NYRLGHGTEDHARHPKQI-----------EALSSKKV-KDIAIGSLHCMAITE 846



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 156/325 (48%), Gaps = 46/325 (14%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G       V   + +L  Y ++ V   +G R+SLA+  DGK  +  
Sbjct: 3518 VYACGEATNGRLGLGITTGTVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKVFSWG 3577

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL + ++   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 3578 EGDDGKLGHFSRWNCDKPRLIEALKSKRVRDIACGSSHSAAITSNGDLYTWGLGEYGRLG 3637

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPG 165
                  D+T ++  + +   +  A + +V QVA G     ++ LT EG V++WG     G
Sbjct: 3638 ----HGDNTTQLKPKQV---KALAHERVV-QVACGSRDAQTLALTDEGKVYSWGD----G 3685

Query: 166  DIKQI--------SVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
            D  ++        +VP  V  L   K+  I  GA  +LAL + G +W WG  +Y +LG G
Sbjct: 3686 DFGKLGRGGSEGCNVPHEVDRLRDQKVCQIECGAQFSLALTKSGQVWTWGKGDYFRLGHG 3745

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
                  +P  V+GL G  +V +A G  H  A+TD G+V+ WG  +HG+ G G    + K 
Sbjct: 3746 TDAHVRKPQIVEGLKGKKIVHVAVGALHCLAVTDSGQVFAWGDNDHGQQGNGTTTVNRK- 3804

Query: 276  VPQKVNLLAGEDIVQVSCGGTHSVA 300
             P  V +L G  I +V+CG +HS+A
Sbjct: 3805 -PALV-VLEGYKISKVACGSSHSIA 3827



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 144/290 (49%), Gaps = 39/290 (13%)

Query: 92   QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            Q   + WG N+  Q G     K     +   D +   RC       Q+  G      +T+
Sbjct: 3463 QTNVFCWGLNDKDQLGGPKGSKIKLPTL--NDNLSALRCV------QIVGGSKSLFCVTQ 3514

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        +SVP ++  L Q  +K +AV  G  H+LAL  DG +
Sbjct: 3515 EGKVYACGEA-TNGRLGLGITTGTVSVPRQITSLSQYVIKKVAVHSGGRHSLALTTDGKV 3573

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T +G++Y WG GE+
Sbjct: 3574 FSWGEGDDGKLGHFSRWNCDKPRLIEALKSKRVRDIACGSSHSAAITSNGDLYTWGLGEY 3633

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P++V  LA E +VQV+CG     ++ALT +G ++S+G GD G+LG
Sbjct: 3634 GRLGHGDN--TTQLKPKQVKALAHERVVQVACGSRDAQTLALTDEGKVYSWGDGDFGKLG 3691

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL--VACGGRHTLAIVE 367
             G       P E              VDR    K+  + CG + +LA+ +
Sbjct: 3692 RGGSEGCNVPHE--------------VDRLRDQKVCQIECGAQFSLALTK 3727



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +++   + +WG GEDG+LG GN                             + CD     
Sbjct: 4563 LSAEGEVYSWGEGEDGKLGHGNR----------------------------SPCDR---- 4590

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  +++L   ++V  A GG H   +   G  Y WG   YG+ G    E + +    
Sbjct: 4591 ----PRVIDSLRGKEVVDIAAGGAHSACITANGELYTWGKGRYGRLGHGDSEDQPRPKLV 4646

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ +T + +VW+WG     GD  ++       
Sbjct: 4647 EALKSYRVVDMACG---------SGDAQTLCITDDDNVWSWGD----GDYGKLGRGGSDG 4693

Query: 171  -SVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP++++ L+   V  +  G+  ++AL + G+++ WG  +Y +LG G      +P  V 
Sbjct: 4694 CKVPMKIETLQGQGVMKVECGSQFSVALTKSGSVYTWGKGDYHRLGHGSDDHVRRPRKVS 4753

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
             L    ++D+A G  H  A TD GEV+ WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4754 ALQNKKVIDVACGSLHCVACTDTGEVFSWGDNDEGQLGDGTTNAIQR--PRLVASLLGKK 4811

Query: 288  IVQVSCGGTHSVA 300
            I +V+CG  HS+A
Sbjct: 4812 INRVACGSAHSLA 4824



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 141/303 (46%), Gaps = 40/303 (13%)

Query: 40  VRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V+ +    R  L +   GK      T       Q+N   + ++++ A    G H + +  
Sbjct: 577 VQQIACSERCCLILSKAGKVYMLYYTSLSPTLQQLNGFGDREVIRIASHPDGKHYMGLTS 636

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGT 144
            G  ++WG  + G+ G    +  +                P LI       V ++  G +
Sbjct: 637 DGEVFSWGNGDGGKLGHGDYQNHE---------------EPALITGLSGKQVAKICCGSS 681

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQ 196
           +SV LT  G V++WG+        G  +  + P+ ++  +  +++ V    G    LA+ 
Sbjct: 682 YSVALTSNGEVYSWGKGNFGRLGHGSSEDQTTPMLLKFFKGHRIVDVACGSGDAQTLAVT 741

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           + GA+++WG+ +YG+LG G       P  ++ L G  +V +  G   S ALT  G VY W
Sbjct: 742 DSGAVYSWGDGDYGKLGRGGNDGCKTPKVIEKLMGQDVVRVYCGNQFSMALTKSGAVYTW 801

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G+G++ RLG G  D +    P+++  L+ + +  ++ G  H +A+T DG ++ +GR + G
Sbjct: 802 GKGDNYRLGHGTEDHARH--PKQIEALSSKKVKDIAIGSLHCMAITEDGELYGWGRNEQG 859

Query: 317 RLG 319
           +LG
Sbjct: 860 QLG 862



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF----H 191
           V+Q+A      ++L++ G V+          ++Q++      G    ++I + +     H
Sbjct: 577 VQQIACSERCCLILSKAGKVYMLYYTSLSPTLQQLN------GFGDREVIRIASHPDGKH 630

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            + L  DG +++WGN + G+LG GD Q   +P  + GLSG  +  I  G  +S ALT +G
Sbjct: 631 YMGLTSDGEVFSWGNGDGGKLGHGDYQNHEEPALITGLSGKQVAKICCGSSYSVALTSNG 690

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFS 309
           EVY WG+G  GRLG G ++  +   P  +    G  IV V+CG     ++A+T  G ++S
Sbjct: 691 EVYSWGKGNFGRLGHGSSEDQT--TPMLLKFFKGHRIVDVACGSGDAQTLAVTDSGAVYS 748

Query: 310 FGRGDHGRLGYG 321
           +G GD+G+LG G
Sbjct: 749 WGDGDYGKLGRG 760



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 40/280 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S   + +WG+G+ G+LG G+ +  E   ++  L   +V  +  GS  S+A+  +G+  
Sbjct: 634 LTSDGEVFSWGNGDGGKLGHGDYQNHEEPALITGLSGKQVAKICCGSSYSVALTSNGEVY 693

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
                         ++ +  P  +      +IV  A G      LAV D G  Y+WG  +
Sbjct: 694 SWGKGNFGRLGHGSSEDQTTPMLLKFFKGHRIVDVACGSGDAQTLAVTDSGAVYSWGDGD 753

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           YG+ G        T +++       ++   + +VR V  G   S+ LT+ G V+TWG+  
Sbjct: 754 YGKLGRGGNDGCKTPKVI-------EKLMGQDVVR-VYCGNQFSMALTKSGAVYTWGK-- 803

Query: 163 PPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  ++          P +++ L  ++VK IA+G+ H +A+ EDG L+ WG NE GQL
Sbjct: 804 --GDNYRLGHGTEDHARHPKQIEALSSKKVKDIAIGSLHCMAITEDGELYGWGRNEQGQL 861

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           G       ++P  + G+ G  ++ +A G   + A T  G+
Sbjct: 862 GNPSISNFTEPTLIGGMEGKNIIGVACGPTQTFAWTSGGQ 901



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G  +    P+ +  LS  ++ +   G  + +A+   G  Y+WG   +G+ G        T
Sbjct: 654 GDYQNHEEPALITGLSGKQVAKICCGSSYSVALTSNGEVYSWGKGNFGRLGHGSSEDQTT 713

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
             +L+           +++     +G   ++ +T  G V++WG     GD  ++      
Sbjct: 714 PMLLKF------FKGHRIVDVACGSGDAQTLAVTDSGAVYSWGD----GDYGKLGRGGND 763

Query: 171 --SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
               P  ++ L  + V  +  G   ++AL + GA++ WG  +  +LG G       P  +
Sbjct: 764 GCKTPKVIEKLMGQDVVRVYCGNQFSMALTKSGAVYTWGKGDNYRLGHGTEDHARHPKQI 823

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + LS   + DIA G  H  A+T+DGE+YGWGR E G+L  G+   S+   P  +  + G+
Sbjct: 824 EALSSKKVKDIAIGSLHCMAITEDGELYGWGRNEQGQL--GNPSISNFTEPTLIGGMEGK 881

Query: 287 DIVQVSCGGTHSVALTRDGH 306
           +I+ V+CG T + A T  G 
Sbjct: 882 NIIGVACGPTQTFAWTSGGQ 901



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPI---------PVQGLSG-LTLVDIAA--------- 239
            G +W WG+N  GQLG  D     QP+         P+Q + G  TL  + A         
Sbjct: 4461 GQIWGWGHNHRGQLGGVDGAKVKQPVSCEALAVTRPIQLVGGEQTLFAVTAEGKVFATGY 4520

Query: 240  -----------------------------------GGWHSTALTDDGEVYGWGRGEHGRL 264
                                               GG H  AL+ +GEVY WG GE G+L
Sbjct: 4521 GAGGRLGVGGTESVSHPTQLESIQHVFIKKLAVNSGGKHCLALSAEGEVYSWGEGEDGKL 4580

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ ++ L G+++V ++ GG HS  +T +G ++++G+G +GRLG+G
Sbjct: 4581 GHGNRSPCDR--PRVIDSLRGKEVVDIAAGGAHSACITANGELYTWGKGRYGRLGHG 4635



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 113/301 (37%), Gaps = 82/301 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S   +  WG GE G+LG G+N  +     VKAL   +V  V  GSR+  +LA+ D+GK
Sbjct: 3619 ITSNGDLYTWGLGEYGRLGHGDNTTQLKPKQVKALAHERVVQVACGSRDAQTLALTDEGK 3678

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 N+P +V+ L + K+ Q   G    LA+   G+ + WG  +
Sbjct: 3679 VYSWGDGDFGKLGRGGSEGCNVPHEVDRLRDQKVCQIECGAQFSLALTKSGQVWTWGKGD 3738

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G        T   +R+  ++      K++   VA G  H + +T  G V+ W    
Sbjct: 3739 YFRLGH------GTDAHVRKPQIVEGLKGKKIV--HVAVGALHCLAVTDSGQVFAW---- 3786

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                      G+N++GQ G G T    +
Sbjct: 3787 ------------------------------------------GDNDHGQQGNGTTTVNRK 3804

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTA---------LTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            P  V  L G  +  +A G  HS A          T +  ++   R   G    G ND +S
Sbjct: 3805 PALVV-LEGYKISKVACGSSHSIAWATTDMSVPTTHEPVLFSTSRDALGATLLGVNDNNS 3863

Query: 274  K 274
            +
Sbjct: 3864 E 3864


>gi|157821067|ref|NP_001100990.1| E3 ubiquitin-protein ligase HERC2 [Rattus norvegicus]
 gi|149031474|gb|EDL86454.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 2 (predicted) [Rattus
            norvegicus]
          Length = 4779

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3898 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3957

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3958 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4017

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4018 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4069

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4070 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4129

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4130 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4187

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4188 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4243

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4244 Q--GKKVNR------VACGSAHTLA---WSTSK 4265



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2925 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 2982

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 2983 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 3039

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3040 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3099

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3100 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3157

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3158 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3205

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3206 VAVGALHCLAVTD 3218



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 399 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 458

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 459 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 503

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 504 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 563

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 564 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 623

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 624 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 681

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 682 NDQCQHFDTLRVTKPEPTALP-----------GLDTKHIVG-IACGPAQSFA 721



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 388 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 427

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 428 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 487

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 488 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 547

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 548 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 605

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 606 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 654

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 655 KKVID-VAAGSTHCLALTE 672



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2957 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3012

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3013 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3072

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3073 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3117

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3118 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3173

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3174 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3233

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3234 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3269



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3999 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4026

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4027 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4082

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4083 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4129

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4130 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4189

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4190 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4247

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4248 VNRVACGSAHTLA 4260



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 456 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 515

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 516 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 575

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 576 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 627

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 628 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 687

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 688 FDTLRVTKPEPTALPGLDTKHIVGIACGPAQSFA 721



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3897 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3956

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3957 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4016

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4017 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4071



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3058 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3117

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3118 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3177

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3178 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3229

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3230 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3267


>gi|4079811|gb|AAD08658.1| Herc2 [Mus musculus]
          Length = 4836

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3955 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4014

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4015 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4074

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4075 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4126

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4127 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4186

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4244

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4245 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4300

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4301 Q--GKKVNR------VACGSAHTLA---WSTSK 4322



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 3039

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  +Q 
Sbjct: 3040 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIQA 3096

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+  L   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3097 LKTKRIRDIAYGSSHSAPLTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3156

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3157 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3214

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3215 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3262

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3263 VAVGALHCLAVTD 3275



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 163/352 (46%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH + LT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLVLTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +      VT  +P   P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLGVTKPEPTAFP-----------GLDSKHIVG-IACGPAQSFA 776



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 38/273 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 443 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G
Sbjct: 661 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHG 693



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 155/338 (45%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H   +   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIQALKTKRIRDIAYGSSHSAPLTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4056 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4083

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4084 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4139

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4140 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4186

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4246

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4247 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4304

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4305 VNRVACGSAHTLA 4317



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 123/278 (44%), Gaps = 44/278 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNE---- 208
           G    Q    G  + +  P  ++GL+  K+I  A G+ H L L ED  + +WG+N+    
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLVLTEDSEVHSWGSNDQCQH 742

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           +  LG    +P + P    GL    +V IA G   S A
Sbjct: 743 FDTLGVTKPEPTAFP----GLDSKHIVGIACGPAQSFA 776



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3954 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4013

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4014 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4073

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4074 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4128



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|302760205|ref|XP_002963525.1| hypothetical protein SELMODRAFT_438355 [Selaginella moellendorffii]
 gi|300168793|gb|EFJ35396.1| hypothetical protein SELMODRAFT_438355 [Selaginella moellendorffii]
          Length = 430

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 180/357 (50%), Gaps = 42/357 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
           + S   + ++G GEDGQLG G+ E+R    ++ AL   ++  V  G+ ++ A        
Sbjct: 20  LLSGQVVCSFGRGEDGQLGHGDAEDRHLPRIIGALNDCEISLVACGADHTTAYSATRLTI 79

Query: 55  ------DDGKTKTEN-----IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                 D G+    N     +P  + AL   +I Q A G  HCLAV   G  Y+WG N+ 
Sbjct: 80  YSWGWGDFGRLGHGNSSDLFVPHPIKALQGLEIRQIACGDSHCLAVTADGEVYSWGRNQN 139

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G       DT      D ++P +      + V+ +AAG  H+  +T  G ++ WG  
Sbjct: 140 GQLG-----LGDT-----DDSLVPHKLLAFEGVSVKMLAAGAEHTAAVTDGGKLYGWG-- 187

Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     +P  V   G E++ ++A G  H +A+ + G L+ +G ++YGQLG
Sbjct: 188 WGRYGNLGLGDRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGKLYTYGWSKYGQLG 247

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            GD      P  V  L+   +  ++ G  H+ ALT+ G++YGWG  + G++G GD D  +
Sbjct: 248 HGDYADHLLPHQVAALAEFNITQVSGGWRHTVALTEAGKLYGWGWNKFGQVGSGDVDDHT 307

Query: 274 KMVPQKVNLLA-GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
              PQ +++    + +VQVSCG  H+VA+T   +++S+GRG  G+LG+G  V    P
Sbjct: 308 S--PQLISIPGQHQRVVQVSCGWRHTVAVTDKNNVYSWGRGTSGQLGHGDAVDRSAP 362



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 37/304 (12%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           K++  + G  H +A+       ++G  E GQ G      D   R L R I     C   L
Sbjct: 6   KVLLVSAGASHTVALLSGQVVCSFGRGEDGQLGH----GDAEDRHLPRIIGALNDCEISL 61

Query: 135 IVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIAV 187
               VA G  H+   +      + W WG       G+   + VP  ++ L+  +++ IA 
Sbjct: 62  ----VACGADHTTAYSATRLTIYSWGWGDFGRLGHGNSSDLFVPHPIKALQGLEIRQIAC 117

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+  DG +++WG N+ GQLG GDT     P  +    G+++  +AAG  H+ A+
Sbjct: 118 GDSHCLAVTADGEVYSWGRNQNGQLGLGDTDDSLVPHKLLAFEGVSVKMLAAGAEHTAAV 177

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           TD G++YGWG G +G LG G  D+  +M+P +V  +  E +  V+CG  H++A+++ G +
Sbjct: 178 TDGGKLYGWGWGRYGNLGLG--DRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGKL 235

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVP----INIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +++G   +G+LG+G       P +V      NI                  V+ G RHT+
Sbjct: 236 YTYGWSKYGQLGHGDYADHLLPHQVAALAEFNITQ----------------VSGGWRHTV 279

Query: 364 AIVE 367
           A+ E
Sbjct: 280 ALTE 283



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 15/193 (7%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           + G  +V L++ GA H +AL     + ++G  E GQLG GD + R  P  +  L+   + 
Sbjct: 1   MAGERKVLLVSAGASHTVALLSGQVVCSFGRGEDGQLGHGDAEDRHLPRIIGALNDCEIS 60

Query: 236 DIAAGGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G  H+TA +     +Y WG G+ GRLG G++  S   VP  +  L G +I Q++CG
Sbjct: 61  LVACGADHTTAYSATRLTIYSWGWGDFGRLGHGNS--SDLFVPHPIKALQGLEIRQIACG 118

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            +H +A+T DG ++S+GR  +G+LG G    +         +P    A +GV      K+
Sbjct: 119 DSHCLAVTADGEVYSWGRNQNGQLGLGDTDDS--------LVPHKLLAFEGVS----VKM 166

Query: 355 VACGGRHTLAIVE 367
           +A G  HT A+ +
Sbjct: 167 LAAGAEHTAAVTD 179


>gi|395855546|ref|XP_003800216.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Otolemur garnettii]
          Length = 5093

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 4212 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4271

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4272 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4331

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4332 HGNRSPCDRPRVIESLRGIE--------VADVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4383

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4384 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4443

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4444 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4501

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4502 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4557

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4558 Q--GKKVNR------VACGSAHTLA---WSTSK 4579



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 3242 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-LSSG 3292

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3293 TVPIPRQVTALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3352

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3353 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3412

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3413 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3470

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3471 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3519

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3520 IVH-VAVGALHCLAVTD 3535



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40   VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
            V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 714  VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 773

Query: 92   QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
             G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 774  TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISTFSGKQAGKHVVHIA 818

Query: 141  AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
             G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 819  CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 878

Query: 193  LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
            LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 879  LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 938

Query: 253  VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
            VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 939  VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 996

Query: 313  GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 997  NDQCQHFDTLRVTKPEPTALP-----------GLDTKHIVG-IACGPAQSFA 1036



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 156/334 (46%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     +   V AL  Y V+ V   +G R++ A+  DGK  +  
Sbjct: 3274 VYACGEATNGRLGLGLSSGTVPIPRQVTALSSYVVKKVAVHSGGRHATALTVDGKVFSWG 3333

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 3334 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLG 3393

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 3394 H----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 3438

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 3439 GD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3494

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 3495 YFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGT 3554

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V+ L G+ I +V+CG +HSVA T
Sbjct: 3555 TTVNRK--PTLVHGLEGQKITRVACGSSHSVAWT 3586



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  + Q A      L +   GR Y    N                     D 
Sbjct: 703 PIQCEGLASLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 742

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 743 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 802

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 803 STFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 862

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 863 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 920

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 921 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 969

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 970 KKVID-VAAGSTHCLALTE 987



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 135/314 (42%), Gaps = 62/314 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +A+T  + +WG G+ G+LG G+            LE  KV S  +G +            
Sbjct: 771  LAATGEVYSWGCGDGGRLGHGDT---------VPLEEPKVISTFSGKQ------------ 809

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                       +   +V  A G  +  A+  +G  Y WG   YG+ G             
Sbjct: 810  -----------AGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSE-------- 850

Query: 121  RRDIVIPQRCA----PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
              D  IP   A     K+I     +G   ++ +T  G VW+WG     GD  ++      
Sbjct: 851  --DEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGD----GDYGKLGRGGSD 904

Query: 171  --SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
                P  ++ L+ + ++ V  G+  ++AL +DG +++WG  +  +LG G  +    P  +
Sbjct: 905  GCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL 964

Query: 227  QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            +GL G  ++D+AAG  H  ALT+D EV+ WG  +  +    D  + +K  P  +  L  +
Sbjct: 965  EGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQ--HFDTLRVTKPEPTALPGLDTK 1022

Query: 287  DIVQVSCGGTHSVA 300
             IV ++CG   S A
Sbjct: 1023 HIVGIACGPAQSFA 1036



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  V AG  +S  +   G   
Sbjct: 4313 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVADVAAGGAHSACVTAAGDLY 4372

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   ++V  A G      L + D    ++WG  +
Sbjct: 4373 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 4432

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 4433 YGKLGR--GGSDGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 4484

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 4485 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 4544

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            T    +P  V  L G  +  +A G  H+ A
Sbjct: 4545 TNAIQRPRLVAALQGKKVNRVACGSAHTLA 4574



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 4211 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4270

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4271 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4330

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++  V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4331 GHGNRSPCDR--PRVIESLRGIEVADVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4385



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 101/266 (37%), Gaps = 72/266 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3375 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3434

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3435 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3494

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3495 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWG--- 3543

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                       +N++GQ G G T    +
Sbjct: 3544 -------------------------------------------DNDHGQQGNGTTTVNRK 3560

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALT 248
            P  V GL G  +  +A G  HS A T
Sbjct: 3561 PTLVHGLEGQKITRVACGSSHSVAWT 3586


>gi|188038845|gb|ACD47036.1| ASL1/Herc2 fusion protein [Mus musculus]
          Length = 4746

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3865 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3924

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3925 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3984

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3985 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4036

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4037 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4096

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4097 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4154

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4155 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4210

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4211 Q--GKKVNR------VACGSAHTLA---WSTSK 4232



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ Y+ G    G+ G        T  I R+
Sbjct: 2892 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYSCGEATNGRLGLG--MSSGTVPIPRQ 2949

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  +Q 
Sbjct: 2950 ITALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIQA 3006

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+  L   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 3007 LKTKRIRDIAYGSSHSAPLTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 3066

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q+ CG
Sbjct: 3067 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQIECG 3124

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 3125 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 3172

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 3173 VAVGALHCLAVTD 3185



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 163/352 (46%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 364 VMQVACAEKRFLILSRNGRVYTQAYNSDMLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 423

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 424 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 468

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 469 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 528

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 529 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 588

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH + LT D  + S+G 
Sbjct: 589 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLVLTEDSEVHSWGS 646

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +      VT  +P   P           G+D + I   +ACG   + A
Sbjct: 647 NDQCQHFDTLGVTKPEPTAFP-----------GLDSKHIVG-IACGPAQSFA 686



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 38/273 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  ++Q A      L +   GR Y    N                     D+
Sbjct: 353 PIQCEGLASLGVMQVACAEKRFLILSRNGRVYTQAYNS--------------------DM 392

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 393 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 452

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 453 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 512

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 513 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 570

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G
Sbjct: 571 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHG 603



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 155/338 (45%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + + G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2924 VYSCGEATNGRLGLGMSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 2979

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H   +   G  Y WG  EY
Sbjct: 2980 FSWGEGDDGKLGHFSRMNCDKPRLIQALKTKRIRDIAYGSSHSAPLTSSGELYTWGLGEY 3039

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3040 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3084

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3085 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3140

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3141 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3200

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3201 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3236



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3966 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3993

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3994 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4049

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4050 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4096

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4097 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4156

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4157 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4214

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4215 VNRVACGSAHTLA 4227



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 123/278 (44%), Gaps = 44/278 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 421 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 480

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 481 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 540

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 541 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 592

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNE---- 208
           G    Q    G  + +  P  ++GL+  K+I  A G+ H L L ED  + +WG+N+    
Sbjct: 593 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLVLTEDSEVHSWGSNDQCQH 652

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           +  LG    +P + P    GL    +V IA G   S A
Sbjct: 653 FDTLGVTKPEPTAFP----GLDSKHIVGIACGPAQSFA 686



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3864 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3923

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3924 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3983

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3984 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4038



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3025 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3084

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3085 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3144

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3145 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3196

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3197 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3234


>gi|328793081|ref|XP_395007.4| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Apis mellifera]
          Length = 4643

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 189/402 (47%), Gaps = 62/402 (15%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +   + ++L   +   +  G +   A+  DGK       
Sbjct: 3785 AIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVYATGYG 3844

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  + + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 3845 AVGRLGIGGTDSVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 3904

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                     G  L  D        PKLI       +  +A GG HS  +T  G ++TWG+
Sbjct: 3905 H--------GNRLSYD-------RPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGK 3949

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  ++ L+  K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 3950 GRYGRLGHGDSEDQLTPKLIEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKL 4009

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P+ ++ L+GL ++ +  G   S ALT  G +Y WG+G++ RLG G +D  
Sbjct: 4010 GRGGSDGCKIPMKIESLAGLGVIKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHV 4069

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA T  G +F++G  D G+LG G    T   ++ 
Sbjct: 4070 RR--PRKVAALQGKKIISIATGSLHCVACTDKGEVFTWGDNDEGQLGDG----TTSALQR 4123

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
            P  + A +  G  + R      VACG  HTLA    +  +SK
Sbjct: 4124 PRLVHALQ--GKKITR------VACGSAHTLAWSTMKATQSK 4157



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 160/314 (50%), Gaps = 32/314 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K V  A G      V  +G+ YA G    G+ G      DD+     + 
Sbjct: 2813 LPVYSEVLSKLKPVHIAGGSKTLFVVSQEGKLYACGEGTNGRLG----LGDDSNVCEPK- 2867

Query: 124  IVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
               P     + ++++VA  +GG H++ LT++G V++WG+        G+   +  P  ++
Sbjct: 2868 ---PIPFLSQYVIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNSISLDKPRLIE 2924

Query: 178  GLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
             L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GDT  +S+P  VQ L G  ++
Sbjct: 2925 SLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRLGHGDTATQSKPKLVQSLVGQRVI 2984

Query: 236  DIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
             IA G     + ALT DG VY WG G+ G+LG G +D      P  ++ L G  +VQ+ C
Sbjct: 2985 QIACGSRDAQTMALTADGLVYSWGDGDFGKLGRGGSDGC--YTPLLIDRLNGLGVVQIEC 3042

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+  + I  
Sbjct: 3043 GAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGLRGKKIIH 3091

Query: 354  LVACGGRHTLAIVE 367
             VA G  H LA+ +
Sbjct: 3092 -VAVGALHCLAVTD 3104



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 142/286 (49%), Gaps = 36/286 (12%)

Query: 95   AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLTRE 152
             Y WG N+          KD  G +    I +P       KL    +A G     V+++E
Sbjct: 2792 VYVWGLND----------KDQLGGLKGSKIKLPVYSEVLSKLKPVHIAGGSKTLFVVSQE 2841

Query: 153  GHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAW 204
            G ++  G+        GD   +  P  +  L Q  +K +AV  G  H LAL +DG +++W
Sbjct: 2842 GKLYACGEGTNGRLGLGDDSNVCEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGKVFSW 2901

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  E G+LG G++    +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+GRL
Sbjct: 2902 GEGEDGKLGHGNSISLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGRL 2961

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGR 322
            G GD    SK  P+ V  L G+ ++Q++CG     ++ALT DG ++S+G GD G+LG G 
Sbjct: 2962 GHGDTATQSK--PKLVQSLVGQRVIQIACGSRDAQTMALTADGLVYSWGDGDFGKLGRGG 3019

Query: 323  KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
                  P+ +       R  G GV +      + CG + +LA+ ++
Sbjct: 3020 SDGCYTPLLI------DRLNGLGVVQ------IECGAQFSLALTKY 3053



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 158/328 (48%), Gaps = 52/328 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKA---LEPYKVRSVV--AGSRNSLAICDDGK--- 58
            + A G G +G+LG+G++     VC  K    L  Y ++ V   +G +++LA+  DGK   
Sbjct: 2844 LYACGEGTNGRLGLGDDSN---VCEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGKVFS 2900

Query: 59   -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         + + + P  + +L + +I   A G  H  A+   G  Y WG  EYG+
Sbjct: 2901 WGEGEDGKLGHGNSISLDKPRLIESLKSKRIRDIACGSGHSAAITSSGELYTWGLGEYGR 2960

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWP 163
             G          ++++   ++ QR      V Q+A G     ++ LT +G V++WG    
Sbjct: 2961 LGHGDTATQSKPKLVQS--LVGQR------VIQIACGSRDAQTMALTADGLVYSWGD--- 3009

Query: 164  PGDIKQI--------SVPV---RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  ++          P+   R+ GL  V+ I  GA  +LAL + G +W WG  +Y +L
Sbjct: 3010 -GDFGKLGRGGSDGCYTPLLIDRLNGLGVVQ-IECGAQFSLALTKYGEVWTWGKGDYFRL 3067

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G+     +P  V+GL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G    +
Sbjct: 3068 GHGNDHHVRKPTLVEGLRGKKIIHVAVGALHCLAVTDIGQVYAWGDNDHGQQGNGTTIVN 3127

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             K  P  V+ L    + +VSCG +HS+A
Sbjct: 3128 KK--PSLVHELDDARVNRVSCGSSHSIA 3153



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 137/310 (44%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 3886 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------L 3909

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            + + P  +  L  T+IV  A GG H  A+   G  Y WG   YG+ G        T ++ 
Sbjct: 3910 SYDRPKLIEELLGTEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSEDQLTPKL- 3968

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
                 I      K+I     +G   ++ +T + +VW+WG     GD  ++         +
Sbjct: 3969 -----IEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKI 4019

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P++++ L  + +I V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 4020 PMKIESLAGLGVIKVECGSQFSVALTRSGAIYTWGKGDYHRLGHGTDDHVRRPRKVAALQ 4079

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A TD GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I +
Sbjct: 4080 GKKIISIATGSLHCVACTDKGEVFTWGDNDEGQL--GDGTTSALQRPRLVHALQGKKITR 4137

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 4138 VACGSAHTLA 4147



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 8/154 (5%)

Query: 175 RVQGLEQVKLIAVGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           RV G  +  +  + +     H LAL +D ++++WGN E G+LG G+     +P  ++ L 
Sbjct: 493 RVYGFSEKPITMIASHSDGTHYLALTQDNSVYSWGNGECGRLGHGNMTWYDEPKLIEALV 552

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +  IA G  +S AL+ +GE+Y WGRG +G+LG G++DK   M+P  V  L G  +V 
Sbjct: 553 EKNITFIACGSTYSAALSSNGELYTWGRGNYGKLGHGNSDKDV-MIPTLVTALNGHMVVY 611

Query: 291 VSCGG---THSVALTRDGHIFSFGRGDHGRLGYG 321
           V+CGG     ++ +T  G +FS+G G+HG+LG G
Sbjct: 612 VACGGGRDPQTLCVTASGIVFSWGDGNHGKLGRG 645



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 118/272 (43%), Gaps = 42/272 (15%)

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------- 135
           G H LA+      Y+WG  E G+ G         G +   D        PKLI       
Sbjct: 511 GTHYLALTQDNSVYSWGNGECGRLGH--------GNMTWYD-------EPKLIEALVEKN 555

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI---------KQISVPVRVQGL--EQVKL 184
           +  +A G T+S  L+  G ++TWG+    G+          K + +P  V  L    V  
Sbjct: 556 ITFIACGSTYSAALSSNGELYTWGR----GNYGKLGHGNSDKDVMIPTLVTALNGHMVVY 611

Query: 185 IAVGA---FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           +A G       L +   G +++WG+  +G+LG G       P  V  L  + +  +  G 
Sbjct: 612 VACGGGRDPQTLCVTASGIVFSWGDGNHGKLGRGGCDGSKTPKIVDKLLDINVAKVYCGQ 671

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             S ALT  GEVY WG+GE  +LG G+ D      P+ +++L  + I  +  G  H +AL
Sbjct: 672 QFSAALTAYGEVYTWGKGEDYKLGHGNEDHVR--YPKIIDILKTKKIKDLYIGHLHVLAL 729

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           T D  ++ +GR DHG++         +P   P
Sbjct: 730 TEDQLVYGWGRNDHGQIDPALGTIVPEPTLCP 761



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 12/204 (5%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           + GTH + LT++  V++WG         G++     P  ++ L  + +  IA G+ ++ A
Sbjct: 509 SDGTHYLALTQDNSVYSWGNGECGRLGHGNMTWYDEPKLIEALVEKNITFIACGSTYSAA 568

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGW---HSTALTDD 250
           L  +G L+ WG   YG+LG G++      P  V  L+G  +V +A GG     +  +T  
Sbjct: 569 LSSNGELYTWGRGNYGKLGHGNSDKDVMIPTLVTALNGHMVVYVACGGGRDPQTLCVTAS 628

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G V+ WG G HG+LG G  D S    P+ V+ L   ++ +V CG   S ALT  G ++++
Sbjct: 629 GIVFSWGDGNHGKLGRGGCDGSK--TPKIVDKLLDINVAKVYCGQQFSAALTAYGEVYTW 686

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPI 334
           G+G+  +LG+G +     P  + I
Sbjct: 687 GKGEDYKLGHGNEDHVRYPKIIDI 710



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P+  + LS L  V +  G     A+T DG+VY  G 
Sbjct: 3784 GAIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVYATGY 3843

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S MVP  +  +    +  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 3844 GAVGRLGIGGTD--SVMVPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 3901

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G +++  +P  +   +       + VD       +ACGG H+ AI
Sbjct: 3902 KLGHGNRLSYDRPKLIEELL-----GTEIVD-------IACGGHHSAAI 3938



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +  A++ WG N+  QLG         P+  + LS L  V IA G      ++ +G++Y  
Sbjct: 2788 QHSAVYVWGLNDKDQLGGLKGSKIKLPVYSEVLSKLKPVHIAGGSKTLFVVSQEGKLYAC 2847

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGD 314
            G G +GRLG GD+  S+   P+ +  L+   I  V V  GG H++ALT+DG +FS+G G+
Sbjct: 2848 GEGTNGRLGLGDD--SNVCEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGKVFSWGEGE 2905

Query: 315  HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG+G  ++  +P  +           + +  + I + +ACG  H+ AI
Sbjct: 2906 DGKLGHGNSISLDKPRLI-----------ESLKSKRI-RDIACGSGHSAAI 2944



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 112/257 (43%), Gaps = 50/257 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+   +    +V++L   +V  +  GSR       D +T 
Sbjct: 2944 ITSSGELYTWGLGEYGRLGHGDTATQSKPKLVQSLVGQRVIQIACGSR-------DAQT- 2995

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      +A+   G  Y+WG  ++G+ G        T  ++
Sbjct: 2996 --------------------------MALTADGLVYSWGDGDFGKLGRGGSDGCYTPLLI 3029

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V Q+  G   S+ LT+ G VWTWG+        G+   +  P  V
Sbjct: 3030 DR--------LNGLGVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV 3081

Query: 177  QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL   K+I  AVGA H LA+ + G ++AWG+N++GQ G G T    +P  V  L    +
Sbjct: 3082 EGLRGKKIIHVAVGALHCLAVTDIGQVYAWGDNDHGQQGNGTTIVNKKPSLVHELDDARV 3141

Query: 235  VDIAAGGWHSTA--LTD 249
              ++ G  HS A  LTD
Sbjct: 3142 NRVSCGSSHSIAWVLTD 3158



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 34/272 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           +    S+ +WG+GE G+LG GN    +   +++AL    +  +  GS  S A+  +G+  
Sbjct: 517 LTQDNSVYSWGNGECGRLGHGNMTWYDEPKLIEALVEKNITFIACGSTYSAALSSNGELY 576

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGW---HCLAVDDQGRAYAWGG 100
                           K   IP+ V AL+   +V  A GG      L V   G  ++WG 
Sbjct: 577 TWGRGNYGKLGHGNSDKDVMIPTLVTALNGHMVVYVACGGGRDPQTLCVTASGIVFSWGD 636

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
             +G+ G        T +I+ + + I         V +V  G   S  LT  G V+TWG+
Sbjct: 637 GNHGKLGRGGCDGSKTPKIVDKLLDIN--------VAKVYCGQQFSAALTAYGEVYTWGK 688

Query: 161 ----PWPPGDIKQISVP--VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                   G+   +  P  + +   +++K + +G  H LAL ED  ++ WG N++GQ+  
Sbjct: 689 GEDYKLGHGNEDHVRYPKIIDILKTKKIKDLYIGHLHVLALTEDQLVYGWGRNDHGQIDP 748

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  +P      SG  ++ +A G   S A
Sbjct: 749 ALGTIVPEPTLCPTFSGKNVIGLACGPTQSFA 780



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+    +S L +  +         L+ +G VY    G   +  +G ++K   M+    + 
Sbjct: 452 PVYYDTISELGIKQLCCTERAVIILSVNGNVYMMYYGSETQRVYGFSEKPITMIASHSD- 510

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
                       GTH +ALT+D  ++S+G G+ GRLG+G      +P
Sbjct: 511 ------------GTHYLALTQDNSVYSWGNGECGRLGHGNMTWYDEP 545


>gi|302799595|ref|XP_002981556.1| hypothetical protein SELMODRAFT_179009 [Selaginella moellendorffii]
 gi|300150722|gb|EFJ17371.1| hypothetical protein SELMODRAFT_179009 [Selaginella moellendorffii]
          Length = 430

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 190/376 (50%), Gaps = 43/376 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
           + S   + ++G GEDGQLG G+ E+R    ++ AL   ++  V  G+ ++ A        
Sbjct: 20  LLSGQVVCSFGRGEDGQLGHGDAEDRLLPRIIGALNDCEISLVACGADHTTAYSATRLTI 79

Query: 55  ------DDGKTKTEN-----IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                 D G+    N     +P  + AL   +I Q A G  HCLAV   G  Y+WG N+ 
Sbjct: 80  YSWGWGDFGRLGHGNSSDLFVPHPIKALQGLEIRQIACGDSHCLAVTADGEVYSWGRNQN 139

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G       DT      D ++P +      + V+ +AAG  H+  +T  G ++ WG  
Sbjct: 140 GQLG-----LGDT-----DDSLVPHKLLAFEGVSVKMLAAGAEHTAAVTDSGKLYGWG-- 187

Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     +P  V   G E++ ++A G  H +A+ + G L+ +G ++YGQLG
Sbjct: 188 WGRYGNLGLGDRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGKLYTYGWSKYGQLG 247

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            GD      P  V  L+   +  ++ G  H+ ALT+ G++YGWG  + G++G GD D  +
Sbjct: 248 HGDYADHLLPHQVAALAEFNITQVSGGWRHTVALTEAGKLYGWGWNKFGQVGSGDVDDHT 307

Query: 274 KMVPQKVNLLA-GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              PQ +++    + +VQVSCG  H+VA+T   +++S+GRG  G+LG+G  V    P  +
Sbjct: 308 S--PQLISIPGQHQRVVQVSCGWRHTVAVTDKNNVYSWGRGTSGQLGHGDAVDRSAPKGI 365

Query: 333 PINIPAPRNAGDGVDR 348
              + A  +A +G+++
Sbjct: 366 QA-LSADGSACEGLEK 380



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 37/304 (12%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           K++  + G  H +A+       ++G  E GQ G      D   R+L R I     C   L
Sbjct: 6   KVLLVSAGASHTVALLSGQVVCSFGRGEDGQLGH----GDAEDRLLPRIIGALNDCEISL 61

Query: 135 IVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIAV 187
               VA G  H+   +      + W WG       G+   + VP  ++ L+  +++ IA 
Sbjct: 62  ----VACGADHTTAYSATRLTIYSWGWGDFGRLGHGNSSDLFVPHPIKALQGLEIRQIAC 117

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+  DG +++WG N+ GQLG GDT     P  +    G+++  +AAG  H+ A+
Sbjct: 118 GDSHCLAVTADGEVYSWGRNQNGQLGLGDTDDSLVPHKLLAFEGVSVKMLAAGAEHTAAV 177

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           TD G++YGWG G +G LG G  D+  +M+P +V  +  E +  V+CG  H++A+++ G +
Sbjct: 178 TDSGKLYGWGWGRYGNLGLG--DRGDRMLPAEVPAVGDEKMCMVACGWRHTIAVSQSGKL 235

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVP----INIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +++G   +G+LG+G       P +V      NI                  V+ G RHT+
Sbjct: 236 YTYGWSKYGQLGHGDYADHLLPHQVAALAEFNITQ----------------VSGGWRHTV 279

Query: 364 AIVE 367
           A+ E
Sbjct: 280 ALTE 283



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 15/193 (7%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           + G  +V L++ GA H +AL     + ++G  E GQLG GD + R  P  +  L+   + 
Sbjct: 1   MAGERKVLLVSAGASHTVALLSGQVVCSFGRGEDGQLGHGDAEDRLLPRIIGALNDCEIS 60

Query: 236 DIAAGGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G  H+TA +     +Y WG G+ GRLG G++  S   VP  +  L G +I Q++CG
Sbjct: 61  LVACGADHTTAYSATRLTIYSWGWGDFGRLGHGNS--SDLFVPHPIKALQGLEIRQIACG 118

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            +H +A+T DG ++S+GR  +G+LG G    +         +P    A +GV      K+
Sbjct: 119 DSHCLAVTADGEVYSWGRNQNGQLGLGDTDDS--------LVPHKLLAFEGVS----VKM 166

Query: 355 VACGGRHTLAIVE 367
           +A G  HT A+ +
Sbjct: 167 LAAGAEHTAAVTD 179


>gi|397520491|ref|XP_003830350.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Pan paniscus]
 gi|410221280|gb|JAA07859.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410259924|gb|JAA17928.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1049

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N ++     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|397520493|ref|XP_003830351.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Pan paniscus]
 gi|410221282|gb|JAA07860.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410259926|gb|JAA17929.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1057

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N ++     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|114630750|ref|XP_001167753.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 8
           [Pan troglodytes]
 gi|410295452|gb|JAA26326.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410333085|gb|JAA35489.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1057

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N ++     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|297296008|ref|XP_001109429.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Macaca
            mulatta]
          Length = 4840

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3984 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4043

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4044 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4103

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4104 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4155

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4156 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4215

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4216 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4273

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4274 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4329

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4330 Q--GKKVNR------VACGSAHTLA---WSTSK 4351



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4085 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4112

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4113 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4168

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4169 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4215

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4216 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4275

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4276 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4333

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4334 VNRVACGSAHTLA 4346



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3983 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4042

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4043 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4102

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4103 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4157



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|262368177|pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
          Length = 389

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 21  TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 81  AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                  D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 141 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 252

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 253 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 310

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 366

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
           +  G  V+R      VACG  HTLA   W T +
Sbjct: 367 Q--GKKVNR------VACGSAHTLA---WSTSK 388



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG  EDG+LG GN    +   V+++L   +V  V AG  +S  +   G   
Sbjct: 122 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLY 181

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T                +  P  V AL   ++V  A G      L + D    ++WG  +
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 242 YGKLGRGGS--DGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 293

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 294 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 353

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           T    +P  V  L G  +  +A G  H+ A
Sbjct: 354 TNAIQRPRLVAALQGKKVNRVACGSAHTLA 383



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 56/183 (30%)

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL------------------- 232
           NL  Q  G ++ WG+N  GQLG  +      P P + L+ L                   
Sbjct: 13  NLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADG 72

Query: 233 ------------------------TLVD-----------IAAGGWHSTALTDDGEVYGWG 257
                                   TL++           + +GG H  AL+ +GEVY WG
Sbjct: 73  KLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
             E G+LG G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GR
Sbjct: 133 EAEDGKLGHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGR 190

Query: 318 LGY 320
           LG+
Sbjct: 191 LGH 193


>gi|194864811|ref|XP_001971119.1| GG14780 [Drosophila erecta]
 gi|190652902|gb|EDV50145.1| GG14780 [Drosophila erecta]
          Length = 1058

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 39/347 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           MAS   +  WGS   GQLG+G  E+ +   +  +  P+     V  V  G R++L +  +
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQ--ILTPSQIPWTPDTAVEQVACGHRHTLFLTAN 58

Query: 57  GKTKT----------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           GK              ++P++    +  L +  I+Q + G  H LA+ D G+  +WG N+
Sbjct: 59  GKVYACGSNDHSQLGHDLPTKRPLLIPELQDYVIIQISCGSRHSLALSDWGQVLSWGDND 118

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            GQ G   +++     I++   V+ Q  +  ++  Q+A G  HS+ LT  G +++WG   
Sbjct: 119 CGQLGHATDKE-----IMQLPKVVRQLVSKTVV--QIACGNNHSLALTSCGELYSWGSNI 171

Query: 163 -------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                   P D+   + P+R+  L  + L  IA G  H+  + + GA++ WG N  GQLG
Sbjct: 172 YGQLGVNSPKDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R+ P  ++ L  L +  +A G   S  LT++G V+  G G +G+LG G +  S+
Sbjct: 232 LNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFS--SN 289

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
           +M+P+ V  L G  I QV+CG  H++AL    G +++FG G  G+LG
Sbjct: 290 EMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLG 336



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P ++       + QV+CG  H++ LT +G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVEQVACGHRHTLFLTANGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             DH +LG+        P + P+ IP  ++        ++   ++CG RH+LA+ +W
Sbjct: 66  SNDHSQLGHDL------PTKRPLLIPELQD--------YVIIQISCGSRHSLALSDW 108



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 102/250 (40%), Gaps = 37/250 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG   ++E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 111 VLSWGDNDCGQLGHATDKEIMQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSN 170

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 171 IYGQLGVNSPKDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 230

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQP 161
           G      D+T R     +    +    L VR VA G   SV LT EG V+T     +GQ 
Sbjct: 231 G----LNDETNRAYPTQL----KTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQ- 281

Query: 162 WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQ 218
              G      +P  V  L    +  +A G  H LAL    G ++A+G    GQLGT  T+
Sbjct: 282 LGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTK 341

Query: 219 PRSQPIPVQG 228
               P  V G
Sbjct: 342 SLMLPQVVIG 351



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 213 ISKSGAVFGWGRNNCGQLGLNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 272

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR YA+G    
Sbjct: 273 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSS 332

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              +++RQ+ +GG  S+V T
Sbjct: 333 GQLGTR-----STKSLMLPQVVIGPWVSPSGSALLQSKDAKVSVVIRQIFSGGDQSIVTT 387

Query: 151 REGHVWTWGQPWPPGDIK 168
                  + +  PP D +
Sbjct: 388 T-----LFMEKVPPEDFR 400


>gi|114630758|ref|XP_001167783.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 9
           [Pan troglodytes]
 gi|410295450|gb|JAA26325.1| hect domain and RLD 4 [Pan troglodytes]
 gi|410333083|gb|JAA35488.1| hect domain and RLD 4 [Pan troglodytes]
          Length = 1049

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 175/368 (47%), Gaps = 66/368 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E         LEP K    +                      
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFI---------------------- 32

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                 N ++     G  H + V D G  Y  G N+ GQ G E  RK    +++  D   
Sbjct: 33  ------NKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD--- 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQ 181
               A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L  
Sbjct: 83  ----AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD 136

Query: 182 VKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIA 238
           ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +A
Sbjct: 137 IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVA 196

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+
Sbjct: 197 AGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHT 254

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG
Sbjct: 255 AALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACG 302

Query: 359 GRHTLAIV 366
            +HT A V
Sbjct: 303 RQHTSAFV 310



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|395746465|ref|XP_002825266.2| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like [Pongo abelii]
          Length = 4581

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3700 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3759

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3760 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3819

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3820 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 3871

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3872 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3931

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3932 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3989

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3990 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4045

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4046 Q--GKKVNR------VACGSAHTLA---WSTSK 4067



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 31/320 (9%)

Query: 58   KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
            K K   +PS    LS   +VQ A G     AV  +G+ YA        CGE  +      
Sbjct: 2727 KNKKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATKWPAWGL 2778

Query: 118  RILRRDIVIPQRCAPKL---IVRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQIS- 171
             I    + IP      L   +V++VA  +G + +     +G V++WG+    G +   S 
Sbjct: 2779 GISSGTVPIPHGXITALSSYVVKKVAVHSGTSQTGFXPVDGKVFSWGE-GDDGKLGHFSR 2837

Query: 172  VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            +P  ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L
Sbjct: 2838 MPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVL 2897

Query: 230  SGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
             G  ++ +A G     + ALTD+G V+  G G+  ++G G   K    +PQ +  L G+ 
Sbjct: 2898 LGHRVIQVACGSRDAQTLALTDEGLVFSLGDGDLWKIGPGPEVKGCN-IPQNIERLNGQG 2956

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
            + Q+ CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+ 
Sbjct: 2957 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLR 3005

Query: 348  RRWIAKLVACGGRHTLAIVE 367
             + I      G  H LA+ +
Sbjct: 3006 GKKIVACSCSGALHCLAVTD 3025



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 140/296 (47%), Gaps = 56/296 (18%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + ++WG N+          KD  G +  + I +P        L V QVA G      +T 
Sbjct: 2711 KVFSWGLND----------KDQLGGLKNKKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 2760

Query: 152  EGHVWTWGQ----------------PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNL 193
            EG V+  G+                P P G I  +S  V       VK +AV  G     
Sbjct: 2761 EGKVYACGEATKWPAWGLGISSGTVPIPHGXITALSSYV-------VKKVAVHSGTSQTG 2813

Query: 194  ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
                DG +++WG  + G+LG     PR     ++ L    + DIA G  HS ALT  GE+
Sbjct: 2814 FXPVDGKVFSWGEGDDGKLGHFSRMPRL----IEALKTKRIRDIACGSSHSAALTSSGEL 2869

Query: 254  YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFG 311
            Y WG GE+GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS G
Sbjct: 2870 YTWGLGEYGRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSLG 2927

Query: 312  RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             GD  ++G G +V   +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 2928 DGDLWKIGPGPEV---KGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 2972



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3801 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3828

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3829 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 3884

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 3885 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 3931

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3932 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3991

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3992 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4049

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4050 VNRVACGSAHTLA 4062



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/266 (33%), Positives = 129/266 (48%), Gaps = 35/266 (13%)

Query: 55   DDGKT-KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
            DDGK      +P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G      
Sbjct: 2828 DDGKLGHFSRMPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLG----HG 2883

Query: 114  DDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWGQ--PW 162
            D+T ++            PK++       V QVA G     ++ LT EG V++ G    W
Sbjct: 2884 DNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSLGDGDLW 2932

Query: 163  ---PPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               P  ++K  ++P  ++ L  + V  I  GA  +LAL + G +W WG  +Y +LG G  
Sbjct: 2933 KIGPGPEVKGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSD 2992

Query: 218  QPRSQPIPVQGLSGLTLVDIA-AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
                +P  V+GL G  +V  + +G  H  A+TD G+VY WG  +HG+ G G    + K  
Sbjct: 2993 VHVRKPQVVEGLRGKKIVACSCSGALHCLAVTDSGQVYAWGDNDHGQQGNGTTTVNRK-- 3050

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALT 302
            P  V  L G+ I +V+CG +HSVA T
Sbjct: 3051 PTLVQGLEGQKITRVACGSSHSVAWT 3076



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 126/270 (46%), Gaps = 42/270 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
            + +WG G+DG+LG  +   R    +++AL+  ++R +  GS +S A+   G+        
Sbjct: 2821 VFSWGEGDDGKLGHFSRMPR----LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 2876

Query: 59   --------TKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                      T+  P  V  L   +++Q A G      LA+ D+G  ++ G  +  + G 
Sbjct: 2877 YGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSLGDGDLWKIGP 2936

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             PE K            IPQ    +L    V Q+  G   S+ LT+ G VWTWG+     
Sbjct: 2937 GPEVKGCN---------IPQNIE-RLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFR 2986

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAV---GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               G    +  P  V+GL   K++A    GA H LA+ + G ++AWG+N++GQ G G T 
Sbjct: 2987 LGHGSDVHVRKPQVVEGLRGKKIVACSCSGALHCLAVTDSGQVYAWGDNDHGQQGNGTTT 3046

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
               +P  VQGL G  +  +A G  HS A T
Sbjct: 3047 VNRKPTLVQGLEGQKITRVACGSSHSVAWT 3076



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 171/398 (42%), Gaps = 71/398 (17%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK---- 60
            T + +WG  +  QLG   N++ +     + L    V  V  GS++  A+  +GK      
Sbjct: 2710 TKVFSWGLNDKDQLGGLKNKKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGE 2769

Query: 61   --------------TENIPS-QVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEY 103
                          T  IP   + ALS+  + + A+  G          G+ ++WG  + 
Sbjct: 2770 ATKWPAWGLGISSGTVPIPHGXITALSSYVVKKVAVHSGTSQTGFXPVDGKVFSWGEGDD 2829

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
            G+ G                        P+LI       +R +A G +HS  LT  G ++
Sbjct: 2830 GKLGHFSR-------------------MPRLIEALKTKRIRDIACGSSHSAALTSSGELY 2870

Query: 157  TWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNE 208
            TWG         GD      P  V+ L   ++I V         LAL ++G +++ G+ +
Sbjct: 2871 TWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSLGDGD 2930

Query: 209  YGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
              ++G G + +  + P  ++ L+G  +  I  G   S ALT  G V+ WG+G++ RLG G
Sbjct: 2931 LWKIGPGPEVKGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHG 2990

Query: 268  DNDKSSKMVPQKVNLLAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
             +    K  PQ V  L G+ IV  SC G  H +A+T  G ++++G  DHG+ G G     
Sbjct: 2991 SDVHVRK--PQVVEGLRGKKIVACSCSGALHCLAVTDSGQVYAWGDNDHGQQGNGTTTVN 3048

Query: 327  GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             +P  V            G++ + I + VACG  H++A
Sbjct: 3049 RKPTLV-----------QGLEGQKITR-VACGSSHSVA 3074



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3699 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3758

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3759 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3818

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3819 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 3873



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 38/222 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDG- 57
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2863 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2922

Query: 58   ----------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                            + K  NIP  +  L+   + Q   G    LA+   G  + WG  
Sbjct: 2923 VFSLGDGDLWKIGPGPEVKGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKG 2982

Query: 102  EYGQCGEEPE---RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
            +Y + G   +   RK      LR   ++   C          +G  H + +T  G V+ W
Sbjct: 2983 DYFRLGHGSDVHVRKPQVVEGLRGKKIVACSC----------SGALHCLAVTDSGQVYAW 3032

Query: 159  GQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
            G         G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3033 GDNDHGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3074


>gi|299471207|emb|CBN79063.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 513

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 158/336 (47%), Gaps = 56/336 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG GEDGQLG+G+  +++   +V AL+   V  V  GS +++ + +DG   T     
Sbjct: 9   VYSWGRGEDGQLGLGDTNDQDRPVLVDALKSKGVVQVACGSGHTVVLSEDGAVYTWGRGD 68

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                      + +P  V AL   +IVQA  G +H  AV D+G  Y WGG  YG+ G   
Sbjct: 69  DGRLGHGDNGWKYVPRIVEALEGQRIVQATCGSYHTAAVTDKGELYTWGGGMYGKLGHGN 128

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTREGHVWTWGQP--- 161
           E               P  C  K +      V Q+A G  H+VVLT  G V+TWG     
Sbjct: 129 ESGH------------PTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENG 176

Query: 162 ---WPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  D  Q  +P  ++ L+   V  +A   FH  AL   G ++ WG  ++G+LG G 
Sbjct: 177 VVGHTNADGHQY-LPRMLESLQAKTVTQVAACGFHTAALTAAGEIFTWGEGKFGRLGHGM 235

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE-----------HGRLG 265
            + +  P  V+ L G  +  +A GG+HS A+ D GE+Y WG GE           HG+LG
Sbjct: 236 ERNQMVPRMVEALMGKRVGHVACGGFHSAAILDSGELYTWGGGEHGQVYTFGNGDHGKLG 295

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            GD  K S  VP  V  L    +V+V+    H+ AL
Sbjct: 296 HGDVRKVS--VPTLVAGLVKMHVVKVASYNEHTAAL 329



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 140/283 (49%), Gaps = 29/283 (10%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G  Y+WG  E GQ G       D      R +++    +  ++  QVA G  H+VVL+ +
Sbjct: 7   GLVYSWGRGEDGQLGLGDTNDQD------RPVLVDALKSKGVV--QVACGSGHTVVLSED 58

Query: 153 GHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGN 206
           G V+TWG+        GD     VP  V+ LE  +++    G++H  A+ + G L+ WG 
Sbjct: 59  GAVYTWGRGDDGRLGHGDNGWKYVPRIVEALEGQRIVQATCGSYHTAAVTDKGELYTWGG 118

Query: 207 NEYGQLGTGDTQPRSQPIPVQGL--SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
             YG+LG G+      P  V+ L   G  +  IA G  H+  LTD G+VY WG  E+G +
Sbjct: 119 GMYGKLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVV 178

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           G  + D   + +P+ +  L  + + QV+  G H+ ALT  G IF++G G  GRLG+G   
Sbjct: 179 GHTNAD-GHQYLPRMLESLQAKTVTQVAACGFHTAALTAAGEIFTWGEGKFGRLGHG--- 234

Query: 325 TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  +  N   PR     + +R     VACGG H+ AI++
Sbjct: 235 -------MERNQMVPRMVEALMGKR--VGHVACGGFHSAAILD 268



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 125/277 (45%), Gaps = 42/277 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG G+DG+LG G+N  +    +V+ALE  ++     GS ++ A+ D G+  T    
Sbjct: 60  AVYTWGRGDDGRLGHGDNGWKYVPRIVEALEGQRIVQATCGSYHTAAVTDKGELYTWGGG 119

Query: 62  ------------ENIPSQVNALSN--TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                          P  V  L +   ++ Q A G  H + + D G+ Y WG  E G  G
Sbjct: 120 MYGKLGHGNESGHPTPCMVKHLRDEGARVTQIACGSRHTVVLTDLGKVYTWGDKENGVVG 179

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                  D  + L R +   Q       V QVAA G H+  LT  G ++TWG+       
Sbjct: 180 HT---NADGHQYLPRMLESLQ----AKTVTQVAACGFHTAALTAAGEIFTWGEGKFGRLG 232

Query: 164 PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ---------- 211
            G  +   VP  V+ L  ++V  +A G FH+ A+ + G L+ WG  E+GQ          
Sbjct: 233 HGMERNQMVPRMVEALMGKRVGHVACGGFHSAAILDSGELYTWGGGEHGQVYTFGNGDHG 292

Query: 212 -LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
            LG GD +  S P  V GL  + +V +A+   H+ AL
Sbjct: 293 KLGHGDVRKVSVPTLVAGLVKMHVVKVASYNEHTAAL 329


>gi|402873774|ref|XP_003919728.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2
            [Papio anubis]
          Length = 4123

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3242 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3301

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3302 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3361

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3362 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 3413

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3414 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3473

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3474 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3531

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3532 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 3587

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 3588 Q--GKKVNR------VACGSAHTLA---WSTSK 3609



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2270 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 2320

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 2321 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 2380

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2381 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 2440

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 2441 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2498

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2499 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 2547

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 2548 IVH-VAVGALHCLAVTD 2563



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2302 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 2357

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 2358 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 2417

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 2418 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2462

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2463 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2518

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 2519 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 2578

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2579 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 2614



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3343 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3370

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3371 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 3426

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 3427 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 3473

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3474 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3533

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3534 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 3591

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 3592 VNRVACGSAHTLA 3604



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3241 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3300

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3301 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3360

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3361 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 3415



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2403 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2462

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2463 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2522

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2523 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 2574

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2575 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 2612


>gi|380817670|gb|AFE80709.1| E3 ubiquitin-protein ligase HERC2 [Macaca mulatta]
          Length = 4829

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3948 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4007

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4008 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4067

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4068 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4119

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4120 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4179

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4180 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4237

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4238 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4293

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4294 Q--GKKVNR------VACGSAHTLA---WSTSK 4315



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2976 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3026

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3027 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3086

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3087 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3146

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3147 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3204

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3205 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3253

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3254 IVH-VAVGALHCLAVTD 3269



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3008 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3063

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3064 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3123

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3124 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3168

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3169 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3224

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3225 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3284

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3285 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3320



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4049 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4076

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4077 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4132

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4133 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4179

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4180 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4239

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4240 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4297

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4298 VNRVACGSAHTLA 4310



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3947 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4006

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4007 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4066

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4067 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4121



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3109 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3168

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3169 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3228

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3229 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3280

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3281 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3318


>gi|126032348|ref|NP_004658.3| E3 ubiquitin-protein ligase HERC2 [Homo sapiens]
 gi|308153453|sp|O95714.2|HERC2_HUMAN RecName: Full=E3 ubiquitin-protein ligase HERC2; AltName: Full=HECT
            domain and RCC1-like domain-containing protein 2
          Length = 4834

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|4079809|gb|AAD08657.1| HERC2 [Homo sapiens]
          Length = 4834

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|380787033|gb|AFE65392.1| E3 ubiquitin-protein ligase HERC2 [Macaca mulatta]
          Length = 4834

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|356991167|ref|NP_001239305.1| E3 ubiquitin-protein ligase HERC2 [Gallus gallus]
          Length = 4839

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3958 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4017

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4018 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4077

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4078 HGNRSPCDRPRVIESLRGIE--------VVDIAAGGAHSACITAAGDLFTWGKGRYGRLG 4129

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4130 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4189

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+ L +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4190 CKVPMKIDSLTDLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4247

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4248 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4303

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4304 Q--GKKINR------VACGSAHTLA---WSTSK 4325



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 167/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V +L++  IV+ A    G H LA+  
Sbjct: 454 VVQIACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIAAHSDGHHYLALSA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  ++WG      CG       D GR+   D V  +   PKLI           V  +A
Sbjct: 514 NGEVFSWG------CG-------DGGRLGHGDTVPLEE--PKLISALSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYTWGKGDNQRLGHGTEEHVR--YPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     ++T  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRITKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2985 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3035

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G +++WG+      G   +++   P 
Sbjct: 3036 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKIFSWGEGDDGKLGHFSRMNCDKPR 3095

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3096 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3155

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3213

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3214 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3262

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3263 IVH-VAVGALHCLAVTD 3278



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  +VQ A      L +   GR Y    N            D  G  L    
Sbjct: 443 PIQCEGLANLGVVQIACAEKRFLILSRNGRVYTQAYN-----------SDTLGPQLV--- 488

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
              Q  A + IV+  A + G H + L+  G V++WG             P  + K IS  
Sbjct: 489 ---QSLASRNIVKIAAHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISAL 545

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL GL 
Sbjct: 546 SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLK 605

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   DIV+V
Sbjct: 606 VIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDIVKV 663

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   S+ALT+DG ++++G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 664 RCGSQFSIALTKDGQVYTWGKGDNQRLGHGTEEHVRYPKLL-----------EGLKGKKV 712

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 713 ID-VAAGSTHCLALTE 727



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 156/334 (46%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     +   + AL  Y V+ V   +G R+++A+  DGK  +  
Sbjct: 3017 VYACGEATNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKIFSWG 3076

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 3077 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLG 3136

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 3137 H----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 3181

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 3182 GD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 3238 YFRLGHGTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGT 3297

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3298 TTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3329



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2964 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 3013

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 3014 EGKVYACGEA-TNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKI 3072

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 3073 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3132

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 3133 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 3190

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 3191 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 3226



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 121/270 (44%), Gaps = 32/270 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G   
Sbjct: 4059 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDIAAGGAHSACITAAGDLF 4118

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 4119 TWGKGRYGRLGHGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGD 4178

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            YG+ G      D     ++ D +        L V +V  G   SV LT+ G V+TWG+  
Sbjct: 4179 YGKLGR--GGSDGCKVPMKIDSLT------DLGVVKVECGSQFSVALTKSGAVYTWGKGD 4230

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G 
Sbjct: 4231 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 4290

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            T    +P  V  L G  +  +A G  H+ A
Sbjct: 4291 TNAIQRPRLVAALQGKKINRVACGSAHTLA 4320



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +++   + +WG G+ G+LG G+    E   ++ AL   +    V  +  GS  S AI  +
Sbjct: 511 LSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                + IP  V  L   K++  + G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   S+ LT++G V+TW
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDIVKVRCGSQFSIALTKDGQVYTW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRITKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3957 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4016

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4017 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4076

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 4077 GHGNRSPCDR--PRVIESLRGIEVVDIAAGGAHSACITAAGDLFTWGKGRYGRLGHG 4131



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 46/158 (29%)

Query: 221 SQPIPVQGLSGLTLVDIAAG---------------------------------------- 240
           S PI  +GL+ L +V IA                                          
Sbjct: 441 SGPIQCEGLANLGVVQIACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIA 500

Query: 241 ----GWHSTALTDDGEVYGWGRGEHGRLGFGDN--DKSSKMVPQKVNLLAGEDIVQVSCG 294
               G H  AL+ +GEV+ WG G+ GRLG GD    +  K++       AG+ +V ++CG
Sbjct: 501 AHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKLISALSGKQAGKHVVHIACG 560

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            T+S A+T +G ++++GRG++GRLG+G       PM V
Sbjct: 561 STYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLV 598



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3118 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3178 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3238 YFRLGH------GTDVHVRKPQVVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3289

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3290 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3327


>gi|397515765|ref|XP_003828114.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2
            [Pan paniscus]
          Length = 4839

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3958 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4017

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4018 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4077

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4078 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4129

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4130 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4189

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4190 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4247

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4248 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4303

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4304 Q--GKKVNR------VACGSAHTLA---WSTSK 4325



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2986 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3036

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3037 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3096

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3097 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3156

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3157 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3214

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3215 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3263

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3264 IVH-VAVGALHCLAVTD 3279



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 399 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 458

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 459 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 503

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 504 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 563

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 564 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 623

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 624 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 681

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 682 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 721



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 388 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 427

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 428 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 487

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 488 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 547

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 548 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 605

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 606 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 654

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 655 KKVID-VAAGSTHCLALTE 672



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3018 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3073

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3074 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3133

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3134 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3178

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3179 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3234

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3235 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3294

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3295 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3330



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4059 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4086

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4087 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4142

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4143 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4189

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4190 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4249

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4250 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4307

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4308 VNRVACGSAHTLA 4320



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 456 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 515

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 516 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 575

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 576 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 627

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 628 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 687

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 688 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 721



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3957 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4016

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4017 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4076

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4077 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4131



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3119 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3178

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3179 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3238

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3239 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3290

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3291 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3328


>gi|410265950|gb|JAA20941.1| hect domain and RLD 2 [Pan troglodytes]
          Length = 4834

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|410265952|gb|JAA20942.1| hect domain and RLD 2 [Pan troglodytes]
          Length = 4834

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|410223230|gb|JAA08834.1| hect domain and RLD 2 [Pan troglodytes]
 gi|410304312|gb|JAA30756.1| hect domain and RLD 2 [Pan troglodytes]
          Length = 4834

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|410349247|gb|JAA41227.1| hect domain and RLD 2 [Pan troglodytes]
          Length = 4834

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|410223232|gb|JAA08835.1| hect domain and RLD 2 [Pan troglodytes]
 gi|410304314|gb|JAA30757.1| hect domain and RLD 2 [Pan troglodytes]
          Length = 4834

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3953 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4012

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4013 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4072

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4073 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4124

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4125 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4184

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4242

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4243 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4298

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 Q--GKKVNR------VACGSAHTLA---WSTSK 4320



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2981 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3031

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3032 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3091

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3092 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3151

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3152 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3209

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3210 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3258

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3259 IVH-VAVGALHCLAVTD 3274



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3013 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3068

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3069 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3128

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3129 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3174 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3229

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3230 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3289

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3290 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3325



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4054 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4081

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4082 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4137

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4138 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4184

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4185 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4244

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4245 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4302

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4303 VNRVACGSAHTLA 4315



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3952 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4011

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4012 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4071

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4072 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4126



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3114 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3173

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3174 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3233

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3234 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3285

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3286 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3323


>gi|441617074|ref|XP_004088418.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like [Nomascus leucogenys]
          Length = 4530

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3649 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3708

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3709 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3768

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3769 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 3820

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3821 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3880

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3881 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3938

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3939 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 3994

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 3995 Q--GKKVNR------VACGSAHTLA---WSTSK 4016



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2677 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 2727

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 2728 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 2787

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2788 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 2847

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 2848 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2905

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2906 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 2954

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 2955 IVH-VAVGALHCLAVTD 2970



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2709 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 2764

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 2765 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 2824

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 2825 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2869

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2870 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2925

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 2926 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 2985

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2986 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3021



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3750 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3777

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3778 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 3833

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 3834 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 3880

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3881 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3940

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3941 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 3998

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 3999 VNRVACGSAHTLA 4011



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 16/166 (9%)

Query: 173 PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P++ +GL    V  IA      L L  +G +       Y Q    DT     P  VQGL+
Sbjct: 397 PIQCEGLANLGVTQIACAEKRFLILSRNGRV-------YTQAYNSDTL---APQLVQGLA 446

Query: 231 GLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKMVPQKVNLLAGE 286
              +V IAA   G H  AL   GEVY WG G+ GRLG GD    +  K++       AG+
Sbjct: 447 SRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGK 506

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +V ++CG T+S A+T +G ++++GRG++GRLG+G       PM V
Sbjct: 507 HVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLV 552



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3648 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3707

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3708 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3767

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3768 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 3822



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 34/191 (17%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 397 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 436

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 437 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 496

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 497 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 556

Query: 231 GLTLVDIAAGG 241
           GL ++D+A G 
Sbjct: 557 GLKVIDVACGS 567



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2810 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2869

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2870 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2929

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2930 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 2981

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2982 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3019



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 133/356 (37%), Gaps = 112/356 (31%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 408 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 467

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 468 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 512

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 513 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 572

Query: 193 LALQED-------------GALWAWGNNE---YGQLGTGDT------------------- 217
           LA+ E+             G L   G  E   Y QLG G                     
Sbjct: 573 LAVTENETTRLSVLWRSVLGILCVSGVVESFRYNQLGVGCRCRQRGWEPPQEDLKFFYGV 632

Query: 218 -----------------QPRSQPIPVQ------------GLSGL----TLVDIAAGGWHS 244
                            +P   P PV             G S L     ++D+AAG  H 
Sbjct: 633 LTRDVMLREGQIVFEAGRPGCVPTPVSSQKQALGYIVCGGCSSLGPGKKVIDVAAGSTHC 692

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            ALT+D EV+ WG  +  +    D  + +K  P  +  L  + I+ ++CG   S A
Sbjct: 693 LALTEDSEVHSWGSNDQCQ--HFDTLRVTKPEPAALPGLDAKHIMGITCGPAQSCA 746


>gi|296203907|ref|XP_002806938.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like, partial [Callithrix jacchus]
          Length = 4774

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3893 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3952

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3953 AGGRLGIGGTESVSSPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4012

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++             + V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4013 HGSRSPCDRPRVIES--------LRGVEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4064

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4065 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4124

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4125 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4182

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4183 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4238

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4239 Q--GKKVNR------VACGSAHTLA---WSTSK 4260



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2921 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 2971

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 2972 TVPIPRQITALSSYMVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3031

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3032 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3091

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  VPQ +  L G+ + Q
Sbjct: 3092 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--VPQNIERLNGQGVCQ 3149

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3150 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3198

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3199 IVH-VAVGALHCLAVTD 3214



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 150/321 (46%), Gaps = 50/321 (15%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           P  V  L++  IV+ A    G H LA+   G  Y+WG      CG       D GR+   
Sbjct: 415 PQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWG------CG-------DGGRLGHG 461

Query: 123 DIVIPQRCAPKLI-----------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
           D V  +   PK+I           V  +A G T+S  +T EG ++TWG+        G  
Sbjct: 462 DTVPLEE--PKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYXRLDHGRS 519

Query: 168 KQISVPVRVQGLEQVKLI----AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
               + + + GL++ K I     +     LA  E+G +W+WG+ +YG+LG G +     P
Sbjct: 520 AMNEILIMISGLDRQKFIYKSCGIRFAQTLAFYENGQVWSWGDGDYGKLGRGGSDGCKTP 579

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             ++ L  L +V +  G   S ALT DG+VY WG+G++ RLG G  +      P+ +  L
Sbjct: 580 KLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVR--YPKLLEGL 637

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            G+ ++ V+ G TH +ALT D  + S+G  D  +     +VT  +P  +P          
Sbjct: 638 QGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPAALP---------- 687

Query: 344 DGVDRRWIAKLVACGGRHTLA 364
            G+D + I   +ACG   + A
Sbjct: 688 -GLDTKHIVG-IACGPAQSFA 706



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2953 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYMVKKVAVHSGGRHATALTVDGKV 3008

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3009 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3068

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3069 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3113

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        +VP  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3114 VFSWGD----GDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3169

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3170 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3229

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3230 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3265



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 138/313 (44%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG                          GSR+    CD     
Sbjct: 3994 LSSEGEVYSWGEAEDGKLG-------------------------HGSRSP---CDR---- 4021

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4022 ----PRVIESLRGVEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4077

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4078 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4124

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4125 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4184

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4185 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4242

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4243 VNRVACGSAHTLA 4255



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAI--- 53
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI   
Sbjct: 441 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 500

Query: 54  -------------CDDGKTKTENIPSQVNALSNTKIVQAAIG--GWHCLAVDDQGRAYAW 98
                         D G++    I   ++ L   K +  + G      LA  + G+ ++W
Sbjct: 501 GELYTWGRGNYXRLDHGRSAMNEILIMISGLDRQKFIYKSCGIRFAQTLAFYENGQVWSW 560

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 561 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 612

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 613 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 672

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 673 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 706



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3892 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3951

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3952 GAGGRLGIGGTESVSSPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4011

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G      +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4012 GHGSRSPCDR--PRVIESLRGVEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4066



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3054 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3113

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 N+P  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3114 VFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3173

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3174 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3225

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3226 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3263


>gi|24655113|ref|NP_728591.1| CG9153, isoform A [Drosophila melanogaster]
 gi|24655115|ref|NP_612098.2| CG9153, isoform B [Drosophila melanogaster]
 gi|23092754|gb|AAF47474.2| CG9153, isoform A [Drosophila melanogaster]
 gi|23092755|gb|AAF47475.2| CG9153, isoform B [Drosophila melanogaster]
          Length = 1058

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 174/347 (50%), Gaps = 39/347 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           MAS   +  WGS   GQLG+G  E+ +   +  +  P+     V+ V  G R++L +   
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQ--ILTPSQIPWTPDTAVQQVACGHRHTLFLTAT 58

Query: 57  GKTKT----------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           GK              ++P++    +  L +  I+Q   G  H LA+ D G+  +WG N+
Sbjct: 59  GKVYACGSNDYSQLGHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDND 118

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            GQ G   +++     I++   V+ Q     ++  Q+A G  HS+ LT  G +++WG   
Sbjct: 119 CGQLGHATDKE-----IVQLPKVVRQLVTKTVV--QIACGNNHSLALTSCGELYSWGSNI 171

Query: 163 -------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                   P D+   + P+R+  L  + L  IA G  H+  + + GA++ WG N  GQLG
Sbjct: 172 YGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   RS P  ++ L  L +  +A G   S  LT++G V+  G G +G+LG G +  S+
Sbjct: 232 LNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFS--SN 289

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
           +M+P+ V  L G  I QV+CG  H++AL    G +++FG G  G+LG
Sbjct: 290 EMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLG 336



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 132/282 (46%), Gaps = 36/282 (12%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREG 153
           Y WG   +GQ G         G I    I+ P +    P   V+QVA G  H++ LT  G
Sbjct: 8   YCWGSTSHGQLG--------LGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATG 59

Query: 154 HVWTWGQPWPPGDIKQI------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWG 205
            V+  G      D  Q+        P+ +  L+   +I +  G+ H+LAL + G + +WG
Sbjct: 60  KVYACGS----NDYSQLGHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWG 115

Query: 206 NNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           +N+ GQLG   D +    P  V+ L   T+V IA G  HS ALT  GE+Y WG   +G+L
Sbjct: 116 DNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQL 175

Query: 265 GFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           G    ND +    P ++  L G  +  ++CGG HS  +++ G +F +GR + G+LG   +
Sbjct: 176 GVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDE 235

Query: 324 VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                P +    +   R  G         + VACG   ++ +
Sbjct: 236 TNRSYPTQ----LKTLRTLG--------VRFVACGDEFSVFL 265



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P ++       + QV+CG  H++ LT  G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+        P + P+ IP  ++        ++   + CG RH+LA+ +W
Sbjct: 66  SNDYSQLGHDL------PTKRPLLIPELQD--------YVIIQICCGSRHSLALSDW 108



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 100/249 (40%), Gaps = 35/249 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG   ++E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 111 VLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSN 170

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 171 IYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 230

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G      D+T R     +    +    L VR VA G   SV LT EG V+T G       
Sbjct: 231 G----LNDETNRSYPTQL----KTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQL 282

Query: 163 PPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQP 219
             G      +P  V  L    +  +A G  H LAL    G ++A+G    GQLGT  T+ 
Sbjct: 283 GHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKS 342

Query: 220 RSQPIPVQG 228
              P  V G
Sbjct: 343 LMLPQVVIG 351



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 213 ISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 272

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR YA+G    
Sbjct: 273 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSS 332

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              L++RQ+ +GG  S+V T
Sbjct: 333 GQLGTR-----STKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGGDQSIVTT 387

Query: 151 REGHVWTWGQPWPPGDIK 168
                  +    PP D +
Sbjct: 388 T-----LFVDKVPPEDFR 400


>gi|410920940|ref|XP_003973941.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Takifugu rubripes]
          Length = 4822

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 186/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3941 TIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4000

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4001 AGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4060

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++             + V  +AAGG HS  +T  G ++TWG+       
Sbjct: 4061 HGNRSPCDRPRVIES--------LRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLG 4112

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V  L+  ++I V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4113 HGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGDYGKLGRGGSDG 4172

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +  +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4173 CKIPMKIDSLTGLGVTKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4230

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4231 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4286

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  ++R      VACG  HTLA   W T +
Sbjct: 4287 Q--GKKINR------VACGSAHTLA---WSTSK 4308



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 182/387 (47%), Gaps = 49/387 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 2945 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYACGE 3004

Query: 59   -----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                       + T  IP Q+ ALSN  + + A+  GG H +A+   G+ ++WG  + G+
Sbjct: 3005 ATNGRLGLGLSSGTIPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGK 3064

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  +T  G +++WG      
Sbjct: 3065 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAAITSSGELYSWGLGEYGR 3116

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 3117 LGHGDNATQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 3176

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            +  + P  ++ L+G  +  I  G   S ALT  G V+ WG+G++ RLG G +    K  P
Sbjct: 3177 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK--P 3234

Query: 278  QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            Q V  L G+ IV V+ G  H +A+T  G ++++G  DHG+ G G      +P  V     
Sbjct: 3235 QMVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTTTVNRKPTLV----- 3289

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLA 364
                   G++ + I + VACG  H++A
Sbjct: 3290 ------QGLEGQKITR-VACGSSHSVA 3309



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 44/309 (14%)

Query: 33  KALEPYKVRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGW 84
           K+L    V  +V   +  L +   G   T+N       P  +++LS+ KIV+ A    G 
Sbjct: 432 KSLSSLGVTQIVCSEKGFLILSSSGAVYTQNYKSTTLAPMLIHSLSSRKIVKLAAHPDGQ 491

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI--------- 135
           H LA+   G  ++WG      CG       D GR+   D    +   P +I         
Sbjct: 492 HYLALSSNGEVFSWG------CG-------DGGRLGHGDATYLEE--PTMIAAFNGKQAG 536

Query: 136 --VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV-- 187
             V  +A G T+S V+T +G ++TWG+        G  +  + P+ V  L+ +K++ V  
Sbjct: 537 KHVVHIACGSTYSAVITIDGELYTWGRGNYGRLGHGSSEDQTTPMLVTALKGLKVVDVAC 596

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G    LA+ E+G +W+WG+ +YG+LG G +     P  V+ L  L +V +  G   S 
Sbjct: 597 GSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLVEKLQDLDIVKVCCGSQFSV 656

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALT DG+VY WG+G++ RLG G ++      P+ ++ L G+ +V V+ G TH +ALT DG
Sbjct: 657 ALTKDGQVYTWGKGDNQRLGHGTDEHVR--FPKLLDTLQGKKVVDVAVGSTHCLALTDDG 714

Query: 306 HIFSFGRGD 314
            + S+G  D
Sbjct: 715 EVHSWGSND 723



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 167/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2967 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYA--------CGEATNGRLGLG-LSSG 3017

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             I IP++       +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 3018 TIPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3077

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L++WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3078 LIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDNATQLRPKLVKVLLGH 3137

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3138 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3195

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3196 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQMV-----------EGLRGKK 3244

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3245 IVH-VAVGALHCLAVTD 3260



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            I A G   +G+LG+G +       R+    + AL  Y V+ V   +G R+++A+  DGK 
Sbjct: 2999 IYACGEATNGRLGLGLSSGTIPIPRQ----ITALSNYVVKKVAVHSGGRHAMALTVDGKV 3054

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y+WG  EY
Sbjct: 3055 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYSWGLGEY 3114

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G       D    LR          PKL+       V QVA G     ++ LT EG 
Sbjct: 3115 GRLGH-----GDNATQLR----------PKLVKVLLGHRVIQVACGSRDAQTLALTDEGL 3159

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3160 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3215

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3216 GKGDYFRLGHGTDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3275

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3276 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3311



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 115/210 (54%), Gaps = 14/210 (6%)

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           ++I    + K++       G H + L+  G V++WG         GD   +  P  +   
Sbjct: 471 MLIHSLSSRKIVKLAAHPDGQHYLALSSNGEVFSWGCGDGGRLGHGDATYLEEPTMIAAF 530

Query: 180 ------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
                 + V  IA G+ ++  +  DG L+ WG   YG+LG G ++ ++ P+ V  L GL 
Sbjct: 531 NGKQAGKHVVHIACGSTYSAVITIDGELYTWGRGNYGRLGHGSSEDQTTPMLVTALKGLK 590

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +VD+A G     + A+T++G+V+ WG G++G+LG G +D      P+ V  L   DIV+V
Sbjct: 591 VVDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLVEKLQDLDIVKV 648

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            CG   SVALT+DG ++++G+GD+ RLG+G
Sbjct: 649 CCGSQFSVALTKDGQVYTWGKGDNQRLGHG 678



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 36/272 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G+  
Sbjct: 4042 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELF 4101

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V+AL   +++  A G      L + D    ++WG  +
Sbjct: 4102 TWGKGRYGRLGHGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGD 4161

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            YG+ G    R    G        IP +      L V +V  G   SV LT+ G V+TWG+
Sbjct: 4162 YGKLG----RGGSDG------CKIPMKIDSLTGLGVTKVECGSQFSVALTKSGAVYTWGK 4211

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG 
Sbjct: 4212 GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGD 4271

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G T    +P  V  L G  +  +A G  H+ A
Sbjct: 4272 GTTNAIQRPRLVAALQGKKINRVACGSAHTLA 4303



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 4/114 (3%)

Query: 223 PIPVQGLSGLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKMVPQ 278
           P+ +  LS   +V +AA   G H  AL+ +GEV+ WG G+ GRLG GD    +   M+  
Sbjct: 470 PMLIHSLSSRKIVKLAAHPDGQHYLALSSNGEVFSWGCGDGGRLGHGDATYLEEPTMIAA 529

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                AG+ +V ++CG T+S  +T DG ++++GRG++GRLG+G       PM V
Sbjct: 530 FNGKQAGKHVVHIACGSTYSAVITIDGELYTWGRGNYGRLGHGSSEDQTTPMLV 583



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 41/275 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           ++S   + +WG G+ G+LG G+    E   ++ A    +    V  +  GS  S  I  D
Sbjct: 496 LSSNGEVFSWGCGDGGRLGHGDATYLEEPTMIAAFNGKQAGKHVVHIACGSTYSAVITID 555

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                +  P  V AL   K+V  A G      LAV + G+ ++W
Sbjct: 556 GELYTWGRGNYGRLGHGSSEDQTTPMLVTALKGLKVVDVACGSGDAQTLAVTENGQVWSW 615

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   SV LT++G V+TW
Sbjct: 616 GDGDYGKLGRGGSDGCKTPKLVEK--------LQDLDIVKVCCGSQFSVALTKDGQVYTW 667

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  +  L+  K+  +AVG+ H LAL +DG + +WG+N+  +L
Sbjct: 668 GKGDNQRLGHGTDEHVRFPKLLDTLQGKKVVDVAVGSTHCLALTDDGEVHSWGSND--KL 725

Query: 213 GTGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              DT   + QP  + GL    +V I+ G   S A
Sbjct: 726 QHFDTLSNKKQPKALPGLKH--IVGISCGPGQSFA 758



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3940 GTIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3999

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4000 GAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4059

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 4060 GHGNRSPCDR--PRVIESLRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLGHG 4114



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  + +WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3100 ITSSGELYSWGLGEYGRLGHGDNATQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGL 3159

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3160 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3219

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  ++      K++   VA G  H + +T  G V+ WG   
Sbjct: 3220 YFRLGH------GTDVHVRKPQMVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3271

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3272 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3309



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK---TEN 63
           +  WG G++ +LG G +E   +  ++  L+  KV  V  GS + LA+ DDG+     + +
Sbjct: 664 VYTWGKGDNQRLGHGTDEHVRFPKLLDTLQGKKVVDVAVGSTHCLALTDDGEVHSWGSND 723

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGG 100
                + LSN K  +A  G  H + +    G+++AW  
Sbjct: 724 KLQHFDTLSNKKQPKALPGLKHIVGISCGPGQSFAWSS 761


>gi|376260724|ref|YP_005147444.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium sp. BNL1100]
 gi|373944718|gb|AEY65639.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium sp. BNL1100]
          Length = 985

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 185/385 (48%), Gaps = 54/385 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  ++  WG  + GQLG G    R  +  V+      + ++ +G+ +SLA+ D     
Sbjct: 240 LKSDGTVWTWGENDYGQLGDGTTATR--LSPVQVQNLSGIIAISSGNSHSLALKDDGTVW 297

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T ++ IPSQV  LS   IV  + G ++ +A+ + G  + WG N  G
Sbjct: 298 AWGDNESGQLGDGTTNSKYIPSQVQGLSG--IVSISCGFYYSMALKNDGTVWVWGDNTSG 355

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
           Q G+        G    R+  +P      +I   +A G  HS+ L  +G VWTWG     
Sbjct: 356 QLGD--------GTTTDRNTAVPVSGLDGVIA--IACGVNHSMALRNDGTVWTWGFNAFG 405

Query: 163 PPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             GD  ++S    V + GL+ +  I  G  H++AL++DG +WAWG+N+YGQLG G     
Sbjct: 406 QLGDGTKVSKNTAVPISGLDGIIAITCGTSHSMALKDDGTVWAWGDNQYGQLGNGTFISN 465

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P  V  LSG+    I  G   S AL  DG V+ WG  E+G LG G    +++++    
Sbjct: 466 TTPSQVSNLSGIK--SIFCGYSTSFALKPDGTVWAWGNNEYGELGKG---FTTRVIYPTE 520

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            L  G DI  +S G +H +AL  DG ++++G   +G+LG G       P++V        
Sbjct: 521 TLNIG-DIKAISIGSSHCLALKNDGTVWAWGDNRYGQLGDGTTTIKSLPVQVS------- 572

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
               G+        ++ GG H+LA+
Sbjct: 573 ----GISG---ITAISAGGSHSLAL 590



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 36/295 (12%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           I++ + G  H LA++  G  +A G N+YGQ G            +  +  IP     K  
Sbjct: 177 IIKVSGGESHTLALESDGTVWACGENDYGQLGNN--------NTIDINSPIPVEGLNK-- 226

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFH 191
           V  ++AG  +S+ L  +G VWTWG+        G       PV+VQ L  +  I+ G  H
Sbjct: 227 VSSISAGKYYSMALKSDGTVWTWGENDYGQLGDGTTATRLSPVQVQNLSGIIAISSGNSH 286

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +LAL++DG +WAWG+NE GQLG G T  +  P  VQGLSG  +V I+ G ++S AL +DG
Sbjct: 287 SLALKDDGTVWAWGDNESGQLGDGTTNSKYIPSQVQGLSG--IVSISCGFYYSMALKNDG 344

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED-IVQVSCGGTHSVALTRDGHIFSF 310
            V+ WG    G+LG G     +  VP     ++G D ++ ++CG  HS+AL  DG ++++
Sbjct: 345 TVWVWGDNTSGQLGDGTTTDRNTAVP-----VSGLDGVIAIACGVNHSMALRNDGTVWTW 399

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G    G+LG G KV+         N   P +  DG+    IA  + CG  H++A+
Sbjct: 400 GFNAFGQLGDGTKVSK--------NTAVPISGLDGI----IA--ITCGTSHSMAL 440



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 22/281 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T +I S +      K+   + G ++ +A+   G  + WG N+YGQ G+        
Sbjct: 208 GNNNTIDINSPIPVEGLNKVSSISAGKYYSMALKSDGTVWTWGENDYGQLGD-------- 259

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
           G    R  + P +      +  +++G +HS+ L  +G VW WG         G      +
Sbjct: 260 GTTATR--LSPVQVQNLSGIIAISSGNSHSLALKDDGTVWAWGDNESGQLGDGTTNSKYI 317

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P +VQGL  +  I+ G ++++AL+ DG +W WG+N  GQLG G T  R+  +PV GL G 
Sbjct: 318 PSQVQGLSGIVSISCGFYYSMALKNDGTVWVWGDNTSGQLGDGTTTDRNTAVPVSGLDG- 376

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED-IVQV 291
            ++ IA G  HS AL +DG V+ WG    G+LG G     +  VP     ++G D I+ +
Sbjct: 377 -VIAIACGVNHSMALRNDGTVWTWGFNAFGQLGDGTKVSKNTAVP-----ISGLDGIIAI 430

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +CG +HS+AL  DG ++++G   +G+LG G  ++   P +V
Sbjct: 431 TCGTSHSMALKDDGTVWAWGDNQYGQLGNGTFISNTTPSQV 471



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 43/343 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           AWG+ E G+LG G       +   + L    ++++  GS + LA+ +DG           
Sbjct: 498 AWGNNEYGELGKGFTTRV--IYPTETLNIGDIKAISIGSSHCLALKNDGTVWAWGDNRYG 555

Query: 59  ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                 T  +++P QV+ +S    + A  GG H LA+   G  +AWG N  GQ G+  + 
Sbjct: 556 QLGDGTTTIKSLPVQVSGISGITAISA--GGSHSLALKSDGTVWAWGQNNVGQLGDGTKE 613

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
             +T          P + +    +  ++     S  L  +G VW WG       ++++++
Sbjct: 614 DRNT----------PVQVSELSGITVISNCIYRSFALKNDGTVWVWGSDSYNLPLEKMTM 663

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P+++ GL  +  I  G +HNLAL+ DG +WAWG N +GQ G G T   + P+ V GLSG+
Sbjct: 664 PIQISGLSGIIAIECGTYHNLALKNDGTVWAWGKNNFGQFGDGTTTTTNIPVQVSGLSGV 723

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
               IA GG  S AL  DG V+ WGR     +    +   +    ++V+ L+  +IV +S
Sbjct: 724 KA--IAVGGNRSIALKSDGTVWQWGR---ILVSVSPSTVETWTTARQVDGLS--EIVSIS 776

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
               ++VAL  DG +F++G  D+G+LG G   TT +    P++
Sbjct: 777 ----NNVALKNDGKVFTWGANDYGQLGDG--TTTARVTVAPVS 813



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 132/283 (46%), Gaps = 35/283 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ AWG    GQLG G  E+R     V  L    V S       S A+ +DG   
Sbjct: 590 LKSDGTVWAWGQNNVGQLGDGTKEDRNTPVQVSELSGITVISNCI--YRSFALKNDGTVW 647

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      +   +P Q++ LS   I+    G +H LA+ + G  +AWG N +GQ G+
Sbjct: 648 VWGSDSYNLPLEKMTMPIQISGLSG--IIAIECGTYHNLALKNDGTVWAWGKNNFGQFGD 705

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---PWPPG 165
                 +          IP + +    V+ +A GG  S+ L  +G VW WG+      P 
Sbjct: 706 GTTTTTN----------IPVQVSGLSGVKAIAVGGNRSIALKSDGTVWQWGRILVSVSPS 755

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            ++  +   +V GL ++  I+    +N+AL+ DG ++ WG N+YGQLG G T  R    P
Sbjct: 756 TVETWTTARQVDGLSEIVSIS----NNVALKNDGKVFTWGANDYGQLGDGTTTARVTVAP 811

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           V GL G  +  +A+    S  L +DG +  WG+   G+LG G+
Sbjct: 812 VSGLEG--VAGVASSDTTSMVLMNDGTIRAWGKNNFGQLGNGE 852


>gi|21711763|gb|AAM75072.1| RE53774p [Drosophila melanogaster]
          Length = 1058

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 174/347 (50%), Gaps = 39/347 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           MAS   +  WGS   GQLG+G  E+ +   +  +  P+     V+ V  G R++L +   
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQ--ILTPSQIPWTPDTAVQQVACGHRHTLFLTAT 58

Query: 57  GKTKT----------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           GK              ++P++    +  L +  I+Q   G  H LA+ D G+  +WG N+
Sbjct: 59  GKVYACGSNDYSQLGHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWGDND 118

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            GQ G   +++     I++   V+ Q     ++  Q+A G  HS+ LT  G +++WG   
Sbjct: 119 CGQLGHATDKE-----IVQLPKVVRQLVTKTVV--QIACGNNHSLALTSCGELYSWGSNI 171

Query: 163 -------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                   P D+   + P+R+  L  + L  IA G  H+  + + GA++ WG N  GQLG
Sbjct: 172 YGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLG 231

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   RS P  ++ L  L +  +A G   S  LT++G V+  G G +G+LG G +  S+
Sbjct: 232 LNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFS--SN 289

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
           +M+P+ V  L G  I QV+CG  H++AL    G +++FG G  G+LG
Sbjct: 290 EMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLG 336



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 132/282 (46%), Gaps = 36/282 (12%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREG 153
           Y WG   +GQ G         G I    I+ P +    P   V+QVA G  H++ LT  G
Sbjct: 8   YCWGSTSHGQLG--------LGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATG 59

Query: 154 HVWTWGQPWPPGDIKQI------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWG 205
            V+  G      D  Q+        P+ +  L+   +I +  G+ H+LAL + G + +WG
Sbjct: 60  KVYACGS----NDYSQLGHDLPTKRPLLIPELQDYVIIQICCGSRHSLALSDWGQVLSWG 115

Query: 206 NNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           +N+ GQLG   D +    P  V+ L   T+V IA G  HS ALT  GE+Y WG   +G+L
Sbjct: 116 DNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSNIYGQL 175

Query: 265 GFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           G    ND +    P ++  L G  +  ++CGG HS  +++ G +F +GR + G+LG   +
Sbjct: 176 GVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDE 235

Query: 324 VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                P +    +   R  G         + VACG   ++ +
Sbjct: 236 TNRSYPTQ----LKTLRTLG--------VRFVACGDEFSVFL 265



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P ++       + QV+CG  H++ LT  G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+        P + P+ IP  ++        ++   + CG RH+LA+ +W
Sbjct: 66  SNDYSQLGHDL------PTKRPLLIPELQD--------YVIIQICCGSRHSLALSDW 108



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 100/249 (40%), Gaps = 35/249 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG   ++E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 111 VLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSN 170

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 171 IYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 230

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G      D+T R     +    +    L VR VA G   SV LT EG V+T G       
Sbjct: 231 G----LNDETNRSYPTQL----KTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQL 282

Query: 163 PPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQP 219
             G      +P  V  L    +  +A G  H LAL    G ++A+G    GQLGT  T+ 
Sbjct: 283 GHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKS 342

Query: 220 RSQPIPVQG 228
              P  V G
Sbjct: 343 LMLPQVVIG 351



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 213 ISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 272

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR YA+G    
Sbjct: 273 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSS 332

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              L++RQ+ +GG  S+V T
Sbjct: 333 GQLGTR-----STKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGGDQSIVTT 387

Query: 151 REGHVWTWGQPWPPGDIK 168
                  +    PP D +
Sbjct: 388 T-----LFVDKVPPEDFR 400


>gi|60360320|dbj|BAD90404.1| mKIAA0393 protein [Mus musculus]
          Length = 1871

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 990  TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 1049

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 1050 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAKDGKLG 1109

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 1110 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 1161

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 1162 HSDSEDQLKPKLVEALQGHRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 1221

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 1222 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 1279

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 1280 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 1335

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 1336 Q--GKKVNR------VACGSAHTLA---WSTSK 1357



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +PS    LS   +VQ A G     AV  +G+ Y+        CGE    +   G +   
Sbjct: 17  KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYS--------CGEATNGRLGLG-MSSG 67

Query: 123 DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
            + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 68  TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 127

Query: 175 RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 128 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 187

Query: 233 TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 188 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 245

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 246 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 294

Query: 351 IAKLVACGGRHTLAIVE 367
           I   VA G  H LA+ +
Sbjct: 295 IVH-VAVGALHCLAVTD 310



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 154/327 (47%), Gaps = 45/327 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
           + + G   +G+LG+G +     +   + AL  Y V+ V   +G R++ A+  DGK  +  
Sbjct: 49  VYSCGEATNGRLGLGMSSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWG 108

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                          + P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 109 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLG 168

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPG 165
                     ++++  +++  R      V QVA G     ++ LT EG V++WG     G
Sbjct: 169 HGDNTTQLKPKMVK--VLLGHR------VIQVACGSRDAQTLALTDEGLVFSWGD----G 216

Query: 166 DIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
           D  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +Y +LG G
Sbjct: 217 DFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHG 276

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
                 +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G    + K 
Sbjct: 277 SDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQGNGTTTVNRK- 335

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALT 302
            P  V  L G+ I +V+CG +HSVA T
Sbjct: 336 -PTLVQGLEGQKITRVACGSSHSVAWT 361



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  +DG+LG GN                               CD     
Sbjct: 1091 LSSEGEVYSWGEAKDGKLGHGNRSP----------------------------CDR---- 1118

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 1119 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 1174

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 1175 EALQGHRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 1221

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 1222 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 1281

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 1282 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 1339

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 1340 VNRVACGSAHTLA 1352



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 56/176 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 989  GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 1048

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  + G+L
Sbjct: 1049 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAKDGKL 1108

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+
Sbjct: 1109 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 1162



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
           + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 150 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 209

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           ++  NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 210 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 269

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 270 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 321

Query: 161 --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                 G       P  VQGLE  ++  +A G+ H++A
Sbjct: 322 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 359


>gi|344298015|ref|XP_003420690.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like [Loxodonta africana]
          Length = 4838

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3957 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGYG 4016

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4017 AGGRLGIGGTESVSTPTLLESVQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4076

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4077 HGNRSPCDRPRVVESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4128

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4129 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4188

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4189 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4246

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4247 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4302

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4303 Q--GKKVNR------VACGSAHTLA---WSTSK 4324



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2983 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-LSSG 3033

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3034 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3093

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3094 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3153

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3154 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3211

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3212 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3260

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3261 IVH-VAVGALHCLAVTD 3276



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 164/352 (46%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +   G+  T+        P  V  L++  I++ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRSGRVYTQAYNSDALAPQLVQGLASRNIIKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +   +PV V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEVIPVLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPSALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3015 VYACGEATNGRLGLGLSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3070

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3071 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3130

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3131 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3175

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3176 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3231

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3232 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3291

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3292 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3327



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLASLGVTQIACAEKRFLILSRSGRVYTQAYNS--------------------DA 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + I++  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++    P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEVIPVLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4058 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4085

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  V +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4086 ----PRVVESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4141

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4142 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4188

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4189 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4248

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4249 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4306

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4307 VNRVACGSAHTLA 4319



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEVIPVLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPSALPGLDTKHIVGIACGPAQSFA 776



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3956 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGY 4015

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4016 GAGGRLGIGGTESVSTPTLLESVQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4075

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ V  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4076 GHGNRSPCDR--PRVVESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4130



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3116 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3175

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3176 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3235

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3236 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3287

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3288 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3325


>gi|449504701|ref|XP_002190698.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Taeniopygia
           guttata]
          Length = 991

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 182/397 (45%), Gaps = 60/397 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFLNKRVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K    P  V AL    IV  + G  H LA++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    R   ++ + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLPGTEECVR-------VPRNI----RSLSEIQIVQVACGYYHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     + K+ + P  ++ L  +    IA G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGYEYKKQTSPQMIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDDNDRYVPTLLKSLRSQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSVVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTV 341

Query: 333 -----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P +   P +     +  +  K +  GG  + A
Sbjct: 342 KGSWIPFSPQCPMSTDS--EECYCVKRIFSGGDQSFA 376



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKYGQLGLGY-----------------------------------EYK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L      Q A GG H   +   G  + WG N++GQ G      DD  R +
Sbjct: 177 KQTSPQMIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----LNDDNDRYV 232

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
               ++    + K++   +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 233 --PTLLKSLRSQKVV--HICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  I  G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSVVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTVKG 343


>gi|351699519|gb|EHB02438.1| Putative E3 ubiquitin-protein ligase HERC2 [Heterocephalus glaber]
          Length = 4833

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 188/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3957 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4016

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4017 AGGRLGIGGTESVSAPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4076

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4077 HGSRSPCDRPRVVESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4128

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4129 HSDSEDQLKPKLVEVLQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4188

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ ++ L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4189 CKVPMKIESLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4246

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4247 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4302

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4303 Q--GKKVNR------VACGSAHTLA---WSTSK 4324



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2984 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-LSSG 3034

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3035 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3094

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L  ++++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3095 LIEALRAKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3154

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3155 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3212

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3213 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3261

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3262 IVH-VAVGALHCLAVTD 3277



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  ++WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVFSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQGGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLEVVKVRCGSQFSVALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPRLLEGLHGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 151/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVFSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     QG + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQGGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   ++
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLEV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   SVALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPRLL-----------EGLHG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3016 VYACGEATNGRLGLGLSSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3071

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3072 FSWGEGDDGKLGHFSRMNCDKPRLIEALRAKRIRDIACGSSHSAALTSSGELYTWGLGEY 3131

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3132 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3176

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3177 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3232

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3233 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3292

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3293 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3328



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 140/313 (44%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG                          GSR+    CD     
Sbjct: 4058 LSSEGEVYSWGEAEDGKLG-------------------------HGSRSP---CDR---- 4085

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  V +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4086 ----PRVVESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4141

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
             +L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4142 EVLQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4188

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP++++ L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4189 CKVPMKIESLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4248

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4249 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4306

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4307 VNRVACGSAHTLA 4319



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVFSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQGGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   SV LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLEVVKVRCGSQFSVALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL   K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPRLLEGLHGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 56/190 (29%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3956 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4015

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4016 GAGGRLGIGGTESVSAPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4075

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            G G      +  P+ V  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+    
Sbjct: 4076 GHGSRSPCDR--PRVVESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE 4133

Query: 325  TTGQPMEVPI 334
               +P  V +
Sbjct: 4134 DQLKPKLVEV 4143



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3117 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3176

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3177 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3236

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3237 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3288

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3289 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3326


>gi|395741726|ref|XP_003777632.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Pongo
           abelii]
          Length = 1049

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYCHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|297686826|ref|XP_002820939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Pongo abelii]
          Length = 1057

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYCHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|410960764|ref|XP_003986957.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform 2 [Felis
            catus]
          Length = 4844

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 186/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3963 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4022

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4023 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4082

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4083 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4134

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+   ++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4135 HSDSEDQLKPKLVEALQGHHVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4194

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4195 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4252

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4253 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4308

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4309 Q--GKKVNR------VACGSAHTLA---WSTSK 4330



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2989 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3039

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3040 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3099

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3100 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3159

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3160 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3217

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3218 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3266

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3267 IVH-VAVGALHCLAVTD 3282



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++PV V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPVLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPVLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3021 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3076

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3077 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3136

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3137 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3181

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3182 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3237

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3238 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3297

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3298 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3333



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4064 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4091

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4092 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4147

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4148 EALQGHHVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4194

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4195 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4254

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4255 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4312

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4313 VNRVACGSAHTLA 4325



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPVLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3962 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4021

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4022 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4081

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4082 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4136



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3122 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3181

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3182 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3241

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3242 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3293

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3294 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3331


>gi|297686828|ref|XP_002820940.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Pongo abelii]
          Length = 979

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYCHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|410960762|ref|XP_003986956.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform 1 [Felis
            catus]
          Length = 4837

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 186/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3956 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4015

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4016 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4075

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4076 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4127

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+   ++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4128 HSDSEDQLKPKLVEALQGHHVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4187

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4245

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4246 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4301

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4302 Q--GKKVNR------VACGSAHTLA---WSTSK 4323



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3259

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3260 IVH-VAVGALHCLAVTD 3275



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++PV V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPVLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPVLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4057 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4084

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4085 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4140

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4141 EALQGHHVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4187

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4247

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4248 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4305

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4306 VNRVACGSAHTLA 4318



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPVLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3955 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4014

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4015 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4074

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4075 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4129



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|301615126|ref|XP_002937025.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC2-like [Xenopus (Silurana) tropicalis]
          Length = 4845

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 188/396 (47%), Gaps = 57/396 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3966 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4025

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4026 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4085

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  R+   LR   V+            +AAGG HS  +T  G ++TWG+    
Sbjct: 4086 HGNRSPCDRPRVIESLRGTEVV-----------DIAAGGAHSACITAAGELYTWGKGRYG 4134

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G 
Sbjct: 4135 RLGHGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 4194

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P+ +  L+G+ +  +  G   S ALT  G VY WG+G++ RLG G +D   +  
Sbjct: 4195 SDGCKVPMKIDSLTGVGVTKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR-- 4252

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P++V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  +
Sbjct: 4253 PRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLV 4308

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
             A +  G  ++R      VACG  HTLA   W T +
Sbjct: 4309 AALQ--GKKINR------VACGSAHTLA---WSTSK 4333



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 168/359 (46%), Gaps = 56/359 (15%)

Query: 33  KALEPYKVRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGW 84
           +AL    V  V    +  L +  +GK  T+        P  V  L++  IV+ A    G 
Sbjct: 446 EALANLGVTQVACAEKCFLILSRNGKLYTQAYNNNTLGPQLVQGLASRNIVKIAAHPDGQ 505

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI--------- 135
           H LA+      ++WG      CG       D GR+   D V  +   PKL+         
Sbjct: 506 HYLALSATSELFSWG------CG-------DGGRLGHGDTVSLEE--PKLVSALSGKQTG 550

Query: 136 --VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV-- 187
             V  +A G T+S  +T +G ++TWG+        G  +  +VP+ V GL+ +K++ V  
Sbjct: 551 KQVIHIACGSTYSAAITADGELYTWGRGNYGRLGHGSSEDQTVPMLVTGLKGLKVVDVSC 610

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G    L++ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S 
Sbjct: 611 GSGDAQTLSVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSI 670

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+T DG+VY WG+G++ RLG G  +      P+ +N L G+ +V V+ G TH +ALT  G
Sbjct: 671 AITKDGQVYSWGKGDNQRLGHGTEEHVR--YPKIMNGLQGKKVVDVAVGSTHCLALTESG 728

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            ++S+G  D  +     ++    P  +P           G+D + I   ++CG   + A
Sbjct: 729 EVYSWGSNDQCQHFDTLRIAKPVPSVLP-----------GLDSKHIVG-ISCGPAQSFA 775



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 154/321 (47%), Gaps = 54/321 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAY--AWGGNEYGQCGEEPERKDDTGRILRR 122
           P Q  AL+N  + Q A      L +   G+ Y  A+  N  G     P+           
Sbjct: 442 PIQCEALANLGVTQVACAEKCFLILSRNGKLYTQAYNNNTLG-----PQ----------- 485

Query: 123 DIVIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              + Q  A + IV+  A   G H + L+    +++WG         GD   +  P  V 
Sbjct: 486 ---LVQGLASRNIVKIAAHPDGQHYLALSATSELFSWGCGDGGRLGHGDTVSLEEPKLVS 542

Query: 178 GL------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            L      +QV  IA G+ ++ A+  DG L+ WG   YG+LG G ++ ++ P+ V GL G
Sbjct: 543 ALSGKQTGKQVIHIACGSTYSAAITADGELYTWGRGNYGRLGHGSSEDQTVPMLVTGLKG 602

Query: 232 LTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           L +VD++ G     + ++T++G+V+ WG G++G+LG G +D      P+ +  L   DIV
Sbjct: 603 LKVVDVSCGSGDAQTLSVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDIV 660

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG---V 346
           +V CG   S+A+T+DG ++S+G+GD+ RLG+G         E  +  P   N   G   V
Sbjct: 661 KVRCGSQFSIAITKDGQVYSWGKGDNQRLGHG--------TEEHVRYPKIMNGLQGKKVV 712

Query: 347 DRRWIAKLVACGGRHTLAIVE 367
           D       VA G  H LA+ E
Sbjct: 713 D-------VAVGSTHCLALTE 726



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 141/288 (48%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2964 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTA 3013

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H  AL  DG +
Sbjct: 3014 EGKVYACGEA-TNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHATALTVDGKV 3072

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 3073 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3132

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 3133 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 3190

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G  V +      + CG + +LA+ +
Sbjct: 3191 RG----GSEGCNIPQNI--ERLNGQAVCQ------IECGAQFSLALTK 3226



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 23/265 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2985 KVPSFSETLSALNVVQVAGGSKSLFAVTAEGKVYA--------CGEATNGRLGLG-ISSG 3035

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3036 TVPIPRQITALSNYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3095

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3096 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3155

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQAVCQ 3213

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDH 315
            + CG   S+ALT+ G ++++    H
Sbjct: 3214 IECGAQFSLALTKSGVVWTWXXTKH 3238



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4067 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4094

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L  T++V  A GG H   +   G  Y WG   YG+ G    E + K    
Sbjct: 4095 ----PRVIESLRGTEVVDIAAGGAHSACITAAGELYTWGKGRYGRLGHGDSEDQLKPKLV 4150

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   VI   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4151 EALQGYRVIDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4197

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  V +  V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4198 CKVPMKIDSLTGVGVTKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4257

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4258 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4315

Query: 288  IVQVSCGGTHSVA 300
            I +V+CG  H++A
Sbjct: 4316 INRVACGSAHTLA 4328



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 172/394 (43%), Gaps = 56/394 (14%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK---- 60
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 2963 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTAEGKVYACGE 3022

Query: 61   -------------TENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                         T  IP Q+ ALSN  + + A+  GG H  A+   G+ ++WG  + G+
Sbjct: 3023 ATNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGK 3082

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  +T  G ++TWG      
Sbjct: 3083 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAAITSSGELYTWGLGEYGR 3134

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 3135 LGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 3194

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG-RLGFGDNDKSSKMV 276
            +  + P  ++ L+G  +  I  G   S ALT  G V+ W   +H   + F   +   ++ 
Sbjct: 3195 EGCNIPQNIERLNGQAVCQIECGAQFSLALTKSGVVWTWXXTKHCLAVXFYYXNYLLELF 3254

Query: 277  PQKVN---LLAGEDIVQVSCGGTHSVALTR---DGHIFSFGRGDHGRLGYGRKVTTGQPM 330
              KV+   +L G+ +   +C     + + +      ++++G  DHG+ G G      +P 
Sbjct: 3255 LIKVSVRFVLLGQYL--XTCATYFKLNIIKIVISKKVYAWGDNDHGQQGNGTTTVNRKPT 3312

Query: 331  EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             V            G++ + I + VACG  H++A
Sbjct: 3313 LV-----------HGLEGQKITR-VACGSSHSVA 3334



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 40/276 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALE----PYKVRSVVAGSRNSLAICDD 56
           +++T+ + +WG G+ G+LG G+    E   +V AL       +V  +  GS  S AI  D
Sbjct: 510 LSATSELFSWGCGDGGRLGHGDTVSLEEPKLVSALSGKQTGKQVIHIACGSTYSAAITAD 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                + +P  V  L   K+V  + G      L+V + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDQTVPMLVTGLKGLKVVDVSCGSGDAQTLSVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   S+ +T++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDIVKVRCGSQFSIAITKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  + GL+  K+  +AVG+ H LAL E G +++WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKIMNGLQGKKVVDVAVGSTHCLALTESGEVYSWGSND--QC 739

Query: 213 GTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTA 246
              DT   ++P+P  + GL    +V I+ G   S A
Sbjct: 740 QHFDTLRIAKPVPSVLPGLDSKHIVGISCGPAQSFA 775



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 144/348 (41%), Gaps = 80/348 (22%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3017 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSNYVVKKVAVHSGGRHATALTVDGKV 3072

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3073 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3132

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3133 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3178 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQAVCQIECGAQFSLALTKSGVVWTW 3233

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD----------DGEVY 254
               ++              +    L  +++  +  G +  T  T             +VY
Sbjct: 3234 XXTKHC---LAVXFYYXNYLLELFLIKVSVRFVLLGQYLXTCATYFKLNIIKIVISKKVY 3290

Query: 255  GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
             WG  +HG+ G G    + K  P  V+ L G+ I +V+CG +HSVA T
Sbjct: 3291 AWGDNDHGQQGNGTTTVNRK--PTLVHGLEGQKITRVACGSSHSVAWT 3336



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3965 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 4024

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4025 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4084

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G ++++G+G +GRLG+G
Sbjct: 4085 GHGNRSPCDR--PRVIESLRGTEVVDIAAGGAHSACITAAGELYTWGKGRYGRLGHG 4139



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 57/262 (21%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR++          
Sbjct: 3118 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDA---------- 3167

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      LA+ D+G  ++WG  ++G+ G    R    G  +
Sbjct: 3168 ------------------------QTLALTDEGLVFSWGDGDFGKLG----RGGSEGCNI 3199

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP-----------PGDIKQ 169
             ++I   +R   + +  Q+  G   S+ LT+ G VWTW                  ++  
Sbjct: 3200 PQNI---ERLNGQAVC-QIECGAQFSLALTKSGVVWTWXXTKHCLAVXFYYXNYLLELFL 3255

Query: 170  ISVPVRVQGLEQVKLIAVGAFHNLALQE---DGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            I V VR   L Q  L     +  L + +      ++AWG+N++GQ G G T    +P  V
Sbjct: 3256 IKVSVRFVLLGQY-LXTCATYFKLNIIKIVISKKVYAWGDNDHGQQGNGTTTVNRKPTLV 3314

Query: 227  QGLSGLTLVDIAAGGWHSTALT 248
             GL G  +  +A G  HS A T
Sbjct: 3315 HGLEGQKITRVACGSSHSVAWT 3336


>gi|386720863|ref|YP_006187188.1| hypothetical protein B2K_01550 [Paenibacillus mucilaginosus K02]
 gi|384087987|gb|AFH59423.1| hypothetical protein B2K_01550 [Paenibacillus mucilaginosus K02]
          Length = 1164

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 174/362 (48%), Gaps = 49/362 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           WG    GQLG G +        V  L   K+  +  G  +++A+  DG            
Sbjct: 653 WGYNGHGQLGTGTSNSTSVPGKVINLTGMKM--IAGGENHTVALRSDGTLHTWGYNGYGQ 710

Query: 58  ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                T T   P QV+ L+N   V A  G  H LA+   G  +A+G N YGQ G+     
Sbjct: 711 LGDDSTTTRYSPVQVSTLTNWTAVSA--GENHSLALKSDGTVWAFGYNGYGQLGDGTTSS 768

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
             T          P +      V  +AAG   S+ L  +G VW+WGQ        G   +
Sbjct: 769 QRT----------PVQVKDLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGTTTR 818

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            SVPV+V  L  VK IA G +H +AL++DG+++AWG N  G+LG   T   SQ  PVQ  
Sbjct: 819 SSVPVQVALLTDVKAIAAGDYHGVALKKDGSVFAWGYNGNGELGNSST--ISQSTPVQ-- 874

Query: 230 SGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           SG+T +  IAAG +H+ AL  DG V+ WG   +G+LG G+N  +S+ VP  +  LA   I
Sbjct: 875 SGVTGIKGIAAGPYHTLALKSDGTVWSWGYNGYGQLGNGNN--TSRSVPAAIPGLA--SI 930

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV------PINIPAPRNA 342
             ++ G   S+A   DG ++S+GR  +G+LG G  V T  P +V      P +  AP   
Sbjct: 931 ASIAAGENQSIAYGNDGILYSWGRNANGQLGNGTTVDTNVPHKVIGPNINPADTTAPAAV 990

Query: 343 GD 344
            D
Sbjct: 991 SD 992



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 147/305 (48%), Gaps = 44/305 (14%)

Query: 74  TKIVQAAIG---------GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           T +  AA+G         G H + +   G  + WG N +GQ G        TG       
Sbjct: 620 TAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLG--------TGT--SNST 669

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--WPPGDIKQIS--VPVRVQGLE 180
            +P +      ++ +A G  H+V L  +G + TWG       GD    +   PV+V  L 
Sbjct: 670 SVPGKVINLTGMKMIAGGENHTVALRSDGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLT 729

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
               ++ G  H+LAL+ DG +WA+G N YGQLG G T  +  P+ V+ L+G  +V IAAG
Sbjct: 730 NWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG--VVAIAAG 787

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              S AL  DG V+ WG+  +G LG G   +SS  VP +V LL   D+  ++ G  H VA
Sbjct: 788 KDFSLALKSDGTVWSWGQNTYGELGNGTTTRSS--VPVQVALL--TDVKAIAAGDYHGVA 843

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           L +DG +F++G   +G LG    ++   P++  +          G+      K +A G  
Sbjct: 844 LKKDGSVFAWGYNGNGELGNSSTISQSTPVQSGVT---------GI------KGIAAGPY 888

Query: 361 HTLAI 365
           HTLA+
Sbjct: 889 HTLAL 893



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 35/240 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           A+G    GQLG G    +     VK L    V ++ AG   SLA+  DG           
Sbjct: 752 AFGYNGYGQLGDGTTSSQRTPVQVKDLT--GVVAIAAGKDFSLALKSDGTVWSWGQNTYG 809

Query: 59  ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                 T   ++P QV  L++ K + A  G +H +A+   G  +AWG N  G+ G     
Sbjct: 810 ELGNGTTTRSSVPVQVALLTDVKAIAA--GDYHGVALKKDGSVFAWGYNGNGELGNSSTI 867

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
              T          P +     I + +AAG  H++ L  +G VW+WG         G+  
Sbjct: 868 SQST----------PVQSGVTGI-KGIAAGPYHTLALKSDGTVWSWGYNGYGQLGNGNNT 916

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             SVP  + GL  +  IA G   ++A   DG L++WG N  GQLG G T   + P  V G
Sbjct: 917 SRSVPAAIPGLASIASIAAGENQSIAYGNDGILYSWGRNANGQLGNGTTVDTNVPHKVIG 976


>gi|449676845|ref|XP_002166895.2| PREDICTED: uncharacterized protein LOC100213911, partial [Hydra
           magnipapillata]
          Length = 725

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 162/331 (48%), Gaps = 54/331 (16%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G TK+ N PS V  L   K+ + A G  H +   + G+ +++G NE GQ G      D  
Sbjct: 73  GHTKSLNKPSFVKPLKPEKVRKVACGRNHTIVYSESGKLFSFGCNEDGQLG----HVDKE 128

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             +L ++I       P++ ++Q+A G  HS++L+ +G V+ WG         G+  + S+
Sbjct: 129 NELLPKEI----ESIPQMEIKQIACGTYHSIILSEDGDVYVWGNNNEGQLGLGEEVENSL 184

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ------PRSQPIPV 226
           P +++  ++V  ++ G +H   +  DG L+ +G NE G+LG   +Q      P+S  +P 
Sbjct: 185 PKKLKFKKEVVSVSCGYYHTALVTRDGFLYTFGENELGKLGLSSSQLSNTTVPQSVAMPA 244

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV----PQKVNL 282
                   + ++ G  H+ A+T  G  Y WG G  G+LG G     +K++    P+++  
Sbjct: 245 DNDE---YISVSCGARHTVAITKQGHCYAWGDGSQGQLGHG-----TKLLEVNEPKQIKK 296

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L+G+  + VSCG +H+  +T  G +F+FG G HG+LG G    +                
Sbjct: 297 LSGQKCISVSCGESHTAVVTESGKVFTFGDGRHGKLGQGEDSFS---------------- 340

Query: 343 GDGVDRRWIAKL-------VACGGRHTLAIV 366
            +  D  ++++        V+CGG HTL + 
Sbjct: 341 -NSFDPVYLSRFNYFNVVYVSCGGCHTLVLA 370



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 160/304 (52%), Gaps = 28/304 (9%)

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC 130
           + N  +V+ A G  H   V + GR Y +G N++GQ G        T  + +   V P + 
Sbjct: 35  IKNDGVVEMACGDEHSAVVTESGRLYVFGSNDWGQLG-----LGHTKSLNKPSFVKPLK- 88

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQIS--VPVRVQGLEQ--VKL 184
            P+  VR+VA G  H++V +  G ++++G  +    G + + +  +P  ++ + Q  +K 
Sbjct: 89  -PEK-VRKVACGRNHTIVYSESGKLFSFGCNEDGQLGHVDKENELLPKEIESIPQMEIKQ 146

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           IA G +H++ L EDG ++ WGNN  GQLG G+    S P  ++      +V ++ G +H+
Sbjct: 147 IACGTYHSIILSEDGDVYVWGNNNEGQLGLGEEVENSLPKKLKFKK--EVVSVSCGYYHT 204

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED-IVQVSCGGTHSVALTR 303
             +T DG +Y +G  E G+LG   +  S+  VPQ V + A  D  + VSCG  H+VA+T+
Sbjct: 205 ALVTRDGFLYTFGENELGKLGLSSSQLSNTTVPQSVAMPADNDEYISVSCGARHTVAITK 264

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            GH +++G G  G+LG+G K+         + +  P+       ++ I+  V+CG  HT 
Sbjct: 265 QGHCYAWGDGSQGQLGHGTKL---------LEVNEPKQIKKLSGQKCIS--VSCGESHTA 313

Query: 364 AIVE 367
            + E
Sbjct: 314 VVTE 317



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 173/370 (46%), Gaps = 47/370 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS + GQLG+G+ +       VK L+P KVR V  G  +++   + GK        
Sbjct: 59  LYVFGSNDWGQLGLGHTKSLNKPSFVKPLKPEKVRKVACGRNHTIVYSESGKLFSFGCNE 118

Query: 59  --------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--E 108
                    + E +P ++ ++   +I Q A G +H + + + G  Y WG N  GQ G  E
Sbjct: 119 DGQLGHVDKENELLPKEIESIPQMEIKQIACGTYHSIILSEDGDVYVWGNNNEGQLGLGE 178

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------W 162
           E E              +P++   K  V  V+ G  H+ ++TR+G ++T+G+        
Sbjct: 179 EVENS------------LPKKLKFKKEVVSVSCGYYHTALVTRDGFLYTFGENELGKLGL 226

Query: 163 PPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               +   +VP  V      ++   ++ GA H +A+ + G  +AWG+   GQLG G    
Sbjct: 227 SSSQLSNTTVPQSVAMPADNDEYISVSCGARHTVAITKQGHCYAWGDGSQGQLGHGTKLL 286

Query: 220 R-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             ++P  ++ LSG   + ++ G  H+  +T+ G+V+ +G G HG+LG G++  S+   P 
Sbjct: 287 EVNEPKQIKKLSGQKCISVSCGESHTAVVTESGKVFTFGDGRHGKLGQGEDSFSNSFDPV 346

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH-------GRLGYGRKVTTGQPME 331
            ++     ++V VSCGG H++ L    +   F  G++        +        T +P +
Sbjct: 347 YLSRFNYFNVVYVSCGGCHTLVLAVHKNKDDFVDGENSLRASMTSQKSLKEANMTLRPED 406

Query: 332 VPINIPAPRN 341
            PI   +PRN
Sbjct: 407 SPILSSSPRN 416



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 24/121 (19%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D G V+ +G+ +     F DN      +  K   +  + +V+++CG  HS  +T  G 
Sbjct: 11  IPDLGAVFTFGKSK-----FADN------IANKF-WIKNDGVVEMACGDEHSAVVTESGR 58

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++ FG  D G+LG G   +  +P  V    P               + VACG  HT+   
Sbjct: 59  LYVFGSNDWGQLGLGHTKSLNKPSFVKPLKPEK------------VRKVACGRNHTIVYS 106

Query: 367 E 367
           E
Sbjct: 107 E 107


>gi|403306428|ref|XP_003943737.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Saimiri boliviensis
            boliviensis]
          Length = 4472

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 186/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3591 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3650

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3651 AGGRLGIGGTESVSSPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3710

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3711 HGSRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 3762

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3763 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3822

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3823 CKVPTKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3880

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 3881 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 3936

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 3937 Q--GKKVNR------VACGSAHTLA---WSTSK 3958



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 160/313 (51%), Gaps = 27/313 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA G    G+ G        T  I R+
Sbjct: 2619 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGRLGLG--LSSGTVPIPRQ 2676

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PVRVQG 178
               +      K+ V    +GG H+  LT +G V++WG+      G   +++   P  ++ 
Sbjct: 2677 ITALSSYMVKKVAVH---SGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPRLIEA 2733

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G  ++ 
Sbjct: 2734 LKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQ 2793

Query: 237  IAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
            +A G     + ALTD+G V+ WG G+ G+LG G ++  +  VPQ +  L G+ + Q+ CG
Sbjct: 2794 VACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--VPQNIERLNGQGVCQIECG 2851

Query: 295  GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
               S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + I   
Sbjct: 2852 AQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKKIVH- 2899

Query: 355  VACGGRHTLAIVE 367
            VA G  H LA+ +
Sbjct: 2900 VAVGALHCLAVTD 2912



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 164/352 (46%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +   G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 142 VTQIACAEKRFLILSRSGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 201

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK I           V  +A
Sbjct: 202 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKAISAFSGKQAGKHVVHIA 246

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 247 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 306

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 307 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 366

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 367 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 424

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 425 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 464



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 131 PIQCEGLANLGVTQIACAEKRFLILSRSGRVYTQAYNS--------------------DT 170

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 171 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKAI 230

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 231 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 290

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 291 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 348

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 349 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 397

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 398 KKVID-VAAGSTHCLALTE 415



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2651 VYACGEATNGRLGLGLSSGTVPIPRQ----ITALSSYMVKKVAVHSGGRHATALTVDGKV 2706

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 2707 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 2766

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 2767 GRLG----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2811

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        +VP  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2812 VFSWGD----GDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2867

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 2868 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 2927

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2928 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 2963



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 137/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG                          GSR+    CD     
Sbjct: 3692 LSSEGEVYSWGEAEDGKLG-------------------------HGSRSP---CDR---- 3719

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3720 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 3775

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 3776 EALQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 3822

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP ++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3823 CKVPTKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3882

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3883 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 3940

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 3941 VNRVACGSAHTLA 3953



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E    + A    +    V  +  GS  S AI  +
Sbjct: 199 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKAISAFSGKQAGKHVVHIACGSTYSAAITAE 258

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 259 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 318

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 319 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 370

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 371 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 430

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 431 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 464



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3590 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3649

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3650 GAGGRLGIGGTESVSSPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3709

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G      +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3710 GHGSRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 3764



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2752 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2811

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  N+P  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2812 VFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2871

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2872 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 2923

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2924 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 2961


>gi|395541966|ref|XP_003772907.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3, partial
           [Sarcophilus harrisii]
          Length = 638

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 157/319 (49%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 26  PQAYGFISDRSIKEVACGGNHSIFLLEDGEVYTCGSNTKGQLGHEREGNKPEQIGALADQ 85

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+ +G +++W     GQ         +++P  ++
Sbjct: 86  HIV------------HVACGESHSLALSDQGQLFSWGAGSDGQLGHTTTEDSVAIPRLIK 133

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H +AL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 134 KLNQQMILQVSCGNWHCMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGIPL 193

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWGR   G+LG   +D++ +  P  V LL  + +V +SCG
Sbjct: 194 AQVAAGGAHSFALSLSGAVFGWGRNNAGQLGL--SDETDRQSPCHVKLLRTQKVVYISCG 251

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 252 EEHTAVLTKSGGVFTFGAGSFGQLGHD-------------------SMNDEVNPRRVLEL 292

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 293 MGSEVTQIACGRQHTLAFV 311



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 152/315 (48%), Gaps = 31/315 (9%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTE--------------NIPSQVNALSNTKIVQAAIGGWH 85
           ++ V  G  +S+ + +DG+  T               N P Q+ AL++  IV  A G  H
Sbjct: 37  IKEVACGGNHSIFLLEDGEVYTCGSNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 96

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LA+ DQG+ ++WG    GQ G      +D+  I R    + Q+     ++ QV+ G  H
Sbjct: 97  SLALSDQGQLFSWGAGSDGQLGHT--TTEDSVAIPRLIKKLNQQ-----MILQVSCGNWH 149

Query: 146 SVVLTREGHVWTWGQPWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQED 198
            + L  +G  +TWGQ          +    + P RV+ LE + L  +A G  H+ AL   
Sbjct: 150 CMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGIPLAQVAAGGAHSFALSLS 209

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           GA++ WG N  GQLG  D   R  P  V+ L    +V I+ G  H+  LT  G V+ +G 
Sbjct: 210 GAVFGWGRNNAGQLGLSDETDRQSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA 269

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGR 317
           G  G+L  G +  + ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+
Sbjct: 270 GSFGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQ 327

Query: 318 LGYGRKVTTGQPMEV 332
           LG G       P  V
Sbjct: 328 LGTGHTCNVKCPSPV 342



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 20/238 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HS+ L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 37  IKEVACGGNHSIFLLEDGEVYTCGSNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 96

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTD 249
           +LAL + G L++WG    GQLG   T+  S  IP  ++ L+   ++ ++ G WH  AL  
Sbjct: 97  SLALSDQGQLFSWGAGSDGQLGHTTTE-DSVAIPRLIKKLNQQMILQVSCGNWHCMALAA 155

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F 
Sbjct: 156 DGQFFTWGQNRHGQLGLG-KEFPSQASPQRVKSLEGIPLAQVAAGGAHSFALSLSGAVFG 214

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +GR + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 WGRNNAGQLGLSDETDRQSPCHVKL------------LRTQKVVYISCGEEHTAVLTK 260



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 125/291 (42%), Gaps = 45/291 (15%)

Query: 7   IIAWGSGEDGQLGI---GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----- 58
           +   GS   GQLG    GN  E+     + AL    +  V  G  +SLA+ D G+     
Sbjct: 56  VYTCGSNTKGQLGHEREGNKPEQ-----IGALADQHIVHVACGESHSLALSDQGQLFSWG 110

Query: 59  ---------TKTEN---IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    T TE+   IP  +  L+   I+Q + G WHC+A+   G+ + WG N +GQ 
Sbjct: 111 AGSDGQLGHTTTEDSVAIPRLIKKLNQQMILQVSCGNWHCMALAADGQFFTWGQNRHGQL 170

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G   E               PQR      + + QVAAGG HS  L+  G V+ WG+    
Sbjct: 171 GLGKEFPSQAS---------PQRVKSLEGIPLAQVAAGGAHSFALSLSGAVFGWGRN-NA 220

Query: 165 GDI-------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           G +       +Q    V++   ++V  I+ G  H   L + G ++ +G   +GQLG    
Sbjct: 221 GQLGLSDETDRQSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSFGQLGHDSM 280

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
                P  V  L G  +  IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 281 NDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 331



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 110/255 (43%), Gaps = 49/255 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG    E+   +  ++K L    +  V  G+ + +A+  DG+  T    
Sbjct: 106 LFSWGAGSDGQLGHTTTEDSVAIPRLIKKLNQQMILQVSCGNWHCMALAADGQFFTWGQN 165

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 166 RHGQLGLGKEFPSQASPQRVKSLEGIPLAQVAAGGAHSFALSLSGAVFGWGRNNAGQLG- 224

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQ----VAAGGTHSVVLTREGHVWTWGQPWPP 164
                D+T R           C  KL+  Q    ++ G  H+ VLT+ G V+T+G     
Sbjct: 225 ---LSDETDR--------QSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFG----A 269

Query: 165 GDIKQISV--------PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLG 213
           G   Q+          P RV  L   +V  IA G  H LA     G ++A+G    GQLG
Sbjct: 270 GSFGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 329

Query: 214 TGDTQPRSQPIPVQG 228
           TG T     P PV+G
Sbjct: 330 TGHTCNVKCPSPVKG 344



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           W  G  G  G   N +     PQ    ++   I +V+CGG HS+ L  DG +++ G    
Sbjct: 7   WSLGHPG--GISSNLQGIVTEPQAYGFISDRSIKEVACGGNHSIFLLEDGEVYTCGSNTK 64

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ R+               P   G   D+  +   VACG  H+LA+
Sbjct: 65  GQLGHEREGNK------------PEQIGALADQHIVH--VACGESHSLAL 100



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +  +R+  C VK L   KV  +  G  ++  +   G   
Sbjct: 206 LSLSGAVFGWGRNNAGQLGLSDETDRQSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 265

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 266 TFGAGSFGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329


>gi|195490361|ref|XP_002093107.1| GE21143 [Drosophila yakuba]
 gi|194179208|gb|EDW92819.1| GE21143 [Drosophila yakuba]
          Length = 1057

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 173/376 (46%), Gaps = 68/376 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           MAS   +  WGS   GQLG+G  E+ + +                               
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQIL------------------------------- 29

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               PSQ+    +T + Q A G  H L +   G+ YA G N++ Q G E   K       
Sbjct: 30  ---TPSQIPWTPDTAVQQVACGHRHTLFLTANGKVYACGSNDHSQLGHELPTK------- 79

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVR 175
            R ++IP+      +V Q++ G  HS+ L+  G V +WG     Q     D + + +P  
Sbjct: 80  -RPLLIPE--LQDYVVIQISCGSRHSLALSEWGQVLSWGDNDCGQLGHATDKEIVQLPKV 136

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG---DTQPRSQPIPVQGLS 230
           V+ L  + V  IA G  H+LAL   G L++WG+N YGQLG     D    + P+ +  L 
Sbjct: 137 VRQLVSKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNSPKDLTHCNYPLRLTTLL 196

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+ L  IA GG HS  ++  G V+GWGR   G+LG   ND++++  P ++  L    +  
Sbjct: 197 GIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGL--NDEANRAYPTQLKTLRTLGVRF 254

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V+CG   SV LT +G +F+ G G +G+LG+G       P  V          G  + +  
Sbjct: 255 VACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMV------MELMGSTITQ-- 306

Query: 351 IAKLVACGGRHTLAIV 366
               VACG RHTLA+V
Sbjct: 307 ----VACGNRHTLALV 318



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P ++       + QV+CG  H++ LT +G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTANGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             DH +LG+        P + P+ IP  ++        ++   ++CG RH+LA+ EW
Sbjct: 66  SNDHSQLGHEL------PTKRPLLIPELQD--------YVVIQISCGSRHSLALSEW 108



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 99/249 (39%), Gaps = 35/249 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG   ++E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 111 VLSWGDNDCGQLGHATDKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSN 170

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 171 IYGQLGVNSPKDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 230

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G      D+  R     +    +    L VR VA G   SV LT EG V+T G       
Sbjct: 231 G----LNDEANRAYPTQL----KTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQL 282

Query: 163 PPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQP 219
             G      +P  V  L    +  +A G  H LAL    G ++A+G    GQLGT  T+ 
Sbjct: 283 GHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTRSTKS 342

Query: 220 RSQPIPVQG 228
              P  V G
Sbjct: 343 LMLPQVVIG 351



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 213 ISKSGAVFGWGRNNCGQLGLNDEANRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 272

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR YA+G    
Sbjct: 273 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSS 332

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              +++RQ+ +GG  S+V T
Sbjct: 333 GQLGTR-----STKSLMLPQVVIGPWVSPSGSALLQSNDAKVSVVIRQIFSGGDQSIVTT 387

Query: 151 REGHVWTWGQPWPPGDIK 168
                  + +  PP D +
Sbjct: 388 T-----LFMEKVPPEDFR 400


>gi|383865452|ref|XP_003708187.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Megachile
            rotundata]
          Length = 4755

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 185/401 (46%), Gaps = 65/401 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +   + ++L   +   +  G +   A+  DGK       
Sbjct: 3897 AIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVYATGYG 3956

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  + + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 3957 AVGRLGIGGTDSVMMPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 4016

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                     G  L  D        PKLI       +  VA GG HS  +T  G ++TWG+
Sbjct: 4017 H--------GNRLSYD-------RPKLIEELLGTEIVDVACGGHHSAAITSAGWLYTWGK 4061

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  V+ L+  K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 4062 GRYGRLGHGDSEDQLTPKLVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKL 4121

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P+ ++ L+GL ++ +  G   S ALT  G +Y WG+G++ RLG G +D  
Sbjct: 4122 GRGGSDGCKVPMKIESLAGLGVIKVECGSQFSVALTRSGSIYTWGKGDYHRLGHGTDDHV 4181

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G      +P  V
Sbjct: 4182 RR--PRKVAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEGQLGDGTTCALQRPRLV 4239

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                      G  + R      VACG  HTLA   W T ++
Sbjct: 4240 HA------LQGKKITR------VACGSAHTLA---WSTMKA 4265



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 159/321 (49%), Gaps = 46/321 (14%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P    +LS  K V  A G      V  +G+ YA G    G+ G       D G      
Sbjct: 2932 LPVYSESLSKLKPVHIAGGSKTLFVVSQEGKLYACGEGTNGRLG-----LGDDG------ 2980

Query: 124  IVIPQRCAPK-------LIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
                  C PK        ++++VA  +GG H++ LT++G V++WG+        G+   +
Sbjct: 2981 ----NACEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGRVFSWGEGEDGKLGHGNCSSL 3036

Query: 171  SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              P  ++ L+  +++ +A G+ H+ A+   G L+ WG  EYG+LG GDT  + +P  VQ 
Sbjct: 3037 DKPRLIESLKSKRIRDVACGSGHSAAITSSGELYTWGLGEYGRLGHGDTNTQLKPKLVQS 3096

Query: 229  LSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            L G  ++ +A G     + ALT DG VY WG G+ G+LG G +D      P  V+ L G 
Sbjct: 3097 LVGQRVIQVACGSRDAQTMALTADGSVYSWGDGDFGKLGRGGSDGC--YTPLLVDRLNGL 3154

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
             +VQ+ CG   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+
Sbjct: 3155 GVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGL 3203

Query: 347  DRRWIAKLVACGGRHTLAIVE 367
              + +   VA G  H LA+ +
Sbjct: 3204 RGKKVIH-VAVGALHCLAVTD 3223



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 158/331 (47%), Gaps = 37/331 (11%)

Query: 51   LAICDDGKTKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
            L I    KT    + + V+ L S+ +IVQ        +        Y WG N+       
Sbjct: 2866 LQIIGKRKTYENQLATSVSFLASDWEIVQEQASSQRGVETPQHSAVYVWGLND------- 2918

Query: 110  PERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
               KD  G +    I +P       KL    +A G     V+++EG ++  G+       
Sbjct: 2919 ---KDQLGGLKGSKIKLPVYSESLSKLKPVHIAGGSKTLFVVSQEGKLYACGEGTNGRLG 2975

Query: 164  PGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  +  L Q  +K +AV  G  H LAL +DG +++WG  E G+LG G+   
Sbjct: 2976 LGDDGNACEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGRVFSWGEGEDGKLGHGNCSS 3035

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              +P  ++ L    + D+A G  HS A+T  GE+Y WG GE+GRLG GD +  +++ P+ 
Sbjct: 3036 LDKPRLIESLKSKRIRDVACGSGHSAAITSSGELYTWGLGEYGRLGHGDTN--TQLKPKL 3093

Query: 280  VNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            V  L G+ ++QV+CG     ++ALT DG ++S+G GD G+LG G       P+ V     
Sbjct: 3094 VQSLVGQRVIQVACGSRDAQTMALTADGSVYSWGDGDFGKLGRGGSDGCYTPLLV----- 3148

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
              R  G GV +      + CG + +LA+ ++
Sbjct: 3149 -DRLNGLGVVQ------IECGAQFSLALTKY 3172



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 156/328 (47%), Gaps = 52/328 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT----- 59
            + A G G +G+LG+G++        +  L  Y ++ V   +G +++LA+  DG+      
Sbjct: 2963 LYACGEGTNGRLGLGDDGNACEPKPIPFLSQYVIKKVAVHSGGKHALALTQDGRVFSWGE 3022

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        + + P  + +L + +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3023 GEDGKLGHGNCSSLDKPRLIESLKSKRIRDVACGSGHSAAITSSGELYTWGLGEYGRLGH 3082

Query: 109  EPERKDDTGRILRRDIV---IPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWP 163
                  DT   L+  +V   + QR      V QVA G     ++ LT +G V++WG    
Sbjct: 3083 -----GDTNTQLKPKLVQSLVGQR------VIQVACGSRDAQTMALTADGSVYSWGD--- 3128

Query: 164  PGDIKQI--------SVPV---RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  ++          P+   R+ GL  V+ I  GA  +LAL + G +W WG  +Y +L
Sbjct: 3129 -GDFGKLGRGGSDGCYTPLLVDRLNGLGVVQ-IECGAQFSLALTKYGEVWTWGKGDYFRL 3186

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G+     +P  V+GL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G    +
Sbjct: 3187 GHGNDHHVRKPTLVEGLRGKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGSTIVN 3246

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             K  P  V+ L    + +VSCG +HS+A
Sbjct: 3247 KK--PSLVHELDDARVNRVSCGSSHSIA 3272



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 35/234 (14%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           AWG  ++G  G  P   D                  +L ++Q+       ++L+  G+V+
Sbjct: 440 AWGSVKFGGTGSSPFYCDAIA---------------ELGIKQLCCTERALMILSTSGNVY 484

Query: 157 T--WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFH-----NLALQEDGALWAWGNNEY 209
              +G         +   P RV G    K +A+ A H      LAL ED ++++WGN + 
Sbjct: 485 MMYYGS--------ETQYPQRVYGFSD-KFVAMIASHPDGKHYLALTEDSSVYSWGNGDG 535

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           G+LG GD     +P  ++ L    +  IA G  +S AL+ +GE+Y WGRG +GRLG G++
Sbjct: 536 GRLGHGDRTWYEEPKLIESLVDKNITFIACGSTYSAALSSNGELYTWGRGNYGRLGHGNS 595

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYG 321
           D    MVP  V+ L G  IV V+CG   + ++ +T  G +FS+G GD+G+LG G
Sbjct: 596 DDV--MVPTLVSALNGHMIVYVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRG 647



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 138/312 (44%), Gaps = 62/312 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 3998 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------L 4021

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            + + P  +  L  T+IV  A GG H  A+   G  Y WG   YG+ G        T +++
Sbjct: 4022 SYDRPKLIEELLGTEIVDVACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSEDQLTPKLV 4081

Query: 121  R--RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI-------- 170
               +D         K+I     +G   ++ +T + +VW+WG     GD  ++        
Sbjct: 4082 EALQDY--------KVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGC 4129

Query: 171  SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             VP++++ L  + +I V  G+  ++AL   G+++ WG  +Y +LG G      +P  V  
Sbjct: 4130 KVPMKIESLAGLGVIKVECGSQFSVALTRSGSIYTWGKGDYHRLGHGTDDHVRRPRKVAA 4189

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L G  ++ IA G  H  A +D GEV+ WG  + G+L  GD    +   P+ V+ L G+ I
Sbjct: 4190 LQGKKIISIATGSLHCVACSDKGEVFTWGDNDEGQL--GDGTTCALQRPRLVHALQGKKI 4247

Query: 289  VQVSCGGTHSVA 300
             +V+CG  H++A
Sbjct: 4248 TRVACGSAHTLA 4259



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 153/352 (43%), Gaps = 51/352 (14%)

Query: 7   IIAWGSGEDGQLG--------IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
           ++AWGS + G  G        I     ++  C  +AL       +++ S N   +    +
Sbjct: 438 VLAWGSVKFGGTGSSPFYCDAIAELGIKQLCCTERAL------MILSTSGNVYMMYYGSE 491

Query: 59  TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG-------EE 109
           T+    P +V   S+  +   A    G H LA+ +    Y+WG  + G+ G       EE
Sbjct: 492 TQ---YPQRVYGFSDKFVAMIASHPDGKHYLALTEDSSVYSWGNGDGGRLGHGDRTWYEE 548

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
           P+  +    ++ ++I              +A G T+S  L+  G ++TWG+        G
Sbjct: 549 PKLIES---LVDKNITF------------IACGSTYSAALSSNGELYTWGRGNYGRLGHG 593

Query: 166 DIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           +   + VP  V  L    ++ V    G    L +   G +++WG+ +YG+LG G      
Sbjct: 594 NSDDVMVPTLVSALNGHMIVYVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGCNGSK 653

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V  L  + +  +  GG  S ALT  GEVY WG+GE  RLG G+ +      P+ + 
Sbjct: 654 TPKIVDKLLDINVAKVYCGGQFSAALTAYGEVYTWGKGEAYRLGHGNEEHVR--YPKAIE 711

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            L  + + ++  G  H +ALT D  ++ +GR D+G++         +P   P
Sbjct: 712 ALKTKKVKELCVGSLHVLALTEDQLVYGWGRNDYGQIDPALGTIVSEPTLCP 763



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 123/270 (45%), Gaps = 32/270 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +   +S+ +WG+G+ G+LG G+    E   ++++L    +  +  GS  S A+  +G+  
Sbjct: 521 LTEDSSVYSWGNGDGGRLGHGDRTWYEEPKLIESLVDKNITFIACGSTYSAALSSNGELY 580

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T                  +P+ V+AL+   IV  A G      L V   G  ++WG  +
Sbjct: 581 TWGRGNYGRLGHGNSDDVMVPTLVSALNGHMIVYVACGSGDSQTLCVTASGIVFSWGDGD 640

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YG+ G        T +I+ + + I         V +V  GG  S  LT  G V+TWG+  
Sbjct: 641 YGKLGRGGCNGSKTPKIVDKLLDIN--------VAKVYCGGQFSAALTAYGEVYTWGKGE 692

Query: 161 --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G+ + +  P  ++ L+  +VK + VG+ H LAL ED  ++ WG N+YGQ+    
Sbjct: 693 AYRLGHGNEEHVRYPKAIEALKTKKVKELCVGSLHVLALTEDQLVYGWGRNDYGQIDPAL 752

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
               S+P     LSG  ++ +  G   S A
Sbjct: 753 GTIVSEPTLCPTLSGKNVIGLVCGPTQSFA 782



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P+  + LS L  V +  G     A+T DG+VY  G 
Sbjct: 3896 GAIYGWGHNHRGQLGGLEGAKVKLPVLCESLSALRPVQLTGGEQTLFAVTADGKVYATGY 3955

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S M+P  +  +    +  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 3956 GAVGRLGIGGTD--SVMMPTLLESIQHVFVKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 4013

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G +++  +P  +   +       + VD       VACGG H+ AI
Sbjct: 4014 KLGHGNRLSYDRPKLIEELL-----GTEIVD-------VACGGHHSAAI 4050



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 50/257 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G+   +    +V++L   +V  V  GSR++          
Sbjct: 3063 ITSSGELYTWGLGEYGRLGHGDTNTQLKPKLVQSLVGQRVIQVACGSRDA---------- 3112

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      +A+   G  Y+WG  ++G+ G        T  ++
Sbjct: 3113 ------------------------QTMALTADGSVYSWGDGDFGKLGRGGSDGCYTPLLV 3148

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V Q+  G   S+ LT+ G VWTWG+        G+   +  P  V
Sbjct: 3149 DR--------LNGLGVVQIECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV 3200

Query: 177  QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL   K+I  AVGA H LA+ + G ++AWG+N++GQ G G T    +P  V  L    +
Sbjct: 3201 EGLRGKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGSTIVNKKPSLVHELDDARV 3260

Query: 235  VDIAAGGWHSTA--LTD 249
              ++ G  HS A  LTD
Sbjct: 3261 NRVSCGSSHSIAWVLTD 3277



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 34/252 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  + +L +  I   A G  +  A+   G  Y WG   YG+ G               D+
Sbjct: 549 PKLIESLVDKNITFIACGSTYSAALSSNGELYTWGRGNYGRLGHGNSD----------DV 598

Query: 125 VIPQRCAP----KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
           ++P   +      ++     +G + ++ +T  G V++WG     GD  ++          
Sbjct: 599 MVPTLVSALNGHMIVYVACGSGDSQTLCVTASGIVFSWGD----GDYGKLGRGGCNGSKT 654

Query: 173 PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P  V  L  + +  V  G   + AL   G ++ WG  E  +LG G+ +    P  ++ L 
Sbjct: 655 PKIVDKLLDINVAKVYCGGQFSAALTAYGEVYTWGKGEAYRLGHGNEEHVRYPKAIEALK 714

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL--GFGDNDKSSKMVPQKVNLLAGEDI 288
              + ++  G  H  ALT+D  VYGWGR ++G++    G       + P     L+G+++
Sbjct: 715 TKKVKELCVGSLHVLALTEDQLVYGWGRNDYGQIDPALGTIVSEPTLCPT----LSGKNV 770

Query: 289 VQVSCGGTHSVA 300
           + + CG T S A
Sbjct: 771 IGLVCGPTQSFA 782


>gi|379718300|ref|YP_005310431.1| hypothetical protein PM3016_306 [Paenibacillus mucilaginosus 3016]
 gi|378566972|gb|AFC27282.1| hypothetical protein PM3016_306 [Paenibacillus mucilaginosus 3016]
          Length = 1239

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 174/362 (48%), Gaps = 49/362 (13%)

Query: 10   WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
            WG    GQLG G +        V  L   K+  +  G  +++A+  DG            
Sbjct: 728  WGYNGHGQLGTGTSNSTSVPGKVINLTGMKM--IAGGENHTVALRSDGTLHTWGYNGYGQ 785

Query: 58   ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 T T   P QV+ L+N   V A  G  H LA+   G  +A+G N YGQ G+     
Sbjct: 786  LGDDSTTTRYSPVQVSTLTNWTAVSA--GENHSLALKSDGTVWAFGYNGYGQLGDGTTSS 843

Query: 114  DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
              T          P +      V  +AAG   S+ L  +G VW+WGQ        G   +
Sbjct: 844  QRT----------PVQVKDLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGTTTR 893

Query: 170  ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             SVPV+V  L  VK IA G +H +AL++DG+++AWG N  G+LG   T   SQ  PVQ  
Sbjct: 894  SSVPVQVALLTDVKAIAAGDYHGVALKKDGSVFAWGYNGNGELGNSST--ISQSTPVQ-- 949

Query: 230  SGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            SG+T +  IAAG +H+ AL  DG V+ WG   +G+LG G+N  +S+ VP  +  LA   I
Sbjct: 950  SGVTGIKGIAAGPYHTLALKSDGTVWSWGYNGYGQLGNGNN--TSRSVPAAIPGLA--SI 1005

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV------PINIPAPRNA 342
              ++ G   S+A   DG ++S+GR  +G+LG G  V T  P +V      P +  AP   
Sbjct: 1006 ASIAAGENQSIAYGNDGILYSWGRNANGQLGNGTTVDTNVPHKVIGPNINPADTTAPAAV 1065

Query: 343  GD 344
             D
Sbjct: 1066 SD 1067



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 147/305 (48%), Gaps = 44/305 (14%)

Query: 74  TKIVQAAIG---------GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           T +  AA+G         G H + +   G  + WG N +GQ G        TG       
Sbjct: 695 TAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLG--------TGT--SNST 744

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--WPPGDIKQIS--VPVRVQGLE 180
            +P +      ++ +A G  H+V L  +G + TWG       GD    +   PV+V  L 
Sbjct: 745 SVPGKVINLTGMKMIAGGENHTVALRSDGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLT 804

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
               ++ G  H+LAL+ DG +WA+G N YGQLG G T  +  P+ V+ L+G  +V IAAG
Sbjct: 805 NWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG--VVAIAAG 862

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              S AL  DG V+ WG+  +G LG G   +SS  VP +V LL   D+  ++ G  H VA
Sbjct: 863 KDFSLALKSDGTVWSWGQNTYGELGNGTTTRSS--VPVQVALL--TDVKAIAAGDYHGVA 918

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           L +DG +F++G   +G LG    ++   P++  +          G+      K +A G  
Sbjct: 919 LKKDGSVFAWGYNGNGELGNSSTISQSTPVQSGVT---------GI------KGIAAGPY 963

Query: 361 HTLAI 365
           HTLA+
Sbjct: 964 HTLAL 968



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 35/240 (14%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
            A+G    GQLG G    +     VK L    V ++ AG   SLA+  DG           
Sbjct: 827  AFGYNGYGQLGDGTTSSQRTPVQVKDLT--GVVAIAAGKDFSLALKSDGTVWSWGQNTYG 884

Query: 59   ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                  T   ++P QV  L++ K + A  G +H +A+   G  +AWG N  G+ G     
Sbjct: 885  ELGNGTTTRSSVPVQVALLTDVKAIAA--GDYHGVALKKDGSVFAWGYNGNGELGNSSTI 942

Query: 113  KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
               T          P +     I + +AAG  H++ L  +G VW+WG         G+  
Sbjct: 943  SQST----------PVQSGVTGI-KGIAAGPYHTLALKSDGTVWSWGYNGYGQLGNGNNT 991

Query: 169  QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              SVP  + GL  +  IA G   ++A   DG L++WG N  GQLG G T   + P  V G
Sbjct: 992  SRSVPAAIPGLASIASIAAGENQSIAYGNDGILYSWGRNANGQLGNGTTVDTNVPHKVIG 1051


>gi|37747571|gb|AAH60033.1| Herc4 protein [Mus musculus]
          Length = 1057

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 169/356 (47%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASYGQLGLGGIDEE------IVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  A G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G   +  ++  R+ R       +    + + QVA G  HS+ L++   V+ WGQ    
Sbjct: 115 QLG--LQGSEECIRVPRN-----IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYG 167

Query: 165 G-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D ++ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG  D 
Sbjct: 168 QLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDE 227

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P
Sbjct: 228 NDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINP 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +KV  L G  + Q +CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 286 RKVFELMGSIVTQAACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G + ++                                  
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGIDCQK---------------------------------- 177

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 178 -QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V   A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQAACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P++ +    + +  V CG  H+V +  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P +V             +D + I   VACG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEQVV-----------ALDAQNIVA-VACGEAHTLAL 99


>gi|348550629|ref|XP_003461134.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cavia porcellus]
          Length = 4725

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3844 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPIQLIGGEQTLFAVTADGKLYATGYG 3903

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3904 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3963

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3964 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 4015

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4016 HSDSEDQLKPKLVEVLQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4075

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 4076 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4133

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 4134 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 4189

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 4190 Q--GKKVNR------VACGSAHTLA---WSTSK 4211



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D +  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTLPLEE--PKVISAFSGKQGGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L ++ +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVIKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPTALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 151/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTLPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     QG + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQGGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           ++V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 IKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2961 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 3010

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG V+  G+    G +        + +P ++  L    VK +AV  G  H  AL  DG +
Sbjct: 3011 EGKVYACGEA-TNGRLGLGLSSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS ALT  GE+Y WG GE+
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 3130 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 3187

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 3188 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 3223



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 137/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3945 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3972

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3973 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4028

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
             +L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4029 EVLQGHRVVDIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4075

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4076 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4135

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4136 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4193

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4194 VNRVACGSAHTLA 4206



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 137/259 (52%), Gaps = 23/259 (8%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-LSSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFS 309
            + CG   S+ALT+ G +++
Sbjct: 3211 IECGAQFSLALTKSGVVWT 3229



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 35/279 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK---- 60
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 2960 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGE 3019

Query: 61   -------------TENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                         T  IP Q+ ALS+  + + A+  GG H  A+   G+ ++WG  + G+
Sbjct: 3020 ATNGRLGLGLSSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGK 3079

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  LT  G ++TWG      
Sbjct: 3080 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAALTSSGELYTWGLGEYGR 3131

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 3132 LGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 3191

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +  + P  ++ L+G  +  I  G   S ALT  G V+ W
Sbjct: 3192 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTLPLEEPKVISAFSGKQGGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVIKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPTALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 56/190 (29%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3843 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPIQLIGGEQTLFAVTADGKLYATGY 3902

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3903 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3962

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+    
Sbjct: 3963 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE 4020

Query: 325  TTGQPMEVPI 334
               +P  V +
Sbjct: 4021 DQLKPKLVEV 4030



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 26/185 (14%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
            + +WG G+DG+LG  +    +   +++AL+  ++R +  GS +S A+   G+        
Sbjct: 3069 VFSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGE 3128

Query: 59   --------TKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                      T+  P  V  L   +++Q A G      LA+ D+G  ++WG  ++G+ G 
Sbjct: 3129 YGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG- 3187

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
               R    G  + ++I   +R   + +  Q+  G   S+ LT+ G VWTW   +    + 
Sbjct: 3188 ---RGGSEGCNIPQNI---ERLNGQGVC-QIECGAQFSLALTKSGVVWTWYVSFLLSPVH 3240

Query: 169  QISVP 173
             + VP
Sbjct: 3241 LLGVP 3245


>gi|329663335|ref|NP_001193010.1| E3 ubiquitin-protein ligase HERC2 [Bos taurus]
 gi|296490789|tpg|DAA32902.1| TPA: hect domain and RLD 3-like [Bos taurus]
          Length = 4837

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 57/396 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3956 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGYG 4015

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4016 AGGRLGVGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4075

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  R+   LR   V+            VAAGG HS  +T  G ++TWG+    
Sbjct: 4076 HGNRSPCDRPRVIESLRGTEVV-----------DVAAGGAHSACVTAAGDLYTWGKGRYG 4124

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G 
Sbjct: 4125 RLGHSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 4184

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  
Sbjct: 4185 SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR-- 4242

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P++V  L G+ ++ ++ G  H V  + DG ++++G  D G+LG G    T   ++ P  +
Sbjct: 4243 PRQVQGLQGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLV 4298

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
             A +  G  V+R      VACG  HTLA   W T +
Sbjct: 4299 AALQ--GKKVNR------VACGSAHTLA---WSTSK 4323



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3259

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3260 IVH-VAVGALHCLAVTD 3275



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSVALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPSALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   SVALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 137/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4057 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4084

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L  T++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4085 ----PRVIESLRGTEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4140

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4141 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4187

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4188 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4247

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    ++DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4248 GLQGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4305

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4306 VNRVACGSAHTLA 4318



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   SV LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSVALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPSALPGLDTKHIVGIACGPAQSFA 776



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3955 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGY 4014

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4015 GAGGRLGVGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4074

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4075 GHGNRSPCDR--PRVIESLRGTEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4129



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|149689920|ref|XP_001503636.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Equus caballus]
          Length = 1057

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 184/397 (46%), Gaps = 60/397 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAI----- 53
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ +     
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVRDVGCGLRHTVFVLHDGT 54

Query: 54  -----CDD----GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                C+D    G  K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLLGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGIDYKKQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYFPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341

Query: 333 -----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P N   P +     +  +  K +  GG  + A
Sbjct: 342 KGNWFPYNGQCPTDIDS--EEYFCVKRIFSGGDQSFA 376



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 158/310 (50%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V   G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRKSDFFINKKVRDVGCGLRHTVFVLHDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ +  P  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYFPNLLKSLRTQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +A
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------YK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYFPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|149689922|ref|XP_001503631.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Equus caballus]
          Length = 1049

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 184/397 (46%), Gaps = 60/397 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAI----- 53
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ +     
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVRDVGCGLRHTVFVLHDGT 54

Query: 54  -----CDD----GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                C+D    G  K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLLGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGIDYKKQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYFPNLLKSLRTQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341

Query: 333 -----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P N   P +     +  +  K +  GG  + A
Sbjct: 342 KGNWFPYNGQCPTDIDS--EEYFCVKRIFSGGDQSFA 376



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 158/310 (50%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P + +   N K+     G  H + V   G  Y  G N+ GQ G E  RK    +++  D 
Sbjct: 25  PRKSDFFINKKVRDVGCGLRHTVFVLHDGTVYTCGCNDLGQLGHEKSRKKPE-QVVALD- 82

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
                 A  ++   V+ G  H++ L  +G V+ WG     Q    G  + I VP  ++ L
Sbjct: 83  ------AQNIVA--VSCGEAHTLALNDKGQVYAWGLDSDGQLGLLGSEECIRVPRNIKSL 134

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             ++++  A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + 
Sbjct: 135 SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQ 194

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS  LT  G ++GWGR + G+LG   ND++ +  P  +  L  + IV + CG  
Sbjct: 195 VAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYFPNLLKSLRTQKIVYICCGED 252

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+ ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +A
Sbjct: 253 HTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIA 300

Query: 357 CGGRHTLAIV 366
           CG +HT A V
Sbjct: 301 CGRQHTSAFV 310



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGID-----------------------------------YK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYFPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|442319627|ref|YP_007359648.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441487269|gb|AGC43964.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 1096

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/255 (37%), Positives = 132/255 (51%), Gaps = 24/255 (9%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H L +   G  ++WGGN YGQ G    R++           +P R      +  + AG  
Sbjct: 58  HSLVLKADGTVWSWGGNNYGQLGTGSTRQNP----------MPARVWRLFSITAIGAGEL 107

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
           HS+ L  +G VW+WG         G +   SVP  V GL  V  IA G  H++ L+ DG 
Sbjct: 108 HSLALKSDGTVWSWGANTNGQLGDGTLISRSVPAPVPGLTNVVAIAAGFSHSMVLKADGT 167

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +WAWG N  GQLG G    R  P+ V GL+G+   DIAAG  HS ALT DG ++ WG   
Sbjct: 168 VWAWGLNAAGQLGDGTPTRRLTPVQVLGLTGVK--DIAAGNVHSLALTADGRLWTWGGNV 225

Query: 261 HGRLGFGD--NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            G+LG GD     ++  +P          +V +S GG+HS+ L  DG ++S+G+ D G+L
Sbjct: 226 DGQLGTGDLVGRSTAAALPGMTG------VVALSGGGSHSLILKMDGSVWSWGKNDAGQL 279

Query: 319 GYGRKVTTGQPMEVP 333
           G G  V+T  P +VP
Sbjct: 280 GLGSVVSTPTPTQVP 294



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 168/330 (50%), Gaps = 40/330 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+ +WG  + GQLG+G+         V  L   ++ +V  G ++S+A+  DG        
Sbjct: 267 SVWSWGKNDAGQLGLGSVVSTPTPTQVPGLT--EMVAVTGGGQHSVALRVDGTVWAWGSN 324

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+T+ + P QV  L+  K V AA GG H +AV   G  +AWG N  GQ G+ 
Sbjct: 325 ARAQLGDGTQTQRLSPCQVTGLTQVKGV-AAGGGLHSVAVKGNGEVWAWGSNSEGQVGD- 382

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVR-QVAAGGTHSVVLTREGHVWTWG----QPWPP 164
                  G  L + +    R    L+ R  V+AGG H++ L  +G  W WG         
Sbjct: 383 -------GTYLMKLVPTTARV---LVERADVSAGGGHTLALKPDGTAWGWGLNAQSQLGD 432

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G      +PV+V  L +V  ++ G +H+LAL+EDG +W WG N +G +G G    RSQP+
Sbjct: 433 GTTTARPLPVQVLNLTRVAAVSAGTYHSLALKEDGTVWGWGANYWGAIGDGTALNRSQPV 492

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V G   L  + +A+G +HS AL+ DG V+ WG    G+LG G     ++  P +V  L 
Sbjct: 493 KVSGT--LVAMTVASGNFHSLALSVDGSVWAWGDNSLGQLGDG-TVTPTRNAPFRVPNL- 548

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            E +V ++ GG HS+AL  DG ++ +GR D
Sbjct: 549 -EGVVSLAAGGEHSLALKADGTVWVWGRQD 577



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 173/348 (49%), Gaps = 41/348 (11%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            S+ + G+   GQLG G    R     V  L   + R++  G+ + LA+  DG+       
Sbjct: 768  SVQSTGANASGQLGDGTLFPRAEPVPVIGLS--ECRAIAGGATHGLALKTDGRVLSWGAN 825

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     T     P+ V  L+   ++  A+G  H LA+   G   AWG N  GQ G+ 
Sbjct: 826  AEGELGDGTTVARRAPAVVGPLAG--VLSIAVGARHSLALLGDGSVQAWGSNIQGQLGD- 882

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
                   G  + R  V+P R      V  +AAG   S+ L  +G VW WG     Q    
Sbjct: 883  -------GTTVSR--VLPVRVQGLTGVAAIAAGDGFSLALKHDGTVWAWGGNTLGQLGDN 933

Query: 165  GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
              ++ + VPVR Q L  V  +A G  H+LAL+ DG LWAWG+N YG+LG G    +  P+
Sbjct: 934  TTLRSL-VPVRTQALTGVTAVAAGRNHSLALKGDGTLWAWGSNTYGELGDGTQARKLAPV 992

Query: 225  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
             V  L+G++ +D  AG  HS A+T  G+V+GWGR + G++G G    + +++P +V  L 
Sbjct: 993  QVTSLTGVSALD--AGDHHSLAVTSGGKVWGWGRNQFGQVGKGVK-SNWQLLPAQVPGL- 1048

Query: 285  GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                V V+ GG HS+AL  D  ++++G GD G+LG G       P++V
Sbjct: 1049 -TSAVAVAGGGEHSLALLSDRSVWAWGHGDMGQLGTGMSNLRLSPVQV 1095



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 153/312 (49%), Gaps = 40/312 (12%)

Query: 42  SVVAGSRNSLAICDDG----------------KTKTENIPSQVNALSNTKIVQAAIGGWH 85
           SV+AG  +SL +  DG                 T+   +P++V  L +   + A  G  H
Sbjct: 51  SVLAGRHHSLVLKADGTVWSWGGNNYGQLGTGSTRQNPMPARVWRLFSITAIGA--GELH 108

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGT 144
            LA+   G  ++WG N  GQ G+        G ++ R +  P    P L  V  +AAG +
Sbjct: 109 SLALKSDGTVWSWGANTNGQLGD--------GTLISRSVPAP---VPGLTNVVAIAAGFS 157

Query: 145 HSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
           HS+VL  +G VW WG         G   +   PV+V GL  VK IA G  H+LAL  DG 
Sbjct: 158 HSMVLKADGTVWAWGLNAAGQLGDGTPTRRLTPVQVLGLTGVKDIAAGNVHSLALTADGR 217

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           LW WG N  GQLGTGD   RS    + G++G  +V ++ GG HS  L  DG V+ WG+ +
Sbjct: 218 LWTWGGNVDGQLGTGDLVGRSTAAALPGMTG--VVALSGGGSHSLILKMDGSVWSWGKND 275

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+LG G    S    P    +    ++V V+ GG HSVAL  DG ++++G     +LG 
Sbjct: 276 AGQLGLG----SVVSTPTPTQVPGLTEMVAVTGGGQHSVALRVDGTVWAWGSNARAQLGD 331

Query: 321 GRKVTTGQPMEV 332
           G +     P +V
Sbjct: 332 GTQTQRLSPCQV 343



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 169/355 (47%), Gaps = 43/355 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ +WG+  +GQLG G    R     V  L    V ++ AG  +S+ +  DG   
Sbjct: 112 LKSDGTVWSWGANTNGQLGDGTLISRSVPAPVPGLT--NVVAIAAGFSHSMVLKADGTVW 169

Query: 59  -------------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T T  + P QV  L+  K + A  G  H LA+   GR + WGGN  G
Sbjct: 170 AWGLNAAGQLGDGTPTRRLTPVQVLGLTGVKDIAA--GNVHSLALTADGRLWTWGGNVDG 227

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           Q G        TG ++ R         P +  V  ++ GG+HS++L  +G VW+WG+   
Sbjct: 228 QLG--------TGDLVGRSTAA---ALPGMTGVVALSGGGSHSLILKMDGSVWSWGKNDA 276

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G +     P +V GL ++  +  G  H++AL+ DG +WAWG+N   QLG G    
Sbjct: 277 GQLGLGSVVSTPTPTQVPGLTEMVAVTGGGQHSVALRVDGTVWAWGSNARAQLGDGTQTQ 336

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R  P  V GL+ +  V  A GG HS A+  +GEV+ WG    G++  GD     K+VP  
Sbjct: 337 RLSPCQVTGLTQVKGV-AAGGGLHSVAVKGNGEVWAWGSNSEGQV--GDGTYLMKLVPTT 393

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             +L   +   VS GG H++AL  DG  + +G     +LG G   TT +P+ V +
Sbjct: 394 ARVLV--ERADVSAGGGHTLALKPDGTAWGWGLNAQSQLGDG--TTTARPLPVQV 444



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 174/381 (45%), Gaps = 55/381 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ +WG    GQLG G+  +      V  L  + + ++ AG  +SLA+            
Sbjct: 67  TVWSWGGNNYGQLGTGSTRQNPMPARVWRL--FSITAIGAGELHSLALKSDGTVWSWGAN 124

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE- 108
                 DG   + ++P+ V  L+N  +V  A G  H + +   G  +AWG N  GQ G+ 
Sbjct: 125 TNGQLGDGTLISRSVPAPVPGLTN--VVAIAAGFSHSMVLKADGTVWAWGLNAAGQLGDG 182

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPP 164
            P R+           + P +      V+ +AAG  HS+ LT +G +WTWG         
Sbjct: 183 TPTRR-----------LTPVQVLGLTGVKDIAAGNVHSLALTADGRLWTWGGNVDGQLGT 231

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           GD+   S    + G+  V  ++ G  H+L L+ DG++W+WG N+ GQLG G       P 
Sbjct: 232 GDLVGRSTAAALPGMTGVVALSGGGSHSLILKMDGSVWSWGKNDAGQLGLGSVVSTPTPT 291

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL+   +V +  GG HS AL  DG V+ W  G + R   GD  ++ ++ P +V  L 
Sbjct: 292 QVPGLT--EMVAVTGGGQHSVALRVDGTVWAW--GSNARAQLGDGTQTQRLSPCQVTGLT 347

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
               V  + GG HSVA+  +G ++++G    G++G G  +    P    + +        
Sbjct: 348 QVKGV-AAGGGLHSVAVKGNGEVWAWGSNSEGQVGDGTYLMKLVPTTARVLVERAD---- 402

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
                     V+ GG HTLA+
Sbjct: 403 ----------VSAGGGHTLAL 413



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 172/379 (45%), Gaps = 51/379 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
           ++ AWG    GQLG G    R  +  V+ L    V+ + AG+ +SLA+  DG+  T   N
Sbjct: 167 TVWAWGLNAAGQLGDGTPTRR--LTPVQVLGLTGVKDIAAGNVHSLALTADGRLWTWGGN 224

Query: 64  IPSQVN-----------ALSN-TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
           +  Q+            AL   T +V  + GG H L +   G  ++WG N+ GQ G    
Sbjct: 225 VDGQLGTGDLVGRSTAAALPGMTGVVALSGGGSHSLILKMDGSVWSWGKNDAGQLGLGSV 284

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
               T          P +      +  V  GG HSV L  +G VW WG         G  
Sbjct: 285 VSTPT----------PTQVPGLTEMVAVTGGGQHSVALRVDGTVWAWGSNARAQLGDGTQ 334

Query: 168 KQISVPVRVQGLEQVKLIAVGA-FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            Q   P +V GL QVK +A G   H++A++ +G +WAWG+N  GQ+G G    +  P   
Sbjct: 335 TQRLSPCQVTGLTQVKGVAAGGGLHSVAVKGNGEVWAWGSNSEGQVGDGTYLMKLVPTTA 394

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L  +   D++AGG H+ AL  DG  +GWG     +LG    D ++   P  V +L   
Sbjct: 395 RVL--VERADVSAGGGHTLALKPDGTAWGWGLNAQSQLG----DGTTTARPLPVQVLNLT 448

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            +  VS G  HS+AL  DG ++ +G    G +G G  +   QP++V   +          
Sbjct: 449 RVAAVSAGTYHSLALKEDGTVWGWGANYWGAIGDGTALNRSQPVKVSGTL---------- 498

Query: 347 DRRWIAKLVACGGRHTLAI 365
               +A  VA G  H+LA+
Sbjct: 499 ----VAMTVASGNFHSLAL 513



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 155/336 (46%), Gaps = 43/336 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           AWG G + Q  +G+         V+ L   +V +V AG+ +SLA+ +DG           
Sbjct: 419 AWGWGLNAQSQLGDGTTTARPLPVQVLNLTRVAAVSAGTYHSLALKEDGTVWGWGANYWG 478

Query: 60  ----KTENIPSQVNALSNTKI-VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
                T    SQ   +S T + +  A G +H LA+   G  +AWG N  GQ G+      
Sbjct: 479 AIGDGTALNRSQPVKVSGTLVAMTVASGNFHSLALSVDGSVWAWGDNSLGQLGD------ 532

Query: 115 DTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                     V P R AP  +     V  +AAGG HS+ L  +G VW WG+     D + 
Sbjct: 533 --------GTVTPTRNAPFRVPNLEGVVSLAAGGEHSLALKADGTVWVWGRQDTCADPEN 584

Query: 170 IS----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           +     VP +VQGL     +  G  H++ L+ DG LWAWG N  GQL  G    R  P  
Sbjct: 585 VGRVLRVPEQVQGLTDAVAVRAGRCHSVVLRADGTLWAWGRNAEGQLADGTFTDRMTPAR 644

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+G  ++  + G   + AL  DG  + WG    G+LG G +   ++  P +V  L  
Sbjct: 645 VDGLTG--VISFSVGSEQTLALKADGTAWAWGPNAQGQLGGGLSVPRTR--PTQVPTL-- 698

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            D+  V+ G  H++ L  D  ++++G    G++G G
Sbjct: 699 TDVRTVAMGAVHALVLKDDLTLWAWGSNAEGQVGDG 734



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 169/378 (44%), Gaps = 56/378 (14%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------- 59
           WG   DGQLG G+   R     +  +    V ++  G  +SL +  DG            
Sbjct: 221 WGGNVDGQLGTGDLVGRSTAAALPGMT--GVVALSGGGSHSLILKMDGSVWSWGKNDAGQ 278

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                  +   P+QV  L  T++V    GG H +A+   G  +AWG N   Q G+  + +
Sbjct: 279 LGLGSVVSTPTPTQVPGL--TEMVAVTGGGQHSVALRVDGTVWAWGSNARAQLGDGTQTQ 336

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGG-THSVVLTREGHVWTWGQPWP----PGDIK 168
                      + P +      V+ VAAGG  HSV +   G VW WG         G   
Sbjct: 337 R----------LSPCQVTGLTQVKGVAAGGGLHSVAVKGNGEVWAWGSNSEGQVGDGTYL 386

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              VP   + L +   ++ G  H LAL+ DG  W WG N   QLG G T  R  P+PVQ 
Sbjct: 387 MKLVPTTARVLVERADVSAGGGHTLALKPDGTAWGWGLNAQSQLGDGTTTAR--PLPVQV 444

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+   +  ++AG +HS AL +DG V+GWG    G +G G     S+ V     L+A    
Sbjct: 445 LNLTRVAAVSAGTYHSLALKEDGTVWGWGANYWGAIGDGTALNRSQPVKVSGTLVA---- 500

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIPAPRNAGDGVD 347
           + V+ G  HS+AL+ DG ++++G    G+LG G    T   P  VP N+       +GV 
Sbjct: 501 MTVASGNFHSLALSVDGSVWAWGDNSLGQLGDGTVTPTRNAPFRVP-NL-------EGVV 552

Query: 348 RRWIAKLVACGGRHTLAI 365
                  +A GG H+LA+
Sbjct: 553 S------LAAGGEHSLAL 564



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 106/200 (53%), Gaps = 10/200 (5%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            V AG  HS+VL  +G VW+WG         G  +Q  +P RV  L  +  I  G  H+L
Sbjct: 51  SVLAGRHHSLVLKADGTVWSWGGNNYGQLGTGSTRQNPMPARVWRLFSITAIGAGELHSL 110

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+ DG +W+WG N  GQLG G    RS P PV GL+   +V IAAG  HS  L  DG V
Sbjct: 111 ALKSDGTVWSWGANTNGQLGDGTLISRSVPAPVPGLT--NVVAIAAGFSHSMVLKADGTV 168

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG    G+L  GD   + ++ P +V  L G  +  ++ G  HS+ALT DG ++++G  
Sbjct: 169 WAWGLNAAGQL--GDGTPTRRLTPVQVLGLTG--VKDIAAGNVHSLALTADGRLWTWGGN 224

Query: 314 DHGRLGYGRKVTTGQPMEVP 333
             G+LG G  V       +P
Sbjct: 225 VDGQLGTGDLVGRSTAAALP 244



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 167/414 (40%), Gaps = 93/414 (22%)

Query: 6   SIIAWGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           S+ AWG    GQLG G     R     V  LE   V S+ AG  +SLA+  DG       
Sbjct: 518 SVWAWGDNSLGQLGDGTVTPTRNAPFRVPNLE--GVVSLAAGGEHSLALKADGTVWVWGR 575

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      +   +P QV  L++   V+A  G  H + +   G  +AWG N  GQ  +
Sbjct: 576 QDTCADPENVGRVLRVPEQVQGLTDAVAVRA--GRCHSVVLRADGTLWAWGRNAEGQLAD 633

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
                         D + P R      V   + G   ++ L  +G  W WG P   G + 
Sbjct: 634 GT----------FTDRMTPARVDGLTGVISFSVGSEQTLALKADGTAWAWG-PNAQGQLG 682

Query: 169 Q-ISVP----VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN---------------- 207
             +SVP     +V  L  V+ +A+GA H L L++D  LWAWG+N                
Sbjct: 683 GGLSVPRTRPTQVPTLTDVRTVAMGAVHALVLKDDLTLWAWGSNAEGQVGDGALDWQAAP 742

Query: 208 ---------------EY------------------GQLGTGDTQPRSQPIPVQGLSGLTL 234
                          +Y                  GQLG G   PR++P+PV GLS    
Sbjct: 743 VRSGLAASRGLAAATQYSLGIALDGSVQSTGANASGQLGDGTLFPRAEPVPVIGLS--EC 800

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             IA G  H  AL  DG V  WG    G L  GD    ++  P  V  LAG  ++ ++ G
Sbjct: 801 RAIAGGATHGLALKTDGRVLSWGANAEGEL--GDGTTVARRAPAVVGPLAG--VLSIAVG 856

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVD 347
             HS+AL  DG + ++G    G+LG G  V+   P+ V  +   A   AGDG  
Sbjct: 857 ARHSLALLGDGSVQAWGSNIQGQLGDGTTVSRVLPVRVQGLTGVAAIAAGDGFS 910



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 6/156 (3%)

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           +G  +   +  G  H+L L+ DG +W+WG N YGQLGTG T  R  P+P +     ++  
Sbjct: 44  EGTSRQGSVLAGRHHSLVLKADGTVWSWGGNNYGQLGTGST--RQNPMPARVWRLFSITA 101

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I AG  HS AL  DG V+ WG   +G+L  GD    S+ VP  V  L   ++V ++ G +
Sbjct: 102 IGAGELHSLALKSDGTVWSWGANTNGQL--GDGTLISRSVPAPVPGL--TNVVAIAAGFS 157

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           HS+ L  DG ++++G    G+LG G       P++V
Sbjct: 158 HSMVLKADGTVWAWGLNAAGQLGDGTPTRRLTPVQV 193


>gi|55832181|gb|AAV66579.1| HECT and RCC1 containing protein 4 isoform 3 [Homo sapiens]
          Length = 979

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|337744685|ref|YP_004638847.1| hypothetical protein KNP414_00352 [Paenibacillus mucilaginosus
            KNP414]
 gi|336295874|gb|AEI38977.1| hypothetical protein KNP414_00352 [Paenibacillus mucilaginosus
            KNP414]
          Length = 1224

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 174/362 (48%), Gaps = 49/362 (13%)

Query: 10   WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
            WG    GQLG G +        V  L   K+  +  G  +++A+  DG            
Sbjct: 713  WGYNGHGQLGTGTSNSTSVPGKVINLTGMKM--IAGGENHTVALRSDGTLHTWGYNGYGQ 770

Query: 58   ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 T T   P QV+ L+N   V A  G  H LA+   G  +A+G N YGQ G+     
Sbjct: 771  LGDDSTTTRYSPVQVSTLTNWTAVSA--GENHSLALKSDGTVWAFGYNGYGQLGDGTTSS 828

Query: 114  DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
              T          P +      V  +AAG   S+ L  +G VW+WGQ        G   +
Sbjct: 829  QRT----------PVQVKDLTGVVAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGTTTR 878

Query: 170  ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             SVPV+V  L  VK IA G +H +AL++DG+++AWG N  G+LG   T   SQ  PVQ  
Sbjct: 879  SSVPVQVALLTDVKAIAAGDYHGVALKKDGSVFAWGYNGNGELGNSST--ISQSTPVQ-- 934

Query: 230  SGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            SG+T +  IAAG +H+ AL  DG V+ WG   +G+LG G+N  +S+ VP  +  LA   +
Sbjct: 935  SGVTGIKGIAAGPYHTLALKSDGTVWSWGYNGYGQLGSGNN--TSRSVPAAIPGLA--SM 990

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV------PINIPAPRNA 342
              ++ G   S+A   DG ++S+GR  +G+LG G  V T  P +V      P +  AP   
Sbjct: 991  ASIAAGENQSIAYGNDGILYSWGRNANGQLGNGTTVDTNVPHKVIGPNINPADTTAPAAV 1050

Query: 343  GD 344
             D
Sbjct: 1051 SD 1052



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 147/305 (48%), Gaps = 44/305 (14%)

Query: 74  TKIVQAAIG---------GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           T +  AA+G         G H + +   G  + WG N +GQ G        TG       
Sbjct: 680 TAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLG--------TGT--SNST 729

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--WPPGDIKQIS--VPVRVQGLE 180
            +P +      ++ +A G  H+V L  +G + TWG       GD    +   PV+V  L 
Sbjct: 730 SVPGKVINLTGMKMIAGGENHTVALRSDGTLHTWGYNGYGQLGDDSTTTRYSPVQVSTLT 789

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
               ++ G  H+LAL+ DG +WA+G N YGQLG G T  +  P+ V+ L+G  +V IAAG
Sbjct: 790 NWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTG--VVAIAAG 847

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              S AL  DG V+ WG+  +G LG G   +SS  VP +V LL   D+  ++ G  H VA
Sbjct: 848 KDFSLALKSDGTVWSWGQNTYGELGNGTTTRSS--VPVQVALL--TDVKAIAAGDYHGVA 903

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           L +DG +F++G   +G LG    ++   P++  +          G+      K +A G  
Sbjct: 904 LKKDGSVFAWGYNGNGELGNSSTISQSTPVQSGVT---------GI------KGIAAGPY 948

Query: 361 HTLAI 365
           HTLA+
Sbjct: 949 HTLAL 953



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 35/240 (14%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
            A+G    GQLG G    +     VK L    V ++ AG   SLA+  DG           
Sbjct: 812  AFGYNGYGQLGDGTTSSQRTPVQVKDLT--GVVAIAAGKDFSLALKSDGTVWSWGQNTYG 869

Query: 59   ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                  T   ++P QV  L++ K + A  G +H +A+   G  +AWG N  G+ G     
Sbjct: 870  ELGNGTTTRSSVPVQVALLTDVKAIAA--GDYHGVALKKDGSVFAWGYNGNGELGNSSTI 927

Query: 113  KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
               T          P +     I + +AAG  H++ L  +G VW+WG         G+  
Sbjct: 928  SQST----------PVQSGVTGI-KGIAAGPYHTLALKSDGTVWSWGYNGYGQLGSGNNT 976

Query: 169  QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              SVP  + GL  +  IA G   ++A   DG L++WG N  GQLG G T   + P  V G
Sbjct: 977  SRSVPAAIPGLASMASIAAGENQSIAYGNDGILYSWGRNANGQLGNGTTVDTNVPHKVIG 1036


>gi|444516740|gb|ELV11273.1| E3 ubiquitin-protein ligase HERC2 [Tupaia chinensis]
          Length = 3151

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/393 (29%), Positives = 186/393 (47%), Gaps = 51/393 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 2261 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGYG 2320

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 2321 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 2380

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 2381 HGSRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 2432

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 2433 HSDSEDQLKPKLVEALQGHRVVGIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 2492

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 2493 CKVPMKIDSLTGLGVVRVECGSQFSVALTKAGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 2550

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+  + ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A 
Sbjct: 2551 VQGLQGKKAIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 2606

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 2607 Q--GKKVNR------VACGSAHTLA---WSTSK 2628



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 165/320 (51%), Gaps = 41/320 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI-LR 121
             +PS    LS   +VQ A G     AV  +G+ YA G    G+ G        +G + L 
Sbjct: 1286 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGRLG----LGLSSGTVPLP 1341

Query: 122  RDIVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------S 171
            R +          +V++VA  +GG H+  LT +G V++WG+    GD  ++         
Sbjct: 1342 RQVT----ALSSYVVKKVAVHSGGRHATALTVDGKVFSWGE----GDDGKLGHFSRMNCD 1393

Query: 172  VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             P  ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GDT  + +P  V+ L
Sbjct: 1394 KPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDTTTQLKPKMVKVL 1453

Query: 230  SGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
             G  +V +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ 
Sbjct: 1454 LGHRVVQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQG 1511

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
            + Q+ CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+ 
Sbjct: 1512 VCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLR 1560

Query: 348  RRWIAKLVACGGRHTLAIVE 367
             + I   VA G  H LA+ +
Sbjct: 1561 GKKIVH-VAVGALHCLAVTD 1579



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 155/338 (45%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    V AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 1318 VYACGEATNGRLGLGLSSGTVPLPRQ----VTALSSYVVKKVAVHSGGRHATALTVDGKV 1373

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 1374 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 1433

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G       DT   L+          PK++       V QVA G     ++ LT EG 
Sbjct: 1434 GRLGH-----GDTTTQLK----------PKMVKVLLGHRVVQVACGSRDAQTLALTDEGL 1478

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 1479 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 1534

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 1535 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 1594

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 1595 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 1630



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 137/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG                          GSR+    CD     
Sbjct: 2362 LSSEGEVYSWGEAEDGKLG-------------------------HGSRSP---CDR---- 2389

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 2390 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 2445

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 2446 EALQGHRVVGIAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 2492

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 2493 CKVPMKIDSLTGLGVVRVECGSQFSVALTKAGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 2552

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G   + IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 2553 GLQGKKAIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 2610

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 2611 VNRVACGSAHTLA 2623



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 2260 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGY 2319

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 2320 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 2379

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G      +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 2380 GHGSRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 2434



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+   +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 1419 LTSSGELYTWGLGEYGRLGHGDTTTQLKPKMVKVLLGHRVVQVACGSRDAQTLALTDEGL 1478

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 1479 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 1538

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 1539 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 1590

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 1591 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 1628



 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            GR+   + D ++  VP     L+  ++VQV+ G     A+T +G +++ G   +GRLG G
Sbjct: 1273 GRIRAEEEDLAAIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGRLGLG 1332

Query: 322  RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC--GGRHTLAI 365
              +++G        +P PR         ++ K VA   GGRH  A+
Sbjct: 1333 --LSSG-------TVPLPRQV--TALSSYVVKKVAVHSGGRHATAL 1367


>gi|426220634|ref|XP_004004519.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Ovis aries]
          Length = 4836

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 57/396 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3955 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGYG 4014

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4015 AGGRLGVGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4074

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  R+   LR   V+            VAAGG HS  +T  G ++TWG+    
Sbjct: 4075 HGNRSPCDRPRVIESLRGTEVV-----------DVAAGGAHSACVTAAGDLYTWGKGRYG 4123

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G 
Sbjct: 4124 RLGHSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 4183

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  
Sbjct: 4184 SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR-- 4241

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P++V  L G+ ++ ++ G  H V  + DG ++++G  D G+LG G    T   ++ P  +
Sbjct: 4242 PRQVQGLQGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLV 4297

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
             A +  G  V+R      VACG  HTLA   W T +
Sbjct: 4298 AALQ--GKKVNR------VACGSAHTLA---WSTSK 4322



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3259

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3260 IVH-VAVGALHCLAVTD 3275



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPSALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3014 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 137/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4056 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4083

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L  T++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4084 ----PRVIESLRGTEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4139

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4140 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4186

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4187 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4246

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    ++DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4247 GLQGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4304

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4305 VNRVACGSAHTLA 4317



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPSALPGLDTKHIVGIACGPAQSFA 776



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3954 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGY 4013

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4014 GAGGRLGVGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4073

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4074 GHGNRSPCDR--PRVIESLRGTEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4128



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324


>gi|356512860|ref|XP_003525133.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 437

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 175/356 (49%), Gaps = 42/356 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + +WG GEDGQLG G+ ++R +   + AL+   +  V  G+ +++A  + G+  
Sbjct: 29  LLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLSALDGQDIICVTCGADHTMARSESGRDV 88

Query: 61  TE-----------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                               IP  + AL    I Q A G  HCLAV    +  +WG N+ 
Sbjct: 89  YSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQIACGDSHCLAVTMDSQVLSWGRNQN 148

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           G+ G               D ++PQ+     ++ ++ VAAG  HSV +T++G+++ WG  
Sbjct: 149 GELGLGTAE----------DSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWG-- 196

Query: 162 WPP------GDIKQISVP--VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     +P  V V G +++ ++A G  H + +   G L+  G  +YGQLG
Sbjct: 197 WGRYGNLGLGDRNDRLLPEKVTVDG-DKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLG 255

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            GD +    P  VQ LS   +  ++ G  HS ALT  G++ GWG  + G++G G+N    
Sbjct: 256 HGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNFDCC 315

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
              P +VN    + +  +SCG  H++A+T   +++S+GRG +G+LG G  +    P
Sbjct: 316 S--PMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRNVP 369



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 130/251 (51%), Gaps = 22/251 (8%)

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
            D V+ +  AP   V  V+AG +HSV L     V +WG+        GD      P ++ 
Sbjct: 2   EDEVMSEVAAPPRRVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKLS 61

Query: 178 GLEQVKLIAV--GAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            L+   +I V  GA H +A  E G  +++WG  ++G+LG GD      P P++ L GL +
Sbjct: 62  ALDGQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMI 121

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             IA G  H  A+T D +V  WGR ++G LG G  + S  ++PQK+ +     I  V+ G
Sbjct: 122 QQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDS--LLPQKIQIFEEIPIKMVAAG 179

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             HSVA+T+DG+++ +G G +G LG G +     P +V ++       GD +       +
Sbjct: 180 AEHSVAITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVD-------GDKM------AM 226

Query: 355 VACGGRHTLAI 365
           VACG RHT+ +
Sbjct: 227 VACGWRHTICV 237



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 20/202 (9%)

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           + +++ P R     +V L++ GA H++AL     + +WG  E GQLG GDT  R  P  +
Sbjct: 6   MSEVAAPPR-----RVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGHGDTDDRLFPTKL 60

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
             L G  ++ +  G  H+ A ++ G +VY WG G+ GRLG GD+  S  ++P  +  L G
Sbjct: 61  SALDGQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDH--SDLLIPHPIKALQG 118

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             I Q++CG +H +A+T D  + S+GR  +G LG G    +  P ++ I    P      
Sbjct: 119 LMIQQIACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIP------ 172

Query: 346 VDRRWIAKLVACGGRHTLAIVE 367
                  K+VA G  H++AI +
Sbjct: 173 ------IKMVAAGAEHSVAITK 188



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 80/351 (22%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK- 133
           +++  + G  H +A+       +WG  E GQ G       DT      D + P + +   
Sbjct: 15  RVLLVSAGASHSVALLSGNVVCSWGRGEDGQLGH-----GDT-----DDRLFPTKLSALD 64

Query: 134 -LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLI 185
              +  V  G  H++  +  G   + W WG       GD   + +P  ++ L+   ++ I
Sbjct: 65  GQDIICVTCGADHTMARSESGRDVYSWGWGDFGRLGHGDHSDLLIPHPIKALQGLMIQQI 124

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H LA+  D  + +WG N+ G+LG G  +    P  +Q    + +  +AAG  HS 
Sbjct: 125 ACGDSHCLAVTMDSQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSV 184

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDN------------------------------------ 269
           A+T DG +YGWG G +G LG GD                                     
Sbjct: 185 AITKDGNLYGWGWGRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLY 244

Query: 270 -------------DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
                        D    +VP+KV  L+ + I QVS G  HS+ALT  G +  +G    G
Sbjct: 245 TNGWGKYGQLGHGDFEDHLVPRKVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFG 304

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           ++G G       PM+V  N P  +            ++++CG RHT+A+ E
Sbjct: 305 QIGVGNNFDCCSPMQV--NFPHDQK----------VQMISCGWRHTIAVTE 343



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 33/249 (13%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           + +++WG  ++G+LG+G  E+      ++  E   ++ V AG+ +S+AI  DG       
Sbjct: 138 SQVLSWGRNQNGELGLGTAEDSLLPQKIQIFEEIPIKMVAAGAEHSVAITKDGNLYGWGW 197

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     + + +  +   +   K+   A G  H + V   G  Y  G  +YGQ G  
Sbjct: 198 GRYGNLGLGDRNDRLLPEKVTVDGDKMAMVACGWRHTICVSSSGGLYTNGWGKYGQLG-- 255

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
               D    ++ R +   Q  + K I  QV+ G  HS+ LT  G +  WG  W       
Sbjct: 256 --HGDFEDHLVPRKV---QALSDKFI-SQVSGGWRHSMALTSSGQLLGWG--WNKFGQIG 307

Query: 165 -GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G+      P++V     ++V++I+ G  H +A+ E   +++WG    GQLG G+T  R+
Sbjct: 308 VGNNFDCCSPMQVNFPHDQKVQMISCGWRHTIAVTERENVYSWGRGANGQLGNGETIDRN 367

Query: 222 QPIPVQGLS 230
            P  ++  S
Sbjct: 368 VPTIIEAFS 376


>gi|440911989|gb|ELR61602.1| E3 ubiquitin-protein ligase HERC2 [Bos grunniens mutus]
          Length = 4835

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 188/396 (47%), Gaps = 57/396 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3954 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGYG 4013

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4014 AGGRLGVGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4073

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  R+   LR   V+            VAAGG HS  +T  G ++TWG+    
Sbjct: 4074 HGNRSPCDRPRVIESLRGTEVV-----------DVAAGGAHSACVTAAGDLYTWGKGRYG 4122

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 D +    P  V+ L+  +++ V    G    L L +D  +W+WG+ +YG+LG G 
Sbjct: 4123 RLGHSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 4182

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  
Sbjct: 4183 SDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR-- 4240

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P++V  L G+ ++ ++ G  H V  + DG ++++G  D G+LG G    T   ++ P  +
Sbjct: 4241 PRQVQGLQGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLV 4296

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
             A +  G  V+R      VACG  HTLA   W T +
Sbjct: 4297 AALQ--GKKVNR------VACGSAHTLA---WSTSK 4321



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2980 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3030

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3031 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3090

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3091 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3150

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3151 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3208

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3209 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3257

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3258 IVH-VAVGALHCLAVTD 3273



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 454 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSVALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPSALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   SVALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 661 VKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 709

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 710 KKVID-VAAGSTHCLALTE 727



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3012 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3067

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3068 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3127

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3128 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3172

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3173 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3228

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3229 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 3288

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3289 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3324



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 137/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 4055 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4082

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L  T++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4083 ----PRVIESLRGTEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4138

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4139 EALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4185

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4186 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4245

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    ++DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4246 GLQGKKVIAIATGSLHCVCCSEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4303

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4304 VNRVACGSAHTLA 4316



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   SV LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSVALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPSALPGLDTKHIVGIACGPAQSFA 776



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3953 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGY 4012

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 4013 GAGGRLGVGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 4072

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 4073 GHGNRSPCDR--PRVIESLRGTEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 4127



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3113 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3172

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3173 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3232

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3233 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 3284

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3285 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3322


>gi|158286478|ref|XP_001688080.1| AGAP006994-PB [Anopheles gambiae str. PEST]
 gi|157020487|gb|EDO64729.1| AGAP006994-PB [Anopheles gambiae str. PEST]
          Length = 1060

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 171/381 (44%), Gaps = 82/381 (21%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           +I  WG+   G+LG+G  EE + +                                  +P
Sbjct: 2   AIYCWGNTAHGELGLGGIEEEQVM----------------------------------VP 27

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE----PERKDDTGRILR 121
            +++     ++V+   G  H L +  +G+ YA G N++GQ G +    P ++    R  R
Sbjct: 28  RKMDWSQADEVVRVECGTSHTLFLTKEGKMYACGNNDHGQLGHDLDTLPNKRPRMSRFKR 87

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------------QPWPPGD 166
              +         I+  ++ G  HS+ LT  G V++WG               QP P   
Sbjct: 88  LTSL------ENYIITCISCGTAHSLALTNWGQVFSWGSNAVGQLGHDAENGRQPTPRM- 140

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIP 225
                  ++  G + V  IA G +H LAL  +G L+AWG+N YGQLG G T  +   P  
Sbjct: 141 -------IKAIGAKHVVQIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTSEKVPMPTL 193

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           +Q L+G+ +  IA GG HS A++  G ++GWG+   G+LG   ND +S+  P ++  L  
Sbjct: 194 IQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGL--NDLNSRCYPTQLRTLRS 251

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             +  +SCG   SV LT +G +F+ G G  G+LG+G             N   PR   + 
Sbjct: 252 LGVRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGHGSCS----------NEIVPRKVFEL 301

Query: 346 VDRRWIAKLVACGGRHTLAIV 366
           +  +     +ACG RHTLA V
Sbjct: 302 MGSKITQ--IACGRRHTLAFV 320



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 16/121 (13%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG   HG LG G  ++   MVP+K++    +++V+V CG +H++ LT++G +++ G 
Sbjct: 3   IYCWGNTAHGELGLGGIEEEQVMVPRKMDWSQADEVVRVECGTSHTLFLTKEGKMYACGN 62

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR-----RWIAKLVACGGRHTLAIVE 367
            DHG+LG+               +P  R       R      +I   ++CG  H+LA+  
Sbjct: 63  NDHGQLGHDLD-----------TLPNKRPRMSRFKRLTSLENYIITCISCGTAHSLALTN 111

Query: 368 W 368
           W
Sbjct: 112 W 112



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 103/247 (41%), Gaps = 33/247 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + +WGS   GQLG      R+    ++KA+    V  + +G  + LA+ ++G+       
Sbjct: 115 VFSWGSNAVGQLGHDAENGRQPTPRMIKAIGAKHVVQIASGQYHCLALTNNGELYAWGSN 174

Query: 59  --------TKTENIP--SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   T +E +P  + + +L+   I   A GG H  AV   G  + WG N +GQ G 
Sbjct: 175 SYGQLGIGTTSEKVPMPTLIQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG- 233

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                D   R     +    R    L VR ++ G   SV LT EG V+T G         
Sbjct: 234 ---LNDLNSRCYPTQL----RTLRSLGVRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGH 286

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRS 221
           G      VP +V  L   ++  IA G  H LA     G ++ +G    GQLG G     S
Sbjct: 287 GSCSNEIVPRKVFELMGSKITQIACGRRHTLAFVPSRGKIYGFGLGGVGQLGIGMVGNHS 346

Query: 222 QPIPVQG 228
            P  V+G
Sbjct: 347 TPQIVRG 353



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 22/165 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +I  WG    GQLG+ +   R +   ++ L    VR +  G   S+ + ++G   T    
Sbjct: 220 AIFGWGKNTFGQLGLNDLNSRCYPTQLRTLRSLGVRYISCGDDFSVFLTNEGGVFTCGAG 279

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E +P +V  L  +KI Q A G  H LA V  +G+ Y +G    GQ G 
Sbjct: 280 TFGQLGHGSCSNEIVPRKVFELMGSKITQIACGRRHTLAFVPSRGKIYGFGLGGVGQLGI 339

Query: 109 EPERKDDTGRILR-----RDIVIPQRCAPKLIVRQVAAGGTHSVV 148
                  T +I+R      D         ++IV ++ +GG    V
Sbjct: 340 GMVGNHSTPQIVRGPWFKTDFKSSDCDETQIIVNRIFSGGDQCFV 384


>gi|426364914|ref|XP_004049536.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 3
           [Gorilla gorilla gorilla]
          Length = 979

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        +R V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRIRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|194748527|ref|XP_001956696.1| GF24453 [Drosophila ananassae]
 gi|190623978|gb|EDV39502.1| GF24453 [Drosophila ananassae]
          Length = 1058

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 170/376 (45%), Gaps = 68/376 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           M + T +  WG+   GQLG+G  E+ + +                               
Sbjct: 1   MTAGTELYCWGNTSHGQLGLGGIEDEQILT------------------------------ 30

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               PSQV    ++ I Q A G  H L +   GR YA G N++ Q G +   K       
Sbjct: 31  ----PSQVPWTPDSAIKQVACGHRHTLFLTSSGRVYACGSNDHSQLGHDLPTK------- 79

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-------PWPPGDIKQISVP 173
            R ++IP+      +V Q+A G  HS+ L+  G V +WG             DI Q+   
Sbjct: 80  -RPLLIPELL--DYVVVQIACGSRHSMALSEWGQVLSWGDNDCGQLGQATDQDIVQLPKI 136

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG---DTQPRSQPIPVQGLS 230
           VR    + V  IA G  H+LAL   G L++WG+N YGQLG     +    +QP+ +  L 
Sbjct: 137 VRQLVSKTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGVNTPKEVTHSNQPVRLTTLL 196

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+ +  IA GG HS  ++    V+GWGR   G+LG   ND++S+  P ++  L    +  
Sbjct: 197 GIPVAAIACGGNHSFIISKSSAVFGWGRNNCGQLGL--NDETSRSYPTQLKTLRTLGVRF 254

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V+CG   SV LT +G +F+ G G +G+LG+G       P  V          G  + +  
Sbjct: 255 VACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFGANEMLPRMV------MELMGSTITQ-- 306

Query: 351 IAKLVACGGRHTLAIV 366
               VACG RHTLA+V
Sbjct: 307 ----VACGNRHTLALV 318



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 14/122 (11%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T   E+Y WG   HG+LG G  +    + P +V       I QV+CG  H++ LT  G 
Sbjct: 1   MTAGTELYCWGNTSHGQLGLGGIEDEQILTPSQVPWTPDSAIKQVACGHRHTLFLTSSGR 60

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +++ G  DH +LG+        P + P+ IP   +        ++   +ACG RH++A+ 
Sbjct: 61  VYACGSNDHSQLGHDL------PTKRPLLIPELLD--------YVVVQIACGSRHSMALS 106

Query: 367 EW 368
           EW
Sbjct: 107 EW 108


>gi|63025188|ref|NP_071362.1| probable E3 ubiquitin-protein ligase HERC4 isoform a [Homo sapiens]
 gi|74707832|sp|Q5GLZ8.1|HERC4_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC4; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           4
 gi|37900475|gb|AAO65480.1| HECT and RCC1 containing protein 4 isoform 1 [Homo sapiens]
 gi|119574649|gb|EAW54264.1| hect domain and RLD 4, isoform CRA_d [Homo sapiens]
          Length = 1057

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|442629373|ref|NP_001261249.1| CG9153, isoform C [Drosophila melanogaster]
 gi|323301230|gb|ADX35957.1| LD13353p [Drosophila melanogaster]
 gi|440215116|gb|AGB93944.1| CG9153, isoform C [Drosophila melanogaster]
          Length = 1062

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 174/352 (49%), Gaps = 44/352 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           MAS   +  WGS   GQLG+G  E+ +   +  +  P+     V+ V  G R++L +   
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQ--ILTPSQIPWTPDTAVQQVACGHRHTLFLTAT 58

Query: 57  GKTKT----------ENIPSQ---------VNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           GK              ++P++         +  L +  I+Q   G  H LA+ D G+  +
Sbjct: 59  GKVYACGSNDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQVLS 118

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG N+ GQ G   +++     I++   V+ Q     ++  Q+A G  HS+ LT  G +++
Sbjct: 119 WGDNDCGQLGHATDKE-----IVQLPKVVRQLVTKTVV--QIACGNNHSLALTSCGELYS 171

Query: 158 WGQPW-------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNE 208
           WG           P D+   + P+R+  L  + L  IA G  H+  + + GA++ WG N 
Sbjct: 172 WGSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNN 231

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            GQLG  D   RS P  ++ L  L +  +A G   S  LT++G V+  G G +G+LG G 
Sbjct: 232 CGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGF 291

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
           +  S++M+P+ V  L G  I QV+CG  H++AL    G +++FG G  G+LG
Sbjct: 292 S--SNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLG 341



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 41/287 (14%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREG 153
           Y WG   +GQ G         G I    I+ P +    P   V+QVA G  H++ LT  G
Sbjct: 8   YCWGSTSHGQLG--------LGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATG 59

Query: 154 HVWTWGQPWPPGDIKQI--SVPVRVQGLEQVKLI-----------AVGAFHNLALQEDGA 200
            V+  G      D  Q+   +P +   +    LI             G+ H+LAL + G 
Sbjct: 60  KVYACGS----NDYSQLGHDLPTKRPRMSPFLLIPELQDYVIIQICCGSRHSLALSDWGQ 115

Query: 201 LWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           + +WG+N+ GQLG   D +    P  V+ L   T+V IA G  HS ALT  GE+Y WG  
Sbjct: 116 VLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSN 175

Query: 260 EHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            +G+LG    ND +    P ++  L G  +  ++CGG HS  +++ G +F +GR + G+L
Sbjct: 176 IYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 235

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G   +     P +    +   R  G         + VACG   ++ +
Sbjct: 236 GLNDETNRSYPTQ----LKTLRTLG--------VRFVACGDEFSVFL 270



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P ++       + QV+CG  H++ LT  G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPSQIPWTPDTAVQQVACGHRHTLFLTATGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+   + T +P   P + IP  ++        ++   + CG RH+LA+ +W
Sbjct: 66  SNDYSQLGH--DLPTKRPRMSPFLLIPELQD--------YVIIQICCGSRHSLALSDW 113



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 102/253 (40%), Gaps = 43/253 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG   ++E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 116 VLSWGDNDCGQLGHATDKEIVQLPKVVRQLVTKTVVQIACGNNHSLALTSCGELYSWGSN 175

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 176 IYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 235

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
           G      D+T R     +    +    L VR VA G   SV LT EG V+T G     G 
Sbjct: 236 G----LNDETNRSYPTQL----KTLRTLGVRFVACGDEFSVFLTNEGGVFTCG----AGA 283

Query: 167 IKQI--------SVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTG 215
             Q+         +P  V  L    +  +A G  H LAL    G ++A+G    GQLGT 
Sbjct: 284 YGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSSGQLGTR 343

Query: 216 DTQPRSQPIPVQG 228
            T+    P  V G
Sbjct: 344 STKSLMLPQVVIG 356



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 218 ISKSGAVFGWGRNNCGQLGLNDETNRSYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 277

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR YA+G    
Sbjct: 278 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLALVPSRGRVYAFGLGSS 337

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              L++RQ+ +GG  S+V T
Sbjct: 338 GQLGTR-----STKSLMLPQVVIGPWVSPSGSALLQSNDSQVSLVIRQIFSGGDQSIVTT 392

Query: 151 REGHVWTWGQPWPPGDIK 168
                  +    PP D +
Sbjct: 393 T-----LFVDKVPPEDFR 405


>gi|37620181|ref|NP_056416.2| probable E3 ubiquitin-protein ligase HERC4 isoform b [Homo sapiens]
 gi|24659293|gb|AAH39600.1| Hect domain and RLD 4 [Homo sapiens]
 gi|119574646|gb|EAW54261.1| hect domain and RLD 4, isoform CRA_b [Homo sapiens]
 gi|119574648|gb|EAW54263.1| hect domain and RLD 4, isoform CRA_b [Homo sapiens]
 gi|325463745|gb|ADZ15643.1| hect domain and RLD 4 [synthetic construct]
          Length = 1049

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|348529614|ref|XP_003452308.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Oreochromis
           niloticus]
          Length = 1004

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 179/358 (50%), Gaps = 38/358 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAICDDGKTKTEN 63
           ++ WG+ +DGQLGIG   E+  V   +    +    ++ V  G ++S+ +  DG   T  
Sbjct: 1   MLCWGNAKDGQLGIG--VEKNPVFEPRNCHVFSGRGLKEVGCGGQHSVFLMHDGSVYTCG 58

Query: 64  I--------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P  V AL   KI   + G  H +AV++QG+ +AWG  + GQ G  
Sbjct: 59  SNSCGQLGHDKAGISPEVVGALDTQKITMVSCGRGHSMAVNEQGQLFAWGAGDGGQLGLG 118

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------ 163
               + T RI R   ++ + C  +  + QV  G  H V L+R+G ++TWGQ         
Sbjct: 119 --TTETTVRIPR---LVKRLCDHR--ISQVMCGNQHCVALSRDGQLFTWGQNTSGQLGLG 171

Query: 164 PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G+  ++  P  ++ L  + L  I  G  H+ AL   GA++ WG N  GQLG  D Q R+
Sbjct: 172 KGEPSKL-FPHPLKSLAGIPLAQITAGGDHSFALSLSGAVFGWGKNRAGQLGLNDKQDRA 230

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ L    +V I+ G  H+ ALT DG ++ +G G  G+LG G  +  S+++P++V 
Sbjct: 231 VPCHIKFLRSQKVVYISCGDEHTAALTKDGGLFTFGDGSWGQLGHGSTN--SELLPRRVL 288

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            L G ++ Q++CG  H++A     G +++FG   HG+LG G       P  V  ++P+
Sbjct: 289 ELMGTEVSQIACGRHHTLAFVPSSGVVYAFGCNSHGQLGTGILGDARSPFPVKTSVPS 346



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           ++  WG    GQLG+ + ++R   C +K L   KV  +  G  ++ A+  D         
Sbjct: 209 AVFGWGKNRAGQLGLNDKQDRAVPCHIKFLRSQKVVYISCGDEHTAALTKDGGLFTFGDG 268

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                  G T +E +P +V  L  T++ Q A G  H LA V   G  YA+G N +GQ G
Sbjct: 269 SWGQLGHGSTNSELLPRRVLELMGTEVSQIACGRHHTLAFVPSSGVVYAFGCNSHGQLG 327


>gi|196004949|ref|XP_002112341.1| hypothetical protein TRIADDRAFT_56257 [Trichoplax adhaerens]
 gi|190584382|gb|EDV24451.1| hypothetical protein TRIADDRAFT_56257 [Trichoplax adhaerens]
          Length = 794

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 155/316 (49%), Gaps = 33/316 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G  KT N P+ V AL   KI   A G +H LAV D  + Y++G    G  G   E     
Sbjct: 70  GSNKTRNKPTTVKALKPEKITHVAAGRFHTLAVTDSNKLYSFGQGSEGALGHGDET---- 125

Query: 117 GRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQ 169
                 D+ +P          V  +A GG HS  +T+ G ++ WG     Q     D   
Sbjct: 126 ------DLNMPTSIESLEDKDVNIIACGGYHSAAITKNGELYIWGSNSEGQLGLKNDT-- 177

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR--SQPIPVQ 227
           IS P  +   + V  +A G +H   +  DG L+ +G  E G+LG GD +    ++P  V+
Sbjct: 178 ISYPTMLDLGKSVISVACGYYHTAVVTADGKLYTFGETEGGKLGLGDIEAHKVTKPKVVK 237

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           G+SG  +V +A GG H+ ALT  G+VY +G G++G+LG G     S  +P+ V  L+   
Sbjct: 238 GISG-KVVKVACGGNHTVALTASGQVYTFGSGQNGQLGLGSKIMDSN-IPKLVEALSKRK 295

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           I  ++CG +H+  ++  G +F+FG G HG+LG G +  +   +  P+ +           
Sbjct: 296 IKHIACGESHTAVVSDKGELFTFGDGRHGKLGQGDESFSN--LFKPVKVQRL-------- 345

Query: 348 RRWIAKLVACGGRHTL 363
           + +I   +ACGG HT+
Sbjct: 346 KEFIVLHIACGGCHTI 361



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 159/317 (50%), Gaps = 35/317 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE---- 62
           +  +G+ E GQLGIG+N+ R     VKAL+P K+  V AG  ++LA+ D  K  +     
Sbjct: 56  LFTFGNNEWGQLGIGSNKTRNKPTTVKALKPEKITHVAAGRFHTLAVTDSNKLYSFGQGS 115

Query: 63  ------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                       N+P+ + +L +  +   A GG+H  A+   G  Y WG N  GQ G   
Sbjct: 116 EGALGHGDETDLNMPTSIESLEDKDVNIIACGGYHSAAITKNGELYIWGSNSEGQLG--- 172

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
             K+DT       I  P        V  VA G  H+ V+T +G ++T+G+        GD
Sbjct: 173 -LKNDT-------ISYPTMLDLGKSVISVACGYYHTAVVTADGKLYTFGETEGGKLGLGD 224

Query: 167 IK--QISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ- 222
           I+  +++ P  V+G+  +V  +A G  H +AL   G ++ +G+ + GQLG G     S  
Sbjct: 225 IEAHKVTKPKVVKGISGKVVKVACGGNHTVALTASGQVYTFGSGQNGQLGLGSKIMDSNI 284

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V+ LS   +  IA G  H+  ++D GE++ +G G HG+LG GD   S+   P KV  
Sbjct: 285 PKLVEALSKRKIKHIACGESHTAVVSDKGELFTFGDGRHGKLGQGDESFSNLFKPVKVQR 344

Query: 283 LAGEDIVQVSCGGTHSV 299
           L    ++ ++CGG H++
Sbjct: 345 LKEFIVLHIACGGCHTI 361



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 161/302 (53%), Gaps = 35/302 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG---EEPERKDDTGRILRRDIVIPQRCA 131
           K+   A G  H + V + GR + +G NE+GQ G    +   K  T + L+     P++  
Sbjct: 36  KVTDIACGDEHTVVVTENGRLFTFGNNEWGQLGIGSNKTRNKPTTVKALK-----PEK-- 88

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLI 185
               +  VAAG  H++ +T    ++++GQ        GD   +++P  ++ LE   V +I
Sbjct: 89  ----ITHVAAGRFHTLAVTDSNKLYSFGQGSEGALGHGDETDLNMPTSIESLEDKDVNII 144

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G +H+ A+ ++G L+ WG+N  GQLG  +    +   P     G +++ +A G +H+ 
Sbjct: 145 ACGGYHSAAITKNGELYIWGSNSEGQLGLKND---TISYPTMLDLGKSVISVACGYYHTA 201

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            +T DG++Y +G  E G+LG GD +      P+ V  ++G+ +V+V+CGG H+VALT  G
Sbjct: 202 VVTADGKLYTFGETEGGKLGLGDIEAHKVTKPKVVKGISGK-VVKVACGGNHTVALTASG 260

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +++FG G +G+LG G K+       +  NIP    A   + +R I K +ACG  HT  +
Sbjct: 261 QVYTFGSGQNGQLGLGSKI-------MDSNIPKLVEA---LSKRKI-KHIACGESHTAVV 309

Query: 366 VE 367
            +
Sbjct: 310 SD 311



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 21/214 (9%)

Query: 153 GHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G V+T+G+    GD +     +R    ++V  IA G  H + + E+G L+ +GNNE+GQL
Sbjct: 12  GAVFTFGKSRF-GDNRTNKFWIRS---DKVTDIACGDEHTVVVTENGRLFTFGNNEWGQL 67

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G G  + R++P  V+ L    +  +AAG +H+ A+TD  ++Y +G+G  G LG G  D++
Sbjct: 68  GIGSNKTRNKPTTVKALKPEKITHVAAGRFHTLAVTDSNKLYSFGQGSEGALGHG--DET 125

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +P  +  L  +D+  ++CGG HS A+T++G ++ +G    G+LG             
Sbjct: 126 DLNMPTSIESLEDKDVNIIACGGYHSAAITKNGELYIWGSNSEGQLGLKNDT-------- 177

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            I+ P   + G  V    I+  VACG  HT  + 
Sbjct: 178 -ISYPTMLDLGKSV----IS--VACGYYHTAVVT 204



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 24/171 (14%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           E GA++ +G + +G   T     RS  +           DIA G  H+  +T++G ++ +
Sbjct: 10  ETGAVFTFGKSRFGDNRTNKFWIRSDKV----------TDIACGDEHTVVVTENGRLFTF 59

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G  E G+LG G N   +K  P  V  L  E I  V+ G  H++A+T    ++SFG+G  G
Sbjct: 60  GNNEWGQLGIGSNKTRNK--PTTVKALKPEKITHVAAGRFHTLAVTDSNKLYSFGQGSEG 117

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            LG+G         E  +N+P    + +  D      ++ACGG H+ AI +
Sbjct: 118 ALGHGD--------ETDLNMPTSIESLEDKD----VNIIACGGYHSAAITK 156



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 26/161 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           +  +G  E G+LG+G+ E  +     VVK +   KV  V  G  +++A+   G+  T   
Sbjct: 209 LYTFGETEGGKLGLGDIEAHKVTKPKVVKGISG-KVVKVACGGNHTVALTASGQVYTFGS 267

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                          NIP  V ALS  KI   A G  H   V D+G  + +G   +G+ G
Sbjct: 268 GQNGQLGLGSKIMDSNIPKLVEALSKRKIKHIACGESHTAVVSDKGELFTFGDGRHGKLG 327

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           +     D++   L + + + QR   + IV  +A GG H++V
Sbjct: 328 Q----GDESFSNLFKPVKV-QRL-KEFIVLHIACGGCHTIV 362


>gi|126330678|ref|XP_001365078.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Monodelphis
           domestica]
          Length = 1051

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 157/319 (49%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 26  PQAYGFISDRSIKEVACGGNHSIFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 85

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+ +G +++W     GQ         +++P  ++
Sbjct: 86  HII------------HVACGESHSLALSDQGQLFSWGAGSDGQLGHTTTEDSVAIPRLIK 133

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H +AL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 134 KLNQQMILQVSCGNWHCMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGIPL 193

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWGR   G+LG   +D++ +  P  V LL  + +V +SCG
Sbjct: 194 AQVAAGGAHSFALSLSGAVFGWGRNNAGQLGL--SDETDRQSPCHVKLLRTQKVVYISCG 251

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 252 EEHTAVLTKSGGVFTFGAGSFGQLGHD-------------------SMNDEVNPRRVLEL 292

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 293 MGSEVTQIACGRQHTLAFV 311



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 152/315 (48%), Gaps = 31/315 (9%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTE--------------NIPSQVNALSNTKIVQAAIGGWH 85
           ++ V  G  +S+ + +DG+  T               N P Q+ AL++  I+  A G  H
Sbjct: 37  IKEVACGGNHSIFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 96

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LA+ DQG+ ++WG    GQ G      +D+  I R    + Q+     ++ QV+ G  H
Sbjct: 97  SLALSDQGQLFSWGAGSDGQLGHT--TTEDSVAIPRLIKKLNQQ-----MILQVSCGNWH 149

Query: 146 SVVLTREGHVWTWGQPWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQED 198
            + L  +G  +TWGQ          +    + P RV+ LE + L  +A G  H+ AL   
Sbjct: 150 CMALAADGQFFTWGQNRHGQLGLGKEFPSQASPQRVKSLEGIPLAQVAAGGAHSFALSLS 209

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           GA++ WG N  GQLG  D   R  P  V+ L    +V I+ G  H+  LT  G V+ +G 
Sbjct: 210 GAVFGWGRNNAGQLGLSDETDRQSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGA 269

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGR 317
           G  G+L  G +  + ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+
Sbjct: 270 GSFGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQ 327

Query: 318 LGYGRKVTTGQPMEV 332
           LG G       P  V
Sbjct: 328 LGTGHTCNVKCPSPV 342



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 20/238 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HS+ L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 37  IKEVACGGNHSIFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 96

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTD 249
           +LAL + G L++WG    GQLG   T+  S  IP  ++ L+   ++ ++ G WH  AL  
Sbjct: 97  SLALSDQGQLFSWGAGSDGQLGHTTTE-DSVAIPRLIKKLNQQMILQVSCGNWHCMALAA 155

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F 
Sbjct: 156 DGQFFTWGQNRHGQLGLG-KEFPSQASPQRVKSLEGIPLAQVAAGGAHSFALSLSGAVFG 214

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +GR + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 WGRNNAGQLGLSDETDRQSPCHVKLL------------RTQKVVYISCGEEHTAVLTK 260



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 124/291 (42%), Gaps = 45/291 (15%)

Query: 7   IIAWGSGEDGQLGI---GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----- 58
           +   G    GQLG    GN  E+     + AL    +  V  G  +SLA+ D G+     
Sbjct: 56  VYTCGLNTKGQLGHEREGNKPEQ-----IGALADQHIIHVACGESHSLALSDQGQLFSWG 110

Query: 59  ---------TKTEN---IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    T TE+   IP  +  L+   I+Q + G WHC+A+   G+ + WG N +GQ 
Sbjct: 111 AGSDGQLGHTTTEDSVAIPRLIKKLNQQMILQVSCGNWHCMALAADGQFFTWGQNRHGQL 170

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           G   E               PQR      + + QVAAGG HS  L+  G V+ WG+    
Sbjct: 171 GLGKEFPSQAS---------PQRVKSLEGIPLAQVAAGGAHSFALSLSGAVFGWGRN-NA 220

Query: 165 GDI-------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           G +       +Q    V++   ++V  I+ G  H   L + G ++ +G   +GQLG    
Sbjct: 221 GQLGLSDETDRQSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSFGQLGHDSM 280

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
                P  V  L G  +  IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 281 NDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 331



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 110/255 (43%), Gaps = 49/255 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG    E+   +  ++K L    +  V  G+ + +A+  DG+  T    
Sbjct: 106 LFSWGAGSDGQLGHTTTEDSVAIPRLIKKLNQQMILQVSCGNWHCMALAADGQFFTWGQN 165

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 166 RHGQLGLGKEFPSQASPQRVKSLEGIPLAQVAAGGAHSFALSLSGAVFGWGRNNAGQLG- 224

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQ----VAAGGTHSVVLTREGHVWTWGQPWPP 164
                D+T R           C  KL+  Q    ++ G  H+ VLT+ G V+T+G     
Sbjct: 225 ---LSDETDR--------QSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFG----A 269

Query: 165 GDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLG 213
           G   Q+          P RV  L   +V  IA G  H LA     G ++A+G    GQLG
Sbjct: 270 GSFGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 329

Query: 214 TGDTQPRSQPIPVQG 228
           TG T     P PV+G
Sbjct: 330 TGHTCNVKCPSPVKG 344



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           W  G  G  G   N +     PQ    ++   I +V+CGG HS+ L  DG +++ G    
Sbjct: 7   WSLGHPG--GISSNLQGIVTEPQAYGFISDRSIKEVACGGNHSIFLLEDGEVYTCGLNTK 64

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ R+               P   G   D+  I   VACG  H+LA+
Sbjct: 65  GQLGHEREGN------------KPEQIGALADQHIIH--VACGESHSLAL 100



 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +  +R+  C VK L   KV  +  G  ++  +   G   
Sbjct: 206 LSLSGAVFGWGRNNAGQLGLSDETDRQSPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 265

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 266 TFGAGSFGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329


>gi|354500120|ref|XP_003512150.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
           [Cricetulus griseus]
          Length = 631

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNSKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+G                   +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHG-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 165/356 (46%), Gaps = 45/356 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N         VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLRGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNSKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVP 277
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+LG G  ND+ +   P
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHGSMNDEVN---P 285

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 286 RRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 20/255 (7%)

Query: 120 LRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVR 175
           LR  +  PQ C       +++VA GG HSV L  +G V+T G       G  ++ + P +
Sbjct: 18  LRGIVAEPQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNSKGQLGHEREGNKPEQ 77

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGL 232
           +  L  + +  +A G  H+LAL + G L++WG    GQLG   T+   + P  +Q L+  
Sbjct: 78  IGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQ 137

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+
Sbjct: 138 TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVA 196

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            GG HS AL+  G +F +G  + G+LG   +     P  V +             R    
Sbjct: 197 AGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL------------LRTQKV 244

Query: 353 KLVACGGRHTLAIVE 367
             ++CG  HT  + +
Sbjct: 245 VYISCGEEHTAVLTK 259



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 110/250 (44%), Gaps = 39/250 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G      
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAGSCGQ 273

Query: 162 WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQ 218
              G +     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T 
Sbjct: 274 LGHGSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTC 333

Query: 219 PRSQPIPVQG 228
               P PV+G
Sbjct: 334 NVKCPSPVKG 343



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 79/200 (39%), Gaps = 39/200 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHGSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCGE---------EPER---KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
           GQ G           P +      +G++  R      R     +V+Q+ +GG  + VL  
Sbjct: 325 GQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFKYR-----VVKQIFSGGDQTFVLCS 379

Query: 152 EGHVWTWGQPWPPGDIKQIS 171
                T+    P  D + ++
Sbjct: 380 -----TYENSSPAVDFRTVN 394


>gi|348563446|ref|XP_003467518.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Cavia
           porcellus]
          Length = 1050

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 156/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG HC+ + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQACGFVSDRSVKEVACGGDHCVFLLEDGEVYTCGLNTKGQLGHEREGNQPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+ +G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALATDGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 164/354 (46%), Gaps = 41/354 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKA---LEPYKVRSVVAGSRNSLAICDDGKTKTE- 62
           ++ WG    GQ GIG +  R  V   +A   +    V+ V  G  + + + +DG+  T  
Sbjct: 1   MLCWGYWSLGQPGIGTHL-RGIVAEPQACGFVSDRSVKEVACGGDHCVFLLEDGEVYTCG 59

Query: 63  -------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                        N P Q+ AL++  I+  A G  H LA+ DQG+ ++WG    GQ    
Sbjct: 60  LNTKGQLGHEREGNQPEQIGALADQHIIHVACGESHSLALSDQGQLFSWGAGSDGQ---- 115

Query: 110 PERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----QP 161
                  G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q 
Sbjct: 116 ------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALATDGQFFTWGKNSHGQL 169

Query: 162 WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + 
Sbjct: 170 GLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKD 229

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P++
Sbjct: 230 RESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPRR 287

Query: 280 VNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 288 VLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 126/258 (48%), Gaps = 20/258 (7%)

Query: 117 GRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISV 172
           G  LR  +  PQ C       V++VA GG H V L  +G V+T G       G  ++ + 
Sbjct: 15  GTHLRGIVAEPQACGFVSDRSVKEVACGGDHCVFLLEDGEVYTCGLNTKGQLGHEREGNQ 74

Query: 173 PVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGL 229
           P ++  L  + +  +A G  H+LAL + G L++WG    GQLG   T+   + P  +Q L
Sbjct: 75  PEQIGALADQHIIHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKL 134

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + 
Sbjct: 135 NQQTILQVSCGNWHCLALATDGQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLA 193

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
           QV+ GG HS AL+  G +F +G  + G+LG   +     P  V +             R 
Sbjct: 194 QVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLL------------RT 241

Query: 350 WIAKLVACGGRHTLAIVE 367
                ++CG  HT  + +
Sbjct: 242 QKVVYISCGEEHTAVLTK 259



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALATDGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|195586891|ref|XP_002083201.1| GD13608 [Drosophila simulans]
 gi|194195210|gb|EDX08786.1| GD13608 [Drosophila simulans]
          Length = 1058

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 173/351 (49%), Gaps = 47/351 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLA 52
           MAS   +  WGS   GQLG+G  E+ +       L P +        V+ V  G R++L 
Sbjct: 1   MASGKELYCWGSTSHGQLGLGGIEDEQ------ILTPRQIPWTPDTAVQQVSCGHRHTLF 54

Query: 53  ICDDGKTKT----------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           +   GK              ++P++    +  L +  I+Q + G  H LA+ D G+  +W
Sbjct: 55  LTATGKVYACGSNDYSQLGHDLPTKRPQLIPELQDYVIIQISCGSRHSLALSDWGQVLSW 114

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N+ GQ G   E++     I++   V+ Q  +  ++  Q+A G  HS+ LT  G +++W
Sbjct: 115 GDNDCGQLGHATEKE-----IVQLPKVVRQLVSKTVV--QIACGNNHSLALTSCGELYSW 167

Query: 159 GQPW-------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEY 209
           G           P D+   + P+R+  L  + L  IA G  H+  + + GA++ WG N  
Sbjct: 168 GSNIYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNC 227

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG  D   R+ P  ++ L  L +   A G   S  LT++G V+  G G +G+LG G +
Sbjct: 228 GQLGLNDETNRAYPTQLKTLRTLGVRFAACGDEFSVFLTNEGGVFTCGAGAYGQLGHGFS 287

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
             S++M+P+ V  L G  I QV+CG  H++A     G +++FG G  G+LG
Sbjct: 288 --SNEMLPRMVMELMGSTITQVACGNRHTLAFVPSRGKVYAFGLGSSGQLG 336



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 24/249 (9%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREG 153
           Y WG   +GQ G         G I    I+ P++    P   V+QV+ G  H++ LT  G
Sbjct: 8   YCWGSTSHGQLG--------LGGIEDEQILTPRQIPWTPDTAVQQVSCGHRHTLFLTATG 59

Query: 154 HVWTWGQPWPPGDIKQI------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWG 205
            V+  G      D  Q+        P  +  L+   +I +  G+ H+LAL + G + +WG
Sbjct: 60  KVYACGS----NDYSQLGHDLPTKRPQLIPELQDYVIIQISCGSRHSLALSDWGQVLSWG 115

Query: 206 NNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           +N+ GQLG    +   Q P  V+ L   T+V IA G  HS ALT  GE+Y WG   +G+L
Sbjct: 116 DNDCGQLGHATEKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSNIYGQL 175

Query: 265 GFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           G    ND +    P ++  L G  +  ++CGG HS  +++ G +F +GR + G+LG   +
Sbjct: 176 GVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQLGLNDE 235

Query: 324 VTTGQPMEV 332
                P ++
Sbjct: 236 TNRAYPTQL 244



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P+++       + QVSCG  H++ LT  G +++ G
Sbjct: 6   ELYCWGSTSHGQLGLGGIEDEQILTPRQIPWTPDTAVQQVSCGHRHTLFLTATGKVYACG 65

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+        P + P  IP  ++        ++   ++CG RH+LA+ +W
Sbjct: 66  SNDYSQLGHDL------PTKRPQLIPELQD--------YVIIQISCGSRHSLALSDW 108



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 99/253 (39%), Gaps = 43/253 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG  + GQLG    +E  +   VV+ L    V  +  G+ +SLA+   G+  +    
Sbjct: 111 VLSWGDNDCGQLGHATEKEIVQLPKVVRQLVSKTVVQIACGNNHSLALTSCGELYSWGSN 170

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N P ++  L    +   A GG H   +   G  + WG N  GQ 
Sbjct: 171 IYGQLGVNSPNDLTHCNYPLRLTTLLGIPLAAIACGGNHSFLISKSGAVFGWGRNNCGQL 230

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
           G      D+T R     +    +    L VR  A G   SV LT EG V+T G     G 
Sbjct: 231 G----LNDETNRAYPTQL----KTLRTLGVRFAACGDEFSVFLTNEGGVFTCG----AGA 278

Query: 167 IKQI--------SVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTG 215
             Q+         +P  V  L    +  +A G  H LA     G ++A+G    GQLGT 
Sbjct: 279 YGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLAFVPSRGKVYAFGLGSSGQLGTR 338

Query: 216 DTQPRSQPIPVQG 228
            T+    P  V G
Sbjct: 339 STKSLMLPQVVIG 351



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 40/198 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +   R +   +K L    VR    G   S+ + ++G   
Sbjct: 213 ISKSGAVFGWGRNNCGQLGLNDETNRAYPTQLKTLRTLGVRFAACGDEFSVFLTNEGGVF 272

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +G+ YA+G    
Sbjct: 273 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTITQVACGNRHTLAFVPSRGKVYAFGLGSS 332

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK-------------LIVRQVAAGGTHSVVLT 150
           GQ G        T  ++   +VI    +P              L++RQ+ +GG  S+V T
Sbjct: 333 GQLGTR-----STKSLMLPQVVIGPWVSPSGSAQLQSNDSQVSLVIRQIFSGGDQSIVTT 387

Query: 151 REGHVWTWGQPWPPGDIK 168
                  +    PP D +
Sbjct: 388 T-----LFIDKVPPEDFR 400


>gi|195441394|ref|XP_002068495.1| GK20388 [Drosophila willistoni]
 gi|194164580|gb|EDW79481.1| GK20388 [Drosophila willistoni]
          Length = 1054

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 174/354 (49%), Gaps = 39/354 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDDGKTKT- 61
           +  WG+   GQLG+G  E+ +   ++ +  P+K    +R +  G R++L +  +GK    
Sbjct: 3   LFCWGNASHGQLGMGGIEDEQ--ILIPSQIPWKPDAPLRQIACGHRHTLFLTANGKVYAC 60

Query: 62  ---------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     N+P++    +  L N  +V  A G  H +A+ + G+  +WG N+ GQ G+
Sbjct: 61  GNNDQAQLGHNLPTKRPLLIPELQNYVVVAIACGSRHSMALTEWGQVLSWGDNDCGQLGQ 120

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------ 162
             ++       + R +V          V Q+A G  HS+ LT  G +++WG         
Sbjct: 121 STDQSIIELPKIIRSLVSKH-------VVQIACGNNHSLALTSCGELYSWGSNIYGQLGV 173

Query: 163 -PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            PP ++   + P+R+  L  + L  IA G  H+  + +  A++ +G N  GQLG  D   
Sbjct: 174 KPPQELSHCNYPLRLTTLLGIPLATIACGGNHSFLISKSSAVFGFGRNNCGQLGLNDESN 233

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P  ++ L  L +  +A G   S  LT++G V+  G G +G+LG G N  +++M+P+ 
Sbjct: 234 RAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGTYGQLGHGSN--TNEMLPRM 291

Query: 280 VNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           V  L G  I QV+CG  H++AL    G ++ FG G  G+LG     +   P EV
Sbjct: 292 VMELMGSTITQVACGNRHTLALVPSRGRVYGFGLGSSGQLGNRSTNSVTLPQEV 345



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           +++ WG   HG+LG G  +    ++P ++       + Q++CG  H++ LT +G +++ G
Sbjct: 2   DLFCWGNASHGQLGMGGIEDEQILIPSQIPWKPDAPLRQIACGHRHTLFLTANGKVYACG 61

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D  +LG+        P + P+ IP  +N        ++   +ACG RH++A+ EW
Sbjct: 62  NNDQAQLGHNL------PTKRPLLIPELQN--------YVVVAIACGSRHSMALTEW 104


>gi|426364912|ref|XP_004049535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 2
           [Gorilla gorilla gorilla]
          Length = 1057

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        +R V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRIRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|426364910|ref|XP_004049534.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform 1
           [Gorilla gorilla gorilla]
          Length = 1049

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        +R V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRIRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 287

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 288 VFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 343


>gi|340729980|ref|XP_003403270.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus
           terrestris]
          Length = 1104

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 192/408 (47%), Gaps = 57/408 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV--CVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--E 62
           +  WG+   G+LG+G  E+   +  C V   +  +++ +  G   ++ I  DGK  +   
Sbjct: 49  MFCWGNTRHGELGLGGIEDEIILVPCEVDFKKASEIQQIACGENYTVVITHDGKIYSCGN 108

Query: 63  NIPSQVNALSNTKIVQ------------AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           N   Q+      K +Q            AA G +H +AV++ G+ ++WG N  GQ G   
Sbjct: 109 NDYGQLGHEQGRKRLQLILGLDAFVFKKAACGAYHTIAVNEWGQLFSWGSNSEGQLGLNS 168

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL-------IVRQVAAGGTHSVVLTREGHVWTWG---- 159
           +                  C+P++       I+ Q+A G  H++ LT  G +++WG    
Sbjct: 169 KNF--------------MECSPRMVKTLGTSIIVQIACGMKHALALTNNGELYSWGSNSE 214

Query: 160 -QPWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            Q     DI+    P  +  L    +  IA G +H++A+ + GA++ WG N +GQLG  D
Sbjct: 215 GQLGLGVDIRCEMKPKLINTLAGVPIAFIACGGYHSIAISKSGAIFGWGKNTFGQLGLND 274

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           TQ R+ P  +Q L    +   A G   S  LT DG V+  G G +G+LG G N+  ++++
Sbjct: 275 TQNRNLPYQLQTLRNAKVCYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNN--NEIL 332

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVP 333
           P++V  L G  + Q+SCG  H++AL    G ++++G G  G+LG    R  TT Q +  P
Sbjct: 333 PRQVMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNNSTRSTTTPQVVRGP 392

Query: 334 INIPAPRNAGDGVDRR-------WIAKLVACGGRHTLAIVEWQTEESK 374
              P   +  D  D++       ++ K +  GG H  A V  Q +  K
Sbjct: 393 WVAPNGSSMMD-FDKQFSSCTVGYVVKHIFTGGDHCFATVVTQNDNIK 439



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 18/125 (14%)

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           +L    +++ WG   HG LG G  +    +VP +V+     +I Q++CG  ++V +T DG
Sbjct: 42  SLLKKEDMFCWGNTRHGELGLGGIEDEIILVPCEVDFKKASEIQQIACGENYTVVITHDG 101

Query: 306 HIFSFGRGDHGRLGY--GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            I+S G  D+G+LG+  GRK      +++ + + A           ++ K  ACG  HT+
Sbjct: 102 KIYSCGNNDYGQLGHEQGRK-----RLQLILGLDA-----------FVFKKAACGAYHTI 145

Query: 364 AIVEW 368
           A+ EW
Sbjct: 146 AVNEW 150



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + +   + +WGS  +GQLG+G +                                    +
Sbjct: 200 LTNNGELYSWGSNSEGQLGLGVD-----------------------------------IR 224

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            E  P  +N L+   I   A GG+H +A+   G  + WG N +GQ G      +DT    
Sbjct: 225 CEMKPKLINTLAGVPIAFIACGGYHSIAISKSGAIFGWGKNTFGQLG-----LNDTQ--- 276

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
            R++    +      V   A G   SV LT +G V+T     +GQ     +  +I +P +
Sbjct: 277 NRNLPYQLQTLRNAKVCYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNNNEI-LPRQ 335

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  I+ G  H LAL    G ++AWG    GQLG   T+  + P  V+G
Sbjct: 336 VMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNNSTRSTTTPQVVRG 391



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 34/215 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + +I  WG    GQLG+ + + R     ++ L   KV     G   S+ +  DG   
Sbjct: 253 ISKSGAIFGWGKNTFGQLGLNDTQNRNLPYQLQTLRNAKVCYAACGEEFSVFLTVDGGVF 312

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P QV  L  + + Q + G  H LA V  QGR YAWG    
Sbjct: 313 TCGAGMYGQLGHGSNNNEILPRQVMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGA 372

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQ------------RCAPKLIVRQVAAGGTHSVVLTR 151
           GQ G    R   T +++R   V P              C    +V+ +  GG H      
Sbjct: 373 GQLGNNSTRSTTTPQVVRGPWVAPNGSSMMDFDKQFSSCTVGYVVKHIFTGGDHCF---- 428

Query: 152 EGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIA 186
              V T      P D + +    ++  + + +L+ 
Sbjct: 429 -ATVVTQNDNIKPDDCRTLESSSQILTITEEQLMT 462


>gi|157111251|ref|XP_001651453.1| hect E3 ubiquitin ligase [Aedes aegypti]
 gi|108878447|gb|EAT42672.1| AAEL005820-PA [Aedes aegypti]
          Length = 1057

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 159/313 (50%), Gaps = 33/313 (10%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P +++   ++ + QAA G  H L +   G+ ++ G N++GQ G       DT  +  + 
Sbjct: 26  LPREMDWCHSSSVQQAACGTSHTLLLTKDGKLFSCGNNDHGQLGH------DTDCLPNKR 79

Query: 124 IVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVP--V 174
              PQ  +     IV  V+ G THS+ LT  G V++WG     Q     D++  + P  +
Sbjct: 80  ---PQFISSLENYIVTHVSCGTTHSLALTNWGQVFSWGSNSIGQLGHDTDLQTYTTPRMI 136

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLT 233
           +    + V  IA G FH+LAL   G L++WG N YGQLG G T +    P  V+ L+G+ 
Sbjct: 137 KTIATKTVVQIASGQFHSLALTNSGELFSWGANGYGQLGLGTTGEKVVTPTLVKSLAGIP 196

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  IA GG HS A++  G ++GWG+   G+LG   ND  S+  PQ++  L    +  +SC
Sbjct: 197 IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGL--NDLVSRCFPQQLKTLRNLGVRYISC 254

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G   S  LT++G +F+ G G  G+LG+G             N   PR   + +  +    
Sbjct: 255 GDDFSAFLTQEGGVFTCGAGTFGQLGHG----------TCSNEILPRMVFELMGSKITQ- 303

Query: 354 LVACGGRHTLAIV 366
            +ACG RHTLA V
Sbjct: 304 -IACGRRHTLAFV 315



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 160/323 (49%), Gaps = 37/323 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALE---PYKVRSVVAGSRNSLAICDDGKT--- 59
           ++  WG+   G+LG+G  E+ E V + + ++      V+    G+ ++L +  DGK    
Sbjct: 2   AVYCWGNTVHGELGLGGIED-EQVLLPREMDWCHSSSVQQAACGTSHTLLLTKDGKLFSC 60

Query: 60  ----------KTENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      T+ +P++    +++L N  +   + G  H LA+ + G+ ++WG N  GQ
Sbjct: 61  GNNDHGQLGHDTDCLPNKRPQFISSLENYIVTHVSCGTTHSLALTNWGQVFSWGSNSIGQ 120

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
            G + + +  T   + + I      A K +V Q+A+G  HS+ LT  G +++WG     Q
Sbjct: 121 LGHDTDLQTYTTPRMIKTI------ATKTVV-QIASGQFHSLALTNSGELFSWGANGYGQ 173

Query: 161 PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                  +++  P  V+ L    +  IA G  H+ A+ + GA++ WG N +GQLG  D  
Sbjct: 174 LGLGTTGEKVVTPTLVKSLAGIPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLV 233

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  ++ L  L +  I+ G   S  LT +G V+  G G  G+LG G    S++++P+
Sbjct: 234 SRCFPQQLKTLRNLGVRYISCGDDFSAFLTQEGGVFTCGAGTFGQLGHGTC--SNEILPR 291

Query: 279 KVNLLAGEDIVQVSCGGTHSVAL 301
            V  L G  I Q++CG  H++A 
Sbjct: 292 MVFELMGSKITQIACGRRHTLAF 314



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 11/116 (9%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG   HG LG G  +    ++P++++      + Q +CG +H++ LT+DG +FS G 
Sbjct: 3   VYCWGNTVHGELGLGGIEDEQVLLPREMDWCHSSSVQQAACGTSHTLLLTKDGKLFSCGN 62

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            DHG+LG+    T   P + P  I +  N        +I   V+CG  H+LA+  W
Sbjct: 63  NDHGQLGHD---TDCLPNKRPQFISSLEN--------YIVTHVSCGTTHSLALTNW 107


>gi|332028555|gb|EGI68592.1| Putative E3 ubiquitin-protein ligase HERC4 [Acromyrmex echinatior]
          Length = 1049

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 159/320 (49%), Gaps = 34/320 (10%)

Query: 57  GKTKTENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
           G  + ENI  P +V+ +  + + Q A G  + +A+  +G+ Y+ G N+YGQ G E  RK 
Sbjct: 15  GGIEDENIFMPREVDFIEASNVEQIACGENYTVAITKEGKVYSCGNNDYGQLGHEKARK- 73

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-------PPGDI 167
                  R  +IP   A   + R++A G  H++ +   G +++WG               
Sbjct: 74  -------RLQLIPGLDA--FVFRKIACGNCHTLAVNEWGQLFSWGCNMNGQLGLNSVDCT 124

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPV 226
           +++   ++V G   +  IA G  H++AL  DG L+AWG+N  GQLG G  T    +P  +
Sbjct: 125 ERVPRMIKVLGTNVIVQIACGTEHSIALTNDGELYAWGSNREGQLGLGSYTTTEIKPKRI 184

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
             L+ + +  IA GG+H+  ++  G V+ WGR   G+LG   ND   + +P ++  L   
Sbjct: 185 STLAAVPIAFIACGGYHTIVISKSGAVFSWGRNTFGQLGL--NDVQQRNLPCQLRTLRNA 242

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            +   +CG   SV LT DG +F+ G G +G+LG+G       P +V          G  V
Sbjct: 243 KVCYATCGEEFSVFLTMDGGVFTCGAGMYGQLGHGNTTNEILPRQVM------ELMGSTV 296

Query: 347 DRRWIAKLVACGGRHTLAIV 366
            +      ++CG RHTLA+V
Sbjct: 297 TQ------ISCGKRHTLALV 310



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 165/345 (47%), Gaps = 49/345 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           +  WGS   G+LG+G  E+        V  +E   V  +  G   ++AI  +GK      
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFMPREVDFIEASNVEQIACGENYTVAITKEGKVYSCGN 60

Query: 60  -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        + + IP  ++A    KI   A G  H LAV++ G+ ++WG N  GQ 
Sbjct: 61  NDYGQLGHEKARKRLQLIPG-LDAFVFRKI---ACGNCHTLAVNEWGQLFSWGCNMNGQL 116

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ------ 160
           G      D T R+ R   V+        ++ Q+A G  HS+ LT +G ++ WG       
Sbjct: 117 G--LNSVDCTERVPRMIKVLGTN-----VIVQIACGTEHSIALTNDGELYAWGSNREGQL 169

Query: 161 ---PWPPGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               +   +IK    P R+  L  V    IA G +H + + + GA+++WG N +GQLG  
Sbjct: 170 GLGSYTTTEIK----PKRISTLAAVPIAFIACGGYHTIVISKSGAVFSWGRNTFGQLGLN 225

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           D Q R+ P  ++ L    +     G   S  LT DG V+  G G +G+LG G+   ++++
Sbjct: 226 DVQQRNLPCQLRTLRNAKVCYATCGEEFSVFLTMDGGVFTCGAGMYGQLGHGNT--TNEI 283

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
           +P++V  L G  + Q+SCG  H++AL    G ++++G G  G+LG
Sbjct: 284 LPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLG 328



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 14/116 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WG   HG LG G  +  +  +P++V+ +   ++ Q++CG  ++VA+T++G ++S G 
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFMPREVDFIEASNVEQIACGENYTVAITKEGKVYSCGN 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            D+G+LG+ +     Q       IP       G+D  ++ + +ACG  HTLA+ EW
Sbjct: 61  NDYGQLGHEKARKRLQL------IP-------GLDA-FVFRKIACGNCHTLAVNEW 102



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           ++ + ++ +WG    GQLG+ + ++R   C ++ L   KV     G   S+ +  D    
Sbjct: 205 ISKSGAVFSWGRNTFGQLGLNDVQQRNLPCQLRTLRNAKVCYATCGEEFSVFLTMDGGVF 264

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                       G T  E +P QV  L  + + Q + G  H LA V  +GR YAWG    
Sbjct: 265 TCGAGMYGQLGHGNTTNEILPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGA 324

Query: 104 GQCGEEPERKDDTGRIL--------RRDIVIPQRCAPKL--IVRQVAAGGTHSVV 148
           GQ G    +   T +++           +++    +P++  +V+ + +GG H  V
Sbjct: 325 GQLGNRASQSATTPQVVLGPWSSPSGSSVMLDLHYSPQIDCVVKHIFSGGDHCFV 379


>gi|158259079|dbj|BAF85498.1| unnamed protein product [Homo sapiens]
          Length = 1027

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 53/360 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        VR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +    + + QVA G  HS+ L++   V+ WGQ
Sbjct: 115 QLGLVGSEECIR-------VPRNI----KSLSDIQIVQVACGYYHSLALSKASEVFCWGQ 163

Query: 161 PWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     D K+ + P  ++ L  +    +A G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTH-SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + +++CG  H S  +   G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSIVTEIACGRQHTSTFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 341



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 92/268 (34%), Gaps = 90/268 (33%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 152 LSKASEVFCWGQNKYGQLGLGTD-----------------------------------CK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 177 KQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 236

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLE 180
           +   +  Q+      +  +  G  H+  LT+EG V+T+G                     
Sbjct: 237 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFG--------------------- 267

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
                                 A G   YGQLG   T     P  V  L G  + +IA G
Sbjct: 268 ----------------------AGG---YGQLGHNSTSHEINPRKVFELMGSIVTEIACG 302

Query: 241 GWH-STALTDDGEVYGWGRGEHGRLGFG 267
             H ST +   G +Y +G G +G+LG G
Sbjct: 303 RQHTSTFVPSSGRIYSFGLGGNGQLGTG 330


>gi|158286476|ref|XP_308776.4| AGAP006994-PA [Anopheles gambiae str. PEST]
 gi|157020486|gb|EAA04764.5| AGAP006994-PA [Anopheles gambiae str. PEST]
          Length = 1055

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 172/379 (45%), Gaps = 83/379 (21%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           +I  WG+   G+LG+G  EE + +                                  +P
Sbjct: 2   AIYCWGNTAHGELGLGGIEEEQVM----------------------------------VP 27

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            +++     ++V+   G  H L +  +G+ YA G N++GQ G + +   +     +R   
Sbjct: 28  RKMDWSQADEVVRVECGTSHTLFLTKEGKMYACGNNDHGQLGHDLDTLPN-----KR--- 79

Query: 126 IPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG---------------QPWPPGDIK 168
            PQR       I+  ++ G  HS+ LT  G V++WG               QP P     
Sbjct: 80  -PQRLTSLENYIITCISCGTAHSLALTNWGQVFSWGSNAVGQLGHDAENGRQPTPRM--- 135

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQ 227
                ++  G + V  IA G +H LAL  +G L+AWG+N YGQLG G T  +   P  +Q
Sbjct: 136 -----IKAIGAKHVVQIASGQYHCLALTNNGELYAWGSNSYGQLGIGTTSEKVPMPTLIQ 190

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L+G+ +  IA GG HS A++  G ++GWG+   G+LG   ND +S+  P ++  L    
Sbjct: 191 SLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGL--NDLNSRCYPTQLRTLRSLG 248

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +  +SCG   SV LT +G +F+ G G  G+LG+G             N   PR   + + 
Sbjct: 249 VRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGHGSCS----------NEIVPRKVFELMG 298

Query: 348 RRWIAKLVACGGRHTLAIV 366
            +     +ACG RHTLA V
Sbjct: 299 SKITQ--IACGRRHTLAFV 315



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 11/116 (9%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG   HG LG G  ++   MVP+K++    +++V+V CG +H++ LT++G +++ G 
Sbjct: 3   IYCWGNTAHGELGLGGIEEEQVMVPRKMDWSQADEVVRVECGTSHTLFLTKEGKMYACGN 62

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            DHG+LG+        P + P  + +  N        +I   ++CG  H+LA+  W
Sbjct: 63  NDHGQLGHDLDTL---PNKRPQRLTSLEN--------YIITCISCGTAHSLALTNW 107



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 103/247 (41%), Gaps = 33/247 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + +WGS   GQLG      R+    ++KA+    V  + +G  + LA+ ++G+       
Sbjct: 110 VFSWGSNAVGQLGHDAENGRQPTPRMIKAIGAKHVVQIASGQYHCLALTNNGELYAWGSN 169

Query: 59  --------TKTENIP--SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   T +E +P  + + +L+   I   A GG H  AV   G  + WG N +GQ G 
Sbjct: 170 SYGQLGIGTTSEKVPMPTLIQSLAGVPIAFIACGGNHSFAVSKSGAIFGWGKNTFGQLG- 228

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                D   R     +    R    L VR ++ G   SV LT EG V+T G         
Sbjct: 229 ---LNDLNSRCYPTQL----RTLRSLGVRYISCGDDFSVFLTNEGGVFTCGAGTFGQLGH 281

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRS 221
           G      VP +V  L   ++  IA G  H LA     G ++ +G    GQLG G     S
Sbjct: 282 GSCSNEIVPRKVFELMGSKITQIACGRRHTLAFVPSRGKIYGFGLGGVGQLGIGMVGNHS 341

Query: 222 QPIPVQG 228
            P  V+G
Sbjct: 342 TPQIVRG 348



 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 22/165 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +I  WG    GQLG+ +   R +   ++ L    VR +  G   S+ + ++G   T    
Sbjct: 215 AIFGWGKNTFGQLGLNDLNSRCYPTQLRTLRSLGVRYISCGDDFSVFLTNEGGVFTCGAG 274

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E +P +V  L  +KI Q A G  H LA V  +G+ Y +G    GQ G 
Sbjct: 275 TFGQLGHGSCSNEIVPRKVFELMGSKITQIACGRRHTLAFVPSRGKIYGFGLGGVGQLGI 334

Query: 109 EPERKDDTGRILR-----RDIVIPQRCAPKLIVRQVAAGGTHSVV 148
                  T +I+R      D         ++IV ++ +GG    V
Sbjct: 335 GMVGNHSTPQIVRGPWFKTDFKSSDCDETQIIVNRIFSGGDQCFV 379


>gi|338534909|ref|YP_004668243.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
 gi|337261005|gb|AEI67165.1| RCC1 repeat-containing protein [Myxococcus fulvus HW-1]
          Length = 862

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 180/377 (47%), Gaps = 54/377 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           AWG+   GQLG G   +R     V  L    V +V AG  ++ A+  DG           
Sbjct: 30  AWGNNAWGQLGDGTRTDRLTPVQVPGLT--GVTAVAAGRHHTFAVRQDGTVWAWGLNVWG 87

Query: 59  -----TKTE-NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                T TE + P QV  L  T +   A G  H  AV   G  +AWG N++GQ G+    
Sbjct: 88  QLGDGTHTERHTPVQVPGL--TGVTAIAAGRRHTFAVSQDGTVWAWGDNDWGQLGDG--- 142

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPWPP-GDIKQI 170
                   R D   P +      V  +AAG  H+  + ++G VW WG   W   GD  + 
Sbjct: 143 -------TRADRHTPVQLPELTGVTAIAAGRRHTFAVRQDGTVWAWGDNAWGQLGDGTRT 195

Query: 171 S--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           +   PV+V GL  V  IA G +H LA+++DG +WAWGNN  GQLG G    R  P+ V G
Sbjct: 196 NRLTPVQVPGLTGVTAIAAGDYHTLAVRQDGTVWAWGNNALGQLGDGTYTERLTPVQVPG 255

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+G+T   I+AG  H+ A+  DG V+ WG    G+L  GD  ++ ++ P +V  L+G  +
Sbjct: 256 LTGVTA--ISAGESHTVAVRQDGTVWAWGDNVWGQL--GDGTRTDRLTPVQVPGLSG--V 309

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
             ++ G  H+ A+ +DG ++++G    G+LG G +     P++VP               
Sbjct: 310 TAIAEGRRHTFAVRQDGTVWAWGLNFWGQLGDGTRSDRLTPVQVPDLTS----------- 358

Query: 349 RWIAKLVACGGRHTLAI 365
                 +A G  HTLA+
Sbjct: 359 ---VTAIAAGDYHTLAV 372



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 182/380 (47%), Gaps = 54/380 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG  + GQLG G   +R     V+  E   V ++ AG R++ A+  DG        
Sbjct: 127 TVWAWGDNDWGQLGDGTRADRH--TPVQLPELTGVTAIAAGRRHTFAVRQDGTVWAWGDN 184

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+T  + P QV  L  T +   A G +H LAV   G  +AWG N  GQ G+ 
Sbjct: 185 AWGQLGDGTRTNRLTPVQVPGL--TGVTAIAAGDYHTLAVRQDGTVWAWGNNALGQLGD- 241

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPW-PPGDI 167
                  G    R  + P +      V  ++AG +H+V + ++G VW WG   W   GD 
Sbjct: 242 -------GTYTER--LTPVQVPGLTGVTAISAGESHTVAVRQDGTVWAWGDNVWGQLGDG 292

Query: 168 KQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            +     PV+V GL  V  IA G  H  A+++DG +WAWG N +GQLG G    R  P+ 
Sbjct: 293 TRTDRLTPVQVPGLSGVTAIAEGRRHTFAVRQDGTVWAWGLNFWGQLGDGTRSDRLTPVQ 352

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L+ +T   IAAG +H+ A+  DG V+ WG    G+L  GD   + ++ P +V  L G
Sbjct: 353 VPDLTSVTA--IAAGDYHTLAVRQDGTVWAWGDNVWGQL--GDGTYTDRLTPVQVPGLTG 408

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             +  ++ G +H+VA+ +DG ++++G    G+LG G       P++VP            
Sbjct: 409 --VTAIAAGESHTVAMRQDGTVWAWGDNVWGQLGDGTYTDRLTPVQVPDLTS-------- 458

Query: 346 VDRRWIAKLVACGGRHTLAI 365
                    +A G  HTLA+
Sbjct: 459 ------VTAIAAGDYHTLAV 472



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 120/381 (31%), Positives = 178/381 (46%), Gaps = 55/381 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG+   GQLG G   ER     V  L    V ++ AG  +++A+  DG        
Sbjct: 227 TVWAWGNNALGQLGDGTYTERLTPVQVPGLT--GVTAISAGESHTVAVRQDGTVWAWGDN 284

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+T+ + P QV  LS    +  A G  H  AV   G  +AWG N +GQ G+ 
Sbjct: 285 VWGQLGDGTRTDRLTPVQVPGLSGVTAI--AEGRRHTFAVRQDGTVWAWGLNFWGQLGDG 342

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPWP---PG 165
                      R D + P +      V  +AAG  H++ + ++G VW WG   W     G
Sbjct: 343 ----------TRSDRLTPVQVPDLTSVTAIAAGDYHTLAVRQDGTVWAWGDNVWGQLGDG 392

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV+V GL  V  IA G  H +A+++DG +WAWG+N +GQLG G    R  P+ 
Sbjct: 393 TYTDRLTPVQVPGLTGVTAIAAGESHTVAMRQDGTVWAWGDNVWGQLGDGTYTDRLTPVQ 452

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK--MVPQKVNLL 283
           V  L+ +T   IAAG +H+ A+  DG V  WG   +G+LG G + +S    MVP    + 
Sbjct: 453 VPDLTSVTA--IAAGDYHTLAVRQDGTVCAWGFNAYGQLGDGTSSRSPSPVMVPGLTGVT 510

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
                  ++ G +H+VA+ +DG ++++G    G+LG G  +       +P+ IP      
Sbjct: 511 V---FAALAAGDSHTVAVMQDGTVWAWGLNASGQLGDGATI----DRRIPVQIPGLAG-- 561

Query: 344 DGVDRRWIAKLVACGGRHTLA 364
                      +A G  HTLA
Sbjct: 562 --------VTAIAAGSAHTLA 574



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 168/348 (48%), Gaps = 39/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G   +R  +  V+  +   V ++ AG  ++LA+            
Sbjct: 427 TVWAWGDNVWGQLGDGTYTDR--LTPVQVPDLTSVTAIAAGDYHTLAVRQDGTVCAWGFN 484

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQA-AIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                 DG +     P  V  L+   +  A A G  H +AV   G  +AWG N  GQ G 
Sbjct: 485 AYGQLGDGTSSRSPSPVMVPGLTGVTVFAALAAGDSHTVAVMQDGTVWAWGLNASGQLG- 543

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                 D   I RR   IP +      V  +AAG  H++   ++G VW+WG         
Sbjct: 544 ------DGATIDRR---IPVQIPGLAGVTAIAAGSAHTLAAGQDGAVWSWGANSYGQLGD 594

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G       PV+V GL  V  +A G  H++AL +DG + AWG N +GQLG G T  R  P+
Sbjct: 595 GTTTHRLSPVQVPGLTGVSAMAAGDAHSVALLQDGTVSAWGRNSWGQLGDGTTAARLTPV 654

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL+G+T V  AAG  H+ AL  DG V+ WG  + G+L  GD   + ++ P +V  L 
Sbjct: 655 QVHGLTGVTAV--AAGSLHTVALRQDGTVWAWGYNDLGQL--GDGTTTRRLAPVQVQGL- 709

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             D+  ++ G  H+VA+ +DG ++++G    G+LG G       P++V
Sbjct: 710 -TDVTAIAAGYFHTVAVRQDGTVWAWGYNLWGQLGDGSSTARSTPVQV 756



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 180/382 (47%), Gaps = 51/382 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G    R     V  L    V ++ AG  ++LA+  DG        
Sbjct: 177 TVWAWGDNAWGQLGDGTRTNRLTPVQVPGLT--GVTAIAAGDYHTLAVRQDGTVWAWGNN 234

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T TE + P QV  L+    + A  G  H +AV   G  +AWG N +GQ G+ 
Sbjct: 235 ALGQLGDGTYTERLTPVQVPGLTGVTAISA--GESHTVAVRQDGTVWAWGDNVWGQLGDG 292

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW----PPG 165
                      R D + P +      V  +A G  H+  + ++G VW WG  +      G
Sbjct: 293 ----------TRTDRLTPVQVPGLSGVTAIAEGRRHTFAVRQDGTVWAWGLNFWGQLGDG 342

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV+V  L  V  IA G +H LA+++DG +WAWG+N +GQLG G    R  P+ 
Sbjct: 343 TRSDRLTPVQVPDLTSVTAIAAGDYHTLAVRQDGTVWAWGDNVWGQLGDGTYTDRLTPVQ 402

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+G+T   IAAG  H+ A+  DG V+ WG    G+L  GD   + ++ P +V  L  
Sbjct: 403 VPGLTGVTA--IAAGESHTVAMRQDGTVWAWGDNVWGQL--GDGTYTDRLTPVQVPDL-- 456

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             +  ++ G  H++A+ +DG + ++G   +G+LG G    +  P+ VP           G
Sbjct: 457 TSVTAIAAGDYHTLAVRQDGTVCAWGFNAYGQLGDGTSSRSPSPVMVP-----------G 505

Query: 346 VDRRWIAKLVACGGRHTLAIVE 367
           +    +   +A G  HT+A+++
Sbjct: 506 LTGVTVFAALAAGDSHTVAVMQ 527



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 173/353 (49%), Gaps = 48/353 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G   +R     +  L    V ++ AGS ++LA   DG        
Sbjct: 530 TVWAWGLNASGQLGDGATIDRRIPVQIPGLA--GVTAIAAGSAHTLAAGQDGAVWSWGAN 587

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T T  + P QV  L  T +   A G  H +A+   G   AWG N +GQ G+ 
Sbjct: 588 SYGQLGDGTTTHRLSPVQVPGL--TGVSAMAAGDAHSVALLQDGTVSAWGRNSWGQLGD- 644

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                  G    R  + P +      V  VAAG  H+V L ++G VW WG      D+ Q
Sbjct: 645 -------GTTAAR--LTPVQVHGLTGVTAVAAGSLHTVALRQDGTVWAWGY----NDLGQ 691

Query: 170 IS--------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           +          PV+VQGL  V  IA G FH +A+++DG +WAWG N +GQLG G +  RS
Sbjct: 692 LGDGTTTRRLAPVQVQGLTDVTAIAAGYFHTVAVRQDGTVWAWGYNLWGQLGDGSSTARS 751

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ VQ L+G++   +AAG  H+ A+  DG V+ WG     +LG G +  + +  P  V 
Sbjct: 752 TPVQVQELTGVSA--LAAGYAHTVAVKQDGTVWAWGNNSGTQLGNGSS--TDRYTPVWVE 807

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            L G  +  ++ G  H+ A++ +G  +++GR + G++G G      +P++V I
Sbjct: 808 GLTG--VSALTAGRFHTAAVSPEGFGWAWGRNNFGQVGDGTTADRPRPVDVVI 858



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 167/348 (47%), Gaps = 40/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG    GQLG G + ER     V  L    V ++ AG R++ A+  DG        
Sbjct: 77  TVWAWGLNVWGQLGDGTHTERHTPVQVPGLT--GVTAIAAGRRHTFAVSQDGTVWAWGDN 134

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                        + P Q+  L  T +   A G  H  AV   G  +AWG N +GQ G+ 
Sbjct: 135 DWGQLGDGTRADRHTPVQLPEL--TGVTAIAAGRRHTFAVRQDGTVWAWGDNAWGQLGDG 192

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                      R + + P +      V  +AAG  H++ + ++G VW WG         G
Sbjct: 193 ----------TRTNRLTPVQVPGLTGVTAIAAGDYHTLAVRQDGTVWAWGNNALGQLGDG 242

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              +   PV+V GL  V  I+ G  H +A+++DG +WAWG+N +GQLG G    R  P+ 
Sbjct: 243 TYTERLTPVQVPGLTGVTAISAGESHTVAVRQDGTVWAWGDNVWGQLGDGTRTDRLTPVQ 302

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLSG+T   IA G  H+ A+  DG V+ WG    G+L  GD  +S ++ P +V  L  
Sbjct: 303 VPGLSGVTA--IAEGRRHTFAVRQDGTVWAWGLNFWGQL--GDGTRSDRLTPVQVPDL-- 356

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             +  ++ G  H++A+ +DG ++++G    G+LG G       P++VP
Sbjct: 357 TSVTAIAAGDYHTLAVRQDGTVWAWGDNVWGQLGDGTYTDRLTPVQVP 404



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 138/264 (52%), Gaps = 20/264 (7%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           T +     G +H +AV   G A+AWG N +GQ G+            R D + P +    
Sbjct: 7   TGVTATTAGEYHTVAVRQDGTAWAWGNNAWGQLGDG----------TRTDRLTPVQVPGL 56

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWG-QPW---PPGDIKQISVPVRVQGLEQVKLIAVGA 189
             V  VAAG  H+  + ++G VW WG   W     G   +   PV+V GL  V  IA G 
Sbjct: 57  TGVTAVAAGRHHTFAVRQDGTVWAWGLNVWGQLGDGTHTERHTPVQVPGLTGVTAIAAGR 116

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H  A+ +DG +WAWG+N++GQLG G    R  P+ +  L+G+T   IAAG  H+ A+  
Sbjct: 117 RHTFAVSQDGTVWAWGDNDWGQLGDGTRADRHTPVQLPELTGVTA--IAAGRRHTFAVRQ 174

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG    G+L  GD  +++++ P +V  L G  +  ++ G  H++A+ +DG +++
Sbjct: 175 DGTVWAWGDNAWGQL--GDGTRTNRLTPVQVPGLTG--VTAIAAGDYHTLAVRQDGTVWA 230

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVP 333
           +G    G+LG G       P++VP
Sbjct: 231 WGNNALGQLGDGTYTERLTPVQVP 254



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 168/350 (48%), Gaps = 43/350 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G   +R  +  V+  +   V ++ AG  ++LA+  DG        
Sbjct: 327 TVWAWGLNFWGQLGDGTRSDR--LTPVQVPDLTSVTAIAAGDYHTLAVRQDGTVWAWGDN 384

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T T+ + P QV  L  T +   A G  H +A+   G  +AWG N +GQ G+ 
Sbjct: 385 VWGQLGDGTYTDRLTPVQVPGL--TGVTAIAAGESHTVAMRQDGTVWAWGDNVWGQLGDG 442

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                        D + P +      V  +AAG  H++ + ++G V  WG         G
Sbjct: 443 ----------TYTDRLTPVQVPDLTSVTAIAAGDYHTLAVRQDGTVCAWGFNAYGQLGDG 492

Query: 166 DIKQISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              +   PV V GL  V +   +A G  H +A+ +DG +WAWG N  GQLG G T  R  
Sbjct: 493 TSSRSPSPVMVPGLTGVTVFAALAAGDSHTVAVMQDGTVWAWGLNASGQLGDGATIDRRI 552

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ + GL+G+T   IAAG  H+ A   DG V+ WG   +G+L  GD   + ++ P +V  
Sbjct: 553 PVQIPGLAGVTA--IAAGSAHTLAAGQDGAVWSWGANSYGQL--GDGTTTHRLSPVQVPG 608

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L G  +  ++ G  HSVAL +DG + ++GR   G+LG G       P++V
Sbjct: 609 LTG--VSAMAAGDAHSVALLQDGTVSAWGRNSWGQLGDGTTAARLTPVQV 656



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 20/192 (10%)

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           ++V GL  V     G +H +A+++DG  WAWGNN +GQLG G    R  P+ V GL+G+T
Sbjct: 1   MQVPGLTGVTATTAGEYHTVAVRQDGTAWAWGNNAWGQLGDGTRTDRLTPVQVPGLTGVT 60

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
            V  AAG  H+ A+  DG V+ WG    G+L  GD   + +  P +V  L G  +  ++ 
Sbjct: 61  AV--AAGRHHTFAVRQDGTVWAWGLNVWGQL--GDGTHTERHTPVQVPGLTG--VTAIAA 114

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+ A+++DG ++++G  D G+LG G +     P+++P           GV       
Sbjct: 115 GRRHTFAVSQDGTVWAWGDNDWGQLGDGTRADRHTPVQLPELT--------GV------T 160

Query: 354 LVACGGRHTLAI 365
            +A G RHT A+
Sbjct: 161 AIAAGRRHTFAV 172


>gi|339234781|ref|XP_003378945.1| putative HECT-domain protein [Trichinella spiralis]
 gi|316978479|gb|EFV61464.1| putative HECT-domain protein [Trichinella spiralis]
          Length = 994

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 185/377 (49%), Gaps = 58/377 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +  + S++  G+  DGQLG+G   E      V++L      ++V  ++N L         
Sbjct: 12  ILKSMSLLCCGNTSDGQLGLGGIAEEN----VRSL------TLVESTKNFL--------- 52

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE-PERKDDTGRI 119
                         KI Q A G  H + + D G  ++ G N++ Q G +  +RK +    
Sbjct: 53  --------------KIRQIACGRHHSVMLLDDGSVFSCGNNDFYQLGHDGIKRKPNLYEN 98

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPWPPGDIKQISVPV---- 174
           L   I + Q      ++  VA G  H V LT +GH+++WG   +    +++++V      
Sbjct: 99  LHWYIDVKQSFVGIHVI-SVACGDAHCVALTNDGHLFSWGSNVYGQLGVERMNVVAKARY 157

Query: 175 -RVQ--GLEQVKLIAVGAFHNLALQE-DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            R+Q   L  +  IA G+ H+LAL+  DG L AWG N++GQLG G  +    P  V  L 
Sbjct: 158 PRIQEINLANIVQIACGSNHSLALESTDGVLHAWGLNDHGQLGIGTRESFIGPTTVNKLM 217

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+ +  +AAG  HS  LT  G V+GWG+   G++  G N++   + P  V LL  + +++
Sbjct: 218 GIPICQLAAGASHSLVLTPSGTVFGWGKNMFGQI--GQNEQRDILYPSLVKLLRTQKVIR 275

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++CG   SVA+T  G +F+FG G +G+LG+G + +   P +V   + +            
Sbjct: 276 LACGEDFSVAVTATGGLFTFGAGTYGQLGHGNQNSELFPKQVMELMGS------------ 323

Query: 351 IAKLVACGGRHTLAIVE 367
           +   VACG  HTLAI E
Sbjct: 324 VVLDVACGRCHTLAITE 340



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 112/258 (43%), Gaps = 55/258 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-------KVRSVVAGSRNSLAI------ 53
           + +WGS   GQLG+    ER  V V KA  P         +  +  GS +SLA+      
Sbjct: 133 LFSWGSNVYGQLGV----ERMNV-VAKARYPRIQEINLANIVQIACGSNHSLALESTDGV 187

Query: 54  ------CDDGK----TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                  D G+    T+   I P+ VN L    I Q A G  H L +   G  + WG N 
Sbjct: 188 LHAWGLNDHGQLGIGTRESFIGPTTVNKLMGIPICQLAAGASHSLVLTPSGTVFGWGKNM 247

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTW 158
           +GQ G+  +          RDI+ P     KL+    V ++A G   SV +T  G ++T+
Sbjct: 248 FGQIGQNEQ----------RDILYPS--LVKLLRTQKVIRLACGEDFSVAVTATGGLFTF 295

Query: 159 GQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G         G+      P +V  L    V  +A G  H LA+ E+  L+A+G N  GQL
Sbjct: 296 GAGTYGQLGHGNQNSELFPKQVMELMGSVVLDVACGRCHTLAITEN-KLYAFGLNTSGQL 354

Query: 213 GTGDTQPRSQ---PIPVQ 227
           G  + +  +    PIP++
Sbjct: 355 GLLNVKHTTSIPLPIPIE 372


>gi|392347372|ref|XP_342701.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Rattus
           norvegicus]
          Length = 1185

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 30/311 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P ++ A +  K+++AA G  H L +    R Y+ G N  GQ G++  +            
Sbjct: 170 PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKRPE------ 223

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGL 179
             P +    + +  V+ G  HSV +  +G V+TWG         G+ K+IS +P ++  L
Sbjct: 224 --PIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSL 281

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVD 236
             +K+I V  G +H+LAL EDG +++WG+N  GQLG G+    ++ P  V+ L G+ L  
Sbjct: 282 AGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGIPLAQ 341

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           +AAGG HS AL+  G  +GWG    G+L   G++ K     P  +  L   ++V +SCG 
Sbjct: 342 VAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGY 401

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+  LT DG +F+FG     +L +  +   G P  +          G  V +      +
Sbjct: 402 EHTSVLTEDGQVFTFGGSSSEQLQHSPRSGRGGPQLI-------EGIGGHVSQ------I 448

Query: 356 ACGGRHTLAIV 366
            CG  HT+A V
Sbjct: 449 ECGSYHTIAYV 459



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 24/209 (11%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           W PG  +    P R++    +KL+  A G  H+L L  +  +++ G+N  GQLG    Q 
Sbjct: 163 WAPGRRQ----PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQS 218

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             +P P+Q LS + +  ++ G  HS A+   G V+ WG G  G+LG G++ + S M P K
Sbjct: 219 TKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFM-PTK 277

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPI--NI 336
           +N LAG  I+QVSCG  HS+AL+ DG +FS+G    G+LG G  + +   P +V     I
Sbjct: 278 INSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGI 337

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P  +              VA GG H+ A+
Sbjct: 338 PLAQ--------------VAAGGTHSFAL 352



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 39/286 (13%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S   + + G    GQLG  + +  +    ++AL    +  V  G  +S+A+C  G+  T 
Sbjct: 196 SNHRVYSCGDNSRGQLGQKSPQSTKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVFTW 255

Query: 62  ----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                             +P+++N+L+  KI+Q + G +H LA+ + G+ ++WG N  GQ
Sbjct: 256 GAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQ 315

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTW----- 158
            G         G  L      PQ+      + + QVAAGGTHS  L+  G  + W     
Sbjct: 316 LG--------LGNNLCSQ-ASPQKVKSLEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRS 366

Query: 159 GQPWPPGDI--KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           GQ    G+   +QI  P  +  L+ + +  I+ G  H   L EDG ++ +G +   QL  
Sbjct: 367 GQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSSSEQLQH 426

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
                R  P  ++G+ G  +  I  G +H+ A +   G+V   GRG
Sbjct: 427 SPRSGRGGPQLIEGIGG-HVSQIECGSYHTIAYVYTTGQVVSLGRG 471


>gi|293346825|ref|XP_001064216.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Rattus
           norvegicus]
          Length = 1149

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 30/311 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P ++ A +  K+++AA G  H L +    R Y+ G N  GQ G++  +            
Sbjct: 170 PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKRPE------ 223

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGL 179
             P +    + +  V+ G  HSV +  +G V+TWG         G+ K+IS +P ++  L
Sbjct: 224 --PIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSL 281

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVD 236
             +K+I V  G +H+LAL EDG +++WG+N  GQLG G+    ++ P  V+ L G+ L  
Sbjct: 282 AGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGIPLAQ 341

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           +AAGG HS AL+  G  +GWG    G+L   G++ K     P  +  L   ++V +SCG 
Sbjct: 342 VAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGY 401

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+  LT DG +F+FG     +L +  +   G P  +          G  V +      +
Sbjct: 402 EHTSVLTEDGQVFTFGGSSSEQLQHSPRSGRGGPQLI-------EGIGGHVSQ------I 448

Query: 356 ACGGRHTLAIV 366
            CG  HT+A V
Sbjct: 449 ECGSYHTIAYV 459



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 24/209 (11%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           W PG  +    P R++    +KL+  A G  H+L L  +  +++ G+N  GQLG    Q 
Sbjct: 163 WAPGRRQ----PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQS 218

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             +P P+Q LS + +  ++ G  HS A+   G V+ WG G  G+LG G++ + S M P K
Sbjct: 219 TKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFM-PTK 277

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPI--NI 336
           +N LAG  I+QVSCG  HS+AL+ DG +FS+G    G+LG G  + +   P +V     I
Sbjct: 278 INSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGI 337

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P  +              VA GG H+ A+
Sbjct: 338 PLAQ--------------VAAGGTHSFAL 352



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 39/286 (13%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S   + + G    GQLG  + +  +    ++AL    +  V  G  +S+A+C  G+  T 
Sbjct: 196 SNHRVYSCGDNSRGQLGQKSPQSTKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVFTW 255

Query: 62  ----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                             +P+++N+L+  KI+Q + G +H LA+ + G+ ++WG N  GQ
Sbjct: 256 GAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQ 315

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTW----- 158
            G         G  L      PQ+      + + QVAAGGTHS  L+  G  + W     
Sbjct: 316 LG--------LGNNLCSQ-ASPQKVKSLEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRS 366

Query: 159 GQPWPPGDI--KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           GQ    G+   +QI  P  +  L+ + +  I+ G  H   L EDG ++ +G +   QL  
Sbjct: 367 GQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSSSEQLQH 426

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
                R  P  ++G+ G  +  I  G +H+ A +   G+V   GRG
Sbjct: 427 SPRSGRGGPQLIEGIGG-HVSQIECGSYHTIAYVYTTGQVVSLGRG 471


>gi|307176782|gb|EFN66182.1| Probable E3 ubiquitin-protein ligase HERC2 [Camponotus floridanus]
          Length = 4802

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 51/394 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     ++L   +   +  G +   A+  DGK       
Sbjct: 3944 AIYGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTGYG 4003

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  IP+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 4004 AAGRLGIGGTDSVMIPTLLESIQHVFIKKVAVSSGGKHCLALSSEGHVYSWGEGDDGKLG 4063

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
               +   D  +++   + +         +  +A GG HS  +T  G ++TWG+       
Sbjct: 4064 HGNKMSYDRPKLIEDLLGVE--------IIDIACGGHHSAAITSAGWLYTWGKGRYGRLG 4115

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V+ L+  K+I V    G    L + +D  +W+WG+ +YG+LG G +  
Sbjct: 4116 HGDSDDQLRPKVVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKLGRGGSDG 4175

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL ++ +  G   S ALT  G VY WG+G++ RLG G +D   +  P+K
Sbjct: 4176 CKVPLKIDSLAGLGVIKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRR--PRK 4233

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G    T   +  P  + A 
Sbjct: 4234 VAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEGQLGDG----TTSALHRPRLVHAL 4289

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            +  G  + R      VACG  HTLA   W T ++
Sbjct: 4290 Q--GKKITR------VACGSAHTLA---WSTAKA 4312



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 159/314 (50%), Gaps = 32/314 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K +  A G      V  +G+ YA G    G+ G      DD      + 
Sbjct: 2984 LPVYSEVLSKLKPIHIAGGSKTLFIVSQEGKLYACGEGTNGRLG----LGDDNNVCEPK- 3038

Query: 124  IVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
               P     + ++++VA  +GG H++ LT++G V++WG+        G+   +  P  ++
Sbjct: 3039 ---PIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNNMSLDKPKLIE 3095

Query: 178  GLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
             L+  +++ IA G+ H+ A+  +G L+ WG  EYG+LG GDT  +++P  VQ L G  +V
Sbjct: 3096 TLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDTVTQARPKLVQTLVGHRVV 3155

Query: 236  DIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
             +A G     + ALT DG VY WG G+ G+LG G +D      P  V  L G  +VQV C
Sbjct: 3156 QVACGSRDAQTMALTTDGCVYSWGDGDFGKLGRGGSDGC--YTPLVVERLNGLGVVQVEC 3213

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+  + I  
Sbjct: 3214 GAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGLRGKKIVH 3262

Query: 354  LVACGGRHTLAIVE 367
             VA G  H LA+ +
Sbjct: 3263 -VAVGALHCLAVTD 3275



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 156/335 (46%), Gaps = 66/335 (19%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV------AGSRNSLAICDDGKT- 59
            + A G G +G+LG+G++     VC  K + P+  + V+      +G +++LA+  DGK  
Sbjct: 3015 LYACGEGTNGRLGLGDDNN---VCEPKPI-PFLSQFVIKKVAVHSGGKHALALTQDGKVF 3070

Query: 60   ---------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                            + + P  +  L + +I   A G  H  A+   G  Y WG  EYG
Sbjct: 3071 SWGEGEDGKLGHGNNMSLDKPKLIETLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYG 3130

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHV 155
            + G               D V   R  PKL+       V QVA G     ++ LT +G V
Sbjct: 3131 RLGHG-------------DTVTQAR--PKLVQTLVGHRVVQVACGSRDAQTMALTTDGCV 3175

Query: 156  WTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWG 205
            ++WG     GD  ++          P+ V+ L  + ++ V  GA  +LAL + G +W WG
Sbjct: 3176 YSWGD----GDFGKLGRGGSDGCYTPLVVERLNGLGVVQVECGAQFSLALTKYGEVWTWG 3231

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
              +Y +LG G+     +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G
Sbjct: 3232 KGDYFRLGHGNDHHVRKPTLVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQG 3291

Query: 266  FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             G    + K  P  V+ L    + +VSCG +HS+A
Sbjct: 3292 NGTTSVNRK--PSLVHELEDARVNRVSCGSSHSIA 3324



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 141/289 (48%), Gaps = 36/289 (12%)

Query: 92   QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVL 149
            +   Y WG N+          KD  G +    I +P       KL    +A G     ++
Sbjct: 2960 ESAVYVWGLND----------KDQLGGLKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFIV 3009

Query: 150  TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            ++EG ++  G+        GD   +  P  +  L Q  +K +AV  G  H LAL +DG +
Sbjct: 3010 SQEGKLYACGEGTNGRLGLGDDNNVCEPKPIPFLSQFVIKKVAVHSGGKHALALTQDGKV 3069

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  E G+LG G+     +P  ++ L    + DIA G  HS A+  +GE+Y WG GE+
Sbjct: 3070 FSWGEGEDGKLGHGNNMSLDKPKLIETLKSKRIRDIACGSGHSAAIASNGELYTWGLGEY 3129

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GD    ++  P+ V  L G  +VQV+CG     ++ALT DG ++S+G GD G+LG
Sbjct: 3130 GRLGHGDTVTQAR--PKLVQTLVGHRVVQVACGSRDAQTMALTTDGCVYSWGDGDFGKLG 3187

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             G       P+ V       R  G GV +      V CG + +LA+ ++
Sbjct: 3188 RGGSDGCYTPLVV------ERLNGLGVVQ------VECGAQFSLALTKY 3224



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 32/232 (13%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           AWGG ++G  G  P   D                  +L ++Q+       ++L+  G+V+
Sbjct: 444 AWGGVKFGN-GSTPFYCDAIA---------------ELGIKQLCCTERALMILSLNGNVY 487

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFH-----NLALQEDGALWAWGNNEYGQ 211
                       +   P RV G    KL+ + A H     +LAL +DG +++WGN + G+
Sbjct: 488 NMYHG------SETQYPQRVHGFSD-KLVTMIASHSDGKHHLALTQDGCVYSWGNGDGGR 540

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG GDT    +P  ++ L    +V IA G  +S AL+  GE+Y WGRG +GRLG G+ D 
Sbjct: 541 LGHGDTVSYDEPKLIEALLEKNIVFIACGSTYSAALSVSGELYTWGRGNYGRLGHGNFDD 600

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYG 321
              M+P  V  L G  +V V+CG   + ++ +T  G +FS+G GD+G+LG G
Sbjct: 601 V--MIPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRG 650



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 4045 LSSEGHVYSWGEGDDGKLGHGNK------------------------------------M 4068

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            + + P  +  L   +I+  A GG H  A+   G  Y WG   YG+ G       D+   L
Sbjct: 4069 SYDRPKLIEDLLGVEIIDIACGGHHSAAITSAGWLYTWGKGRYGRLGH-----GDSDDQL 4123

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            R  +V   +   K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 4124 RPKVVEALQ-DYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKV 4178

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P+++  L  + +I V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 4179 PLKIDSLAGLGVIKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRKVAALQ 4238

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A +D GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I +
Sbjct: 4239 GKKIISIATGSLHCVACSDKGEVFTWGDNDEGQL--GDGTTSALHRPRLVHALQGKKITR 4296

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 4297 VACGSAHTLA 4306



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 34/286 (11%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD 115
           P +V+  S+  +   A    G H LA+   G  Y+WG  + G+ G       +EP+  + 
Sbjct: 498 PQRVHGFSDKLVTMIASHSDGKHHLALTQDGCVYSWGNGDGGRLGHGDTVSYDEPKLIE- 556

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              +L ++IV             +A G T+S  L+  G ++TWG+        G+   + 
Sbjct: 557 --ALLEKNIVF------------IACGSTYSAALSVSGELYTWGRGNYGRLGHGNFDDVM 602

Query: 172 VPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +P  V  L+   ++ V    G    L +   G +++WG+ +YG+LG G T     P  V 
Sbjct: 603 IPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSKTPKIVD 662

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L  + +V +  G   S ALT  GEVY WG+G+  RLG G  +      P+ +  L  + 
Sbjct: 663 KLLDINVVKVFCGSQFSAALTAHGEVYTWGKGDTYRLGHGSEEHVR--YPKIIESLRDKK 720

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           I  +S G TH + LT D  ++ +GR D+G++         +P   P
Sbjct: 721 IKDLSVGATHILVLTEDQFVYGWGRNDYGQIDPTLGSVISEPTLCP 766



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 127/255 (49%), Gaps = 26/255 (10%)

Query: 127 PQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           PQR    + KL+    + + G H + LT++G V++WG         GD      P  ++ 
Sbjct: 498 PQRVHGFSDKLVTMIASHSDGKHHLALTQDGCVYSWGNGDGGRLGHGDTVSYDEPKLIEA 557

Query: 179 L--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           L  + +  IA G+ ++ AL   G L+ WG   YG+LG G+      P  V  L G T+V 
Sbjct: 558 LLEKNIVFIACGSTYSAALSVSGELYTWGRGNYGRLGHGNFDDVMIPTLVTTLKGHTVVH 617

Query: 237 IAAGGWHSTAL--TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           +A G   S  L  T  G V+ WG G++G+LG G  D S    P+ V+ L   ++V+V CG
Sbjct: 618 VACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSK--TPKIVDKLLDINVVKVFCG 675

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
              S ALT  G ++++G+GD  RLG+G +    + +  P  I + R      D++   K 
Sbjct: 676 SQFSAALTAHGEVYTWGKGDTYRLGHGSE----EHVRYPKIIESLR------DKK--IKD 723

Query: 355 VACGGRHTLAIVEWQ 369
           ++ G  H L + E Q
Sbjct: 724 LSVGATHILVLTEDQ 738



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P P + LS L  + +A G     A+T DG+VY  G 
Sbjct: 3943 GAIYGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTGY 4002

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S M+P  +  +    I  V VS GG H +AL+ +GH++S+G GD G
Sbjct: 4003 GAAGRLGIGGTD--SVMIPTLLESIQHVFIKKVAVSSGGKHCLALSSEGHVYSWGEGDDG 4060

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G K++  +P  +           D +    I   +ACGG H+ AI
Sbjct: 4061 KLGHGNKMSYDRPKLIE----------DLLGVEIID--IACGGHHSAAI 4097



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 48/252 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +AS   +  WG GE G+LG G+   +    +V+ L  ++V  V  GSR++          
Sbjct: 3115 IASNGELYTWGLGEYGRLGHGDTVTQARPKLVQTLVGHRVVQVACGSRDA---------- 3164

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      +A+   G  Y+WG  ++G+ G        T  ++
Sbjct: 3165 ------------------------QTMALTTDGCVYSWGDGDFGKLGRGGSDGCYTPLVV 3200

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V QV  G   S+ LT+ G VWTWG+        G+   +  P  V
Sbjct: 3201 ER--------LNGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV 3252

Query: 177  QGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL   K+  +AVGA H LA+ + G ++AWG+N++GQ G G T    +P  V  L    +
Sbjct: 3253 EGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTTSVNRKPSLVHELEDARV 3312

Query: 235  VDIAAGGWHSTA 246
              ++ G  HS A
Sbjct: 3313 NRVSCGSSHSIA 3324



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 32/264 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG+G+ G+LG G+    +   +++AL    +  +  GS  S A+   G+  T     
Sbjct: 530 VYSWGNGDGGRLGHGDTVSYDEPKLIEALLEKNIVFIACGSTYSAALSVSGELYTWGRGN 589

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                        IP+ V  L    +V  A G      L V   G  ++WG  +YG+ G 
Sbjct: 590 YGRLGHGNFDDVMIPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGR 649

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T +I+ + + I         V +V  G   S  LT  G V+TWG+        
Sbjct: 650 GGTDGSKTPKIVDKLLDIN--------VVKVFCGSQFSAALTAHGEVYTWGKGDTYRLGH 701

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G  + +  P  ++ L  +++K ++VGA H L L ED  ++ WG N+YGQ+        S+
Sbjct: 702 GSEEHVRYPKIIESLRDKKIKDLSVGATHILVLTEDQFVYGWGRNDYGQIDPTLGSVISE 761

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTA 246
           P     LS  T++ +A+G   S A
Sbjct: 762 PTLCPTLSSKTVIGLASGPTQSFA 785



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            ++ A++ WG N+  QLG         P+  + LS L  + IA G      ++ +G++Y  
Sbjct: 2959 QESAVYVWGLNDKDQLGGLKGSKIKLPVYSEVLSKLKPIHIAGGSKTLFIVSQEGKLYAC 3018

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGD 314
            G G +GRLG GD++   +  P+ +  L+   I  V V  GG H++ALT+DG +FS+G G+
Sbjct: 3019 GEGTNGRLGLGDDNNVCE--PKPIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGE 3076

Query: 315  HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG+G  ++  +P  +   + + R            + +ACG  H+ AI
Sbjct: 3077 DGKLGHGNNMSLDKPKLIE-TLKSKR-----------IRDIACGSGHSAAI 3115



 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           + AWG  ++G          S P     ++ L +  +         L+ +G VY    G 
Sbjct: 442 VLAWGGVKFGN--------GSTPFYCDAIAELGIKQLCCTERALMILSLNGNVYNMYHG- 492

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGDHGRL 318
                      S    PQ+V+  + + +  ++    G H +ALT+DG ++S+G GD GRL
Sbjct: 493 -----------SETQYPQRVHGFSDKLVTMIASHSDGKHHLALTQDGCVYSWGNGDGGRL 541

Query: 319 GYGRKVTTGQP 329
           G+G  V+  +P
Sbjct: 542 GHGDTVSYDEP 552


>gi|159038540|ref|YP_001537793.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157917375|gb|ABV98802.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 579

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 166/382 (43%), Gaps = 45/382 (11%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------------ 55
           +AWG+   G+LG G   +      V       + +V  G+ +SLA+              
Sbjct: 63  LAWGTNSAGRLGDGTTTDSSSPVSVNVPAGTTITAVAGGAGHSLAVTSAGTALAWGDNAF 122

Query: 56  ----DGKT-KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
               DG T  + + P  V+  + T +   + GG H LAV   G A AWG N +GQ G+  
Sbjct: 123 GQLGDGTTIPSSSTPVAVDVPAGTTVTALSGGGVHNLAVTSAGTALAWGDNFWGQLGD-- 180

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGD 166
                 G   R    +         +  VAAG  HS+ +T  G    WG         G 
Sbjct: 181 ------GSTTRSRTPVAVNVPAGTTITAVAAGQGHSLAVTSAGTALAWGDNSSGQLGDGT 234

Query: 167 IKQISVPVR--VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               S+PV   V     +  +A G  H+LAL   G + AWG N  GQLG G T   S P+
Sbjct: 235 ATDSSIPVAADVPAGTTITAVAAGGLHSLALTSGGDVLAWGANGSGQLGDGTTTSSSTPV 294

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V   +G T+  +AAGG HS A+T  G+V  WG    G+LG G    SS   P  VN+ A
Sbjct: 295 AVDVPAGTTVTAVAAGGRHSLAVTSAGDVLAWGDNTAGQLGDGSTTHSST--PVAVNVPA 352

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
           G  I  V+ G  HS+A+T      ++G    G+LG G   TT   + V +++PA      
Sbjct: 353 GTTITAVATGSGHSLAVTSTDTALAWGDNTFGQLGDGS--TTSSIIPVAVDLPAGTT--- 407

Query: 345 GVDRRWIAKLVACGGRHTLAIV 366
                     +A G  H+LAIV
Sbjct: 408 -------VTAIAGGSFHSLAIV 422



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 67/174 (38%), Gaps = 25/174 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           ++AWG+   GQLG G          V       V +V AG R+SLA+             
Sbjct: 271 VLAWGANGSGQLGDGTTTSSSTPVAVDVPAGTTVTAVAAGGRHSLAVTSAGDVLAWGDNT 330

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T   + P  VN  + T I   A G  H LAV     A AWG N +GQ G+  
Sbjct: 331 AGQLGDGSTTHSSTPVAVNVPAGTTITAVATGSGHSLAVTSTDTALAWGDNTFGQLGD-- 388

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
                T  I+   + +P        V  +A G  HS+ +       T  Q  PP
Sbjct: 389 --GSTTSSIIPVAVDLPAGT----TVTAIAGGSFHSLAIVPSTSTTTL-QVSPP 435



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 13/146 (8%)

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V G++ +    + A G  S A    G    WG    GRLG G    SS   P  VN+ AG
Sbjct: 35  VLGVTSVGAARVLAQGVPSAAAGPPGTGLAWGTNSAGRLGDGTTTDSSS--PVSVNVPAG 92

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             I  V+ G  HS+A+T  G   ++G    G+LG G  + +     V +++PA       
Sbjct: 93  TTITAVAGGAGHSLAVTSAGTALAWGDNAFGQLGDGTTIPSSS-TPVAVDVPAGTT---- 147

Query: 346 VDRRWIAKLVACGGRHTLAIVEWQTE 371
                    ++ GG H LA+    T 
Sbjct: 148 ------VTALSGGGVHNLAVTSAGTA 167


>gi|260832820|ref|XP_002611355.1| hypothetical protein BRAFLDRAFT_120334 [Branchiostoma floridae]
 gi|229296726|gb|EEN67365.1| hypothetical protein BRAFLDRAFT_120334 [Branchiostoma floridae]
          Length = 1187

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 183/387 (47%), Gaps = 53/387 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------KT 59
           WG    GQLG     + +      AL   +   ++ G +   A+   G           T
Sbjct: 313 WGHNHRGQLGGVEGAKVKLPTPCDALAALRPVQLIGGEQTLFAVYATGYGAGGRLGIGGT 372

Query: 60  KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
           ++ + P+ + ++ +  I + A+  GG HCLA+  +G  ++WG  E G+ G       D  
Sbjct: 373 ESVSSPTLLESIQHVHIKKVAVNSGGKHCLALSSEGEVFSWGEAEDGKLGHGNRNSCDRP 432

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
           R++       +    K +V  +AAGG HS  +T  G ++TWG+        GD +    P
Sbjct: 433 RVI-------ESLRGKEVV-DIAAGGAHSACITSTGELFTWGKGRYGRLGHGDSEDQMKP 484

Query: 174 VRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             V+ L+ V++I V    G    L + +D ++W+WG+ +YG+LG G +     P  V+ L
Sbjct: 485 KLVEALKGVRVIDVACGSGDAQTLCITDDDSVWSWGDGDYGKLGRGGSDGCKIPQKVEAL 544

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            G  +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P+KV  L G++++
Sbjct: 545 IGQGVVKVECGSQFSVALTKSGCVYTWGKGDYHRLGHGSDDHVRR--PRKVAALQGKNVI 602

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA----GDG 345
            ++ G  H VA T  G +F++G  D G+LG G              IP PR      G  
Sbjct: 603 SIATGSLHCVACTDQGEVFTWGDNDEGQLGDGSTSA----------IPRPRLVAALQGKK 652

Query: 346 VDRRWIAKLVACGGRHTLAIVEWQTEE 372
           ++R      VACG  H+LA   W T +
Sbjct: 653 INR------VACGSAHSLA---WSTSK 670



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 135/313 (43%), Gaps = 64/313 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG  EDG+LG GN                         RNS   CD     
Sbjct: 404 LSSEGEVFSWGEAEDGKLGHGN-------------------------RNS---CDR---- 431

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
               P  + +L   ++V  A GG H   +   G  + WG   YG+ G    E + K    
Sbjct: 432 ----PRVIESLRGKEVVDIAAGGAHSACITSTGELFTWGKGRYGRLGHGDSEDQMKPKLV 487

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
             L+   VI   C          +G   ++ +T +  VW+WG     GD  ++       
Sbjct: 488 EALKGVRVIDVACG---------SGDAQTLCITDDDSVWSWGD----GDYGKLGRGGSDG 534

Query: 171 -SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
             +P +V+ L  + V  +  G+  ++AL + G ++ WG  +Y +LG G      +P  V 
Sbjct: 535 CKIPQKVEALIGQGVVKVECGSQFSVALTKSGCVYTWGKGDYHRLGHGSDDHVRRPRKVA 594

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L G  ++ IA G  H  A TD GEV+ WG  + G+L  GD   S+   P+ V  L G+ 
Sbjct: 595 ALQGKNVISIATGSLHCVACTDQGEVFTWGDNDEGQL--GDGSTSAIPRPRLVAALQGKK 652

Query: 288 IVQVSCGGTHSVA 300
           I +V+CG  HS+A
Sbjct: 653 INRVACGSAHSLA 665


>gi|218779101|ref|YP_002430419.1| chromosome condensation regulator RCC1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760485|gb|ACL02951.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 671

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 167/345 (48%), Gaps = 43/345 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLA----------ICD 55
           S+ +WGS   GQLG+      E +     L P  V ++ +G    L           ICD
Sbjct: 58  SVWSWGSNSAGQLGV------ESLTPASVLAP--VHALYSGDDFHLFYDTDGDGTGDICD 109

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           D           ++   N   + AA G    L +   G  ++WG N Y   G        
Sbjct: 110 DCPYDPFKTAPGLSGCGNAVPMLAA-GTQFSLGLKTDGTVWSWGCNTYATLGLGD----- 163

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI- 170
                R D   PQ+         +AAG  H++ LTR+G VW+WG  +      G I +  
Sbjct: 164 -----RVDRNTPQKVEALSNAVALAAGDDHTLALTRDGSVWSWGWNYNGQLGLGSIHEDT 218

Query: 171 --SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             S P +V+ +  V  IA   +H  AL  DG +W+WG+N++GQLG GD   R  P  V+ 
Sbjct: 219 YESTPKKVEAISNVTAIAAQTYHTQALTRDGNVWSWGSNDFGQLGMGDQNDRDAPQKVEA 278

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           LS   +V I AGG HS A+T DG+V+ WG    G+LG G  D   +  PQKV  L+  ++
Sbjct: 279 LS--NVVAINAGGNHSLAVTRDGQVWAWGENSEGQLGLG--DLWDRDAPQKVEALS--NV 332

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR-KVTTGQPMEV 332
           V ++ GG H++ALTRDG ++++G+   G++G G  +    +P+ V
Sbjct: 333 VAINAGGDHTLALTRDGSVWAWGKNGRGQIGTGEGQSLYNEPVHV 377



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 163/348 (46%), Gaps = 62/348 (17%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP------ 110
           G T  +N+P Q++ LSN  +V  A G  H LAV   G  ++WG N  GQ G E       
Sbjct: 23  GATGDQNLPVQLSYLSN--VVSLAGGEKHSLAVSGDGSVWSWGSNSAGQLGVESLTPASV 80

Query: 111 ------------------ERKDDTGRILRRDIVIPQRCAPKL-----IVRQVAAGGTHSV 147
                                D TG I       P + AP L      V  +AAG   S+
Sbjct: 81  LAPVHALYSGDDFHLFYDTDGDGTGDICDDCPYDPFKTAPGLSGCGNAVPMLAAGTQFSL 140

Query: 148 VLTREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
            L  +G VW+WG         GD    + P +V+ L     +A G  H LAL  DG++W+
Sbjct: 141 GLKTDGTVWSWGCNTYATLGLGDRVDRNTPQKVEALSNAVALAAGDDHTLALTRDGSVWS 200

Query: 204 WGNNEYGQLGTGDTQP---RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           WG N  GQLG G        S P  V+ +S +T   IAA  +H+ ALT DG V+ WG  +
Sbjct: 201 WGWNYNGQLGLGSIHEDTYESTPKKVEAISNVTA--IAAQTYHTQALTRDGNVWSWGSND 258

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+LG GD  ++ +  PQKV  L+  ++V ++ GG HS+A+TRDG ++++G    G+LG 
Sbjct: 259 FGQLGMGD--QNDRDAPQKVEALS--NVVAINAGGNHSLAVTRDGQVWAWGENSEGQLGL 314

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA--CGGRHTLAIV 366
           G       P +V                  ++ +VA   GG HTLA+ 
Sbjct: 315 GDLWDRDAPQKVEA----------------LSNVVAINAGGDHTLALT 346



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 141/326 (43%), Gaps = 76/326 (23%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHS 146
           +AV   G  + WGGN+ G+ G        TG     D  +P + +    V  +A G  HS
Sbjct: 1   MAVTQGGALWTWGGNDDGRLGIGA-----TG-----DQNLPVQLSYLSNVVSLAGGEKHS 50

Query: 147 VVLTREGHVWTWG---------------------QPWPPGDIKQISVPVRVQGL------ 179
           + ++ +G VW+WG                          GD   +       G       
Sbjct: 51  LAVSGDGSVWSWGSNSAGQLGVESLTPASVLAPVHALYSGDDFHLFYDTDGDGTGDICDD 110

Query: 180 ----------------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                             V ++A G   +L L+ DG +W+WG N Y  LG GD   R+ P
Sbjct: 111 CPYDPFKTAPGLSGCGNAVPMLAAGTQFSLGLKTDGTVWSWGCNTYATLGLGDRVDRNTP 170

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNL 282
             V+ LS    V +AAG  H+ ALT DG V+ WG   +G+LG G  ++ + +  P+KV  
Sbjct: 171 QKVEALS--NAVALAAGDDHTLALTRDGSVWSWGWNYNGQLGLGSIHEDTYESTPKKVEA 228

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           ++  ++  ++    H+ ALTRDG+++S+G  D G+LG G +     P +V          
Sbjct: 229 IS--NVTAIAAQTYHTQALTRDGNVWSWGSNDFGQLGMGDQNDRDAPQKVEA-------- 278

Query: 343 GDGVDRRWIAKLVA--CGGRHTLAIV 366
                   ++ +VA   GG H+LA+ 
Sbjct: 279 --------LSNVVAINAGGNHSLAVT 296


>gi|297673957|ref|XP_002815007.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Pongo abelii]
          Length = 1050

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G +G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSYGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 164/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G +G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSYGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALASD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SYG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSYGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|326923406|ref|XP_003207927.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Meleagris gallopavo]
          Length = 1048

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 182/395 (46%), Gaps = 56/395 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        +R V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K    P  V AL    IV  + G  H LA++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +   ++ + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLPGTEECIR-------VPRNI----KSLSEIQIVQVACGYYHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     + K+ + P  ++ L  +    IA G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGYEYKKQNSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDDNDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTV 341

Query: 333 PIN-IPAPRNAGDGVD--RRWIAKLVACGGRHTLA 364
             N +P         D  + +  K +  GG  + A
Sbjct: 342 KGNWLPYSTQCLIPADSEQYYCVKRIFSGGDQSFA 376



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 66/243 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKYGQLGLGY-----------------------------------EYK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +N P  + +L      Q A GG H   +   G  + WG N++GQ G      DD  R +
Sbjct: 177 KQNSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----LNDDNDRYV 232

Query: 121 RRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIK 168
                      P L+       V  +  G  H+  LT+EG V+T     +GQ        
Sbjct: 233 -----------PTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSH 281

Query: 169 QISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           +I+ P +V  L    V  I  G  H  A     G ++++G    GQLGTG T  R  P  
Sbjct: 282 EIN-PRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFT 340

Query: 226 VQG 228
           V+G
Sbjct: 341 VKG 343



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+ ++ +R    ++K+L   KV  +  G  ++ A+  +G        
Sbjct: 210 AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                    T  E  P +V  L  + + Q   G  H  A V   GR Y++G    GQ G 
Sbjct: 270 GYGQLGHNSTSHEINPRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGT 329

Query: 109 EPERKDDTGRILR-------RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  +   ++          +IP        V+++ +GG  S       H +     
Sbjct: 330 GTTSNRKSPFTVKGNWLPYSTQCLIPADSEQYYCVKRIFSGGDQSF-----AHYFYPQNM 384

Query: 162 WPPGDIK 168
            PP D +
Sbjct: 385 VPPDDFR 391


>gi|405345706|ref|ZP_11022499.1| RCC1 repeat domain protein [Chondromyces apiculatus DSM 436]
 gi|397093755|gb|EJJ24452.1| RCC1 repeat domain protein [Myxococcus sp. (contaminant ex DSM
           436)]
          Length = 747

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 165/344 (47%), Gaps = 41/344 (11%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           AWG    GQLG G  +       V       + SV +G R++ A+  DG           
Sbjct: 422 AWGDNNQGQLGNGTQQNSSLPLPVNLT---GITSVSSGHRHTAALRLDGTVWSWGTNQYG 478

Query: 59  -----TKTE-NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                T+T+ + P QV  L  T +   A G +H LA+   G  + WG N YGQ G+    
Sbjct: 479 QLGDGTRTDRSTPVQVPGL--TGVTSIATGDYHSLALRSNGTVWGWGFNRYGQLGDGTTV 536

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK 168
                     D   P + +    +  +AAGG HS+ L  +G VW +G  +      G   
Sbjct: 537 ----------DRTQPVQVSGLTNIVSIAAGGGHSLALRSDGTVWAFGYNFDGQLGNGTRT 586

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              +PV+  GL  V  +A G  ++LAL+ DG +WAWG N  GQLG G TQ  + P+ V G
Sbjct: 587 WTILPVQAVGLGNVVSLAAGKMYSLALRADGTVWAWGYNASGQLGVGTTQGSAVPLQVSG 646

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           LS +T   I AG +HS AL  DG V+ WG    G+LG G +D   ++ P  V  ++  + 
Sbjct: 647 LSAIT--SITAGTYHSLALRSDGWVWAWGFNFEGQLGNGTSDN--RLTPGLV--VSMSNA 700

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  G  HS+A+  DG ++++G   HG+LG G  V    P++V
Sbjct: 701 TAIFAGDLHSLAVRADGTLWAWGLNSHGQLGTGDTVEAWFPVQV 744



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 159/352 (45%), Gaps = 50/352 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG     QLG            V  L    + +VVAG  +SLA+            
Sbjct: 170 TVWAWGDNRSNQLGSATLTRSPVPIPVPGLS--DIVAVVAGGSSSLALRADGTVWAWGDN 227

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P +V  L    +   + G +H LA+   G A+AWG N +GQ G  
Sbjct: 228 RYGQLGDGTTVRRAAPVRVANLD--AVTHISAGAYHALALRADGTAWAWGYNAFGQLG-- 283

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWG----QP 161
                        D    QR  P LI     R V AG  HS+ +  +G VW WG    + 
Sbjct: 284 -------------DGTTVQRTLPVLIGLTETRTVVAGNYHSLAVRTDGAVWAWGDNRYRQ 330

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G++   +VP+       V L+A G  H++AL  DG  W+WG+N +GQLG    QPR 
Sbjct: 331 LGTGNLTSSAVPLHAGMTGGVTLVA-GFRHSVALGADGTAWSWGDNVFGQLGDTTFQPRM 389

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ V GL+ L   D  +G  H+  L  +G ++ WG    G+LG G    SS  +P  VN
Sbjct: 390 APVQVTGLA-LGRADATSGQLHTVMLGANGRLWAWGDNNQGQLGNGTQQNSS--LPLPVN 446

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           L     I  VS G  H+ AL  DG ++S+G   +G+LG G +     P++VP
Sbjct: 447 L---TGITSVSSGHRHTAALRLDGTVWSWGTNQYGQLGDGTRTDRSTPVQVP 495



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 181/382 (47%), Gaps = 68/382 (17%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------- 57
           AWG    GQLG G   +R    ++   E    R+VVAG+ +SLA+  DG           
Sbjct: 273 AWGYNAFGQLGDGTTVQRTLPVLIGLTE---TRTVVAGNYHSLAVRTDGAVWAWGDNRYR 329

Query: 58  KTKTENIPSQVNAL--SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPE- 111
           +  T N+ S    L    T  V    G  H +A+   G A++WG N +GQ G+   +P  
Sbjct: 330 QLGTGNLTSSAVPLHAGMTGGVTLVAGFRHSVALGADGTAWSWGDNVFGQLGDTTFQPRM 389

Query: 112 -----------RKDDTGRILRRDIV--------------------IPQRCAPKLIVR--- 137
                      R D T   L   ++                      Q  +  L V    
Sbjct: 390 APVQVTGLALGRADATSGQLHTVMLGANGRLWAWGDNNQGQLGNGTQQNSSLPLPVNLTG 449

Query: 138 --QVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQI--SVPVRVQGLEQVKLIAVGAFH 191
              V++G  H+  L  +G VW+WG  Q    GD  +   S PV+V GL  V  IA G +H
Sbjct: 450 ITSVSSGHRHTAALRLDGTVWSWGTNQYGQLGDGTRTDRSTPVQVPGLTGVTSIATGDYH 509

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +LAL+ +G +W WG N YGQLG G T  R+QP+ V GL+   +V IAAGG HS AL  DG
Sbjct: 510 SLALRSNGTVWGWGFNRYGQLGDGTTVDRTQPVQVSGLT--NIVSIAAGGGHSLALRSDG 567

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVP-QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            V+ +G    G+LG G   ++  ++P Q V L    ++V ++ G  +S+AL  DG ++++
Sbjct: 568 TVWAFGYNFDGQLGNG--TRTWTILPVQAVGL---GNVVSLAAGKMYSLALRADGTVWAW 622

Query: 311 GRGDHGRLGYGRKVTTGQPMEV 332
           G    G+LG G    +  P++V
Sbjct: 623 GYNASGQLGVGTTQGSAVPLQV 644



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 163/352 (46%), Gaps = 48/352 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           ++ AWG    GQLG G  +++     V+        SV AG + SLA+ +          
Sbjct: 70  TVFAWGFNRLGQLGDGTTQDKA--APVQVAGVASAVSVAAGDQYSLALDENGDVWAWGDN 127

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG       P +V+ L  T+ V  A G  H +A+   G  +AWG N   Q G  
Sbjct: 128 ASGQLGDGTLTPRAQPRRVSGL--TQGVSLASGFAHAVALRADGTVWAWGDNRSNQLGSA 185

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                    + R  + IP      ++   V AGG+ S+ L  +G VW WG         G
Sbjct: 186 T--------LTRSPVPIPVPGLSDIVA--VVAGGSSSLALRADGTVWAWGDNRYGQLGDG 235

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              + + PVRV  L+ V  I+ GA+H LAL+ DG  WAWG N +GQLG G T  R+ P+ 
Sbjct: 236 TTVRRAAPVRVANLDAVTHISAGAYHALALRADGTAWAWGYNAFGQLGDGTTVQRTLPV- 294

Query: 226 VQGLSGLTLV-DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
              L GLT    + AG +HS A+  DG V+ WG   + +LG G  + +S  VP    +  
Sbjct: 295 ---LIGLTETRTVVAGNYHSLAVRTDGAVWAWGDNRYRQLGTG--NLTSSAVPLHAGMTG 349

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           G  +V    G  HSVAL  DG  +S+G    G+LG     TT QP   P+ +
Sbjct: 350 GVTLV---AGFRHSVALGADGTAWSWGDNVFGQLGD----TTFQPRMAPVQV 394



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 176/377 (46%), Gaps = 52/377 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--ENI 64
           + AWG    GQLG G    R     V  L   +  S+ +G  +++A+  DG      +N 
Sbjct: 121 VWAWGDNASGQLGDGTLTPRAQPRRVSGLT--QGVSLASGFAHAVALRADGTVWAWGDNR 178

Query: 65  PSQVNALSNTK------------IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
            +Q+ + + T+            IV    GG   LA+   G  +AWG N YGQ G+    
Sbjct: 179 SNQLGSATLTRSPVPIPVPGLSDIVAVVAGGSSSLALRADGTVWAWGDNRYGQLGD---- 234

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
               G  +RR    P R A    V  ++AG  H++ L  +G  W WG         G   
Sbjct: 235 ----GTTVRR--AAPVRVANLDAVTHISAGAYHALALRADGTAWAWGYNAFGQLGDGTTV 288

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           Q ++PV + GL + + +  G +H+LA++ DGA+WAWG+N Y QLGTG+    + P+    
Sbjct: 289 QRTLPVLI-GLTETRTVVAGNYHSLAVRTDGAVWAWGDNRYRQLGTGNLTSSAVPLHAGM 347

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
             G+TLV   AG  HS AL  DG  + WG    G+L  GD     +M P +V  LA    
Sbjct: 348 TGGVTLV---AGFRHSVALGADGTAWSWGDNVFGQL--GDTTFQPRMAPVQVTGLA-LGR 401

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
              + G  H+V L  +G ++++G  + G+LG G +  +  P+  P+N+    +       
Sbjct: 402 ADATSGQLHTVMLGANGRLWAWGDNNQGQLGNGTQQNSSLPL--PVNLTGITS------- 452

Query: 349 RWIAKLVACGGRHTLAI 365
                 V+ G RHT A+
Sbjct: 453 ------VSSGHRHTAAL 463



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 23/302 (7%)

Query: 34  ALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
           +L  +   +V A   N L    DG T+ +  P QV  +++   V  A G  + LA+D+ G
Sbjct: 62  SLAVHSEGTVFAWGFNRLGQLGDGTTQDKAAPVQVAGVASA--VSVAAGDQYSLALDENG 119

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
             +AWG N  GQ G+        G +  R    P+R +       +A+G  H+V L  +G
Sbjct: 120 DVWAWGDNASGQLGD--------GTLTPR--AQPRRVSGLTQGVSLASGFAHAVALRADG 169

Query: 154 HVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
            VW WG           + +  VP+ V GL  +  +  G   +LAL+ DG +WAWG+N Y
Sbjct: 170 TVWAWGDNRSNQLGSATLTRSPVPIPVPGLSDIVAVVAGGSSSLALRADGTVWAWGDNRY 229

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG G T  R+ P+ V  L  +T   I+AG +H+ AL  DG  + WG    G+L  GD 
Sbjct: 230 GQLGDGTTVRRAAPVRVANLDAVT--HISAGAYHALALRADGTAWAWGYNAFGQL--GDG 285

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
               + +P  + L     +V    G  HS+A+  DG ++++G   + +LG G   ++  P
Sbjct: 286 TTVQRTLPVLIGLTETRTVV---AGNYHSLAVRTDGAVWAWGDNRYRQLGTGNLTSSAVP 342

Query: 330 ME 331
           + 
Sbjct: 343 LH 344



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 137/293 (46%), Gaps = 35/293 (11%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V+ A+G +H LAV  +G  +AWG N  GQ G+             +D   P + A     
Sbjct: 53  VRLAVGQYHSLAVHSEGTVFAWGFNRLGQLGDGTT----------QDKAAPVQVAGVASA 102

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
             VAAG  +S+ L   G VW WG         G +   + P RV GL Q   +A G  H 
Sbjct: 103 VSVAAGDQYSLALDENGDVWAWGDNASGQLGDGTLTPRAQPRRVSGLTQGVSLASGFAHA 162

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           +AL+ DG +WAWG+N   QLG+        PIPV GLS   +V + AGG  S AL  DG 
Sbjct: 163 VALRADGTVWAWGDNRSNQLGSATLTRSPVPIPVPGLS--DIVAVVAGGSSSLALRADGT 220

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG   +G+L  GD     +  P +V  L  + +  +S G  H++AL  DG  +++G 
Sbjct: 221 VWAWGDNRYGQL--GDGTTVRRAAPVRVANL--DAVTHISAGAYHALALRADGTAWAWGY 276

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              G+LG G  V   + + V I +   R              V  G  H+LA+
Sbjct: 277 NAFGQLGDGTTVQ--RTLPVLIGLTETRT-------------VVAGNYHSLAV 314



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 15/231 (6%)

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
           CG +  ++ D+     R     QR   +L   ++A G  HS+ +  EG V+ WG      
Sbjct: 27  CGVDAVQERDSATETVR-----QRAGARLPPVRLAVGQYHSLAVHSEGTVFAWGFNRLGQ 81

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G  +  + PV+V G+     +A G  ++LAL E+G +WAWG+N  GQLG G   PR+
Sbjct: 82  LGDGTTQDKAAPVQVAGVASAVSVAAGDQYSLALDENGDVWAWGDNASGQLGDGTLTPRA 141

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           QP  V GL+    V +A+G  H+ AL  DG V+ WG     +LG     +S    P  + 
Sbjct: 142 QPRRVSGLT--QGVSLASGFAHAVALRADGTVWAWGDNRSNQLGSATLTRS----PVPIP 195

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +    DIV V  GG+ S+AL  DG ++++G   +G+LG G  V    P+ V
Sbjct: 196 VPGLSDIVAVVAGGSSSLALRADGTVWAWGDNRYGQLGDGTTVRRAAPVRV 246



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 107/249 (42%), Gaps = 34/249 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++  WG    GQLG G   +R     V  L    + S+ AG  +SLA+  DG   
Sbjct: 513 LRSNGTVWGWGFNRYGQLGDGTTVDRTQPVQVSGLT--NIVSIAAGGGHSLALRSDGTVW 570

Query: 59  -------------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T+T  I P Q   L N  +V  A G  + LA+   G  +AWG N  G
Sbjct: 571 AFGYNFDGQLGNGTRTWTILPVQAVGLGN--VVSLAAGKMYSLALRADGTVWAWGYNASG 628

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G    +             +P + +    +  + AG  HS+ L  +G VW WG  +  
Sbjct: 629 QLGVGTTQGS----------AVPLQVSGLSAITSITAGTYHSLALRSDGWVWAWGFNFEG 678

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G       P  V  +     I  G  H+LA++ DG LWAWG N +GQLGTGDT   
Sbjct: 679 QLGNGTSDNRLTPGLVVSMSNATAIFAGDLHSLAVRADGTLWAWGLNSHGQLGTGDTVEA 738

Query: 221 SQPIPVQGL 229
             P+ VQGL
Sbjct: 739 WFPVQVQGL 747


>gi|442319690|ref|YP_007359711.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441487332|gb|AGC44027.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 747

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 183/385 (47%), Gaps = 65/385 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR-----SVVAGSRNSLAICDDGKTK 60
           ++ AWG     QLG GN        +  +L P +       ++VAG ++SL +  DG   
Sbjct: 319 AVWAWGDNRYRQLGNGN--------MTSSLLPIQAGLSGGITLVAGFKHSLTLRADGTVW 370

Query: 61  T--ENIPSQVN------ALSNTKIVQAAIGG-------WHCLAVDDQGRAYAWGGNEYGQ 105
           +  +N+  Q+        +S  ++    +G         H +  D  GR ++WG NE GQ
Sbjct: 371 SWGDNVFGQLGDGTYQPRMSPVRVATTTLGNPGVASGQLHSVYRDSAGRVWSWGDNEDGQ 430

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QP 161
            G            +  D + P        V  V AG  H+VVL  +  VW WG      
Sbjct: 431 LGNG----------IGADKLTPALTGLTGAV-SVVAGNRHTVVLKGDTTVWAWGVNSRGE 479

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G     S PVRV GL  +  I+ GA+H+LAL+ DG +WAWG N YGQLG G T  ++
Sbjct: 480 VGDGTNANTSQPVRVLGLSGITAISAGAYHSLALRTDGTVWAWGFNRYGQLGNGGTVDQN 539

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP-QKV 280
           QP+ V GLSG+T   IAAG  HS AL  DG V+ WG    G++G G N+    ++P Q V
Sbjct: 540 QPVQVAGLSGVTA--IAAGHSHSLALCGDGTVWAWGYNFDGQIGSGTNNW--HILPVQAV 595

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            L     +  ++ GG HS+AL  DG ++S+G    G+LG G   +        +N P P 
Sbjct: 596 GL---SSVTAITAGGYHSLALRSDGTVWSWGYNGSGQLGNGALAS--------LNAPGPV 644

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
           +   GV        +A G  H+LA+
Sbjct: 645 SNLTGVVS------IAAGDYHSLAL 663



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 165/347 (47%), Gaps = 39/347 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDD--------- 56
           + +WG  EDGQLG G   ++    +  AL       SVVAG+R+++ +  D         
Sbjct: 420 VWSWGDNEDGQLGNGIGADK----LTPALTGLTGAVSVVAGNRHTVVLKGDTTVWAWGVN 475

Query: 57  -----GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                G     N    V  L  + I   + G +H LA+   G  +AWG N YGQ G    
Sbjct: 476 SRGEVGDGTNANTSQPVRVLGLSGITAISAGAYHSLALRTDGTVWAWGFNRYGQLGNGGT 535

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
              +           P + A    V  +AAG +HS+ L  +G VW WG  +      G  
Sbjct: 536 VDQNQ----------PVQVAGLSGVTAIAAGHSHSLALCGDGTVWAWGYNFDGQIGSGTN 585

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
               +PV+  GL  V  I  G +H+LAL+ DG +W+WG N  GQLG G     + P PV 
Sbjct: 586 NWHILPVQAVGLSSVTAITAGGYHSLALRSDGTVWSWGYNGSGQLGNGALASLNAPGPVS 645

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L+G+  V IAAG +HS AL  DG V  WG    G++G  D   +++ VP  V  ++G  
Sbjct: 646 NLTGV--VSIAAGDYHSLALRSDGTVRAWGFNFDGQIG--DGSLTNRHVPVMVAGMSG-- 699

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           +V V  G  HS+A+  DG  +++G    G+LG G +  +  P+ V +
Sbjct: 700 VVSVIAGDHHSMAMRSDGTTWAWGANTEGQLGDGTRNDSIIPVRVEL 746



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 132/278 (47%), Gaps = 21/278 (7%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
            N P+ V   + T  V  A G  H LA+   G  +AWG N  GQ G              
Sbjct: 88  TNSPTPVKVKNLTDAVAVASGDSHSLALRSDGTVWAWGDNYSGQLGTGSTAVSAE----- 142

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQ 177
                P +      V  VA+G  HS  L  +G VW WG    +   P      SVPV+V 
Sbjct: 143 -----PVQVQGLSGVLSVASGFAHSAALRSDGTVWAWGDNRYRQLGPLTAGSSSVPVQVP 197

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           GL  V  +A G    LAL+ DG +WAWG+N  GQLG G    R  P+ V GL+G  +V +
Sbjct: 198 GLGGVIAVAAGGNTTLALRADGTVWAWGDNRSGQLGDGTVTTRGNPLQVLGLTG--VVTL 255

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           +AG  H  AL  +G  + WG    G+L  GD   + + VP +V L    D++    G  H
Sbjct: 256 SAGASHCVALRSNGTAWTWGLNTMGQL--GDGTTTQRSVPAQVGL---TDVMAAVAGNYH 310

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           S+A+  DG ++++G   + +LG G   ++  P++  ++
Sbjct: 311 SLAVRSDGAVWAWGDNRYRQLGNGNMTSSLLPIQAGLS 348



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 155/352 (44%), Gaps = 48/352 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           S+ AWG    GQLG G          VK L      +V +G  +SLA+  D         
Sbjct: 70  SVWAWGFNRQGQLGNGLFTNSPTPVKVKNLT--DAVAVASGDSHSLALRSDGTVWAWGDN 127

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G T     P QV  LS   ++  A G  H  A+   G  +AWG N Y Q G  
Sbjct: 128 YSGQLGTGSTAVSAEPVQVQGLSG--VLSVASGFAHSAALRSDGTVWAWGDNRYRQLGPL 185

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                           +P +      V  VAAGG  ++ L  +G VW WG         G
Sbjct: 186 TAGSSS----------VPVQVPGLGGVIAVAAGGNTTLALRADGTVWAWGDNRSGQLGDG 235

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            +     P++V GL  V  ++ GA H +AL+ +G  W WG N  GQLG G T  RS P  
Sbjct: 236 TVTTRGNPLQVLGLTGVVTLSAGASHCVALRSNGTAWTWGLNTMGQLGDGTTTQRSVPAQ 295

Query: 226 VQGLSGLTLVDIA-AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           V    GLT V  A AG +HS A+  DG V+ WG   + +LG G  + +S ++P +  L  
Sbjct: 296 V----GLTDVMAAVAGNYHSLAVRSDGAVWAWGDNRYRQLGNG--NMTSSLLPIQAGLSG 349

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           G  +V    G  HS+ L  DG ++S+G    G+LG G    T QP   P+ +
Sbjct: 350 GITLV---AGFKHSLTLRADGTVWSWGDNVFGQLGDG----TYQPRMSPVRV 394



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 137/299 (45%), Gaps = 38/299 (12%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           T++ AWG    G++G G N        V+ L    + ++ AG+ +SLA+  DG       
Sbjct: 467 TTVWAWGVNSRGEVGDGTNANTS--QPVRVLGLSGITAISAGAYHSLALRTDGTVWAWGF 524

Query: 59  ----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     T  +N P QV  LS    + A  G  H LA+   G  +AWG N  GQ G 
Sbjct: 525 NRYGQLGNGGTVDQNQPVQVAGLSGVTAIAA--GHSHSLALCGDGTVWAWGYNFDGQIGS 582

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                           ++P +      V  + AGG HS+ L  +G VW+WG         
Sbjct: 583 GTNNWH----------ILPVQAVGLSSVTAITAGGYHSLALRSDGTVWSWGYNGSGQLGN 632

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G +  ++ P  V  L  V  IA G +H+LAL+ DG + AWG N  GQ+G G    R  P+
Sbjct: 633 GALASLNAPGPVSNLTGVVSIAAGDYHSLALRSDGTVRAWGFNFDGQIGDGSLTNRHVPV 692

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            V G+SG  +V + AG  HS A+  DG  + WG    G+L  GD  ++  ++P +V L 
Sbjct: 693 MVAGMSG--VVSVIAGDHHSMAMRSDGTTWAWGANTEGQL--GDGTRNDSIIPVRVELF 747



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 152/341 (44%), Gaps = 41/341 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ AWG    GQLG G+         V+ L    V SV +G  +S A+  DG   
Sbjct: 115 LRSDGTVWAWGDNYSGQLGTGSTAVSAEPVQVQGLS--GVLSVASGFAHSAALRSDGTVW 172

Query: 60  ---------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                           + ++P QV  L    ++  A GG   LA+   G  +AWG N  G
Sbjct: 173 AWGDNRYRQLGPLTAGSSSVPVQVPGLGG--VIAVAAGGNTTLALRADGTVWAWGDNRSG 230

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+        G +  R    P +      V  ++AG +H V L   G  WTWG     
Sbjct: 231 QLGD--------GTVTTRGN--PLQVLGLTGVVTLSAGASHCVALRSNGTAWTWGLNTMG 280

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   Q SVP +V GL  V     G +H+LA++ DGA+WAWG+N Y QLG G+    
Sbjct: 281 QLGDGTTTQRSVPAQV-GLTDVMAAVAGNYHSLAVRSDGAVWAWGDNRYRQLGNGNMTSS 339

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             PI      G+TLV   AG  HS  L  DG V+ WG    G+L  GD     +M P +V
Sbjct: 340 LLPIQAGLSGGITLV---AGFKHSLTLRADGTVWSWGDNVFGQL--GDGTYQPRMSPVRV 394

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
                 +   V+ G  HSV     G ++S+G  + G+LG G
Sbjct: 395 ATTTLGN-PGVASGQLHSVYRDSAGRVWSWGDNEDGQLGNG 434



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 20/221 (9%)

Query: 126 IPQRCAP----------KLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQIS 171
           +PQ  AP          +  V +++ G  HSV +  +G VW WG         G      
Sbjct: 32  LPQARAPVDQTRAALAGRASVARLSLGQYHSVGVHSDGSVWAWGFNRQGQLGNGLFTNSP 91

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+V+ L     +A G  H+LAL+ DG +WAWG+N  GQLGTG T   ++P+ VQGLSG
Sbjct: 92  TPVKVKNLTDAVAVASGDSHSLALRSDGTVWAWGDNYSGQLGTGSTAVSAEPVQVQGLSG 151

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             ++ +A+G  HS AL  DG V+ WG   + +L  G     S  VP +V  L G  ++ V
Sbjct: 152 --VLSVASGFAHSAALRSDGTVWAWGDNRYRQL--GPLTAGSSSVPVQVPGLGG--VIAV 205

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + GG  ++AL  DG ++++G    G+LG G   T G P++V
Sbjct: 206 AAGGNTTLALRADGTVWAWGDNRSGQLGDGTVTTRGNPLQV 246



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 166 DIKQISVPV-----RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
           D+ Q   PV      + G   V  +++G +H++ +  DG++WAWG N  GQLG G     
Sbjct: 31  DLPQARAPVDQTRAALAGRASVARLSLGQYHSVGVHSDGSVWAWGFNRQGQLGNGLFTNS 90

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V+ L+    V +A+G  HS AL  DG V+ WG    G+LG G    S++  P +V
Sbjct: 91  PTPVKVKNLT--DAVAVASGDSHSLALRSDGTVWAWGDNYSGQLGTGSTAVSAE--PVQV 146

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             L+G  ++ V+ G  HS AL  DG ++++G   + +LG     ++  P++VP
Sbjct: 147 QGLSG--VLSVASGFAHSAALRSDGTVWAWGDNRYRQLGPLTAGSSSVPVQVP 197



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 30/146 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ +WG    GQLG G          V  L    V S+ AG  +SLA+  DG  +
Sbjct: 613 LRSDGTVWSWGYNGSGQLGNGALASLNAPGPVSNLT--GVVSIAAGDYHSLALRSDGTVR 670

Query: 61  ----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                             ++P  V  +S   +V    G  H +A+   G  +AWG N  G
Sbjct: 671 AWGFNFDGQIGDGSLTNRHVPVMVAGMSG--VVSVIAGDHHSMAMRSDGTTWAWGANTEG 728

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRC 130
           Q G+            R D +IP R 
Sbjct: 729 QLGDGT----------RNDSIIPVRV 744


>gi|408681156|ref|YP_006880983.1| LPXTG-motif cell wall anchor domain [Streptomyces venezuelae ATCC
           10712]
 gi|328885485|emb|CCA58724.1| LPXTG-motif cell wall anchor domain [Streptomyces venezuelae ATCC
           10712]
          Length = 408

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 174/357 (48%), Gaps = 46/357 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAG---SRNSLAICDDGKT--- 59
           ++++WG+G  GQLG G   +      V +L    V  + AG   S +S A+    KT   
Sbjct: 46  TVLSWGAGRTGQLGNGTLSDSLSPSSVTSLFRGDVDQMSAGGTSSADSFALARTDKTVKS 105

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                           + +P+ V  L++ K V  A GG H LA+D  G+ Y+WG N YGQ
Sbjct: 106 WGHNSSGQLGNGGNTNQTVPTTVPRLTDIKDV--AAGGKHALALDTSGQVYSWGDNSYGQ 163

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G    R  D+         +P R      V+Q++AG   S+ L   G V+ WG+     
Sbjct: 164 LGN--NRTGDS-------RTVPDRVQGMPKVKQISAGCDFSLALLENGKVYAWGRGIHGQ 214

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G+    SVP +VQGLE +  I  G +H LAL  D  + +WG N YGQLG   T+  +
Sbjct: 215 LGTGNRATSSVPRQVQGLENIVEIDAGCYHALALTADDTVKSWGYNLYGQLGNSSTKSST 274

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL-----GFGDN-DKSSKM 275
            P+ V  + G++  DI AG +H+   T D  V+GWG  ++G+L      F  N  ++++ 
Sbjct: 275 LPVDVDWIEGVS--DIEAGAFHNYVKTSDSHVWGWGNNQYGQLLESDEAFDANVSRTNRT 332

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            P ++  L G  +  ++ G  H VA+T D  +F++G    G+LG G  V   + +++
Sbjct: 333 APVEIPRLEG--VQHLAAGARHGVAVTAD-DVFTWGHNGEGQLGNGTTVARYESVKI 386



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 50/117 (42%), Gaps = 20/117 (17%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH---SVALTR-DGHIF 308
           V  WG G  G+LG G    S  + P  V  L   D+ Q+S GGT    S AL R D  + 
Sbjct: 47  VLSWGAGRTGQLGNG--TLSDSLSPSSVTSLFRGDVDQMSAGGTSSADSFALARTDKTVK 104

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           S+G    G+LG G       P  VP              R    K VA GG+H LA+
Sbjct: 105 SWGHNSSGQLGNGGNTNQTVPTTVP--------------RLTDIKDVAAGGKHALAL 147


>gi|326923408|ref|XP_003207928.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Meleagris gallopavo]
          Length = 1056

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 182/395 (46%), Gaps = 56/395 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        +R V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K    P  V AL    IV  + G  H LA++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +   ++ + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLPGTEECIR-------VPRNI----KSLSEIQIVQVACGYYHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     + K+ + P  ++ L  +    IA G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGYEYKKQNSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDDNDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTV 341

Query: 333 PIN-IPAPRNAGDGVD--RRWIAKLVACGGRHTLA 364
             N +P         D  + +  K +  GG  + A
Sbjct: 342 KGNWLPYSTQCLIPADSEQYYCVKRIFSGGDQSFA 376



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 66/243 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKYGQLGLGY-----------------------------------EYK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +N P  + +L      Q A GG H   +   G  + WG N++GQ G      DD  R +
Sbjct: 177 KQNSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----LNDDNDRYV 232

Query: 121 RRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIK 168
                      P L+       V  +  G  H+  LT+EG V+T     +GQ        
Sbjct: 233 -----------PTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSH 281

Query: 169 QISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           +I+ P +V  L    V  I  G  H  A     G ++++G    GQLGTG T  R  P  
Sbjct: 282 EIN-PRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFT 340

Query: 226 VQG 228
           V+G
Sbjct: 341 VKG 343



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+ ++ +R    ++K+L   KV  +  G  ++ A+  +G        
Sbjct: 210 AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                    T  E  P +V  L  + + Q   G  H  A V   GR Y++G    GQ G 
Sbjct: 270 GYGQLGHNSTSHEINPRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGT 329

Query: 109 EPERKDDTGRILR-------RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  +   ++          +IP        V+++ +GG  S       H +     
Sbjct: 330 GTTSNRKSPFTVKGNWLPYSTQCLIPADSEQYYCVKRIFSGGDQSF-----AHYFYPQNM 384

Query: 162 WPPGDIK 168
            PP D +
Sbjct: 385 VPPDDFR 391


>gi|307204521|gb|EFN83201.1| Probable E3 ubiquitin-protein ligase HERC2 [Harpegnathos saltator]
          Length = 4791

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 51/394 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     ++L   +   +  G +   A+  DGK       
Sbjct: 3933 AIYGWGHNHRGQLGGLEGAKIKLPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTGYG 3992

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 3993 AAGRLGIGGTDSVMVPTLLESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 4052

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  +++   + I         +  +A GG HS  +T  G ++TWG+       
Sbjct: 4053 HGNRLSYDRPKLVEDLLGIE--------IVDIACGGHHSAAITSAGWLYTWGKGRYGRLG 4104

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V+ L+  K+I V    G    L + +D  +W+WG+ +YG+LG G +  
Sbjct: 4105 HGDSDDQLRPKVVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKLGRGGSDG 4164

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL ++ +  G   S ALT  G VY WG+G++ RLG G +D   +  P+K
Sbjct: 4165 CKVPLKIDSLAGLGVIKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRR--PRK 4222

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G    T   ++ P  + A 
Sbjct: 4223 VAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEGQLGDG----TTSALQRPRLVHAL 4278

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            +  G  + R      VACG  HTLA   W T ++
Sbjct: 4279 Q--GKKITR------VACGSAHTLA---WSTAKA 4301



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 162/322 (50%), Gaps = 46/322 (14%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             IP +   LS  K +  A G      V  +G+ YA G    G+ G      DD       
Sbjct: 2973 KIPVRSEVLSKLKPIHIAGGSKTLFIVSQEGKLYACGEGTNGRLG----LGDDYNM---- 3024

Query: 123  DIVIPQRCAPKLI-------VRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
                   C PKLI       +++VA  +GG H++ LT++G V++WG+        G+   
Sbjct: 3025 -------CEPKLIPFLSQYVIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNCTT 3077

Query: 170  ISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            +  P  ++ L+  +++ IA G+ H+ A+  +G L+ WG  EYG+LG GDT  + +P  VQ
Sbjct: 3078 LDKPRLIESLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDTATQMKPKLVQ 3137

Query: 228  GLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
             LSG  +V +A G     + +LT DG VY WG G+ G+LG G +D      P  V+ L G
Sbjct: 3138 ALSGQRVVQVACGSRDAQTMSLTADGCVYTWGDGDFGKLGRGGSDGC--YTPLLVDRLNG 3195

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
              +VQV CG   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G
Sbjct: 3196 LGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EG 3244

Query: 346  VDRRWIAKLVACGGRHTLAIVE 367
            +  + I   VA G  H LA+ +
Sbjct: 3245 LRGKKIVH-VAVGALHCLAVTD 3265



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 36/289 (12%)

Query: 92   QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVL 149
            Q   Y WG N+          KD  G +    I IP R     KL    +A G     ++
Sbjct: 2950 QSAVYVWGLND----------KDQLGGLKGSKIKIPVRSEVLSKLKPIHIAGGSKTLFIV 2999

Query: 150  TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            ++EG ++  G+        GD   +  P  +  L Q  +K +AV  G  H LAL +DG +
Sbjct: 3000 SQEGKLYACGEGTNGRLGLGDDYNMCEPKLIPFLSQYVIKKVAVHSGGKHALALTQDGKV 3059

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  E G+LG G+     +P  ++ L    + DIA G  HS A+  +GE+Y WG GE+
Sbjct: 3060 FSWGEGEDGKLGHGNCTTLDKPRLIESLKSKRIRDIACGSGHSAAIASNGELYTWGLGEY 3119

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GD   +++M P+ V  L+G+ +VQV+CG     +++LT DG ++++G GD G+LG
Sbjct: 3120 GRLGHGDT--ATQMKPKLVQALSGQRVVQVACGSRDAQTMSLTADGCVYTWGDGDFGKLG 3177

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             G       P+ V       R  G GV +      V CG + +LA+ ++
Sbjct: 3178 RGGSDGCYTPLLV------DRLNGLGVVQ------VECGAQFSLALTKY 3214



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 157/324 (48%), Gaps = 44/324 (13%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT----- 59
            + A G G +G+LG+G++       ++  L  Y ++ V   +G +++LA+  DGK      
Sbjct: 3005 LYACGEGTNGRLGLGDDYNMCEPKLIPFLSQYVIKKVAVHSGGKHALALTQDGKVFSWGE 3064

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        T + P  + +L + +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3065 GEDGKLGHGNCTTLDKPRLIESLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGH 3124

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPGD 166
                  DT   ++  +V  Q  + + +V QVA G     ++ LT +G V+TWG     GD
Sbjct: 3125 -----GDTATQMKPKLV--QALSGQRVV-QVACGSRDAQTMSLTADGCVYTWGD----GD 3172

Query: 167  IKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
              ++          P+ V  L  + ++ V  GA  +LAL + G +W WG  +Y +LG G+
Sbjct: 3173 FGKLGRGGSDGCYTPLLVDRLNGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGN 3232

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
                 +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G    + K  
Sbjct: 3233 DHHVRKPTLVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTTIVNRK-- 3290

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVA 300
            P  V+ L    + +VSCG +HS+A
Sbjct: 3291 PSLVHELDDTRMNRVSCGSSHSIA 3314



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 130/268 (48%), Gaps = 28/268 (10%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI--- 119
           P ++++ S+  +   A    G H LA+   G  Y+WG  + G+ G       D  ++   
Sbjct: 498 PQRMHSFSDKPVTMIASHSDGKHYLALTQDGCVYSWGNGDGGRLGHGDNISHDEPKLIET 557

Query: 120 -LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            L ++I+             +A G T+S  L+  G ++TWG+        G    ++VP 
Sbjct: 558 LLEKNIIF------------IACGSTYSAALSASGELYTWGRGNYGRLGHGSNDDVTVPT 605

Query: 175 RVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            V  L+   ++ V    G    L +   G +++WG+ +YG+LG G +     P  V  L 
Sbjct: 606 LVTTLKGHMVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGSDGSKTPKIVDKLL 665

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            + +V +  GG  S ALT  GEVY WG+G+  RLG G+ +      P+ +  L  + I  
Sbjct: 666 DINVVRVFCGGQFSAALTARGEVYTWGKGDAYRLGHGNEEHVR--YPKLIESLRDKKIKD 723

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +S GGTH +ALT D  ++ +GR D+G++
Sbjct: 724 LSVGGTHILALTEDQFVYGWGRNDYGQI 751



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 149/346 (43%), Gaps = 65/346 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 4034 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------L 4057

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            + + P  V  L   +IV  A GG H  A+   G  Y WG   YG+ G       D+   L
Sbjct: 4058 SYDRPKLVEDLLGIEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGH-----GDSDDQL 4112

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            R  +V   +   K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 4113 RPKVVEALQ-DYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKV 4167

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P+++  L  + +I V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 4168 PLKIDSLAGLGVIKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRKVAALQ 4227

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A +D GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I +
Sbjct: 4228 GKKIISIATGSLHCVACSDKGEVFTWGDNDEGQL--GDGTTSALQRPRLVHALQGKKITR 4285

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            V+CG  H++A       +S  +    R+     +      E+P ++
Sbjct: 4286 VACGSAHTLA-------WSTAKATQSRMPASAPMEYDLVKEIPFSV 4324



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 82/133 (61%), Gaps = 4/133 (3%)

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H LAL +DG +++WGN + G+LG GD     +P  ++ L    ++ IA G  +S AL+  
Sbjct: 520 HYLALTQDGCVYSWGNGDGGRLGHGDNISHDEPKLIETLLEKNIIFIACGSTYSAALSAS 579

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIF 308
           GE+Y WGRG +GRLG G ND  +  VP  V  L G  +V V+CG   + ++ +T  G +F
Sbjct: 580 GELYTWGRGNYGRLGHGSNDDVT--VPTLVTTLKGHMVVHVACGSGDSQTLCVTASGIVF 637

Query: 309 SFGRGDHGRLGYG 321
           S+G GD+G+LG G
Sbjct: 638 SWGDGDYGKLGRG 650



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 22/237 (9%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           + G H + LT++G V++WG         GD      P  ++ L  + +  IA G+ ++ A
Sbjct: 516 SDGKHYLALTQDGCVYSWGNGDGGRLGHGDNISHDEPKLIETLLEKNIIFIACGSTYSAA 575

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL--TDDGE 252
           L   G L+ WG   YG+LG G     + P  V  L G  +V +A G   S  L  T  G 
Sbjct: 576 LSASGELYTWGRGNYGRLGHGSNDDVTVPTLVTTLKGHMVVHVACGSGDSQTLCVTASGI 635

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG G++G+LG G +D S    P+ V+ L   ++V+V CGG  S ALT  G ++++G+
Sbjct: 636 VFSWGDGDYGKLGRGGSDGSK--TPKIVDKLLDINVVRVFCGGQFSAALTARGEVYTWGK 693

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           GD  RLG+G +    + +  P  I + R+           K ++ GG H LA+ E Q
Sbjct: 694 GDAYRLGHGNE----EHVRYPKLIESLRDKK--------IKDLSVGGTHILALTEDQ 738



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P P + LS L  + +A G     A+T DG+VY  G 
Sbjct: 3932 GAIYGWGHNHRGQLGGLEGAKIKLPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTGY 3991

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S MVP  +  +    I  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 3992 GAAGRLGIGGTD--SVMVPTLLESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 4049

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G +++  +P  V   +       + VD       +ACGG H+ AI
Sbjct: 4050 KLGHGNRLSYDRPKLVEDLL-----GIEIVD-------IACGGHHSAAI 4086



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 32/264 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG+G+ G+LG G+N   +   +++ L    +  +  GS  S A+   G+  T     
Sbjct: 530 VYSWGNGDGGRLGHGDNISHDEPKLIETLLEKNIIFIACGSTYSAALSASGELYTWGRGN 589

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                        +P+ V  L    +V  A G      L V   G  ++WG  +YG+ G 
Sbjct: 590 YGRLGHGSNDDVTVPTLVTTLKGHMVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGR 649

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T +I+ + + I         V +V  GG  S  LT  G V+TWG+        
Sbjct: 650 GGSDGSKTPKIVDKLLDIN--------VVRVFCGGQFSAALTARGEVYTWGKGDAYRLGH 701

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G+ + +  P  ++ L  +++K ++VG  H LAL ED  ++ WG N+YGQ+        S+
Sbjct: 702 GNEEHVRYPKLIESLRDKKIKDLSVGGTHILALTEDQFVYGWGRNDYGQIDPTLGPVVSE 761

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTA 246
           P     LS   ++ +A+G   S A
Sbjct: 762 PSLCPTLSSKNVIGLASGPTQSFA 785



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 26/177 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            +AS   +  WG GE G+LG G+   +    +V+AL   +V  V  GSR+  ++++  DG 
Sbjct: 3105 IASNGELYTWGLGEYGRLGHGDTATQMKPKLVQALSGQRVVQVACGSRDAQTMSLTADGC 3164

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              T                   P  V+ L+   +VQ   G    LA+   G  + WG  +
Sbjct: 3165 VYTWGDGDFGKLGRGGSDGCYTPLLVDRLNGLGVVQVECGAQFSLALTKYGEVWTWGKGD 3224

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y + G   +        +R+  ++      K++   VA G  H + +T  G V+ WG
Sbjct: 3225 YFRLGHGNDHH------VRKPTLVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWG 3273


>gi|86129504|ref|NP_001034387.1| probable E3 ubiquitin-protein ligase HERC3 [Gallus gallus]
 gi|60098971|emb|CAH65316.1| hypothetical protein RCJMB04_17g7 [Gallus gallus]
          Length = 1050

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     + +  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHESEGSKPEPIGALAGQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HSV L+ +G V++WG     Q         ++VP  ++
Sbjct: 85  HIV------------HVACGESHSVALSDQGQVFSWGAGSDGQLGLTTIEDAVTVPRLIK 132

Query: 178 GLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  +  I+ G +H LAL  DG  + WG N YGQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQISCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG+   G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRES---PCHVKLLRSQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG  HTLA V
Sbjct: 291 LMGSEVSQIACGRHHTLAFV 310



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 164/361 (45%), Gaps = 55/361 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY------KVRSVVAGSRNSLAICDDGKTK 60
           ++ WG    GQ GIG+N +     ++   + Y       V+ V  G  +S+ + +DG+  
Sbjct: 1   MLCWGYSSFGQPGIGSNLQ----VIIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY 56

Query: 61  TENI--------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
           T  +              P  + AL+   IV  A G  H +A+ DQG+ ++WG    GQ 
Sbjct: 57  TCGLNTKGQLGHESEGSKPEPIGALAGQHIVHVACGESHSVALSDQGQVFSWGAGSDGQ- 115

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
                     G     D V   R   KL    + Q++ G  H + L  +G  +TWGQ   
Sbjct: 116 ---------LGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWGQ--- 163

Query: 164 PGDIKQISV---------PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
                Q+ +         P RV+ L+ + L  +A G  H+ AL   GA++ WG N  GQL
Sbjct: 164 -NSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQL 222

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G  D + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  +
Sbjct: 223 GLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMN 280

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  
Sbjct: 281 DEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSP 340

Query: 332 V 332
           V
Sbjct: 341 V 341



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 32/280 (11%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTRE 152
            WG + +GQ G         G  L+  ++IP+      I    V++VA GG HSV L  +
Sbjct: 3   CWGYSSFGQPG--------IGSNLQ--VIIPEPQVYGFIHDRNVKEVACGGNHSVFLLED 52

Query: 153 GHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           G V+T G       G   + S P  +  L  + +  +A G  H++AL + G +++WG   
Sbjct: 53  GEVYTCGLNTKGQLGHESEGSKPEPIGALAGQHIVHVACGESHSVALSDQGQVFSWGAGS 112

Query: 209 YGQLG-TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
            GQLG T      + P  ++ L+  T++ I+ G WH  AL  DG+ + WG+  +G+LG G
Sbjct: 113 DGQLGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWGQNSYGQLGLG 172

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
             +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +G+   G+LG   +    
Sbjct: 173 -KECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRE 231

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            P  V +             R      ++CG  HT  + +
Sbjct: 232 SPCHVKLL------------RSQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  ++K L    +  +  G+ + LA+  DG+  T    
Sbjct: 105 VFSWGAGSDGQLGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWGQN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             ER  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDERDRESPCHVKLLRSQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +  +RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|118092565|ref|XP_001231234.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Gallus
           gallus]
          Length = 1056

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 182/395 (46%), Gaps = 56/395 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK--------VRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP K        +R V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFLNKRIRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K    P  V AL    IV  + G  H LA++D+G+ YAWG    G
Sbjct: 55  VYTCGCNDLGQLGHEKARKRPEHVGALDAQNIVAVSCGEAHTLALNDKGQVYAWGLATDG 114

Query: 105 QCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G    EE  R       + R+I    +   ++ + QVA G  HS+ L++   V++WGQ
Sbjct: 115 QLGLPGTEECIR-------VPRNI----KSLSEIQIVQVACGYYHSLALSKGSEVFSWGQ 163

Query: 161 PWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                     + K+ + P  ++ L  +    IA G  H+  L   GA++ WG N++GQLG
Sbjct: 164 NKYGQLGLGYEYKKQNSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG 223

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             D   R  P  ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  S 
Sbjct: 224 LNDDNDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSH 281

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ P+KV  L G  + Q++CG  H+ A     G I+SFG G +G+LG G       P  V
Sbjct: 282 EINPRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFTV 341

Query: 333 PIN-IPAPRNAGDGVD--RRWIAKLVACGGRHTLA 364
             N +P         D  + +  K +  GG  + A
Sbjct: 342 KGNWLPYSTQCLIPADSEQYYCVKRIFSGGDQSFA 376



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 66/243 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 152 LSKGSEVFSWGQNKYGQLGLGY-----------------------------------EYK 176

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +N P  + +L      Q A GG H   +   G  + WG N++GQ G      DD  R +
Sbjct: 177 KQNSPHVIKSLLGIPFAQIAAGGAHSFVLTLSGAIFGWGRNKFGQLG----LNDDNDRYV 232

Query: 121 RRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIK 168
                      P L+       V  +  G  H+  LT+EG V+T     +GQ        
Sbjct: 233 -----------PTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSH 281

Query: 169 QISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           +I+ P +V  L    V  I  G  H  A     G ++++G    GQLGTG T  R  P  
Sbjct: 282 EIN-PRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGTGTTSNRKSPFT 340

Query: 226 VQG 228
           V+G
Sbjct: 341 VKG 343



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+ ++ +R    ++K+L   KV  +  G  ++ A+  +G        
Sbjct: 210 AIFGWGRNKFGQLGLNDDNDRYVPTLLKSLRTQKVVHICCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                    T  E  P +V  L  + + Q   G  H  A V   GR Y++G    GQ G 
Sbjct: 270 GYGQLGHNSTSHEINPRKVFELMGSLVTQITCGRQHTTAFVPSSGRIYSFGLGGNGQLGT 329

Query: 109 EPERKDDTGRILR-------RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  +   ++          +IP        V+++ +GG  S       H +     
Sbjct: 330 GTTSNRKSPFTVKGNWLPYSTQCLIPADSEQYYCVKRIFSGGDQSF-----AHYFYPQNM 384

Query: 162 WPPGDIK 168
            PP D +
Sbjct: 385 VPPDDFR 391


>gi|145594515|ref|YP_001158812.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
 gi|145303852|gb|ABP54434.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
          Length = 554

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 157/355 (44%), Gaps = 35/355 (9%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +++AWG    GQLG G    R     V       + ++ AG  +SLA+ D          
Sbjct: 58  TVLAWGDNFSGQLGDGTTTARSTPVTVGLPAGTTITALAAGGSHSLALTDTGVVLAWGSN 117

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   + P  V   + T I   A G  H LA+ D G   AWG N  GQ G+ 
Sbjct: 118 SRGQLGDGTTTDRSTPVTVGLPAGTTITALAAGRRHSLALTDTGAVLAWGSNSNGQLGD- 176

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R   +         +  +AA  T+S+ LT  G    WG         G
Sbjct: 177 -------GTTTARSTPVTVGLPAGTTITALAAS-TYSLALTDTGAALAWGSNSRGQLGDG 228

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                S PV V       + A+ A   H+LAL + GA+ AWG+N  GQLG G T  RS P
Sbjct: 229 TTTDRSTPVTVSLPAGTTITALAASYDHSLALTDTGAVLAWGSNSNGQLGDGTTTNRSTP 288

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V   +G T+  +AAG  H+  LT  G V  WG   +G+LG  D   + +  P  V L 
Sbjct: 289 VTVGLPAGTTITALAAGRSHTLVLTSAGAVLAWGSNSNGQLG--DGTTTDRSTPVTVGLP 346

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           AG  I  ++ G  HS+ALT  G + ++G   +G+LG G   TT +   V + +PA
Sbjct: 347 AGTTITALAAGYYHSLALTDTGAVLAWGGNSYGQLGDG--TTTDRSTPVTVGLPA 399



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/318 (33%), Positives = 138/318 (43%), Gaps = 35/318 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           ++AWGS   GQLG G   +R     V       + ++ AG R+SLA+ D           
Sbjct: 111 VLAWGSNSRGQLGDGTTTDRSTPVTVGLPAGTTITALAAGRRHSLALTDTGAVLAWGSNS 170

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T   + P  V   + T I   A    + LA+ D G A AWG N  GQ G+  
Sbjct: 171 NGQLGDGTTTARSTPVTVGLPAGTTITALA-ASTYSLALTDTGAALAWGSNSRGQLGD-- 227

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                 G    R   +         +  +AA   HS+ LT  G V  WG         G 
Sbjct: 228 ------GTTTDRSTPVTVSLPAGTTITALAASYDHSLALTDTGAVLAWGSNSNGQLGDGT 281

Query: 167 IKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
               S PV V GL     +  +A G  H L L   GA+ AWG+N  GQLG G T  RS P
Sbjct: 282 TTNRSTPVTV-GLPAGTTITALAAGRSHTLVLTSAGAVLAWGSNSNGQLGDGTTTDRSTP 340

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V   +G T+  +AAG +HS ALTD G V  WG   +G+L  GD   + +  P  V L 
Sbjct: 341 VTVGLPAGTTITALAAGYYHSLALTDTGAVLAWGGNSYGQL--GDGTTTDRSTPVTVGLP 398

Query: 284 AGEDIVQVSCGGTHSVAL 301
           AG  I  +     H +AL
Sbjct: 399 AGTTITVLVSMDNHGMAL 416


>gi|442319170|ref|YP_007359191.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441486812|gb|AGC43507.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 1095

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 160/344 (46%), Gaps = 41/344 (11%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR----------------NSLA 52
            AWGS + GQLG G+     W            R + AG R                N+  
Sbjct: 722  AWGSNDKGQLGDGS---ARWHYAPTLSRLVGARGLAAGDRFTAARKSDGTVWAWGDNTYG 778

Query: 53   ICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
               DG T     P+QV+ L++ + + A  G  H + V   G  + WG N  GQ G+    
Sbjct: 779  QLGDGTTLATRSPAQVSGLTDVEGLAAGEG--HVVVVKMDGTVWTWGNNAKGQLGD---- 832

Query: 113  KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                G   RR  ++P +      V  VAAG  HS+ L  +G VW WG+        G   
Sbjct: 833  ----GTTTRR--LVPTQVPGLTGVVAVAAGYAHSLALKADGTVWGWGENIYGQLGDGTTT 886

Query: 169  QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            Q   P + QGL  V  +A G +H LA + DG LWAWG N +GQLG G T  R  P  V  
Sbjct: 887  QRVAPTQAQGLTVVLSMASGTYHGLARKADGTLWAWGYNAHGQLGIGTTTTRLAPTLVPS 946

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            LSG+  V ++A   HS AL  DG V+ WG   +G+LG  D   +++ VP +   L+   +
Sbjct: 947  LSGV--VSLSATHQHSLALKPDGTVWAWGYNSNGQLG--DGTTTTRHVPTQAPSLS--SV 1000

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              VS G  +S+A+  DG ++S+G  D G+LG G       P +V
Sbjct: 1001 KAVSAGFEYSLAVKADGTVWSWGINDRGQLGSGTATPRATPTQV 1044



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 174/352 (49%), Gaps = 37/352 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS-RNSLAICDDGKT 59
           + S  ++  WGS + GQLG G  E+R  +  V+ +    V +V AGS ++S+A+  +G+ 
Sbjct: 313 LKSDGTVWTWGSNQRGQLGDGTQEQR--LVPVQVMGLSGVVAVAAGSGQHSVAVMANGEV 370

Query: 60  KT--ENIPSQVNALSNT------------KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
            T   N+  Q+   S++            +    A G +H LA    G  +AWG N  GQ
Sbjct: 371 WTWGHNVEGQLGEGSSSYSAVPKRSHALVERTSVAAGRYHGLASKPDGTVWAWGDNAKGQ 430

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G+        G   +R  ++P +      +  VAAG   S+ L  +G VW WG      
Sbjct: 431 LGD--------GTTAQR--LLPTQVPGLTNMVAVAAGHHSSLALKADGTVWAWGDNANGQ 480

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G     S P +V GL  V  IA G  H LA++ DG LW WG+N  GQLG G T  R 
Sbjct: 481 LGNGSTTDRSNPTQVPGLTGVVSIAAGPGHALAVKADGTLWTWGDNNTGQLGDGTTVDRP 540

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V G++G+  V +AAG +HS  +  DG V+ WG    G+LG G    + + VP +  
Sbjct: 541 IPTQVPGVTGV--VSVAAGLYHSLVVKVDGTVWAWGSNYEGQLGGGTT--TIRPVPSQTP 596

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            L G  +V ++ G  HS+AL  DG ++++G   HG+LG G   T   P +VP
Sbjct: 597 NLTG--VVAITAGLYHSLALKTDGTVWAWGYNLHGQLGNGNTTTQQVPTQVP 646



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 162/359 (45%), Gaps = 51/359 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           M S  ++  WG    GQLG G    R+    V  L   +V  V AG  +SLA+       
Sbjct: 113 MKSDGTVWTWGGNNFGQLGDGTTTGRQAPVQVPGLG--EVVRVAAGFSHSLALKTDGTVW 170

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T    +P QV  L   K + A  G  H LA+D  GR +AWG N  G
Sbjct: 171 AWGSNGAGRLGDGTTTQRLMPVQVQGLPTIKAIAA--GNAHSLALDGTGRVWAWGSNSNG 228

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWG 159
           Q G               D     R  P L+        ++AG  HS+V   +G  W WG
Sbjct: 229 QLG---------------DTTAGYRMLPALVPGLTNATGLSAGSNHSLVRQADGTTWVWG 273

Query: 160 Q----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                    G     S P +V GL  V  +     H+L L+ DG +W WG+N+ GQLG G
Sbjct: 274 ANTYGQLGDGTTTSRSAPQQVSGLAGVDGVLGAELHSLVLKSDGTVWTWGSNQRGQLGDG 333

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
             + R  P+ V GLSG  +V +AAG G HS A+  +GEV+ WG    G+LG G +  S+ 
Sbjct: 334 TQEQRLVPVQVMGLSG--VVAVAAGSGQHSVAVMANGEVWTWGHNVEGQLGEGSSSYSA- 390

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            VP++ + L   +   V+ G  H +A   DG ++++G    G+LG G       P +VP
Sbjct: 391 -VPKRSHALV--ERTSVAAGRYHGLASKPDGTVWAWGDNAKGQLGDGTTAQRLLPTQVP 446



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 167/346 (48%), Gaps = 43/346 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G+ +++     V+A   + + +V AG  +SLA+            
Sbjct: 68  TVWAWGDNAYGQLGNGSLQDQR--VPVRAWGLWNISAVGAGDLHSLAMKSDGTVWTWGGN 125

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P QV  L   ++V+ A G  H LA+   G  +AWG N  G+ G+ 
Sbjct: 126 NFGQLGDGTTTGRQAPVQVPGLG--EVVRVAAGFSHSLALKTDGTVWAWGSNGAGRLGD- 182

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                  G   +R  ++P +      ++ +AAG  HS+ L   G VW WG     G +  
Sbjct: 183 -------GTTTQR--LMPVQVQGLPTIKAIAAGNAHSLALDGTGRVWAWGSN-SNGQLGD 232

Query: 170 IS-----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            +     +P  V GL     ++ G+ H+L  Q DG  W WG N YGQLG G T  RS P 
Sbjct: 233 TTAGYRMLPALVPGLTNATGLSAGSNHSLVRQADGTTWVWGANTYGQLGDGTTTSRSAPQ 292

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL+G+  V  A    HS  L  DG V+ WG  + G+L  GD  +  ++VP +V  L+
Sbjct: 293 QVSGLAGVDGVLGAE--LHSLVLKSDGTVWTWGSNQRGQL--GDGTQEQRLVPVQVMGLS 348

Query: 285 GEDIVQVSCG-GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           G  +V V+ G G HSVA+  +G ++++G    G+LG G    +  P
Sbjct: 349 G--VVAVAAGSGQHSVAVMANGEVWTWGHNVEGQLGEGSSSYSAVP 392



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 158/336 (47%), Gaps = 40/336 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG    GQLG G   +R     V  L    + +V AG  +SLA+  DG        
Sbjct: 419 TVWAWGDNAKGQLGDGTTAQRLLPTQVPGLT--NMVAVAAGHHSSLALKADGTVWAWGDN 476

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   + P+QV  L  T +V  A G  H LAV   G  + WG N  GQ G+ 
Sbjct: 477 ANGQLGNGSTTDRSNPTQVPGL--TGVVSIAAGPGHALAVKADGTLWTWGDNNTGQLGD- 533

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----G 165
                  G  + R I  P +      V  VAAG  HS+V+  +G VW WG  +      G
Sbjct: 534 -------GTTVDRPI--PTQVPGVTGVVSVAAGLYHSLVVKVDGTVWAWGSNYEGQLGGG 584

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 VP +   L  V  I  G +H+LAL+ DG +WAWG N +GQLG G+T  +  P  
Sbjct: 585 TTTIRPVPSQTPNLTGVVAITAGLYHSLALKTDGTVWAWGYNLHGQLGNGNTTTQQVPTQ 644

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V G SG   V + AG +HS A+  DG V+ WG    G+L  GD   +S+  P +V    G
Sbjct: 645 VPGFSG--GVSLGAGIYHSLAIKTDGSVWTWGYNYRGQL--GDGTTTSRTTPTQVAGFTG 700

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
                ++ G  HSVAL  DG  +++G  D G+LG G
Sbjct: 701 VSF--LAAGEFHSVALRTDGTAWAWGSNDKGQLGDG 734



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 169/385 (43%), Gaps = 65/385 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
           ++ AWG    GQLG GN   ++    V         S+ AG  +SLAI  DG   T   N
Sbjct: 619 TVWAWGYNLHGQLGNGNTTTQQVPTQVPGFS--GGVSLGAGIYHSLAIKTDGSVWTWGYN 676

Query: 64  IPSQV------------NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
              Q+                 T +   A G +H +A+   G A+AWG N+ GQ G+   
Sbjct: 677 YRGQLGDGTTTSRTTPTQVAGFTGVSFLAAGEFHSVALRTDGTAWAWGSNDKGQLGDGSA 736

Query: 112 R-----------------------------------KDDTGRILRRDIVIPQRCAPKLI- 135
           R                                    D+T   L     +  R   ++  
Sbjct: 737 RWHYAPTLSRLVGARGLAAGDRFTAARKSDGTVWAWGDNTYGQLGDGTTLATRSPAQVSG 796

Query: 136 ---VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVG 188
              V  +AAG  H VV+  +G VWTWG         G   +  VP +V GL  V  +A G
Sbjct: 797 LTDVEGLAAGEGHVVVVKMDGTVWTWGNNAKGQLGDGTTTRRLVPTQVPGLTGVVAVAAG 856

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H+LAL+ DG +W WG N YGQLG G T  R  P   QGL+   ++ +A+G +H  A  
Sbjct: 857 YAHSLALKADGTVWGWGENIYGQLGDGTTTQRVAPTQAQGLT--VVLSMASGTYHGLARK 914

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DG ++ WG   HG+LG G    ++++ P  V  L+G  +V +S    HS+AL  DG ++
Sbjct: 915 ADGTLWAWGYNAHGQLGIGTT--TTRLAPTLVPSLSG--VVSLSATHQHSLALKPDGTVW 970

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVP 333
           ++G   +G+LG G   T   P + P
Sbjct: 971 AWGYNSNGQLGDGTTTTRHVPTQAP 995



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 136/282 (48%), Gaps = 20/282 (7%)

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
           D G +  + + +   A + +++   A G  H LAV   G  +AWG N YGQ G       
Sbjct: 29  DGGPSSPDELATAKAAETASRLGLVAAGRHHTLAVRSDGTVWAWGDNAYGQLGNGS---- 84

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQI 170
                  +D  +P R      +  V AG  HS+ +  +G VWTWG         G     
Sbjct: 85  ------LQDQRVPVRAWGLWNISAVGAGDLHSLAMKSDGTVWTWGGNNFGQLGDGTTTGR 138

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             PV+V GL +V  +A G  H+LAL+ DG +WAWG+N  G+LG G T  R  P+ VQGL 
Sbjct: 139 QAPVQVPGLGEVVRVAAGFSHSLALKTDGTVWAWGSNGAGRLGDGTTTQRLMPVQVQGLP 198

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             T+  IAAG  HS AL   G V+ WG   +G+L  GD     +M+P  V  L   +   
Sbjct: 199 --TIKAIAAGNAHSLALDGTGRVWAWGSNSNGQL--GDTTAGYRMLPALVPGL--TNATG 252

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +S G  HS+    DG  + +G   +G+LG G   +   P +V
Sbjct: 253 LSAGSNHSLVRQADGTTWVWGANTYGQLGDGTTTSRSAPQQV 294



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 153/344 (44%), Gaps = 39/344 (11%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------- 61
           WG+   GQLG G    R     V  L    V  V+    +SL +  DG   T        
Sbjct: 272 WGANTYGQLGDGTTTSRSAPQQVSGLA--GVDGVLGAELHSLVLKSDGTVWTWGSNQRGQ 329

Query: 62  --------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                     +P QV  LS    V AA  G H +AV   G  + WG N  GQ GE     
Sbjct: 330 LGDGTQEQRLVPVQVMGLSGVVAV-AAGSGQHSVAVMANGEVWTWGHNVEGQLGEGSSSY 388

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
                       +P+R    +    VAAG  H +    +G VW WG         G   Q
Sbjct: 389 S----------AVPKRSHALVERTSVAAGRYHGLASKPDGTVWAWGDNAKGQLGDGTTAQ 438

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             +P +V GL  +  +A G   +LAL+ DG +WAWG+N  GQLG G T  RS P  V GL
Sbjct: 439 RLLPTQVPGLTNMVAVAAGHHSSLALKADGTVWAWGDNANGQLGNGSTTDRSNPTQVPGL 498

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G  +V IAAG  H+ A+  DG ++ WG    G+L  GD     + +P +V  + G  +V
Sbjct: 499 TG--VVSIAAGPGHALAVKADGTLWTWGDNNTGQL--GDGTTVDRPIPTQVPGVTG--VV 552

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            V+ G  HS+ +  DG ++++G    G+LG G       P + P
Sbjct: 553 SVAAGLYHSLVVKVDGTVWAWGSNYEGQLGGGTTTIRPVPSQTP 596



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 171/389 (43%), Gaps = 71/389 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWGS   G+LG G   +R     V+ L    ++++ AG+ +SLA+            
Sbjct: 168 TVWAWGSNGAGRLGDGTTTQRLMPVQVQGLP--TIKAIAAGNAHSLALDGTGRVWAWGSN 225

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE- 108
                 D       +P+ V  L+N   + A  G  H L     G  + WG N YGQ G+ 
Sbjct: 226 SNGQLGDTTAGYRMLPALVPGLTNATGLSA--GSNHSLVRQADGTTWVWGANTYGQLGDG 283

Query: 109 ------EPER------------KDDTGRILRRDIVI----------------PQRCAPKL 134
                  P++             +    +L+ D  +                 QR  P  
Sbjct: 284 TTTSRSAPQQVSGLAGVDGVLGAELHSLVLKSDGTVWTWGSNQRGQLGDGTQEQRLVPVQ 343

Query: 135 I-----VRQVAAG-GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL 184
           +     V  VAAG G HSV +   G VWTWG         G     +VP R   L +   
Sbjct: 344 VMGLSGVVAVAAGSGQHSVAVMANGEVWTWGHNVEGQLGEGSSSYSAVPKRSHALVERTS 403

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +A G +H LA + DG +WAWG+N  GQLG G T  R  P  V GL+   +V +AAG   S
Sbjct: 404 VAAGRYHGLASKPDGTVWAWGDNAKGQLGDGTTAQRLLPTQVPGLT--NMVAVAAGHHSS 461

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL  DG V+ WG   +G+LG G     S   P +V  L G  +V ++ G  H++A+  D
Sbjct: 462 LALKADGTVWAWGDNANGQLGNGSTTDRSN--PTQVPGLTG--VVSIAAGPGHALAVKAD 517

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           G ++++G  + G+LG G  V    P +VP
Sbjct: 518 GTLWTWGDNNTGQLGDGTTVDRPIPTQVP 546



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 159/336 (47%), Gaps = 42/336 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR-----------------N 49
           +  WG   +GQLG G++    +  V K       R+ VA  R                 N
Sbjct: 370 VWTWGHNVEGQLGEGSSS---YSAVPKRSHALVERTSVAAGRYHGLASKPDGTVWAWGDN 426

Query: 50  SLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
           +     DG T    +P+QV  L+N  +V  A G    LA+   G  +AWG N  GQ G  
Sbjct: 427 AKGQLGDGTTAQRLLPTQVPGLTN--MVAVAAGHHSSLALKADGTVWAWGDNANGQLGNG 484

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDI 167
                        D   P +      V  +AAG  H++ +  +G +WTWG       GD 
Sbjct: 485 STT----------DRSNPTQVPGLTGVVSIAAGPGHALAVKADGTLWTWGDNNTGQLGDG 534

Query: 168 KQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             +   +P +V G+  V  +A G +H+L ++ DG +WAWG+N  GQLG G T  R  P+P
Sbjct: 535 TTVDRPIPTQVPGVTGVVSVAAGLYHSLVVKVDGTVWAWGSNYEGQLGGGTTTIR--PVP 592

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            Q  +   +V I AG +HS AL  DG V+ WG   HG+LG G+   +++ VP +V   +G
Sbjct: 593 SQTPNLTGVVAITAGLYHSLALKTDGTVWAWGYNLHGQLGNGNT--TTQQVPTQVPGFSG 650

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              V +  G  HS+A+  DG ++++G    G+LG G
Sbjct: 651 G--VSLGAGIYHSLAIKTDGSVWTWGYNYRGQLGDG 684



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 156/322 (48%), Gaps = 35/322 (10%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+     +G  + + +P +   L N   V A  G  H LA+   G  + WGGN +GQ G+
Sbjct: 75  NAYGQLGNGSLQDQRVPVRAWGLWNISAVGA--GDLHSLAMKSDGTVWTWGGNNFGQLGD 132

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                  TGR  +  + +P        V +VAAG +HS+ L  +G VW WG         
Sbjct: 133 ----GTTTGR--QAPVQVPGLGE----VVRVAAGFSHSLALKTDGTVWAWGSNGAGRLGD 182

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G   Q  +PV+VQGL  +K IA G  H+LAL   G +WAWG+N  GQLG      R  P 
Sbjct: 183 GTTTQRLMPVQVQGLPTIKAIAAGNAHSLALDGTGRVWAWGSNSNGQLGDTTAGYRMLPA 242

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL+  T   ++AG  HS     DG  + WG   +G+L  GD   +S+  PQ+V+ LA
Sbjct: 243 LVPGLTNAT--GLSAGSNHSLVRQADGTTWVWGANTYGQL--GDGTTTSRSAPQQVSGLA 298

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
           G D V  +    HS+ L  DG ++++G    G+LG G +    +   VP+ +        
Sbjct: 299 GVDGVLGAE--LHSLVLKSDGTVWTWGSNQRGQLGDGTQ----EQRLVPVQVMGLSG--- 349

Query: 345 GVDRRWIAKLVACGGRHTLAIV 366
                 +  + A  G+H++A++
Sbjct: 350 ------VVAVAAGSGQHSVAVM 365



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 110/208 (52%), Gaps = 14/208 (6%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           VAAG  H++ +  +G VW WG         G ++   VPVR  GL  +  +  G  H+LA
Sbjct: 53  VAAGRHHTLAVRSDGTVWAWGDNAYGQLGNGSLQDQRVPVRAWGLWNISAVGAGDLHSLA 112

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           ++ DG +W WG N +GQLG G T  R  P+ V GL    +V +AAG  HS AL  DG V+
Sbjct: 113 MKSDGTVWTWGGNNFGQLGDGTTTGRQAPVQVPGLG--EVVRVAAGFSHSLALKTDGTVW 170

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG    GRL  GD   + +++P +V  L    I  ++ G  HS+AL   G ++++G   
Sbjct: 171 AWGSNGAGRL--GDGTTTQRLMPVQVQGL--PTIKAIAAGNAHSLALDGTGRVWAWGSNS 226

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           +G+LG     T G  M +P  +P   NA
Sbjct: 227 NGQLG---DTTAGYRM-LPALVPGLTNA 250



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 137/300 (45%), Gaps = 48/300 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            ++  WG+   GQLG G    R     V  L    V +V AG  +SLA+  DG        
Sbjct: 818  TVWTWGNNAKGQLGDGTTTRRLVPTQVPGLT--GVVAVAAGYAHSLALKADGTVWGWGEN 875

Query: 59   --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T T+ + P+Q   L  T ++  A G +H LA    G  +AWG N +GQ G  
Sbjct: 876  IYGQLGDGTTTQRVAPTQAQGL--TVVLSMASGTYHGLARKADGTLWAWGYNAHGQLGIG 933

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                               R AP L+     V  ++A   HS+ L  +G VW WG     
Sbjct: 934  ---------------TTTTRLAPTLVPSLSGVVSLSATHQHSLALKPDGTVWAWGYNSNG 978

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                G      VP +   L  VK ++ G  ++LA++ DG +W+WG N+ GQLG+G   PR
Sbjct: 979  QLGDGTTTTRHVPTQAPSLSSVKAVSAGFEYSLAVKADGTVWSWGINDRGQLGSGTATPR 1038

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            + P  V GL+ +TL+  A    H+  ++ DG + G+G  E G+LG GD     ++ P +V
Sbjct: 1039 ATPTQVAGLNSVTLLLAARA--HALVVSADGTMRGFGDNEAGQLGAGDT--LIRLAPNQV 1094



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 20/202 (9%)

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           P    +++     +   ++ L+A G  H LA++ DG +WAWG+N YGQLG G  Q +  P
Sbjct: 32  PSSPDELATAKAAETASRLGLVAAGRHHTLAVRSDGTVWAWGDNAYGQLGNGSLQDQRVP 91

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           +   GL  ++ V   AG  HS A+  DG V+ WG    G+L  GD   + +  P +V  L
Sbjct: 92  VRAWGLWNISAV--GAGDLHSLAMKSDGTVWTWGGNNFGQL--GDGTTTGRQAPVQVPGL 147

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
              ++V+V+ G +HS+AL  DG ++++G    GRLG G       P++V   +P      
Sbjct: 148 G--EVVRVAAGFSHSLALKTDGTVWAWGSNGAGRLGDGTTTQRLMPVQVQ-GLP------ 198

Query: 344 DGVDRRWIAKLVACGGRHTLAI 365
                    K +A G  H+LA+
Sbjct: 199 -------TIKAIAAGNAHSLAL 213


>gi|195482069|ref|XP_002101897.1| GE17877 [Drosophila yakuba]
 gi|194189421|gb|EDX03005.1| GE17877 [Drosophila yakuba]
          Length = 2660

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 176/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 1797 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 1856

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 1857 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 1916

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 1917 GHGNRMSYDRPKLVEH--------LNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 1968

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 1969 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 2028

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL +V +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 2029 GCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 2086

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 2087 KVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 2141

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 2142 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 2168



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 183/397 (46%), Gaps = 50/397 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 733  TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEG 792

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 793  TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 852

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R VA G +HS  ++ +G ++TWG        
Sbjct: 853  HGNRTTLDKPRL------VEALRAKK--IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 904

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   +++ V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 905  HGDNATQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 964

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ +V I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 965  SDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 1022

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 1023 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 1075

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA--IVEWQTEESK 374
                 G+D  ++ + VACG  H++A  +    T+E K
Sbjct: 1076 ----IGLDAVFVNR-VACGSSHSIAWGLPNASTDEEK 1107



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 101/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 886  ISSQGELYTWGLGEYGRLGHGDNATQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGA 945

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  + P ++  LS   +VQ   G    LA+   G  + WG  +
Sbjct: 946  VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGD 1005

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ WG
Sbjct: 1006 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAWG 1054

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                          +N++GQ G+G+T  
Sbjct: 1055 ----------------------------------------------DNDHGQQGSGNTFV 1068

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 1069 NKKPALVIGLDAVFVNRVACGSSHSIA 1095


>gi|326507328|dbj|BAJ95741.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 343

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 157/323 (48%), Gaps = 41/323 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           +  WG GEDGQLG G+ E+R    V+   +   + SV+ G+ ++ A  +D          
Sbjct: 35  LCTWGRGEDGQLGHGDAEDRLVPTVISGFDAPGITSVICGADHTTAYSEDEHQVYSWGWG 94

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G +     P  V AL   KI Q A G  HCLAV   G   +WG N+ GQ G  
Sbjct: 95  DFGRLGHGNSTDVFTPQPVKALQGIKIKQLACGDSHCLAVTMAGEVLSWGRNQNGQLGLG 154

Query: 110 PERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                        D ++PQ  +    + V+ +AAG  H+  +T +G ++ WG  W     
Sbjct: 155 T----------TEDSLLPQTIQAFEGISVKMIAAGAEHTAAVTEDGDIYGWG--WGRYGN 202

Query: 165 ---GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP +V  +E  ++ L+A G  H + +   G+L+ +G ++YGQLG GD + 
Sbjct: 203 LGLGDRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGSLYTYGWSKYGQLGHGDFED 262

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P  V+ L   +   I+ G  H+ ALT DG++YGWG  + G++G GDN  +    P +
Sbjct: 263 HLVPHKVEALKDSSTSQISGGWRHTMALTSDGKLYGWGWNKFGQVGAGDN--ADHCSPAQ 320

Query: 280 VNLLAGEDIVQVSCGGTHSVALT 302
           VN    + + QV+CG  H++A T
Sbjct: 321 VNFPEEQKVAQVACGWRHTLAFT 343



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 153/301 (50%), Gaps = 33/301 (10%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+        WG  E GQ G      D   R++    VI    AP   
Sbjct: 16  VVLVSAGASHSVALLAGNVLCTWGRGEDGQLG----HGDAEDRLVP--TVISGFDAPG-- 67

Query: 136 VRQVAAGGTHSVVLTREGH-VWTWGQPWPP------GDIKQISVPVRVQGLEQVKL--IA 186
           +  V  G  H+   + + H V++WG  W        G+   +  P  V+ L+ +K+  +A
Sbjct: 68  ITSVICGADHTTAYSEDEHQVYSWG--WGDFGRLGHGNSTDVFTPQPVKALQGIKIKQLA 125

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+   G + +WG N+ GQLG G T+    P  +Q   G+++  IAAG  H+ A
Sbjct: 126 CGDSHCLAVTMAGEVLSWGRNQNGQLGLGTTEDSLLPQTIQAFEGISVKMIAAGAEHTAA 185

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ + VP+KV+ + G+ +V V+CG  H++ ++  G 
Sbjct: 186 VTEDGDIYGWGWGRYGNLGLG--DRNDRFVPEKVSSVEGDKMVLVACGWRHTITVSSSGS 243

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   VP  + A +++            ++ G RHT+A+ 
Sbjct: 244 LYTYGWSKYGQLGHGDF----EDHLVPHKVEALKDSS--------TSQISGGWRHTMALT 291

Query: 367 E 367
            
Sbjct: 292 S 292



 Score = 37.7 bits (86), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           ++S+ S+  +G  + GQLG G+ E+      V+AL+      +  G R+++A+  DGK  
Sbjct: 238 VSSSGSLYTYGWSKYGQLGHGDFEDHLVPHKVEALKDSSTSQISGGWRHTMALTSDGKLY 297

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAV 89
                               P+QVN     K+ Q A G  H LA 
Sbjct: 298 GWGWNKFGQVGAGDNADHCSPAQVNFPEEQKVAQVACGWRHTLAF 342


>gi|326918486|ref|XP_003205519.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like
           [Meleagris gallopavo]
          Length = 1050

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     + +  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHESEGSKPELIGALAGQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HSV L+ +G V++WG     Q         ++VP  ++
Sbjct: 85  HIV------------HVACGESHSVALSDQGQVFSWGAGSDGQLGLTTIEDAVTVPRLIK 132

Query: 178 GLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  +  I+ G +H LAL  DG  + WG N YGQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQISCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG+   G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRES---PCHVKLLRSQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG  HTLA V
Sbjct: 291 LMGSEVSQIACGRHHTLAFV 310



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 164/361 (45%), Gaps = 55/361 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY------KVRSVVAGSRNSLAICDDGKTK 60
           ++ WG    GQ GIG+N +     ++   + Y       V+ V  G  +S+ + +DG+  
Sbjct: 1   MLCWGYSSFGQPGIGSNLQ----VIIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY 56

Query: 61  TENI--------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
           T  +              P  + AL+   IV  A G  H +A+ DQG+ ++WG    GQ 
Sbjct: 57  TCGLNTKGQLGHESEGSKPELIGALAGQHIVHVACGESHSVALSDQGQVFSWGAGSDGQ- 115

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
                     G     D V   R   KL    + Q++ G  H + L  +G  +TWGQ   
Sbjct: 116 ---------LGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWGQ--- 163

Query: 164 PGDIKQISV---------PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
                Q+ +         P RV+ L+ + L  +A G  H+ AL   GA++ WG N  GQL
Sbjct: 164 -NSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQL 222

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G  D + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  +
Sbjct: 223 GLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMN 280

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  
Sbjct: 281 DEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSP 340

Query: 332 V 332
           V
Sbjct: 341 V 341



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 32/280 (11%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTRE 152
            WG + +GQ G         G  L+  ++IP+      I    V++VA GG HSV L  +
Sbjct: 3   CWGYSSFGQPG--------IGSNLQ--VIIPEPQVYGFIHDRNVKEVACGGNHSVFLLED 52

Query: 153 GHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           G V+T G       G   + S P  +  L  + +  +A G  H++AL + G +++WG   
Sbjct: 53  GEVYTCGLNTKGQLGHESEGSKPELIGALAGQHIVHVACGESHSVALSDQGQVFSWGAGS 112

Query: 209 YGQLG-TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
            GQLG T      + P  ++ L+  T++ I+ G WH  AL  DG+ + WG+  +G+LG G
Sbjct: 113 DGQLGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWGQNSYGQLGLG 172

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
             +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +G+   G+LG   +    
Sbjct: 173 -KECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRE 231

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            P  V +             R      ++CG  HT  + +
Sbjct: 232 SPCHVKLL------------RSQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  ++K L    +  +  G+ + LA+  DG+  T    
Sbjct: 105 VFSWGAGSDGQLGLTTIEDAVTVPRLIKKLNQQTILQISCGNWHCLALAADGQFFTWGQN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             ER  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDERDRESPCHVKLLRSQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +  +RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|350396381|ref|XP_003484535.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Bombus
           impatiens]
          Length = 1088

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 192/408 (47%), Gaps = 57/408 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV--CVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--E 62
           +  WG+   G+LG+G  E+   +  C V   +  +++ +  G   ++ I  DGK  +   
Sbjct: 33  MFCWGNTRHGELGLGGIEDEIILVPCQVDFKKASEIQQIACGENYTVVITHDGKIYSCGN 92

Query: 63  NIPSQVNALSNTKIVQ------------AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           N   Q+      K +Q             A G +H +AV++ G+ ++WG N  GQ G   
Sbjct: 93  NDYGQLGHERGRKRLQLILGLDAFVFKKVACGAYHTIAVNEWGQLFSWGSNSEGQLGLNS 152

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL-------IVRQVAAGGTHSVVLTREGHVWTWG---- 159
           +                  C+P++       I+ QVA G  H++ LT  G +++WG    
Sbjct: 153 KNF--------------MECSPRMVKTLGTSIIVQVACGMKHALALTNNGELYSWGSNSE 198

Query: 160 -QPWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            Q     DI+    P  +  L    +  IA G +H++A+ + GA++ WG N +GQLG  D
Sbjct: 199 GQLGLGVDIRSEVKPKLINTLAGVPIAFIACGGYHSIAISKSGAIFGWGKNTFGQLGLND 258

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           TQ R+ P  +Q L    +   A G   S  LT DG V+  G G +G+LG G N+  ++++
Sbjct: 259 TQNRNLPHQLQTLRNAKICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNN--NEIL 316

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVP 333
           P++V  L G  + Q+SCG  H++AL    G ++++G G  G+LG    R + T Q +  P
Sbjct: 317 PRQVMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNNSTRSIPTPQVVHGP 376

Query: 334 INIPAPRNAGDGVDRR-------WIAKLVACGGRHTLAIVEWQTEESK 374
              P   +  D +D++       ++ K +  GG H  A V  Q +  K
Sbjct: 377 WVAPNGSSMMD-LDKQFSSCTVGYVVKHIFTGGDHCFATVVTQNDNIK 423



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 14/123 (11%)

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           +L   G+++ WG   HG LG G  +    +VP +V+     +I Q++CG  ++V +T DG
Sbjct: 26  SLLKKGDMFCWGNTRHGELGLGGIEDEIILVPCQVDFKKASEIQQIACGENYTVVITHDG 85

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            I+S G  D+G+LG+ R     Q +              G+D  ++ K VACG  HT+A+
Sbjct: 86  KIYSCGNNDYGQLGHERGRKRLQLIL-------------GLD-AFVFKKVACGAYHTIAV 131

Query: 366 VEW 368
            EW
Sbjct: 132 NEW 134



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 64/224 (28%)

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-------------------------- 227
           +L + G ++ WGN  +G+LG G  +     +P Q                          
Sbjct: 26  SLLKKGDMFCWGNTRHGELGLGGIEDEIILVPCQVDFKKASEIQQIACGENYTVVITHDG 85

Query: 228 --------------------------GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
                                     GL       +A G +H+ A+ + G+++ WG    
Sbjct: 86  KIYSCGNNDYGQLGHERGRKRLQLILGLDAFVFKKVACGAYHTIAVNEWGQLFSWGSNSE 145

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G+LG    +   +  P+ V  L    IVQV+CG  H++ALT +G ++S+G    G+LG G
Sbjct: 146 GQLGLNSKN-FMECSPRMVKTLGTSIIVQVACGMKHALALTNNGELYSWGSNSEGQLGLG 204

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             + +    EV    P   N   GV   +I    ACGG H++AI
Sbjct: 205 VDIRS----EVK---PKLINTLAGVPIAFI----ACGGYHSIAI 237



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 54/233 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + +   + +WGS  +GQLG+G +                +RS V                
Sbjct: 184 LTNNGELYSWGSNSEGQLGLGVD----------------IRSEVK--------------- 212

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P  +N L+   I   A GG+H +A+   G  + WG N +GQ G      D   R L
Sbjct: 213 ----PKLINTLAGVPIAFIACGGYHSIAISKSGAIFGWGKNTFGQLG----LNDTQNRNL 264

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
              +   +       +   A G   SV LT +G V+T     +GQ     +  +I +P +
Sbjct: 265 PHQLQTLRNAK----ICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSNNNEI-LPRQ 319

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           V  L    V  I+ G  H LAL    G ++AWG    GQLG   T  RS P P
Sbjct: 320 VMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGAGQLGNNST--RSIPTP 370



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 34/215 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + +I  WG    GQLG+ + + R     ++ L   K+     G   S+ +  DG   
Sbjct: 237 ISKSGAIFGWGKNTFGQLGLNDTQNRNLPHQLQTLRNAKICYAACGEEFSVFLTVDGGVF 296

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P QV  L  + + Q + G  H LA V  QGR YAWG    
Sbjct: 297 TCGAGMYGQLGHGSNNNEILPRQVMELMGSTVTQISCGKRHTLALVPSQGRVYAWGLGGA 356

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQ------------RCAPKLIVRQVAAGGTHSVVLTR 151
           GQ G    R   T +++    V P              C    +V+ +  GG H      
Sbjct: 357 GQLGNNSTRSIPTPQVVHGPWVAPNGSSMMDLDKQFSSCTVGYVVKHIFTGGDHCF---- 412

Query: 152 EGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIA 186
              V T      P D + +    ++  + + +L+A
Sbjct: 413 -ATVVTQNDNIKPDDCRTLESSSQILTITEEQLMA 446


>gi|91204161|emb|CAJ71814.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 411

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 167/360 (46%), Gaps = 44/360 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G    R++   VK LE   V S+ AG  ++LA+            
Sbjct: 56  TVWAWGGNHAGQLGDGTTNPRKFAIQVKGLE--DVVSIAAGWEHNLAVKSDGTVWAWGNN 113

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG  +  N P +V  + +   + A  G +H +A+   G  + WG NE  Q G+ 
Sbjct: 114 RFGQLGDGTNENRNTPVKVKTIKDVTEIDA--GFYHSIALQSDGTVWVWGNNELDQLGDG 171

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                      + D   P +      V  V+ G  H++VL  +G +W WG         G
Sbjct: 172 T----------KSDAYKPMQVQGLNNVVAVSGGNHHNLVLKADGTIWGWGANGYGQLGDG 221

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            + + S+P  V        IA G  +N+A++ DG++W WG N YGQLG G       PI 
Sbjct: 222 TMTESSIPTPVYDFNGAVFIASGNNYNVAVKADGSIWGWGMNTYGQLGNGTQTNSKIPIR 281

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           + GL+    V IA GG+H+  L  DG V   G    G+LG G    + +    KV+ L+ 
Sbjct: 282 INGLN--NSVSIATGGYHALILQQDGTVLSMGYNRTGQLGTGAT-SNYQYTTLKVHGLS- 337

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI-----PAPR 340
            D+V ++ G  HS+AL +DG I+++G  ++G+LG G       P+   I +     PAP+
Sbjct: 338 -DVVSIAAGYYHSLALKKDGTIWAWGNNEYGQLGDGTLNYKKLPILSQIKLDQTITPAPK 396



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 144/292 (49%), Gaps = 34/292 (11%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           Q + GG H L +   G  +AWGGN  GQ G+        G    R   I  +    ++  
Sbjct: 40  QISGGGSHSLVLKPDGTVWAWGGNHAGQLGD--------GTTNPRKFAIQVKGLEDVV-- 89

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            +AAG  H++ +  +G VW WG         G  +  + PV+V+ ++ V  I  G +H++
Sbjct: 90  SIAAGWEHNLAVKSDGTVWAWGNNRFGQLGDGTNENRNTPVKVKTIKDVTEIDAGFYHSI 149

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           ALQ DG +W WGNNE  QLG G      +P+ VQGL+   +V ++ G  H+  L  DG +
Sbjct: 150 ALQSDGTVWVWGNNELDQLGDGTKSDAYKPMQVQGLN--NVVAVSGGNHHNLVLKADGTI 207

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           +GWG   +G+LG G   +SS  +P  V    G   V ++ G  ++VA+  DG I+ +G  
Sbjct: 208 WGWGANGYGQLGDGTMTESS--IPTPVYDFNGA--VFIASGNNYNVAVKADGSIWGWGMN 263

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +G+LG G +  +    ++PI I    N+            +A GG H L +
Sbjct: 264 TYGQLGNGTQTNS----KIPIRINGLNNSVS----------IATGGYHALIL 301



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 130/251 (51%), Gaps = 24/251 (9%)

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPV 174
           IL    ++   C+    V Q++ GG+HS+VL  +G VW WG         G        +
Sbjct: 21  ILIVAAMLTFCCSLFAAVPQISGGGSHSLVLKPDGTVWAWGGNHAGQLGDGTTNPRKFAI 80

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +V+GLE V  IA G  HNLA++ DG +WAWGNN +GQLG G  + R+ P+ V+ +  +T 
Sbjct: 81  QVKGLEDVVSIAAGWEHNLAVKSDGTVWAWGNNRFGQLGDGTNENRNTPVKVKTIKDVTE 140

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           +D  AG +HS AL  DG V+ WG  E  +L  GD  KS    P +V  L   ++V VS G
Sbjct: 141 ID--AGFYHSIALQSDGTVWVWGNNELDQL--GDGTKSDAYKPMQVQGL--NNVVAVSGG 194

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H++ L  DG I+ +G   +G+LG G    +        +IP P    +G      A  
Sbjct: 195 NHHNLVLKADGTIWGWGANGYGQLGDGTMTES--------SIPTPVYDFNG------AVF 240

Query: 355 VACGGRHTLAI 365
           +A G  + +A+
Sbjct: 241 IASGNNYNVAV 251


>gi|383320311|ref|YP_005381152.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379321681|gb|AFD00634.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 428

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 181/387 (46%), Gaps = 68/387 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +I  WG+   GQL    ++ +    ++  L    V+SV AG  ++LA+ DDG        
Sbjct: 47  TIWEWGNNSSGQLAESTDDTK--YLLIHRLNMTGVKSVSAGMYHNLALKDDGTVWAWGYN 104

Query: 59  --------TK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   TK T + P QVN +SN   + A  GG    A+ D G  + WG N YGQ G  
Sbjct: 105 RNGQLGDGTKITRSTPVQVN-ISNVTAIFA--GGLDSFALKDDGTLWGWGANFYGQLG-- 159

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD--- 166
                D   I R   + P R  P   V+ V++ G  ++ L  +G VW WG      D   
Sbjct: 160 -----DGTNITR---LSPVRI-PIDNVKVVSSKGGSTIALKDDGTVWAWGCNIFAEDQEG 210

Query: 167 ------------IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                        K +  P RV GL+ VK +  G    +AL+ DG +WAWG+   GQLG 
Sbjct: 211 RYQTGCLGVNSTDKFVLSPARVGGLDNVKDVDAGGTFTIALKNDGTVWAWGDGSQGQLGK 270

Query: 215 G-------DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           G       D   +S PI V GLS   +VDI+AG  H+ AL DDG ++ WG    G LG G
Sbjct: 271 GFKMNGPLDDPYQSTPIQVIGLS--DIVDISAGDRHAMALKDDGTIWTWGYNMMGELGDG 328

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK---- 323
               ++K  P KVNL   ED++ +S GG HS+AL +DG ++++G   +G +G G      
Sbjct: 329 SY-WNTKPSPVKVNL---EDVIAISAGGMHSLALKKDGSVWAWGGNYYGEVGDGSTDDVK 384

Query: 324 ----VTTGQPMEVPINIPAPRNAGDGV 346
               +  GQ    P    A  +A  GV
Sbjct: 385 PLPLMIIGQGAHTPSTAAASPDAMGGV 411



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 152/316 (48%), Gaps = 47/316 (14%)

Query: 68  VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP 127
           VN+ S  K+ + + G +H + + D G  + WG N  GQ  E     DDT  +L   + + 
Sbjct: 22  VNSASQ-KVEEISAGEFHNIVLCDDGTIWEWGNNSSGQLAES---TDDTKYLLIHRLNMT 77

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQI--SVPVRVQGLEQVK 183
                   V+ V+AG  H++ L  +G VW WG  +    GD  +I  S PV+V  +  V 
Sbjct: 78  G-------VKSVSAGMYHNLALKDDGTVWAWGYNRNGQLGDGTKITRSTPVQVN-ISNVT 129

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP--IPVQGLSGLTLVDIAAGG 241
            I  G   + AL++DG LW WG N YGQLG G    R  P  IP+  +       +++ G
Sbjct: 130 AIFAGGLDSFALKDDGTLWGWGANFYGQLGDGTNITRLSPVRIPIDNVK-----VVSSKG 184

Query: 242 WHSTALTDDGEVYGW----------GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             + AL DDG V+ W          GR + G LG    DK   + P +V  L  +++  V
Sbjct: 185 GSTIALKDDGTVWAWGCNIFAEDQEGRYQTGCLGVNSTDKFV-LSPARVGGL--DNVKDV 241

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG--DGVDRR 349
             GGT ++AL  DG ++++G G  G+LG G K+    P++ P      +  G  D VD  
Sbjct: 242 DAGGTFTIALKNDGTVWAWGDGSQGQLGKGFKMN--GPLDDPYQSTPIQVIGLSDIVD-- 297

Query: 350 WIAKLVACGGRHTLAI 365
                ++ G RH +A+
Sbjct: 298 -----ISAGDRHAMAL 308



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 112/198 (56%), Gaps = 15/198 (7%)

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-----VP 173
           +L    V+P   A +  V +++AG  H++VL  +G +W WG     G + + +     + 
Sbjct: 13  VLLFTFVVPVNSASQK-VEEISAGEFHNIVLCDDGTIWEWGNN-SSGQLAESTDDTKYLL 70

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           +    +  VK ++ G +HNLAL++DG +WAWG N  GQLG G    RS P+ V  +S +T
Sbjct: 71  IHRLNMTGVKSVSAGMYHNLALKDDGTVWAWGYNRNGQLGDGTKITRSTPVQVN-ISNVT 129

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              I AGG  S AL DDG ++GWG   +G+LG G N   +++ P ++ +   +++  VS 
Sbjct: 130 A--IFAGGLDSFALKDDGTLWGWGANFYGQLGDGTN--ITRLSPVRIPI---DNVKVVSS 182

Query: 294 GGTHSVALTRDGHIFSFG 311
            G  ++AL  DG ++++G
Sbjct: 183 KGGSTIALKDDGTVWAWG 200


>gi|12856817|dbj|BAB30794.1| unnamed protein product [Mus musculus]
          Length = 913

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA+V
Sbjct: 291 LMGSEVTQIACGRQHTLALV 310



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 166/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N +       VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLQGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  IKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   SV     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAK 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|332027112|gb|EGI67208.1| Putative E3 ubiquitin-protein ligase HERC2 [Acromyrmex echinatior]
          Length = 4853

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 185/394 (46%), Gaps = 51/394 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     ++L   +   +  G +   A+  DGK       
Sbjct: 3995 AIYGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQLAGGEQTLFAVTADGKIYSTGYG 4054

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  IP+ + ++ +  I + A+  GG HC+A+  +G  Y+WG  + G+ G
Sbjct: 4055 AAGRLGIGGTDSVMIPTLLESIQHVFIKKVAVSSGGKHCIALSSEGHVYSWGEGDDGKLG 4114

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
               +   D  +++   + +         +  +A GG HS  +T  G ++TWG+       
Sbjct: 4115 HGNKVSYDRPKLIEDLLGVE--------IVDIACGGHHSAAITSAGWLYTWGKGRYGRLG 4166

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V+ L+  K+I V    G    L + +D  +W+WG+ +YG+LG G +  
Sbjct: 4167 HGDSDDQLRPKVVEALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKLGRGGSDG 4226

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P+K
Sbjct: 4227 CKVPLKIDSLAGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRR--PRK 4284

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G    T   +  P  + A 
Sbjct: 4285 VAALQGKKIISIATGSLHCVACSDKGEVFTWGDNDEGQLGDG----TTSALHRPRLVHAL 4340

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            +  G  + R      VACG  HTLA   W T ++
Sbjct: 4341 Q--GKKITR------VACGSAHTLA---WSTAKA 4363



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 159/321 (49%), Gaps = 46/321 (14%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K +  A G      V  +G+ YA G    G+ G      DD        
Sbjct: 3035 LPVYSETLSKLKPIHIAGGSKTLFIVSQEGKLYACGEGTNGRLG----LGDDNNM----- 3085

Query: 124  IVIPQRCAPK-------LIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
                  C PK        ++++VA  +GG H++ LT++G V++WG+        G+   +
Sbjct: 3086 ------CEPKAIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNCISL 3139

Query: 171  SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              P  ++ L+  +++ IA G+ H+ A+  +G L+ WG  EYG+LG GDT  +++P  VQ 
Sbjct: 3140 DKPKLIEVLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDTITQTRPKLVQA 3199

Query: 229  LSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            L G  +V +A G     + ALT DG VY WG G+ G+LG G +D      P  V+ L   
Sbjct: 3200 LIGHRVVQVACGSRDAQTMALTTDGYVYSWGDGDFGKLGRGGSDGC--YTPLLVDRLNNL 3257

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
             ++QV CG   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+
Sbjct: 3258 GVIQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGL 3306

Query: 347  DRRWIAKLVACGGRHTLAIVE 367
              + I   VA G  H LA+ +
Sbjct: 3307 RGKKIIH-VAVGALHCLAVTD 3326



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 153/331 (46%), Gaps = 58/331 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKTKT--- 61
            + A G G +G+LG+G++        +  L  + ++ V   +G +++LA+  DGK  +   
Sbjct: 3066 LYACGEGTNGRLGLGDDNNMCEPKAIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGE 3125

Query: 62   -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          + P  +  L + +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3126 GEDGKLGHGNCISLDKPKLIEVLKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGH 3185

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                          D +   R  PKL+       V QVA G     ++ LT +G+V++WG
Sbjct: 3186 G-------------DTITQTR--PKLVQALIGHRVVQVACGSRDAQTMALTTDGYVYSWG 3230

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++          P+ V  L  + +I V  GA  +LAL + G +W WG  +Y
Sbjct: 3231 D----GDFGKLGRGGSDGCYTPLLVDRLNNLGVIQVECGAQFSLALTKYGEVWTWGKGDY 3286

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G+     +P  V+GL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G  
Sbjct: 3287 FRLGHGNDHHVRKPTLVEGLRGKKIIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTT 3346

Query: 270  DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              + K  P  V+ L    + +VSCG +HS+A
Sbjct: 3347 SVNRK--PSLVHDLEDARVNRVSCGSSHSIA 3375



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 30/231 (12%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           AWGG ++G  G  P   D                  +L ++Q+       ++L+  G+V+
Sbjct: 503 AWGGVKFGN-GSTPFYCDAIA---------------ELGIKQLCCTERALMILSLNGNVY 546

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF----HNLALQEDGALWAWGNNEYGQL 212
                       +   P RV G     +  + +     H LAL +DG +++WGN + G+L
Sbjct: 547 NMYHG------SETQYPQRVHGFSDKPITMIASHADGKHYLALTQDGCVYSWGNGDGGRL 600

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G GDT    +P  ++ L    ++ IA G  +S AL+ +GE+Y WGRG +GRLG G+ D  
Sbjct: 601 GHGDTISYDEPKLIEALLEKNIIFIACGSTYSAALSANGELYTWGRGNYGRLGHGNFDDV 660

Query: 273 SKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYG 321
             M P  V  L G  +V V+CG   + ++ +T  G +FS+G GD+G+LG G
Sbjct: 661 --MTPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRG 709



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 22/237 (9%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           A G H + LT++G V++WG         GD      P  ++ L  + +  IA G+ ++ A
Sbjct: 575 ADGKHYLALTQDGCVYSWGNGDGGRLGHGDTISYDEPKLIEALLEKNIIFIACGSTYSAA 634

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL--TDDGE 252
           L  +G L+ WG   YG+LG G+      P  V  L G T+V +A G   S  L  T  G 
Sbjct: 635 LSANGELYTWGRGNYGRLGHGNFDDVMTPTLVTTLKGHTVVHVACGSGDSQTLCVTASGI 694

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG G++G+LG G  D S    P+ V+ L   ++V+V CG   S ALT  G ++++G+
Sbjct: 695 VFSWGDGDYGKLGRGGTDGSK--TPKIVDKLLDINVVKVFCGSQFSAALTAHGEVYTWGK 752

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           GD  RLG+G +    + +  P  I + R      DR+   K ++ G  H LA+ E Q
Sbjct: 753 GDAYRLGHGSE----EHVRYPKVIESLR------DRK--VKDLSVGTTHILALTEDQ 797



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                     V+  R            
Sbjct: 4096 LSSEGHVYSWGEGDDGKLGHGNK--------------------VSYDR------------ 4123

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                P  +  L   +IV  A GG H  A+   G  Y WG   YG+ G       D+   L
Sbjct: 4124 ----PKLIEDLLGVEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGH-----GDSDDQL 4174

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            R  +V   +   K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 4175 RPKVVEALQ-DYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKV 4229

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P+++  L  + ++ V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 4230 PLKIDSLAGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRKVAALQ 4289

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A +D GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I +
Sbjct: 4290 GKKIISIATGSLHCVACSDKGEVFTWGDNDEGQL--GDGTTSALHRPRLVHALQGKKITR 4347

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 4348 VACGSAHTLA 4357



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 34/271 (12%)

Query: 65  PSQVNALSNTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD 115
           P +V+  S+  I   A    G H LA+   G  Y+WG  + G+ G       +EP+  + 
Sbjct: 557 PQRVHGFSDKPITMIASHADGKHYLALTQDGCVYSWGNGDGGRLGHGDTISYDEPKLIE- 615

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              +L ++I+             +A G T+S  L+  G ++TWG+        G+   + 
Sbjct: 616 --ALLEKNIIF------------IACGSTYSAALSANGELYTWGRGNYGRLGHGNFDDVM 661

Query: 172 VPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            P  V  L+   ++ V    G    L +   G +++WG+ +YG+LG G T     P  V 
Sbjct: 662 TPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSKTPKIVD 721

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L  + +V +  G   S ALT  GEVY WG+G+  RLG G  +      P+ +  L    
Sbjct: 722 KLLDINVVKVFCGSQFSAALTAHGEVYTWGKGDAYRLGHGSEEHVR--YPKVIESLRDRK 779

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +  +S G TH +ALT D  ++ +GR D+G++
Sbjct: 780 VKDLSVGTTHILALTEDQFVYGWGRNDYGQI 810



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P P + LS L  + +A G     A+T DG++Y  G 
Sbjct: 3994 GAIYGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQLAGGEQTLFAVTADGKIYSTGY 4053

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S M+P  +  +    I  V VS GG H +AL+ +GH++S+G GD G
Sbjct: 4054 GAAGRLGIGGTD--SVMIPTLLESIQHVFIKKVAVSSGGKHCIALSSEGHVYSWGEGDDG 4111

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G KV+  +P  +   +       + VD       +ACGG H+ AI
Sbjct: 4112 KLGHGNKVSYDRPKLIEDLLGV-----EIVD-------IACGGHHSAAI 4148



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +  A++ WG N+  QLG         P+  + LS L  + IA G      ++ +G++Y  
Sbjct: 3010 QQSAVYVWGLNDKDQLGGLKGSKIKLPVYSETLSKLKPIHIAGGSKTLFIVSQEGKLYAC 3069

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGD 314
            G G +GRLG GD++   +  P+ +  L+   I  V V  GG H++ALT+DG +FS+G G+
Sbjct: 3070 GEGTNGRLGLGDDNNMCE--PKAIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGE 3127

Query: 315  HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG+G  ++  +P  + + + + R            + +ACG  H+ AI
Sbjct: 3128 DGKLGHGNCISLDKPKLIEV-LKSKR-----------IRDIACGSGHSAAI 3166



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 32/264 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG+G+ G+LG G+    +   +++AL    +  +  GS  S A+  +G+  T     
Sbjct: 589 VYSWGNGDGGRLGHGDTISYDEPKLIEALLEKNIIFIACGSTYSAALSANGELYTWGRGN 648

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                         P+ V  L    +V  A G      L V   G  ++WG  +YG+ G 
Sbjct: 649 YGRLGHGNFDDVMTPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGR 708

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T +I+ + + I         V +V  G   S  LT  G V+TWG+        
Sbjct: 709 GGTDGSKTPKIVDKLLDIN--------VVKVFCGSQFSAALTAHGEVYTWGKGDAYRLGH 760

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G  + +  P  ++ L   +VK ++VG  H LAL ED  ++ WG N+YGQ+        S+
Sbjct: 761 GSEEHVRYPKVIESLRDRKVKDLSVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPIISE 820

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTA 246
           P     LS  T++ +A+G   S A
Sbjct: 821 PTLCPTLSSKTVIGLASGPTQSFA 844



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 32/259 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERK 113
           G T + + P  + AL    I+  A G  +  A+   G  Y WG   YG+ G    +    
Sbjct: 603 GDTISYDEPKLIEALLEKNIIFIACGSTYSAALSANGELYTWGRGNYGRLGHGNFDDVMT 662

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--- 170
                 L+   V+   C          +G + ++ +T  G V++WG     GD  ++   
Sbjct: 663 PTLVTTLKGHTVVHVAC---------GSGDSQTLCVTASGIVFSWGD----GDYGKLGRG 709

Query: 171 -----SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                  P  V  L  + ++ V  G+  + AL   G ++ WG  +  +LG G  +    P
Sbjct: 710 GTDGSKTPKIVDKLLDINVVKVFCGSQFSAALTAHGEVYTWGKGDAYRLGHGSEEHVRYP 769

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGDNDKSSKMVPQKVN 281
             ++ L    + D++ G  H  ALT+D  VYGWGR ++G++    G       + P    
Sbjct: 770 KVIESLRDRKVKDLSVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPIISEPTLCPT--- 826

Query: 282 LLAGEDIVQVSCGGTHSVA 300
            L+ + ++ ++ G T S A
Sbjct: 827 -LSSKTVIGLASGPTQSFA 844



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 26/177 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            +AS   +  WG GE G+LG G+   +    +V+AL  ++V  V  GSR+  ++A+  DG 
Sbjct: 3166 IASNGELYTWGLGEYGRLGHGDTITQTRPKLVQALIGHRVVQVACGSRDAQTMALTTDGY 3225

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                   P  V+ L+N  ++Q   G    LA+   G  + WG  +
Sbjct: 3226 VYSWGDGDFGKLGRGGSDGCYTPLLVDRLNNLGVIQVECGAQFSLALTKYGEVWTWGKGD 3285

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y + G   +        +R+  ++      K+I   VA G  H + +T  G V+ WG
Sbjct: 3286 YFRLGHGNDHH------VRKPTLVEGLRGKKII--HVAVGALHCLAVTDTGQVYAWG 3334


>gi|27503689|gb|AAH42574.1| Hect domain and RLD 3 [Mus musculus]
          Length = 1050

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA+V
Sbjct: 291 LMGSEVTQIACGRQHTLALV 310



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 166/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N +       VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLQGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  IKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKLL------------RTQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   SV     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 210 AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 269

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 270 SCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLG 328


>gi|397599967|gb|EJK57568.1| hypothetical protein THAOC_22376, partial [Thalassiosira oceanica]
          Length = 657

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 161/335 (48%), Gaps = 57/335 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG G+DG+LG G+N    W                                 + +P 
Sbjct: 28  VYTWGRGDDGRLGHGDNG---W---------------------------------KYVPR 51

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
             ++L+   I     G +H  AV  +G  + WGG  YG+ G   E    T +  R D ++
Sbjct: 52  LTHSLAGQVITHVTCGSYHTAAVSSKGNLFTWGGGMYGKLGHGNESGHSTPK--RVDSLV 109

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQISVPVRVQG 178
                  L V  +A G  H+ ++T  G ++TWG             G      +  R+ G
Sbjct: 110 ------GLAVVDIACGSRHTAIVTSRGCLYTWGDKENGVAGHGDTEGHQYTPKLLERLSG 163

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
              V+L A G FH   L + G ++ WG  ++G+LG G  +    P  V+ L G   V I+
Sbjct: 164 KRVVQLSACG-FHTGCLTDAGEVYTWGEGKFGRLGHGAERNCHSPRLVETLLGKRPVQIS 222

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG+HS  +T DG++Y +G GEHG+LG GD  K +K+ P  V  L G  + Q++CG +HS
Sbjct: 223 CGGFHSAVVTADGKMYTFGGGEHGQLGHGD--KVNKVKPTLVKDLDGVFLTQITCGWSHS 280

Query: 299 VALTRDGHIFSFGRGDHGRLGY--GRKVTTGQPME 331
           VALT    ++++G GDHG+LG+  G+KV+T Q +E
Sbjct: 281 VALTSSHEVYTWGNGDHGKLGHGCGKKVSTPQLVE 315



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 125/238 (52%), Gaps = 21/238 (8%)

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL--IAVG 188
           ++  V  G  H+  ++ +G+++TWG         G+    S P RV  L  + +  IA G
Sbjct: 60  VITHVTCGSYHTAAVSSKGNLFTWGGGMYGKLGHGNESGHSTPKRVDSLVGLAVVDIACG 119

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           + H   +   G L+ WG+ E G  G GDT+  +  P  ++ LSG  +V ++A G+H+  L
Sbjct: 120 SRHTAIVTSRGCLYTWGDKENGVAGHGDTEGHQYTPKLLERLSGKRVVQLSACGFHTGCL 179

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           TD GEVY WG G+ GRLG G         P+ V  L G+  VQ+SCGG HS  +T DG +
Sbjct: 180 TDAGEVYTWGEGKFGRLGHGAERNCHS--PRLVETLLGKRPVQISCGGFHSAVVTADGKM 237

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           ++FG G+HG+LG+G KV   +P  V           DGV        + CG  H++A+
Sbjct: 238 YTFGGGEHGQLGHGDKVNKVKPTLV--------KDLDGV----FLTQITCGWSHSVAL 283



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 31/276 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S  ++  WG G  G+LG GN         V +L    V  +  GSR++  +   G   
Sbjct: 74  VSSKGNLFTWGGGMYGKLGHGNESGHSTPKRVDSLVGLAVVDIACGSRHTAIVTSRGCLY 133

Query: 61  T-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
           T                 +  P  +  LS  ++VQ +  G+H   + D G  Y WG  ++
Sbjct: 134 TWGDKENGVAGHGDTEGHQYTPKLLERLSGKRVVQLSACGFHTGCLTDAGEVYTWGEGKF 193

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           G+ G   ER   + R++  + ++ +R        Q++ GG HS V+T +G ++T+G    
Sbjct: 194 GRLGHGAERNCHSPRLV--ETLLGKRPV------QISCGGFHSAVVTADGKMYTFGGGEH 245

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD      P  V+ L+ V L  I  G  H++AL     ++ WGN ++G+LG G  
Sbjct: 246 GQLGHGDKVNKVKPTLVKDLDGVFLTQITCGWSHSVALTSSHEVYTWGNGDHGKLGHGCG 305

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           +  S P  V+ L G  +V +A+   H+  L +   V
Sbjct: 306 KKVSTPQLVEKLVGQKVVCVASYNEHTACLVEPHSV 341



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 15/119 (12%)

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T  G VY WGRG+ GRLG GDN    K VP+  + LAG+ I  V+CG  H+ A++  G++
Sbjct: 23  THGGGVYTWGRGDDGRLGHGDN--GWKYVPRLTHSLAGQVITHVTCGSYHTAAVSSKGNL 80

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           F++G G +G+LG+G +     P  V   +         VD       +ACG RHT AIV
Sbjct: 81  FTWGGGMYGKLGHGNESGHSTPKRVDSLVGLAV-----VD-------IACGSRHT-AIV 126


>gi|304318007|ref|YP_003853152.1| S-layer domain-containing protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779509|gb|ADL70068.1| S-layer domain protein [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 479

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 30/263 (11%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G +H +A+ + G  +AWG N+ GQ G+        G    R I +  +    ++   +
Sbjct: 232 AAGAYHTVALKNDGTVWAWGWNDCGQLGD--------GTTTNRTIPVQVKGISDVVA--I 281

Query: 140 AAGGTHSVVLTREGHVWTWGQPWPPGDIKQI----------SVPVRVQGLEQVKLIAVGA 189
           AAG  H+V L  +G VW WG      +  Q+          S PV+V+G+  VK IA GA
Sbjct: 282 AAGMYHTVALKNDGTVWAWGD----NEHDQLGNETTKEEYHSTPVQVKGISDVKAIAAGA 337

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            + + L+ DG +WAWG NEYG+LG G T     P+ V G+S +    IAAG +H+  L +
Sbjct: 338 SYTVVLKNDGTVWAWGVNEYGKLGDGTTNNSFTPVQVNGISNVKA--IAAGAYHTVVLKN 395

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG   +G LG G    SS   P +V  ++  D+  ++ G  H+VAL  DG +++
Sbjct: 396 DGTVWTWGYNHYGELGNGTTVDSS--TPVQVKGIS--DVKAIAAGACHTVALKNDGTVWA 451

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV 332
           +G   +G LG G  V +  P++V
Sbjct: 452 WGCNYYGELGNGTAVDSSTPVQV 474



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 132/260 (50%), Gaps = 32/260 (12%)

Query: 40  VRSVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTKIVQAAIGG 83
           V+++ AG+ +++A+ +DG                 T    IP QV  +S+  +V  A G 
Sbjct: 228 VKAIAAGAYHTVALKNDGTVWAWGWNDCGQLGDGTTTNRTIPVQVKGISD--VVAIAAGM 285

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           +H +A+ + G  +AWG NE+ Q G E  +++            P +      V+ +AAG 
Sbjct: 286 YHTVALKNDGTVWAWGDNEHDQLGNETTKEEYHST--------PVQVKGISDVKAIAAGA 337

Query: 144 THSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG 199
           +++VVL  +G VW WG         G       PV+V G+  VK IA GA+H + L+ DG
Sbjct: 338 SYTVVLKNDGTVWAWGVNEYGKLGDGTTNNSFTPVQVNGISNVKAIAAGAYHTVVLKNDG 397

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            +W WG N YG+LG G T   S P+ V+G+S +    IAAG  H+ AL +DG V+ WG  
Sbjct: 398 TVWTWGYNHYGELGNGTTVDSSTPVQVKGISDVKA--IAAGACHTVALKNDGTVWAWGCN 455

Query: 260 EHGRLGFGDNDKSSKMVPQK 279
            +G LG G    SS  V  K
Sbjct: 456 YYGELGNGTAVDSSTPVQVK 475



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 129/238 (54%), Gaps = 30/238 (12%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDIKQISVPVRVQGLEQVKLIAVGA 189
           V+ +AAG  H+V L  +G VW WG  W        G     ++PV+V+G+  V  IA G 
Sbjct: 228 VKAIAAGAYHTVALKNDGTVWAWG--WNDCGQLGDGTTTNRTIPVQVKGISDVVAIAAGM 285

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQP--RSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           +H +AL+ DG +WAWG+NE+ QLG   T+    S P+ V+G+S +    IAAG  ++  L
Sbjct: 286 YHTVALKNDGTVWAWGDNEHDQLGNETTKEEYHSTPVQVKGISDVKA--IAAGASYTVVL 343

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            +DG V+ WG  E+G+LG G  + S    P +VN ++  ++  ++ G  H+V L  DG +
Sbjct: 344 KNDGTVWAWGVNEYGKLGDGTTNNS--FTPVQVNGIS--NVKAIAAGAYHTVVLKNDGTV 399

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +++G   +G LG G  V +  P++V            G+      K +A G  HT+A+
Sbjct: 400 WTWGYNHYGELGNGTTVDSSTPVQVK-----------GISD---VKAIAAGACHTVAL 443



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 36/244 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG  + GQLG G    R     VK +    V ++ AG  +++A+ +DG        
Sbjct: 246 TVWAWGWNDCGQLGDGTTTNRTIPVQVKGIS--DVVAIAAGMYHTVALKNDGTVWAWGDN 303

Query: 58  ----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     K +  + P QV  +S+ K + A  G  + + + + G  +AWG NEYG+ G
Sbjct: 304 EHDQLGNETTKEEYHSTPVQVKGISDVKAIAA--GASYTVVLKNDGTVWAWGVNEYGKLG 361

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
           +       T          P +      V+ +AAG  H+VVL  +G VWTWG        
Sbjct: 362 DGTTNNSFT----------PVQVNGISNVKAIAAGAYHTVVLKNDGTVWTWGYNHYGELG 411

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G     S PV+V+G+  VK IA GA H +AL+ DG +WAWG N YG+LG G     S P
Sbjct: 412 NGTTVDSSTPVQVKGISDVKAIAAGACHTVALKNDGTVWAWGCNYYGELGNGTAVDSSTP 471

Query: 224 IPVQ 227
           + V+
Sbjct: 472 VQVK 475



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 16/133 (12%)

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           T+  IAAG +H+ AL +DG V+ WG  + G+L  GD   +++ +P +V  ++  D+V ++
Sbjct: 227 TVKAIAAGAYHTVALKNDGTVWAWGWNDCGQL--GDGTTTNRTIPVQVKGIS--DVVAIA 282

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G  H+VAL  DG ++++G  +H +L  G + T  +    P+ +    +           
Sbjct: 283 AGMYHTVALKNDGTVWAWGDNEHDQL--GNETTKEEYHSTPVQVKGISD----------V 330

Query: 353 KLVACGGRHTLAI 365
           K +A G  +T+ +
Sbjct: 331 KAIAAGASYTVVL 343


>gi|188035869|ref|NP_082981.3| hect domain and RLD 3 [Mus musculus]
 gi|148666330|gb|EDK98746.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
 gi|148666331|gb|EDK98747.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
 gi|148666332|gb|EDK98748.1| hect domain and RLD 3, isoform CRA_b [Mus musculus]
 gi|148877724|gb|AAI45981.1| Hect domain and RLD 3 [Mus musculus]
 gi|148877951|gb|AAI45979.1| Hect domain and RLD 3 [Mus musculus]
          Length = 1050

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA+V
Sbjct: 291 LMGSEVTQIACGRQHTLALV 310



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 166/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N +       VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLQGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  IKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKLL------------RTQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   SV     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 210 AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 269

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 270 SCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLG 328


>gi|195126363|ref|XP_002007640.1| GI13052 [Drosophila mojavensis]
 gi|193919249|gb|EDW18116.1| GI13052 [Drosophila mojavensis]
          Length = 1053

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 165/344 (47%), Gaps = 45/344 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDDGKTKT- 61
           +  WG+   GQLG+G  EE + +   +   P+K    V  +  G R++L +   GK    
Sbjct: 3   LYCWGNASHGQLGLGGIEEEQILTPSRI--PWKPDSAVNQIACGHRHTLFLTASGKVYAC 60

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                           P Q+  L +  I Q A G  H +A+ + G+ ++WG NE GQ G 
Sbjct: 61  GSNDYSQLGHELPTKRPLQIPELQDYVITQIACGSRHSMALSEWGQVFSWGDNECGQLGH 120

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPW--- 162
             ++          DIV   +    L+   V Q+A G  HS+ LT  G +++WG      
Sbjct: 121 ASDQ----------DIVKLPKIVRNLVSKTVVQIACGSNHSLALTCCGELYSWGSNLYGQ 170

Query: 163 ----PPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                P D++Q + P+R+  L    V  IA G  H+  + +  A++ WG N  GQLG  D
Sbjct: 171 LGVSSPNDLQQSNTPMRLTTLLGIPVSAIACGGNHSFLISKSSAVFGWGRNNCGQLGLND 230

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
              R+ P  ++ L  L +  +A G   S  LT +G V+  G G +G+LG G +  S++M+
Sbjct: 231 ETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTIEGGVFTCGAGAYGQLGHGFS--SNEML 288

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
           P+ V  L G  I QV+CG  H++AL    G I+ FG G  G+LG
Sbjct: 289 PRMVMELMGSTISQVACGNRHTLALVPSRGRIYGFGLGSSGQLG 332



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 141/323 (43%), Gaps = 64/323 (19%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREG 153
           Y WG   +GQ G         G I    I+ P R    P   V Q+A G  H++ LT  G
Sbjct: 4   YCWGNASHGQLG--------LGGIEEEQILTPSRIPWKPDSAVNQIACGHRHTLFLTASG 55

Query: 154 HVWTWGQPWPPGDIKQI------SVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWG 205
            V+  G      D  Q+        P+++  L+   +  IA G+ H++AL E G +++WG
Sbjct: 56  KVYACGS----NDYSQLGHELPTKRPLQIPELQDYVITQIACGSRHSMALSEWGQVFSWG 111

Query: 206 NNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           +NE GQLG    Q   + P  V+ L   T+V IA G  HS ALT  GE+Y WG   +G+L
Sbjct: 112 DNECGQLGHASDQDIVKLPKIVRNLVSKTVVQIACGSNHSLALTCCGELYSWGSNLYGQL 171

Query: 265 GFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG-- 321
           G    ND      P ++  L G  +  ++CGG HS  +++   +F +GR + G+LG    
Sbjct: 172 GVSSPNDLQQSNTPMRLTTLLGIPVSAIACGGNHSFLISKSSAVFGWGRNNCGQLGLNDE 231

Query: 322 -----------------RKVTTGQPMEVPINIP---------APRNAGDGVDR-----RW 350
                            R V  G    V + I          A    G G        R 
Sbjct: 232 TNRAYPTQLKTLRTLGVRFVACGDEFSVFLTIEGGVFTCGAGAYGQLGHGFSSNEMLPRM 291

Query: 351 IAKL-------VACGGRHTLAIV 366
           + +L       VACG RHTLA+V
Sbjct: 292 VMELMGSTISQVACGNRHTLALV 314



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  ++   + P ++       + Q++CG  H++ LT  G +++ G
Sbjct: 2   ELYCWGNASHGQLGLGGIEEEQILTPSRIPWKPDSAVNQIACGHRHTLFLTASGKVYACG 61

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+        P + P+ IP  ++        ++   +ACG RH++A+ EW
Sbjct: 62  SNDYSQLGHEL------PTKRPLQIPELQD--------YVITQIACGSRHSMALSEW 104



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 30/201 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ ++++  WG    GQLG+ +   R +   +K L    VR V  G   S+ +  +G   
Sbjct: 209 ISKSSAVFGWGRNNCGQLGLNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTIEGGVF 268

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR Y +G    
Sbjct: 269 TCGAGAYGQLGHGFSSNEMLPRMVMELMGSTISQVACGNRHTLALVPSRGRIYGFGLGSS 328

Query: 104 GQCGEEPERKDDTGRILRRDIVIP------QRCAPKL--IVRQVAAGGTHSVVLTREGHV 155
           GQ G    +  +  +++    V P      Q    K+  ++ Q+ +GG  S+V T     
Sbjct: 329 GQLGTRNTKSLNLPQLVIGPWVSPSGSTLLQSNDAKIASVIHQIFSGGDQSIVTTS---- 384

Query: 156 WTWGQPWPPGDIKQISVPVRV 176
             +    PP D +  S   ++
Sbjct: 385 -MFADKIPPVDCRVYSPKTQI 404


>gi|126330876|ref|XP_001375975.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Monodelphis
           domestica]
          Length = 1016

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/305 (32%), Positives = 156/305 (51%), Gaps = 32/305 (10%)

Query: 70  ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
           +L N  ++QAA G  H L +   G  ++ G N  GQ G +  R    GR  +   +  Q 
Sbjct: 33  SLGNQTLLQAACGERHSLLLLSDGTVWSCGNNSCGQLGRK--RCQKHGRPAQIQALETQD 90

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKL 184
                 +  V+ G  HS+ + +EG V++WG          + K++S +P ++  L   K+
Sbjct: 91  ------IVSVSCGKEHSLAICKEGRVFSWGSGSDGQLGIREFKKLSSIPKKIDELSSFKI 144

Query: 185 IAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGG 241
           I V  G +H++AL +DG +++WG N +GQLG G+  P ++ P  V+ L G+ L  +AAGG
Sbjct: 145 IQVSCGHYHSIALAQDGRVFSWGKNNHGQLGLGENVPSQASPQWVKSLDGIPLAQVAAGG 204

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--PQKVNLLAGEDIVQVSCGGTHSV 299
            HS AL+  G  YGWGR   G+L      +S++ +  P  +  L    +  +SCG  H+ 
Sbjct: 205 AHSFALSFSGTSYGWGRNNAGQLALSGKKESAEQISKPFSIGELKRLQVTYISCGDEHTA 264

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
            LT+DG +F+FG  D G+L  GR++ +G        +  P+     V    I    ACG 
Sbjct: 265 VLTQDGKVFTFGSNDSGQL--GRQLISG--------MKGPQVVDSAVSFSQI----ACGS 310

Query: 360 RHTLA 364
            HTLA
Sbjct: 311 YHTLA 315



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 26/282 (9%)

Query: 96  YAWGGNEYGQCG--EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           Y WG N  GQ G    P  K    R  R   +  Q       + Q A G  HS++L  +G
Sbjct: 3   YCWGDNSSGQLGIPAVPRAKARAVRCRRGASLGNQ------TLLQAACGERHSLLLLSDG 56

Query: 154 HVWTWGQPWPPGDI-----KQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
            VW+ G     G +     ++   P ++Q LE   +++V  G  H+LA+ ++G +++WG+
Sbjct: 57  TVWSCGNN-SCGQLGRKRCQKHGRPAQIQALETQDIVSVSCGKEHSLAICKEGRVFSWGS 115

Query: 207 NEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
              GQLG  + +  S  P  +  LS   ++ ++ G +HS AL  DG V+ WG+  HG+LG
Sbjct: 116 GSDGQLGIREFKKLSSIPKKIDELSSFKIIQVSCGHYHSIALAQDGRVFSWGKNNHGQLG 175

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            G+N   S+  PQ V  L G  + QV+ GG HS AL+  G  + +GR + G+L    K  
Sbjct: 176 LGEN-VPSQASPQWVKSLDGIPLAQVAAGGAHSFALSFSGTSYGWGRNNAGQLALSGKKE 234

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           + + +  P +I        G  +R     ++CG  HT  + +
Sbjct: 235 SAEQISKPFSI--------GELKRLQVTYISCGDEHTAVLTQ 268



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 146/341 (42%), Gaps = 47/341 (13%)

Query: 9   AWGSGEDGQLGI---GNNEEREWVCVVKA-LEPYKVRSVVAGSRNSLAICDDG------- 57
            WG    GQLGI      + R   C   A L    +     G R+SL +  DG       
Sbjct: 4   CWGDNSSGQLGIPAVPRAKARAVRCRRGASLGNQTLLQAACGERHSLLLLSDGTVWSCGN 63

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                    + +    P+Q+ AL    IV  + G  H LA+  +GR ++WG    GQ G 
Sbjct: 64  NSCGQLGRKRCQKHGRPAQIQALETQDIVSVSCGKEHSLAICKEGRVFSWGSGSDGQLGI 123

Query: 109 EPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTW-----GQP 161
              +K  +         IP++        + QV+ G  HS+ L ++G V++W     GQ 
Sbjct: 124 REFKKLSS---------IPKKIDELSSFKIIQVSCGHYHSIALAQDGRVFSWGKNNHGQL 174

Query: 162 WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG---- 215
               ++   + P  V+ L+ + L  +A G  H+ AL   G  + WG N  GQL       
Sbjct: 175 GLGENVPSQASPQWVKSLDGIPLAQVAAGGAHSFALSFSGTSYGWGRNNAGQLALSGKKE 234

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
             +  S+P  +  L  L +  I+ G  H+  LT DG+V+ +G  + G+L  G    S   
Sbjct: 235 SAEQISKPFSIGELKRLQVTYISCGDEHTAVLTQDGKVFTFGSNDSGQL--GRQLISGMK 292

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDH 315
            PQ V+  +     Q++CG  H++A +   G + SFG G  
Sbjct: 293 GPQVVD--SAVSFSQIACGSYHTLAYSCTTGQVISFGCGSQ 331


>gi|148666329|gb|EDK98745.1| hect domain and RLD 3, isoform CRA_a [Mus musculus]
          Length = 913

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA+V
Sbjct: 291 LMGSEVTQIACGRQHTLALV 310



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 166/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N +       VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLQGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  IKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   SV     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAK 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|157820833|ref|NP_001102101.1| probable E3 ubiquitin-protein ligase HERC3 [Rattus norvegicus]
 gi|149033223|gb|EDL88024.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
           norvegicus]
 gi|149033224|gb|EDL88025.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
           norvegicus]
 gi|149033225|gb|EDL88026.1| hect domain and RLD 3 (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 1050

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA+V
Sbjct: 291 LMGSEVTQIACGRQHTLALV 310



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 166/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N +       VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLQGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  IKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKLL------------RTQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   SV     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 210 AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 269

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 270 SCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLG 328


>gi|443690304|gb|ELT92472.1| hypothetical protein CAPTEDRAFT_172844 [Capitella teleta]
          Length = 4817

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 182/389 (46%), Gaps = 51/389 (13%)

Query: 10   WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----------- 58
            WG    GQLG     + +     + L   +   ++ G +   +I  DGK           
Sbjct: 3941 WGHNHRGQLGGVEGAKVKLPVSCETLATMRPVQLIGGEQTLFSITGDGKVCATGYGAGGR 4000

Query: 59   -----TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 T +   P+ + ++ +  I + AI  GG HCLA+  +G  Y+WG  E G+ G    
Sbjct: 4001 LGIGGTDSVATPTLIESIQHVFIRKVAINSGGKHCLALSAEGEVYSWGEGEDGKLGHGNR 4060

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
               D  R +       +    K +V  +AAGG HS  +T  G +++WG+        GD 
Sbjct: 4061 SPCDRPRAI-------ESLRGKEVV-DIAAGGAHSACITSTGELYSWGKGRYGRLGHGDS 4112

Query: 168  KQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            +  + P  V  L+  ++  V    G    L + +D ++W+WG+ +YG+LG G +     P
Sbjct: 4113 EDQTKPKLVDALKGYRVTDVACGSGDAQTLCITDDDSVWSWGDGDYGKLGRGGSDGCKVP 4172

Query: 224  IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            + +  L GL ++ +  G   S ALT  G VY WG+G++ RLG G  D   +  P++   L
Sbjct: 4173 MKIDALQGLGVIKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGTEDHIRR--PRRCTTL 4230

Query: 284  AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
             G+ IV ++CG  H VA T  G ++++G  D G+LG G    T   ++ P  + A +  G
Sbjct: 4231 QGKKIVSIACGSLHCVACTDAGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAALQ--G 4284

Query: 344  DGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
              ++R      VACG  H+LA   W T +
Sbjct: 4285 KKINR------VACGSAHSLA---WSTNK 4304



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 186/396 (46%), Gaps = 52/396 (13%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            T +  WG  +  QLG     + +   + + L   K   +V GS++   +  DGK      
Sbjct: 2914 TQVFVWGLNDKDQLGGPKGSKIKTPGINETLSTLKCVQIVGGSKSLFCVTQDGKLFACGE 2973

Query: 59   ---------TKTENIPS--QVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                         N+P   Q+ +LS   I + A+  GG H +A+   G+ ++WG  + G+
Sbjct: 2974 ATNGRLGLGISAGNVPQPRQLTSLSQYVIKKVAVHSGGRHAMALTVDGKVFSWGEGDDGK 3033

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      VR +A GG+HS  +   G ++TWG      
Sbjct: 3034 LGHFSRMNCDKPRLI--EALRSKR------VRDIACGGSHSAAIISNGDLYTWGLGEYGR 3085

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ LE  ++I V         LAL + G +++WG+ ++G+LG G +
Sbjct: 3086 LGHGDNTTQLRPKLVKALEGQRVIQVALGSRDAQTLALTDSGTVYSWGDGDFGKLGRGGS 3145

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            +  S P P++ L+G+ +  I  G   S ALT  G+V+ WG+G++ RLG G +    K  P
Sbjct: 3146 EGCSVPHPIERLNGVGVCQIECGAQFSLALTKSGQVWTWGKGDYFRLGHGTDAHVRK--P 3203

Query: 278  QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            Q V  L G+ +  V+ G  H +++  +G ++++G  DHG+ G        +P  V     
Sbjct: 3204 QLVETLKGKKVTHVAVGALHCLSVLDNGQVYAWGDNDHGQQGNSTTTVNRKPALV----- 3258

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                   G++   I++ VACG  H++A   W T +S
Sbjct: 3259 ------QGLEGCKISR-VACGSSHSIA---WCTLDS 3284



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 34/280 (12%)

Query: 67  QVNALSNTKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           +++ L++ +I++ A    G HCLA+  +G  Y+WG  ++G+ G         G  +  D 
Sbjct: 469 EISTLADIEIIKLAAHSEGSHCLALTSEGDVYSWGNGDFGKLGH--------GDTVTCD- 519

Query: 125 VIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
                 +P LI       V  VA G  HS  +T  G ++TWG+        G  + I  P
Sbjct: 520 ------SPMLINELHGKSVVNVACGSHHSAAITASGELFTWGRGSFGRLGLGSTEDILTP 573

Query: 174 VRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             V GL  V ++ V    G    +AL + G++++WG+ EYG+LG G ++    P  V  L
Sbjct: 574 ALVSGLLGVTVVDVACGSGDAQTIALADTGSVYSWGDGEYGKLGRGGSEGCKAPKLVDKL 633

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            GL +  +  G  +S A+  +G V+ WG GE  +LG G  +      P++V  LAG+ + 
Sbjct: 634 QGLDVTRVYCGPQYSAAVCKNGAVFTWGNGEGYKLGHGTEEHVR--FPRQVETLAGKHVT 691

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            +S G  H +A T +G + S+GR D G+LG G      +P
Sbjct: 692 SLSLGSHHCLATTEEGELLSWGRNDKGQLGEGHTGLKAEP 731



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 105/189 (55%), Gaps = 8/189 (4%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA-FHNLA 194
           + QVA      ++L R G V+       P  + +IS    +  +E +KL A     H LA
Sbjct: 436 IIQVACSSNSLLILLRTGRVYKMTNSAEPQSMHEIST---LADIEIIKLAAHSEGSHCLA 492

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  +G +++WGN ++G+LG GDT     P+ +  L G ++V++A G  HS A+T  GE++
Sbjct: 493 LTSEGDVYSWGNGDFGKLGHGDTVTCDSPMLINELHGKSVVNVACGSHHSAAITASGELF 552

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGR 312
            WGRG  GRLG G  +    + P  V+ L G  +V V+CG     ++AL   G ++S+G 
Sbjct: 553 TWGRGSFGRLGLGSTE--DILTPALVSGLLGVTVVDVACGSGDAQTIALADTGSVYSWGD 610

Query: 313 GDHGRLGYG 321
           G++G+LG G
Sbjct: 611 GEYGKLGRG 619



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 130/265 (49%), Gaps = 26/265 (9%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           I+Q A      L +   GR Y    +       EP+   +   +   +I+       KL 
Sbjct: 436 IIQVACSSNSLLILLRTGRVYKMTNSA------EPQSMHEISTLADIEII-------KLA 482

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGA 189
                + G+H + LT EG V++WG         GD      P+ +  L  + V  +A G+
Sbjct: 483 AH---SEGSHCLALTSEGDVYSWGNGDFGKLGHGDTVTCDSPMLINELHGKSVVNVACGS 539

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG--WHSTAL 247
            H+ A+   G L+ WG   +G+LG G T+    P  V GL G+T+VD+A G     + AL
Sbjct: 540 HHSAAITASGELFTWGRGSFGRLGLGSTEDILTPALVSGLLGVTVVDVACGSGDAQTIAL 599

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            D G VY WG GE+G+LG G ++      P+ V+ L G D+ +V CG  +S A+ ++G +
Sbjct: 600 ADTGSVYSWGDGEYGKLGRGGSEGCK--APKLVDKLQGLDVTRVYCGPQYSAAVCKNGAV 657

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEV 332
           F++G G+  +LG+G +     P +V
Sbjct: 658 FTWGNGEGYKLGHGTEEHVRFPRQV 682



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 135/313 (43%), Gaps = 76/313 (24%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
            + +WG GEDG+LG GN                               CD         P 
Sbjct: 4044 VYSWGEGEDGKLGHGNRSP----------------------------CDR--------PR 4067

Query: 67   QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
             + +L   ++V  A GG H   +   G  Y+WG   YG+ G   + +D T          
Sbjct: 4068 AIESLRGKEVVDIAAGGAHSACITSTGELYSWGKGRYGRLGHG-DSEDQT---------- 4116

Query: 127  PQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWGQPWPPGDIKQI------- 170
                 PKL+       V  VA G     ++ +T +  VW+WG     GD  ++       
Sbjct: 4117 ----KPKLVDALKGYRVTDVACGSGDAQTLCITDDDSVWSWGD----GDYGKLGRGGSDG 4168

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L+ + +I V  G+  ++AL + GA++ WG  +Y +LG G      +P    
Sbjct: 4169 CKVPMKIDALQGLGVIKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGTEDHIRRPRRCT 4228

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
             L G  +V IA G  H  A TD GEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4229 TLQGKKIVSIACGSLHCVACTDAGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4286

Query: 288  IVQVSCGGTHSVA 300
            I +V+CG  HS+A
Sbjct: 4287 INRVACGSAHSLA 4299



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 39/292 (13%)

Query: 90   DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
            D Q + + WG N+  Q G     K  T  I   + +   +C       Q+  G      +
Sbjct: 2911 DIQTQVFVWGLNDKDQLGGPKGSKIKTPGI--NETLSTLKCV------QIVGGSKSLFCV 2962

Query: 150  TREGHVWTWGQP--------WPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQE 197
            T++G ++  G+            G++ Q   P ++  L Q  +K +AV  G  H +AL  
Sbjct: 2963 TQDGKLFACGEATNGRLGLGISAGNVPQ---PRQLTSLSQYVIKKVAVHSGGRHAMALTV 3019

Query: 198  DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            DG +++WG  + G+LG        +P  ++ L    + DIA GG HS A+  +G++Y WG
Sbjct: 3020 DGKVFSWGEGDDGKLGHFSRMNCDKPRLIEALRSKRVRDIACGGSHSAAIISNGDLYTWG 3079

Query: 258  RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDH 315
             GE+GRLG GDN  ++++ P+ V  L G+ ++QV+ G     ++ALT  G ++S+G GD 
Sbjct: 3080 LGEYGRLGHGDN--TTQLRPKLVKALEGQRVIQVALGSRDAQTLALTDSGTVYSWGDGDF 3137

Query: 316  GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G+LG G       P       P  R  G GV +      + CG + +LA+ +
Sbjct: 3138 GKLGRGGSEGCSVPH------PIERLNGVGVCQ------IECGAQFSLALTK 3177



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 127/296 (42%), Gaps = 57/296 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S   + +WG+G+ G+LG G+    +   ++  L    V +V  GS +S AI   G+  
Sbjct: 493 LTSEGDVYSWGNGDFGKLGHGDTVTCDSPMLINELHGKSVVNVACGSHHSAAITASGELF 552

Query: 60  -------------KTENI--PSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
                         TE+I  P+ V+ L    +V  A G      +A+ D G  Y+WG  E
Sbjct: 553 TWGRGSFGRLGLGSTEDILTPALVSGLLGVTVVDVACGSGDAQTIALADTGSVYSWGDGE 612

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRC-APKLI-------VRQVAAGGTHSVVLTREGH 154
           YG+ G    R    G            C APKL+       V +V  G  +S  + + G 
Sbjct: 613 YGKLG----RGGSEG------------CKAPKLVDKLQGLDVTRVYCGPQYSAAVCKNGA 656

Query: 155 VWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           V+TWG         G  + +  P +V+ L  + V  +++G+ H LA  E+G L +WG N+
Sbjct: 657 VFTWGNGEGYKLGHGTEEHVRFPRQVETLAGKHVTSLSLGSHHCLATTEEGELLSWGRND 716

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            GQLG G T  +++P     L G  ++ I              + + W R   G +
Sbjct: 717 KGQLGEGHTGLKAEPAFAASLLGKCIIGITCSS---------AQTFAWSRPSRGTM 763



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 56/188 (29%)

Query: 199  GALWAWGNNEYGQLG----------------------------------TGD-------- 216
            G +W WG+N  GQLG                                  TGD        
Sbjct: 3936 GQIWGWGHNHRGQLGGVEGAKVKLPVSCETLATMRPVQLIGGEQTLFSITGDGKVCATGY 3995

Query: 217  ----------TQPRSQPIPVQGLSGLTL--VDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                      T   + P  ++ +  + +  V I +GG H  AL+ +GEVY WG GE G+L
Sbjct: 3996 GAGGRLGIGGTDSVATPTLIESIQHVFIRKVAINSGGKHCLALSAEGEVYSWGEGEDGKL 4055

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            G G+     +  P+ +  L G+++V ++ GG HS  +T  G ++S+G+G +GRLG+G   
Sbjct: 4056 GHGNRSPCDR--PRAIESLRGKEVVDIAAGGAHSACITSTGELYSWGKGRYGRLGHGDSE 4113

Query: 325  TTGQPMEV 332
               +P  V
Sbjct: 4114 DQTKPKLV 4121



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 38/221 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--RNSLAICDD-- 56
            + ST  + +WG G  G+LG G++E++    +V AL+ Y+V  V  GS    +L I DD  
Sbjct: 4090 ITSTGELYSWGKGRYGRLGHGDSEDQTKPKLVDALKGYRVTDVACGSGDAQTLCITDDDS 4149

Query: 57   --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G +    +P +++AL    +++   G    +A+   G  Y WG  +
Sbjct: 4150 VWSWGDGDYGKLGRGGSDGCKVPMKIDALQGLGVIKVECGSQFSVALTKSGAVYTWGKGD 4209

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAP---KLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y + G   E        +RR    P+RC     K IV  +A G  H V  T  G V+TWG
Sbjct: 4210 YHRLGHGTEDH------IRR----PRRCTTLQGKKIV-SIACGSLHCVACTDAGEVYTWG 4258

Query: 160  Q----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                     G    I  P  V  L+  ++  +A G+ H+LA
Sbjct: 4259 DNDEGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHSLA 4299



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 32/168 (19%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRG 259
           L+AWG      L T D    + P  +   + L  ++ +A        L   G VY     
Sbjct: 407 LFAWG-----WLSTSDATCHNTPTTIPLPNDLDDIIQVACSSNSLLILLRTGRVYKM--- 458

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG--GTHSVALTRDGHIFSFGRGDHGR 317
                     + +      +++ LA  +I++++    G+H +ALT +G ++S+G GD G+
Sbjct: 459 ---------TNSAEPQSMHEISTLADIEIIKLAAHSEGSHCLALTSEGDVYSWGNGDFGK 509

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           LG+G  VT   PM +           + +  + +   VACG  H+ AI
Sbjct: 510 LGHGDTVTCDSPMLI-----------NELHGKSVVN-VACGSHHSAAI 545


>gi|149033226|gb|EDL88027.1| hect domain and RLD 3 (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 909

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  I + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA+V
Sbjct: 291 LMGSEVTQIACGRQHTLALV 310



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 166/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI +N +       VC  + +    ++ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISSNLQGIVAEPQVC--RFVSDRSIKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           +++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  IKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKLL------------RTQKVVYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   SV     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAK 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|442317911|ref|YP_007357932.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441485553|gb|AGC42248.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 1451

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 168/347 (48%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG+   GQLG G   +R     V  L+   V +V AG  ++LA+  DG        
Sbjct: 219 TVWAWGANGSGQLGDGTYIQRLAPTQVSQLQ--GVSAVTAGLYHALALRSDGTVWAWGSN 276

Query: 59  --------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T T+   P QV +++  K V A   G   L + D G  +AWG N  GQ G  
Sbjct: 277 SSGQMGDGTWTDRPSPVQVTSIARAKAVAAQDAG--SLVLLDDGGVFAWGLNSQGQLGIG 334

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                        D  +P R      V  +AAG  H+VVL  +G +WTWG         G
Sbjct: 335 TT----------ADSPLPVRVRGLGAVTSLAAGTQHAVVLRADGTLWTWGHGATGQLGHG 384

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             +++  P  V  L  V  +A G+FH++A   DG++W WG N  GQLG G T  R  P+ 
Sbjct: 385 SSERMLSPEVVTRLSNVASVASGSFHSVAALSDGSVWTWGRNTNGQLGDGTTTERHLPVR 444

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLSG  +V ++A G HS AL  DG V+GWGR   G++  GD     +  P +V  L+ 
Sbjct: 445 VPGLSG--VVSVSASGHHSFALRSDGTVWGWGRNAQGQM--GDGTTKDRASPARVEGLS- 499

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  ++ GG+H VAL  DG ++++G    G+LG G       P++V
Sbjct: 500 -SVKALASGGSHMVALRTDGTVWTWGYNGAGQLGDGTTTDRRAPVQV 545



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 162/352 (46%), Gaps = 40/352 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           + S  ++ AWGS   GQ+G G   +R     V+     + ++V A    SL + DD    
Sbjct: 264 LRSDGTVWAWGSNSSGQMGDGTWTDRP--SPVQVTSIARAKAVAAQDAGSLVLLDDGGVF 321

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       G T    +P +V  L    +   A G  H + +   G  + WG    G
Sbjct: 322 AWGLNSQGQLGIGTTADSPLPVRVRGLG--AVTSLAAGTQHAVVLRADGTLWTWGHGATG 379

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G     +          ++ P+       V  VA+G  HSV    +G VWTWG+    
Sbjct: 380 QLGHGSSER----------MLSPEVVTRLSNVASVASGSFHSVAALSDGSVWTWGRNTNG 429

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   +  +PVRV GL  V  ++    H+ AL+ DG +W WG N  GQ+G G T+ R
Sbjct: 430 QLGDGTTTERHLPVRVPGLSGVVSVSASGHHSFALRSDGTVWGWGRNAQGQMGDGTTKDR 489

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P  V+GLS  ++  +A+GG H  AL  DG V+ WG    G+L  GD   + +  P +V
Sbjct: 490 ASPARVEGLS--SVKALASGGSHMVALRTDGTVWTWGYNGAGQL--GDGTTTDRRAPVQV 545

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             L+G  +  V+ G   S+AL  DG ++++G G  G+LG G  V    P++V
Sbjct: 546 TGLSG--VTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDGAGVQRASPVQV 595



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 157/334 (47%), Gaps = 38/334 (11%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
            ++  WG   DGQLG G  E R     V  L    + +V   +R++LA+  DG      +N
Sbjct: 1124 TVQTWGGNADGQLGDGTTESRATPITVAGLG--AMVAVAPAARHTLALRSDGTVWAWGDN 1181

Query: 64   IPSQVNALSNT------------KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               Q+   SNT            K+   A G +H LAV + G  +AWG N +GQ G+   
Sbjct: 1182 TFGQLGDGSNTRRTLPVQVVGLEKVTAIAAGSYHSLAVREDGTVWAWGYNVFGQLGD--- 1238

Query: 112  RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                 G +  R   +P R         VA G  HS++L  +G +W  G         G  
Sbjct: 1239 -----GTMDAR--AVPTRMLGLDGAVAVAGGEYHSLMLRFDGTLWATGNNSHGQLGEGTF 1291

Query: 168  KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                 P +V  L+QV+ +  G +H++AL+EDG +W WG+N  GQLG G    R  P PV 
Sbjct: 1292 TNRLSPFQVVELDQVRTVRAGGYHSVALREDGTVWTWGHNGQGQLGDGTVTTRRVPAPVP 1351

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL+   +  + AG  H+ A+    E + WGR  HG+LG GD+  S ++ P  V  L G  
Sbjct: 1352 GLT--AIASVGAGTSHTFAVGS--ETWAWGRNSHGQLGTGDS--SDRLEPTLVKGLHG-- 1403

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            +  V  GG  SVA   DG   S+G   HG LG G
Sbjct: 1404 VKSVLAGGDFSVAQGADGSAMSWGTNVHGTLGIG 1437



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 178/393 (45%), Gaps = 75/393 (19%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
            ++ +WG+ + GQLG G N  R     V+ L    V++V AG+ + +A+            
Sbjct: 969  TVWSWGANDSGQLGDGTNVARTTPKPVQDLA--DVKAVTAGAHHVVAVRHDGTVWGWGAN 1026

Query: 54   ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG       P +V  L N   V+ + G  H LA+    RA +WG +EYGQ G+ 
Sbjct: 1027 AFGQVGDGTHFWRFRPVRVEGLLNA--VETSAGEQHSLALLGDERALSWGSHEYGQLGDA 1084

Query: 110  ---PERKDDTGRILRRDIVIP-------------------------------------QR 129
               P  +    ++    +++P                                      R
Sbjct: 1085 ESGPSLEPVGVKLPSSKVLVPAVSVSAWHQHAAALLADGTVQTWGGNADGQLGDGTTESR 1144

Query: 130  CAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
              P  +     +  VA    H++ L  +G VW WG         G   + ++PV+V GLE
Sbjct: 1145 ATPITVAGLGAMVAVAPAARHTLALRSDGTVWAWGDNTFGQLGDGSNTRRTLPVQVVGLE 1204

Query: 181  QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            +V  IA G++H+LA++EDG +WAWG N +GQLG G    R+ P  + GL G   V +A G
Sbjct: 1205 KVTAIAAGSYHSLAVREDGTVWAWGYNVFGQLGDGTMDARAVPTRMLGLDG--AVAVAGG 1262

Query: 241  GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             +HS  L  DG ++  G   HG+LG G    ++++ P +V  L  + +  V  GG HSVA
Sbjct: 1263 EYHSLMLRFDGTLWATGNNSHGQLGEG--TFTNRLSPFQVVEL--DQVRTVRAGGYHSVA 1318

Query: 301  LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            L  DG ++++G    G+LG G   T   P  VP
Sbjct: 1319 LREDGTVWTWGHNGQGQLGDGTVTTRRVPAPVP 1351



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 142/272 (52%), Gaps = 24/272 (8%)

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
           SQ  A + +K+   A G  H L V   G  +AWGGN  GQ G        TG +  + +V
Sbjct: 43  SQALASATSKV---AAGAQHSLYVTQAGTVWAWGGNGSGQLG--------TGSVSFQRVV 91

Query: 126 IPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQIS--VPVRVQGLE 180
             Q   P L  V  +AAG  HS+ L  +  VWTWG       GD   +    P +V GL 
Sbjct: 92  AQQ--VPGLTDVTSIAAGDAHSLALRADRTVWTWGGNNAGQVGDGTNVDRPTPQKVPGLS 149

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            V  +A G FH+LAL+ DG +WAWG+N YGQLG G +QP   P  V GL+G  +V +AAG
Sbjct: 150 DVVAVAAGEFHSLALRADGTVWAWGSNFYGQLGRGHSQPGPSPAQVVGLTG--VVALAAG 207

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              S A+  DG V+ WG    G+L  GD     ++ P +V+ L G  +  V+ G  H++A
Sbjct: 208 FDFSLAVRSDGTVWAWGANGSGQL--GDGTYIQRLAPTQVSQLQG--VSAVTAGLYHALA 263

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L  DG ++++G    G++G G       P++V
Sbjct: 264 LRSDGTVWAWGSNSSGQMGDGTWTDRPSPVQV 295



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 160/335 (47%), Gaps = 40/335 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + AWG    GQLGIG   +      V+ L    V S+ AG+++++ +  DG         
Sbjct: 320 VFAWGLNSQGQLGIGTTADSPLPVRVRGLG--AVTSLAAGTQHAVVLRADGTLWTWGHGA 377

Query: 60  -------KTENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +E +  P  V  LSN  +   A G +H +A    G  + WG N  GQ G+  
Sbjct: 378 TGQLGHGSSERMLSPEVVTRLSN--VASVASGSFHSVAALSDGSVWTWGRNTNGQLGD-- 433

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                 G    R +  P R      V  V+A G HS  L  +G VW WG+        G 
Sbjct: 434 ------GTTTERHL--PVRVPGLSGVVSVSASGHHSFALRSDGTVWGWGRNAQGQMGDGT 485

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            K  + P RV+GL  VK +A G  H +AL+ DG +W WG N  GQLG G T  R  P+ V
Sbjct: 486 TKDRASPARVEGLSSVKALASGGSHMVALRTDGTVWTWGYNGAGQLGDGTTTDRRAPVQV 545

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GLSG+T   +AAG + S AL  DG V+ WG G  G+L  GD     +  P +V  L   
Sbjct: 546 TGLSGVT--SVAAGAYFSLALRTDGTVWAWGDGFEGQL--GDGAGVQRASPVQVTGL--T 599

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            +V+++ G  H +A+  DG ++++G    G++G G
Sbjct: 600 RVVKLAAGAAHGLAVRDDGTVWAWGDNTEGQMGDG 634



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 163/346 (47%), Gaps = 36/346 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++  WG    GQ+G G N +R     V  L    V +V AG  +SLA+  DG        
Sbjct: 119 TVWTWGGNNAGQVGDGTNVDRPTPQKVPGLS--DVVAVAAGEFHSLALRADGTVWAWGSN 176

Query: 58  ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 +  ++  PS    +  T +V  A G    LAV   G  +AWG N  GQ G+   
Sbjct: 177 FYGQLGRGHSQPGPSPAQVVGLTGVVALAAGFDFSLAVRSDGTVWAWGANGSGQLGD--- 233

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                G  ++R  + P + +    V  V AG  H++ L  +G VW WG         G  
Sbjct: 234 -----GTYIQR--LAPTQVSQLQGVSAVTAGLYHALALRSDGTVWAWGSNSSGQMGDGTW 286

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                PV+V  + + K +A     +L L +DG ++AWG N  GQLG G T     P+ V+
Sbjct: 287 TDRPSPVQVTSIARAKAVAAQDAGSLVLLDDGGVFAWGLNSQGQLGIGTTADSPLPVRVR 346

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL  +T   +AAG  H+  L  DG ++ WG G  G+LG G +++   + P+ V  L+  +
Sbjct: 347 GLGAVT--SLAAGTQHAVVLRADGTLWTWGHGATGQLGHGSSER--MLSPEVVTRLS--N 400

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +  V+ G  HSVA   DG ++++GR  +G+LG G       P+ VP
Sbjct: 401 VASVASGSFHSVAALSDGSVWTWGRNTNGQLGDGTTTERHLPVRVP 446



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 150/338 (44%), Gaps = 39/338 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G+   +  V   +      V S+ AG  +SLA+            
Sbjct: 68  TVWAWGGNGSGQLGTGSVSFQR-VVAQQVPGLTDVTSIAAGDAHSLALRADRTVWTWGGN 126

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG       P +V  LS+  +V  A G +H LA+   G  +AWG N YGQ G  
Sbjct: 127 NAGQVGDGTNVDRPTPQKVPGLSD--VVAVAAGEFHSLALRADGTVWAWGSNFYGQLGRG 184

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
             +   +          P +      V  +AAG   S+ +  +G VW WG         G
Sbjct: 185 HSQPGPS----------PAQVVGLTGVVALAAGFDFSLAVRSDGTVWAWGANGSGQLGDG 234

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q   P +V  L+ V  +  G +H LAL+ DG +WAWG+N  GQ+G G    R  P P
Sbjct: 235 TYIQRLAPTQVSQLQGVSAVTAGLYHALALRSDGTVWAWGSNSSGQMGDGTWTDR--PSP 292

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQ  S      +AA    S  L DDG V+ WG    G+LG G    S   +P +V  L  
Sbjct: 293 VQVTSIARAKAVAAQDAGSLVLLDDGGVFAWGLNSQGQLGIGTTADSP--LPVRVRGLGA 350

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
             +  ++ G  H+V L  DG ++++G G  G+LG+G  
Sbjct: 351 --VTSLAAGTQHAVVLRADGTLWTWGHGATGQLGHGSS 386



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 170/388 (43%), Gaps = 55/388 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +A   ++ +WG    GQLG G    R +   V+ L  + V +V+AG  +S+ +  DG   
Sbjct: 814  LACDGTVWSWGGNSQGQLGDGGVTSRAYPAKVEGL--WGVVAVLAGGDSSMVLRADGTVW 871

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            T                   P +V  L+   I    +G  H L V   G  +AWG N  G
Sbjct: 872  TWGANGSGQLGDGTLGDRASPLEVKGLAG--IATGVMGEAHALVVSQDGTVWAWGANGRG 929

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPW 162
            Q G+       +          P R A       V+ G  +S+ +  +G VW+WG     
Sbjct: 930  QLGDGTTTSSAS----------PVRVAGLSAAMNVSVGQAYSLAVLPDGTVWSWGANDSG 979

Query: 163  PPGDIKQI--SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              GD   +  + P  VQ L  VK +  GA H +A++ DG +W WG N +GQ+G G    R
Sbjct: 980  QLGDGTNVARTTPKPVQDLADVKAVTAGAHHVVAVRHDGTVWGWGANAFGQVGDGTHFWR 1039

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             +P+ V+GL  L  V+ +AG  HS AL  D     WG  E+G+L  GD +    + P  V
Sbjct: 1040 FRPVRVEGL--LNAVETSAGEQHSLALLGDERALSWGSHEYGQL--GDAESGPSLEPVGV 1095

Query: 281  NLLAGEDI---VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             L + + +   V VS    H+ AL  DG + ++G    G+LG G   +   P+ V     
Sbjct: 1096 KLPSSKVLVPAVSVSAWHQHAAALLADGTVQTWGGNADGQLGDGTTESRATPITV----- 1150

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLAI 365
                AG G         VA   RHTLA+
Sbjct: 1151 ----AGLGA-----MVAVAPAARHTLAL 1169



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 163/345 (47%), Gaps = 36/345 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALE-----------PYKVRS---VVAGSRNSL 51
           S+  WG   +GQLG G   ER     V  L             + +RS   V    RN+ 
Sbjct: 419 SVWTWGRNTNGQLGDGTTTERHLPVRVPGLSGVVSVSASGHHSFALRSDGTVWGWGRNAQ 478

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG TK    P++V  LS+ K +  A GG H +A+   G  + WG N  GQ G+   
Sbjct: 479 GQMGDGTTKDRASPARVEGLSSVKAL--ASGGSHMVALRTDGTVWTWGYNGAGQLGDGTT 536

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                      D   P +      V  VAAG   S+ L  +G VW WG  +      G  
Sbjct: 537 T----------DRRAPVQVTGLSGVTSVAAGAYFSLALRTDGTVWAWGDGFEGQLGDGAG 586

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            Q + PV+V GL +V  +A GA H LA+++DG +WAWG+N  GQ+G G    R + + V 
Sbjct: 587 VQRASPVQVTGLTRVVKLAAGAAHGLAVRDDGTVWAWGDNTEGQMGDGSWSDRFRAVQVY 646

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+G++   +  G +HS AL  DG +  WG   +G+  FGD   + ++V   V  L+G  
Sbjct: 647 GLTGVS--SVVGGLYHSMALAQDGTLRAWGGNAYGQ--FGDGGVTPRVVAGAVPGLSGIK 702

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++  S    H +A+  DG + ++G    G+LG G    +  P++V
Sbjct: 703 LLGASY--LHVLAVREDGMLLTWGYNRFGQLGLGAAGWSSLPVQV 745



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 136/302 (45%), Gaps = 40/302 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
            + S  ++ AWG    GQLG G+N  R     V  LE  KV ++ AGS +SLA+ +DG   
Sbjct: 1169 LRSDGTVWAWGDNTFGQLGDGSNTRRTLPVQVVGLE--KVTAIAAGSYHSLAVREDGTVW 1226

Query: 60   ---------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                               +P+++  L     V  A G +H L +   G  +A G N +G
Sbjct: 1227 AWGYNVFGQLGDGTMDARAVPTRMLGLDGA--VAVAGGEYHSLMLRFDGTLWATGNNSHG 1284

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
            Q GE        G    R  + P +      VR V AGG HSV L  +G VWTWG     
Sbjct: 1285 QLGE--------GTFTNR--LSPFQVVELDQVRTVRAGGYHSVALREDGTVWTWGHNGQG 1334

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                G +    VP  V GL  +  +  G  H  A+  +   WAWG N +GQLGTGD+  R
Sbjct: 1335 QLGDGTVTTRRVPAPVPGLTAIASVGAGTSHTFAVGSE--TWAWGRNSHGQLGTGDSSDR 1392

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             +P  V+GL G+    + AGG  S A   DG    WG   HG LG G   +  + VP  V
Sbjct: 1393 LEPTLVKGLHGVK--SVLAGGDFSVAQGADGSAMSWGTNVHGTLGIGLPGQ--RTVPGAV 1448

Query: 281  NL 282
             L
Sbjct: 1449 TL 1450



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 165/362 (45%), Gaps = 56/362 (15%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI-CD--------- 55
            +++AWG    GQLG G+   R    + + L     R+  AG ++SL + CD         
Sbjct: 769  TVLAWGQNTSGQLGDGSTTHRASPVLARNLP--CARAASAGRQHSLVLACDGTVWSWGGN 826

Query: 56   ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG   +   P++V  L    +V    GG   + +   G  + WG N  GQ G  
Sbjct: 827  SQGQLGDGGVTSRAYPAKVEGLWG--VVAVLAGGDSSMVLRADGTVWTWGANGSGQLG-- 882

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAA------GGTHSVVLTREGHVWTWGQ--- 160
                         D  +  R +P L V+ +A       G  H++V++++G VW WG    
Sbjct: 883  -------------DGTLGDRASP-LEVKGLAGIATGVMGEAHALVVSQDGTVWAWGANGR 928

Query: 161  -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                 G     + PVRV GL     ++VG  ++LA+  DG +W+WG N+ GQLG G    
Sbjct: 929  GQLGDGTTTSSASPVRVAGLSAAMNVSVGQAYSLAVLPDGTVWSWGANDSGQLGDGTNVA 988

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            R+ P PVQ L+ +  V   AG  H  A+  DG V+GWG    G++  GD     +  P +
Sbjct: 989  RTTPKPVQDLADVKAV--TAGAHHVVAVRHDGTVWGWGANAFGQV--GDGTHFWRFRPVR 1044

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L   + V+ S G  HS+AL  D    S+G  ++G+LG      +G  +E P+ +  P
Sbjct: 1045 VEGLL--NAVETSAGEQHSLALLGDERALSWGSHEYGQLG---DAESGPSLE-PVGVKLP 1098

Query: 340  RN 341
             +
Sbjct: 1099 SS 1100



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 164/360 (45%), Gaps = 42/360 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +A   ++ AWG    GQ G G    R     V  L   K+  + A   + LA+ +DG   
Sbjct: 664  LAQDGTLRAWGGNAYGQFGDGGVTPRVVAGAVPGLSGIKL--LGASYLHVLAVREDGMLL 721

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            T                 ++P QV  L   + + A  G  H L V   G   AWG N  G
Sbjct: 722  TWGYNRFGQLGLGAAGWSSLPVQVRGLGQGRRLSA--GRAHSLLVRADGTVLAWGQNTSG 779

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----Q 160
            Q G+        G    R   +  R  P    R  +AG  HS+VL  +G VW+WG     
Sbjct: 780  QLGD--------GSTTHRASPVLARNLP--CARAASAGRQHSLVLACDGTVWSWGGNSQG 829

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                G +   + P +V+GL  V  +  G   ++ L+ DG +W WG N  GQLG G    R
Sbjct: 830  QLGDGGVTSRAYPAKVEGLWGVVAVLAGGDSSMVLRADGTVWTWGANGSGQLGDGTLGDR 889

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            + P+ V+GL+G+    +  G  H+  ++ DG V+ W  G +GR   GD   +S   P +V
Sbjct: 890  ASPLEVKGLAGIATGVM--GEAHALVVSQDGTVWAW--GANGRGQLGDGTTTSSASPVRV 945

Query: 281  NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV--TTGQPMEVPINIPA 338
              L+    + VS G  +S+A+  DG ++S+G  D G+LG G  V  TT +P++   ++ A
Sbjct: 946  AGLSAA--MNVSVGQAYSLAVLPDGTVWSWGANDSGQLGDGTNVARTTPKPVQDLADVKA 1003



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 159/347 (45%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
           ++ AWG G +GQLG G   +R     V  L   +V  + AG+ + LA+ DDG      +N
Sbjct: 569 TVWAWGDGFEGQLGDGAGVQRASPVQVTGLT--RVVKLAAGAAHGLAVRDDGTVWAWGDN 626

Query: 64  IPSQ------------VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
              Q            V     T +     G +H +A+   G   AWGGN YGQ G+   
Sbjct: 627 TEGQMGDGSWSDRFRAVQVYGLTGVSSVVGGLYHSMALAQDGTLRAWGGNAYGQFGD--- 683

Query: 112 RKDDTGRILRRDI--VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                G +  R +   +P     KL+     A   H + +  +G + TWG         G
Sbjct: 684 -----GGVTPRVVAGAVPGLSGIKLL----GASYLHVLAVREDGMLLTWGYNRFGQLGLG 734

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S+PV+V+GL Q + ++ G  H+L ++ DG + AWG N  GQLG G T  R+ P+ 
Sbjct: 735 AAGWSSLPVQVRGLGQGRRLSAGRAHSLLVRADGTVLAWGQNTSGQLGDGSTTHRASPVL 794

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            + L        +AG  HS  L  DG V+ WG    G+L  GD   +S+  P KV  L G
Sbjct: 795 ARNLP--CARAASAGRQHSLVLACDGTVWSWGGNSQGQL--GDGGVTSRAYPAKVEGLWG 850

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +V V  GG  S+ L  DG ++++G    G+LG G       P+EV
Sbjct: 851 --VVAVLAGGDSSMVLRADGTVWTWGANGSGQLGDGTLGDRASPLEV 895



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAG  HS  +T  G V+ WG    G+LG G +    ++V Q+V  L   D+  ++ G  
Sbjct: 53  VAAGAQHSLYVTQAGTVWAWGGNGSGQLGTG-SVSFQRVVAQQVPGL--TDVTSIAAGDA 109

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           HS+AL  D  ++++G  + G++G G  V    P +VP
Sbjct: 110 HSLALRADRTVWTWGGNNAGQVGDGTNVDRPTPQKVP 146


>gi|321470134|gb|EFX81111.1| hypothetical protein DAPPUDRAFT_50378 [Daphnia pulex]
          Length = 4502

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 61/396 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
            I  WG    GQLG     + +   V +AL   +   +  G +   AI  DG+        
Sbjct: 3616 IYGWGHNHRGQLGGVEGAKVKVPTVCEALSALRPIQLAGGEQTLFAITSDGRVYATGYGA 3675

Query: 60   ---------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     ++  +PS + +L +  + + A+  GG HCLA+  +G  Y+WG  E G+ G 
Sbjct: 3676 GGRLGIGGAESVTVPSLLESLQHVFVKKVAVNSGGKHCLALSSEGEVYSWGEGEDGKLGH 3735

Query: 109  EPERKDDTGRILR----RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
              +   D  RI+     +D+V             VA GG HS  +T  G ++TWG+    
Sbjct: 3736 GNKLPCDRPRIIESLRGKDVV------------DVACGGAHSAAITALGELYTWGKGRYG 3783

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLAL--QEDGALWAWGNNEYGQLGT 214
                GD      P  V+ L   +++ V    G     A+  +E G +W+WG+ +YG+LG 
Sbjct: 3784 RLGHGDSDDQLKPKLVEALLGYRVMDVACGSGDAQTCAITDEEGGTVWSWGDGDYGKLGR 3843

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            G +     P  ++ LSGL ++ +  G   S AL+++G VY WG+G++ RLG G ++   +
Sbjct: 3844 GGSDGCKIPTKIESLSGLGIIKVECGSQFSVALSNNGSVYTWGKGDYHRLGHGVDEHVRR 3903

Query: 275  MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
              P+KV  L G+ ++ +S G  H V  T  G ++++G  D G+LG G   TTG  ++ P 
Sbjct: 3904 --PKKVMTLQGKKVISISTGALHCVVCTDQGEVYTWGDNDEGQLGDG--TTTG--IQKPR 3957

Query: 335  NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
             + A +N    ++R      V+CG  HT+A   W T
Sbjct: 3958 LVAALQN--KKINR------VSCGSAHTVA---WST 3982



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 179/390 (45%), Gaps = 60/390 (15%)

Query: 7    IIAWGSGEDGQLG------IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            +  WG  +  QLG      I   +  +W     +L+P    SV  GS++   +   GK  
Sbjct: 2700 VYVWGLNDKEQLGGPKGSKIKVPQAVDWTV---SLQPI---SVAGGSKSLFLVTQSGKAY 2753

Query: 59   --------------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNE 102
                          ++  N P Q+ ALS   + + A+  GG H LA+   GR ++WG  +
Sbjct: 2754 ACGEGSNGRLGLGHSRNVNSPHQITALSQHVVRKVAVHSGGRHALALTADGRVFSWGEGD 2813

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
             G+ G       DT R +               VR VAAG  HS  +T  G ++TWG   
Sbjct: 2814 DGKLGHGDVTSLDTPRCIE--------ALNGFRVRDVAAGSNHSAAVTSSGELYTWGLGE 2865

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGT 214
                  GD      P RV+ L   +++ V         LAL E G +++WG+ ++G+LG 
Sbjct: 2866 YGRLGHGDNLTQLTPKRVESLVGQRVVQVSCGSRDAQTLALVEGGLVYSWGDGDFGKLGR 2925

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            G ++  S P  V  LSGL +  +  G   S ALT +G VY WG+G++ RLG G +D+  +
Sbjct: 2926 GGSEGCSSPCLVDKLSGLGVCHVECGAQFSVALTCNGHVYTWGKGDYFRLGHG-SDQHVR 2984

Query: 275  MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
              P  V  L G+ ++ VS G  H +A+T  G +F++G  DHG+ G G      +P  V  
Sbjct: 2985 W-PTLVEGLRGKKVIGVSVGALHCLAVTDAGQVFAWGDNDHGQQGNGSITVNRRPTLV-- 3041

Query: 335  NIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                      G+D   I + VACG  H++A
Sbjct: 3042 ---------QGIDGIKITR-VACGSSHSVA 3061



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 24/246 (9%)

Query: 88   AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA-AGGTHS 146
            +V    R Y WG N+  Q G     K          I +PQ     + ++ ++ AGG+ S
Sbjct: 2693 SVSGAKRVYVWGLNDKEQLGGPKGSK----------IKVPQAVDWTVSLQPISVAGGSKS 2742

Query: 147  VVL-TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQE 197
            + L T+ G  +  G+        G  + ++ P ++  L Q  V+ +AV  G  H LAL  
Sbjct: 2743 LFLVTQSGKAYACGEGSNGRLGLGHSRNVNSPHQITALSQHVVRKVAVHSGGRHALALTA 2802

Query: 198  DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            DG +++WG  + G+LG GD      P  ++ L+G  + D+AAG  HS A+T  GE+Y WG
Sbjct: 2803 DGRVFSWGEGDDGKLGHGDVTSLDTPRCIEALNGFRVRDVAAGSNHSAAVTSSGELYTWG 2862

Query: 258  RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDH 315
             GE+GRLG GDN   +++ P++V  L G+ +VQVSCG     ++AL   G ++S+G GD 
Sbjct: 2863 LGEYGRLGHGDN--LTQLTPKRVESLVGQRVVQVSCGSRDAQTLALVEGGLVYSWGDGDF 2920

Query: 316  GRLGYG 321
            G+LG G
Sbjct: 2921 GKLGRG 2926



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 26/243 (10%)

Query: 93   GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLT 150
            G+ Y WG N  GQ G     K          + +P  C     +R  Q+A G      +T
Sbjct: 3614 GQIYGWGHNHRGQLGGVEGAK----------VKVPTVCEALSALRPIQLAGGEQTLFAIT 3663

Query: 151  REGHVWTWGQPWPPGDI----KQISVPVRVQGLEQV--KLIAV--GAFHNLALQEDGALW 202
             +G V+  G            + ++VP  ++ L+ V  K +AV  G  H LAL  +G ++
Sbjct: 3664 SDGRVYATGYGAGGRLGIGGAESVTVPSLLESLQHVFVKKVAVNSGGKHCLALSSEGEVY 3723

Query: 203  AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
            +WG  E G+LG G+  P  +P  ++ L G  +VD+A GG HS A+T  GE+Y WG+G +G
Sbjct: 3724 SWGEGEDGKLGHGNKLPCDRPRIIESLRGKDVVDVACGGAHSAAITALGELYTWGKGRYG 3783

Query: 263  RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRD--GHIFSFGRGDHGRL 318
            RLG GD+D   K  P+ V  L G  ++ V+CG     + A+T +  G ++S+G GD+G+L
Sbjct: 3784 RLGHGDSDDQLK--PKLVEALLGYRVMDVACGSGDAQTCAITDEEGGTVWSWGDGDYGKL 3841

Query: 319  GYG 321
            G G
Sbjct: 3842 GRG 3844



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 44/324 (13%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT------- 59
            A G G +G+LG+G++        + AL  + VR V   +G R++LA+  DG+        
Sbjct: 2754 ACGEGSNGRLGLGHSRNVNSPHQITALSQHVVRKVAVHSGGRHALALTADGRVFSWGEGD 2813

Query: 60   ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                      + + P  + AL+  ++   A G  H  AV   G  Y WG  EYG+ G   
Sbjct: 2814 DGKLGHGDVTSLDTPRCIEALNGFRVRDVAAGSNHSAAVTSSGELYTWGLGEYGRLGHGD 2873

Query: 111  ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPGDIK 168
                 T +  R + ++ QR      V QV+ G     ++ L   G V++WG     GD  
Sbjct: 2874 NLTQLTPK--RVESLVGQR------VVQVSCGSRDAQTLALVEGGLVYSWGD----GDFG 2921

Query: 169  QI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
            ++        S P  V  L  + +  V  GA  ++AL  +G ++ WG  +Y +LG G  Q
Sbjct: 2922 KLGRGGSEGCSSPCLVDKLSGLGVCHVECGAQFSVALTCNGHVYTWGKGDYFRLGHGSDQ 2981

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  V+GL G  ++ ++ G  H  A+TD G+V+ WG  +HG+ G G    + +  P 
Sbjct: 2982 HVRWPTLVEGLRGKKVIGVSVGALHCLAVTDAGQVFAWGDNDHGQQGNGSITVNRR--PT 3039

Query: 279  KVNLLAGEDIVQVSCGGTHSVALT 302
             V  + G  I +V+CG +HSVA T
Sbjct: 3040 LVQGIDGIKITRVACGSSHSVAWT 3063



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 131/266 (49%), Gaps = 32/266 (12%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
            + +WG G+DG+LG G+    +    ++AL  ++VR V AGS +S A+   G+  T     
Sbjct: 2806 VFSWGEGDDGKLGHGDVTSLDTPRCIEALNGFRVRDVAAGSNHSAAVTSSGELYTWGLGE 2865

Query: 62   -------ENI----PSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +N+    P +V +L   ++VQ + G      LA+ + G  Y+WG  ++G+ G 
Sbjct: 2866 YGRLGHGDNLTQLTPKRVESLVGQRVVQVSCGSRDAQTLALVEGGLVYSWGDGDFGKLGR 2925

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                   +  ++ +           L V  V  G   SV LT  GHV+TWG+        
Sbjct: 2926 GGSEGCSSPCLVDK--------LSGLGVCHVECGAQFSVALTCNGHVYTWGKGDYFRLGH 2977

Query: 165  GDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            G  + +  P  V+GL   K+I  +VGA H LA+ + G ++AWG+N++GQ G G      +
Sbjct: 2978 GSDQHVRWPTLVEGLRGKKVIGVSVGALHCLAVTDAGQVFAWGDNDHGQQGNGSITVNRR 3037

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALT 248
            P  VQG+ G+ +  +A G  HS A T
Sbjct: 3038 PTLVQGIDGIKITRVACGSSHSVAWT 3063



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 150/353 (42%), Gaps = 69/353 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG GEDG+LG GN                               CD     
Sbjct: 3716 LSSEGEVYSWGEGEDGKLGHGNKLP----------------------------CDR---- 3743

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                P  + +L    +V  A GG H  A+   G  Y WG   YG+ G       D+   L
Sbjct: 3744 ----PRIIESLRGKDVVDVACGGAHSAAITALGELYTWGKGRYGRLGH-----GDSDDQL 3794

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE--GHVWTWGQPWPPGDIKQI-------- 170
            +  +V       +++     +G   +  +T E  G VW+WG     GD  ++        
Sbjct: 3795 KPKLV-EALLGYRVMDVACGSGDAQTCAITDEEGGTVWSWGD----GDYGKLGRGGSDGC 3849

Query: 171  SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             +P +++ L  + +I V  G+  ++AL  +G+++ WG  +Y +LG G  +   +P  V  
Sbjct: 3850 KIPTKIESLSGLGIIKVECGSQFSVALSNNGSVYTWGKGDYHRLGHGVDEHVRRPKKVMT 3909

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L G  ++ I+ G  H    TD GEVY WG  + G+LG G      K  P+ V  L  + I
Sbjct: 3910 LQGKKVISISTGALHCVVCTDQGEVYTWGDNDEGQLGDGTTTGIQK--PRLVAALQNKKI 3967

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI--NIPAP 339
             +VSCG  H+VA       +S  +G    +    ++ T  P++  +  +IP P
Sbjct: 3968 NRVSCGSAHTVA-------WSTCKGCSTPVAGSSRLPTSIPLQYDLLKDIPIP 4013



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           ++QV   A+G    L L  DG ++    N        D +P  + +       +  +   
Sbjct: 267 IDQVVCTALGL---LILSGDGKVYTISYN--------DQEPTLRNLNCFSAFPVAEIGFM 315

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG      LT  G+VY W   E       D+D +  MV     +++ +DIV++SCG  + 
Sbjct: 316 AGNCVCAVLTHSGQVYLWPWME-------DSDDNPTMV-----IISDQDIVRISCGDEYG 363

Query: 299 VALTRDGHIF 308
           VAL+++G I+
Sbjct: 364 VALSKNGEIY 373


>gi|195060098|ref|XP_001995753.1| GH17927 [Drosophila grimshawi]
 gi|193896539|gb|EDV95405.1| GH17927 [Drosophila grimshawi]
          Length = 4933

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 176/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4070 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4129

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + + +IP+ + +L +  + + A+  GG HCLA+   G  YAWG  E G+ 
Sbjct: 4130 GSGGRLGVGGSDSWSIPTLLGSLQHVFVKKVAVNSGGKHCLALTTDGEVYAWGEGEDGKL 4189

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  ++L             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4190 GHGNRLSYDRPKLLEH--------LNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4241

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4242 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4301

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4302 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4359

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4360 KVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 4414

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4415 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4441



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 179/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 2913 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFVVSQDGKVFACGEG 2972

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 2973 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3032

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R +A G +HS  ++ +G ++TWG        
Sbjct: 3033 HGNRTTLDKPRL------VEALRAKK--IRDIACGSSHSAAISSQGELYTWGLGEYGRLG 3084

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   ++I V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3085 HGDNATQLKPKLVTALCGSRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3144

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             + P  ++ LSG+ +V I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3145 SATPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3202

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3203 IAGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3255

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3256 ----IGLDAVFVNR-VACGSSHSMA 3275



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 25/237 (10%)

Query: 141  AGGTHSV-VLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFH 191
            AGG+ S+ V++++G V+  G+        G    + +P ++  L Q  VK +AV  G  H
Sbjct: 2951 AGGSKSLFVVSQDGKVFACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKH 3010

Query: 192  NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
             LAL  DG +++WG  E G+LG G+     +P  V+ L    + DIA G  HS A++  G
Sbjct: 3011 ALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEALRAKKIRDIACGSSHSAAISSQG 3070

Query: 252  EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFS 309
            E+Y WG GE+GRLG GDN  ++++ P+ V  L G  ++QV+CG     ++ALT DG +FS
Sbjct: 3071 ELYTWGLGEYGRLGHGDN--ATQLKPKLVTALCGSRVIQVACGSRDAQTLALTEDGAVFS 3128

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +G GD G+LG G    +  P E+       R +G GV +      + CG + +LA+ 
Sbjct: 3129 WGDGDFGKLGRGGSEGSATPHEI------ERLSGIGVVQ------IECGAQFSLALT 3173



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 38/290 (13%)

Query: 83  GWHCLAVDDQGRAYAWGGNE-----YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           G H LAVD+   AY+WG  +     +G C    E       ++RR             V+
Sbjct: 650 GRHFLAVDNNFNAYSWGTGDNRRLGHGDCHSR-ELPTKIESLVRR-------------VK 695

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLE--QVKLIAV 187
            V  G ++S  +T  G+++TWG+    G+  ++         +P  V  L+  QV  +A+
Sbjct: 696 SVYCGCSYSAAITLRGNLYTWGR----GNYGRLGHGISDDQCLPTMVMALKDHQVVDVAL 751

Query: 188 GA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           G+   H L L  +G ++AWG+ +YG+LG        QP+ ++ L  +    + AG   S 
Sbjct: 752 GSGDAHTLCLTNEGLVYAWGDGDYGKLGNASCNSSLQPLLIECLPRVQ--RVFAGSQFSL 809

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALT +G++Y WG+         + +     VP+ +  L  + IV V+ G TH +AL+  G
Sbjct: 810 ALTGEGQLYSWGKASCLGHQLVERNVQGCSVPRLITSLQHKRIVDVAVGVTHCLALSSAG 869

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            IF +GR D+ ++     V +   +  PI +  P     G+    +  L+
Sbjct: 870 EIFGWGRNDNQQICPA-SVCSEPLLRQPILVTLPTLPASGMACTAVQSLI 918



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 32/223 (14%)

Query: 128 QRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWG--------QPWPPGDIKQ---IS 171
           QR  P L+     V+QVA      ++L++EG ++ W         QP   GDI     IS
Sbjct: 584 QRPPPALLNCKFHVKQVACSKDIVLLLSKEGKLYNWHISKPDTEPQPLDFGDIGSETFIS 643

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +    +G            H LA+  +   ++WG  +  +LG GD   R  P  ++ L  
Sbjct: 644 IASHCEG-----------RHFLAVDNNFNAYSWGTGDNRRLGHGDCHSRELPTKIESLVR 692

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             +  +  G  +S A+T  G +Y WGRG +GRLG G +D   + +P  V  L    +V V
Sbjct: 693 -RVKSVYCGCSYSAAITLRGNLYTWGRGNYGRLGHGISD--DQCLPTMVMALKDHQVVDV 749

Query: 292 SCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + G    H++ LT +G ++++G GD+G+LG     ++ QP+ +
Sbjct: 750 ALGSGDAHTLCLTNEGLVYAWGDGDYGKLGNASCNSSLQPLLI 792



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 125/265 (47%), Gaps = 40/265 (15%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
           +WG+G++ +LG G+   RE    +++L   +V+SV  G   S AI   G   T       
Sbjct: 664 SWGTGDNRRLGHGDCHSRELPTKIESLV-RRVKSVYCGCSYSAAITLRGNLYTWGRGNYG 722

Query: 62  ---------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                    + +P+ V AL + ++V  A+G    H L + ++G  YAWG  +YG+ G   
Sbjct: 723 RLGHGISDDQCLPTMVMALKDHQVVDVALGSGDAHTLCLTNEGLVYAWGDGDYGKLGNAS 782

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG----- 165
                   ++         C P+  V++V AG   S+ LT EG +++WG+    G     
Sbjct: 783 CNSSLQPLLI--------ECLPR--VQRVFAGSQFSLALTGEGQLYSWGKASCLGHQLVE 832

Query: 166 -DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            +++  SVP  +  L+  ++  +AVG  H LAL   G ++ WG N+  Q+        S+
Sbjct: 833 RNVQGCSVPRLITSLQHKRIVDVAVGVTHCLALSSAGEIFGWGRNDNQQICPASVC--SE 890

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTAL 247
           P+  Q +  +TL  + A G   TA+
Sbjct: 891 PLLRQPIL-VTLPTLPASGMACTAV 914



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 39/227 (17%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   +  +P+++ +L   ++     G  +  A+  +G  Y WG   YG+ G      DD 
Sbjct: 676 GDCHSRELPTKIESLVR-RVKSVYCGCSYSAAITLRGNLYTWGRGNYGRLGHGI--SDD- 731

Query: 117 GRILRRDIVIPQRCAPKLIV----RQVA-----AGGTHSVVLTREGHVWTWGQPWPPGDI 167
                       +C P +++     QV      +G  H++ LT EG V+ WG     GD 
Sbjct: 732 ------------QCLPTMVMALKDHQVVDVALGSGDAHTLCLTNEGLVYAWGD----GDY 775

Query: 168 KQIS--------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY--GQLGTGDT 217
            ++          P+ ++ L +V+ +  G+  +LAL  +G L++WG       QL   + 
Sbjct: 776 GKLGNASCNSSLQPLLIECLPRVQRVFAGSQFSLALTGEGQLYSWGKASCLGHQLVERNV 835

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           Q  S P  +  L    +VD+A G  H  AL+  GE++GWGR ++ ++
Sbjct: 836 QGCSVPRLITSLQHKRIVDVAVGVTHCLALSSAGEIFGWGRNDNQQI 882



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 99/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3066 ISSQGELYTWGLGEYGRLGHGDNATQLKPKLVTALCGSRVIQVACGSRDAQTLALTEDGA 3125

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                   P ++  LS   +VQ   G    LA+   G  + WG  +
Sbjct: 3126 VFSWGDGDFGKLGRGGSEGSATPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGD 3185

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ WG
Sbjct: 3186 YYRLGHGGDQHVRKPQPIAGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAWG 3234

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                          +N++GQ G+G+T  
Sbjct: 3235 ----------------------------------------------DNDHGQQGSGNTFV 3248

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3249 NKKPALVIGLDAVFVNRVACGSSHSMA 3275



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 20/117 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + AWG G+ G+LG  +        +++ L   +V+ V AGS+ SLA+  +G+  +     
Sbjct: 767 VYAWGDGDYGKLGNASCNSSLQPLLIECLP--RVQRVFAGSQFSLALTGEGQLYSWGKAS 824

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         ++P  + +L + +IV  A+G  HCLA+   G  + WG N+  Q
Sbjct: 825 CLGHQLVERNVQGCSVPRLITSLQHKRIVDVAVGVTHCLALSSAGEIFGWGRNDNQQ 881


>gi|281361147|ref|NP_608388.2| HERC2 [Drosophila melanogaster]
 gi|91206848|sp|Q9VR91.3|HERC2_DROME RecName: Full=Probable E3 ubiquitin-protein ligase HERC2; AltName:
            Full=HECT domain and RCC1-like domain-containing protein
            2
 gi|272506184|gb|AAF50913.3| HERC2 [Drosophila melanogaster]
          Length = 4912

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 176/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4049 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4108

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 4109 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 4168

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4169 GHGNRMSYDRPKLVEH--------LNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4220

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4221 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4280

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL +V +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4281 GCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4338

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4339 KVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 4393

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4394 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4420



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 178/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 2987 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEG 3046

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3047 TNGRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3106

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R VA G +HS  ++ +G ++TWG        
Sbjct: 3107 HGNRTTLDKPRL------VEALRAKK--IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 3158

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   +++ V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3159 HGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3218

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ +V I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3219 SDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3276

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3277 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3329

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3330 ----IGLDAVFVNR-VACGSSHSIA 3349



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 162/319 (50%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  A G      V   G+ YA G    G+ G            +  
Sbjct: 3008 KVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEGTNGRLGLG----------VTH 3057

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 3058 NVPLPHQLPVLRQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 3117

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             V+ L  ++++ +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 3118 LVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGR 3177

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             +V +A G     + ALT+DG V+ WG G+ G+LG G ++ S    P ++  L+G  +VQ
Sbjct: 3178 RVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSD--TPHEIERLSGIGVVQ 3235

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+            G    R
Sbjct: 3236 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI------------GGLRGR 3283

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R I   VA G  H LA+ +
Sbjct: 3284 RVIH--VAVGALHCLAVTD 3300



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 33/328 (10%)

Query: 38  YKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAA--IGGWHCLAV 89
           ++++ V       L +  +GK       K E  P  +  +++   +  A    G H LA+
Sbjct: 572 FQIKQVACCETQMLILSQEGKLYTWRLAKPEAEPLPMEEVAHDVFISIAGHCEGRHFLAI 631

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV-IPQRCAPKLIVRQVAAGGTHSVV 148
           D    AY+WG  E  + G      D   R +   I  + Q C     V+ V  G ++S  
Sbjct: 632 DSNHNAYSWGTGEDHRLGH----GDTHARAVPTKIAALEQHC-----VQSVYCGCSYSAA 682

Query: 149 LTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGA 200
           +T  G++ TWG+        G+    S+P  V  L    ++ V    G  H+LAL  +G 
Sbjct: 683 ITCGGNLLTWGRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGL 742

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++AWG+ +YG+LG G+     QPI V+ L  +    + AG   S AL+ +G++Y WG+  
Sbjct: 743 VFAWGDGDYGKLGNGNCNGSLQPILVESLPRVQ--RVFAGSQFSVALSSEGQLYTWGKAT 800

Query: 261 HGRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              LG    ++S +   VP+ V+ L  + IV V+    H +AL+  G +F +GR D  ++
Sbjct: 801 C--LGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQI 858

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGV 346
                V++   +  PI +  P     G+
Sbjct: 859 CPA-SVSSEPLLRTPILVSLPTFPASGI 885



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 14/206 (6%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF-- 190
           +  ++QVA   T  ++L++EG ++TW    P  +      P+ ++ +     I++     
Sbjct: 571 RFQIKQVACCETQMLILSQEGKLYTWRLAKPEAE------PLPMEEVAHDVFISIAGHCE 624

Query: 191 --HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+  +   ++WG  E  +LG GDT  R+ P  +  L    +  +  G  +S A+T
Sbjct: 625 GRHFLAIDSNHNAYSWGTGEDHRLGHGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAIT 684

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGH 306
             G +  WGRG + RLG G++D  S  +P  V  L+   +V V+ G    HS+ALT +G 
Sbjct: 685 CGGNLLTWGRGTYARLGHGNSDDRS--LPTLVVALSDHMVVDVALGSGDAHSLALTSEGL 742

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +F++G GD+G+LG G    + QP+ V
Sbjct: 743 VFAWGDGDYGKLGNGNCNGSLQPILV 768



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 36/236 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S  +  +WG+GED +LG G+   R     + ALE + V+SV  G   S AI   G   T 
Sbjct: 633 SNHNAYSWGTGEDHRLGHGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAITCGGNLLTW 692

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
                           ++P+ V ALS+  +V  A+G    H LA+  +G  +AWG  +YG
Sbjct: 693 GRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGLVFAWGDGDYG 752

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           + G      +  G +  + I++     P+  V++V AG   SV L+ EG ++TWG+    
Sbjct: 753 KLGN----GNCNGSL--QPILV--ESLPR--VQRVFAGSQFSVALSSEGQLYTWGKATCL 802

Query: 165 G------DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G       ++  SVP  V  L+  ++  +AV   H LAL   G ++ WG N+  Q+
Sbjct: 803 GHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQI 858



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 101/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3140 ISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGA 3199

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  + P ++  LS   +VQ   G    LA+   G  + WG  +
Sbjct: 3200 VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGD 3259

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 3260 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAW- 3307

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 3308 ---------------------------------------------GDNDHGQQGSGNTFV 3322

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3323 NKKPALVIGLDAVFVNRVACGSSHSIA 3349



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG G+ G+LG GN        +V++L   +V+ V AGS+ S+A+  +G+  
Sbjct: 737 LTSEGLVFAWGDGDYGKLGNGNCNGSLQPILVESLP--RVQRVFAGSQFSVALSSEGQLY 794

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           T                   ++P  V++L + +IV  A+   HCLA+   G  + WG N+
Sbjct: 795 TWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRND 854

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
             Q        +    +LR  I++     P      +A     S+V T+  H
Sbjct: 855 SQQICPASVSSEP---LLRTPILV---SLPTFPASGIACTSAQSLVWTQSSH 900


>gi|407003324|gb|EKE19915.1| hypothetical protein ACD_8C00086G0006 [uncultured bacterium]
          Length = 2770

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 111/352 (31%), Positives = 166/352 (47%), Gaps = 40/352 (11%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           WG   DGQLG  NN   + +  V+      V ++ AG+ +S+A+  DG            
Sbjct: 494 WGGNSDGQLG--NNSTAQSLVPVQVPGLSGVSAISAGNYHSMALKSDGTVWAWGRNSSGQ 551

Query: 58  ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE---- 109
                T    +P QV  L+ T  V A  G +H +A+   G  + WG NEY +        
Sbjct: 552 LGNNSTTVSLVPIQV--LTGTTSVSA--GTYHSMALKSDGAVWGWGNNEYKKIISNTNLD 607

Query: 110 ---PERKDDTGRILR-RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP-- 163
              P +      I    D  +P     K I         +S+ L  +  VW WG      
Sbjct: 608 QLVPVKTAMNAYISDFNDGFVPSSQEIKSIATSSGGSYGYSLALKSDKTVWAWGYGGSGV 667

Query: 164 --PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G  +Q+ V   V+ L  V+ I+ G  H+LAL+ DG  WAWG+N YG LG   T   S
Sbjct: 668 LGNGTGEQMLVGYPVRDLTGVEQISAGEGHSLALRSDGTAWAWGDNAYGMLGNNSTVTSS 727

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ V GL+G++   + AG  HS AL  DG V+ WG    G+L  GD   + ++VP +V+
Sbjct: 728 IPVQVSGLTGVS--SVKAGRLHSMALKSDGTVWAWGYNTEGQL--GDGSTTQRLVPVQVS 783

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            L  ED++ +S G  HS+ +  DG ++++GR  +G+LG      +  P++VP
Sbjct: 784 GL--EDVIAISAGDYHSMVIKSDGTVWAWGRNSNGQLGNNSTTGSLVPVQVP 833



 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 113/340 (33%), Positives = 165/340 (48%), Gaps = 40/340 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S  ++ AWG G  G LG G  E+      V+ L    V  + AG  +SLA+  DG   
Sbjct: 651 LKSDKTVWAWGYGGSGVLGNGTGEQMLVGYPVRDLT--GVEQISAGEGHSLALRSDGTAW 708

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T T +IP QV+ L+    V+A  G  H +A+   G  +AWG N  G
Sbjct: 709 AWGDNAYGMLGNNSTVTSSIPVQVSGLTGVSSVKA--GRLHSMALKSDGTVWAWGYNTEG 766

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G+        G   +R  ++P + +    V  ++AG  HS+V+  +G VW WG+    
Sbjct: 767 QLGD--------GSTTQR--LVPVQVSGLEDVIAISAGDYHSMVIKSDGTVWAWGRN-SN 815

Query: 165 GDIKQIS-----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           G +   S     VPV+V GL  V LI+ G   + A++ DG   AWG+N YGQL  G    
Sbjct: 816 GQLGNNSTTGSLVPVQVPGLTGVALISAGTNTSAAVKSDGTALAWGSNTYGQLCDGSNIQ 875

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R  P+ V    G+  + +     HS  L  DG V+G GR ++G +G  +N  +   VP +
Sbjct: 876 RLIPVQVSEPVGVGALSMVVANSHSLILKLDGTVWGCGRNDYGPIG--NNSITDSKVPVQ 933

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
              LAG  +V +S G  HS+AL  DG I+ +G   +G+LG
Sbjct: 934 TLGLAG--VVSISAGLYHSMALKSDGTIWGWGYNGYGQLG 971



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 92/265 (34%), Positives = 133/265 (50%), Gaps = 22/265 (8%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           K  Q   G +H LA+   G  +AWG N YG+ G+        G  + R  ++P + +   
Sbjct: 269 KYAQVVAGYYHNLALKSDGTVWAWGYNYYGRLGD--------GSTINR--IVPVQVSGLT 318

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAF 190
            V  ++A   HS+ L  +G +WTWG           I Q  VPV+V  L  V  I+ G  
Sbjct: 319 EVSAISAAFGHSMALKSDGTLWTWGYNNRGQLGNNSITQSLVPVQV--LTGVASISAGYD 376

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG--WHSTALT 248
           ++LA++ DG +WAWG N YGQ G   T     PI V GL+G+T +   +     HS AL 
Sbjct: 377 YSLAVKSDGTVWAWGRNYYGQFGNNSTIDSLVPIQVSGLTGVTSISATSSNNYSHSLALK 436

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DG V+GWG    G+L  G+N  +  +VP +   L G  +V +S G  HS+AL  DG  +
Sbjct: 437 SDGTVWGWGYNSTGQL--GNNSATQSLVPVQALGLTG--VVSISAGSNHSMALKSDGTAW 492

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVP 333
            +G    G+LG      +  P++VP
Sbjct: 493 IWGGNSDGQLGNNSTAQSLVPVQVP 517



 Score =  135 bits (340), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 42/356 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG    G+LG G+   R     V  L   +V ++ A   +S+A+  DG   
Sbjct: 283 LKSDGTVWAWGYNYYGRLGDGSTINRIVPVQVSGLT--EVSAISAAFGHSMALKSDGTLW 340

Query: 61  TENIPSQVNALSNTKIVQAAI-------------GGWHCLAVDDQGRAYAWGGNEYGQCG 107
           T    ++   L N  I Q+ +             G  + LAV   G  +AWG N YGQ G
Sbjct: 341 TWGYNNR-GQLGNNSITQSLVPVQVLTGVASISAGYDYSLAVKSDGTVWAWGRNYYGQFG 399

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT----HSVVLTREGHVWTWGQ--- 160
                          D ++P + +    V  ++A  +    HS+ L  +G VW WG    
Sbjct: 400 NNSTI----------DSLVPIQVSGLTGVTSISATSSNNYSHSLALKSDGTVWGWGYNST 449

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                    Q  VPV+  GL  V  I+ G+ H++AL+ DG  W WG N  GQLG   T  
Sbjct: 450 GQLGNNSATQSLVPVQALGLTGVVSISAGSNHSMALKSDGTAWIWGGNSDGQLGNNSTAQ 509

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ V GLSG++   I+AG +HS AL  DG V+ WGR   G+L  G+N  +  +VP  
Sbjct: 510 SLVPVQVPGLSGVSA--ISAGNYHSMALKSDGTVWAWGRNSSGQL--GNNSTTVSLVP-- 563

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           + +L G     VS G  HS+AL  DG ++ +G  ++ ++     +    P++  +N
Sbjct: 564 IQVLTG--TTSVSAGTYHSMALKSDGAVWGWGNNEYKKIISNTNLDQLVPVKTAMN 617



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 165/376 (43%), Gaps = 58/376 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG    GQLG  NN     +  ++ L      SV AG+ +S+A+  DG   
Sbjct: 535 LKSDGTVWAWGRNSSGQLG--NNSTTVSLVPIQVLT--GTTSVSAGTYHSMALKSDGAVW 590

Query: 61  TENIPSQVNALSNTKI-----VQAAIGGW---------------------------HCLA 88
                     +SNT +     V+ A+  +                           + LA
Sbjct: 591 GWGNNEYKKIISNTNLDQLVPVKTAMNAYISDFNDGFVPSSQEIKSIATSSGGSYGYSLA 650

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           +      +AWG    G  G     +   G  +R D+           V Q++AG  HS+ 
Sbjct: 651 LKSDKTVWAWGYGGSGVLGNGTGEQMLVGYPVR-DLTG---------VEQISAGEGHSLA 700

Query: 149 LTREGHVWTWGQP----WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAW 204
           L  +G  W WG               S+PV+V GL  V  +  G  H++AL+ DG +WAW
Sbjct: 701 LRSDGTAWAWGDNAYGMLGNNSTVTSSIPVQVSGLTGVSSVKAGRLHSMALKSDGTVWAW 760

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           G N  GQLG G T  R  P+ V GL    ++ I+AG +HS  +  DG V+ WGR  +G+L
Sbjct: 761 GYNTEGQLGDGSTTQRLVPVQVSGLE--DVIAISAGDYHSMVIKSDGTVWAWGRNSNGQL 818

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           G  +N  +  +VP +V  L G  +  +S G   S A+  DG   ++G   +G+L  G  +
Sbjct: 819 G--NNSTTGSLVPVQVPGLTG--VALISAGTNTSAAVKSDGTALAWGSNTYGQLCDGSNI 874

Query: 325 TTGQPMEV--PINIPA 338
               P++V  P+ + A
Sbjct: 875 QRLIPVQVSEPVGVGA 890



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 8/158 (5%)

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +++  E+   +  G +HNLAL+ DG +WAWG N YG+LG G T  R  P+ V GL+ ++ 
Sbjct: 263 KIEIQEKYAQVVAGYYHNLALKSDGTVWAWGYNYYGRLGDGSTINRIVPVQVSGLTEVSA 322

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           +  A G  HS AL  DG ++ WG    G+L  G+N  +  +VP  V +L G  +  +S G
Sbjct: 323 ISAAFG--HSMALKSDGTLWTWGYNNRGQL--GNNSITQSLVP--VQVLTG--VASISAG 374

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +S+A+  DG ++++GR  +G+ G    + +  P++V
Sbjct: 375 YDYSLAVKSDGTVWAWGRNYYGQFGNNSTIDSLVPIQV 412



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 113/246 (45%), Gaps = 36/246 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S  ++ AWG   +GQLG G+  +R     V  LE   V ++ AG  +S+ I  DG   
Sbjct: 751 LKSDGTVWAWGYNTEGQLGDGSTTQRLVPVQVSGLE--DVIAISAGDYHSMVIKSDGTVW 808

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T    +P QV  L+   ++ A  G     AV   G A AWG N YG
Sbjct: 809 AWGRNSNGQLGNNSTTGSLVPVQVPGLTGVALISA--GTNTSAAVKSDGTALAWGSNTYG 866

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ-- 160
           Q  +        G  ++R  +IP + +  + V  ++     +HS++L  +G VW  G+  
Sbjct: 867 QLCD--------GSNIQR--LIPVQVSEPVGVGALSMVVANSHSLILKLDGTVWGCGRND 916

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
             P     I    VPV+  GL  V  I+ G +H++AL+ DG +W WG N YGQLG   T 
Sbjct: 917 YGPIGNNSITDSKVPVQTLGLAGVVSISAGLYHSMALKSDGTIWGWGYNGYGQLGDNSTT 976

Query: 219 PRSQPI 224
            R  P+
Sbjct: 977 SRLAPV 982


>gi|194893471|ref|XP_001977881.1| GG19286 [Drosophila erecta]
 gi|190649530|gb|EDV46808.1| GG19286 [Drosophila erecta]
          Length = 4908

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 176/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4045 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4104

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 4105 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 4164

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4165 GHGNRMSYDRPKLVEH--------LNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4216

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4217 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4276

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL +V +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4277 GCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4334

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4335 KVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 4389

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4390 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4416



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 178/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 2984 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEG 3043

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3044 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3103

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R VA G +HS  ++ +G ++TWG        
Sbjct: 3104 HGNRTTLDKPRL------VEALRAKK--IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 3155

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   +++ V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3156 HGDNVTQLKPKLVVALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3215

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ +V I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3216 SDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3273

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3274 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3326

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3327 ----IGLDAVFVNR-VACGSSHSIA 3346



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 162/319 (50%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  A G      V   G+ YA G    G+ G            +  
Sbjct: 3005 KVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEGTNGRLGLG----------VTH 3054

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 3055 NVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 3114

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             V+ L  ++++ +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 3115 LVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNVTQLKPKLVVALAGR 3174

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             +V +A G     + ALT+DG V+ WG G+ G+LG G ++ S    P ++  L+G  +VQ
Sbjct: 3175 RVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSD--TPHEIERLSGIGVVQ 3232

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+            G    R
Sbjct: 3233 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI------------GGLRGR 3280

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R I   VA G  H LA+ +
Sbjct: 3281 RVIH--VAVGALHCLAVTD 3297



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 33/328 (10%)

Query: 38  YKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAA--IGGWHCLAV 89
           ++++ V       L +  +GK       K E  P  +  +++   +  A    G H LA+
Sbjct: 569 FQIKQVACCETQMLILSQEGKLYTWRLAKPEAEPLPMEEVAHEVFISIAGHCEGRHFLAI 628

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV-IPQRCAPKLIVRQVAAGGTHSVV 148
           D    AY+WG  E  + G      D   R +   I  + Q C     V+ V  G ++S  
Sbjct: 629 DSNHNAYSWGTGEDHRLGH----GDTHARAVPTKIAALEQHC-----VQSVYCGCSYSAA 679

Query: 149 LTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGA 200
           +T  G++ TWG+        G+    S+P  V  L    ++ V    G  H+LAL  +G 
Sbjct: 680 ITCGGNLLTWGRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGL 739

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++AWG+ +YG+LG G+     QPI V+ L  +    + AG   S AL+ +G++Y WG+  
Sbjct: 740 VFAWGDGDYGKLGNGNCNGSLQPILVESLPRVQ--RVFAGSQFSLALSSEGQLYSWGKAT 797

Query: 261 HGRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              LG    ++S +   VP+ V+ L  + IV V+    H +AL+  G +F +GR D  ++
Sbjct: 798 C--LGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQI 855

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGV 346
                V++   +  PI +  P     G+
Sbjct: 856 CPA-SVSSEPLLRTPILVSLPTFPASGI 882



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 14/206 (6%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF-- 190
           +  ++QVA   T  ++L++EG ++TW    P  +      P+ ++ +     I++     
Sbjct: 568 RFQIKQVACCETQMLILSQEGKLYTWRLAKPEAE------PLPMEEVAHEVFISIAGHCE 621

Query: 191 --HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+  +   ++WG  E  +LG GDT  R+ P  +  L    +  +  G  +S A+T
Sbjct: 622 GRHFLAIDSNHNAYSWGTGEDHRLGHGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAIT 681

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGH 306
             G +  WGRG + RLG G++D  S  +P  V  L+   +V V+ G    HS+ALT +G 
Sbjct: 682 CGGNLLTWGRGTYARLGHGNSDDRS--LPTLVVALSDHMVVDVALGSGDAHSLALTSEGL 739

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +F++G GD+G+LG G    + QP+ V
Sbjct: 740 VFAWGDGDYGKLGNGNCNGSLQPILV 765



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 36/236 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S  +  +WG+GED +LG G+   R     + ALE + V+SV  G   S AI   G   T 
Sbjct: 630 SNHNAYSWGTGEDHRLGHGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAITCGGNLLTW 689

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
                           ++P+ V ALS+  +V  A+G    H LA+  +G  +AWG  +YG
Sbjct: 690 GRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGLVFAWGDGDYG 749

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           + G      +  G +  + I++     P+  V++V AG   S+ L+ EG +++WG+    
Sbjct: 750 KLGN----GNCNGSL--QPILV--ESLPR--VQRVFAGSQFSLALSSEGQLYSWGKATCL 799

Query: 165 G------DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G       ++  SVP  V  L+  ++  +AV   H LAL   G ++ WG N+  Q+
Sbjct: 800 GHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQI 855



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 101/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3137 ISSQGELYTWGLGEYGRLGHGDNVTQLKPKLVVALAGRRVVQVACGSRDAQTLALTEDGA 3196

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  + P ++  LS   +VQ   G    LA+   G  + WG  +
Sbjct: 3197 VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGD 3256

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 3257 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAW- 3304

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 3305 ---------------------------------------------GDNDHGQQGSGNTFV 3319

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3320 NKKPALVIGLDAVFVNRVACGSSHSIA 3346



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG G+ G+LG GN        +V++L   +V+ V AGS+ SLA+  +G+  
Sbjct: 734 LTSEGLVFAWGDGDYGKLGNGNCNGSLQPILVESLP--RVQRVFAGSQFSLALSSEGQLY 791

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           +                   ++P  V++L + +IV  A+   HCLA+   G  + WG N+
Sbjct: 792 SWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRND 851

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
             Q        +    +LR  I++     P      +A     S+V T+  H
Sbjct: 852 SQQICPASVSSEP---LLRTPILV---SLPTFPASGIACTSAQSLVWTQSSH 897


>gi|383852591|ref|XP_003701810.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Megachile rotundata]
          Length = 1135

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 186/400 (46%), Gaps = 56/400 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAICDDGKTKT- 61
           ++  WGS   G+LG+G  E+ E + V + L+  K   +  +  G   ++ I  DG+  + 
Sbjct: 77  NMFCWGSTIHGELGLGGIED-ENILVPRELDFQKATEIEQIACGENYTVLITRDGQVYSC 135

Query: 62  -ENIPSQVNALSNTKIVQ------------AAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
             N   Q+      K +Q             A G  H LAV++ G+ ++WG N  GQ G 
Sbjct: 136 GNNDYGQLGHEKGRKRLQLIPGLDAFVFKKVACGAHHTLAVNEWGQLFSWGSNAEGQLG- 194

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG-- 159
                     +  ++++    C P ++       V QVA G  H + LT  G +++WG  
Sbjct: 195 ----------LNSKNLI---ECVPHMVRALGTSVVVQVACGINHVLALTNNGKLYSWGSN 241

Query: 160 ---QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
              Q     D+K    P  +  L  V +  I  G +H++A+ + GA++ WG N +GQLG 
Sbjct: 242 SDGQLGLGTDVKNEIKPKLISSLAGVPIAFITCGGYHSMAISKSGAVFGWGKNTFGQLGL 301

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            DT+ R+ P  +Q L    +   A G   S  LT DG V+  G G +G+LG G+   S++
Sbjct: 302 NDTRNRNLPRQLQTLQNAKVCYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGNT--SNE 359

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYG--RKVTTGQPME 331
           ++P++V  L G  + Q+SCG  H++ L    G ++++G G  G+LG    R V T Q + 
Sbjct: 360 ILPRQVMELMGSTVTQISCGKRHTLGLVPSRGRVYAWGLGGAGQLGNNITRSVATPQVVH 419

Query: 332 VPINIPAPRNAGD-----GVDRRWIAKLVACGGRHTLAIV 366
            P   P   +  D          +I K +  GG H  A V
Sbjct: 420 GPWVAPNGSSVIDFNEFTSCKTNYIVKHIFTGGDHCFATV 459



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 18/121 (14%)

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           D  ++ WG   HG LG G  +  + +VP++++     +I Q++CG  ++V +TRDG ++S
Sbjct: 75  DKNMFCWGSTIHGELGLGGIEDENILVPRELDFQKATEIEQIACGENYTVLITRDGQVYS 134

Query: 310 FGRGDHGRLGY--GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G  D+G+LG+  GRK     P               G+D  ++ K VACG  HTLA+ E
Sbjct: 135 CGNNDYGQLGHEKGRKRLQLIP---------------GLD-AFVFKKVACGAHHTLAVNE 178

Query: 368 W 368
           W
Sbjct: 179 W 179



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 66/221 (29%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIP-------------------------------- 225
           D  ++ WG+  +G+LG G  +  +  +P                                
Sbjct: 75  DKNMFCWGSTIHGELGLGGIEDENILVPRELDFQKATEIEQIACGENYTVLITRDGQVYS 134

Query: 226 --------------------VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
                               + GL       +A G  H+ A+ + G+++ WG    G+LG
Sbjct: 135 CGNNDYGQLGHEKGRKRLQLIPGLDAFVFKKVACGAHHTLAVNEWGQLFSWGSNAEGQLG 194

Query: 266 FGDNDKS-SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
              N K+  + VP  V  L    +VQV+CG  H +ALT +G ++S+G    G+LG G  V
Sbjct: 195 L--NSKNLIECVPHMVRALGTSVVVQVACGINHVLALTNNGKLYSWGSNSDGQLGLGTDV 252

Query: 325 TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 E+    P   ++  GV        + CGG H++AI
Sbjct: 253 KN----EIK---PKLISSLAGVP----IAFITCGGYHSMAI 282



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 26/177 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDG-- 57
           + +   + +WGS  DGQLG+G + + E    ++ +L    +  +  G  +S+AI   G  
Sbjct: 229 LTNNGKLYSWGSNSDGQLGLGTDVKNEIKPKLISSLAGVPIAFITCGGYHSMAISKSGAV 288

Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          T+  N+P Q+  L N K+  AA G    + +   G  +  G   Y
Sbjct: 289 FGWGKNTFGQLGLNDTRNRNLPRQLQTLQNAKVCYAACGEEFSVFLTVDGGVFTCGAGMY 348

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT-REGHVWTWG 159
           GQ G      + +  IL R ++          V Q++ G  H++ L    G V+ WG
Sbjct: 349 GQLGH----GNTSNEILPRQVMELMGST----VTQISCGKRHTLGLVPSRGRVYAWG 397


>gi|350587982|ref|XP_003129374.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Sus scrofa]
          Length = 1050

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +   
Sbjct: 25  PQVCGFISDRSVKEVACGGDHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADE 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q       + ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRAQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 291

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 292 MGSEVTQIACGRQHTLAFV 310



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 164/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGDHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ G 
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADEHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGL 118

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
               +          + +P R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 119 MTTEES---------VAVP-RLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEE 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRAQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  E +  +A G  H
Sbjct: 36  VKEVACGGDHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADEHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEEDRESPCHVKLL------------RAQKVVYISCGEEHTAVLTK 259



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   EE   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEEDRESPCHVKLLRAQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRAQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|444729789|gb|ELW70193.1| putative E3 ubiquitin-protein ligase HERC3 [Tupaia chinensis]
          Length = 983

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+ +G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ DQG+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDQGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKLL------------RTQKVVYISCGEEHTAVLTK 259



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|417405695|gb|JAA49551.1| Putative e3 ubiquitin-protein ligase herc3 [Desmodus rotundus]
          Length = 1050

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 291

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 292 MGSEVTQIACGRQHTLAFV 310



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEE 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG    ++  +  E P ++   R              ++CG  HT  + +
Sbjct: 215 GMNNAGQLG----LSDEEDRESPCHVKLLRTQK--------VVYISCGEEHTAVLTK 259



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEEDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|426231463|ref|XP_004009758.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Ovis aries]
          Length = 1050

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGANTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+ +G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             + AGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 162/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISPNLQGVVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ DQG+ ++WG    GQ   
Sbjct: 59  GANTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +  G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 131/278 (47%), Gaps = 28/278 (10%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGH 154
            WG    GQ G  P         L+  +  PQ C       V++VA GG HSV L  +G 
Sbjct: 3   CWGYWSLGQPGISPN--------LQGVVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGE 54

Query: 155 VWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           V+T G       G  ++ + P ++  L  + +  +A G  H+LAL + G L++WG    G
Sbjct: 55  VYTCGANTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAGSDG 114

Query: 211 QLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           QLG   T+   + P  +Q L+  T++ ++ G WH  AL  DG+ + WGR  HG+LG G  
Sbjct: 115 QLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQLGLG-K 173

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +  S+  PQ+V  L G  + QV  GG HS AL+  G +F +G  + G+LG   +     P
Sbjct: 174 EFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESP 233

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             V +             R      ++CG  HT  + +
Sbjct: 234 CHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q   GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|345795744|ref|XP_535653.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Canis lupus
           familiaris]
          Length = 1050

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEYPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 291

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 292 MGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEYPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEE 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEYPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG    ++  +  E P ++   R              ++CG  HT  + +
Sbjct: 215 GMNNAGQLG----LSDEEDRESPCHVKLLRTQK--------VVYISCGEEHTAVLTK 259



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEYPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEEDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAKGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAK 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|444916088|ref|ZP_21236212.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444712767|gb|ELW53682.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 823

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 168/349 (48%), Gaps = 32/349 (9%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--ENIPS 66
           AWG    GQLG  +   R     V       V++V AG  +SLA+  DGK  +   N  S
Sbjct: 483 AWGHNFSGQLGDDSTVNRLTPVSVSTASLTDVKNVAAGGFHSLALGSDGKLWSWGSNSLS 542

Query: 67  QVNALSNTKIVQAA--------------IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
           Q+    +T   +A+               G  H L V   G+  AWG N YGQ G     
Sbjct: 543 QLGVSRDTLGSRASPALVSGVSGVVAVAAGETHSLVVLSNGKVSAWGYNGYGQIG----- 597

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
            D    +       P        +  VAAG  HS+ L  +G VW WG+        G + 
Sbjct: 598 -DGCSPVPTFYCSSPTEPTNLFSILGVAAGQNHSLALRSDGTVWAWGRNNSGQLGDGSLV 656

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             + PV+V  L +V  +  G +H+LAL+ DG +WAWG+N  GQLG G    +  P+ V G
Sbjct: 657 DRTRPVQVARLNRVVSVVAGLYHSLALRSDGTVWAWGDNGSGQLGDGTYFGQMLPVQVPG 716

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGED 287
           LSG  +V +AAGG HS AL  DG V+ WG   +G++G G +D S    P  V  L + +D
Sbjct: 717 LSG--VVAVAAGGRHSLALRADGTVWAWGYNSNGQIGDG-SDASIIYRPSPVKVLFSSQD 773

Query: 288 IVQ-VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPI 334
           +V  V+ G THSVA+   G + ++G+ D G+LGY    T    P EV +
Sbjct: 774 VVMGVAAGDTHSVAVLSGGRVRTWGQNDSGQLGYATNNTDRSTPGEVTL 822



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 147/312 (47%), Gaps = 39/312 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           S  ++ AWG   DGQLG+G+         V      +V ++ A + NS A+  DGK    
Sbjct: 106 SDKTLWAWGRNGDGQLGVGSTTSSFSPVKVPGRTGVEVVAMAASTFNSAAVLSDGKVLTW 165

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T  ++ P +V+ALS+ K V  ++G +H LA+   G  +AWG N     
Sbjct: 166 GYNAYGQLGNGSTTDQSSPVEVSALSDIKGV--SVGKYHMLALRSGGTVWAWGFNG---- 219

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
                 +   G         PQ+ A    V  V+AG +HS+ L  +G VW WGQ      
Sbjct: 220 ----SGQLGLGSGSNTQYNTPQQAAVLKGVASVSAGDSHSLALRWDGTVWAWGQNNQGQL 275

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G       PV+V  L  V  +A G FH LAL+ DG +WAWG N  GQLG G T  RS 
Sbjct: 276 GIGSFTDRPSPVQVPRLTGVVEVAAGQFHALALRLDGTVWAWGFNGSGQLGDGTTLSRSS 335

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V GL+G  +V +AAG  HS A+  DG VY WGR   G+LG G  D      P     
Sbjct: 336 PVQVPGLTG--VVSVAAGDGHSVAVLSDGRVYTWGRNSAGQLGDGSQDALPHPTP----- 388

Query: 283 LAGEDIVQVSCG 294
             G+ ++   CG
Sbjct: 389 --GQALLPFVCG 398



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 157/354 (44%), Gaps = 38/354 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           S+  WG+   GQLG G    R     V       V+ V AG  ++LA+  D         
Sbjct: 57  SVWTWGANSGGQLGDGTTAYRLASAPVDFSNGMVVKRVAAGGSHALAVLSDKTLWAWGRN 116

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G T +   P +V   +  ++V  A   ++  AV   G+   WG N YGQ G  
Sbjct: 117 GDGQLGVGSTTSSFSPVKVPGRTGVEVVAMAASTFNSAAVLSDGKVLTWGYNAYGQLGNG 176

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG------QPWP 163
                 +          P   +    ++ V+ G  H + L   G VW WG          
Sbjct: 177 STTDQSS----------PVEVSALSDIKGVSVGKYHMLALRSGGTVWAWGFNGSGQLGLG 226

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G   Q + P +   L+ V  ++ G  H+LAL+ DG +WAWG N  GQLG G    R  P
Sbjct: 227 SGSNTQYNTPQQAAVLKGVASVSAGDSHSLALRWDGTVWAWGQNNQGQLGIGSFTDRPSP 286

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V  L+G+  V++AAG +H+ AL  DG V+ WG    G+LG  D    S+  P +V  L
Sbjct: 287 VQVPRLTGV--VEVAAGQFHALALRLDGTVWAWGFNGSGQLG--DGTTLSRSSPVQVPGL 342

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            G  +V V+ G  HSVA+  DG ++++GR   G+LG G +     P      +P
Sbjct: 343 TG--VVSVAAGDGHSVAVLSDGRVYTWGRNSAGQLGDGSQDALPHPTPGQALLP 394



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/286 (32%), Positives = 141/286 (49%), Gaps = 21/286 (7%)

Query: 54  CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
           CDDG     +  S V  L   +   AA G  + L   D G  + WG N  GQ G+     
Sbjct: 20  CDDGNLVNGDGCSFVCRLETPR---AAAGEAYTLIQRDDGSVWTWGANSGGQLGD----- 71

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
              G    R    P   +  ++V++VAAGG+H++ +  +  +W WG+        G    
Sbjct: 72  ---GTTAYRLASAPVDFSNGMVVKRVAAGGSHALAVLSDKTLWAWGRNGDGQLGVGSTTS 128

Query: 170 ISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              PV+V G   V+++A+ A  F++ A+  DG +  WG N YGQLG G T  +S P+ V 
Sbjct: 129 SFSPVKVPGRTGVEVVAMAASTFNSAAVLSDGKVLTWGYNAYGQLGNGSTTDQSSPVEVS 188

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            LS +  V +  G +H  AL   G V+ WG    G+LG G    +    PQ+  +L G  
Sbjct: 189 ALSDIKGVSV--GKYHMLALRSGGTVWAWGFNGSGQLGLGSGSNTQYNTPQQAAVLKG-- 244

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +  VS G +HS+AL  DG ++++G+ + G+LG G       P++VP
Sbjct: 245 VASVSAGDSHSLALRWDGTVWAWGQNNQGQLGIGSFTDRPSPVQVP 290



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 166/406 (40%), Gaps = 83/406 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLGIG+  +R     V  L    V  V AG  ++LA+            
Sbjct: 263 TVWAWGQNNQGQLGIGSFTDRPSPVQVPRLT--GVVEVAAGQFHALALRLDGTVWAWGFN 320

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE- 108
                 DG T + + P QV  L  T +V  A G  H +AV   GR Y WG N  GQ G+ 
Sbjct: 321 GSGQLGDGTTLSRSSPVQVPGL--TGVVSVAAGDGHSVAVLSDGRVYTWGRNSAGQLGDG 378

Query: 109 ------------------------EPERKDDTGRILRRD--------------------- 123
                                   EPE + D G  +  D                     
Sbjct: 379 SQDALPHPTPGQALLPFVCGNHRLEPEEQCDDGNSINGDGCSALCLAESGSSLCGDGIKA 438

Query: 124 ---------IVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQI 170
                    +V    C+   +L   ++ AG   ++    +G +W WG  +    GD   +
Sbjct: 439 AAEACDDGNLVNGDGCSFVCRLETPRLVAGAKFTLFQKNDGKLWAWGHNFSGQLGDDSTV 498

Query: 171 S----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           +    V V    L  VK +A G FH+LAL  DG LW+WG+N   QLG       S+  P 
Sbjct: 499 NRLTPVSVSTASLTDVKNVAAGGFHSLALGSDGKLWSWGSNSLSQLGVSRDTLGSRASPA 558

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
                  +V +AAG  HS  +  +G+V  WG   +G++G G +   +             
Sbjct: 559 LVSGVSGVVAVAAGETHSLVVLSNGKVSAWGYNGYGQIGDGCSPVPTFYCSSPTEPTNLF 618

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            I+ V+ G  HS+AL  DG ++++GR + G+LG G  V   +P++V
Sbjct: 619 SILGVAAGQNHSLALRSDGTVWAWGRNNSGQLGDGSLVDRTRPVQV 664



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 148/354 (41%), Gaps = 53/354 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG    GQLG+G+    ++    +A     V SV AG  +SLA+  DG        
Sbjct: 211 TVWAWGFNGSGQLGLGSGSNTQYNTPQQAAVLKGVASVSAGDSHSLALRWDGTVWAWGQN 270

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                      + PS V     T +V+ A G +H LA+   G  +AWG N  GQ G+   
Sbjct: 271 NQGQLGIGSFTDRPSPVQVPRLTGVVEVAAGQFHALALRLDGTVWAWGFNGSGQLGD--- 327

Query: 112 RKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIK 168
                G  L R   +     P L  V  VAAG  HSV +  +G V+TWG+      GD  
Sbjct: 328 -----GTTLSRSSPVQ---VPGLTGVVSVAAGDGHSVAVLSDGRVYTWGRNSAGQLGDGS 379

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQE----------DGALWAWGNNEYGQLGTGDTQ 218
           Q ++P    G  Q  L  V   H L  +E          DG   A    E G    GD  
Sbjct: 380 QDALPHPTPG--QALLPFVCGNHRLEPEEQCDDGNSINGDGCS-ALCLAESGSSLCGDGI 436

Query: 219 PRSQPIPVQG----------LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
             +      G          +  L    + AG   +    +DG+++ WG    G+L  GD
Sbjct: 437 KAAAEACDDGNLVNGDGCSFVCRLETPRLVAGAKFTLFQKNDGKLWAWGHNFSGQL--GD 494

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           +   +++ P  V+  +  D+  V+ GG HS+AL  DG ++S+G     +LG  R
Sbjct: 495 DSTVNRLTPVSVSTASLTDVKNVAAGGFHSLALGSDGKLWSWGSNSLSQLGVSR 548



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 81/176 (46%), Gaps = 25/176 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWG    GQLG G+  +R     V  L   +V SVVAG  +SLA+       
Sbjct: 633 LRSDGTVWAWGRNNSGQLGDGSLVDRTRPVQVARLN--RVVSVVAGLYHSLALRSDGTVW 690

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG    + +P QV  LS   +V  A GG H LA+   G  +AWG N  G
Sbjct: 691 AWGDNGSGQLGDGTYFGQMLPVQVPGLSG--VVAVAAGGRHSLALRADGTVWAWGYNSNG 748

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           Q G+  +       I+ R   +    + + +V  VAAG THSV +   G V TWGQ
Sbjct: 749 QIGDGSDAS-----IIYRPSPVKVLFSSQDVVMGVAAGDTHSVAVLSGGRVRTWGQ 799



 Score = 37.7 bits (86), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ AWG    GQLG G    +     V  L    V +V AG R+SLA+  DG   
Sbjct: 683 LRSDGTVWAWGDNGSGQLGDGTYFGQMLPVQVPGLS--GVVAVAAGGRHSLALRADGTVW 740

Query: 60  -------------KTENI---PSQVNALSNTK--IVQAAIGGWHCLAVDDQGRAYAWGGN 101
                           +I   PS V  L +++  ++  A G  H +AV   GR   WG N
Sbjct: 741 AWGYNSNGQIGDGSDASIIYRPSPVKVLFSSQDVVMGVAAGDTHSVAVLSGGRVRTWGQN 800

Query: 102 EYGQCGEEPERKD 114
           + GQ G      D
Sbjct: 801 DSGQLGYATNNTD 813


>gi|281344274|gb|EFB19858.1| hypothetical protein PANDA_001437 [Ailuropoda melanoleuca]
          Length = 1050

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 291

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 292 MGSEVTQIACGRQHTLAFV 310



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEE 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG    ++  +  E P ++   R              ++CG  HT  + +
Sbjct: 215 GMNNAGQLG----LSDEEDRESPCHVKLLRTQK--------VVYISCGEEHTAVLTK 259



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEEDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|301755558|ref|XP_002913646.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC6-like [Ailuropoda melanoleuca]
          Length = 1189

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 34/306 (11%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           +  ++ QAA G  H L +   G  ++ G N  GQ G +  ++D+  + +R          
Sbjct: 21  AGAELRQAASGERHSLLLLSNGELHSCGDNSQGQLGRKGVQRDEHPKRIR--------TL 72

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIA 186
             L V  V+ G  HS+ +  +G V+ WG         G+ K+I+ +P +++ L  +K+I 
Sbjct: 73  DNLRVDLVSCGKEHSLAVCYKGRVFAWGAGSEGQLGVGEFKEINLIPTKIKTLTGIKIIQ 132

Query: 187 V--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWH 243
           V  G +H+LAL E G +++WG+N +GQLG G   P ++ P  V+ L G+ L  +AAGG H
Sbjct: 133 VSCGHYHSLALSEGGQVFSWGSNSHGQLGLGKECPSQASPQRVRSLDGIPLTQVAAGGAH 192

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDND---KSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
           S AL+  G  +GWG    G+L    N+   +S K  P+ +  L    ++ +SCG  H+  
Sbjct: 193 SFALSLSGASFGWGSNNAGQLALRQNNVPVQSHK--PRSIGALKNLGVIYISCGYEHTAV 250

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           LT+ G +F+FG   +G+LG+        P  V           +G+D   +   + CG  
Sbjct: 251 LTQTGKVFTFGGNSYGQLGHSPTAEKEGPQLV-----------EGIDG--LVSQIDCGSY 297

Query: 361 HTLAIV 366
           HTLA V
Sbjct: 298 HTLAYV 303



 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 51/284 (17%)

Query: 11  GSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----------- 59
           G    GQLG    +  E    ++ L+  +V  V  G  +SLA+C  G+            
Sbjct: 48  GDNSQGQLGRKGVQRDEHPKRIRTLDNLRVDLVSCGKEHSLAVCYKGRVFAWGAGSEGQL 107

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 +   IP+++  L+  KI+Q + G +H LA+ + G+ ++WG N +GQ G   E  
Sbjct: 108 GVGEFKEINLIPTKIKTLTGIKIIQVSCGHYHSLALSEGGQVFSWGSNSHGQLGLGKE-- 165

Query: 114 DDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
                        P + +P+ +       + QVAAGG HS  L+  G  + WG     G 
Sbjct: 166 ------------CPSQASPQRVRSLDGIPLTQVAAGGAHSFALSLSGASFGWGSN-NAGQ 212

Query: 167 --IKQISVPVR------VQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
             ++Q +VPV+      +  L+ + +I +  G  H   L + G ++ +G N YGQLG   
Sbjct: 213 LALRQNNVPVQSHKPRSIGALKNLGVIYISCGYEHTAVLTQTGKVFTFGGNSYGQLGHSP 272

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           T  +  P  V+G+ GL +  I  G +H+ A +   G+V  +GRG
Sbjct: 273 TAEKEGPQLVEGIDGL-VSQIDCGSYHTLAYVYTTGKVVSFGRG 315



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 79/203 (38%), Gaps = 67/203 (33%)

Query: 217 TQPRSQPIPVQ-GLSGLTLVDIAAGGWHSTALTDDGE----------------------- 252
           T PR  P   Q G +G  L   A+G  HS  L  +GE                       
Sbjct: 7   TSPRGPPRRRQAGXAGAELRQAASGERHSLLLLSNGELHSCGDNSQGQLGRKGVQRDEHP 66

Query: 253 -----------------------------VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
                                        V+ WG G  G+LG G+  K   ++P K+  L
Sbjct: 67  KRIRTLDNLRVDLVSCGKEHSLAVCYKGRVFAWGAGSEGQLGVGEF-KEINLIPTKIKTL 125

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNA 342
            G  I+QVSCG  HS+AL+  G +FS+G   HG+LG G++  +   P  V         +
Sbjct: 126 TGIKIIQVSCGHYHSLALSEGGQVFSWGSNSHGQLGLGKECPSQASPQRV--------RS 177

Query: 343 GDGVDRRWIAKLVACGGRHTLAI 365
            DG+        VA GG H+ A+
Sbjct: 178 LDGIP----LTQVAAGGAHSFAL 196


>gi|281207647|gb|EFA81827.1| putative protein serine/threonine kinase [Polysphondylium pallidum
           PN500]
          Length = 1626

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 148/291 (50%), Gaps = 18/291 (6%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA--YAWGGNEYGQCGEEPERKD 114
           G  ++ + P QV AL+N  +     GG   +A+     +  Y WG NE+GQ G      D
Sbjct: 164 GDEESISTPKQVVALANIPMKYVFCGGRSTIALSHTAGSGLYTWGNNEFGQLGRGDCGDD 223

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
            T   L   + +P   A +L+   + AG + + V+   G ++TWG+        GD +  
Sbjct: 224 FT--CLPESVAVPG--AKRLVA--LDAGASRAAVIDSSGALFTWGRGDHGRLGHGDTENR 277

Query: 171 SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQ 227
             P  V  L    V  +A+G  H+LAL + G L++WG  E GQLG G  Q +   P  +Q
Sbjct: 278 YQPTLVSSLYGHVVVAVALGGGHSLALTKAGELFSWGRGENGQLGHGSYQSQQLAPKQLQ 337

Query: 228 GLSGL-TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
               +  ++ I+AGG+HS A  DDG VY WG  ++G LG GD+D  +  +PQ++ +  G 
Sbjct: 338 FFVDMPKIIGISAGGYHSVAQLDDGSVYAWGMSDYGILGTGDSDDGAINIPQRILMPRGI 397

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
               +SCG  H+VALT D  I+S+G G  GRLG   +     P  +  NIP
Sbjct: 398 RFKTISCGFQHTVALTSDNTIYSWGCGLGGRLGTFNEKNQCAP--IACNIP 446



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 105/337 (31%), Positives = 162/337 (48%), Gaps = 40/337 (11%)

Query: 45  AGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           +GS N+    DD K  T+  P +       +I+    G  H   +   G+ + WG  +YG
Sbjct: 110 SGSNNN---NDDDKYFTKLYPEE-------RIILVNAGAAHIAMISQSGKLFTWGEGQYG 159

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL--TREGHVWTWGQ-- 160
           + G   E    T + +     IP        ++ V  GG  ++ L  T    ++TWG   
Sbjct: 160 RLGHGDEESISTPKQVVALANIP--------MKYVFCGGRSTIALSHTAGSGLYTWGNNE 211

Query: 161 --PWPPGDIKQ----ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                 GD       +   V V G +++  +  GA     +   GAL+ WG  ++G+LG 
Sbjct: 212 FGQLGRGDCGDDFTCLPESVAVPGAKRLVALDAGASRAAVIDSSGALFTWGRGDHGRLGH 271

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           GDT+ R QP  V  L G  +V +A GG HS ALT  GE++ WGRGE+G+LG G   +S +
Sbjct: 272 GDTENRYQPTLVSSLYGHVVVAVALGGGHSLALTKAGELFSWGRGENGQLGHGSY-QSQQ 330

Query: 275 MVPQKVNLLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + P+++        I+ +S GG HSVA   DG ++++G  D+G LG      TG   +  
Sbjct: 331 LAPKQLQFFVDMPKIIGISAGGYHSVAQLDDGSVYAWGMSDYGILG------TGDSDDGA 384

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
           INIP       G+  R+  K ++CG +HT+A+    T
Sbjct: 385 INIPQRILMPRGI--RF--KTISCGFQHTVALTSDNT 417



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 28/177 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S+ ++  WG G+ G+LG G+ E R    +V +L  + V +V  G  +SLA+   G+    
Sbjct: 254 SSGALFTWGRGDHGRLGHGDTENRYQPTLVSSLYGHVVVAVALGGGHSLALTKAGELFSW 313

Query: 60  -KTEN-------------IPSQVNALSNT-KIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            + EN              P Q+    +  KI+  + GG+H +A  D G  YAWG ++YG
Sbjct: 314 GRGENGQLGHGSYQSQQLAPKQLQFFVDMPKIIGISAGGYHSVAQLDDGSVYAWGMSDYG 373

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRC-APKLI-VRQVAAGGTHSVVLTREGHVWTWG 159
             G        TG      I IPQR   P+ I  + ++ G  H+V LT +  +++WG
Sbjct: 374 ILG--------TGDSDDGAINIPQRILMPRGIRFKTISCGFQHTVALTSDNTIYSWG 422


>gi|327273159|ref|XP_003221348.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Anolis
           carolinensis]
          Length = 1109

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 52/309 (16%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRRDIVIPQRCAPK 133
           + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  + I+        
Sbjct: 95  VKEVACGGNHSIFLLEDGEVYTCGVNTKGQLGHEKEGSKPEQIGALADQHII-------- 146

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVKLIAV- 187
                VA G +HS+ L+ +G +++W     GQ         ++VP  ++ L Q  ++ V 
Sbjct: 147 ----HVACGESHSLALSDQGRLFSWGAGSDGQLGLTTTEDSVAVPRLIKKLNQEMILQVS 202

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHST 245
            G +H LAL  DG  +AWG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS 
Sbjct: 203 CGNWHCLALAADGQFFAWGQNSHGQLGLGKEFPSQASPQRVKSLDGIPLAQVAAGGAHSF 262

Query: 246 ALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           AL+  G V+GWG+   G+LG  D  D+ S   P  V LL  + +V +SCG  H+  LT+ 
Sbjct: 263 ALSLSGAVFGWGKNTSGQLGLSDEQDRES---PCHVKLLRTQKVVYISCGSDHTAVLTKT 319

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL-------VAC 357
           G +F+FG G  G+LG+                    +  D V+ R + +L       +AC
Sbjct: 320 GGVFTFGAGSCGQLGHD-------------------SFNDEVNPRRVLELMGSEVSQIAC 360

Query: 358 GGRHTLAIV 366
           G +HTLA V
Sbjct: 361 GRQHTLAFV 369



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 162/356 (45%), Gaps = 44/356 (12%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI--------------PSQVNALSNTKIVQAAIGGWH 85
           V+ V  G  +S+ + +DG+  T  +              P Q+ AL++  I+  A G  H
Sbjct: 95  VKEVACGGNHSIFLLEDGEVYTCGVNTKGQLGHEKEGSKPEQIGALADQHIIHVACGESH 154

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAG 142
            LA+ DQGR ++WG    GQ           G     D V   R   KL   ++ QV+ G
Sbjct: 155 SLALSDQGRLFSWGAGSDGQ----------LGLTTTEDSVAVPRLIKKLNQEMILQVSCG 204

Query: 143 GTHSVVLTREGHVWTWGQPWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAFHNLAL 195
             H + L  +G  + WGQ          +    + P RV+ L+ + L  +A G  H+ AL
Sbjct: 205 NWHCLALAADGQFFAWGQNSHGQLGLGKEFPSQASPQRVKSLDGIPLAQVAAGGAHSFAL 264

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
              GA++ WG N  GQLG  D Q R  P  V+ L    +V I+ G  H+  LT  G V+ 
Sbjct: 265 SLSGAVFGWGKNTSGQLGLSDEQDRESPCHVKLLRTQKVVYISCGSDHTAVLTKTGGVFT 324

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGD 314
           +G G  G+L  G +  + ++ P++V  L G ++ Q++CG  H++A     G I++FG G 
Sbjct: 325 FGAGSCGQL--GHDSFNDEVNPRRVLELMGSEVSQIACGRQHTLAFVPSSGLIYAFGCGI 382

Query: 315 HGRLGYGRKVTTGQPMEVP-----INIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+LG G       P  V       N P  R A     + ++ K +  GG  T  +
Sbjct: 383 KGQLGSGHTCNLKCPSPVKGHWAAHNEPVSRRA--DACKHYVVKHIFSGGDQTFVL 436



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 114/262 (43%), Gaps = 35/262 (13%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGK--------------TKTEN---IPSQVNALSNT 74
           + AL    +  V  G  +SLA+ D G+              T TE+   +P  +  L+  
Sbjct: 137 IGALADQHIIHVACGESHSLALSDQGRLFSWGAGSDGQLGLTTTEDSVAVPRLIKKLNQE 196

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK- 133
            I+Q + G WHCLA+   G+ +AWG N +GQ G   E               PQR     
Sbjct: 197 MILQVSCGNWHCLALAADGQFFAWGQNSHGQLGLGKEFPSQAS---------PQRVKSLD 247

Query: 134 -LIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL--EQVKLIA 186
            + + QVAAGG HS  L+  G V+ WG+         D +    P  V+ L  ++V  I+
Sbjct: 248 GIPLAQVAAGGAHSFALSLSGAVFGWGKNTSGQLGLSDEQDRESPCHVKLLRTQKVVYIS 307

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G+ H   L + G ++ +G    GQLG         P  V  L G  +  IA G  H+ A
Sbjct: 308 CGSDHTAVLTKTGGVFTFGAGSCGQLGHDSFNDEVNPRRVLELMGSEVSQIACGRQHTLA 367

Query: 247 LT-DDGEVYGWGRGEHGRLGFG 267
                G +Y +G G  G+LG G
Sbjct: 368 FVPSSGLIYAFGCGIKGQLGSG 389



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 93/239 (38%), Gaps = 58/239 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A+     AWG    GQLG+G                                    +  
Sbjct: 211 LAADGQFFAWGQNSHGQLGLGK-----------------------------------EFP 235

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG--- 117
           ++  P +V +L    + Q A GG H  A+   G  + WG N  GQ G   E+  ++    
Sbjct: 236 SQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNTSGQLGLSDEQDRESPCHV 295

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV----- 172
           ++LR   V+   C           G  H+ VLT+ G V+T+G     G +   S      
Sbjct: 296 KLLRTQKVVYISC-----------GSDHTAVLTKTGGVFTFGAG-SCGQLGHDSFNDEVN 343

Query: 173 PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           P RV  L   +V  IA G  H LA     G ++A+G    GQLG+G T     P PV+G
Sbjct: 344 PRRVLELMGSEVSQIACGRQHTLAFVPSSGLIYAFGCGIKGQLGSGHTCNLKCPSPVKG 402



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G  G     +   + P+    +    + +V+CGG HS+ L  DG +++ G    
Sbjct: 63  WGYWSFGYPGTSSTVQPIILEPRTSGFIHERSVKEVACGGNHSIFLLEDGEVYTCGVNTK 122

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ ++ +             P   G   D+  I   VACG  H+LA+
Sbjct: 123 GQLGHEKEGS------------KPEQIGALADQHIIH--VACGESHSLAL 158


>gi|168050967|ref|XP_001777928.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670688|gb|EDQ57252.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 364

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 168/338 (49%), Gaps = 34/338 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ A G G+ GQLGIG+  +      +  L    +  + A   ++  + D+G+  T    
Sbjct: 3   AVYALGRGDLGQLGIGDYSDHPTPTSLSTLVGKDIVHIAASDYHTAFLTDEGEVYTTGSN 62

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       + +P +V AL    +   A G  H +AV + G   +WGG+EYGQ G  
Sbjct: 63  DAGQLGVRGMEEQVVPIRVAALDTHMVTHIACGFKHTVAVTETGALASWGGDEYGQLGF- 121

Query: 110 PERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                D+G I+  D V P+  + +  L   +VAAGG H++ LT  G V+++G        
Sbjct: 122 -----DSGNIV--DGVQPRIVKGSRDLHFSRVAAGGYHTLALTGSGDVYSFGDGSSGALG 174

Query: 164 PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G++   S P  V+ L    V  IA G  H+ AL  DG ++ WG  +YGQLG G TQ   
Sbjct: 175 HGNLDGCSTPSLVKSLWGLGVTQIACGENHSAALTVDGKVFTWGRGKYGQLGHGSTQNIK 234

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ V+ L    ++ IA GG H+ A+T DG ++ WG G  G+ G G   K   + P++V+
Sbjct: 235 LPVAVKALVDHDVIQIACGGDHTLAITSDGRLFSWGHGLWGQTGHG--TKEDVLSPKQVH 292

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            L G  +VQVS G  H+V L   G ++ +G  +  +LG
Sbjct: 293 QLEGRVLVQVSAGARHTVVLLDRGEVYGWGDCEQRQLG 330



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 160/336 (47%), Gaps = 34/336 (10%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           +V A  R  L     G       P+ ++ L    IV  A   +H   + D+G  Y  G N
Sbjct: 3   AVYALGRGDLGQLGIGDYSDHPTPTSLSTLVGKDIVHIAASDYHTAFLTDEGEVYTTGSN 62

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG 159
           + GQ G     +           V+P R A     +V  +A G  H+V +T  G + +WG
Sbjct: 63  DAGQLGVRGMEEQ----------VVPIRVAALDTHMVTHIACGFKHTVAVTETGALASWG 112

Query: 160 QP------WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQ 211
                   +  G+I     P  V+G   +    +A G +H LAL   G ++++G+   G 
Sbjct: 113 GDEYGQLGFDSGNIVDGVQPRIVKGSRDLHFSRVAAGGYHTLALTGSGDVYSFGDGSSGA 172

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG G+    S P  V+ L GL +  IA G  HS ALT DG+V+ WGRG++G+LG G    
Sbjct: 173 LGHGNLDGCSTPSLVKSLWGLGVTQIACGENHSAALTVDGKVFTWGRGKYGQLGHGSTQN 232

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
               +P  V  L   D++Q++CGG H++A+T DG +FS+G G  G+ G+G K     P +
Sbjct: 233 IK--LPVAVKALVDHDVIQIACGGDHTLAITSDGRLFSWGHGLWGQTGHGTKEDVLSPKQ 290

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           V             ++ R + + V+ G RHT+ +++
Sbjct: 291 V-----------HQLEGRVLVQ-VSAGARHTVVLLD 314



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 32/240 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGI--GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
           +  T ++ +WG  E GQLG   GN  +     +VK         V AG  ++LA+   G 
Sbjct: 102 VTETGALASWGGDEYGQLGFDSGNIVDGVQPRIVKGSRDLHFSRVAAGGYHTLALTGSGD 161

Query: 59  TKTE----------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
             +                 + PS V +L    + Q A G  H  A+   G+ + WG  +
Sbjct: 162 VYSFGDGSSGALGHGNLDGCSTPSLVKSLWGLGVTQIACGENHSAALTVDGKVFTWGRGK 221

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           YGQ G    +       ++  + +       +I  Q+A GG H++ +T +G +++WG   
Sbjct: 222 YGQLGHGSTQN------IKLPVAVKALVDHDVI--QIACGGDHTLAITSDGRLFSWGHGL 273

Query: 163 ----PPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G  + +  P +V  LE   L+ V  GA H + L + G ++ WG+ E  QLGT D
Sbjct: 274 WGQTGHGTKEDVLSPKQVHQLEGRVLVQVSAGARHTVVLLDRGEVYGWGDCEQRQLGTCD 333


>gi|195399111|ref|XP_002058164.1| GJ15642 [Drosophila virilis]
 gi|194150588|gb|EDW66272.1| GJ15642 [Drosophila virilis]
          Length = 5062

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 175/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4199 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPIQLAGGEQSLFAVTPDGKLFATGY 4258

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+   G  YAWG  E G+ 
Sbjct: 4259 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTDGEVYAWGEGEDGKL 4318

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  ++L             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4319 GHGNRMSYDRPKLLEH--------LNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4370

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4371 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4430

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4431 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4488

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4489 KVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 4543

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4544 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4570



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 179/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 3046 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFVVSQDGKVYACGEG 3105

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3106 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3165

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R +A G +HS  ++ +G ++TWG        
Sbjct: 3166 HGNRSTLDKPRL------VEALRAKK--IRDIACGSSHSAAISSQGELYTWGLGEYGRLG 3217

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   ++I V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3218 HGDNATQLKPKLVTALHGRRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3277

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             + P  ++ LSG+ ++ I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3278 SATPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3335

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3336 IAGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3388

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3389 ----IGLDAVFVNR-VACGSSHSMA 3408



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 25/237 (10%)

Query: 141  AGGTHSV-VLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFH 191
            AGG+ S+ V++++G V+  G+        G    + +P ++  L Q  VK +AV  G  H
Sbjct: 3084 AGGSKSLFVVSQDGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKH 3143

Query: 192  NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
             LAL  DG +++WG  E G+LG G+     +P  V+ L    + DIA G  HS A++  G
Sbjct: 3144 ALALTLDGKVFSWGEGEDGKLGHGNRSTLDKPRLVEALRAKKIRDIACGSSHSAAISSQG 3203

Query: 252  EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFS 309
            E+Y WG GE+GRLG GDN  ++++ P+ V  L G  ++QV+CG     ++ALT DG +FS
Sbjct: 3204 ELYTWGLGEYGRLGHGDN--ATQLKPKLVTALHGRRVIQVACGSRDAQTLALTEDGAVFS 3261

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +G GD G+LG G    +  P E+       R +G GV +      + CG + +LA+ 
Sbjct: 3262 WGDGDFGKLGRGGSEGSATPHEI------ERLSGIGVIQ------IECGAQFSLALT 3306



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 152/341 (44%), Gaps = 40/341 (11%)

Query: 38  YKVRSVVAGSRNSLAICDDGK------TKTENIPSQVN--ALSNTKIVQAA--IGGWHCL 87
           ++++ V       + +C +GK       K E  P  ++   ++N   V  A    G H L
Sbjct: 571 FQLKQVACSEDMVVLLCQEGKLYNWPIAKPETEPQLLDFAEIANETFVSIAAHCEGRHFL 630

Query: 88  AVDDQGRAYAWGGNE-----YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
           AVD    AY+WG  +     +G C    E       ++RR             V+ V  G
Sbjct: 631 AVDSNHNAYSWGVGDSRRLGHGDCHAR-ELPTKIESLVRR-------------VQSVYCG 676

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGA--FHNLA 194
            ++S  +T  G+++TWG+        G+     +P  V  L+  QV  +A+G+   H L 
Sbjct: 677 CSYSAAITLRGNLYTWGRGTYGRLGHGNSDDQCMPAMVMALKDHQVLDVALGSGDAHTLC 736

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L   G ++AWG+ +YG+LG G      QP+ ++ L  +    + AG   S ALT +G++Y
Sbjct: 737 LTRGGLVYAWGDGDYGKLGNGSCNSSLQPLLIECLPRVQ--RVFAGSQFSLALTCEGQLY 794

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+         + +     VP+ +  L  + IV V+ G  H +AL+ +G IF +GR D
Sbjct: 795 SWGKASCLGHQLVERNVQGCSVPRLITSLQHKRIVHVAVGVAHCLALSSNGEIFGWGRND 854

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           + ++     V +   +  PI +  P     G+    +  L+
Sbjct: 855 NQQICPA-SVCSEPLLRQPIQVTLPTMPASGMACTAVQSLI 894



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 13/212 (6%)

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIA 186
           P     K  ++QVA      V+L +EG ++ W    P  + + +        +     ++
Sbjct: 564 PALLTCKFQLKQVACSEDMVVLLCQEGKLYNWPIAKPETEPQLLDF----AEIANETFVS 619

Query: 187 VGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
           + A     H LA+  +   ++WG  +  +LG GD   R  P  ++ L    +  +  G  
Sbjct: 620 IAAHCEGRHFLAVDSNHNAYSWGVGDSRRLGHGDCHARELPTKIESLVR-RVQSVYCGCS 678

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVA 300
           +S A+T  G +Y WGRG +GRLG G++D   + +P  V  L    ++ V+ G    H++ 
Sbjct: 679 YSAAITLRGNLYTWGRGTYGRLGHGNSD--DQCMPAMVMALKDHQVLDVALGSGDAHTLC 736

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           LTR G ++++G GD+G+LG G   ++ QP+ +
Sbjct: 737 LTRGGLVYAWGDGDYGKLGNGSCNSSLQPLLI 768



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 44/277 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S  +  +WG G+  +LG G+   RE    +++L   +V+SV  G   S AI   G   T 
Sbjct: 634 SNHNAYSWGVGDSRRLGHGDCHARELPTKIESLV-RRVQSVYCGCSYSAAITLRGNLYTW 692

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
                          + +P+ V AL + +++  A+G    H L +   G  YAWG  +YG
Sbjct: 693 GRGTYGRLGHGNSDDQCMPAMVMALKDHQVLDVALGSGDAHTLCLTRGGLVYAWGDGDYG 752

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           + G      + +     + ++I   C P+  V++V AG   S+ LT EG +++WG+    
Sbjct: 753 KLG------NGSCNSSLQPLLI--ECLPR--VQRVFAGSQFSLALTCEGQLYSWGKASCL 802

Query: 165 G------DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
           G      +++  SVP  +  L+  ++  +AVG  H LAL  +G ++ WG N+  Q+    
Sbjct: 803 GHQLVERNVQGCSVPRLITSLQHKRIVHVAVGVAHCLALSSNGEIFGWGRNDNQQICPAS 862

Query: 217 T-------QPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                   QP    +P    SG+    + +  W  T+
Sbjct: 863 VCSEPLLRQPIQVTLPTMPASGMACTAVQSLIWTQTS 899



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 31/233 (13%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------------- 161
           R+++  +  P +  P  ++R  A   T S +L ++  V+  G P                
Sbjct: 495 RLVQPHMPHPTQLLPSCLLRPAATPNTASTILEQQ-RVYALGWPALSKEQQGFNVEPALS 553

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           W     +Q   P  +    Q+K +A      + L ++G L+ W       +   +T+P  
Sbjct: 554 WTSAATQQ-PPPALLTCKFQLKQVACSEDMVVLLCQEGKLYNW------PIAKPETEP-- 604

Query: 222 QPIPVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           Q +    ++  T V IAA   G H  A+  +   Y WG G+  RLG GD    ++ +P K
Sbjct: 605 QLLDFAEIANETFVSIAAHCEGRHFLAVDSNHNAYSWGVGDSRRLGHGDCH--ARELPTK 662

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +  L    +  V CG ++S A+T  G+++++GRG +GRLG+G       P  V
Sbjct: 663 IESLV-RRVQSVYCGCSYSAAITLRGNLYTWGRGTYGRLGHGNSDDQCMPAMV 714


>gi|395834129|ref|XP_003790065.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Otolemur
           garnettii]
          Length = 1050

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 155/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEGGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLTTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT++G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKNGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 162/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + + G+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEGGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G     D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLTTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT +G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKNGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L   G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEGGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLTTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLTTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKNGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 34/178 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +  +G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKNGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCGE---------EPER---KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           GQ G           P +      +G++  R    P R     IV+Q+ +GG  + VL
Sbjct: 325 GQLGTGHTCNVKCPSPVKGYWAAHSGQLSAR----PDRFKYH-IVKQIFSGGDQTFVL 377


>gi|301755552|ref|XP_002913643.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like
           [Ailuropoda melanoleuca]
          Length = 1129

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 104 PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 163

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 164 HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 211

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 212 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 271

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 272 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 329

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 330 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 370

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 371 MGSEVTQIACGRQHTLAFV 389



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 166/361 (45%), Gaps = 43/361 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDD 56
           + S  +++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +D
Sbjct: 74  LDSIRTMLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLED 131

Query: 57  GKTKTE--------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           G+  T               N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG   
Sbjct: 132 GEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGS 191

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG 159
            GQ           G +   D V   R   KL    + QV+ G  H + L  +G  +TWG
Sbjct: 192 DGQ----------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWG 241

Query: 160 -----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
                Q     +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQL
Sbjct: 242 KNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQL 301

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G  D + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  +
Sbjct: 302 GLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMN 359

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  
Sbjct: 360 DEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSP 419

Query: 332 V 332
           V
Sbjct: 420 V 420



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 115 VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 174

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 175 SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 234

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 235 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 293

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG    ++  +  E P ++   R              ++CG  HT  + +
Sbjct: 294 GMNNAGQLG----LSDEEDRESPCHVKLLRTQK--------VVYISCGEEHTAVLTK 338



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 184 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 243

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 244 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 303

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 304 SDEEDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 351

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 352 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 411

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 412 CNVKCPSPVKG 422


>gi|195432783|ref|XP_002064396.1| GK20144 [Drosophila willistoni]
 gi|194160481|gb|EDW75382.1| GK20144 [Drosophila willistoni]
          Length = 4996

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 176/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4146 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4205

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 4206 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 4265

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4266 GHGNRMSYDRPKLVEH--------LNGMSVADIACGSAHSAAITSSGHVLTWGKGRYGRL 4317

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4318 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4377

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4378 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4435

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4436 KVAALQGKKIISIATGSLHCVACSDAGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 4490

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4491 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4517



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 180/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 3028 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHISGGSKSLFIVSQDGKVFACGEG 3087

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3088 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3147

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R VA G +HS  ++ +G ++TWG        
Sbjct: 3148 HGNRTTLDKPRL------VEALRAKK--IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 3199

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P +V  L   ++I V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3200 HGDNATQLKPKQVTALAGRRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3259

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             + P  ++ LSG+ ++ I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3260 SATPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3317

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3318 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3370

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3371 ----IGLDAVFVNR-VACGSSHSIA 3390



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 163/319 (51%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  + G      V   G+ +A G    G+ G            +  
Sbjct: 3049 KVPTFSQTISRLRPIHISGGSKSLFIVSQDGKVFACGEGTNGRLGLG----------VTH 3098

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 3099 NVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 3158

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             V+ L  ++++ +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 3159 LVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNATQLKPKQVTALAGR 3218

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALT+DG V+ WG G+ G+LG G ++ S+   P ++  L+G  ++Q
Sbjct: 3219 RVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSA--TPHEIERLSGIGVIQ 3276

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+            G    R
Sbjct: 3277 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI------------GGLRGR 3324

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R I   VA G  H LA+ +
Sbjct: 3325 RVIH--VAVGALHCLAVTD 3341



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 151/327 (46%), Gaps = 32/327 (9%)

Query: 38  YKVRSVVAGSRNSLAICDDGKT------KTENIPSQVNALSNTKIVQAA--IGGWHCLAV 89
           ++V+ +       L +  DGK       K E  P  +  L+   I+  A    G H LA+
Sbjct: 571 FQVKQIACSESLLLLLSQDGKLYNCRLGKPELEPQPIEELAQETILSIAGHCEGRHFLAI 630

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D    AY+WG  E  + G      D   R +   I    RC     V+ V  G ++S  +
Sbjct: 631 DSNRNAYSWGAGEDHRLGH----GDTHARAVPTKISALDRC-----VKAVFCGCSYSAAI 681

Query: 150 TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGAL 201
           T  G+++TWG+        G+     VP  V  L + ++I V    G  H+L L  +G +
Sbjct: 682 TWSGNLYTWGRGTYGRLGHGNSDDQCVPAIVMALAEYEIIDVALGSGDAHSLCLTSEGLV 741

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           +AWG+ +YG+LG G+     QPI V+ L  +    I AG   S ALT +G +Y WG+   
Sbjct: 742 YAWGDGDYGKLGNGNCNSSLQPILVETLPRVQ--RIFAGAQSSMALTTEGHLYSWGKASC 799

Query: 262 GRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             LG    ++S +   VP+ V+ L  + +V V+ G  H +ALT  G +F +GR D  ++ 
Sbjct: 800 --LGHQQVERSVQGCSVPRLVSSLQHKRLVDVAVGVAHCLALTSCGEVFGWGRNDSQQI- 856

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGV 346
               V+    + +PI +  P     G+
Sbjct: 857 CPSSVSCEPLLRLPILVGLPTLPASGI 883



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 37/236 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S  +  +WG+GED +LG G+   R     + AL+   V++V  G   S AI   G   T 
Sbjct: 632 SNRNAYSWGAGEDHRLGHGDTHARAVPTKISALD-RCVKAVFCGCSYSAAITWSGNLYTW 690

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
                          + +P+ V AL+  +I+  A+G    H L +  +G  YAWG  +YG
Sbjct: 691 GRGTYGRLGHGNSDDQCVPAIVMALAEYEIIDVALGSGDAHSLCLTSEGLVYAWGDGDYG 750

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           + G       +    L+  +V      P+  V+++ AG   S+ LT EGH+++WG+    
Sbjct: 751 KLG-----NGNCNSSLQPILV---ETLPR--VQRIFAGAQSSMALTTEGHLYSWGKASCL 800

Query: 165 G------DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G       ++  SVP  V  L+  +L  +AVG  H LAL   G ++ WG N+  Q+
Sbjct: 801 GHQQVERSVQGCSVPRLVSSLQHKRLVDVAVGVAHCLALTSCGEVFGWGRNDSQQI 856



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 107/270 (39%), Gaps = 53/270 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--RNSLAICDD-- 56
            + S+  ++ WG G  G+LG G++E++    +V+AL  Y+   +  GS    +L I DD  
Sbjct: 4300 ITSSGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDN 4359

Query: 57   --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G +    +P ++ +L+   +++   G    +A+   G  Y WG  +
Sbjct: 4360 VWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGD 4419

Query: 103  YGQCGEEPERKDDTGRI--LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + + G         G +  +RR   +      K+I   +A G  H V  +  G V+TWG 
Sbjct: 4420 FHRLGH--------GSVDHVRRPKKVAALQGKKII--SIATGSLHCVACSDAGEVYTWGD 4469

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G +  I  P  V  L+   ++ V  G+ H LA                 L T
Sbjct: 4470 NDEGQLGDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTLA-----------------LST 4512

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
                 R +P+P   L    + D+A    H+
Sbjct: 4513 SQLSERLRPLPNPPLEYDLVRDLAPEALHA 4542



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 98/267 (36%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +     V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3181 ISSQGELYTWGLGEYGRLGHGDNATQLKPKQVTALAGRRVIQVACGSRDAQTLALTEDGA 3240

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                   P ++  LS   ++Q   G    LA+   G  + WG  +
Sbjct: 3241 VFSWGDGDFGKLGRGGSEGSATPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGD 3300

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 3301 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAW- 3348

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 3349 ---------------------------------------------GDNDHGQQGSGNTFV 3363

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3364 NKKPALVIGLDAVFVNRVACGSSHSIA 3390



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 20/123 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG G+ G+LG GN        +V+ L   +V+ + AG+++S+A+  +G   
Sbjct: 735 LTSEGLVYAWGDGDYGKLGNGNCNSSLQPILVETLP--RVQRIFAGAQSSMALTTEGHLY 792

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           +                   ++P  V++L + ++V  A+G  HCLA+   G  + WG N+
Sbjct: 793 SWGKASCLGHQQVERSVQGCSVPRLVSSLQHKRLVDVAVGVAHCLALTSCGEVFGWGRND 852

Query: 103 YGQ 105
             Q
Sbjct: 853 SQQ 855


>gi|386780812|ref|NP_001248295.1| probable E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
 gi|355687450|gb|EHH26034.1| Putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
 gi|355749437|gb|EHH53836.1| Putative E3 ubiquitin-protein ligase HERC3 [Macaca fascicularis]
 gi|380817668|gb|AFE80708.1| putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
 gi|383408291|gb|AFH27359.1| putative E3 ubiquitin-protein ligase HERC3 [Macaca mulatta]
          Length = 1050

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|402869928|ref|XP_003898995.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Papio anubis]
          Length = 1050

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|332233510|ref|XP_003265945.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Nomascus leucogenys]
          Length = 1050

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|627469|pir||B38919 hypothetical protein 2 - human (fragment)
 gi|40788957|dbj|BAA04945.2| KIAA0032 [Homo sapiens]
          Length = 1054

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 29  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 88

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 89  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 136

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 137 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 196

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 197 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 253

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 254 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 294

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 295 LMGSEVTQIACGRQHTLAFV 314



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 164/356 (46%), Gaps = 43/356 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT 61
           +++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T
Sbjct: 4   TMLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYT 61

Query: 62  E--------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                          N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ  
Sbjct: 62  CGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ-- 119

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----- 159
                    G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     
Sbjct: 120 --------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHG 171

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           Q     +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D 
Sbjct: 172 QLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDE 231

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P
Sbjct: 232 KDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNP 289

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 290 RRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 345



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 40  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 99

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 100 SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 159

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 160 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 218

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 219 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 263



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 109 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 168

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 169 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 228

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 229 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 276

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 277 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 336

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 337 CNVKCPSPVKG 347


>gi|7657152|ref|NP_055421.1| probable E3 ubiquitin-protein ligase HERC3 isoform 1 [Homo sapiens]
 gi|397480079|ref|XP_003811323.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Pan paniscus]
 gi|426344933|ref|XP_004039158.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 1
           [Gorilla gorilla gorilla]
 gi|2495699|sp|Q15034.1|HERC3_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC3; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           3
 gi|119626429|gb|EAX06024.1| hect domain and RLD 3 [Homo sapiens]
 gi|158261003|dbj|BAF82679.1| unnamed protein product [Homo sapiens]
 gi|168274306|dbj|BAG09573.1| E3 ubiquitin-protein ligase HERC3 [synthetic construct]
 gi|187252515|gb|AAI66672.1| Hect domain and RLD 3 [synthetic construct]
 gi|410211922|gb|JAA03180.1| hect domain and RLD 3 [Pan troglodytes]
 gi|410261200|gb|JAA18566.1| hect domain and RLD 3 [Pan troglodytes]
 gi|410295580|gb|JAA26390.1| hect domain and RLD 3 [Pan troglodytes]
 gi|410339519|gb|JAA38706.1| hect domain and RLD 3 [Pan troglodytes]
          Length = 1050

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|403263478|ref|XP_003924058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Saimiri
           boliviensis boliviensis]
          Length = 1050

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRTVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  + +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTSLQGIVAEPQVC--GFISDRTVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 20/248 (8%)

Query: 127 PQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--E 180
           PQ C       V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  +
Sbjct: 25  PQVCGFISDRTVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAA 239
            +  +A G  H+LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ 
Sbjct: 85  HIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSC 144

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS 
Sbjct: 145 GNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 203

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           AL+  G +F +G  + G+LG   +     P  V +             R      ++CG 
Sbjct: 204 ALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLL------------RTQKVVYISCGE 251

Query: 360 RHTLAIVE 367
            HT  + +
Sbjct: 252 EHTAVLTK 259



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|449499989|ref|XP_004174916.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC3-like [Taeniopygia guttata]
          Length = 1050

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     + +  + + A GG H + + + G  Y  G N  GQ G + E  + +  G +  +
Sbjct: 25  PQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHDCEGSKPEQIGALAGQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HSV L+ +G +++WG     Q         ++VP  ++
Sbjct: 85  HIV------------HVACGESHSVALSDQGQLFSWGAGSDGQLGLTTIEDAVTVPRLIK 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N YGQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG+   G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRES---PCHVKLLRSQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG  HTLA V
Sbjct: 291 LMGSEVSQIACGRHHTLAFV 310



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 165/361 (45%), Gaps = 55/361 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY------KVRSVVAGSRNSLAICDDGKTK 60
           ++ WG    GQ GIG+N +     ++   + Y       V+ V  G  +S+ + +DG+  
Sbjct: 1   MLCWGYSSYGQPGIGSNLQ----VIIPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY 56

Query: 61  TENI--------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
           T  +              P Q+ AL+   IV  A G  H +A+ DQG+ ++WG    GQ 
Sbjct: 57  TCGLNTKGQLGHDCEGSKPEQIGALAGQHIVHVACGESHSVALSDQGQLFSWGAGSDGQ- 115

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
                     G     D V   R   KL    + QV+ G  H + L  +G  +TWGQ   
Sbjct: 116 ---------LGLTTIEDAVTVPRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQ--- 163

Query: 164 PGDIKQISV---------PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
                Q+ +         P RV+ L+ + L  +A G  H+ AL   GA++ WG N  GQL
Sbjct: 164 -NSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQL 222

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G  D + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  +
Sbjct: 223 GLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMN 280

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  
Sbjct: 281 DEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSP 340

Query: 332 V 332
           V
Sbjct: 341 V 341



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 134/280 (47%), Gaps = 32/280 (11%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTRE 152
            WG + YGQ G         G  L+  ++IP+      I    V++VA GG HSV L  +
Sbjct: 3   CWGYSSYGQPG--------IGSNLQ--VIIPEPQVYGFIHDRNVKEVACGGNHSVFLLED 52

Query: 153 GHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           G V+T G       G   + S P ++  L  + +  +A G  H++AL + G L++WG   
Sbjct: 53  GEVYTCGLNTKGQLGHDCEGSKPEQIGALAGQHIVHVACGESHSVALSDQGQLFSWGAGS 112

Query: 209 YGQLG-TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
            GQLG T      + P  ++ L+  T++ ++ G WH  AL  DG+ + WG+  +G+LG G
Sbjct: 113 DGQLGLTTIEDAVTVPRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLG 172

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
             +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +G+   G+LG   +    
Sbjct: 173 -KECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRE 231

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            P  V +             R      ++CG  HT  + +
Sbjct: 232 SPCHVKLL------------RSQKVVYISCGEEHTAVLTK 259



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  ++K L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLTTIEDAVTVPRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             ER  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDERDRESPCHVKLLRSQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +  +RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|296196017|ref|XP_002745644.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Callithrix jacchus]
          Length = 1050

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|91203943|emb|CAJ71596.1| similar to regulator of chromosome condensation [Candidatus
           Kuenenia stuttgartiensis]
          Length = 387

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 148/292 (50%), Gaps = 34/292 (11%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           + A G +H LA+   G  ++WG NEYGQ G+        G I  +   +  +    +IV 
Sbjct: 41  KIAAGAFHTLALKPDGSLWSWGKNEYGQLGD--------GTIKNKHSPVQVKHLSSIIV- 91

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            +  G  HS+ L  +G VW WG  W      G  K  ++P++ + L  +  I+ G  HNL
Sbjct: 92  -IDGGAWHSIALKSDGTVWAWGGNWAGQLGDGSYKSSNIPIKTKELSGIIAISCGGQHNL 150

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+ DG +WAWG N+ GQLG GD + +  PI + GL+   +V I+AGG+HS A+  DG +
Sbjct: 151 ALKSDGTVWAWGINDKGQLGIGDAKNQQIPIRIPGLN--NIVAISAGGYHSLAIKSDGSL 208

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG     +L  GD   +++  P  V+ L   DI+ V+ GG  S+AL  DG I ++G  
Sbjct: 209 WAWGSNNMEQL--GDGSATNRCSPVHVSNL--RDIIAVNGGGDFSLALKSDGTIMAWGSN 264

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              +LG G       P+ V              D R I + +A  G H+LA+
Sbjct: 265 GLSQLGDGTTTNRNTPVNVS-------------DVRDIIE-IAAKGNHSLAL 302



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 151/322 (46%), Gaps = 36/322 (11%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           +N      DG  K ++ P QV  LS+  ++    G WH +A+   G  +AWGGN  GQ G
Sbjct: 63  KNEYGQLGDGTIKNKHSPVQVKHLSSIIVIDG--GAWHSIALKSDGTVWAWGGNWAGQLG 120

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
           +   +  +          IP +      +  ++ GG H++ L  +G VW WG        
Sbjct: 121 DGSYKSSN----------IPIKTKELSGIIAISCGGQHNLALKSDGTVWAWGINDKGQLG 170

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            GD K   +P+R+ GL  +  I+ G +H+LA++ DG+LWAWG+N   QLG G    R  P
Sbjct: 171 IGDAKNQQIPIRIPGLNNIVAISAGGYHSLAIKSDGSLWAWGSNNMEQLGDGSATNRCSP 230

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V  L  +  V+   GG  S AL  DG +  W  G +G    GD   +++  P  VN+ 
Sbjct: 231 VHVSNLRDIIAVN--GGGDFSLALKSDGTIMAW--GSNGLSQLGDGTTTNRNTP--VNVS 284

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
              DI++++  G HS+ALT +G ++ FG                 P E  + +PA R   
Sbjct: 285 DVRDIIEIAAKGNHSLALTIEGKVWEFGS------------IGATPTEKEVTLPAYRPVL 332

Query: 344 DGVDRRWIAKLVACGGRHTLAI 365
                  IA  +ACG  H + +
Sbjct: 333 VNEITDVIA--IACGEFHNVVL 352



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 117/202 (57%), Gaps = 10/202 (4%)

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAF 190
           +  ++AAG  H++ L  +G +W+WG+        G IK    PV+V+ L  + +I  GA+
Sbjct: 38  VAPKIAAGAFHTLALKPDGSLWSWGKNEYGQLGDGTIKNKHSPVQVKHLSSIIVIDGGAW 97

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H++AL+ DG +WAWG N  GQLG G  +  + PI  + LSG  ++ I+ GG H+ AL  D
Sbjct: 98  HSIALKSDGTVWAWGGNWAGQLGDGSYKSSNIPIKTKELSG--IIAISCGGQHNLALKSD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G V+ WG  + G+LG G  D  ++ +P ++  L   +IV +S GG HS+A+  DG ++++
Sbjct: 156 GTVWAWGINDKGQLGIG--DAKNQQIPIRIPGL--NNIVAISAGGYHSLAIKSDGSLWAW 211

Query: 311 GRGDHGRLGYGRKVTTGQPMEV 332
           G  +  +LG G       P+ V
Sbjct: 212 GSNNMEQLGDGSATNRCSPVHV 233



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 149/338 (44%), Gaps = 62/338 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG    GQLG                                    DG  K
Sbjct: 102 LKSDGTVWAWGGNWAGQLG------------------------------------DGSYK 125

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
           + NIP +   LS   I+  + GG H LA+   G  +AWG N+ GQ G    +        
Sbjct: 126 SSNIPIKTKELSG--IIAISCGGQHNLALKSDGTVWAWGINDKGQLGIGDAKNQQ----- 178

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRV 176
                IP R      +  ++AGG HS+ +  +G +W WG    +    G       PV V
Sbjct: 179 -----IPIRIPGLNNIVAISAGGYHSLAIKSDGSLWAWGSNNMEQLGDGSATNRCSPVHV 233

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
             L  +  +  G   +LAL+ DG + AWG+N   QLG G T  R+ P+ V  +    +++
Sbjct: 234 SNLRDIIAVNGGGDFSLALKSDGTIMAWGSNGLSQLGDGTTTNRNTPVNVSDVR--DIIE 291

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE--DIVQVSCG 294
           IAA G HS ALT +G+V+     E G +G    +K   + P    +L  E  D++ ++CG
Sbjct: 292 IAAKGNHSLALTIEGKVW-----EFGSIGATPTEKEVTL-PAYRPVLVNEITDVIAIACG 345

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H+V L  DG ++ +G  + G+LG G   +  +P+ +
Sbjct: 346 EFHNVVLKNDGSLWVWGINNFGQLGDGTVGSKTKPVLI 383


>gi|336116892|ref|YP_004571659.1| hypothetical protein MLP_12420 [Microlunatus phosphovorus NM-1]
 gi|334684671|dbj|BAK34256.1| hypothetical protein MLP_12420 [Microlunatus phosphovorus NM-1]
          Length = 508

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 154/325 (47%), Gaps = 46/325 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           S+ +WG  +  QLG G  E R     V  L  + V+++ AG   SLA+  DG        
Sbjct: 198 SVWSWGRNDWAQLGDGTKETRHAPVDVMHLARFGVKAIAAGGWTSLALLKDGTVWSWGAN 257

Query: 60  ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           IP +V  LS    V   IGGWH LA+ + G  ++WG    GQ G
Sbjct: 258 DWRQLGAGDTGFNAHTIPVKVEGLSGVTAVD--IGGWHSLALREDGTVWSWGHGHQGQLG 315

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                 D T        V+P        V+ V+AG  HS+ L R+G VW+WG        
Sbjct: 316 ------DGTNSDHNAAAVVPGLSG----VKAVSAGYRHSLALLRDGTVWSWGYNAQGQLG 365

Query: 164 PGDIKQISVPVRVQGLE-QVKLIAVGA---FHN----LALQEDGALWAWGNNEYGQLGTG 215
            G     + PV+V  L  +VK IA  +   FH+    LAL EDG +W+WG N++ QLG G
Sbjct: 366 DGTNTNRNTPVKVASLGGRVKAIAASSSNVFHDPSFSLALLEDGTVWSWGTNDWHQLGDG 425

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
               R+ P+ V  LSG+    IA GG HS AL  DG V+GWG  +HG++G GD       
Sbjct: 426 TNTSRNTPVKVSDLSGVKA--IAPGGRHSLALLKDGTVWGWGANDHGQVGTGDGTPDRYA 483

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVA 300
            P K+  ++   +  ++ GG HS+A
Sbjct: 484 APVKIEGIS--HVKAIAAGGWHSIA 506



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/383 (31%), Positives = 177/383 (46%), Gaps = 50/383 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------- 59
           WG  + G+LG G N+ R     +  L+   V ++  G   SLA+ +DG            
Sbjct: 150 WGQNDHGELGDGTNKRRFAPSPMPYLDQVGVSAIDGGGWFSLALLNDGSVWSWGRNDWAQ 209

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 +T + P  V  L+   +   A GGW  LA+   G  ++WG N++ Q G      
Sbjct: 210 LGDGTKETRHAPVDVMHLARFGVKAIAAGGWTSLALLKDGTVWSWGANDWRQLG-----A 264

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
            DTG        IP +      V  V  GG HS+ L  +G VW+WG         G    
Sbjct: 265 GDTGFNAH---TIPVKVEGLSGVTAVDIGGWHSLALREDGTVWSWGHGHQGQLGDGTNSD 321

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            +    V GL  VK ++ G  H+LAL  DG +W+WG N  GQLG G    R+ P+ V  L
Sbjct: 322 HNAAAVVPGLSGVKAVSAGYRHSLALLRDGTVWSWGYNAQGQLGDGTNTNRNTPVKVASL 381

Query: 230 SGLTLVDIAAGG--WH----STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            G      A+    +H    S AL +DG V+ WG  +  +LG G N  +S+  P KV+ L
Sbjct: 382 GGRVKAIAASSSNVFHDPSFSLALLEDGTVWSWGTNDWHQLGDGTN--TSRNTPVKVSDL 439

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           +G  +  ++ GG HS+AL +DG ++ +G  DHG++G G    T      P+ I       
Sbjct: 440 SG--VKAIAPGGRHSLALLKDGTVWGWGANDHGQVGTGDG--TPDRYAAPVKI------- 488

Query: 344 DGVDRRWIAKLVACGGRHTLAIV 366
           +G+      K +A GG H++A +
Sbjct: 489 EGISH---VKAIAAGGWHSIAAL 508



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 162/328 (49%), Gaps = 46/328 (14%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG  K    PS +  L    +     GGW  LA+ + G  ++WG N++ Q G+       
Sbjct: 160 DGTNKRRFAPSPMPYLDQVGVSAIDGGGWFSLALLNDGSVWSWGRNDWAQLGD------- 212

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI----- 170
            G    R   +      +  V+ +AAGG  S+ L ++G VW+WG      D +Q+     
Sbjct: 213 -GTKETRHAPVDVMHLARFGVKAIAAGGWTSLALLKDGTVWSWG----ANDWRQLGAGDT 267

Query: 171 -----SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                ++PV+V+GL  V  + +G +H+LAL+EDG +W+WG+   GQLG G     +    
Sbjct: 268 GFNAHTIPVKVEGLSGVTAVDIGGWHSLALREDGTVWSWGHGHQGQLGDGTNSDHNAAAV 327

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLSG+  V  +AG  HS AL  DG V+ WG    G+LG G N  +++  P KV  L G
Sbjct: 328 VPGLSGVKAV--SAGYRHSLALLRDGTVWSWGYNAQGQLGDGTN--TNRNTPVKVASLGG 383

Query: 286 --EDIVQVSCGGTH----SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
             + I   S    H    S+AL  DG ++S+G  D  +LG G   +   P++V       
Sbjct: 384 RVKAIAASSSNVFHDPSFSLALLEDGTVWSWGTNDWHQLGDGTNTSRNTPVKV------- 436

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +   GV      K +A GGRH+LA+++
Sbjct: 437 -SDLSGV------KAIAPGGRHSLALLK 457



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 26/249 (10%)

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + + WG N++G+ G+   +        RR    P     ++ V  +  GG  S+ L  +G
Sbjct: 146 QGWVWGQNDHGELGDGTNK--------RRFAPSPMPYLDQVGVSAIDGGGWFSLALLNDG 197

Query: 154 HVWTWGQ-PWP---PGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNN 207
            VW+WG+  W     G  +    PV V  L +  VK IA G + +LAL +DG +W+WG N
Sbjct: 198 SVWSWGRNDWAQLGDGTKETRHAPVDVMHLARFGVKAIAAGGWTSLALLKDGTVWSWGAN 257

Query: 208 EYGQLGTGDTQPRSQPIPV--QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           ++ QLG GDT   +  IPV  +GLSG+T VDI  GGWHS AL +DG V+ WG G  G+LG
Sbjct: 258 DWRQLGAGDTGFNAHTIPVKVEGLSGVTAVDI--GGWHSLALREDGTVWSWGHGHQGQLG 315

Query: 266 FGDND--KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
            G N    ++ +VP     L+G  +  VS G  HS+AL RDG ++S+G    G+LG G  
Sbjct: 316 DGTNSDHNAAAVVPG----LSG--VKAVSAGYRHSLALLRDGTVWSWGYNAQGQLGDGTN 369

Query: 324 VTTGQPMEV 332
                P++V
Sbjct: 370 TNRNTPVKV 378



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 112/218 (51%), Gaps = 22/218 (10%)

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
           W WGQ        G  K+   P  +  L+QV + A+  G + +LAL  DG++W+WG N++
Sbjct: 148 WVWGQNDHGELGDGTNKRRFAPSPMPYLDQVGVSAIDGGGWFSLALLNDGSVWSWGRNDW 207

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
            QLG G  + R  P+ V  L+   +  IAAGGW S AL  DG V+ WG  +  +LG GD 
Sbjct: 208 AQLGDGTKETRHAPVDVMHLARFGVKAIAAGGWTSLALLKDGTVWSWGANDWRQLGAGDT 267

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
             ++  +P KV  L+G  +  V  GG HS+AL  DG ++S+G G  G+LG G        
Sbjct: 268 GFNAHTIPVKVEGLSG--VTAVDIGGWHSLALREDGTVWSWGHGHQGQLGDGTNSDHNAA 325

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             VP           GV      K V+ G RH+LA++ 
Sbjct: 326 AVVP--------GLSGV------KAVSAGYRHSLALLR 349


>gi|198471444|ref|XP_001355626.2| GA11166 [Drosophila pseudoobscura pseudoobscura]
 gi|198145920|gb|EAL32685.2| GA11166 [Drosophila pseudoobscura pseudoobscura]
          Length = 5072

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 174/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN- 63
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4236 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4295

Query: 64   ---------------IPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                           IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 4296 GSGGRLGVGGADSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 4355

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4356 GHGNRMSYDRPKLVEH--------LNGMNVADIACGSAHSAAITASGHVLTWGKGRYGRL 4407

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4408 GHGDSEDQLRPQLVEALLGYRAIDIACGSGDAQTLCINDDDNVWSWGDGDYGKLGRGGSD 4467

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4468 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4525

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4526 KVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 4580

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4581 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4607



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  +GK       
Sbjct: 3096 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVGQNGKVYACGEG 3155

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3156 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3215

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++  + +  ++      +R VA G +HS  ++ +G ++TWG        
Sbjct: 3216 HGNRTTLDKPRLV--ETLRSKK------IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 3267

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   ++I V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3268 HGDNSTQLKPKLVAALAGRRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3327

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ ++ I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3328 SDTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3385

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3386 IAGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3438

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3439 ----IGLDAVFVNR-VACGSSHSIA 3458



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  A G      V   G+ YA G    G+ G            +  
Sbjct: 3117 KVPTFSQTISRLRPIHIAGGSKSLFIVGQNGKVYACGEGTNGRLGLG----------VTH 3166

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 3167 NVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 3226

Query: 175  RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             V+ L   K+  +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 3227 LVETLRSKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNSTQLKPKLVAALAGR 3286

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALT+DG V+ WG G+ G+LG G ++ S    P ++  L+G  ++Q
Sbjct: 3287 RVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSD--TPHEIERLSGIGVIQ 3344

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+              G+  
Sbjct: 3345 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPIA-------------GLRG 3391

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R +   VA G  H LA+ +
Sbjct: 3392 RRVIH-VAVGALHCLAVTD 3409



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 157/327 (48%), Gaps = 32/327 (9%)

Query: 38  YKVRSVVAGSRNSLAICDDGKT------KTENIPSQVNALSNTKIVQAA--IGGWHCLAV 89
           ++V+ +V      L + +DGK       K E  P  +  +++  IV  A    G H +A+
Sbjct: 576 FQVQQIVCSESIVLILSEDGKLYNWRMFKPETEPQLLEEIAHETIVSIASHCEGRHFMAI 635

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D    AY+WG  E  + G      D   R +   I +  RC     V+ V  G ++S  +
Sbjct: 636 DINRNAYSWGNGEDHRLGH----GDTHARAVPTKITLLDRC-----VKAVFCGCSYSAAI 686

Query: 150 TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGAL 201
           T  G+++TWG+        G+     +P  V  L + ++I V    G  H+L L  +G +
Sbjct: 687 TCSGNLYTWGRGTYARLGHGNSDDQPLPTVVMALTEHEIIDVALGSGDAHSLCLTSEGHV 746

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           +AWG+ +YG+LG G+      P+ V+ L  +    + AG   S ALT DG++Y WG+   
Sbjct: 747 YAWGDADYGKLGNGNLNGSMSPVLVESLPKVQ--RVFAGAQFSMALTTDGQLYSWGKASC 804

Query: 262 GRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             LG    ++S++   VP+ ++ L  + IV V+ G  H +AL+  G +F +GR D  ++ 
Sbjct: 805 --LGHQLVERSAQWCSVPRLISGLQHKRIVDVAVGVAHCLALSSCGEVFGWGRNDSQQI- 861

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGV 346
               V++   + VPI +  P     GV
Sbjct: 862 CPSSVSSEPLLRVPILVALPTLPASGV 888



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 52/215 (24%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++  WG G   +LG GN++++    VV AL  +++  V  GS                  
Sbjct: 691 NLYTWGRGTYARLGHGNSDDQPLPTVVMALTEHEIIDVALGS------------------ 732

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
                           G  H L +  +G  YAWG  +YG+ G         G +      
Sbjct: 733 ----------------GDAHSLCLTSEGHVYAWGDADYGKLG--------NGNLNGSMSP 768

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG------DIKQISVPVRVQGL 179
           +     PK  V++V AG   S+ LT +G +++WG+    G        +  SVP  + GL
Sbjct: 769 VLVESLPK--VQRVFAGAQFSMALTTDGQLYSWGKASCLGHQLVERSAQWCSVPRLISGL 826

Query: 180 EQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           +  ++  +AVG  H LAL   G ++ WG N+  Q+
Sbjct: 827 QHKRIVDVAVGVAHCLALSSCGEVFGWGRNDSQQI 861



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 100/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3249 ISSQGELYTWGLGEYGRLGHGDNSTQLKPKLVAALAGRRVIQVACGSRDAQTLALTEDGA 3308

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 + P ++  LS   ++Q   G    LA+   G  + WG  +
Sbjct: 3309 VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGD 3368

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 3369 YYRLGHGGDQHVRKPQPIAGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAW- 3416

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 3417 ---------------------------------------------GDNDHGQQGSGNTFV 3431

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3432 NKKPALVIGLDAVFVNRVACGSSHSIA 3458



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 26/169 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG  + G+LG GN        +V++L   KV+ V AG++ S+A+  DG+  
Sbjct: 740 LTSEGHVYAWGDADYGKLGNGNLNGSMSPVLVESLP--KVQRVFAGAQFSMALTTDGQLY 797

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           +                   ++P  ++ L + +IV  A+G  HCLA+   G  + WG N+
Sbjct: 798 SWGKASCLGHQLVERSAQWCSVPRLISGLQHKRIVDVAVGVAHCLALSSCGEVFGWGRND 857

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
             Q        +    +LR  I++     P L    VA   + S++ T+
Sbjct: 858 SQQICPSSVSSEP---LLRVPILV---ALPTLPASGVACTASQSLIWTQ 900


>gi|226311363|ref|YP_002771257.1| hypothetical protein BBR47_17760 [Brevibacillus brevis NBRC 100599]
 gi|226094311|dbj|BAH42753.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 323

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 141/281 (50%), Gaps = 25/281 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG  +  N P  V  L  T + + A G  H LA+   G  + WG N  GQ G       +
Sbjct: 64  DGTFEQRNEPVLVKGL--TGVTKIAAGSSHSLALKSDGTVWGWGWNGKGQLGNNTTTSSN 121

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVR 175
             +        P +      V  +AAG  H + L ++G VW WG           ++P R
Sbjct: 122 ISK--------PVQAVGLTDVIDIAAGDAHGLALKKDGTVWIWGS-------NSTNLPTR 166

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           V+ L  V+ IA    HNL +++DG +W+WG N YGQLG  +T  +  P  V  LS   +V
Sbjct: 167 VESLTDVRAIAAAGAHNLTVKKDGTVWSWGWNGYGQLGINNTGSKDVPTKVSNLS--NIV 224

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            +AAG  HS AL  +G+VY WG   +G++G  D   + +  P +V  L   DIV+++ G 
Sbjct: 225 SVAAGFHHSLALDVEGKVYAWGGNTYGQVG--DGTTTQRNAPVEVPSLV--DIVEIASGS 280

Query: 296 T--HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
              H++AL +DG ++++G G  G+LG G    +  P++V I
Sbjct: 281 YSYHTLALKKDGTVYAWGLGTSGQLGNGTTTNSNIPIQVNI 321



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 144/302 (47%), Gaps = 53/302 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG+  +GQLG G  E+R    +VK L    V  + AGS +SLA+  DG        
Sbjct: 50  TVWAWGNNGNGQLGDGTFEQRNEPVLVKGLT--GVTKIAAGSSHSLALKSDGTVWGWGWN 107

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T + NI   V A+  T ++  A G  H LA+   G  + WG N        
Sbjct: 108 GKGQLGNNTTTSSNISKPVQAVGLTDVIDIAAGDAHGLALKKDGTVWIWGSNSTN----- 162

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------ 163
                           +P R      VR +AA G H++ + ++G VW+WG  W       
Sbjct: 163 ----------------LPTRVESLTDVRAIAAAGAHNLTVKKDGTVWSWG--WNGYGQLG 204

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
             +     VP +V  L  +  +A G  H+LAL  +G ++AWG N YGQ+G G T  R+ P
Sbjct: 205 INNTGSKDVPTKVSNLSNIVSVAAGFHHSLALDVEGKVYAWGGNTYGQVGDGTTTQRNAP 264

Query: 224 IPVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           + V  L  + +V+IA+G   +H+ AL  DG VY WG G  G+LG G    S+  +P +VN
Sbjct: 265 VEVPSL--VDIVEIASGSYSYHTLALKKDGTVYAWGLGTSGQLGNGTTTNSN--IPIQVN 320

Query: 282 LL 283
           ++
Sbjct: 321 IV 322



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 138/283 (48%), Gaps = 47/283 (16%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           I SQ    +   ++ +A GG H L +   G  +AWG N  GQ G               D
Sbjct: 20  ILSQETTFAAGNVISSAAGGSHSLILRSDGTVWAWGNNGNGQLG---------------D 64

Query: 124 IVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP-PGDI-------KQI 170
               QR  P L+     V ++AAG +HS+ L  +G VW WG  W   G +         I
Sbjct: 65  GTFEQRNEPVLVKGLTGVTKIAAGSSHSLALKSDGTVWGWG--WNGKGQLGNNTTTSSNI 122

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S PV+  GL  V  IA G  H LAL++DG +W WG+N             + P  V+ L+
Sbjct: 123 SKPVQAVGLTDVIDIAAGDAHGLALKKDGTVWIWGSNS-----------TNLPTRVESLT 171

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            +    IAA G H+  +  DG V+ WG   +G+LG   N+  SK VP KV+ L+  +IV 
Sbjct: 172 DVRA--IAAAGAHNLTVKKDGTVWSWGWNGYGQLGI--NNTGSKDVPTKVSNLS--NIVS 225

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           V+ G  HS+AL  +G ++++G   +G++G G       P+EVP
Sbjct: 226 VAAGFHHSLALDVEGKVYAWGGNTYGQVGDGTTTQRNAPVEVP 268


>gi|431911482|gb|ELK13688.1| Putative E3 ubiquitin-protein ligase HERC3 [Pteropus alecto]
          Length = 1017

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 152/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 72  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 131

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQ 177
           +IV             VA G +HS+ L+  G +++W     GQ         ++VP  +Q
Sbjct: 132 NIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 179

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 180 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 239

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+ WG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 240 AQVAAGGAHSFALSLSGAVFAWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 297

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 298 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 338

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 339 MGSEVTQIACGRQHTLAFV 357



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 151/318 (47%), Gaps = 37/318 (11%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTE--------------NIPSQVNALSNTKIVQAAIGGWH 85
           V+ V  G  +S+ + +DG+  T               N P Q+ AL++  IV  A G  H
Sbjct: 83  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQNIVHVACGESH 142

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAG 142
            LA+ D+G+ ++WG    GQ           G +   D V   R   KL    + QV+ G
Sbjct: 143 SLALSDRGQLFSWGAGSDGQ----------LGLMTTEDSVAVPRLIQKLNQQTILQVSCG 192

Query: 143 GTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLAL 195
             H + L  +G  +TWG     Q     +    + P RV+ LE + L  +A G  H+ AL
Sbjct: 193 NWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFAL 252

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
              GA++AWG N  GQLG  D + R  P  V+ L    +V I+ G  H+  LT  G V+ 
Sbjct: 253 SLSGAVFAWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFT 312

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGD 314
           +G G  G+L  G +  + ++ P++V  L G ++ Q++CG  H++A     G I++FG G 
Sbjct: 313 FGAGSCGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGA 370

Query: 315 HGRLGYGRKVTTGQPMEV 332
            G+LG G       P  V
Sbjct: 371 RGQLGTGHTCNVKCPSPV 388



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 20/255 (7%)

Query: 120 LRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVR 175
           LR  +  PQ C       V++VA GG HSV L  +G V+T G       G  ++ + P +
Sbjct: 65  LRGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQ 124

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGL 232
           +  L  + +  +A G  H+LAL + G L++WG    GQLG   T+   + P  +Q L+  
Sbjct: 125 IGALADQNIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQ 184

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+
Sbjct: 185 TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVA 243

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            GG HS AL+  G +F++G  + G+LG   +     P  V +             R    
Sbjct: 244 AGGAHSFALSLSGAVFAWGMNNAGQLGLSDEEDRESPCHVKLL------------RTQKV 291

Query: 353 KLVACGGRHTLAIVE 367
             ++CG  HT  + +
Sbjct: 292 VYISCGEEHTAVLTK 306



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 152 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 211

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  +AWG N  GQ G 
Sbjct: 212 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFAWGMNNAGQLGL 271

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 272 SDEEDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 319

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 320 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 379

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 380 CNVKCPSPVKG 390



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++ AWG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 252 LSLSGAVFAWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 311

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 312 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 371

Query: 104 GQCG 107
           GQ G
Sbjct: 372 GQLG 375


>gi|338723767|ref|XP_001496703.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Equus
           caballus]
          Length = 1050

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 153/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +H++ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHNLALSDRGQLFSWGAGSDGQLGLMTTEDAVAVPRVIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H+LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHSLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 291

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 292 MGSEVTQIACGRQHTLAFV 310



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 164/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHNLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  HS+ L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDAVAVPRVIQKLNQQTILQVSCGNWHSLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEE 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           NLAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WHS AL  D
Sbjct: 96  NLALSDRGQLFSWGAGSDGQLGLMTTEDAVAVPRVIQKLNQQTILQVSCGNWHSLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG    ++  +  E P ++   R              ++CG  HT  + +
Sbjct: 215 GMNNAGQLG----LSDEEDRESPCHVKLLRTQK--------VVYISCGEEHTAVLTK 259



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  V++ L    +  V  G+ +SLA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDAVAVPRVIQKLNQQTILQVSCGNWHSLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E   ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEEDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|224495959|ref|NP_001139096.1| probable E3 ubiquitin-protein ligase HERC3 [Danio rerio]
          Length = 1046

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 191/390 (48%), Gaps = 46/390 (11%)

Query: 7   IIAWGSGEDGQLGIGNNE----EREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WGS   GQLGIG +E    E    CV    +   ++ V  G+++SL +  DG   T 
Sbjct: 2   MLCWGSSGAGQLGIGASEASVFEPRSCCV---FDGRGLKEVACGNQHSLFLLHDGSVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         + P  V AL   KI   + G  H LAV++QG+ +AWG  + GQ G 
Sbjct: 59  GSNSCGQLGHDKGGSRPELVGALDAQKISGVSCGQAHSLAVNEQGQVFAWGAGDGGQLG- 117

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----- 163
                ++  R+ R   +I + C  +  + QV  G  H + L+++G ++ WG+        
Sbjct: 118 -LGTAEEAVRVPR---LIKKLCEHR--ISQVMCGNHHCIALSKDGQLFVWGENSSGQLGL 171

Query: 164 -PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             G+   +S P  ++ L  + L  I+ G  H+ AL   GA++ WG N  GQLG  D Q R
Sbjct: 172 GKGEPSTLS-PQPLKSLCGIPLTQISAGGDHSFALSFSGAVFGWGKNSAGQLGLNDEQDR 230

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P  ++ L    +V I+ G  H+ ALT +G ++ +G G  G+L  G +   ++ +P++V
Sbjct: 231 AVPCHIKFLRSQKVVYISCGEEHTAALTKEGGLFTFGNGSKGQL--GHDSTRNEPLPRRV 288

Query: 281 NLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
             L G ++ Q++CG  H++A     G I++FG    G+LG G + +   P  VP++   P
Sbjct: 289 MELMGTEVSQIACGRNHTLAFVPSTGLIYAFGCNTQGQLGTGIRGSAKSP--VPVSNIQP 346

Query: 340 RNAGDGVDRR---WIAKLVACGGRHTLAIV 366
              G+   R     IAK +  GG H   ++
Sbjct: 347 LCIGNAYTRTEHCTIAK-IHSGGDHNFLLL 375



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + ++  WG    GQLG+ + ++R   C +K L   KV  +  G  ++ A+  +G   
Sbjct: 205 LSFSGAVFGWGKNSAGQLGLNDEQDRAVPCHIKFLRSQKVVYISCGEEHTAALTKEGGLF 264

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E +P +V  L  T++ Q A G  H LA V   G  YA+G N  
Sbjct: 265 TFGNGSKGQLGHDSTRNEPLPRRVMELMGTEVSQIACGRNHTLAFVPSTGLIYAFGCNTQ 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|55727310|emb|CAH90411.1| hypothetical protein [Pongo abelii]
          Length = 975

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE--EPERKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G   E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHVREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G +G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSYGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 164/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHVREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G +G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSYGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G +++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHVREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALASD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SYG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSYGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|350593460|ref|XP_003133446.3| PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Sus
            scrofa]
          Length = 4060

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 185/393 (47%), Gaps = 52/393 (13%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3180 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGYG 3239

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3240 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3299

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 3300 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 3351

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              D +    P  V  L+  +++ V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3352 HSDSEDQLKPKLVDALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 3411

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3412 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 3469

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ ++ ++ G  H V  T DG  +++G  D G+LG G    T   ++ P  + A 
Sbjct: 3470 VQGLQGKKVIAIATGSLHCVCCTEDGS-YTWGDNDEGQLGDG----TTNAIQRPRLVAAL 3524

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            +  G  V+R      VACG  HTLA   W T +
Sbjct: 3525 Q--GKKVNR------VACGSAHTLA---WSTSK 3546



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2206 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 2256

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 2257 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 2316

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2317 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 2376

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 2377 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2434

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2435 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 2483

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 2484 IVH-VAVGALHCLAVTD 2499



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 2238 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 2293

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 2294 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 2353

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 2354 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2398

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2399 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 2454

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 2455 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQ 2514

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2515 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 2550



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 134/313 (42%), Gaps = 65/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3281 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 3308

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 3309 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 3364

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 3365 DALQGHRVVDVAC---------GSGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 3411

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 3412 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 3471

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DG  Y WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 3472 GLQGKKVIAIATGSLHCVCCTEDGS-YTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 3528

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 3529 VNRVACGSAHTLA 3541



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3179 GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPVQLIGGEQTLFAVTADGKLYATGY 3238

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3239 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3298

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRLG+ 
Sbjct: 3299 GHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHS 3353



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2339 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2398

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2399 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2458

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2459 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 2510

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2511 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 2548


>gi|387928890|ref|ZP_10131567.1| regulator of chromosome condensation-like protein [Bacillus
           methanolicus PB1]
 gi|387585708|gb|EIJ78032.1| regulator of chromosome condensation-like protein [Bacillus
           methanolicus PB1]
          Length = 641

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/320 (33%), Positives = 152/320 (47%), Gaps = 32/320 (10%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG     N+P  VN  +N+  +   I  +H L+V   G   AWG N  GQ G+       
Sbjct: 16  DGTNIDSNVPVSVNGSTNSIAITGGI--FHSLSVLSDGLVCAWGANYSGQLGDGT----- 68

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
                  D  IP+         +VAAG  HS+ L     V  WG  +      G     +
Sbjct: 69  -----LNDSNIPEIVTALTNAIEVAAGVFHSLALLSNSTVRAWGDNFAGQLGDGTFNSST 123

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           VPV V GL     I+ G  H+LAL  DG + AWG N +GQLG G     + P+ + GLS 
Sbjct: 124 VPVSVIGLTNAIAISAGLNHSLALLNDGTVRAWGGNFFGQLGNGTDITSNAPVIILGLS- 182

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE----D 287
             +V ++AGG HS AL  DG V  WG    G+LG G N  + + +P +V  + G     +
Sbjct: 183 -NVVAVSAGGEHSLALLYDGTVCAWGANYSGQLGDGTN--TDRSIPVQVKGIGGSGVLNN 239

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++ +S G  HS+AL  DG + ++G  D+G+LG G    +  P++V          G GV 
Sbjct: 240 VIAISAGEFHSLALLNDGTVLAWGNNDYGQLGDGTNTESNVPVQV------KGTGGYGVL 293

Query: 348 RRWIAKLVACGGRHTLAIVE 367
               A  +A GG H+LA++ 
Sbjct: 294 NNVAA--IAAGGFHSLALLN 311



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 154/328 (46%), Gaps = 58/328 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           + AWG+   GQLG G   +     +V AL       V AG  +SLA+             
Sbjct: 53  VCAWGANYSGQLGDGTLNDSNIPEIVTALT--NAIEVAAGVFHSLALLSNSTVRAWGDNF 110

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG   +  +P  V  L+N   + A +   H LA+ + G   AWGGN +GQ G   
Sbjct: 111 AGQLGDGTFNSSTVPVSVIGLTNAIAISAGLN--HSLALLNDGTVRAWGGNFFGQLGNGT 168

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP-- 163
           +   +               AP +I     V  V+AGG HS+ L  +G V  WG  +   
Sbjct: 169 DITSN---------------APVIILGLSNVVAVSAGGEHSLALLYDGTVCAWGANYSGQ 213

Query: 164 --PGDIKQISVPVRVQG------LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
              G     S+PV+V+G      L  V  I+ G FH+LAL  DG + AWGNN+YGQLG G
Sbjct: 214 LGDGTNTDRSIPVQVKGIGGSGVLNNVIAISAGEFHSLALLNDGTVLAWGNNDYGQLGDG 273

Query: 216 DTQPRSQPIPVQGLSGLTLVD----IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
                + P+ V+G  G  +++    IAAGG+HS AL +DG V  WG  E G+LG G N  
Sbjct: 274 TNTESNVPVQVKGTGGYGVLNNVAAIAAGGFHSLALLNDGTVLAWGNNESGQLGDGSNSD 333

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           S   +P  V+ L   +   ++ GG HS+
Sbjct: 334 SD--IPVTVSGLTNSN--TIAGGGDHSL 357



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 175/399 (43%), Gaps = 80/399 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           +  +WG+ E GQLG G N +              V   V GS NS+AI            
Sbjct: 2   TTFSWGNNEFGQLGDGTNIDS------------NVPVSVNGSTNSIAITGGIFHSLSVLS 49

Query: 54  --------------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
                           DG     NIP  V AL+N   ++ A G +H LA+       AWG
Sbjct: 50  DGLVCAWGANYSGQLGDGTLNDSNIPEIVTALTNA--IEVAAGVFHSLALLSNSTVRAWG 107

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            N  GQ G+                 +P           ++AG  HS+ L  +G V  WG
Sbjct: 108 DNFAGQLGDGTFNSS----------TVPVSVIGLTNAIAISAGLNHSLALLNDGTVRAWG 157

Query: 160 -----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                Q     DI   + PV + GL  V  ++ G  H+LAL  DG + AWG N  GQLG 
Sbjct: 158 GNFFGQLGNGTDITS-NAPVIILGLSNVVAVSAGGEHSLALLYDGTVCAWGANYSGQLGD 216

Query: 215 GDTQPRSQPIPVQGLSGL----TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           G    RS P+ V+G+ G      ++ I+AG +HS AL +DG V  WG  ++G+LG G N 
Sbjct: 217 GTNTDRSIPVQVKGIGGSGVLNNVIAISAGEFHSLALLNDGTVLAWGNNDYGQLGDGTNT 276

Query: 271 KSSKMVPQKVNLLAG----EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           +S+  VP +V    G     ++  ++ GG HS+AL  DG + ++G  + G+LG G    +
Sbjct: 277 ESN--VPVQVKGTGGYGVLNNVAAIAAGGFHSLALLNDGTVLAWGNNESGQLGDGSNSDS 334

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
               ++P+ +    N          +  +A GG H+L I
Sbjct: 335 ----DIPVTVSGLTN----------SNTIAGGGDHSLDI 359



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 20/166 (12%)

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           ++WGNNE+GQLG G     + P+ V G +    + I  G +HS ++  DG V  WG    
Sbjct: 4   FSWGNNEFGQLGDGTNIDSNVPVSVNGST--NSIAITGGIFHSLSVLSDGLVCAWGANYS 61

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G+LG G  + S+  +P+ V  L   + ++V+ G  HS+AL  +  + ++G    G+LG G
Sbjct: 62  GQLGDGTLNDSN--IPEIVTALT--NAIEVAAGVFHSLALLSNSTVRAWGDNFAGQLGDG 117

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               T     VP+++    NA        IA  ++ G  H+LA++ 
Sbjct: 118 ----TFNSSTVPVSVIGLTNA--------IA--ISAGLNHSLALLN 149



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 91/221 (41%), Gaps = 48/221 (21%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           AWG    GQLG G +       ++  L    V +V AG  +SLA+  DG           
Sbjct: 155 AWGGNFFGQLGNGTDITSNAPVIILGLS--NVVAVSAGGEHSLALLYDGTVCAWGANYSG 212

Query: 59  -----TKTE-NIPSQVNALSNTKIVQAAI----GGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                T T+ +IP QV  +  + ++   I    G +H LA+ + G   AWG N+YGQ G+
Sbjct: 213 QLGDGTNTDRSIPVQVKGIGGSGVLNNVIAISAGEFHSLALLNDGTVLAWGNNDYGQLGD 272

Query: 109 -------EPERKDDTGR--ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
                   P +   TG   +L               V  +AAGG HS+ L  +G V  WG
Sbjct: 273 GTNTESNVPVQVKGTGGYGVLNN-------------VAAIAAGGFHSLALLNDGTVLAWG 319

Query: 160 Q----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
                    G      +PV V GL     IA G  H+L +Q
Sbjct: 320 NNESGQLGDGSNSDSDIPVTVSGLTNSNTIAGGGDHSLDIQ 360


>gi|156372872|ref|XP_001629259.1| predicted protein [Nematostella vectensis]
 gi|156216255|gb|EDO37196.1| predicted protein [Nematostella vectensis]
          Length = 4220

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 182/388 (46%), Gaps = 49/388 (12%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
            +  WG  +  QLG     + +   + + +   KV+ +  GS+   A+  DGK        
Sbjct: 2423 VFVWGLNDKDQLGGLKGSKIKVPVLSEFIGALKVQQIAGGSKTLFAVSHDGKVFACGEST 2482

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     +    +P Q+  LS+  + + ++  GG H +A+  +G+ ++WG  E G+ G
Sbjct: 2483 NGRLGLGPLSANVTVPRQIENLSSFMVRKVSVHSGGRHAMALTIEGKLFSWGEGEDGKLG 2542

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  +++         C     VR ++ G +HS  +   G ++TWG        
Sbjct: 2543 HGNRMNCDHPKLID---TFKSSC-----VRDMSCGSSHSAAILSSGELYTWGLGEYGRLG 2594

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P +VQ     ++I +         LAL +DG +W+WG+ ++G+LG G ++ 
Sbjct: 2595 HGDNYTHLKPKKVQSFTSHRVIDIACGSRDAQTLALTDDGTVWSWGDGDFGKLGRGGSEG 2654

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             S P PV+ L G  +  +A G   S AL+  G V+ WG+G++ RLG G++    K  PQ 
Sbjct: 2655 CSVPNPVEKLQGQGVCKVACGAQFSLALSTSGLVWTWGKGDYYRLGHGNDTHVRK--PQI 2712

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V+ L G+ IV V+ G  H +A+T  G +F++G  DHG+ G        +P  V       
Sbjct: 2713 VDGLRGKKIVDVAVGALHCLAVTDSGQVFAWGDNDHGQQGNNTTTVNRRPQLV------- 2765

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +G++ + I + VACG  H++A  E
Sbjct: 2766 ----NGLEGQKITR-VACGSSHSIAWAE 2788



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 176/394 (44%), Gaps = 57/394 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +    ++AL   +   +V G +   A+  +GK       
Sbjct: 3355 TIYGWGHNHRGQLGSLEGAKVKLPQTIEALASIRPVQIVGGEQTLFAVTAEGKVYATGYG 3414

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T T      + +L +  + + A+  GG H +A+   G  Y+WG  + G+ G
Sbjct: 3415 HGGRLGLGGTDTVTSIKMLESLQHVVVRKVAVHSGGKHAMALSADGDVYSWGEGDDGKLG 3474

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  R+   LR   VI   C           GG+HS  +T+   ++TWG+    
Sbjct: 3475 HGNRNSCDRPRVIEALRGKGVIDISC-----------GGSHSACITQNHELYTWGKGRYG 3523

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                GD +   +P  V+ L   ++I V    G    L L +D  +W+WG+ +YG+LG G 
Sbjct: 3524 RLGHGDSEDQLLPKVVEALRGNRVIDVACGSGDAQTLCLTDDDCVWSWGDGDYGKLGRGG 3583

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P+ V+ L GL +  +  G   S ALT  G VY WG+G++ RLG G +D   +  
Sbjct: 3584 SDGCKIPMKVESLIGLGVSKVECGSQFSVALTRSGAVYTWGKGDYYRLGHGVDDHVRR-- 3641

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P++V  L G+ ++ ++ G  H VA T  G ++++G  D G+LG G      +P  V    
Sbjct: 3642 PKRVAALQGKKVITIATGSLHCVASTDTGEVYTWGDNDEGQLGDGTTNAIARPRLVTA-- 3699

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
                  G  + R      VACG  HT+A   W T
Sbjct: 3700 ----LQGKKISR------VACGSAHTIA---WST 3720



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 137/266 (51%), Gaps = 21/266 (7%)

Query: 65  PSQVNALS-NTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
           P+++  LS   +IVQ      G H LA+  +G  Y+WG  + G+ G       DT    R
Sbjct: 5   PAELECLSRKCEIVQVVTHTDGKHFLALTREGEVYSWGSGDGGKLGH-----GDTSP--R 57

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
            +  +    A K ++R ++ G THS  +T EG ++TWG+        G  +   VPV V 
Sbjct: 58  EEPTLVTGLAGKQVIR-ISCGSTHSAAVTSEGELYTWGRGNYGRLGHGSSEDQLVPVLVS 116

Query: 178 GLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           GL    +I V    G  H LA  +DG +W+WG+ +YG+LG G +     P  ++ L GL 
Sbjct: 117 GLRGHHIIDVACGSGDAHTLAAADDGTVWSWGDGDYGKLGRGGSDGCKNPKSIERLQGLG 176

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  +  G   S ALT DG V+ WG+GE  RLG G  D      P+ V  L G+ +V VS 
Sbjct: 177 VCKVYCGAQFSLALTRDGSVWTWGKGEGFRLGHGTEDHVRH--PKLVEALDGKHVVDVSV 234

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLG 319
           G  H +ALT  G ++ +GR D G+LG
Sbjct: 235 GSIHCLALTDAGEVYCWGRNDQGQLG 260



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 22/233 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQ 196
           G H + LTREG V++WG         GD      P  V GL  +QV  I+ G+ H+ A+ 
Sbjct: 26  GKHFLALTREGEVYSWGSGDGGKLGHGDTSPREEPTLVTGLAGKQVIRISCGSTHSAAVT 85

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG--WHSTALTDDGEVY 254
            +G L+ WG   YG+LG G ++ +  P+ V GL G  ++D+A G    H+ A  DDG V+
Sbjct: 86  SEGELYTWGRGNYGRLGHGSSEDQLVPVLVSGLRGHHIIDVACGSGDAHTLAAADDGTVW 145

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG G++G+LG G +D      P+ +  L G  + +V CG   S+ALTRDG ++++G+G+
Sbjct: 146 SWGDGDYGKLGRGGSDGCKN--PKSIERLQGLGVCKVYCGAQFSLALTRDGSVWTWGKGE 203

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             RLG+G +     P  V           + +D + +   V+ G  H LA+ +
Sbjct: 204 GFRLGHGTEDHVRHPKLV-----------EALDGKHVVD-VSVGSIHCLALTD 244



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 129/308 (41%), Gaps = 66/308 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WGSG+ G+LG G+   RE                                     P+
Sbjct: 38  VYSWGSGDGGKLGHGDTSPREE------------------------------------PT 61

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI---LRRD 123
            V  L+  ++++ + G  H  AV  +G  Y WG   YG+ G           +   LR  
Sbjct: 62  LVTGLAGKQVIRISCGSTHSAAVTSEGELYTWGRGNYGRLGHGSSEDQLVPVLVSGLRGH 121

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD-----------IKQISV 172
            +I   C          +G  H++    +G VW+WG     GD            K    
Sbjct: 122 HIIDVACG---------SGDAHTLAAADDGTVWSWGD----GDYGKLGRGGSDGCKNPKS 168

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             R+QGL   K +  GA  +LAL  DG++W WG  E  +LG G       P  V+ L G 
Sbjct: 169 IERLQGLGVCK-VYCGAQFSLALTRDGSVWTWGKGEGFRLGHGTEDHVRHPKLVEALDGK 227

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +VD++ G  H  ALTD GEVY WGR + G+L  GD D   +  P  V+ LA + IV ++
Sbjct: 228 HVVDVSVGSIHCLALTDAGEVYCWGRNDQGQL--GDIDCQIRPEPTLVSGLASKGIVGIA 285

Query: 293 CGGTHSVA 300
           CG   S A
Sbjct: 286 CGPAQSFA 293



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 122/276 (44%), Gaps = 44/276 (15%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
            +++   + +WG G+DG+LG GN    +   V++AL    V  +  G  +S  I  +    
Sbjct: 3456 LSADGDVYSWGEGDDGKLGHGNRNSCDRPRVIEALRGKGVIDISCGGSHSACITQNHELY 3515

Query: 57   ------------GKTKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
                        G ++ + +P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 3516 TWGKGRYGRLGHGDSEDQLLPKVVEALRGNRVIDVACGSGDAQTLCLTDDDCVWSWGDGD 3575

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            YG+ G    R    G        IP +      L V +V  G   SV LTR G V+TWG+
Sbjct: 3576 YGKLG----RGGSDG------CKIPMKVESLIGLGVSKVECGSQFSVALTRSGAVYTWGK 3625

Query: 161  PWPPGDI--------KQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                GD           +  P RV  L+  +V  IA G+ H +A  + G ++ WG+N+ G
Sbjct: 3626 ----GDYYRLGHGVDDHVRRPKRVAALQGKKVITIATGSLHCVASTDTGEVYTWGDNDEG 3681

Query: 211  QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            QLG G T   ++P  V  L G  +  +A G  H+ A
Sbjct: 3682 QLGDGTTNAIARPRLVTALQGKKISRVACGSAHTIA 3717



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 105/252 (41%), Gaps = 48/252 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   +  WG G  G+LG G++E++    +V  L  + +  V  GS             
Sbjct: 84  VTSEGELYTWGRGNYGRLGHGSSEDQLVPVLVSGLRGHHIIDVACGS------------- 130

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                G  H LA  D G  ++WG  +YG+ G          + +
Sbjct: 131 ---------------------GDAHTLAAADDGTVWSWGDGDYGKLGRGGSDGCKNPKSI 169

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
            R           L V +V  G   S+ LTR+G VWTWG+        G    +  P  V
Sbjct: 170 ER--------LQGLGVCKVYCGAQFSLALTRDGSVWTWGKGEGFRLGHGTEDHVRHPKLV 221

Query: 177 QGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           + L+   V  ++VG+ H LAL + G ++ WG N+ GQLG  D Q R +P  V GL+   +
Sbjct: 222 EALDGKHVVDVSVGSIHCLALTDAGEVYCWGRNDQGQLGDIDCQIRPEPTLVSGLASKGI 281

Query: 235 VDIAAGGWHSTA 246
           V IA G   S A
Sbjct: 282 VGIACGPAQSFA 293



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            G ++ WG+N  GQLG+ +      P  ++ L+ +  V I  G     A+T +G+VY  G 
Sbjct: 3354 GTIYGWGHNHRGQLGSLEGAKVKLPQTIEALASIRPVQIVGGEQTLFAVTAEGKVYATGY 3413

Query: 259  GEHGRLGFGDND--KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D   S KM+    +++  +  V V  GG H++AL+ DG ++S+G GD G
Sbjct: 3414 GHGGRLGLGGTDTVTSIKMLESLQHVVVRK--VAVHSGGKHAMALSADGDVYSWGEGDDG 3471

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +LG+G + +  +P      I A R  G  +D       ++CGG H+  I +
Sbjct: 3472 KLGHGNRNSCDRPR----VIEALRGKG-VID-------ISCGGSHSACITQ 3510



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 72/264 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N        V++   ++V  +  GSR+  +LA+ DDG 
Sbjct: 2576 ILSSGELYTWGLGEYGRLGHGDNYTHLKPKKVQSFTSHRVIDIACGSRDAQTLALTDDGT 2635

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  ++P+ V  L    + + A G    LA+   G  + WG  +
Sbjct: 2636 VWSWGDGDFGKLGRGGSEGCSVPNPVEKLQGQGVCKVACGAQFSLALSTSGLVWTWGKGD 2695

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G      +DT   +R+  ++      K++   VA G  H + +T  G V+ W    
Sbjct: 2696 YYRLGH----GNDTH--VRKPQIVDGLRGKKIV--DVAVGALHCLAVTDSGQVFAW---- 2743

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                      G+N++GQ G   T    +
Sbjct: 2744 ------------------------------------------GDNDHGQQGNNTTTVNRR 2761

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTA 246
            P  V GL G  +  +A G  HS A
Sbjct: 2762 PQLVNGLEGQKITRVACGSSHSIA 2785



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 252  EVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            +V+ WG  +  +LG     K SK+ VP     +    + Q++ G     A++ DG +F+ 
Sbjct: 2422 KVFVWGLNDKDQLG---GLKGSKIKVPVLSEFIGALKVQQIAGGSKTLFAVSHDGKVFAC 2478

Query: 311  GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G   +GRLG G       P+   + +P           R ++  V  GGRH +A+
Sbjct: 2479 GESTNGRLGLG-------PLSANVTVPRQIENLSSFMVRKVS--VHSGGRHAMAL 2524


>gi|348575702|ref|XP_003473627.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cavia
           porcellus]
          Length = 1080

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 178/383 (46%), Gaps = 73/383 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP--------YKVRSVVAGSRNSLAICDDGK 58
           ++ WG+   GQLG+G  +E         LEP         KVR V  G R+++ + DDG 
Sbjct: 1   MLCWGNASFGQLGLGGIDEE------IVLEPRKSDFFINKKVRDVGCGLRHTVFVLDDGT 54

Query: 59  T--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          K+   P QV AL    IV  + G  H LA++D+G+ YAWG +  G
Sbjct: 55  VYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDG 114

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G      ++  R+ R+ I +P      + +++     +      R+  V T      P
Sbjct: 115 QLGLL--GSEECIRVPRKSIFMP--VDKNIRIKECKKTAS------RKSWVSTLCSELAP 164

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQP 223
                         L +   +AV A           ++ WG N+YGQLG G D + ++ P
Sbjct: 165 D-----------SHLAESGQVAVSA---------SEVFCWGQNKYGQLGLGIDCKKQTSP 204

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             ++ L G+  + +AAGG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L
Sbjct: 205 QLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPYLLKSL 262

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
             + IV + CG  H+ ALT++G +F+FG G +G+LG+    +T   +        PR   
Sbjct: 263 RSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVF 312

Query: 344 DGVDRRWIAKLVACGGRHTLAIV 366
           + +    I   +ACG +HT A V
Sbjct: 313 ELMGS--IVTQIACGRQHTSAFV 333



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 90/235 (38%), Gaps = 52/235 (22%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT 61
            S + +  WG  + GQLG+G +                                    K 
Sbjct: 176 VSASEVFCWGQNKYGQLGLGID-----------------------------------CKK 200

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
           +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L+
Sbjct: 201 QTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPYLLK 260

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRV 176
              +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +V
Sbjct: 261 S--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRKV 311

Query: 177 QGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 312 FELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 366


>gi|344284757|ref|XP_003414131.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Loxodonta
           africana]
          Length = 1050

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             + AGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVTAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT++G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKNGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +  G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVTAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT +G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKNGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVTAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q   GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVTAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKNGGVFTFGAG-SCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +  +G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKNGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|291401438|ref|XP_002717008.1| PREDICTED: hect domain and RLD 3 [Oryctolagus cuniculus]
          Length = 1504

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +++  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 479 PQVCGFIADRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 538

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 539 HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 586

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 587 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPL 646

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 647 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 703

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 704 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 744

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 745 LMGSEVTQIACGRQHTLAFV 764



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 43/356 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT 61
           +++ WG    GQ GI +N +       VC   A     V+ V  G  +S+ + +DG+  T
Sbjct: 454 TMLCWGYWSLGQPGISSNLQGIVAEPQVCGFIA--DRSVKEVACGGNHSVFLLEDGEVYT 511

Query: 62  E--------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                          N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ  
Sbjct: 512 CGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ-- 569

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----- 159
                    G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     
Sbjct: 570 --------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHG 621

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           Q     +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D 
Sbjct: 622 QLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDE 681

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P
Sbjct: 682 KDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNP 739

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 740 RRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 795



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 490 VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIVHVACGESH 549

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 550 SLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 609

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 610 GQFFTWGKNSHGQLGLG-KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 668

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 669 GMNNAGQLGLSDEKDRESPCHVKL------------LRTQKVVYISCGEEHTAVLTK 713



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 113/251 (45%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 559 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 618

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 619 SHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 678

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+            ++ G  H+ VLT+ G V+T+G     G
Sbjct: 679 SDEKDRESPCHVKLLRTQKVV-----------YISCGEEHTAVLTKSGGVFTFGA-GSCG 726

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 727 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 786

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 787 CNVKCPSPVKG 797


>gi|431911479|gb|ELK13685.1| Putative E3 ubiquitin-protein ligase HERC6 [Pteropus alecto]
          Length = 1010

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 149/302 (49%), Gaps = 32/302 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE-PERKDDTGRILRRDIVIPQRCAPK 133
           ++ QAA G  H L +   G  ++ G N  GQ G     R++  G I         +    
Sbjct: 22  EVRQAACGERHSLLLLSDGTVHSCGDNTQGQLGRRGKPREERPGLI---------KALET 72

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAV- 187
           L+V  V+ G  HS+ +  +G V+ WG     Q       ++I  P +++ L  +K+I V 
Sbjct: 73  LLVGLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIEECKEKIFTPKKIKTLTGIKIIQVS 132

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHST 245
            G +H+LAL EDG +++WG N  GQLG G   P ++ P  V+ L G+ L  +AAGG HS 
Sbjct: 133 CGHYHSLALSEDGQVYSWGKNSQGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSF 192

Query: 246 ALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           AL+  G  +GWG    G+L   G+N    +  P  +  L   D++ +SCG  H+  LT++
Sbjct: 193 ALSLSGTSFGWGSNNTGQLALSGNNTPVQRYKPHSIGALKSLDVIYISCGYEHTAVLTQN 252

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G +F+FG    G+LGY        P +V           +G+D   +   + CG  HTLA
Sbjct: 253 GKVFTFGDNSCGQLGYNPTAKKRGPQQV-----------EGID--GLVSQIDCGSYHTLA 299

Query: 365 IV 366
            V
Sbjct: 300 YV 301



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 146/303 (48%), Gaps = 39/303 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKT----------------ENIPSQVNALSNTKIVQAAIG 82
           +VR    G R+SL +  DG   +                E  P  + AL    +   + G
Sbjct: 22  EVRQAACGERHSLLLLSDGTVHSCGDNTQGQLGRRGKPREERPGLIKALETLLVGLVSCG 81

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCG-EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
             H LAV  +GR +AWG    GQ G EE + K  T + ++    I      K+I  QV+ 
Sbjct: 82  KEHSLAVCHKGRVFAWGAGSEGQLGIEECKEKIFTPKKIKTLTGI------KII--QVSC 133

Query: 142 GGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLA 194
           G  HS+ L+ +G V++W     GQ     +    + P RV+ LE + L  +A G  H+ A
Sbjct: 134 GHYHSLALSEDGQVYSWGKNSQGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 193

Query: 195 LQEDGALWAWGNNEYGQLG-TGDTQP--RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           L   G  + WG+N  GQL  +G+  P  R +P  +  L  L ++ I+ G  H+  LT +G
Sbjct: 194 LSLSGTSFGWGSNNTGQLALSGNNTPVQRYKPHSIGALKSLDVIYISCGYEHTAVLTQNG 253

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA-LTRDGHIFSF 310
           +V+ +G    G+LG+  N  + K  PQ+V  + G  + Q+ CG  H++A +   G + SF
Sbjct: 254 KVFTFGDNSCGQLGY--NPTAKKRGPQQVEGIDGL-VSQIDCGSYHTLAYVYTTGEVVSF 310

Query: 311 GRG 313
           GRG
Sbjct: 311 GRG 313



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 57/299 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ + G    GQLG       E   ++KALE   V  V  G  +SLA+C  G+  
Sbjct: 36  LLSDGTVHSCGDNTQGQLGRRGKPREERPGLIKALETLLVGLVSCGKEHSLAVCHKGRVF 95

Query: 61  T---------------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           E I  P ++  L+  KI+Q + G +H LA+ + G+ Y+WG N  
Sbjct: 96  AWGAGSEGQLGIEECKEKIFTPKKIKTLTGIKIIQVSCGHYHSLALSEDGQVYSWGKNSQ 155

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 156 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSF 201

Query: 157 TWGQPWPPGDIKQISV-----------PVRVQGLEQVKLIAV--GAFHNLALQEDGALWA 203
            WG      +  Q+++           P  +  L+ + +I +  G  H   L ++G ++ 
Sbjct: 202 GWGS----NNTGQLALSGNNTPVQRYKPHSIGALKSLDVIYISCGYEHTAVLTQNGKVFT 257

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEH 261
           +G+N  GQLG   T  +  P  V+G+ GL +  I  G +H+ A +   GEV  +GRG +
Sbjct: 258 FGDNSCGQLGYNPTAKKRGPQQVEGIDGL-VSQIDCGSYHTLAYVYTTGEVVSFGRGRN 315


>gi|380018521|ref|XP_003693176.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis
           florea]
          Length = 1081

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 192/406 (47%), Gaps = 53/406 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAIC--------- 54
           +  WGS   G+LG+G  E+ E + + + L+  K   ++ +  G   ++ I          
Sbjct: 28  MFCWGSTIHGELGLGGIED-ENILIPRELDFKKAAEIQQIACGENYTVVITQIGEIYSCG 86

Query: 55  ---------DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                    + G+ + + IP     L      +AA G +H LA+++ G+ ++WG N  GQ
Sbjct: 87  NNDYGQLGHEKGRKRLQLIP----GLDAFVFKKAACGAYHTLAINEWGQLFSWGSNTEGQ 142

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
            G   +   ++   + + +          +V Q+A G  H+  LT  G +++WG     Q
Sbjct: 143 LGLNSKNFMESSPRMVKTLGTS-------VVVQIACGMKHAFALTNNGELYSWGSNSEGQ 195

Query: 161 PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                DIK    P  +       +  IA G +H++A+ + GA++ WG N +GQLG  DTQ
Sbjct: 196 LGLGTDIKYEIKPKFISAFIGIPIAFIACGGYHSIAISKSGAVFGWGKNTFGQLGLNDTQ 255

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P  +Q L    +   A G   S  LT DG V+  G G +G+LG G N  S++++P+
Sbjct: 256 DRNLPCQLQTLQNAKICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSN--SNEILPR 313

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG--YGRKVTTGQPMEVPIN 335
           +V  L G  + Q+SCG  H++AL    G ++++G G  G+LG    R VTT Q +  P  
Sbjct: 314 QVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNHSTRSVTTPQVVHGPWI 373

Query: 336 IPAPRNAGDGVDRR-------WIAKLVACGGRHTLAIVEWQTEESK 374
            P      D V+++       +I K +  GG H  A V  Q +  K
Sbjct: 374 APNGSTIMD-VNKQFNSRTIGYIVKHIFTGGDHCFATVISQNDIVK 418



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 18/124 (14%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           L    +++ WG   HG LG G  +  + ++P++++     +I Q++CG  ++V +T+ G 
Sbjct: 22  LHKKKDMFCWGSTIHGELGLGGIEDENILIPRELDFKKAAEIQQIACGENYTVVITQIGE 81

Query: 307 IFSFGRGDHGRLGY--GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           I+S G  D+G+LG+  GRK     P               G+D  ++ K  ACG  HTLA
Sbjct: 82  IYSCGNNDYGQLGHEKGRKRLQLIP---------------GLD-AFVFKKAACGAYHTLA 125

Query: 365 IVEW 368
           I EW
Sbjct: 126 INEW 129



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 17/138 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++R   C ++ L+  K+     G   S+ +  DG   
Sbjct: 232 ISKSGAVFGWGKNTFGQLGLNDTQDRNLPCQLQTLQNAKICYAACGEEFSVFLTVDGGVF 291

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P QV  L  + + Q + G  H LA V  +GR YAWG    
Sbjct: 292 TCGAGMYGQLGHGSNSNEILPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGA 351

Query: 104 GQCGEEPERKDDTGRILR 121
           GQ G    R   T +++ 
Sbjct: 352 GQLGNHSTRSVTTPQVVH 369


>gi|328704352|ref|XP_003242465.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           2 [Acyrthosiphon pisum]
          Length = 893

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 185/385 (48%), Gaps = 45/385 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVC---VVKALEPYKVRSVVAGSRNSLAICDDG----- 57
           ++  WG+  +G+LG+G  EE   +    +V       ++SV  G+ ++LA+ +DG     
Sbjct: 19  TMYCWGNTINGELGLGGIEENYILSPEEIVNFESVNNIKSVACGNNHTLAVTEDGQLYAC 78

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        +TK + IP  V +L  T +   A G  H +A+++ G+ Y WG +  G
Sbjct: 79  GSNDFGQLGHDGCRTKLQKIPG-VESLVMTSV---ACGEAHSMALNEWGQLYTWGSDSCG 134

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G E     D G   +  IV   +    +++ Q++ G  H + LT  G ++TWG     
Sbjct: 135 QLGLET----DEGIQYKPKIV---KTLASMLLVQISCGYKHCMALTNHGELYTWGSNEFG 187

Query: 161 -PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                     +S P  V  L    +  IA G +H+  + + GA++ WG N++GQLG    
Sbjct: 188 QLGLGLGPGNVSKPTLVNSLVGLPISFIACGGYHSFVVSKSGAVFGWGKNDFGQLGINSQ 247

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              S P  ++ +  + +  IA G   S  LT DG V+  G G +G+LG G    S+++VP
Sbjct: 248 TSLSSPAQLKTIRTVKVKYIAGGEDFSVFLTYDGGVFTCGAGMYGQLGHG--SFSNEIVP 305

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV--PI 334
           +KV  L G  + QV+CG  H++ L    G ++SFG G  G+LG    + +  P  V  P 
Sbjct: 306 RKVLELMGSTVTQVTCGRRHTLTLVPSKGRVYSFGLGSVGQLGTKSSINSNTPQLVLGPW 365

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGG 359
             P+  +  +  +++++ K +  GG
Sbjct: 366 LSPSGTSMIE-TNKQYVVKSIYAGG 389



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 149/314 (47%), Gaps = 46/314 (14%)

Query: 68  VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP 127
           VN  S   I   A G  H LAV + G+ YA G N++GQ G +  R       L++   IP
Sbjct: 48  VNFESVNNIKSVACGNNHTLAVTEDGQLYACGSNDFGQLGHDGCRTK-----LQK---IP 99

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISVP 173
                 L++  VA G  HS+ L   G ++TWG                + P  +K ++  
Sbjct: 100 G--VESLVMTSVACGEAHSMALNEWGQLYTWGSDSCGQLGLETDEGIQYKPKIVKTLASM 157

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGL 232
           + VQ       I+ G  H +AL   G L+ WG+NE+GQLG G      S+P  V  L GL
Sbjct: 158 LLVQ-------ISCGYKHCMALTNHGELYTWGSNEFGQLGLGLGPGNVSKPTLVNSLVGL 210

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  IA GG+HS  ++  G V+GWG+ + G+LG   N ++S   P ++  +    +  ++
Sbjct: 211 PISFIACGGYHSFVVSKSGAVFGWGKNDFGQLGI--NSQTSLSSPAQLKTIRTVKVKYIA 268

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G   SV LT DG +F+ G G +G+LG+G       P +V          G  V +    
Sbjct: 269 GGEDFSVFLTYDGGVFTCGAGMYGQLGHGSFSNEIVPRKVL------ELMGSTVTQ---- 318

Query: 353 KLVACGGRHTLAIV 366
             V CG RHTL +V
Sbjct: 319 --VTCGRRHTLTLV 330



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 15/117 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQK-VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           +Y WG   +G LG G  +++  + P++ VN  +  +I  V+CG  H++A+T DG +++ G
Sbjct: 20  MYCWGNTINGELGLGGIEENYILSPEEIVNFESVNNIKSVACGNNHTLAVTEDGQLYACG 79

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D G+LG+    T  Q  ++P           GV+   +   VACG  H++A+ EW
Sbjct: 80  SNDFGQLGHDGCRTKLQ--KIP-----------GVESLVMTS-VACGEAHSMALNEW 122



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG  + GQLGI +         +K +   KV+ +  G   S+ +  DG   T    
Sbjct: 230 AVFGWGKNDFGQLGINSQTSLSSPAQLKTIRTVKVKYIAGGEDFSVFLTYDGGVFTCGAG 289

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E +P +V  L  + + Q   G  H L  V  +GR Y++G    GQ G 
Sbjct: 290 MYGQLGHGSFSNEIVPRKVLELMGSTVTQVTCGRRHTLTLVPSKGRVYSFGLGSVGQLGT 349

Query: 109 EPERKDDTGRILRRDIVIPQ-----RCAPKLIVRQVAAGGTHSVV 148
           +     +T +++    + P          + +V+ + AGG    V
Sbjct: 350 KSSINSNTPQLVLGPWLSPSGTSMIETNKQYVVKSIYAGGDQCFV 394


>gi|170062906|ref|XP_001866871.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
 gi|167880719|gb|EDS44102.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
          Length = 679

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 171/371 (46%), Gaps = 67/371 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++  WGS   G+LG+G  EE + +                                   P
Sbjct: 2   ALYCWGSTVHGELGLGGIEEEQVM----------------------------------TP 27

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            +++      + QAA GG H L +   G+ Y  G N++GQ G       DT  +  +   
Sbjct: 28  REMDWSQAANVQQAACGGSHTLLLTKDGKLYTCGNNDHGQLGH------DTNNLPNKR-- 79

Query: 126 IPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---GDIKQISVP----VRV 176
            PQ  +     IV QV+ G +HS+ LT  G +++WG         D+  +S P    ++ 
Sbjct: 80  -PQFISALENYIVTQVSCGLSHSLALTNWGQLFSWGSNATGQLGHDLDMVSYPAPRMIKS 138

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLV 235
              + V  I+ G  H LAL   G L+AWG NEYGQLG G T  +      V+ L+G+ + 
Sbjct: 139 IATKTVVQISCGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAGIPIA 198

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA GG HS A++  G ++GWG+   G+LG   ND  S+  P ++  L    +  +SCG 
Sbjct: 199 FIACGGNHSFAVSKSGAIFGWGKNTFGQLGL--NDLDSRCYPTQLKTLRSLGVRYISCGD 256

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
             SV LT++G +F+ G G  G+LG+G   T G  +        PR   + +  +     +
Sbjct: 257 DFSVFLTQEGGVFTCGLGTFGQLGHG---THGNEI-------LPRMVFELMGSKITQ--I 304

Query: 356 ACGGRHTLAIV 366
           ACG +HTLA V
Sbjct: 305 ACGRKHTLAFV 315



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 104/256 (40%), Gaps = 51/256 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WGS   GQLG                                    D    +   P 
Sbjct: 110 LFSWGSNATGQLG-----------------------------------HDLDMVSYPAPR 134

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIV 125
            + +++   +VQ + G  HCLA+ + G  +AWG NEYGQ G     +K  T  +++    
Sbjct: 135 MIKSIATKTVVQISCGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAG 194

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ 181
           IP        +  +A GG HS  +++ G ++ WG+         D+     P +++ L  
Sbjct: 195 IP--------IAFIACGGNHSFAVSKSGAIFGWGKNTFGQLGLNDLDSRCYPTQLKTLRS 246

Query: 182 --VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
             V+ I+ G   ++ L ++G ++  G   +GQLG G       P  V  L G  +  IA 
Sbjct: 247 LGVRYISCGDDFSVFLTQEGGVFTCGLGTFGQLGHGTHGNEILPRMVFELMGSKITQIAC 306

Query: 240 GGWHSTALTDD-GEVY 254
           G  H+ A     G+VY
Sbjct: 307 GRKHTLAFVPSRGKVY 322



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG   HG LG G  ++   M P++++     ++ Q +CGG+H++ LT+DG +++ G 
Sbjct: 3   LYCWGSTVHGELGLGGIEEEQVMTPREMDWSQAANVQQAACGGSHTLLLTKDGKLYTCGN 62

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            DHG+LG+    T   P + P  I A  N        +I   V+CG  H+LA+  W
Sbjct: 63  NDHGQLGHD---TNNLPNKRPQFISALEN--------YIVTQVSCGLSHSLALTNW 107



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +I  WG    GQLG+ + + R +   +K L    VR +  G   S+ +  +G   T    
Sbjct: 215 AIFGWGKNTFGQLGLNDLDSRCYPTQLKTLRSLGVRYISCGDDFSVFLTQEGGVFTCGLG 274

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAY 96
                       E +P  V  L  +KI Q A G  H LA V  +G+ Y
Sbjct: 275 TFGQLGHGTHGNEILPRMVFELMGSKITQIACGRKHTLAFVPSRGKVY 322


>gi|219847608|ref|YP_002462041.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
           9485]
 gi|219541867|gb|ACL23605.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
           DSM 9485]
          Length = 778

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 161/355 (45%), Gaps = 39/355 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S+  ++ WG    GQLG G    R     V  L P  V ++ AG  ++ A+   G+  
Sbjct: 170 LMSSGGVMCWGDNYYGQLGDGTTTNRRTPVAVSGL-PSGVTAIAAGGLHTCALTGSGEVW 228

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          T + + P+ V  L +  +   A GG H  A+   G  + WG N+ 
Sbjct: 229 CWGYNYYGQLGDGTTTYSRSTPAAVGGLPS-GMTAIAAGGLHTCALMSSGGVWCWGRNDS 287

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           GQ G+  +    T   +     +P        V  +AAG  H+  LT  G VW WG    
Sbjct: 288 GQLGDGSDTDSSTPVAVSG---LPSG------VTAIAAGDYHTCALTGSGEVWCWGGNGF 338

Query: 161 -PWPPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                G     S P  V GL   V+ IA G +H  AL   G +W WG N  GQLG G T 
Sbjct: 339 GQLGDGTTTARSTPAAVSGLPSGVETIAAGDYHTCALMSSGGVWCWGRNNSGQLGDGTTT 398

Query: 219 PRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            RS P  V GL SG+T   IAAGG H+ AL   G V+ WG    G+LG G +  SS   P
Sbjct: 399 ARSTPAAVSGLPSGVTA--IAAGGLHTCALMSSGGVWCWGLNNSGQLGDGSDTDSST--P 454

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             V+ LA   +  ++ GG H+ ALT  G ++ +GR + G+LG G  +    P+ V
Sbjct: 455 VAVSGLA-SGVETIAAGGWHTCALTSSGGVWCWGRNNSGQLGDGSTIYHITPVAV 508



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 168/384 (43%), Gaps = 52/384 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------------ 54
           ++ WG  + GQLG G    R     V  L P  V ++ AG+ ++ A+             
Sbjct: 74  VMCWGGNDFGQLGDGTPTTRSTPGAVSGL-PSGVTAIAAGNYHTCALTGSGGVRCWGANY 132

Query: 55  ----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                +G T   + P  V+ L +  +   A GG H  A+   G    WG N YGQ G+  
Sbjct: 133 SGQLGNGLTFGRSTPGAVSGLPS-GVTAIAAGGDHTCALMSSGGVMCWGDNYYGQLGD-- 189

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD-- 166
                 G    R   +     P   V  +AAGG H+  LT  G VW WG  +    GD  
Sbjct: 190 ------GTTTNRRTPVAVSGLPS-GVTAIAAGGLHTCALTGSGEVWCWGYNYYGQLGDGT 242

Query: 167 -IKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
                S P  V GL   +  IA G  H  AL   G +W WG N+ GQLG G     S P+
Sbjct: 243 TTYSRSTPAAVGGLPSGMTAIAAGGLHTCALMSSGGVWCWGRNDSGQLGDGSDTDSSTPV 302

Query: 225 PVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            V GL SG+T   IAAG +H+ ALT  GEV+ WG    G+L  GD   +++  P  V+ L
Sbjct: 303 AVSGLPSGVTA--IAAGDYHTCALTGSGEVWCWGGNGFGQL--GDGTTTARSTPAAVSGL 358

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
               +  ++ G  H+ AL   G ++ +GR + G+LG G       P  V   +P+   A 
Sbjct: 359 P-SGVETIAAGDYHTCALMSSGGVWCWGRNNSGQLGDGTTTARSTPAAVS-GLPSGVTA- 415

Query: 344 DGVDRRWIAKLVACGGRHTLAIVE 367
                      +A GG HT A++ 
Sbjct: 416 -----------IAAGGLHTCALMS 428



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 158/354 (44%), Gaps = 38/354 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WG    GQLG G++ +      V  L    V ++ AG  ++ A+       
Sbjct: 426 LMSSGGVWCWGLNNSGQLGDGSDTDSSTPVAVSGLAS-GVETIAAGGWHTCALTSSGGVW 484

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T     P  V+ L +  +   A G +H  A+   G  + WG N  G
Sbjct: 485 CWGRNNSGQLGDGSTIYHITPVAVSGLPS-GVTAIAAGDYHTCALTGSGGVWCWGYNLSG 543

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+            R   V        + V  +AAG  H+  LT  G VW WG  +  
Sbjct: 544 QLGDGTTTD-------RSTPVAVSGLTSGVTV--IAAGRFHTCALTSSGGVWCWGANFDG 594

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     + PV V GL   V  IA G +H  AL   G +W WG+N YGQLG G T  
Sbjct: 595 QLGDGTTTNRTTPVAVSGLPSGVTAIAAGGWHTCALTSSGEVWCWGDNYYGQLGDGTTTN 654

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
           RS P  V GL SG+T   IAAG  H+ ALT  GEV+ WG   +G+L  GD   +++  P 
Sbjct: 655 RSTPGAVSGLPSGVTA--IAAGWEHTCALTSSGEVWCWGDNYYGQL--GDGTTTNRSTPG 710

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            V+ L    +  ++ G  H+ ALT  G +  +G    G+LG GR +    P++V
Sbjct: 711 AVSGLP-SGVTAIAAGVYHTCALTGSGGVMCWGNNGDGQLGDGRPLYRTTPVDV 763



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/264 (36%), Positives = 126/264 (47%), Gaps = 21/264 (7%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKL 134
           +   A GG H  A+   G    WGGN++GQ G+  P  +   G +      +P       
Sbjct: 55  VTAIAAGGAHTCALTGSGGVMCWGGNDFGQLGDGTPTTRSTPGAVSG----LPSG----- 105

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQ-VKLIAVGA 189
            V  +AAG  H+  LT  G V  WG  +      G     S P  V GL   V  IA G 
Sbjct: 106 -VTAIAAGNYHTCALTGSGGVRCWGANYSGQLGNGLTFGRSTPGAVSGLPSGVTAIAAGG 164

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALT 248
            H  AL   G +  WG+N YGQLG G T  R  P+ V GL SG+T   IAAGG H+ ALT
Sbjct: 165 DHTCALMSSGGVMCWGDNYYGQLGDGTTTNRRTPVAVSGLPSGVTA--IAAGGLHTCALT 222

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
             GEV+ WG   +G+LG G     S+  P  V  L    +  ++ GG H+ AL   G ++
Sbjct: 223 GSGEVWCWGYNYYGQLGDGTTTY-SRSTPAAVGGLP-SGMTAIAAGGLHTCALMSSGGVW 280

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEV 332
            +GR D G+LG G    +  P+ V
Sbjct: 281 CWGRNDSGQLGDGSDTDSSTPVAV 304


>gi|340375548|ref|XP_003386296.1| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Amphimedon
            queenslandica]
          Length = 4694

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 181/400 (45%), Gaps = 69/400 (17%)

Query: 3    STTSIIAWGSGEDGQLG--IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
            ST S+  WG    GQLG   GN  +   +C  ++L       +  G +   A+ DDGK  
Sbjct: 3832 STFSVFGWGHNHRGQLGGIEGNKVKSPRLC--ESLSELNPAMITGGEQTLFAVTDDGKVY 3889

Query: 60   -------------KTENI--PSQVNALSNTKIVQAAI----GGWHCLAVDDQGRAYAWGG 100
                          ++N+  P+ + +L+   I    I    GG HCLAV  QG  YAWG 
Sbjct: 3890 ASGYAAHGRLGIGSSDNVATPTPLTSLATRGIAVKKIAIHSGGKHCLAVTTQGELYAWGE 3949

Query: 101  NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREG 153
             E G+ G         G  +  ++       P LI       V     G +HS  +T +G
Sbjct: 3950 GEDGKLG--------LGTTVNMNV-------PHLIESLKSKHVIDAGCGSSHSACITDDG 3994

Query: 154  HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWG 205
             ++TWG+         D +    P  V  L  EQV  +A G+     L     G +++WG
Sbjct: 3995 SLYTWGKGRYGRLGHNDHETQHKPKLVSALKGEQVTCVACGSGDAQTLCATASGCVFSWG 4054

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            + +YG+LG G  +    P  +  L+G  ++ +  G   S ALT  G VY WG+G++ RLG
Sbjct: 4055 DGDYGKLGRGGNEGSKVPKKIDSLTGKHVIKLLCGSQFSMALTTAGHVYTWGKGDYYRLG 4114

Query: 266  FGDNDKSSKMVPQKV-NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
             GD+  S +  P++V  LLA E+++ + CG  H +  T  G +FS+G  D G++G     
Sbjct: 4115 HGDD--SHQRTPRRVLGLLAHENVIDIGCGSLHCIVCTESGKVFSWGDNDEGQIGND--- 4169

Query: 325  TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             T Q + VP  I    N  D +        VACG  H++A
Sbjct: 4170 -TTQAVSVPKRI----NITDNI----CIDHVACGSAHSIA 4200



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 185/397 (46%), Gaps = 68/397 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--------AGSRNSLAICDDGK 58
            +  WG  +  QLG   +E        K   P + R++          GS+ S  + DDGK
Sbjct: 2926 VFVWGLNDMRQLGTDLSE-------AKVKSPIESRTLARLHPIQFAGGSKCSFVVSDDGK 2978

Query: 59   T----------------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGG 100
                                 +P Q+++LS   + + A+   G H LAV   G+ ++WG 
Sbjct: 2979 VFACGEGSSGRLGIGGFANIRMPHQISSLSMYVVRKVAVSCAGRHVLAVTADGKVFSWGD 3038

Query: 101  NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
             +YGQ G    +  D  +++  +I   +       +R+V+ G  HS  ++  G ++TWGQ
Sbjct: 3039 GQYGQLGHGSLQSYDRPKMI--EIFQAKH------IREVSCGTGHSAAVSVNGELFTWGQ 3090

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQL 212
                    GD    + P  V+ LE+V++  V       H LA   D +LWAWG+  +G+L
Sbjct: 3091 GADGRLGHGDSNNQTKPKLVRALEKVRISCVACGSRNAHTLA-AGDNSLWAWGDGSFGKL 3149

Query: 213  GTGDTQPRSQPIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            G  D    S  +PVQ ++  + ++ I  G   S  LT +G+VY WG+GE+ RLG   ND 
Sbjct: 3150 GLKDGS-SSTDVPVQVITFPSNIIQIECGMHFSVLLTKEGKVYTWGKGEYYRLG---NDS 3205

Query: 272  SS-KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            +S + +P  V+ LA + I QV+ G  H +ALT  G ++S+G  +HG+ G    +   +P 
Sbjct: 3206 TSVQPIPTLVDGLASKTITQVAVGALHCLALTSSGEVYSWGDNEHGQQGNNSTICNRKPQ 3265

Query: 331  EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             V             +    I K +ACG  H++A  +
Sbjct: 3266 IVA-----------SLKGHRICK-IACGSSHSIAFAQ 3290



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 119/197 (60%), Gaps = 11/197 (5%)

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL 195
            G H + LT++G V++WGQ        G+ +  + P  V  L  +++  I+ G+ H+ A+
Sbjct: 516 SGNHILALTKDGKVYSWGQGSNGVLGIGNTESQTAPTAVAALSGDRIVHISAGSMHSAAV 575

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV--DIAAGGWHSTALTDDGEV 253
            EDG L+ WG   YG+LG G+ + +  P  V+GL+G+ +V  D  +G  H+ AL D G+V
Sbjct: 576 TEDGVLYTWGKGSYGRLGHGNAEDKLIPTIVEGLNGVKIVQVDCGSGDAHTLALDDTGQV 635

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLL-AGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           + WG G++G+LG   +D++   VP+ ++ + +   +V++ CG   S+ALT+DG ++S+G 
Sbjct: 636 WSWGDGDYGKLGRPGSDQNK--VPKPISGIGSTSPVVKIICGNQISMALTKDGKLYSWGC 693

Query: 313 GDHGRLGYGRKVTTGQP 329
           GD  +LG+G +    QP
Sbjct: 694 GDTYQLGHGNQEHVRQP 710



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 25/195 (12%)

Query: 137 RQVAAGGTHSVVLTREGHVW----------TWGQPWPPGDIKQISVPVRVQGLEQVKLIA 186
           ++  +   H VVLT  G V+          T  Q + PGD + I +     G        
Sbjct: 466 KEFYSSPKHRVVLTVHGTVFYVMDASMGDFTVEQLFFPGDEEIIQIDHNPSG-------- 517

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
               H LAL +DG +++WG    G LG G+T+ ++ P  V  LSG  +V I+AG  HS A
Sbjct: 518 ---NHILALTKDGKVYSWGQGSNGVLGIGNTESQTAPTAVAALSGDRIVHISAGSMHSAA 574

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRD 304
           +T+DG +Y WG+G +GRLG G+ +   K++P  V  L G  IVQV CG    H++AL   
Sbjct: 575 VTEDGVLYTWGKGSYGRLGHGNAE--DKLIPTIVEGLNGVKIVQVDCGSGDAHTLALDDT 632

Query: 305 GHIFSFGRGDHGRLG 319
           G ++S+G GD+G+LG
Sbjct: 633 GQVWSWGDGDYGKLG 647



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 136/294 (46%), Gaps = 38/294 (12%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCG---EEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
            G H LA+   G+ Y+WG    G  G    E +        L  D ++            
Sbjct: 516 SGNHILALTKDGKVYSWGQGSNGVLGIGNTESQTAPTAVAALSGDRIV-----------H 564

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAF 190
           ++AG  HS  +T +G ++TWG+        G+ +   +P  V+GL  VK++ V    G  
Sbjct: 565 ISAGSMHSAAVTEDGVLYTWGKGSYGRLGHGNAEDKLIPTIVEGLNGVKIVQVDCGSGDA 624

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTD 249
           H LAL + G +W+WG+ +YG+LG   +     P P+ G+ S   +V I  G   S ALT 
Sbjct: 625 HTLALDDTGQVWSWGDGDYGKLGRPGSDQNKVPKPISGIGSTSPVVKIICGNQISMALTK 684

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG++Y WG G+  +LG G+ +   +  P+ +  L+   +  VS G  H VALT D  +++
Sbjct: 685 DGKLYSWGCGDTYQLGHGNQEHVRQ--PKLIEGLSETVVSDVSVGAQHCVALTTDSDVYA 742

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +G+     +       +G  +  P+ I A    G        A L+ACG   T 
Sbjct: 743 WGKNSSFEVN-----ESGDIISSPLMIEAASGKG--------ALLIACGASETF 783



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 132/283 (46%), Gaps = 36/283 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV-LTREGH 154
            + WG N  GQ G     K  + R+            P +I      GG  ++  +T +G 
Sbjct: 3837 FGWGHNHRGQLGGIEGNKVKSPRLCES----LSELNPAMI-----TGGEQTLFAVTDDGK 3887

Query: 155  VWTWGQP----WPPGDIKQISVPVRVQGLEQ----VKLIAV--GAFHNLALQEDGALWAW 204
            V+  G         G    ++ P  +  L      VK IA+  G  H LA+   G L+AW
Sbjct: 3888 VYASGYAAHGRLGIGSSDNVATPTPLTSLATRGIAVKKIAIHSGGKHCLAVTTQGELYAW 3947

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  E G+LG G T   + P  ++ L    ++D   G  HS  +TDDG +Y WG+G +GRL
Sbjct: 3948 GEGEDGKLGLGTTVNMNVPHLIESLKSKHVIDAGCGSSHSACITDDGSLYTWGKGRYGRL 4007

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGR 322
            G  D++   K  P+ V+ L GE +  V+CG     ++  T  G +FS+G GD+G+LG G 
Sbjct: 4008 GHNDHETQHK--PKLVSALKGEQVTCVACGSGDAQTLCATASGCVFSWGDGDYGKLGRGG 4065

Query: 323  KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
               +  P ++           D +  + + KL+ CG + ++A+
Sbjct: 4066 NEGSKVPKKI-----------DSLTGKHVIKLL-CGSQFSMAL 4096



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 26/255 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T+++  P+ V ALS  +IV  + G  H  AV + G  Y WG   YG+ G         
Sbjct: 543 GNTESQTAPTAVAALSGDRIVHISAGSMHSAAVTEDGVLYTWGKGSYGRLGHGNAE---- 598

Query: 117 GRILRRDIVIPQRCA----PKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDI 167
                 D +IP         K++     +G  H++ L   G VW+WG     +   PG  
Sbjct: 599 ------DKLIPTIVEGLNGVKIVQVDCGSGDAHTLALDDTGQVWSWGDGDYGKLGRPGS- 651

Query: 168 KQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            Q  VP  + G+     V  I  G   ++AL +DG L++WG  +  QLG G+ +   QP 
Sbjct: 652 DQNKVPKPISGIGSTSPVVKIICGNQISMALTKDGKLYSWGCGDTYQLGHGNQEHVRQPK 711

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            ++GLS   + D++ G  H  ALT D +VY WG+     +    +  SS   P  +   +
Sbjct: 712 LIEGLSETVVSDVSVGAQHCVALTTDSDVYAWGKNSSFEVNESGDIISS---PLMIEAAS 768

Query: 285 GEDIVQVSCGGTHSV 299
           G+  + ++CG + + 
Sbjct: 769 GKGALLIACGASETF 783



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 83/341 (24%)

Query: 87   LAVDDQG-RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            L+ D  G + + WG N+  Q G +           +    I  R   +L   Q A G   
Sbjct: 2917 LSTDTHGNKVFVWGLNDMRQLGTDLSEA-------KVKSPIESRTLARLHPIQFAGGSKC 2969

Query: 146  SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAVGAF--HNLALQE 197
            S V++ +G V+  G+        G    I +P ++  L    V+ +AV     H LA+  
Sbjct: 2970 SFVVSDDGKVFACGEGSSGRLGIGGFANIRMPHQISSLSMYVVRKVAVSCAGRHVLAVTA 3029

Query: 198  DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            DG +++WG+ +YGQLG G  Q   +P  ++      + +++ G  HS A++ +GE++ WG
Sbjct: 3030 DGKVFSWGDGQYGQLGHGSLQSYDRPKMIEIFQAKHIREVSCGTGHSAAVSVNGELFTWG 3089

Query: 258  RGEHGRLGFGDNDKSSKMVPQKV-------------------NLLAGE------------ 286
            +G  GRLG GD++  +K  P+ V                    L AG+            
Sbjct: 3090 QGADGRLGHGDSNNQTK--PKLVRALEKVRISCVACGSRNAHTLAAGDNSLWAWGDGSFG 3147

Query: 287  ----------------------DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
                                  +I+Q+ CG   SV LT++G ++++G+G++ RL  G   
Sbjct: 3148 KLGLKDGSSSTDVPVQVITFPSNIIQIECGMHFSVLLTKEGKVYTWGKGEYYRL--GNDS 3205

Query: 325  TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            T+ QP+   +         DG+  + I + VA G  H LA+
Sbjct: 3206 TSVQPIPTLV---------DGLASKTITQ-VAVGALHCLAL 3236



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 34/260 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG G +G LGIGN E +     V AL   ++  + AGS +S A+ +DG   T     
Sbjct: 529 VYSWGQGSNGVLGIGNTESQTAPTAVAALSGDRIVHISAGSMHSAAVTEDGVLYTWGKGS 588

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                      + IP+ V  L+  KIVQ   G    H LA+DD G+ ++WG  +YG+ G 
Sbjct: 589 YGRLGHGNAEDKLIPTIVEGLNGVKIVQVDCGSGDAHTLALDDTGQVWSWGDGDYGKLG- 647

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPP 164
              R       + + I      +P   V ++  G   S+ LT++G +++WG         
Sbjct: 648 ---RPGSDQNKVPKPISGIGSTSP---VVKIICGNQISMALTKDGKLYSWGCGDTYQLGH 701

Query: 165 GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG-TGDTQPRS 221
           G+ + +  P  ++GL +  V  ++VGA H +AL  D  ++AWG N   ++  +GD    S
Sbjct: 702 GNQEHVRQPKLIEGLSETVVSDVSVGAQHCVALTTDSDVYAWGKNSSFEVNESGDI--IS 759

Query: 222 QPIPVQGLSGLTLVDIAAGG 241
            P+ ++  SG   + IA G 
Sbjct: 760 SPLMIEAASGKGALLIACGA 779



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           +D    G H  ALT DG+VY WG+G +G LG G+ +  S+  P  V  L+G+ IV +S G
Sbjct: 511 IDHNPSGNHILALTKDGKVYSWGQGSNGVLGIGNTE--SQTAPTAVAALSGDRIVHISAG 568

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYG 321
             HS A+T DG ++++G+G +GRLG+G
Sbjct: 569 SMHSAAVTEDGVLYTWGKGSYGRLGHG 595



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 24/166 (14%)

Query: 2    ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK--- 58
            A   S+ AWG G  G+LG+ +      V V     P  +  +  G   S+ +  +GK   
Sbjct: 3133 AGDNSLWAWGDGSFGKLGLKDGSSSTDVPVQVITFPSNIIQIECGMHFSVLLTKEGKVYT 3192

Query: 59   -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         T  + IP+ V+ L++  I Q A+G  HCLA+   G  Y+WG NE+GQ
Sbjct: 3193 WGKGEYYRLGNDSTSVQPIPTLVDGLASKTITQVAVGALHCLALTSSGEVYSWGDNEHGQ 3252

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
             G       +   I  R   I        I + +A G +HS+   +
Sbjct: 3253 QG-------NNSTICNRKPQIVASLKGHRICK-IACGSSHSIAFAQ 3290



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV--SCGGTHSVALTRDGHIFSFGRGDHGRL 318
           HG + +  +        +++     E+I+Q+  +  G H +ALT+DG ++S+G+G +G L
Sbjct: 481 HGTVFYVMDASMGDFTVEQLFFPGDEEIIQIDHNPSGNHILALTKDGKVYSWGQGSNGVL 540

Query: 319 GYGRKVTTGQPMEV 332
           G G   +   P  V
Sbjct: 541 GIGNTESQTAPTAV 554


>gi|242014091|ref|XP_002427731.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
 gi|212512172|gb|EEB14993.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
          Length = 4834

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 185/398 (46%), Gaps = 59/398 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   +V G +  LA+  DGK       
Sbjct: 3969 TIYGWGHNHRGQLGGVEGPKVKIPTSCEALSALRPVQLVGGEQTLLAVTSDGKVYATGYG 4028

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T T   P+ + ++ +  I + A+  GG HCLA+   G+ Y+WG  + G+ G
Sbjct: 4029 AGGRLGLGGTDTILTPTLLESIQHIFIKKVAVNSGGKHCLALSTDGKVYSWGEGDDGKLG 4088

Query: 108  EEPERKDDTGRILR----RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
               +   D  +++     ++IV             +A GG HS  +T  G ++TWG+   
Sbjct: 4089 HGNKNGCDHPQLIDALQGKEIV------------DIACGGAHSAAVTAGGEIYTWGKGRY 4136

Query: 161  -PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 GD +    P  V+ L   K+I +    G    L + +D  +W+WG+ +YG+LG G
Sbjct: 4137 GRLGHGDSEDQMKPKLVETLIGFKVIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRG 4196

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
             +     P+ ++ L+GL +V +  G   S ALT  G VY WG+G++ RLG G ++     
Sbjct: 4197 GSDGCKIPMKIESLAGLGVVKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGSDEHVRH- 4255

Query: 276  VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
             P+K+  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G      +P  V   
Sbjct: 4256 -PKKIAALQGKKIICIATGSLHCVACSDLGEVFTWGDNDEGQLGDGTMNAIHRPRLVVT- 4313

Query: 336  IPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                   G  ++R      VACG  H+LA   W T +S
Sbjct: 4314 -----LQGKNINR------VACGSAHSLA---WSTNKS 4337



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 187/397 (47%), Gaps = 51/397 (12%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
            S T +  WG  +  QLG     + +     ++L   K   +  GS++   +  DGK    
Sbjct: 2983 SPTKVFVWGLNDKDQLGGLKGSKVKVPVYSESLTALKPIHIAGGSKSLFIVSYDGKLYAC 3042

Query: 60   -----------KTENI--PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYG 104
                        + N+  P Q+ +L+   I + A+  GG H +A+   G+ ++WG  E G
Sbjct: 3043 GEGTNGRLGLGHSNNVATPCQLTSLNQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDG 3102

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
            + G +     D  +++  + +  +R      +R +A G +HS  ++  G ++TWG     
Sbjct: 3103 KLGHDNRLSLDRPKMI--EALKSKR------IRDIACGSSHSAAISSTGELFTWGLGEYG 3154

Query: 161  PWPPGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGD 216
                GD      P  V+ L    +  +A G+     LAL  +G +++WG+ ++G+LG G 
Sbjct: 3155 RLGHGDNLTQLRPKLVKALLGHHIVQVACGSRDAQTLALSAEGLVFSWGDGDFGKLGRGG 3214

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            ++    P  ++ L+GL +  I  G   S ALT  G+VY WG+G++ RLG G +    K  
Sbjct: 3215 SEGCDIPHNIERLNGLGVCMIECGAQFSLALTKFGQVYTWGKGDYFRLGHGSDQHVRK-- 3272

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P  V  L+ + IV V+ G  H +  T  G ++++G  DHG+ G G  +   +P  V +N+
Sbjct: 3273 PTLVESLSEKKIVHVAVGALHCLCATDQGQVYAWGDNDHGQQGNGTILVNRKPSLV-LNL 3331

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
               R     V+R      VACG  H++A   W T ++
Sbjct: 3332 EGVR-----VNR------VACGSSHSIA---WTTSDT 3354



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 159/322 (49%), Gaps = 44/322 (13%)

Query: 59   TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
            T  E IP +V  LS T            L  D   + + WG N+          KD  G 
Sbjct: 2959 TDYEEIP-EVKTLSET-------SSHSKLWSDSPTKVFVWGLND----------KDQLGG 3000

Query: 119  ILRRDIVIPQRCAPKLIVRQV-AAGGTHSV-VLTREGHVWTWGQ----PWPPGDIKQISV 172
            +    + +P        ++ +  AGG+ S+ +++ +G ++  G+        G    ++ 
Sbjct: 3001 LKGSKVKVPVYSESLTALKPIHIAGGSKSLFIVSYDGKLYACGEGTNGRLGLGHSNNVAT 3060

Query: 173  PVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P ++  L Q  +K +AV  G  H +AL  DG +++WG  E G+LG  +     +P  ++ 
Sbjct: 3061 PCQLTSLNQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHDNRLSLDRPKMIEA 3120

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L    + DIA G  HS A++  GE++ WG GE+GRLG GDN   +++ P+ V  L G  I
Sbjct: 3121 LKSKRIRDIACGSSHSAAISSTGELFTWGLGEYGRLGHGDN--LTQLRPKLVKALLGHHI 3178

Query: 289  VQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            VQV+CG     ++AL+ +G +FS+G GD G+LG G      +  ++P NI   R  G GV
Sbjct: 3179 VQVACGSRDAQTLALSAEGLVFSWGDGDFGKLGRG----GSEGCDIPHNI--ERLNGLGV 3232

Query: 347  DRRWIAKLVACGGRHTLAIVEW 368
                   ++ CG + +LA+ ++
Sbjct: 3233 ------CMIECGAQFSLALTKF 3248



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 138/310 (44%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +++   + +WG G+DG+LG GN                               CD     
Sbjct: 4070 LSTDGKVYSWGEGDDGKLGHGNKNG----------------------------CDH---- 4097

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                P  ++AL   +IV  A GG H  AV   G  Y WG   YG+ G          +++
Sbjct: 4098 ----PQLIDALQGKEIVDIACGGAHSAAVTAGGEIYTWGKGRYGRLGHGDSEDQMKPKLV 4153

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
               I        K+I     +G   ++ +T + +VW+WG     GD  ++         +
Sbjct: 4154 ETLI------GFKVIDIACGSGDAQTLCITDDDNVWSWGD----GDYGKLGRGGSDGCKI 4203

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P++++ L  + ++ V  G+  ++AL   G+++ WG  +Y +LG G  +    P  +  L 
Sbjct: 4204 PMKIESLAGLGVVKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGSDEHVRHPKKIAALQ 4263

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A +D GEV+ WG  + G+LG G  +   +  P+ V  L G++I +
Sbjct: 4264 GKKIICIATGSLHCVACSDLGEVFTWGDNDEGQLGDGTMNAIHR--PRLVVTLQGKNINR 4321

Query: 291  VSCGGTHSVA 300
            V+CG  HS+A
Sbjct: 4322 VACGSAHSLA 4331



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 132/303 (43%), Gaps = 56/303 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WG+G+ G+LG G+N  R+                                     P+
Sbjct: 542 VYSWGNGDGGRLGHGDNNSRDQ------------------------------------PT 565

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI---LRRD 123
           ++  L    ++  + G  +  AV   G  Y WG   YG+ G           +   L+  
Sbjct: 566 KITELVGKNVIHISCGATYSAAVTSSGEVYTWGRGNYGRLGHGTSEDHTVPTLVVGLKDY 625

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS----VPVRVQGL 179
            ++   C          +G   ++ +T  G V++WG           S     P  ++ L
Sbjct: 626 FIVDIACG---------SGDAQTLAVTNTGLVFSWGDGGYGKLGTGGSDGSKTPKLIEKL 676

Query: 180 EQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           + +++  +  G+  +LAL + G+++ WG  +  +LG G       P  V+GL+G  +  +
Sbjct: 677 QDIEVARVYCGSQFSLALTKSGSVYTWGKGDNHRLGHGSENHVRFPKLVEGLNGKCIKKV 736

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A G  H  ALTDDGEVYGWGR ++G++  G+  +++   P  + LL G++IV + CG   
Sbjct: 737 AVGSGHVLALTDDGEVYGWGRNDNGQV--GETSETNVSEPTLLTLLQGKNIVDIDCGPNQ 794

Query: 298 SVA 300
           S+A
Sbjct: 795 SIA 797



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 141/306 (46%), Gaps = 26/306 (8%)

Query: 40  VRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKI--VQAAIGGWHCLAVDD 91
           V+ +V   R  L +   GK      +     P Q+      +I  + A   G H LA+  
Sbjct: 479 VKQIVCAERWLLILTLTGKVYIMYYSSETQCPEQIEGFDGKEISKLAAHADGKHSLALSC 538

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y+WG  + G+ G       D      +   I +     +I   ++ G T+S  +T 
Sbjct: 539 DGDVYSWGNGDGGRLGHGDNNSRD------QPTKITELVGKNVI--HISCGATYSAAVTS 590

Query: 152 EGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWA 203
            G V+TWG+        G  +  +VP  V GL+   ++ +    G    LA+   G +++
Sbjct: 591 SGEVYTWGRGNYGRLGHGTSEDHTVPTLVVGLKDYFIVDIACGSGDAQTLAVTNTGLVFS 650

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG+  YG+LGTG +     P  ++ L  + +  +  G   S ALT  G VY WG+G++ R
Sbjct: 651 WGDGGYGKLGTGGSDGSKTPKLIEKLQDIEVARVYCGSQFSLALTKSGSVYTWGKGDNHR 710

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           LG G  +      P+ V  L G+ I +V+ G  H +ALT DG ++ +GR D+G++G   +
Sbjct: 711 LGHGSENHVR--FPKLVEGLNGKCIKKVAVGSGHVLALTDDGEVYGWGRNDNGQVGETSE 768

Query: 324 VTTGQP 329
               +P
Sbjct: 769 TNVSEP 774



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 16/193 (8%)

Query: 127 PQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKL 184
           PQ C    +L V+Q+       ++LT  G V+            +   P +++G +  ++
Sbjct: 468 PQSCDSIRELGVKQIVCAERWLLILTLTGKVYIMYYS------SETQCPEQIEGFDGKEI 521

Query: 185 IAVGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
             + A     H+LAL  DG +++WGN + G+LG GD   R QP  +  L G  ++ I+ G
Sbjct: 522 SKLAAHADGKHSLALSCDGDVYSWGNGDGGRLGHGDNNSRDQPTKITELVGKNVIHISCG 581

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THS 298
             +S A+T  GEVY WGRG +GRLG G ++  +  VP  V  L    IV ++CG     +
Sbjct: 582 ATYSAAVTSSGEVYTWGRGNYGRLGHGTSEDHT--VPTLVVGLKDYFIVDIACGSGDAQT 639

Query: 299 VALTRDGHIFSFG 311
           +A+T  G +FS+G
Sbjct: 640 LAVTNTGLVFSWG 652



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 22/235 (9%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           A G HS+ L+ +G V++WG         GD      P ++  L  + V  I+ GA ++ A
Sbjct: 528 ADGKHSLALSCDGDVYSWGNGDGGRLGHGDNNSRDQPTKITELVGKNVIHISCGATYSAA 587

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG--WHSTALTDDGE 252
           +   G ++ WG   YG+LG G ++  + P  V GL    +VDIA G     + A+T+ G 
Sbjct: 588 VTSSGEVYTWGRGNYGRLGHGTSEDHTVPTLVVGLKDYFIVDIACGSGDAQTLAVTNTGL 647

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG G +G+LG G +D S    P+ +  L   ++ +V CG   S+ALT+ G ++++G+
Sbjct: 648 VFSWGDGGYGKLGTGGSDGSK--TPKLIEKLQDIEVARVYCGSQFSLALTKSGSVYTWGK 705

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           GD+ RLG+G +     P  V           +G++ + I K VA G  H LA+ +
Sbjct: 706 GDNHRLGHGSENHVRFPKLV-----------EGLNGKCIKK-VAVGSGHVLALTD 748



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 110/254 (43%), Gaps = 48/254 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++ST  +  WG GE G+LG G+N  +    +VKAL  + +  V  GSR       D +T 
Sbjct: 3139 ISSTGELFTWGLGEYGRLGHGDNLTQLRPKLVKALLGHHIVQVACGSR-------DAQT- 3190

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      LA+  +G  ++WG  ++G+ G       D    +
Sbjct: 3191 --------------------------LALSAEGLVFSWGDGDFGKLGRGGSEGCDIPHNI 3224

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             R           L V  +  G   S+ LT+ G V+TWG+        G  + +  P  V
Sbjct: 3225 ER--------LNGLGVCMIECGAQFSLALTKFGQVYTWGKGDYFRLGHGSDQHVRKPTLV 3276

Query: 177  QGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L + K+  +AVGA H L   + G ++AWG+N++GQ G G      +P  V  L G+ +
Sbjct: 3277 ESLSEKKIVHVAVGALHCLCATDQGQVYAWGDNDHGQQGNGTILVNRKPSLVLNLEGVRV 3336

Query: 235  VDIAAGGWHSTALT 248
              +A G  HS A T
Sbjct: 3337 NRVACGSSHSIAWT 3350



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 56/188 (29%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P   + LS L                          
Sbjct: 3968 GTIYGWGHNHRGQLGGVEGPKVKIPTSCEALSALRPVQLVGGEQTLLAVTSDGKVYATGY 4027

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ DG+VY WG G+ G+L
Sbjct: 4028 GAGGRLGLGGTDTILTPTLLESIQHIFIKKVAVNSGGKHCLALSTDGKVYSWGEGDDGKL 4087

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            G G+ +      PQ ++ L G++IV ++CGG HS A+T  G I+++G+G +GRLG+G   
Sbjct: 4088 GHGNKNGCDH--PQLIDALQGKEIVDIACGGAHSAAVTAGGEIYTWGKGRYGRLGHGDSE 4145

Query: 325  TTGQPMEV 332
               +P  V
Sbjct: 4146 DQMKPKLV 4153



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 48/252 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  +  WG G  G+LG G +E+     +V  L+ Y +  +  GS             
Sbjct: 588 VTSSGEVYTWGRGNYGRLGHGTSEDHTVPTLVVGLKDYFIVDIACGS------------- 634

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                G    LAV + G  ++WG   YG+ G        T +++
Sbjct: 635 ---------------------GDAQTLAVTNTGLVFSWGDGGYGKLGTGGSDGSKTPKLI 673

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
            +           + V +V  G   S+ LT+ G V+TWG+        G    +  P  V
Sbjct: 674 EK--------LQDIEVARVYCGSQFSLALTKSGSVYTWGKGDNHRLGHGSENHVRFPKLV 725

Query: 177 QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +GL  + +K +AVG+ H LAL +DG ++ WG N+ GQ+G       S+P  +  L G  +
Sbjct: 726 EGLNGKCIKKVAVGSGHVLALTDDGEVYGWGRNDNGQVGETSETNVSEPTLLTLLQGKNI 785

Query: 235 VDIAAGGWHSTA 246
           VDI  G   S A
Sbjct: 786 VDIDCGPNQSIA 797


>gi|139948634|ref|NP_001077132.1| probable E3 ubiquitin-protein ligase HERC3 [Bos taurus]
 gi|124829040|gb|AAI33342.1| HERC3 protein [Bos taurus]
 gi|296486686|tpg|DAA28799.1| TPA: hect domain and RLD 3 [Bos taurus]
          Length = 1050

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+ +G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDQGQLFSWGAGSDGQLGLMTIEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSC 293
             + AGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRTQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG +HTLA V
Sbjct: 291 LMGSEVTQIACGRQHTLAFV 310



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 162/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISPNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ DQG+ ++WG    GQ   
Sbjct: 59  GVNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTIEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +  G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 130/278 (46%), Gaps = 28/278 (10%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGH 154
            WG    GQ G  P         L+  +  PQ C       V++VA GG HSV L  +G 
Sbjct: 3   CWGYWSLGQPGISPN--------LQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGE 54

Query: 155 VWTWG--QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           V+T G       G  ++ + P ++  L  + +  +A G  H+LAL + G L++WG    G
Sbjct: 55  VYTCGVNTKGQLGHEREGNKPEQIGALADQHIVHVACGESHSLALSDQGQLFSWGAGSDG 114

Query: 211 QLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           QLG    +   + P  +Q L+  T++ ++ G WH  AL  DG+ + WGR  HG+LG G  
Sbjct: 115 QLGLMTIEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRNSHGQLGLG-K 173

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +  S+  PQ+V  L G  + QV  GG HS AL+  G +F +G  + G+LG   +     P
Sbjct: 174 EFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESP 233

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             V +             R      ++CG  HT  + +
Sbjct: 234 CHVKL------------LRTQKVVYISCGEEHTAVLTK 259



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTIEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGRN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q   GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVVAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|384245912|gb|EIE19404.1| RCC1/BLIP-II [Coccomyxa subellipsoidea C-169]
          Length = 598

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 177/393 (45%), Gaps = 50/393 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           + +S+  WG  + GQ G G ++       V+AL+   V     GS NS  +  DG+  T 
Sbjct: 35  AVSSLYTWGRSDLGQTGSGRDQNSTAPEPVQALQGKDVVHAAGGSYNSAFVTRDGELYTT 94

Query: 63  NI----------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                             P +V+AL    +   A G  H LAV D G   AWG NEYGQ 
Sbjct: 95  GSNDARQLGVKGREVALEPIRVSALEMNNVHGVACGQGHMLAVVDNGHLAAWGSNEYGQL 154

Query: 107 GE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
           G  E        R+L+R      R A      +VAAG THS+ LT  G V+++G+     
Sbjct: 155 GTGEVGASAAQPRVLKRI-----RGA---HFARVAAGATHSLALTSSGQVYSFGEGSFGA 206

Query: 162 WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD+   + P  VQ L  E +  IA G + + A+   G ++ WG N+YGQLG G+   
Sbjct: 207 LGHGDVNNRAKPTLVQALWPEAIVSIAAGEYFSAAVSLSGRVFTWGRNKYGQLGNGEFGN 266

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM---- 275
              P PV G+     V +A G  H  ALT  GEVY WG    G+LG G N  S  +    
Sbjct: 267 AFLPQPVPGIE--QAVQVACGDHHCIALTRWGEVYTWGLHSSGQLGQGSNLGSEALNGCL 324

Query: 276 -VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             P +V+ LA + I QVS G  HS  ++    ++  G  D G+L      +   P  VP 
Sbjct: 325 CSPSRVDSLADQSIRQVSAGARHSFFVSPGEQLWGAGANDEGQLALQSVPSVALPTRVP- 383

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +P       G+  R+        G H++A+++
Sbjct: 384 GLP-------GLPMRF----AVAAGDHSIAVLD 405



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 138/284 (48%), Gaps = 39/284 (13%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           Y WG ++ GQ G        +GR        P +      V   A G  +S  +TR+G +
Sbjct: 40  YTWGRSDLGQTG--------SGRDQNSTAPEPVQALQGKDVVHAAGGSYNSAFVTRDGEL 91

Query: 156 WTWGQPWPPGDIKQISV--------PVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWG 205
           +T G      D +Q+ V        P+RV  LE   V  +A G  H LA+ ++G L AWG
Sbjct: 92  YTTGS----NDARQLGVKGREVALEPIRVSALEMNNVHGVACGQGHMLAVVDNGHLAAWG 147

Query: 206 NNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           +NEYGQLGTG+     +QP  ++ + G     +AAG  HS ALT  G+VY +G G  G L
Sbjct: 148 SNEYGQLGTGEVGASAAQPRVLKRIRGAHFARVAAGATHSLALTSSGQVYSFGEGSFGAL 207

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           G GD +  +K  P  V  L  E IV ++ G   S A++  G +F++GR  +G+LG G   
Sbjct: 208 GHGDVNNRAK--PTLVQALWPEAIVSIAAGEYFSAAVSLSGRVFTWGRNKYGQLGNGEFG 265

Query: 325 TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               P  VP           G+++   A  VACG  H +A+  W
Sbjct: 266 NAFLPQPVP-----------GIEQ---AVQVACGDHHCIALTRW 295



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 28/311 (9%)

Query: 25  EREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGW 84
           ER+    +  L P  V S+    R+ L     G+ +    P  V AL    +V AA G +
Sbjct: 22  ERQLSWALPELPP-AVSSLYTWGRSDLGQTGSGRDQNSTAPEPVQALQGKDVVHAAGGSY 80

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI-PQRCAPKLI--VRQVAA 141
           +   V   G  Y  G N+  Q G           +  R++ + P R +   +  V  VA 
Sbjct: 81  NSAFVTRDGELYTTGSNDARQLG-----------VKGREVALEPIRVSALEMNNVHGVAC 129

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDI----KQISVPVRVQGLEQVKLIAVGAFHNL 193
           G  H + +   GH+  WG         G++     Q  V  R++G    + +A GA H+L
Sbjct: 130 GQGHMLAVVDNGHLAAWGSNEYGQLGTGEVGASAAQPRVLKRIRGAHFAR-VAAGATHSL 188

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL   G ++++G   +G LG GD   R++P  VQ L    +V IAAG + S A++  G V
Sbjct: 189 ALTSSGQVYSFGEGSFGALGHGDVNNRAKPTLVQALWPEAIVSIAAGEYFSAAVSLSGRV 248

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WGR ++G+LG G+   +   +PQ V  +  E  VQV+CG  H +ALTR G ++++G  
Sbjct: 249 FTWGRNKYGQLGNGEFGNA--FLPQPVPGI--EQAVQVACGDHHCIALTRWGEVYTWGLH 304

Query: 314 DHGRLGYGRKV 324
             G+LG G  +
Sbjct: 305 SSGQLGQGSNL 315



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 113/275 (41%), Gaps = 42/275 (15%)

Query: 7   IIAWGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + AWGS E GQLG G          V+K +       V AG+ +SLA+   G+  +    
Sbjct: 143 LAAWGSNEYGQLGTGEVGASAAQPRVLKRIRGAHFARVAAGATHSLALTSSGQVYSFGEG 202

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P+ V AL    IV  A G +   AV   GR + WG N+YGQ G  
Sbjct: 203 SFGALGHGDVNNRAKPTLVQALWPEAIVSIAAGEYFSAAVSLSGRVFTWGRNKYGQLG-- 260

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                + G     +  +PQ         QVA G  H + LTR G V+TWG     G + Q
Sbjct: 261 ---NGEFG-----NAFLPQPVPGIEQAVQVACGDHHCIALTRWGEVYTWGL-HSSGQLGQ 311

Query: 170 ------------ISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                       +  P RV  L  + ++ ++ GA H+  +     LW  G N+ GQL   
Sbjct: 312 GSNLGSEALNGCLCSPSRVDSLADQSIRQVSAGARHSFFVSPGEQLWGAGANDEGQLALQ 371

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
                + P  V GL GL +    A G HS A+ D+
Sbjct: 372 SVPSVALPTRVPGLPGLPMRFAVAAGDHSIAVLDE 406


>gi|410048912|ref|XP_003952667.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
            HERC2-like [Pan troglodytes]
          Length = 4776

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 164/324 (50%), Gaps = 35/324 (10%)

Query: 59   TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
            T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G       D 
Sbjct: 3964 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDR 4023

Query: 117  GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV 172
             R++     I         V  VAAGG HS  +T  G ++TWG+         D +    
Sbjct: 4024 PRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLK 4075

Query: 173  PVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +     P+ +  
Sbjct: 4076 PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 4135

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++V  L G+ +
Sbjct: 4136 LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQVQGLQGKKV 4193

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A +  G  V+R
Sbjct: 4194 IAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAALQ--GKKVNR 4247

Query: 349  RWIAKLVACGGRHTLAIVEWQTEE 372
                  VACG  HTLA   W T +
Sbjct: 4248 ------VACGSAHTLA---WSTSK 4262



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 165/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2974 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3024

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 3025 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3084

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3085 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3144

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3145 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3202

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3203 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 3251

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3252 IVH-VAVGALHCLAVTD 3267



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 156/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 3006 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 3061

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3062 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 3121

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3122 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3166

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3167 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3222

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3223 GKGDYFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQ 3282

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3283 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3318



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 136/313 (43%), Gaps = 64/313 (20%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN                               CD     
Sbjct: 3996 LSSEGEVYSWGEAEDGKLGHGNRSP----------------------------CDR---- 4023

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L   ++V  A GG H   V   G  Y WG   YG+ G    E + K    
Sbjct: 4024 ----PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 4079

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L+   V+   C          +G   ++ LT +  VW+WG     GD  ++       
Sbjct: 4080 EALQGHRVVDIACG---------SGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDG 4126

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              VP+++  L  + ++ V  G+  ++AL + GA++ WG  +Y +LG G      +P  VQ
Sbjct: 4127 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQ 4186

Query: 228  GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            GL G  ++ IA G  H    T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ 
Sbjct: 4187 GLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKK 4244

Query: 288  IVQVSCGGTHSVA 300
            + +V+CG  H++A
Sbjct: 4245 VNRVACGSAHTLA 4257



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 4/123 (3%)

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGR 258
            L+A G    G+LG G T+  S P  ++ +  + +  +A  +GG H  AL+ +GEVY WG 
Sbjct: 3948 LYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 4007

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
             E G+LG G+     +  P+ +  L G ++V V+ GG HS  +T  G ++++G+G +GRL
Sbjct: 4008 AEDGKLGHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRL 4065

Query: 319  GYG 321
            G+ 
Sbjct: 4066 GHS 4068



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3107 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3166

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3167 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3226

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3227 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDSGQVYAWGDND 3278

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3279 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3316


>gi|170060307|ref|XP_001865743.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
 gi|167878807|gb|EDS42190.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
          Length = 1063

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 171/371 (46%), Gaps = 67/371 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++  WGS   G+LG+G  EE + +                                   P
Sbjct: 2   ALYCWGSTVHGELGLGGIEEEQVMT----------------------------------P 27

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            +++      + QAA GG H L +   G+ Y  G N++GQ G       DT  +  +   
Sbjct: 28  REMDWSQAANVQQAACGGSHTLLLTKDGKLYTCGNNDHGQLGH------DTNNLPNKR-- 79

Query: 126 IPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---GDIKQISVP----VRV 176
            PQ  +     IV QV+ G +HS+ LT  G +++WG         D+  +S P    ++ 
Sbjct: 80  -PQFISALENYIVTQVSCGLSHSLALTNWGQLFSWGSNATGQLGHDLDMVSYPAPRMIKS 138

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLV 235
              + V  I+ G  H LAL   G L+AWG NEYGQLG G T  +      V+ L+G+ + 
Sbjct: 139 IATKTVVQISCGHSHCLALTNSGELFAWGANEYGQLGLGTTGKKVPTATLVKSLAGIPIA 198

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA GG HS A++  G ++GWG+   G+LG   ND  S+  P ++  L    +  +SCG 
Sbjct: 199 FIACGGNHSFAVSKSGAIFGWGKNTFGQLGL--NDLDSRCYPTQLKTLRSLGVRYISCGD 256

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
             SV LT++G +F+ G G  G+LG+G   T G       N   PR   + +  +     +
Sbjct: 257 DFSVFLTQEGGVFTCGLGTFGQLGHG---THG-------NEILPRMVFELMGSKITQ--I 304

Query: 356 ACGGRHTLAIV 366
           ACG +HTLA V
Sbjct: 305 ACGRKHTLAFV 315



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG   HG LG G  ++   M P++++     ++ Q +CGG+H++ LT+DG +++ G 
Sbjct: 3   LYCWGSTVHGELGLGGIEEEQVMTPREMDWSQAANVQQAACGGSHTLLLTKDGKLYTCGN 62

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            DHG+LG+    T   P + P  I A  N        +I   V+CG  H+LA+  W
Sbjct: 63  NDHGQLGHD---TNNLPNKRPQFISALEN--------YIVTQVSCGLSHSLALTNW 107



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +I  WG    GQLG+ + + R +   +K L    VR +  G   S+ +  +G   T    
Sbjct: 215 AIFGWGKNTFGQLGLNDLDSRCYPTQLKTLRSLGVRYISCGDDFSVFLTQEGGVFTCGLG 274

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAY 96
                       E +P  V  L  +KI Q A G  H LA V  +G+ Y
Sbjct: 275 TFGQLGHGTHGNEILPRMVFELMGSKITQIACGRKHTLAFVPSRGKVY 322


>gi|449270679|gb|EMC81336.1| putative E3 ubiquitin-protein ligase HERC3 [Columba livia]
          Length = 1050

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 154/320 (48%), Gaps = 52/320 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     + +  + + A GG H + + + G  Y  G N  GQ G + E  + +  G +  +
Sbjct: 25  PQVYGFIHDRNVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHDCEGSKPEQIGALAGQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+ +G +++WG     Q         ++VP  ++
Sbjct: 85  HIV------------HVACGESHSLALSDQGQLFSWGAGSDGQLGLTTIEDAVTVPRLIK 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N YGQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGQNSYGQLGLGKECPSQASPQRVKSLDGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQVSC 293
             +AAGG HS AL+  G V+GWG+   G+LG  D  D+ S   P  V LL  + +V +SC
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGKNSSGQLGLSDERDRES---PCHVKLLRSQKVVYISC 249

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +
Sbjct: 250 GEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLE 290

Query: 354 L-------VACGGRHTLAIV 366
           L       +ACG  HTLA V
Sbjct: 291 LMGSEVSQIACGRHHTLAFV 310



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 165/361 (45%), Gaps = 55/361 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY------KVRSVVAGSRNSLAICDDGKTK 60
           ++ WG    GQ GIG+N +     +V   + Y       V+ V  G  +S+ + +DG+  
Sbjct: 1   MLCWGYSSFGQPGIGSNIQ----VIVPEPQVYGFIHDRNVKEVACGGNHSVFLLEDGEVY 56

Query: 61  TENI--------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
           T  +              P Q+ AL+   IV  A G  H LA+ DQG+ ++WG    GQ 
Sbjct: 57  TCGLNTKGQLGHDCEGSKPEQIGALAGQHIVHVACGESHSLALSDQGQLFSWGAGSDGQ- 115

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
                     G     D V   R   KL    + QV+ G  H + L  +G  +TWGQ   
Sbjct: 116 ---------LGLTTIEDAVTVPRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQ--- 163

Query: 164 PGDIKQISV---------PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
                Q+ +         P RV+ L+ + L  +A G  H+ AL   GA++ WG N  GQL
Sbjct: 164 -NSYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQL 222

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G  D + R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  +
Sbjct: 223 GLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMN 280

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            ++ P++V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  
Sbjct: 281 DEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHTCNVKCPSP 340

Query: 332 V 332
           V
Sbjct: 341 V 341



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 118/237 (49%), Gaps = 18/237 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G   + S P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHDCEGSKPEQIGALAGQHIVHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLG-TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG T      + P  ++ L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDQGQLFSWGAGSDGQLGLTTIEDAVTVPRLIKKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  +G+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGQNSYGQLGLG-KECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+   G+LG   +     P  V +             R      ++CG  HT  + +
Sbjct: 215 GKNSSGQLGLSDERDRESPCHVKLL------------RSQKVVYISCGEEHTAVLTK 259



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  ++K L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLTTIEDAVTVPRLIKKLNQQTILQVSCGNWHCLALAADGQFFTWGQN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SYGQLGLGKECPSQASPQRVKSLDGIPLAQVAAGGAHSFALSLSGAVFGWGKNSSGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             ER  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDERDRESPCHVKLLRSQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTRGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ +  +RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGKNSSGQLGLSDERDRESPCHVKLLRSQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVSQIACGRHHTLAFVPSSGMIYAFGCGTR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|428178045|gb|EKX46922.1| hypothetical protein GUITHDRAFT_86569 [Guillardia theta CCMP2712]
          Length = 306

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 155/311 (49%), Gaps = 48/311 (15%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           + + +WG G  GQLG G+ + +    +V A   + VR V  G++++  + ++G+      
Sbjct: 6   SEVYSWGQGVLGQLGHGDEKTQRQPRLVVAFLGFNVRQVSCGNQHTAILMENGEVFTFGR 65

Query: 59  ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       T   + P+ V+AL    + Q A G  H  A+ D G+ Y WG  EYG+ 
Sbjct: 66  GNFGQLGQGASVTANVSTPALVSALQGKHVKQVACGWHHTCALIDNGQLYTWGSGEYGRL 125

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG 159
           G   E +               + +PKL+       V  VAAGG HS V+   G++ TWG
Sbjct: 126 GHGDEVR---------------QASPKLVESLQGKEVTFVAAGGFHSSVIIEGGNLLTWG 170

Query: 160 QPWP----PGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
             +      GD      P  V+G++Q     +A G  H L L +   +W WG+ E+G+LG
Sbjct: 171 GGYFGQLGHGDETDRKTPKMVKGVQQCIAHEVACGTHHTLMLTQSQEVWTWGSGEFGKLG 230

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            GD +  ++PI +  L G+ ++ I+ GG+HS ALT +G +Y WG G+ G+LG GD +  S
Sbjct: 231 IGDEEKHAEPIMITALQGVGVIHISTGGFHSAALTSEGVLYTWGGGDKGQLGHGDEN--S 288

Query: 274 KMVPQKVNLLA 284
           + +P  V +++
Sbjct: 289 QNIPVVVEVIS 299



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 28/291 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G  KT+  P  V A     + Q + G  H   + + G  + +G   +GQ G+        
Sbjct: 22  GDEKTQRQPRLVVAFLGFNVRQVSCGNQHTAILMENGEVFTFGRGNFGQLGQGAS----- 76

Query: 117 GRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                   V      P L+       V+QVA G  H+  L   G ++TWG         G
Sbjct: 77  --------VTANVSTPALVSALQGKHVKQVACGWHHTCALIDNGQLYTWGSGEYGRLGHG 128

Query: 166 DIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           D  + + P  V+ L+  +V  +A G FH+  + E G L  WG   +GQLG GD   R  P
Sbjct: 129 DEVRQASPKLVESLQGKEVTFVAAGGFHSSVIIEGGNLLTWGGGYFGQLGHGDETDRKTP 188

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V+G+      ++A G  H+  LT   EV+ WG GE G+LG GD +K ++  P  +  L
Sbjct: 189 KMVKGVQQCIAHEVACGTHHTLMLTQSQEVWTWGSGEFGKLGIGDEEKHAE--PIMITAL 246

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            G  ++ +S GG HS ALT +G ++++G GD G+LG+G + +   P+ V +
Sbjct: 247 QGVGVIHISTGGFHSAALTSEGVLYTWGGGDKGQLGHGDENSQNIPVVVEV 297



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 23/230 (10%)

Query: 149 LTREG-HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGAL 201
           ++REG  V++WGQ        GD K    P  V       V+ ++ G  H   L E+G +
Sbjct: 1   MSREGSEVYSWGQGVLGQLGHGDEKTQRQPRLVVAFLGFNVRQVSCGNQHTAILMENGEV 60

Query: 202 WAWGNNEYGQLGTGD--TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           + +G   +GQLG G   T   S P  V  L G  +  +A G  H+ AL D+G++Y WG G
Sbjct: 61  FTFGRGNFGQLGQGASVTANVSTPALVSALQGKHVKQVACGWHHTCALIDNGQLYTWGSG 120

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           E+GRLG GD  + +   P+ V  L G+++  V+ GG HS  +   G++ ++G G  G+LG
Sbjct: 121 EYGRLGHGDEVRQAS--PKLVESLQGKEVTFVAAGGFHSSVIIEGGNLLTWGGGYFGQLG 178

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           +G +     P  V            GV ++ IA  VACG  HTL + + Q
Sbjct: 179 HGDETDRKTPKMVK-----------GV-QQCIAHEVACGTHHTLMLTQSQ 216



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 36/115 (31%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +  +  +  WGSGE G+LGIG+ E+     ++ AL+   V                    
Sbjct: 212 LTQSQEVWTWGSGEFGKLGIGDEEKHAEPIMITALQGVGV-------------------- 251

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
                           +  + GG+H  A+  +G  Y WGG + GQ G   E   +
Sbjct: 252 ----------------IHISTGGFHSAALTSEGVLYTWGGGDKGQLGHGDENSQN 290


>gi|410900470|ref|XP_003963719.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Takifugu rubripes]
          Length = 1042

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 172/339 (50%), Gaps = 37/339 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDGKTKT-- 61
           ++ WG+   GQLG+G  +E E V   +  E +   KV  V  G ++++ + DDG   T  
Sbjct: 1   MLCWGNASYGQLGLGGIDE-EIVIEPRKCEFFHGKKVCDVGCGLKHTVFLLDDGTVYTCG 59

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P  V AL    IV  + G  H LA++D+G+ ++WG    GQ G  
Sbjct: 60  CNDLGQLGHEKPRKKPEHVVALDAQIIVAVSGGESHTLALNDKGQIFSWGLGSDGQLG-- 117

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-- 167
               ++  R+ R       +C   + + QVA G  HS  L++ G V++WGQ    G +  
Sbjct: 118 LNNFEECVRVPRN-----IKCLSDVQIAQVACGYRHSHALSKGGQVFSWGQN-QFGQLGL 171

Query: 168 ----KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                 IS P  +Q L+ +    ++ G  H+ A+   GA++ WG N++GQLG  DT  R 
Sbjct: 172 GMHGSSISTPQIIQSLQGIPFAQLSAGGAHSFAITLSGAVFGWGRNKFGQLGLNDTNDRW 231

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ L    ++ ++ G  H+ ALT +G V+ +G G +G+L  G N  + ++ P+KV 
Sbjct: 232 FPALLKSLRSQRVIYVSCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTNHEINPRKVF 289

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG 319
            L G  + Q+SCG  H++A T   G ++SFG G +G+LG
Sbjct: 290 ELMGNIVTQISCGRQHTLAFTPSSGKMYSFGLGGNGQLG 328



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++  WG  + GQLG+ +  +R +  ++K+L   +V  V  G  ++ A+  +G        
Sbjct: 210 AVFGWGRNKFGQLGLNDTNDRWFPALLKSLRSQRVIYVSCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGNEYGQCG 107
                    T  E  P +V  L    + Q + G  H LA     G+ Y++G    GQ G
Sbjct: 270 GYGQLGHNSTNHEINPRKVFELMGNIVTQISCGRQHTLAFTPSSGKMYSFGLGGNGQLG 328


>gi|427782019|gb|JAA56461.1| Putative hect e3 ubiquitin ligase hect e3 ubiquitin ligase
           [Rhipicephalus pulchellus]
          Length = 1480

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 187/391 (47%), Gaps = 51/391 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +I+ WG    GQLG     + +     +AL   +   VV G +   A+  DGK       
Sbjct: 582 TILGWGHNHRGQLGGVEGAKVKLPMPCEALSALRPIQVVGGEQTLFAVTADGKVYATGYG 641

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    T + + P+ + +L +  I +  +  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 642 AGGRLGIGGTDSVSCPTLLESLQHVFIKKVVVNSGGKHCLALSAEGEVYSWGEGDDGKLG 701

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
              +   +  R++       +    K +V  VA GG HS  +T  G ++TWG+       
Sbjct: 702 HGNKSSCERPRVI-------ESLRGKEVV-DVACGGAHSACITASGELYTWGKGRYGRLG 753

Query: 164 PGDIKQISVPVRVQGLE--QVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            GD      P +V+ L   +V+ +A G+     L + +D  +W+WG+ +YG+LG G +  
Sbjct: 754 HGDSDDQLRPKKVEALSGWRVRCVACGSGDAQTLCVTDDDCVWSWGDGDYGKLGRGGSDG 813

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ V  L G+ ++ +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 814 CKVPLRVDLLQGMGVIRVECGSQFSVALTASGSVYTWGKGDYHRLGHGTDDHVRR--PKR 871

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  L G+ ++ ++ G  H VA T  G ++++G  D G+LG G    T   +  P  + A 
Sbjct: 872 VAALQGKKVICIAVGSLHCVACTDTGEVYTWGDNDEGQLGDG----TVNAIHKPRLVAAL 927

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
           +  G  ++R      V+CG  HT+A   W T
Sbjct: 928 Q--GKKINR------VSCGSAHTVA---WST 947



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 121/274 (44%), Gaps = 40/274 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +++   + +WG G+DG+LG GN    E   V+++L   +V  V  G  +S  I   G+  
Sbjct: 683 LSAEGEVYSWGEGDDGKLGHGNKSSCERPRVIESLRGKEVVDVACGGAHSACITASGELY 742

Query: 61  T----------------ENIPSQVNALS--NTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           T                +  P +V ALS    + V    G    L V D    ++WG  +
Sbjct: 743 TWGKGRYGRLGHGDSDDQLRPKKVEALSGWRVRCVACGSGDAQTLCVTDDDCVWSWGDGD 802

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           YG+ G      D     LR D++        + V +V  G   SV LT  G V+TWG+  
Sbjct: 803 YGKLGR--GGSDGCKVPLRVDLL------QGMGVIRVECGSQFSVALTASGSVYTWGK-- 852

Query: 163 PPGDIKQ--------ISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GD  +        +  P RV  L+  +V  IAVG+ H +A  + G ++ WG+N+ GQL
Sbjct: 853 --GDYHRLGHGTDDHVRRPKRVAALQGKKVICIAVGSLHCVACTDTGEVYTWGDNDEGQL 910

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G G      +P  V  L G  +  ++ G  H+ A
Sbjct: 911 GDGTVNAIHKPRLVAALQGKKINRVSCGSAHTVA 944



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 93/215 (43%), Gaps = 68/215 (31%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
           G +  WG+N  GQLG  +      P+P + LS L                          
Sbjct: 581 GTILGWGHNHRGQLGGVEGAKVKLPMPCEALSALRPIQVVGGEQTLFAVTADGKVYATGY 640

Query: 233 -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                            TL++           + +GG H  AL+ +GEVY WG G+ G+L
Sbjct: 641 GAGGRLGIGGTDSVSCPTLLESLQHVFIKKVVVNSGGKHCLALSAEGEVYSWGEGDDGKL 700

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           G G  +KSS   P+ +  L G+++V V+CGG HS  +T  G ++++G+G +GRLG+G   
Sbjct: 701 GHG--NKSSCERPRVIESLRGKEVVDVACGGAHSACITASGELYTWGKGRYGRLGHGDSD 758

Query: 325 TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
              +P +V         A  G    W  + VACG 
Sbjct: 759 DQLRPKKV--------EALSG----WRVRCVACGS 781


>gi|256077780|ref|XP_002575178.1| ubiquitin ligase [Schistosoma mansoni]
 gi|360043621|emb|CCD81167.1| putative hect E3 ubiquitin ligase [Schistosoma mansoni]
          Length = 1175

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 120/410 (29%), Positives = 183/410 (44%), Gaps = 101/410 (24%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT 61
           ++T  + AWGS E+GQL +  N+  + + + KAL+                         
Sbjct: 4   SATEELFAWGSCEEGQLTLDKNDAYQ-ILIPKALD------------------------V 38

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
            N+P+         ++Q   G  H + +   G  Y+ G NE+ Q G        +G  L 
Sbjct: 39  RNLPT---------LIQITCGYTHTVFLTIDGEVYSCGCNEFQQLGH-----GQSGGQLA 84

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRV 176
           + + +      ++I   VA G  H+  +T  G ++TWG     Q    GD   + + VR 
Sbjct: 85  KVVALEHY---RII--SVACGAYHNAAITYNGLLFTWGCNSNGQLGREGDDTGVKL-VRA 138

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ--GLSGLTL 234
               +V  +++G  H L L +   ++A+G+N  GQLG G +  +S  IP Q   LSGL +
Sbjct: 139 LSDHKVVQVSLGVEHTLVLTDTARVFAFGSNLKGQLGLGYSSEQSVSIPQQILCLSGLPV 198

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLG---FGD---------------------ND 270
             I AGGWHS  LT  G +Y WG   +G+LG   FG                      +D
Sbjct: 199 RRIVAGGWHSFVLTVSGSLYAWGSNNYGQLGLSYFGSSPNDHQNELTLKCGSVGSTSVDD 258

Query: 271 KSSK--------------MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           + SK               +P  V  L G ++V ++CG TH+VALTRDG +F+FG G +G
Sbjct: 259 EQSKNRPFSPLDTSLSNVSIPTFVKTLRGCEVVYLACGETHTVALTRDGGVFTFGAGRYG 318

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +LG+          E  I I  PR   + +    +   +ACG  HTLA+V
Sbjct: 319 QLGHN---------ESTIGISVPRKITEFMGN--VVTQIACGRFHTLALV 357



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 115/280 (41%), Gaps = 60/280 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +  WG   +GQLG   ++    V +V+AL  +KV  V  G  ++L + D  +        
Sbjct: 113 LFTWGCNSNGQLGREGDDTG--VKLVRALSDHKVVQVSLGVEHTLVLTDTARVFAFGSNL 170

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ--- 105
                      ++ +IP Q+  LS   + +   GGWH   +   G  YAWG N YGQ   
Sbjct: 171 KGQLGLGYSSEQSVSIPQQILCLSGLPVRRIVAGGWHSFVLTVSGSLYAWGSNNYGQLGL 230

Query: 106 -----------------CGEEPERKDDTGRILRR-----DIVIPQRCAPKLI-------V 136
                            CG       D  +   R     D  +     P  +       V
Sbjct: 231 SYFGSSPNDHQNELTLKCGSVGSTSVDDEQSKNRPFSPLDTSLSNVSIPTFVKTLRGCEV 290

Query: 137 RQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGA 189
             +A G TH+V LTR+G V+T     +GQ         ISVP ++       V  IA G 
Sbjct: 291 VYLACGETHTVALTRDGGVFTFGAGRYGQLGHNESTIGISVPRKITEFMGNVVTQIACGR 350

Query: 190 FHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           FH LAL  + G L+A+G     QLG GDT+ R  P PV+G
Sbjct: 351 FHTLALVPKTGRLFAFGQGTNAQLGMGDTKNRLLPCPVKG 390


>gi|399056402|ref|ZP_10743734.1| Regulator of chromosome condensation (RCC1) repeat containing
           protein [Brevibacillus sp. CF112]
 gi|398046143|gb|EJL38781.1| Regulator of chromosome condensation (RCC1) repeat containing
           protein [Brevibacillus sp. CF112]
          Length = 326

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 150/288 (52%), Gaps = 24/288 (8%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NS     DG T  +N+P QV  L+N  + + A G    LA+   G  ++WG N YGQ G+
Sbjct: 60  NSYGQLGDGTTIQQNVPVQVKGLTN--VTRIAAGSDFSLALKADGTVWSWGNNSYGQLGD 117

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
                  T          P +      V ++AAG  H + L ++G VW WG         
Sbjct: 118 GKTSASYT----------PVQAVGLTDVIEIAAGTNHGLALKKDGTVWLWGNFLN----S 163

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             S P +V G+  VK IA G+  NLA+++DG +WAWG N+ GQLG  +T   S P  +  
Sbjct: 164 SYSKPFQVGGIADVKEIAAGSGFNLAVKKDGTVWAWGYNDSGQLGNNNTNNTSSPTKIGT 223

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+   +V +A G     AL  DG+VY WG   +G+LG  D   ++++ P +V  L   DI
Sbjct: 224 LA--NIVSVATGYESGYALDVDGKVYAWGYNGYGQLG--DGTSTNRLQPVQVTDLT--DI 277

Query: 289 VQVSCG--GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            ++S G    H +A  +DG I+++GRG++G++G G    + +P+++ +
Sbjct: 278 EEISSGSYAYHVLARKKDGTIYAWGRGNYGQVGNGTTSNSSRPVKITL 325



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 8/138 (5%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           V   E     A G+ H+L L+ DG +W+WG+N YGQLG G T  ++ P+ V+GL+ +T  
Sbjct: 29  VSAAENAVSSAAGSRHSLVLKGDGTVWSWGDNSYGQLGDGTTIQQNVPVQVKGLTNVT-- 86

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP-QKVNLLAGEDIVQVSCG 294
            IAAG   S AL  DG V+ WG   +G+L  GD   S+   P Q V L    D+++++ G
Sbjct: 87  RIAAGSDFSLALKADGTVWSWGNNSYGQL--GDGKTSASYTPVQAVGL---TDVIEIAAG 141

Query: 295 GTHSVALTRDGHIFSFGR 312
             H +AL +DG ++ +G 
Sbjct: 142 TNHGLALKKDGTVWLWGN 159


>gi|354485549|ref|XP_003504946.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like
           [Cricetulus griseus]
          Length = 887

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 138/263 (52%), Gaps = 17/263 (6%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P ++N     +++QAA G  H L +    R Y+ G N  GQ G++ E+  +         
Sbjct: 12  PRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPE------ 65

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGL 179
             P +    L +  V+ G  HS+ +  +G V+ WG         G+ K+I++ P+R++ L
Sbjct: 66  --PIQALGTLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEFKEINLMPMRIKTL 123

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
             +K+I V  G +H+LAL EDG +++WG N  GQLG G  +  ++ P  V  L G+ L  
Sbjct: 124 GGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQASPQKVTSLEGIPLAQ 183

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           +AAGG HS AL+  G  YGWG    G+L   G+N       P  ++ L    ++ +SCG 
Sbjct: 184 VAAGGSHSFALSLTGTSYGWGSNSVGQLALSGENSTVQISKPHSIDALKNLGVIYISCGY 243

Query: 296 THSVALTRDGHIFSFGRGDHGRL 318
            H+  LT+DG +F+FG    G+L
Sbjct: 244 EHTAVLTKDGQVFTFGDNSSGQL 266



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 14/195 (7%)

Query: 173 PVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P R+ G + ++L+  A G  H+L L  +  +++ G+N  GQLG    Q   QP P+Q L 
Sbjct: 12  PRRLNGRDGLELLQAASGERHSLLLFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALG 71

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            L +  ++ G  HS A+   G V+ WG G  G+LG G+  K   ++P ++  L G  I+Q
Sbjct: 72  TLDIDLVSCGKEHSIAVCHKGRVFAWGAGSEGQLGIGEF-KEINLMPMRIKTLGGIKIIQ 130

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           VSCG  HS+AL+ DG +FS+G+   G+LG G + ++          P    + +G+    
Sbjct: 131 VSCGHYHSLALSEDGQVFSWGKNSQGQLGLGMQSSSQAS-------PQKVTSLEGIP--- 180

Query: 351 IAKLVACGGRHTLAI 365
           +A+ VA GG H+ A+
Sbjct: 181 LAQ-VAAGGSHSFAL 194



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 159/388 (40%), Gaps = 67/388 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S   + + G    GQLG    +  E    ++AL    +  V  G  +S+A+C  G+  
Sbjct: 36  LFSNHRVYSCGDNSLGQLGQKREQNTEQPEPIQALGTLDIDLVSCGKEHSIAVCHKGRVF 95

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +   +P ++  L   KI+Q + G +H LA+ + G+ ++WG N  
Sbjct: 96  AWGAGSEGQLGIGEFKEINLMPMRIKTLGGIKIIQVSCGHYHSLALSEDGQVFSWGKNSQ 155

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW--- 158
           GQ G   +               PQ+      + + QVAAGG+HS  L+  G  + W   
Sbjct: 156 GQLGLGMQSSSQAS---------PQKVTSLEGIPLAQVAAGGSHSFALSLTGTSYGWGSN 206

Query: 159 --GQPWPPGD--IKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GQ    G+    QIS P  +  L+   V  I+ G  H   L +DG ++ +G+N  GQL
Sbjct: 207 SVGQLALSGENSTVQISKPHSIDALKNLGVIYISCGYEHTAVLTKDGQVFTFGDNSSGQL 266

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG---DN 269
                  R  P  V+G+ G  +  I  G +H+ A       Y +  G+   LG G    +
Sbjct: 267 QNNPRGKRRGPQLVEGIKG-QVSKIECGSYHTIA-------YVYTTGQVVSLGHGPRPTS 318

Query: 270 DKSSKMVPQK----VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
           + + +  P +    + LL+  D+V V           +D  IF+   G +       +V+
Sbjct: 319 NPTHQKAPAESSDIICLLSAADLVDVK---------VKD--IFA---GAYANFATTHRVS 364

Query: 326 TGQPMEVPINI-PAPRNAGDGVDRRWIA 352
             +   V + I P        + ++WIA
Sbjct: 365 HARSKSVSMKILPEISRINQSLAKKWIA 392


>gi|195133162|ref|XP_002011008.1| GI16306 [Drosophila mojavensis]
 gi|193906983|gb|EDW05850.1| GI16306 [Drosophila mojavensis]
          Length = 5077

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 175/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4214 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4273

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+   G  YAWG  E G+ 
Sbjct: 4274 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTDGEVYAWGEGEDGKL 4333

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 4334 GHGNRMSYDRPKLVEH--------LNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRL 4385

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4386 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4445

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY WG+G+  RLG G  +   +  P+
Sbjct: 4446 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVEHVRR--PK 4503

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G      +P  V      
Sbjct: 4504 KVAALQGKKIISIATGSLHCVACSDAGEVFTWGDNDEGQLGDGTVTAIQRPRLVA----- 4558

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4559 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 4585



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 176/385 (45%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +       +   +   +  GS++   +  DGK       
Sbjct: 3062 TVMVWGLNDKEQLGGLKGSKVKVPTFSPTISRLRPIHIAGGSKSLFVVSQDGKVYACGEG 3121

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3122 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3181

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R +A G +HS  ++ +G ++TWG        
Sbjct: 3182 HGNRSTLDKPRL------VEALRAKK--IRDIACGSSHSAAISSQGELYTWGLGEYGRLG 3233

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   ++I V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3234 HGDNATQLKPKLVAALSGRRVIQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3293

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             S P  ++ LSG+ ++ I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3294 SSTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3351

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3352 IAGLRGHRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3404

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D   I   VACG  H++A
Sbjct: 3405 ----IGLD-AVIVNRVACGSSHSMA 3424



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 25/236 (10%)

Query: 141  AGGTHSV-VLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFH 191
            AGG+ S+ V++++G V+  G+        G    + +P ++  L Q  VK +AV  G  H
Sbjct: 3100 AGGSKSLFVVSQDGKVYACGEGTNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKH 3159

Query: 192  NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
             LAL  DG +++WG  E G+LG G+     +P  V+ L    + DIA G  HS A++  G
Sbjct: 3160 ALALTLDGKVFSWGEGEDGKLGHGNRSTLDKPRLVEALRAKKIRDIACGSSHSAAISSQG 3219

Query: 252  EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFS 309
            E+Y WG GE+GRLG GDN  ++++ P+ V  L+G  ++QV+CG     ++ALT DG +FS
Sbjct: 3220 ELYTWGLGEYGRLGHGDN--ATQLKPKLVAALSGRRVIQVACGSRDAQTLALTEDGAVFS 3277

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +G GD G+LG G    +  P E+       R +G GV +      + CG + +LA+
Sbjct: 3278 WGDGDFGKLGRGGSEGSSTPHEI------ERLSGIGVIQ------IECGAQFSLAL 3321



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 145/327 (44%), Gaps = 30/327 (9%)

Query: 38  YKVRSVVAGSRNSLAICDDGK------TKTENIPSQVN--ALSNTKIVQAA--IGGWHCL 87
           ++++ V       L +  +GK       K E  P Q++   ++N   +  A    G H L
Sbjct: 600 FQLQQVACSEDVVLLLSKEGKLYNWHIAKPEAEPQQLDFAEIANETFISIAAHCEGRHFL 659

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           AVD    AY+WG  +  + G      D   R L   I    R     +V+ V  G ++S 
Sbjct: 660 AVDSNFNAYSWGVGDSRRLGH----GDCHARELPTKIESLVR-----LVKSVYCGCSYSA 710

Query: 148 VLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGA--FHNLALQEDG 199
            +T  G+++TWG+        G      +P  V  L+  QV  +A+G+   H L L  +G
Sbjct: 711 AITLGGNLYTWGRGTYGRLGHGTSDDQCLPAMVMALKDHQVVDVALGSGDAHTLCLTSEG 770

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            ++AWG+ +YG+LG G       P  +  L  +    + AG   S AL+ +G++Y WG+ 
Sbjct: 771 LVFAWGDGDYGKLGNGSCNSSLLPQLIDCLPRVQ--RVFAGAQFSLALSCEGQLYSWGKA 828

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
                   + +     VP+ +  L  + IV V+ G  H +AL+  G IF +GR D+ ++ 
Sbjct: 829 SCLGHQLVERNVQGCSVPRLITGLQHKRIVDVAVGVAHCLALSSSGEIFGWGRNDNQQIC 888

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGV 346
               V +   +  PI +  P     G+
Sbjct: 889 PA-SVCSEPLLRQPIQVTLPTLPASGI 914



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 13/195 (6%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF-- 190
           K  ++QVA      ++L++EG ++ W    P  + +Q+        +     I++ A   
Sbjct: 599 KFQLQQVACSEDVVLLLSKEGKLYNWHIAKPEAEPQQLDF----AEIANETFISIAAHCE 654

Query: 191 --HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+  +   ++WG  +  +LG GD   R  P  ++ L  L +  +  G  +S A+T
Sbjct: 655 GRHFLAVDSNFNAYSWGVGDSRRLGHGDCHARELPTKIESLVRL-VKSVYCGCSYSAAIT 713

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGH 306
             G +Y WGRG +GRLG G +D   + +P  V  L    +V V+ G    H++ LT +G 
Sbjct: 714 LGGNLYTWGRGTYGRLGHGTSD--DQCLPAMVMALKDHQVVDVALGSGDAHTLCLTSEGL 771

Query: 307 IFSFGRGDHGRLGYG 321
           +F++G GD+G+LG G
Sbjct: 772 VFAWGDGDYGKLGNG 786



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 44/272 (16%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S  +  +WG G+  +LG G+   RE    +++L    V+SV  G   S AI   G   T 
Sbjct: 663 SNFNAYSWGVGDSRRLGHGDCHARELPTKIESLVRL-VKSVYCGCSYSAAITLGGNLYTW 721

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
                          + +P+ V AL + ++V  A+G    H L +  +G  +AWG  +YG
Sbjct: 722 GRGTYGRLGHGTSDDQCLPAMVMALKDHQVVDVALGSGDAHTLCLTSEGLVFAWGDGDYG 781

Query: 105 QCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           + G                 ++PQ   C P+  V++V AG   S+ L+ EG +++WG+  
Sbjct: 782 KLGNGSCNSS----------LLPQLIDCLPR--VQRVFAGAQFSLALSCEGQLYSWGKAS 829

Query: 163 PPG------DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
             G      +++  SVP  + GL+  ++  +AVG  H LAL   G ++ WG N+  Q+  
Sbjct: 830 CLGHQLVERNVQGCSVPRLITGLQHKRIVDVAVGVAHCLALSSSGEIFGWGRNDNQQICP 889

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                 S+P+  Q +  +TL  + A G   TA
Sbjct: 890 ASVC--SEPLLRQPIQ-VTLPTLPASGIACTA 918



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 100/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3215 ISSQGELYTWGLGEYGRLGHGDNATQLKPKLVAALSGRRVIQVACGSRDAQTLALTEDGA 3274

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 + P ++  LS   ++Q   G    LA+   G  + WG  +
Sbjct: 3275 VFSWGDGDFGKLGRGGSEGSSTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGD 3334

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 3335 YYRLGHGGDQHVRKPQPIAGLRGHRVI-----------HVAVGALHCLAVTDAGQVYAW- 3382

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 3383 ---------------------------------------------GDNDHGQQGSGNTFV 3397

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3398 NKKPALVIGLDAVIVNRVACGSSHSMA 3424



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 20/123 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG G+ G+LG G+        ++  L   +V+ V AG++ SLA+  +G+  
Sbjct: 766 LTSEGLVFAWGDGDYGKLGNGSCNSSLLPQLIDCLP--RVQRVFAGAQFSLALSCEGQLY 823

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           +                   ++P  +  L + +IV  A+G  HCLA+   G  + WG N+
Sbjct: 824 SWGKASCLGHQLVERNVQGCSVPRLITGLQHKRIVDVAVGVAHCLALSSSGEIFGWGRND 883

Query: 103 YGQ 105
             Q
Sbjct: 884 NQQ 886


>gi|444910459|ref|ZP_21230644.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444719396|gb|ELW60193.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 693

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 164/348 (47%), Gaps = 40/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI- 64
           ++ AWG    GQLG G    R     V+  +   V ++ AG  +SLA+  DG  +   + 
Sbjct: 366 TVWAWGYNSLGQLGDGTTIPRP--SPVQVPDLTDVVALSAGDSHSLALRTDGTVRAWGVN 423

Query: 65  ---------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P QV  L  T +V  + GG H LA+   G  +AWG N  GQ G+ 
Sbjct: 424 YSGQLGDGTTTHRLSPVQVPDL--TDVVALSAGGNHTLALRTNGTVWAWGSNSDGQLGD- 480

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R  + P +      V  ++AG  HS+ +  +G VW WG         G
Sbjct: 481 -------GTTTPR--LSPVQMLGLTNVVALSAGYYHSLAVHTDGTVWAWGSNSDGQLGDG 531

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV+V GL  V  ++ G  H+LAL+ DG +WAWG+N   QLG G T PR  P+ 
Sbjct: 532 TTTHRLTPVQVPGLTDVVALSAGDSHSLALRTDGTVWAWGSNSSSQLGDGTTTPRGSPVQ 591

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   +V ++AGG HS AL  DG V+ WG   +G+LG  D   + ++ P  V+ L G
Sbjct: 592 VPGLT--DVVALSAGGAHSLALRTDGTVWAWGSNYYGQLG--DGTTTPRLFPVLVSNLTG 647

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
              +    G  HS+AL  DG   ++G    G+LG G       P++VP
Sbjct: 648 TSNLYAGAG--HSLALRTDGTGRAWGNNYGGQLGDGTSAFFLHPVQVP 693



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 165/346 (47%), Gaps = 36/346 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWG    GQLG G    R     V  L    V ++ AG  +SLA+  DG        
Sbjct: 266 TVWAWGYNSYGQLGDGTTTPRLSPVQVPGLT--NVVALSAGYSHSLALRTDGTVWAWGYN 323

Query: 62  ------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   IP+Q    +       +V  + G  H LA+   G  +AWG N  GQ G+   
Sbjct: 324 YNGQLGNGIPTQRSPSIPVFGLIDVVALSAGYSHSLALRTDGTVWAWGYNSLGQLGD--- 380

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                G  + R    P +      V  ++AG +HS+ L  +G V  WG  +      G  
Sbjct: 381 -----GTTIPRPS--PVQVPDLTDVVALSAGDSHSLALRTDGTVRAWGVNYSGQLGDGTT 433

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                PV+V  L  V  ++ G  H LAL+ +G +WAWG+N  GQLG G T PR  P+ + 
Sbjct: 434 THRLSPVQVPDLTDVVALSAGGNHTLALRTNGTVWAWGSNSDGQLGDGTTTPRLSPVQML 493

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+   +V ++AG +HS A+  DG V+ WG    G+LG  D   + ++ P +V  L   D
Sbjct: 494 GLT--NVVALSAGYYHSLAVHTDGTVWAWGSNSDGQLG--DGTTTHRLTPVQVPGL--TD 547

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +V +S G +HS+AL  DG ++++G     +LG G     G P++VP
Sbjct: 548 VVALSAGDSHSLALRTDGTVWAWGSNSSSQLGDGTTTPRGSPVQVP 593



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 177/380 (46%), Gaps = 54/380 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G    R     V  L    V ++ +G  +SLA+  DG        
Sbjct: 116 TVWAWGYNFYGQLGDGTTTPRLAPVQVPGLT--DVVALSSGIYHSLALRTDGTVWAWGDN 173

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T T  + P QV  L  T +V  + GG+H LAV   G  +AWG N  GQ G+ 
Sbjct: 174 ASGQLGDGTATRRLSPVQVPGL--TDVVALSAGGYHSLAVRTDGTVWAWGSNFSGQLGD- 230

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R  + P + +    V  ++A  ++++ L  +G VW WG         G
Sbjct: 231 -------GTATPR--LSPVQVSGLTNVVALSADDSYTLALRTDGTVWAWGYNSYGQLGDG 281

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV+V GL  V  ++ G  H+LAL+ DG +WAWG N  GQLG G    RS  IP
Sbjct: 282 TTTPRLSPVQVPGLTNVVALSAGYSHSLALRTDGTVWAWGYNYNGQLGNGIPTQRSPSIP 341

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL  + +V ++AG  HS AL  DG V+ WG    G+LG    D ++   P  V +   
Sbjct: 342 VFGL--IDVVALSAGYSHSLALRTDGTVWAWGYNSLGQLG----DGTTIPRPSPVQVPDL 395

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
            D+V +S G +HS+AL  DG + ++G    G+LG G       P++VP            
Sbjct: 396 TDVVALSAGDSHSLALRTDGTVRAWGVNYSGQLGDGTTTHRLSPVQVP------------ 443

Query: 346 VDRRWIAKLVACGGRHTLAI 365
            D   +  L A GG HTLA+
Sbjct: 444 -DLTDVVALSA-GGNHTLAL 461



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 168/347 (48%), Gaps = 40/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G    R     V  L    V ++ AG  +SLA+  DG        
Sbjct: 166 TVWAWGDNASGQLGDGTATRRLSPVQVPGLT--DVVALSAGGYHSLAVRTDGTVWAWGSN 223

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T T  + P QV+ L+N  +V  +    + LA+   G  +AWG N YGQ G+ 
Sbjct: 224 FSGQLGDGTATPRLSPVQVSGLTN--VVALSADDSYTLALRTDGTVWAWGYNSYGQLGD- 280

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                  G    R  + P +      V  ++AG +HS+ L  +G VW WG  +      G
Sbjct: 281 -------GTTTPR--LSPVQVPGLTNVVALSAGYSHSLALRTDGTVWAWGYNYNGQLGNG 331

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              Q S  + V GL  V  ++ G  H+LAL+ DG +WAWG N  GQLG G T PR  P+ 
Sbjct: 332 IPTQRSPSIPVFGLIDVVALSAGYSHSLALRTDGTVWAWGYNSLGQLGDGTTIPRPSPVQ 391

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L+   +V ++AG  HS AL  DG V  WG    G+L  GD   + ++ P +V  L  
Sbjct: 392 VPDLT--DVVALSAGDSHSLALRTDGTVRAWGVNYSGQL--GDGTTTHRLSPVQVPDL-- 445

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            D+V +S GG H++AL  +G ++++G    G+LG G       P+++
Sbjct: 446 TDVVALSAGGNHTLALRTNGTVWAWGSNSDGQLGDGTTTPRLSPVQM 492



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 164/349 (46%), Gaps = 40/349 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG   +GQLG G   +R     V  L    V ++ AG  +SLA+  DG        
Sbjct: 316 TVWAWGYNYNGQLGNGIPTQRSPSIPVFGL--IDVVALSAGYSHSLALRTDGTVWAWGYN 373

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    T   PS V     T +V  + G  H LA+   G   AWG N  GQ G+   
Sbjct: 374 SLGQLGDGTTIPRPSPVQVPDLTDVVALSAGDSHSLALRTDGTVRAWGVNYSGQLGD--- 430

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                G    R  + P +      V  ++AGG H++ L   G VW WG         G  
Sbjct: 431 -----GTTTHR--LSPVQVPDLTDVVALSAGGNHTLALRTNGTVWAWGSNSDGQLGDGTT 483

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                PV++ GL  V  ++ G +H+LA+  DG +WAWG+N  GQLG G T  R  P+ V 
Sbjct: 484 TPRLSPVQMLGLTNVVALSAGYYHSLAVHTDGTVWAWGSNSDGQLGDGTTTHRLTPVQVP 543

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+   +V ++AG  HS AL  DG V+ WG     +LG  D   + +  P +V  L   D
Sbjct: 544 GLT--DVVALSAGDSHSLALRTDGTVWAWGSNSSSQLG--DGTTTPRGSPVQVPGL--TD 597

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           +V +S GG HS+AL  DG ++++G   +G+LG G    T  P   P+ +
Sbjct: 598 VVALSAGGAHSLALRTDGTVWAWGSNYYGQLGDG----TTTPRLFPVLV 642



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 173/349 (49%), Gaps = 42/349 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWGS   GQLG G    R     V  L    V ++ AG+ + LA+  DG        
Sbjct: 16  TVWAWGSNSSGQLGDGTTTPRGSPVQVPGLT--DVVALSAGNHHCLALRTDGTVWAWGSN 73

Query: 59  --------TKTENIPS-QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T T  + S QV  L  T +V  + G  + LA+   G  +AWG N YGQ G+ 
Sbjct: 74  SSGQLGDGTTTPRLSSVQVPGL--TDVVALSAGSSYTLALRTDGTVWAWGYNFYGQLGD- 130

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                  G    R  + P +      V  +++G  HS+ L  +G VW WG         G
Sbjct: 131 -------GTTTPR--LAPVQVPGLTDVVALSSGIYHSLALRTDGTVWAWGDNASGQLGDG 181

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              +   PV+V GL  V  ++ G +H+LA++ DG +WAWG+N  GQLG G   PR  P+ 
Sbjct: 182 TATRRLSPVQVPGLTDVVALSAGGYHSLAVRTDGTVWAWGSNFSGQLGDGTATPRLSPVQ 241

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   +V ++A   ++ AL  DG V+ WG   +G+L  GD   + ++ P +V  L  
Sbjct: 242 VSGLT--NVVALSADDSYTLALRTDGTVWAWGYNSYGQL--GDGTTTPRLSPVQVPGL-- 295

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            ++V +S G +HS+AL  DG ++++G   +G+LG G  + T +   +P+
Sbjct: 296 TNVVALSAGYSHSLALRTDGTVWAWGYNYNGQLGNG--IPTQRSPSIPV 342



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 130/257 (50%), Gaps = 20/257 (7%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  H LA+   G  +AWG N  GQ G+       +          P +      V  +
Sbjct: 2   AAGYSHSLALHTDGTVWAWGSNSSGQLGDGTTTPRGS----------PVQVPGLTDVVAL 51

Query: 140 AAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVP----VRVQGLEQVKLIAVGAFHNLAL 195
           +AG  H + L  +G VW WG           + P    V+V GL  V  ++ G+ + LAL
Sbjct: 52  SAGNHHCLALRTDGTVWAWGSNSSGQLGDGTTTPRLSSVQVPGLTDVVALSAGSSYTLAL 111

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + DG +WAWG N YGQLG G T PR  P+ V GL+   +V +++G +HS AL  DG V+ 
Sbjct: 112 RTDGTVWAWGYNFYGQLGDGTTTPRLAPVQVPGLT--DVVALSSGIYHSLALRTDGTVWA 169

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+L  GD   + ++ P +V  L   D+V +S GG HS+A+  DG ++++G    
Sbjct: 170 WGDNASGQL--GDGTATRRLSPVQVPGL--TDVVALSAGGYHSLAVRTDGTVWAWGSNFS 225

Query: 316 GRLGYGRKVTTGQPMEV 332
           G+LG G       P++V
Sbjct: 226 GQLGDGTATPRLSPVQV 242



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 110/199 (55%), Gaps = 10/199 (5%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           +AAG +HS+ L  +G VW WG         G       PV+V GL  V  ++ G  H LA
Sbjct: 1   MAAGYSHSLALHTDGTVWAWGSNSSGQLGDGTTTPRGSPVQVPGLTDVVALSAGNHHCLA 60

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L+ DG +WAWG+N  GQLG G T PR   + V GL+   +V ++AG  ++ AL  DG V+
Sbjct: 61  LRTDGTVWAWGSNSSGQLGDGTTTPRLSSVQVPGLT--DVVALSAGSSYTLALRTDGTVW 118

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG   +G+L  GD   + ++ P +V  L   D+V +S G  HS+AL  DG ++++G   
Sbjct: 119 AWGYNFYGQL--GDGTTTPRLAPVQVPGL--TDVVALSSGIYHSLALRTDGTVWAWGDNA 174

Query: 315 HGRLGYGRKVTTGQPMEVP 333
            G+LG G       P++VP
Sbjct: 175 SGQLGDGTATRRLSPVQVP 193


>gi|428181106|gb|EKX49971.1| hypothetical protein GUITHDRAFT_161991 [Guillardia theta CCMP2712]
          Length = 658

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 165/363 (45%), Gaps = 55/363 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           I +WG GE GQLG  +        ++  L   +V+ V  G   S A+ + G+  T     
Sbjct: 130 IRSWGRGESGQLGHASFSHSSTPSIIDELASQRVKEVACGVAFSAALMEGGQLYTWGCNR 189

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        IP  + ++++  +   A G  H + +      Y WG N YGQ G   
Sbjct: 190 YGQLGQGDRTSSAIPRMLPSMNHRHVHLMACGAAHIVVLTTSRDVYTWGNNSYGQLGHGF 249

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
            +K      L+   V   R    L ++Q+ AG  HS V+T  G ++TWG+        GD
Sbjct: 250 RKK----HCLQPKSV---RVMSGLDIKQIVAGENHSCVMTSFGDIYTWGRGDFGQLGHGD 302

Query: 167 IKQISVPVRVQGLE---QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQ-PRS 221
           ++   +P  +  L+   Q  LI  GA   +A+   GA+++WG N +GQLG G D    +S
Sbjct: 303 MESKDIPTLLSPLDPKTQASLIVSGADFIMAMTYSGAVYSWGRNCFGQLGHGVDMHYSKS 362

Query: 222 QPIPVQGLS--------------GLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGF 266
              P   +S               ++L  I+ G  H  A+T+  + ++ WGRGEHG+LG 
Sbjct: 363 NRFPSDVISPKIISFFAASEEHDAISLSSISCGSHHVLAITEKKDTLFAWGRGEHGQLGL 422

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR--------DGHIFSFGRGDHGRL 318
              D S + +PQ+V  + G  ++  +C   HSV +          D  +FS+GRG  G+L
Sbjct: 423 DPRDTSFRPIPQEVKKMKGMIVLAAACSENHSVVVATMPGSGPKGDMKVFSWGRGSFGQL 482

Query: 319 GYG 321
           GYG
Sbjct: 483 GYG 485



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 166/347 (47%), Gaps = 29/347 (8%)

Query: 39  KVRSVVAGSRNSL---AICDDGKTKTENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
           + R+ +A S+  L   A    G+  T N   P +V +L+   I     G  H LA+D  G
Sbjct: 69  RARTEIAKSKLHLTAGATRIHGRFSTYNSQRPQEVVSLAGLSIKLITCGSDHVLALDASG 128

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           +  +WG  E GQ G        T  I+  D +  QR      V++VA G   S  L   G
Sbjct: 129 KIRSWGRGESGQLGHASFSHSSTPSII--DELASQR------VKEVACGVAFSAALMEGG 180

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNN 207
            ++TWG         GD    ++P  +  +    V L+A GA H + L     ++ WGNN
Sbjct: 181 QLYTWGCNRYGQLGQGDRTSSAIPRMLPSMNHRHVHLMACGAAHIVVLTTSRDVYTWGNN 240

Query: 208 EYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
            YGQLG G  +    QP  V+ +SGL +  I AG  HS  +T  G++Y WGRG+ G+LG 
Sbjct: 241 SYGQLGHGFRKKHCLQPKSVRVMSGLDIKQIVAGENHSCVMTSFGDIYTWGRGDFGQLGH 300

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV-ALTRDGHIFSFGRGDHGRLGYGRKVT 325
           GD +  SK +P  ++ L  +    +   G   + A+T  G ++S+GR   G+LG+G  + 
Sbjct: 301 GDME--SKDIPTLLSPLDPKTQASLIVSGADFIMAMTYSGAVYSWGRNCFGQLGHGVDMH 358

Query: 326 TGQPMEVPINIPAPR-----NAGDGVDRRWIAKLVACGGRHTLAIVE 367
             +    P ++ +P+      A +  D   ++  ++CG  H LAI E
Sbjct: 359 YSKSNRFPSDVISPKIISFFAASEEHDAISLSS-ISCGSHHVLAITE 404



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 169/394 (42%), Gaps = 68/394 (17%)

Query: 16  GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------------- 61
           G+    N++  + V  +  L    ++ +  GS + LA+   GK ++              
Sbjct: 90  GRFSTYNSQRPQEVVSLAGLS---IKLITCGSDHVLALDASGKIRSWGRGESGQLGHASF 146

Query: 62  --ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
              + PS ++ L++ ++ + A G     A+ + G+ Y WG N YGQ G+           
Sbjct: 147 SHSSTPSIIDELASQRVKEVACGVAFSAALMEGGQLYTWGCNRYGQLGQGD--------- 197

Query: 120 LRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQPWPPGDI------KQI 170
            R    IP R  P +  R V   A G  H VVLT    V+TWG     G +      K  
Sbjct: 198 -RTSSAIP-RMLPSMNHRHVHLMACGAAHIVVLTTSRDVYTWGNN-SYGQLGHGFRKKHC 254

Query: 171 SVP--VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             P  VRV     +K I  G  H+  +   G ++ WG  ++GQLG GD + +  P  +  
Sbjct: 255 LQPKSVRVMSGLDIKQIVAGENHSCVMTSFGDIYTWGRGDFGQLGHGDMESKDIPTLLSP 314

Query: 229 LSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK--------MVPQK 279
           L   T    I +G     A+T  G VY WGR   G+LG G +   SK        + P+ 
Sbjct: 315 LDPKTQASLIVSGADFIMAMTYSGAVYSWGRNCFGQLGHGVDMHYSKSNRFPSDVISPKI 374

Query: 280 VNLLAGED------IVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++  A  +      +  +SCG  H +A+T +   +F++GRG+HG+LG   + T+ +P   
Sbjct: 375 ISFFAASEEHDAISLSSISCGSHHVLAITEKKDTLFAWGRGEHGQLGLDPRDTSFRP--- 431

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
              IP       G+    I    AC   H++ + 
Sbjct: 432 ---IPQEVKKMKGM----IVLAAACSENHSVVVA 458



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 117/299 (39%), Gaps = 73/299 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV----VKALEPYKVRSVVAGSRNSLAICD- 55
           + ++  +  WG+   GQLG G    R+  C+    V+ +    ++ +VAG  +S  +   
Sbjct: 228 LTTSRDVYTWGNNSYGQLGHGF---RKKHCLQPKSVRVMSGLDIKQIVAGENHSCVMTSF 284

Query: 56  ---------------DGKTKTENIPSQVNALS-NTKIVQAAIGGWHCLAVDDQGRAYAWG 99
                           G  ++++IP+ ++ L   T+      G    +A+   G  Y+WG
Sbjct: 285 GDIYTWGRGDFGQLGHGDMESKDIPTLLSPLDPKTQASLIVSGADFIMAMTYSGAVYSWG 344

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            N +GQ G   +           D++ P+      I+   AA   H  +           
Sbjct: 345 RNCFGQLGHGVDMHYSKSNRFPSDVISPK------IISFFAASEEHDAI----------- 387

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQ 218
                                 +  I+ G+ H LA+ E    L+AWG  E+GQLG     
Sbjct: 388 ---------------------SLSSISCGSHHVLAITEKKDTLFAWGRGEHGQLGLDPRD 426

Query: 219 PRSQPIP--VQGLSGLTLVDIAAGGWHSTALTD--------DGEVYGWGRGEHGRLGFG 267
              +PIP  V+ + G+ ++  A    HS  +          D +V+ WGRG  G+LG+G
Sbjct: 427 TSFRPIPQEVKKMKGMIVLAAACSENHSVVVATMPGSGPKGDMKVFSWGRGSFGQLGYG 485


>gi|63995563|gb|AAY41038.1| unknown [Homo sapiens]
          Length = 382

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 153/312 (49%), Gaps = 36/312 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG   +D+  +  P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL--SDEKDRESPCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+         M   +N   PR   + +        
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGH-------DSMNDEVN---PRRVLELMGSE--VTQ 298

Query: 355 VACGGRHTLAIV 366
           +ACG +HTLA V
Sbjct: 299 IACGRQHTLAFV 310



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 20/255 (7%)

Query: 120 LRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVR 175
           L+  +  PQ C       V++VA GG HSV L  +G V+T G       G  ++ + P +
Sbjct: 18  LQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQ 77

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGL 232
           +  L  + +  +A G  H+LAL + G L++WG    GQLG   T+   + P  +Q L+  
Sbjct: 78  IGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQ 137

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+
Sbjct: 138 TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVA 196

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            GG HS AL+  G +F +G  + G+LG   +     P  V +             R    
Sbjct: 197 AGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL------------LRTQKV 244

Query: 353 KLVACGGRHTLAIVE 367
             ++CG  HT  + +
Sbjct: 245 VYISCGEEHTAVLTK 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|307106699|gb|EFN54944.1| hypothetical protein CHLNCDRAFT_134694 [Chlorella variabilis]
          Length = 434

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 176/359 (49%), Gaps = 47/359 (13%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------- 55
           S + +++WG GEDGQLG G+ E+R+    V +L      SV  G+  S+A+         
Sbjct: 27  SGSMVLSWGRGEDGQLGHGDAEDRQEPQAVFSLLHRGATSVHCGAEYSMAVAGGDKQVYS 86

Query: 56  ----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      G  K   IP  + AL+  ++   A G  H L    +G+ +A+G N+ GQ
Sbjct: 87  WGWGDFGRLGTGDVKDVFIPCPLPALAGRRVASVACGDTHTLVATAEGQLFAFGRNQNGQ 146

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAP---KLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           CG         G I  +D + PQ       K +V  VA G  HS+ +T EG V+ WG  W
Sbjct: 147 CG--------LGSI--QDCLEPQLVTALQGKEVV-AVACGAEHSMCVTSEGEVYCWG--W 193

Query: 163 P------PGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                   G+ +   +P   +GLE VK+  V  G  H++A+ E GA++ WG   Y QL  
Sbjct: 194 GRYGNIGDGESQDRHLPTLAKGLEGVKVAQVNCGWRHSIAVDEGGAMYTWGWGAYAQLMQ 253

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           GD +    P  V+ +  +  V   AGGW H+ A    G ++  G  + G+ G G N+   
Sbjct: 254 GDRKDHYVPKRVEAVQQVATV---AGGWRHTMAADSQGRLFASGWNKFGQCGVGHNEDVV 310

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++  Q+V  LAGE +VQV  G  H++A+T  G  FS+GR  +G+LG+     +  P+E+
Sbjct: 311 RV--QQVEALAGERVVQVKSGWKHTMAVTHTGKFFSWGRNVNGQLGHSGMQDSNSPVEL 367



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 145/317 (45%), Gaps = 38/317 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----KTE 62
           + +WG G+ G+LG G+ ++    C + AL   +V SV  G  ++L    +G+     + +
Sbjct: 84  VYSWGWGDFGRLGTGDVKDVFIPCPLPALAGRRVASVACGDTHTLVATAEGQLFAFGRNQ 143

Query: 63  N------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           N             P  V AL   ++V  A G  H + V  +G  Y WG   YG  G+  
Sbjct: 144 NGQCGLGSIQDCLEPQLVTALQGKEVVAVACGAEHSMCVTSEGEVYCWGWGRYGNIGD-- 201

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGD 166
                 G    R +    +    + V QV  G  HS+ +   G ++TWG         GD
Sbjct: 202 ------GESQDRHLPTLAKGLEGVKVAQVNCGWRHSIAVDEGGAMYTWGWGAYAQLMQGD 255

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            K   VP RV+ ++QV  +A G  H +A    G L+A G N++GQ G G  +   +   V
Sbjct: 256 RKDHYVPKRVEAVQQVATVAGGWRHTMAADSQGRLFASGWNKFGQCGVGHNEDVVRVQQV 315

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L+G  +V + +G  H+ A+T  G+ + WGR  +G+LG      S+  V          
Sbjct: 316 EALAGERVVQVKSGWKHTMAVTHTGKFFSWGRNVNGQLGHSGMQDSNSPV---------- 365

Query: 287 DIVQVSCGGTHSVALTR 303
           ++  +S GG ++ ALTR
Sbjct: 366 ELAALSRGGINTDALTR 382



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 26/252 (10%)

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTRE---GHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           + Q   P++I   +A G +HS+ L        V +WG+        GD +    P  V  
Sbjct: 1   MAQDTEPEVI--GLACGSSHSLALISTPSGSMVLSWGRGEDGQLGHGDAEDRQEPQAVFS 58

Query: 179 LEQVKLIAV--GAFHNLALQE-DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           L      +V  GA +++A+   D  +++WG  ++G+LGTGD +    P P+  L+G  + 
Sbjct: 59  LLHRGATSVHCGAEYSMAVAGGDKQVYSWGWGDFGRLGTGDVKDVFIPCPLPALAGRRVA 118

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            +A G  H+   T +G+++ +GR ++G+ G G       + PQ V  L G+++V V+CG 
Sbjct: 119 SVACGDTHTLVATAEGQLFAFGRNQNGQCGLGSIQDC--LEPQLVTALQGKEVVAVACGA 176

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HS+ +T +G ++ +G G +G +G G      Q   +P           G++   +A+ V
Sbjct: 177 EHSMCVTSEGEVYCWGWGRYGNIGDGES----QDRHLP-------TLAKGLEGVKVAQ-V 224

Query: 356 ACGGRHTLAIVE 367
            CG RH++A+ E
Sbjct: 225 NCGWRHSIAVDE 236


>gi|91202109|emb|CAJ75169.1| hypothetical protein kuste4407 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1590

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 136/257 (52%), Gaps = 20/257 (7%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           + A G  H LA+   G  +AWG N  GQ G+E            ++  IP + +    + 
Sbjct: 566 KIAAGARHSLALKSNGTVWAWGNNGDGQLGDET----------TKNRTIPAQVSNVNAIT 615

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            +  G +HS+ L  +G VW WG  W      G   + + PV++ GL  +  IA G +H++
Sbjct: 616 TIDGGASHSLALKSDGTVWVWGANWDGQLGDGTNTRKTTPVQISGLSDIISIACGMYHSI 675

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+ DG +WA+G N+YGQLG G    R++P+ V GLS   ++ IA G +H  AL  DG V
Sbjct: 676 ALKSDGTVWAFGRNDYGQLGDGTNVYRNKPVQVSGLSD--VIAIAGGDYHCLALKSDGIV 733

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG  E G+L  GD   +++  P +V+ ++  ++  ++ G  HS+AL  D  ++++G  
Sbjct: 734 WAWGNNESGQL--GDGTTTNRNTPVQVSSIS--NVAAIARGWVHSLALKSDETVWAWGSN 789

Query: 314 DHGRLGYGRKVTTGQPM 330
             G+LG G       P+
Sbjct: 790 GSGQLGDGTTTNRTTPV 806



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 173/363 (47%), Gaps = 49/363 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG+  DGQLG    + R     V  +    + ++  G+ +SLA+  DG   
Sbjct: 577 LKSNGTVWAWGNNGDGQLGDETTKNRTIPAQVSNVNA--ITTIDGGASHSLALKSDGTVW 634

Query: 59  -------------TKT-ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T T +  P Q++ LS+  I+  A G +H +A+   G  +A+G N+YG
Sbjct: 635 VWGANWDGQLGDGTNTRKTTPVQISGLSD--IISIACGMYHSIALKSDGTVWAFGRNDYG 692

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G       D   + R     P + +    V  +A G  H + L  +G VW WG     
Sbjct: 693 QLG-------DGTNVYRNK---PVQVSGLSDVIAIAGGDYHCLALKSDGIVWAWGNNESG 742

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G     + PV+V  +  V  IA G  H+LAL+ D  +WAWG+N  GQLG G T  R
Sbjct: 743 QLGDGTTTNRNTPVQVSSISNVAAIARGWVHSLALKSDETVWAWGSNGSGQLGDGTTTNR 802

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS------K 274
           + P+ +  ++ +  +    G  ++ AL  DG   GW  GE+G   + +N+ SS      +
Sbjct: 803 TTPVNITNINNIIAIAGGGG--YTIALKSDGT--GWTCGEYG-WDYSENNGSSYWGYSYR 857

Query: 275 MVPQKVNLLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             P +V   AG  D+V V+ G  H V L +DG ++++G   +G+LG G       P++V 
Sbjct: 858 TTPDQV---AGINDVVAVAGGWQHIVVLKQDGTVWTWGVNWYGQLGDGTTTDRDTPVQVD 914

Query: 334 INI 336
           IN+
Sbjct: 915 INL 917



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 6/148 (4%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           IA GA H+LAL+ +G +WAWGNN  GQLG   T+ R+ P  V  ++ +T +D   G  HS
Sbjct: 567 IAAGARHSLALKSNGTVWAWGNNGDGQLGDETTKNRTIPAQVSNVNAITTID--GGASHS 624

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL  DG V+ WG    G+LG G N +  K  P +++ L+  DI+ ++CG  HS+AL  D
Sbjct: 625 LALKSDGTVWVWGANWDGQLGDGTNTR--KTTPVQISGLS--DIISIACGMYHSIALKSD 680

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G +++FGR D+G+LG G  V   +P++V
Sbjct: 681 GTVWAFGRNDYGQLGDGTNVYRNKPVQV 708


>gi|195168456|ref|XP_002025047.1| GL26839 [Drosophila persimilis]
 gi|194108492|gb|EDW30535.1| GL26839 [Drosophila persimilis]
          Length = 3840

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 173/394 (43%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN- 63
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 2977 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 3036

Query: 64   ---------------IPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                           IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 3037 GSGGRLGVGGADSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 3096

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  GHV TWG+      
Sbjct: 3097 GHGNRMSYDRPKLVEH--------LNGMNVADIACGSAHSAAITASGHVLTWGKGRYGRL 3148

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 3149 GHGDSEDQLRPQLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 3208

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY W +G+  RLG G  D   +  P+
Sbjct: 3209 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWSKGDFHRLGHGSVDHVRR--PK 3266

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 3267 KVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVA----- 3321

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 3322 ------ALQGKHIVK-VTCGSAHTLALSTSQLSE 3348



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 180/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  +GK       
Sbjct: 1833 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVGQNGKVYACGEG 1892

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 1893 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 1952

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++  + +  ++      +R VA G +HS  ++ +G ++TWG        
Sbjct: 1953 HGNRTTLDKPRLV--ETLRSKK------IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 2004

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   ++I V         LAL EDG++++WG+ ++G+LG G ++ 
Sbjct: 2005 HGDNATQLKPKLVAALAGRRVIQVACGSRDAQTLALTEDGSVFSWGDGDFGKLGRGGSEG 2064

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ ++ I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 2065 SDTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 2122

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 2123 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 2175

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 2176 ----IGLDAVFVNR-VACGSSHSIA 2195



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 160/319 (50%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  A G      V   G+ YA G    G+ G            +  
Sbjct: 1854 KVPTFSQTISRLRPIHIAGGSKSLFIVGQNGKVYACGEGTNGRLGLG----------VTH 1903

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 1904 NVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 1963

Query: 175  RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             V+ L   K+  +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 1964 LVETLRSKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNATQLKPKLVAALAGR 2023

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALT+DG V+ WG G+ G+LG G ++ S    P ++  L+G  ++Q
Sbjct: 2024 RVIQVACGSRDAQTLALTEDGSVFSWGDGDFGKLGRGGSEGSD--TPHEIERLSGIGVIQ 2081

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+            G    R
Sbjct: 2082 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI------------GGLRGR 2129

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R I   VA G  H LA+ +
Sbjct: 2130 RVIH--VAVGALHCLAVTD 2146



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 1986 ISSQGELYTWGLGEYGRLGHGDNATQLKPKLVAALAGRRVIQVACGSRDAQTLALTEDGS 2045

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  + P ++  LS   ++Q   G    LA+   G  + WG  +
Sbjct: 2046 VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGD 2105

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 2106 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAW- 2153

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 2154 ---------------------------------------------GDNDHGQQGSGNTFV 2168

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 2169 NKKPALVIGLDAVFVNRVACGSSHSIA 2195


>gi|24659266|gb|AAH38960.1| HERC3 protein [Homo sapiens]
          Length = 368

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 153/312 (49%), Gaps = 36/312 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG   +D+  +  P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL--SDEKDRESPCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+         M   +N   PR   + +        
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGH-------DSMNDEVN---PRRVLELMGSE--VTQ 298

Query: 355 VACGGRHTLAIV 366
           +ACG +HTLA V
Sbjct: 299 IACGRQHTLAFV 310



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 163/355 (45%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVCGF--ISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  I+  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                +    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEK 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 341



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 20/255 (7%)

Query: 120 LRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVR 175
           L+  +  PQ C       V++VA GG HSV L  +G V+T G       G  ++ + P +
Sbjct: 18  LQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQ 77

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGL 232
           +  L  + +  +A G  H+LAL + G L++WG    GQLG   T+   + P  +Q L+  
Sbjct: 78  IGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQ 137

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  L G  + QV+
Sbjct: 138 TILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRSLEGIPLAQVA 196

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            GG HS AL+  G +F +G  + G+LG   +     P  V +             R    
Sbjct: 197 AGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL------------LRTQKV 244

Query: 353 KLVACGGRHTLAIVE 367
             ++CG  HT  + +
Sbjct: 245 VYISCGEEHTAVLTK 259



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 41/251 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG+G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T    
Sbjct: 105 LFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKN 164

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G 
Sbjct: 165 SHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGL 224

Query: 109 EPERKDDTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             E+  ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G
Sbjct: 225 SDEKDRESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCG 272

Query: 166 DIKQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDT 217
            +   S+     P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T
Sbjct: 273 QLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHT 332

Query: 218 QPRSQPIPVQG 228
                P PV+G
Sbjct: 333 CNVKCPSPVKG 343



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G    
Sbjct: 265 TFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGAR 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|328704350|ref|XP_001948518.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like isoform
           1 [Acyrthosiphon pisum]
          Length = 1053

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 184/384 (47%), Gaps = 45/384 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC---VVKALEPYKVRSVVAGSRNSLAICDDG------ 57
           +  WG+  +G+LG+G  EE   +    +V       ++SV  G+ ++LA+ +DG      
Sbjct: 1   MYCWGNTINGELGLGGIEENYILSPEEIVNFESVNNIKSVACGNNHTLAVTEDGQLYACG 60

Query: 58  ------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                       +TK + IP  V +L  T +   A G  H +A+++ G+ Y WG +  GQ
Sbjct: 61  SNDFGQLGHDGCRTKLQKIPG-VESLVMTSV---ACGEAHSMALNEWGQLYTWGSDSCGQ 116

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----- 160
            G E     D G   +  IV   +    +++ Q++ G  H + LT  G ++TWG      
Sbjct: 117 LGLET----DEGIQYKPKIV---KTLASMLLVQISCGYKHCMALTNHGELYTWGSNEFGQ 169

Query: 161 PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                    +S P  V  L    +  IA G +H+  + + GA++ WG N++GQLG     
Sbjct: 170 LGLGLGPGNVSKPTLVNSLVGLPISFIACGGYHSFVVSKSGAVFGWGKNDFGQLGINSQT 229

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             S P  ++ +  + +  IA G   S  LT DG V+  G G +G+LG G    S+++VP+
Sbjct: 230 SLSSPAQLKTIRTVKVKYIAGGEDFSVFLTYDGGVFTCGAGMYGQLGHG--SFSNEIVPR 287

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV--PIN 335
           KV  L G  + QV+CG  H++ L    G ++SFG G  G+LG    + +  P  V  P  
Sbjct: 288 KVLELMGSTVTQVTCGRRHTLTLVPSKGRVYSFGLGSVGQLGTKSSINSNTPQLVLGPWL 347

Query: 336 IPAPRNAGDGVDRRWIAKLVACGG 359
            P+  +  +  +++++ K +  GG
Sbjct: 348 SPSGTSMIE-TNKQYVVKSIYAGG 370



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 149/314 (47%), Gaps = 46/314 (14%)

Query: 68  VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP 127
           VN  S   I   A G  H LAV + G+ YA G N++GQ G +  R       L++   IP
Sbjct: 29  VNFESVNNIKSVACGNNHTLAVTEDGQLYACGSNDFGQLGHDGCRTK-----LQK---IP 80

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--------------WPPGDIKQISVP 173
                 L++  VA G  HS+ L   G ++TWG                + P  +K ++  
Sbjct: 81  G--VESLVMTSVACGEAHSMALNEWGQLYTWGSDSCGQLGLETDEGIQYKPKIVKTLASM 138

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGL 232
           + VQ       I+ G  H +AL   G L+ WG+NE+GQLG G      S+P  V  L GL
Sbjct: 139 LLVQ-------ISCGYKHCMALTNHGELYTWGSNEFGQLGLGLGPGNVSKPTLVNSLVGL 191

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  IA GG+HS  ++  G V+GWG+ + G+LG   N ++S   P ++  +    +  ++
Sbjct: 192 PISFIACGGYHSFVVSKSGAVFGWGKNDFGQLGI--NSQTSLSSPAQLKTIRTVKVKYIA 249

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G   SV LT DG +F+ G G +G+LG+G       P +V          G  V +    
Sbjct: 250 GGEDFSVFLTYDGGVFTCGAGMYGQLGHGSFSNEIVPRKVL------ELMGSTVTQ---- 299

Query: 353 KLVACGGRHTLAIV 366
             V CG RHTL +V
Sbjct: 300 --VTCGRRHTLTLV 311



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 15/117 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQK-VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           +Y WG   +G LG G  +++  + P++ VN  +  +I  V+CG  H++A+T DG +++ G
Sbjct: 1   MYCWGNTINGELGLGGIEENYILSPEEIVNFESVNNIKSVACGNNHTLAVTEDGQLYACG 60

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D G+LG+    T  Q  ++P           GV+   +   VACG  H++A+ EW
Sbjct: 61  SNDFGQLGHDGCRTKLQ--KIP-----------GVESLVMTS-VACGEAHSMALNEW 103



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG  + GQLGI +         +K +   KV+ +  G   S+ +  DG   T    
Sbjct: 211 AVFGWGKNDFGQLGINSQTSLSSPAQLKTIRTVKVKYIAGGEDFSVFLTYDGGVFTCGAG 270

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E +P +V  L  + + Q   G  H L  V  +GR Y++G    GQ G 
Sbjct: 271 MYGQLGHGSFSNEIVPRKVLELMGSTVTQVTCGRRHTLTLVPSKGRVYSFGLGSVGQLGT 330

Query: 109 EPERKDDTGRILRRDIVIPQ-----RCAPKLIVRQVAAGGTHSVV 148
           +     +T +++    + P          + +V+ + AGG    V
Sbjct: 331 KSSINSNTPQLVLGPWLSPSGTSMIETNKQYVVKSIYAGGDQCFV 375


>gi|222623048|gb|EEE57180.1| hypothetical protein OsJ_07117 [Oryza sativa Japonica Group]
          Length = 463

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 178/372 (47%), Gaps = 60/372 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKAL---EPYKVRSVV-AGSRNSLAICDD------ 56
           + +WG GEDGQLG G+ E+R    V+ A     P  V SVV  G+ ++ A  D+      
Sbjct: 41  VCSWGRGEDGQLGHGDAEDRPVPTVLTAAFDDAPGGVASVVICGADHTTAYSDEELQLYS 100

Query: 57  -----------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      G +     P  + AL   +I Q A G  HCLAV   G  ++WG N+ GQ
Sbjct: 101 WGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQNGQ 160

Query: 106 CGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            G         G     D ++PQ+      + V+ +AAG  H+  +T +G ++ WG  W 
Sbjct: 161 LG--------LGNT--EDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWG--WG 208

Query: 164 P------GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                  GD     +P +V  +  +++ L+A G  H + +   G+++ +G ++YGQLG G
Sbjct: 209 RYGNLGLGDRDDRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGHG 268

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAA---------------GGWHSTALTDDGEVYGWGRGE 260
           D +    P  ++ L   T+    A               GG    AL  DG++YGWG  +
Sbjct: 269 DFEDHLVPHKLEALKDTTISQEEAVELIFFFLGDEGFRVGGGIQWALAADGKLYGWGWNK 328

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G++G GDN+      P +VN    + +VQV+CG  H++ALT   ++FS+GRG  G+LG+
Sbjct: 329 FGQVGVGDNEDHCS--PVQVNFPNEQKVVQVACGWRHTLALTEAKNVFSWGRGTSGQLGH 386

Query: 321 GRKVTTGQPMEV 332
           G  V    P  +
Sbjct: 387 GEIVDRNIPKMI 398



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 133/254 (52%), Gaps = 13/254 (5%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
            +V  + G  H +A+   G   +WG  E GQ G      D   R +   +      AP  
Sbjct: 21  SVVLISAGASHSVALLSGGVVCSWGRGEDGQLG----HGDAEDRPVPTVLTAAFDDAPGG 76

Query: 135 IVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLEQVKL--IAV 187
           +   V  G  H+   + E    + W WG       G+   +  P  +Q L+ V++  IA 
Sbjct: 77  VASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIAC 136

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+   G + +WG N+ GQLG G+T+    P  +Q   G+ +  IAAG  H+ A+
Sbjct: 137 GDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAV 196

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+DG++YGWG G +G LG GD D   +++P+KV+ + G+ +V V+CG  H++ ++  G I
Sbjct: 197 TEDGDLYGWGWGRYGNLGLGDRD--DRLIPEKVSSVNGQKMVLVACGWRHTITVSSSGSI 254

Query: 308 FSFGRGDHGRLGYG 321
           +++G   +G+LG+G
Sbjct: 255 YTYGWSKYGQLGHG 268



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 27/254 (10%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D  +P+  AP+  V  ++AG +HSV L   G V +WG+        GD +   VP  +  
Sbjct: 11  DEAVPE--APERSVVLISAGASHSVALLSGGVVCSWGRGEDGQLGHGDAEDRPVPTVLTA 68

Query: 179 LEQ------VKLIAVGAFHNLALQ-EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
                      ++  GA H  A   E+  L++WG  ++G+LG G++     P P+Q L G
Sbjct: 69  AFDDAPGGVASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSSDVFNPQPIQALQG 128

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           + +  IA G  H  A+T  G V+ WGR ++G+LG G+ + S  ++PQK+    G  +  +
Sbjct: 129 VRITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDS--LLPQKIQAFEGVRVKMI 186

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + G  H+ A+T DG ++ +G G +G LG G +     P +V     +  N    V     
Sbjct: 187 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRDDRLIPEKV-----SSVNGQKMV----- 236

Query: 352 AKLVACGGRHTLAI 365
             LVACG RHT+ +
Sbjct: 237 --LVACGWRHTITV 248



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 59/323 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG G+ G+LG GN+ +      ++AL+  ++  +  G  + LA+   G         
Sbjct: 98  LYSWGWGDFGRLGHGNSSDVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQ 157

Query: 58  -------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   T+   +P ++ A    ++   A G  H  AV + G  Y WG   YG  G   
Sbjct: 158 NGQLGLGNTEDSLLPQKIQAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD 217

Query: 111 ERKDDTGRILRRDIVIPQRCAP----KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-- 164
                     R D +IP++ +     K+++  VA G  H++ ++  G ++T+G  W    
Sbjct: 218 ----------RDDRLIPEKVSSVNGQKMVL--VACGWRHTITVSSSGSIYTYG--WSKYG 263

Query: 165 ----GDIKQISVPVRVQGL--------EQVKLIA---------VGAFHNLALQEDGALWA 203
               GD +   VP +++ L        E V+LI          VG     AL  DG L+ 
Sbjct: 264 QLGHGDFEDHLVPHKLEALKDTTISQEEAVELIFFFLGDEGFRVGGGIQWALAADGKLYG 323

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG N++GQ+G GD +    P+ V   +   +V +A G  H+ ALT+   V+ WGRG  G+
Sbjct: 324 WGWNKFGQVGVGDNEDHCSPVQVNFPNEQKVVQVACGWRHTLALTEAKNVFSWGRGTSGQ 383

Query: 264 LGFGDNDKSSKMVPQKVNLLAGE 286
           LG G  +   + +P+ ++ L+ +
Sbjct: 384 LGHG--EIVDRNIPKMIDALSSD 404


>gi|432095949|gb|ELK26864.1| Putative E3 ubiquitin-protein ligase HERC3 [Myotis davidii]
          Length = 1031

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/319 (31%), Positives = 151/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE--EPERKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G   E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHGREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            IV             VA G +HS+ L+  G +++WG     Q         ++VP  +Q
Sbjct: 85  HIV------------HVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKDFPSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  + +V +SCG
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQKVVYISCG 250

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             H+  LT+ G +F+FG G  G+LG+                    +  D V+ R + +L
Sbjct: 251 EEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEVNPRRVLEL 291

Query: 355 -------VACGGRHTLAIV 366
                  +ACG +HTLA V
Sbjct: 292 MGSEVTQIACGRQHTLAFV 310



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 174/391 (44%), Gaps = 46/391 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ++ WG    GQ GI  N +       VC    +    V+ V  G  +S+ + +DG+  T 
Sbjct: 1   MLCWGYWSLGQPGISTNLQGIVAEPQVC--GFISDRSVKEVACGGNHSVFLLEDGEVYTC 58

Query: 63  --------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P Q+ AL++  IV  A G  H LA+ D+G+ ++WG    GQ   
Sbjct: 59  GLNTKGQLGHGREGNKPEQIGALADQHIVHVACGESHSLALSDRGQLFSWGAGSDGQ--- 115

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
                   G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q
Sbjct: 116 -------LGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQ 168

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                D    + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D +
Sbjct: 169 LGLGKDFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEE 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  V+ L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P+
Sbjct: 229 DRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           +V  L G ++ Q++CG  H++A     G I++FG G  G+LG G       P  V     
Sbjct: 287 RVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWA 346

Query: 338 APRNAGDGVDRRW---IAKLVACGGRHTLAI 365
           A R        R+   I K +  GG  T  +
Sbjct: 347 AHRGQLSATADRFKYHIVKQIFSGGDQTFVL 377



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 95/239 (39%), Gaps = 58/239 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A+      WG    GQLG+G +   +         P +VRS+                 
Sbjct: 152 LAADGQFFTWGKNSHGQLGLGKDFPSQ-------ASPQRVRSL----------------- 187

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG--- 117
            E IP          + Q A GG H  A+   G  + WG N  GQ G   E   ++    
Sbjct: 188 -EGIP----------LAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHV 236

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV----- 172
           ++LR   V+   C           G  H+ VLT+ G V+T+G     G +   S+     
Sbjct: 237 KLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFGAG-SCGQLGHDSMNDEVN 284

Query: 173 PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           P RV  L   +V  IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 285 PRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 343


>gi|345494033|ref|XP_001605647.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Nasonia
            vitripennis]
          Length = 4752

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 185/401 (46%), Gaps = 65/401 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
            +I  WG    GQLG     + +     ++L   +   +  G +   A+  DGK       
Sbjct: 3895 AIYGWGHNHRGQLGGLEGAKVKLPLPCESLSALRPIQLAGGEQTLFAVTADGKVYATGYG 3954

Query: 60   ----------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       +  +P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  + G+ G
Sbjct: 3955 ALGRLGTGGVDSVMVPTLLESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEGDDGKLG 4014

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                     G  +  D        PKLI       +  +A GG HS  ++  G ++TWG+
Sbjct: 4015 H--------GNRITYD-------RPKLIEALLGTEIVDIACGGHHSAAISSAGWLYTWGK 4059

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD      P  V  L+  K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 4060 GRYGRLGHGDSDDQLKPTVVTALQGYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKL 4119

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P+ ++ L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D  
Sbjct: 4120 GRGGSDGCKVPMKIESLAGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHV 4179

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV+ L G+ IV ++ G  H VA +  G ++++G  D G+LG G    T    + 
Sbjct: 4180 RR--PRKVSALQGKKIVSIATGSLHCVACSDKGEVYTWGDNDEGQLGDG----TTHAQQS 4233

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            P  + A +  G  + R      VACG  HTLA   W T ++
Sbjct: 4234 PRLVHALQ--GKNITR------VACGSAHTLA---WSTTKA 4263



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 177/385 (45%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
            ++  WG  +  QLG     + +     + L   K   +  GS+    +  +GK       
Sbjct: 2923 AVYVWGLNDKDQLGGLKGSKIKLPVHSEVLSKLKPIHIAGGSKTLFVVSQEGKLYACGEG 2982

Query: 60   --------KTENI--PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       N+  P  +  LS   I + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 2983 TNGRLGLGDNNNVGEPKPIPFLSQYIIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLG 3042

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++  + +  +R      +R +A G  HS  +   G ++TWG        
Sbjct: 3043 HGNRVSLDKPRLI--EALKSKR------IRDIACGSGHSAAIASNGELYTWGLGEYGRLG 3094

Query: 164  PGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L  ++V  +A G+     +AL EDG++++WG+ ++G+LG G +  
Sbjct: 3095 HGDTTTHLKPKLVDALVGQRVIQVACGSRDAQTMALTEDGSVYSWGDGDFGKLGRGGSDG 3154

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+PV  L+GL +V +  G   S ALT  GEV+ WG+G++ RLG G++    +  P  
Sbjct: 3155 CYSPLPVDRLNGLGVVQVECGAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRR--PTL 3212

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            V  L G+ +V V+ G  H +A+T  G ++++G  DHG+ G G  +   +P  V       
Sbjct: 3213 VEGLRGKKVVHVAVGALHCLAVTDAGQVYAWGDNDHGQQGNGSTMVNRKPSLV------- 3265

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
             N  D    R     VACG  H++A
Sbjct: 3266 HNLEDAKVNR-----VACGSSHSIA 3285



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 180/391 (46%), Gaps = 52/391 (13%)

Query: 6    SIIAWGSGE--DGQLGIGNNEEREWVCVVKALEPYK-----VRSVVAGSRNS-------- 50
            S+IA  +G+  D  L + N   R    +V  L+  K     V   +   RN         
Sbjct: 2819 SLIAVNAGDSFDSMLELVNINVRVNDSIVTLLQDAKEYYPCVEIAIKQCRNGGIDCKIHG 2878

Query: 51   LAICDDGKTKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
            L I    K     + + V+ L S+ ++VQ  +       V      Y WG N+       
Sbjct: 2879 LQIIGYKKVFENQLATSVSFLASDWEVVQEQMTAQRASDVQQNAAVYVWGLND------- 2931

Query: 110  PERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
               KD  G +    I +P       KL    +A G     V+++EG ++  G+       
Sbjct: 2932 ---KDQLGGLKGSKIKLPVHSEVLSKLKPIHIAGGSKTLFVVSQEGKLYACGEGTNGRLG 2988

Query: 164  PGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD   +  P  +  L Q  +K +AV  G  H LAL +DG +++WG  E G+LG G+   
Sbjct: 2989 LGDNNNVGEPKPIPFLSQYIIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNRVS 3048

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              +P  ++ L    + DIA G  HS A+  +GE+Y WG GE+GRLG GD   ++ + P+ 
Sbjct: 3049 LDKPRLIEALKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDT--TTHLKPKL 3106

Query: 280  VNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            V+ L G+ ++QV+CG     ++ALT DG ++S+G GD G+LG G       P+      P
Sbjct: 3107 VDALVGQRVIQVACGSRDAQTMALTEDGSVYSWGDGDFGKLGRGGSDGCYSPL------P 3160

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
              R  G GV +      V CG + +LA+ ++
Sbjct: 3161 VDRLNGLGVVQ------VECGAQFSLALTKY 3185



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG G+DG+LG GN                                      
Sbjct: 3996 LSSEGHVYSWGEGDDGKLGHGNR------------------------------------I 4019

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            T + P  + AL  T+IV  A GG H  A+   G  Y WG   YG+ G       D+   L
Sbjct: 4020 TYDRPKLIEALLGTEIVDIACGGHHSAAISSAGWLYTWGKGRYGRLGH-----GDSDDQL 4074

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            +  +V   +   K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 4075 KPTVVTALQ-GYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKV 4129

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P++++ L  + ++ V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 4130 PMKIESLAGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRKVSALQ 4189

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  +V IA G  H  A +D GEVY WG  + G+L  GD    ++  P+ V+ L G++I +
Sbjct: 4190 GKKIVSIATGSLHCVACSDKGEVYTWGDNDEGQL--GDGTTHAQQSPRLVHALQGKNITR 4247

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 4248 VACGSAHTLA 4257



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 18/259 (6%)

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
           G H LA+  +G  Y+WG  + G+ G       D  +++    V+  R      V  +A G
Sbjct: 510 GKHYLALTTKGIVYSWGNGDGGRLGHGDSFSCDEPQVIE---VLSDR-----TVTYIACG 561

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLA 194
            T+S  ++  G + TWG+        G    IS+P  V  L    V  +A G+     L 
Sbjct: 562 STYSAAISSTGELLTWGRGSYGRLGHGICDDISIPTVVTALNGHTVTHVACGSGDSQTLC 621

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           +   G +++WG+ +YG+LG G +     P  V  L    +V +  GG  S ALT  GEVY
Sbjct: 622 VTNSGIVFSWGDGDYGKLGRGGSDGSKLPKIVDKLLDQNVVKVFCGGQFSAALTAHGEVY 681

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+G+H RLG G+ +      P+ V  L  + +  +S G  H +A+T D  ++ +GR D
Sbjct: 682 TWGKGDHYRLGHGNEEHVR--FPKLVEGLRNKKVRDLSVGNLHILAITEDQLVYGWGRND 739

Query: 315 HGRLGYGRKVTTGQPMEVP 333
             ++         +P   P
Sbjct: 740 ACQIDPSLGAVVSEPTLCP 758



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 92/169 (54%), Gaps = 16/169 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            GA++ WG+N  GQLG  +      P+P + LS L  + +A G     A+T DG+VY  G 
Sbjct: 3894 GAIYGWGHNHRGQLGGLEGAKVKLPLPCESLSALRPIQLAGGEQTLFAVTADGKVYATGY 3953

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S MVP  +  +    I  V V+ GG H +AL+ +GH++S+G GD G
Sbjct: 3954 GALGRLGTGGVD--SVMVPTLLESIQHVFIKKVAVNSGGKHCLALSSEGHVYSWGEGDDG 4011

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +LG+G ++T  +P  +   +       + VD       +ACGG H+ AI
Sbjct: 4012 KLGHGNRITYDRPKLIEALL-----GTEIVD-------IACGGHHSAAI 4048



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 123/272 (45%), Gaps = 34/272 (12%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
           +A TT   + +WG+G+ G+LG G++   +   V++ L    V  +  GS  S AI   G+
Sbjct: 514 LALTTKGIVYSWGNGDGGRLGHGDSFSCDEPQVIEVLSDRTVTYIACGSTYSAAISSTGE 573

Query: 59  TKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGG 100
             T                 +IP+ V AL+   +   A G      L V + G  ++WG 
Sbjct: 574 LLTWGRGSYGRLGHGICDDISIPTVVTALNGHTVTHVACGSGDSQTLCVTNSGIVFSWGD 633

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            +YG+ G          +I+  D ++ Q       V +V  GG  S  LT  G V+TWG+
Sbjct: 634 GDYGKLGRGGSDGSKLPKIV--DKLLDQN------VVKVFCGGQFSAALTAHGEVYTWGK 685

Query: 161 ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                   G+ + +  P  V+GL  ++V+ ++VG  H LA+ ED  ++ WG N+  Q+  
Sbjct: 686 GDHYRLGHGNEEHVRFPKLVEGLRNKKVRDLSVGNLHILAITEDQLVYGWGRNDACQIDP 745

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                 S+P     LSG +++ +  G   S A
Sbjct: 746 SLGAVVSEPTLCPTLSGKSVIGLVCGPMQSFA 777



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            +AS   +  WG GE G+LG G+        +V AL   +V  V  GSR+  ++A+ +DG 
Sbjct: 3076 IASNGELYTWGLGEYGRLGHGDTTTHLKPKLVDALVGQRVIQVACGSRDAQTMALTEDGS 3135

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                   P  V+ L+   +VQ   G    LA+   G  + WG  +
Sbjct: 3136 VYSWGDGDFGKLGRGGSDGCYSPLPVDRLNGLGVVQVECGAQFSLALTKYGEVWTWGKGD 3195

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +RR  ++      K++   VA G  H + +T  G V+ WG   
Sbjct: 3196 YFRLGHGNDHH------VRRPTLVEGLRGKKVV--HVAVGALHCLAVTDAGQVYAWGDND 3247

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLA 194
                  G       P  V  LE  K+  +A G+ H++A
Sbjct: 3248 HGQQGNGSTMVNRKPSLVHNLEDAKVNRVACGSSHSIA 3285



 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 35/167 (20%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           + AWGN  +G          S P     ++ + +  +         L+  G+VY    G 
Sbjct: 435 VLAWGNVHFGS--------GSMPFYCDAIAEIGVKQLCCTERALLILSLSGKVYMMYYG- 485

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGDHGRL 318
                      S    PQ V   A +D+VQ++    G H +ALT  G ++S+G GD GRL
Sbjct: 486 -----------SETQYPQSVYGFA-DDVVQIASHPDGKHYLALTTKGIVYSWGNGDGGRL 533

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+G   +  +P  + +           +  R +   +ACG  ++ AI
Sbjct: 534 GHGDSFSCDEPQVIEV-----------LSDRTVT-YIACGSTYSAAI 568


>gi|326673186|ref|XP_685685.5| PREDICTED: probable E3 ubiquitin-protein ligase HERC4 [Danio rerio]
          Length = 1053

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 185/391 (47%), Gaps = 46/391 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV----CVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           ++ WG+   GQLG+G  +E   +    C  +  E  +VR V  G R+++ + +DG     
Sbjct: 1   MLCWGNASFGQLGLGGIDEEVLLEPRRC--EFFEGKRVRDVGCGRRHTVFLLEDGTVYTC 58

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      K    P QV +L    IV  + G  H LA++D+G+ +AWG    GQ G 
Sbjct: 59  GCNDLGQLGHEKARKKPEQVVSLDAQNIVAVSCGEAHTLALNDKGQVFAWGLGSDGQLG- 117

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-PWPPGDI 167
                +D  R+ R       +   ++ + QVA G  HS+ L R G +++WGQ  +    +
Sbjct: 118 -LSIVEDCLRVPRT-----VKSLSEVHITQVACGYWHSLALARGGEIFSWGQNKYGQLGL 171

Query: 168 KQ----ISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            Q    +  P  +Q L+ +    I+ G  H+  L   GA++ WG N++GQLG GD   R 
Sbjct: 172 GQQGACVCSPQVIQSLQGIPFGQISAGGAHSFGLTLSGAIFGWGRNKFGQLGLGDNDDRR 231

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ ++ L    +V I  G  H+ ALT +G V+ +G G +G+L  G N  + ++ P+KV 
Sbjct: 232 FPVLLKTLRSQQVVYICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTNHEVNPRKVF 289

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN----- 335
            L G  + Q++CG  H++A     G I SFG G +G+L  G + T  +    P+      
Sbjct: 290 ELMGSVVSQIACGRQHTLAFIPSSGKIDSFGLGGNGQL--GTRSTCNRISPTPVKGCWRA 347

Query: 336 --IPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              P         +R +  K +  GG  + A
Sbjct: 348 HADPCVELCISEAERSYCVKRIYAGGDQSFA 378



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+LG G  D+   + P++     G+ +  V CG  H+V L  DG +++ G  D 
Sbjct: 4   WGNASFGQLGLGGIDEEVLLEPRRCEFFEGKRVRDVGCGRRHTVFLLEDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +     +P +V             +D + I   V+CG  HTLA+
Sbjct: 64  GQLGHEK--ARKKPEQVV-----------SLDAQNIVA-VSCGEAHTLAL 99



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+G+N++R +  ++K L   +V  +  G  ++ A+  +G        
Sbjct: 210 AIFGWGRNKFGQLGLGDNDDRRFPVLLKTLRSQQVVYICCGEDHTAALTKEGGVFTFGAG 269

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                    T  E  P +V  L  + + Q A G  H LA +   G+  ++G    GQ G
Sbjct: 270 GYGQLGHNSTNHEVNPRKVFELMGSVVSQIACGRQHTLAFIPSSGKIDSFGLGGNGQLG 328


>gi|444910521|ref|ZP_21230705.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444719140|gb|ELW59939.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 715

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 164/335 (48%), Gaps = 43/335 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           ++++WG+   GQLG G          V  L    ++S+ AG  +SLA+  DG        
Sbjct: 224 AVVSWGANTYGQLGNGTTTTSASPVGVSGLN--NIKSLAAGGNHSLALKSDGTVTAWGYN 281

Query: 61  ---------TENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T N+  P  V+ LS    V A +   H +     G  + WG N YG  G  
Sbjct: 282 AYGQVGNGATANVLSPIAVSTLSGVTAVSAGVSHSHAIG-SSNGVIWGWGLNTYGGLGNN 340

Query: 110 PERKDDT-GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD 166
            +    T G IL    +           + VA G  H++ +  +G VW WG       GD
Sbjct: 341 TKVNRSTPGTILLTSGL-----------QGVAGGAQHTIYVKGDGTVWAWGSNTYGQIGD 389

Query: 167 ---IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
              +++++ PV++  L  +  +A GA H+LAL  +G ++AWG N +GQLG G T  RS P
Sbjct: 390 GTPLRRLT-PVQLSTLTGIIAVAAGANHSLALAANGTVFAWGRNNHGQLGDGSTTNRSLP 448

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V  L+G  +V +AAG  HS AL  DG VY WGR   G+L  GD   + ++ P  V+ L
Sbjct: 449 TQVPNLTG--IVALAAGATHSLALRFDGTVYAWGRNHLGQL--GDETCTDRLSPVAVHYL 504

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
             E +V +S G  HS+A+ ++G  F++G  +HG+L
Sbjct: 505 --EKVVAISAGDNHSLAIHQNGTAFAWGSDEHGQL 537



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 165/363 (45%), Gaps = 53/363 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           ++ AWGS   GQ+G G    R  +  V+      + +V AG+ +SLA+            
Sbjct: 375 TVWAWGSNTYGQIGDGTPLRR--LTPVQLSTLTGIIAVAAGANHSLALAANGTVFAWGRN 432

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   ++P+QV  L  T IV  A G  H LA+   G  YAWG N  GQ G+E
Sbjct: 433 NHGQLGDGSTTNRSLPTQVPNL--TGIVALAAGATHSLALRFDGTVYAWGRNHLGQLGDE 490

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
                        D + P        V  ++AG  HS+ + + G  + WG     Q    
Sbjct: 491 T----------CTDRLSPVAVHYLEKVVAISAGDNHSLAIHQNGTAFAWGSDEHGQLCDS 540

Query: 165 GDIKQISVPV--RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G       P+  ++ G+ +   IA GA H L L+ +G  WA G+N YGQLG G T  +S 
Sbjct: 541 GSGSGRFSPLISQIPGIVKGIGIAAGANHTLLLEANGTAWACGDNLYGQLGDGTTTDKSA 600

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS--------K 274
           P+P+  L+      +AAGG  S ALT +G V  WG    G+L  GDN  +S        +
Sbjct: 601 PVPITTLT--NAARLAAGGNTSAALTTNGTVSTWGLNSSGQL--GDNTTASRTTIAPVLR 656

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            V   V + +G  +  +  G  H  A+  DG++ S+G  D G++G G  V   +P+    
Sbjct: 657 TVYPTVEVFSG--VASLGAGTAHLTAVKTDGYVHSWGLNDSGQIGDGTLVN--RPLPTAA 712

Query: 335 NIP 337
            +P
Sbjct: 713 LLP 715



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 165/408 (40%), Gaps = 91/408 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ AWG    G LG  +N        V+ L    V ++ A    S A+  DG   
Sbjct: 61  LKSDGTVWAWGLNTYGNLG--DNTTTTRTKPVQVLNLTGVIAIAADYYQSFALKSDGTVW 118

Query: 60  ---------------KTENIPSQVN-----ALSN-TKIVQAAIGGWHCLAVDDQGRAYAW 98
                           T+ +P+QV       LS  T +V  A G  H LA+   G  ++W
Sbjct: 119 SWGYNGNSALGNASPATQKLPAQVQQSFGGILSPLTDVVAIAAGTHHTLALKSNGTVWSW 178

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N  GQ G         G +  +   +        +   ++AG  HS+ L   G V +W
Sbjct: 179 GLNSSGQLGN--------GTLATQSAAVQAVNLTDAVA--ISAGAAHSLALRANGAVVSW 228

Query: 159 GQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           G         G     + PV V GL  +K +A G  H+LAL+ DG + AWG N YGQ+G 
Sbjct: 229 GANTYGQLGNGTTTTSASPVGVSGLNNIKSLAAGGNHSLALKSDGTVTAWGYNAYGQVGN 288

Query: 215 GDTQPRSQPIPVQGLSGLTLVD-------------------------------------- 236
           G T     PI V  LSG+T V                                       
Sbjct: 289 GATANVLSPIAVSTLSGVTAVSAGVSHSHAIGSSNGVIWGWGLNTYGGLGNNTKVNRSTP 348

Query: 237 -----------IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
                      +A G  H+  +  DG V+ WG   +G++G  D     ++ P +++ L G
Sbjct: 349 GTILLTSGLQGVAGGAQHTIYVKGDGTVWAWGSNTYGQIG--DGTPLRRLTPVQLSTLTG 406

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             I+ V+ G  HS+AL  +G +F++GR +HG+LG G       P +VP
Sbjct: 407 --IIAVAAGANHSLALAANGTVFAWGRNNHGQLGDGSTTNRSLPTQVP 452



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 159/347 (45%), Gaps = 33/347 (9%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           W SG +    +GN    + +  V+      V SV AG  +SLA+  DG            
Sbjct: 18  WASGYNYHGELGNGTATDSLSPVQVSNLTGVISVAAGYYHSLALKSDGTVWAWGLNTYGN 77

Query: 58  ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPER 112
                T T   P QV  L+ T ++  A   +   A+   G  ++WG N     G   P  
Sbjct: 78  LGDNTTTTRTKPVQV--LNLTGVIAIAADYYQSFALKSDGTVWSWGYNGNSALGNASPAT 135

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK 168
           +    ++ +         +P   V  +AAG  H++ L   G VW+WG         G + 
Sbjct: 136 QKLPAQVQQS---FGGILSPLTDVVAIAAGTHHTLALKSNGTVWSWGLNSSGQLGNGTLA 192

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             S  V+   L     I+ GA H+LAL+ +GA+ +WG N YGQLG G T   + P+ V G
Sbjct: 193 TQSAAVQAVNLTDAVAISAGAAHSLALRANGAVVSWGANTYGQLGNGTTTTSASPVGVSG 252

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+ +    +AAGG HS AL  DG V  WG   +G++G G    ++ + P  V+ L+G  +
Sbjct: 253 LNNIK--SLAAGGNHSLALKSDGTVTAWGYNAYGQVGNG--ATANVLSPIAVSTLSG--V 306

Query: 289 VQVSCGGTHSVAL-TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             VS G +HS A+ + +G I+ +G   +G LG   KV    P  + +
Sbjct: 307 TAVSAGVSHSHAIGSSNGVIWGWGLNTYGGLGNNTKVNRSTPGTILL 353



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 142 GGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
           G  H++ + ++G VW  G  +      G       PV+V  L  V  +A G +H+LAL+ 
Sbjct: 4   GAHHTLAVRQDGTVWASGYNYHGELGNGTATDSLSPVQVSNLTGVISVAAGYYHSLALKS 63

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           DG +WAWG N YG LG   T  R++P+ V  L+G  ++ IAA  + S AL  DG V+ WG
Sbjct: 64  DGTVWAWGLNTYGNLGDNTTTTRTKPVQVLNLTG--VIAIAADYYQSFALKSDGTVWSWG 121

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAG------EDIVQVSCGGTHSVALTRDGHIFSFG 311
              +G    G+   +++ +P +V    G       D+V ++ G  H++AL  +G ++S+G
Sbjct: 122 Y--NGNSALGNASPATQKLPAQVQQSFGGILSPLTDVVAIAAGTHHTLALKSNGTVWSWG 179

Query: 312 RGDHGRLGYGRKVT 325
               G+LG G   T
Sbjct: 180 LNSSGQLGNGTLAT 193


>gi|115378347|ref|ZP_01465512.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310825395|ref|YP_003957753.1| bnr repeat domain-containing protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364660|gb|EAU63730.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398467|gb|ADO75926.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 382

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 163/348 (46%), Gaps = 41/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           S+ AWG+   G    G    R     V  L    + SV AG  +SLA+            
Sbjct: 52  SVWAWGASASGLREEGALSRRFAPVPVPGLS--DIVSVAAGGAHSLAVRADGTLWTWGGN 109

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T    +P QV  LS  + V   +G  H LA+   G  +AWG N++GQ G+ 
Sbjct: 110 PYGQLGDGTTTARALPVQVAGLSGVRAVATGLG--HSLALRADGTVWAWGLNQFGQLGDG 167

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
              +  T R +           P L  VR VAAGG HS+V+  +  VW WG         
Sbjct: 168 TTSQWLTPRPI-----------PGLSGVRSVAAGGFHSLVVRDDDTVWAWGSNDYGELGD 216

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G   + +VP  + GL  V  +A G +H+LA+  DG L AWG N YGQLG G    R+ P 
Sbjct: 217 GSTSRRAVPRAIPGLRNVASVAGGCYHSLAVHADGTLSAWGLNSYGQLGDGTFSNRATPR 276

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           PV GLSG+  V  A   +HS AL  +G V+ WG   +G  G G   + S   P+ V  L+
Sbjct: 277 PVPGLSGVRCV--ATSFFHSLALRAEGTVWAWGLNGYGEQGDGTASRQSP-TPRPVPGLS 333

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G  ++ V+ G  HS+A+  +G + ++G    G+LG G       P+ V
Sbjct: 334 G--VLSVATGTFHSLAVNTNGTVSAWGHNGQGQLGDGTATHRSTPVTV 379



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 139/266 (52%), Gaps = 30/266 (11%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI- 135
           V  + G  H LAV   G  +AWG +  G               LR +  + +R AP  + 
Sbjct: 35  VPLSAGDSHSLAVHADGSVWAWGASASG---------------LREEGALSRRFAPVPVP 79

Query: 136 ----VRQVAAGGTHSVVLTREGHVWTWG-QPWPP---GDIKQISVPVRVQGLEQVKLIAV 187
               +  VAAGG HS+ +  +G +WTWG  P+     G     ++PV+V GL  V+ +A 
Sbjct: 80  GLSDIVSVAAGGAHSLAVRADGTLWTWGGNPYGQLGDGTTTARALPVQVAGLSGVRAVAT 139

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H+LAL+ DG +WAWG N++GQLG G T     P P+ GLSG+    +AAGG+HS  +
Sbjct: 140 GLGHSLALRADGTVWAWGLNQFGQLGDGTTSQWLTPRPIPGLSGVR--SVAAGGFHSLVV 197

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            DD  V+ WG  ++G LG  D   S + VP+ +  L   ++  V+ G  HS+A+  DG +
Sbjct: 198 RDDDTVWAWGSNDYGELG--DGSTSRRAVPRAIPGL--RNVASVAGGCYHSLAVHADGTL 253

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVP 333
            ++G   +G+LG G       P  VP
Sbjct: 254 SAWGLNSYGQLGDGTFSNRATPRPVP 279



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 24/231 (10%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           ++AG +HS+ +  +G VW WG         G + +   PV V GL  +  +A G  H+LA
Sbjct: 37  LSAGDSHSLAVHADGSVWAWGASASGLREEGALSRRFAPVPVPGLSDIVSVAAGGAHSLA 96

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           ++ DG LW WG N YGQLG G T  R+ P+ V GLSG+  V    G  HS AL  DG V+
Sbjct: 97  VRADGTLWTWGGNPYGQLGDGTTTARALPVQVAGLSGVRAVATGLG--HSLALRADGTVW 154

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG  + G+L  GD   S  + P+ +  L+G  +  V+ GG HS+ +  D  ++++G  D
Sbjct: 155 AWGLNQFGQL--GDGTTSQWLTPRPIPGLSG--VRSVAAGGFHSLVVRDDDTVWAWGSND 210

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +G LG G          VP  IP  RN             VA G  H+LA+
Sbjct: 211 YGELGDGST----SRRAVPRAIPGLRNVAS----------VAGGCYHSLAV 247


>gi|195376505|ref|XP_002047037.1| GJ12148 [Drosophila virilis]
 gi|194154195|gb|EDW69379.1| GJ12148 [Drosophila virilis]
          Length = 1053

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 164/370 (44%), Gaps = 68/370 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+   GQLG+G  E+ + +                                   PS
Sbjct: 3   LYCWGNASHGQLGLGGIEDEQIL----------------------------------TPS 28

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           Q+    ++ + Q A G  H L +   G+ YA G N+Y Q G E   K        R + I
Sbjct: 29  QIPWKPDSAVNQVACGHRHTLFLTASGKVYACGSNDYSQLGHELPTK--------RPLQI 80

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-------WPPGDIKQISVPVRVQGL 179
           P+      ++ Q+A G  HS+ LT  G V +WG             D+ Q+   VR    
Sbjct: 81  PE--LEDYVITQIACGSRHSMALTEWGQVLSWGDNECGQLGHASDQDVIQLPKIVRYLVS 138

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ---PIPVQGLSGLTLVD 236
           + V  IA G  H+LAL   G L++WG+N YGQLG       SQ   P+ +  L G+    
Sbjct: 139 KTVVQIACGNNHSLALTCCGELYSWGSNIYGQLGVKSPSELSQCNYPMRLTTLLGIPAAA 198

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           IA GG H+  ++    V+GWGR   G+LG   ND++++  P ++  L    +  V+CG  
Sbjct: 199 IACGGNHTFLISKSSAVFGWGRNNCGQLGL--NDETNRAYPTQLKTLRTLGVRFVACGDE 256

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
            SV LT +G +F+ G G +G+LG+G       P  V          G  + +      VA
Sbjct: 257 FSVFLTNEGGVFTCGAGAYGQLGHGFSSNEMLPRMV------MELMGSTISQ------VA 304

Query: 357 CGGRHTLAIV 366
           CG RHTLA+V
Sbjct: 305 CGNRHTLALV 314



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 146/343 (42%), Gaps = 51/343 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + ++  + A GS +  QLG     +R     +  LE Y +  +  GSR+S+A+ + G+  
Sbjct: 51  LTASGKVYACGSNDYSQLGHELPTKRPLQ--IPELEDYVITQIACGSRHSMALTEWGQVL 108

Query: 61  T-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
           +                   +P  V  L +  +VQ A G  H LA+   G  Y+WG N Y
Sbjct: 109 SWGDNECGQLGHASDQDVIQLPKIVRYLVSKTVVQIACGNNHSLALTCCGELYSWGSNIY 168

Query: 104 GQCG-EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           GQ G + P         +R   ++    A       +A GG H+ ++++   V+ WG+  
Sbjct: 169 GQLGVKSPSELSQCNYPMRLTTLLGIPAAA------IACGGNHTFLISKSSAVFGWGRNN 222

Query: 161 --PWPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                  D    + P +++ L    V+ +A G   ++ L  +G ++  G   YGQLG G 
Sbjct: 223 CGQLGLNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVFTCGAGAYGQLGHGF 282

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           +     P  V  L G T+  +A G  H+ AL    G +YG+G G  G+LG   N KS  +
Sbjct: 283 SSNEMLPRMVMELMGSTISQVACGNRHTLALVPSRGRIYGFGLGSSGQLG-TRNTKSLNL 341

Query: 276 VPQKV----------NLLAGED------IVQVSCGGTHSVALT 302
            PQ V           LL   D      I Q+  GG  S+  T
Sbjct: 342 -PQVVIGPWVSPSGSALLQSSDEKISVVIHQIFSGGDQSIVTT 383



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P ++       + QV+CG  H++ LT  G +++ G
Sbjct: 2   ELYCWGNASHGQLGLGGIEDEQILTPSQIPWKPDSAVNQVACGHRHTLFLTASGKVYACG 61

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+        P + P+ IP   +        ++   +ACG RH++A+ EW
Sbjct: 62  SNDYSQLGHEL------PTKRPLQIPELED--------YVITQIACGSRHSMALTEW 104


>gi|383456202|ref|YP_005370191.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
 gi|380729703|gb|AFE05705.1| RCC1 repeat-containing protein [Corallococcus coralloides DSM 2259]
          Length = 806

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 163/345 (47%), Gaps = 40/345 (11%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           AWG    GQLG G + +R     V+        ++ A + ++LA+  DG           
Sbjct: 464 AWGHNGYGQLGDGTSVDRFLPGPVQVQGLTGATALSATAYHTLALAQDGTVWGWGYNDSG 523

Query: 60  -------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                       P+ +  L  T +   A G +H LA+   G  +AWG N  GQ G+    
Sbjct: 524 QLGDTVDMVRVTPAPLPGL--TGVTALASGTYHSLALKQDGTVWAWGLNNLGQLGD---- 577

Query: 113 KDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQ 169
               G  + R   +P    P L  V  +AA   HS+ L ++G VWTWG       GD   
Sbjct: 578 ----GTTVSRTEQMP---VPGLTDVTALAASTYHSLALKQDGTVWTWGYNSSGQLGDGTT 630

Query: 170 IS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            S   P +V GL  V  IA G  H+LAL++DG +WAWG N  GQLG G       P+ VQ
Sbjct: 631 ASRLTPAQVPGLTGVSAIAAGLVHSLALKQDGTVWAWGRNTDGQLGNGAAVNSPVPVQVQ 690

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+G++   IAAG +HS AL  DG  + WGR   G+LG  +   +  + P +V  L    
Sbjct: 691 GLTGVS--AIAAGSYHSLALKQDGTAWSWGRNGTGQLG--NETITGSLTPVQVQGLTA-- 744

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +  ++ G  HS+AL RDG ++++G    G LG G  +    P+ V
Sbjct: 745 VTALAGGDAHSMALLRDGTVWTWGYNAEGELGDGTTLDRTAPVRV 789



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 143/263 (54%), Gaps = 20/263 (7%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           ++   A GG H L V   G A AWG N YGQ G+        G  + R +  P +     
Sbjct: 442 RVTWIAAGGAHSLVVRQDGTADAWGHNGYGQLGD--------GTSVDRFLPGPVQVQGLT 493

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGA 189
               ++A   H++ L ++G VW WG     Q     D+ +++ P  + GL  V  +A G 
Sbjct: 494 GATALSATAYHTLALAQDGTVWGWGYNDSGQLGDTVDMVRVT-PAPLPGLTGVTALASGT 552

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           +H+LAL++DG +WAWG N  GQLG G T  R++ +PV GL+ +T   +AA  +HS AL  
Sbjct: 553 YHSLALKQDGTVWAWGLNNLGQLGDGTTVSRTEQMPVPGLTDVT--ALAASTYHSLALKQ 610

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG    G+LG  D   +S++ P +V  L G  +  ++ G  HS+AL +DG +++
Sbjct: 611 DGTVWTWGYNSSGQLG--DGTTASRLTPAQVPGLTG--VSAIAAGLVHSLALKQDGTVWA 666

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV 332
           +GR   G+LG G  V +  P++V
Sbjct: 667 WGRNTDGQLGNGAAVNSPVPVQV 689



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/321 (34%), Positives = 153/321 (47%), Gaps = 40/321 (12%)

Query: 34  ALEPYKVRSVVAGSRNSLAICDDGK---------------TKTENI---PSQVNALSNTK 75
           A  P +V  + AG  +SL +  DG                T  +     P QV  L+   
Sbjct: 437 APSPRRVTWIAAGGAHSLVVRQDGTADAWGHNGYGQLGDGTSVDRFLPGPVQVQGLTGAT 496

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
            + A    +H LA+   G  + WG N+ GQ G       DT  ++R   V P        
Sbjct: 497 ALSAT--AYHTLALAQDGTVWGWGYNDSGQLG-------DTVDMVR---VTPAPLPGLTG 544

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVP--VRVQGLEQVKLIAVGAFH 191
           V  +A+G  HS+ L ++G VW WG       GD   +S    + V GL  V  +A   +H
Sbjct: 545 VTALASGTYHSLALKQDGTVWAWGLNNLGQLGDGTTVSRTEQMPVPGLTDVTALAASTYH 604

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +LAL++DG +W WG N  GQLG G T  R  P  V GL+G++   IAAG  HS AL  DG
Sbjct: 605 SLALKQDGTVWTWGYNSSGQLGDGTTASRLTPAQVPGLTGVS--AIAAGLVHSLALKQDG 662

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            V+ WGR   G+LG G    S   VP +V  L G  +  ++ G  HS+AL +DG  +S+G
Sbjct: 663 TVWAWGRNTDGQLGNGAAVNSP--VPVQVQGLTG--VSAIAAGSYHSLALKQDGTAWSWG 718

Query: 312 RGDHGRLGYGRKVTTGQPMEV 332
           R   G+LG      +  P++V
Sbjct: 719 RNGTGQLGNETITGSLTPVQV 739



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 144/302 (47%), Gaps = 45/302 (14%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEP--YKVRSVVAGSRNSLAICDDGK--------- 58
           WG  + GQLG    +  + V V  A  P    V ++ +G+ +SLA+  DG          
Sbjct: 517 WGYNDSGQLG----DTVDMVRVTPAPLPGLTGVTALASGTYHSLALKQDGTVWAWGLNNL 572

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    ++TE +P  V  L++   + A+   +H LA+   G  + WG N  GQ G+ 
Sbjct: 573 GQLGDGTTVSRTEQMP--VPGLTDVTALAAST--YHSLALKQDGTVWTWGYNSSGQLGD- 627

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R  + P +      V  +AAG  HS+ L ++G VW WG+        G
Sbjct: 628 -------GTTASR--LTPAQVPGLTGVSAIAAGLVHSLALKQDGTVWAWGRNTDGQLGNG 678

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 VPV+VQGL  V  IA G++H+LAL++DG  W+WG N  GQLG         P+ 
Sbjct: 679 AAVNSPVPVQVQGLTGVSAIAAGSYHSLALKQDGTAWSWGRNGTGQLGNETITGSLTPVQ 738

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLA 284
           VQGL+ +T   +A G  HS AL  DG V+ WG    G LG G   D+++ +  Q + L A
Sbjct: 739 VQGLTAVT--ALAGGDAHSMALLRDGTVWTWGYNAEGELGDGTTLDRTAPVRVQGLVLEA 796

Query: 285 GE 286
           G 
Sbjct: 797 GR 798



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 112/211 (53%), Gaps = 13/211 (6%)

Query: 130 CAPK-LIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQISV----PVRVQGLEQV 182
           CAP    V  +AAGG HS+V+ ++G    WG       GD   +      PV+VQGL   
Sbjct: 436 CAPSPRRVTWIAAGGAHSLVVRQDGTADAWGHNGYGQLGDGTSVDRFLPGPVQVQGLTGA 495

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
             ++  A+H LAL +DG +W WG N+ GQLG      R  P P+ GL+G+T   +A+G +
Sbjct: 496 TALSATAYHTLALAQDGTVWGWGYNDSGQLGDTVDMVRVTPAPLPGLTGVT--ALASGTY 553

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           HS AL  DG V+ WG    G+LG G     ++ +P    +    D+  ++    HS+AL 
Sbjct: 554 HSLALKQDGTVWAWGLNNLGQLGDGTTVSRTEQMP----VPGLTDVTALAASTYHSLALK 609

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +DG ++++G    G+LG G   +   P +VP
Sbjct: 610 QDGTVWTWGYNSSGQLGDGTTASRLTPAQVP 640


>gi|449275747|gb|EMC84515.1| putative E3 ubiquitin-protein ligase HERC2 [Columba livia]
          Length = 4840

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 185/394 (46%), Gaps = 52/394 (13%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3958 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 4017

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 4018 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 4077

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++     I         V  VAAGG HS  +T  G ++TWG+       
Sbjct: 4078 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACITAAGDLFTWGKGRYGRLG 4129

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 4130 HGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 4189

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQ 278
               P+ +  L+GL +V +  G   S ALT  G VY W    ++ RLG G +D   +  P+
Sbjct: 4190 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWQVFRDYHRLGHGSDDHVRR--PR 4247

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            +V  L G+ ++ ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A
Sbjct: 4248 QVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAA 4303

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
             +  G  ++R      VACG  HTLA   W T +
Sbjct: 4304 LQ--GKKINR------VACGSAHTLA---WSTSK 4326



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2985 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3035

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 3036 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3095

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3096 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3155

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3156 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3213

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3214 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3262

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3263 IVH-VAVGALHCLAVTD 3278



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 167/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  V    +  L +  +G+  T+        P  V +L++  IV+ A    G H LA+  
Sbjct: 454 VVQVACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIAAHSDGHHYLALSA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  ++WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 514 NGEVFSWG------CG-------DGGRLGHGDTVPLEE--PKMISALSGKQAGKHVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDIVKVRCGSQFSIALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYTWGKGDNQRLGHGTEEHVR--YPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 153/316 (48%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  +VQ A      L +   GR Y    N            D  G  L    
Sbjct: 443 PIQCEGLANLGVVQVACAEKRFLILSRNGRVYTQAYN-----------SDTLGPQLV--- 488

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
              Q  A + IV+  A + G H + L+  G V++WG             P  + K IS  
Sbjct: 489 ---QSLASRNIVKIAAHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKMISAL 545

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL GL 
Sbjct: 546 SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLK 605

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   DIV+V
Sbjct: 606 VIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDIVKV 663

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   S+ALT+DG ++++G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 664 RCGSQFSIALTKDGQVYTWGKGDNQRLGHGTEEHVRYPKLL-----------EGLKGKKV 712

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 713 ID-VAAGSTHCLALTE 727



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 156/334 (46%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     +   + AL  Y V+ V   +G R+++A+  DGK  +  
Sbjct: 3017 VYACGEATNGRLGLGISSGTVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWG 3076

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 3077 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLG 3136

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 3137 H----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 3181

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 3182 GD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 3238 YFRLGHGTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGT 3297

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3298 TTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3329



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 24/252 (9%)

Query: 93   GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLT 150
            G  Y WG N  GQ G           I    + +P  C     +R  Q+  G      +T
Sbjct: 3957 GTIYGWGHNHRGQLGG----------IEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 4006

Query: 151  REGHVWTWG----QPWPPGDIKQISVPVRVQGLEQV--KLIAV--GAFHNLALQEDGALW 202
             +G ++  G         G  + +S P  ++ ++ V  K +AV  G  H LAL  +G ++
Sbjct: 4007 ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 4066

Query: 203  AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
            +WG  E G+LG G+  P  +P  ++ L G+ +VD+AAGG HS  +T  G+++ WG+G +G
Sbjct: 4067 SWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACITAAGDLFTWGKGRYG 4126

Query: 263  RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGY 320
            RLG GD++   K  P+ V  L G  ++ ++CG     ++ LT D  ++S+G GD+G+LG 
Sbjct: 4127 RLGHGDSEDQLK--PKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR 4184

Query: 321  GRKVTTGQPMEV 332
            G       PM++
Sbjct: 4185 GGSDGCKVPMKI 4196



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 49/279 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  V AG  +S  I   G   
Sbjct: 4059 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACITAAGDLF 4118

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   +++  A G      L + D    ++WG  +
Sbjct: 4119 TWGKGRYGRLGHGDSEDQLKPKLVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGD 4178

Query: 103  YGQCG-------EEPERKDD-TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            YG+ G       + P + D  TG                L V +V  G   SV LT+ G 
Sbjct: 4179 YGKLGRGGSDGCKVPMKIDSLTG----------------LGVVKVECGSQFSVALTKSGA 4222

Query: 155  VWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNN 207
            V+TW           G    +  P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N
Sbjct: 4223 VYTWQVFRDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 4282

Query: 208  EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            + GQLG G T    +P  V  L G  +  +A G  H+ A
Sbjct: 4283 DEGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTLA 4321



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +++   + +WG G+ G+LG G+    E   ++ AL   +    V  +  GS  S AI  +
Sbjct: 511 LSANGEVFSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                + IP  V  L   K++  + G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   S+ LT++G V+TW
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDIVKVRCGSQFSIALTKDGQVYTW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLKGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 776



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 46/158 (29%)

Query: 221 SQPIPVQGLSGLTLVDIAAG---------------------------------------- 240
           S PI  +GL+ L +V +A                                          
Sbjct: 441 SGPIQCEGLANLGVVQVACAEKRFLILSRNGRVYTQAYNSDTLGPQLVQSLASRNIVKIA 500

Query: 241 ----GWHSTALTDDGEVYGWGRGEHGRLGFGDN--DKSSKMVPQKVNLLAGEDIVQVSCG 294
               G H  AL+ +GEV+ WG G+ GRLG GD    +  KM+       AG+ +V ++CG
Sbjct: 501 AHSDGHHYLALSANGEVFSWGCGDGGRLGHGDTVPLEEPKMISALSGKQAGKHVVHIACG 560

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            T+S A+T +G ++++GRG++GRLG+G       PM V
Sbjct: 561 STYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLV 598



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3118 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3177

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3178 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3237

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3238 YFRLGH------GTDVHVRKPQVVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3289

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3290 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3327


>gi|194767960|ref|XP_001966082.1| GF19414 [Drosophila ananassae]
 gi|190622967|gb|EDV38491.1| GF19414 [Drosophila ananassae]
          Length = 5087

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 175/394 (44%), Gaps = 48/394 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG       +     +AL   +   +  G ++  A+  DGK      
Sbjct: 4224 STIYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGY 4283

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + +  IP+ + +L +  + + A+  GG HCLA+  +G  YAWG  E G+ 
Sbjct: 4284 GSGGRLGVGGSDSWAIPTLLGSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKL 4343

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       D  +++             + V  +A G  HS  +T  G V TWG+      
Sbjct: 4344 GHGNRVSYDRPKLVEH--------LHGMSVADIACGSAHSAAITASGQVLTWGKGRYGRL 4395

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD +    P  V+ L   + I +    G    L + +D  +W+WG+ +YG+LG G + 
Sbjct: 4396 GHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSD 4455

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  ++ L+GL ++ +  G   S ALT  G VY WG+G+  RLG G  D   +  P+
Sbjct: 4456 GCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PK 4513

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G      +P  V      
Sbjct: 4514 KVAALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLV------ 4567

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                   +  + I K V CG  HTLA+   Q  E
Sbjct: 4568 -----SALQGKHIVK-VTCGSAHTLALSTSQLSE 4595



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 177/385 (45%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  +G+       
Sbjct: 3075 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQEGRVFACGEG 3134

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 3135 TNGRLGLGVTYNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 3194

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R       +    A K  +R VA G +HS  ++ +G ++TWG        
Sbjct: 3195 HGNRTTLDKPR------QVEALRAKK--IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 3246

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   +++ V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 3247 HGDNATQLKPKLVAALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 3306

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ ++ I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 3307 SDTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 3364

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 3365 IGGLRGRRVIHVAVGALHCLAVTDSGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 3417

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 3418 ----IGLDDVFVNR-VACGSSHSIA 3437



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 164/319 (51%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  A G      V  +GR +A G    G+ G            +  
Sbjct: 3096 KVPTFSQTISRLRPIHIAGGSKSLFIVSQEGRVFACGEGTNGRLGLG----------VTY 3145

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 3146 NVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 3205

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            +V+ L  ++++ +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 3206 QVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNATQLKPKLVAALAGR 3265

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             +V +A G     + ALT+DG V+ WG G+ G+LG G ++ S    P ++  L+G  ++Q
Sbjct: 3266 RVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSD--TPHEIERLSGIGVIQ 3323

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+            G    R
Sbjct: 3324 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI------------GGLRGR 3371

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R I   VA G  H LA+ +
Sbjct: 3372 RVIH--VAVGALHCLAVTD 3388



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 154/328 (46%), Gaps = 33/328 (10%)

Query: 38  YKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAA--IGGWHCLAV 89
           ++V+ VV      L +  +GK      +K E  P  +    +   +  A    G H +A+
Sbjct: 587 FQVKQVVCSENQVLLLSQEGKLHAWRLSKPEAEPQPLEEAGHETFISIAGHCEGRHFMAI 646

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV-IPQRCAPKLIVRQVAAGGTHSVV 148
           D    AY+WG  E  + G      D   R +   I  + Q C     V+ V  G T+S V
Sbjct: 647 DSNHNAYSWGAGEDHRLGH----GDTHARAVPTKIAALEQHC-----VQSVFCGCTYSAV 697

Query: 149 LTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGA 200
           +T  G++ TWG+        G+     +P  V  L +  ++ V    G  H+LAL  +G 
Sbjct: 698 ITCGGNLLTWGRGTYARLGHGNSDDRCLPTLVAALAEHTVVDVALGSGDAHSLALTSEGL 757

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++AWG+ +YG+LG G+     QPI V+ L  +    I AG  +S AL+ +G+VY WG+  
Sbjct: 758 VFAWGDGDYGKLGNGNCNGSLQPILVESLPRVQ--RIFAGSQYSVALSSEGQVYTWGKAT 815

Query: 261 HGRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              LG    ++S +   VP+ V+ L  + IV ++ G  H +AL+  G +F +GR D  ++
Sbjct: 816 C--LGHQLVERSVQGCSVPRLVSSLQHKRIVDMAVGVAHCLALSSSGEVFGWGRNDCQQV 873

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGV 346
                V++   +  PI +  P     G+
Sbjct: 874 -CPSSVSSEPLLRSPILVALPTLPASGI 900



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 43/285 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--------------- 47
           S  +  +WG+GED +LG G+   R     + ALE + V+SV  G                
Sbjct: 648 SNHNAYSWGAGEDHRLGHGDTHARAVPTKIAALEQHCVQSVFCGCTYSAVITCGGNLLTW 707

Query: 48  -RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
            R + A    G +    +P+ V AL+   +V  A+G    H LA+  +G  +AWG  +YG
Sbjct: 708 GRGTYARLGHGNSDDRCLPTLVAALAEHTVVDVALGSGDAHSLALTSEGLVFAWGDGDYG 767

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           + G      +  G +  + I++     P+  V+++ AG  +SV L+ EG V+TWG+    
Sbjct: 768 KLGN----GNCNGSL--QPILV--ESLPR--VQRIFAGSQYSVALSSEGQVYTWGKATCL 817

Query: 165 G------DIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
           G       ++  SVP  V  L+  +++  AVG  H LAL   G ++ WG N+  Q+    
Sbjct: 818 GHQLVERSVQGCSVPRLVSSLQHKRIVDMAVGVAHCLALSSSGEVFGWGRNDCQQVCPSS 877

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
               S+P+ ++    + L  + A G   TA    G+   W +  H
Sbjct: 878 VS--SEPL-LRSPILVALPTLPASGIACTA----GQSLIWTQSSH 915



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 26/172 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG G+ G+LG GN        +V++L   +V+ + AGS+ S+A+  +G+  
Sbjct: 752 LTSEGLVFAWGDGDYGKLGNGNCNGSLQPILVESLP--RVQRIFAGSQYSVALSSEGQVY 809

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           T                   ++P  V++L + +IV  A+G  HCLA+   G  + WG N+
Sbjct: 810 TWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDMAVGVAHCLALSSSGEVFGWGRND 869

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
              C +       +  +LR  I++     P L    +A     S++ T+  H
Sbjct: 870 ---CQQVCPSSVSSEPLLRSPILV---ALPTLPASGIACTAGQSLIWTQSSH 915



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 101/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 3228 ISSQGELYTWGLGEYGRLGHGDNATQLKPKLVAALAGRRVVQVACGSRDAQTLALTEDGA 3287

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  + P ++  LS   ++Q   G    LA+   G  + WG  +
Sbjct: 3288 VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVIQIECGAQFSLALTRAGEVWTWGKGD 3347

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 3348 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDSGQVYAW- 3395

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 3396 ---------------------------------------------GDNDHGQQGSGNTFV 3410

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 3411 NKKPALVIGLDDVFVNRVACGSSHSIA 3437



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 53/270 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--RNSLAICDD-- 56
            + ++  ++ WG G  G+LG G++E++    +V+AL  Y+   +  GS    +L I DD  
Sbjct: 4378 ITASGQVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDN 4437

Query: 57   --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G +    +P ++ +L+   +++   G    +A+   G  Y WG  +
Sbjct: 4438 VWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVIKVECGSQFSVALTKSGAVYTWGKGD 4497

Query: 103  YGQCGEEPERKDDTGRI--LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + + G         G +  +RR   +      K+I   +A G  H V  +  G V+TWG 
Sbjct: 4498 FHRLGH--------GSVDHVRRPKKVAALQGKKII--SIATGSLHCVACSDSGEVYTWGD 4547

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G +  I  P  V  L+   ++ V  G+ H LA                 L T
Sbjct: 4548 NDEGQLGDGTVTAIQRPRLVSALQGKHIVKVTCGSAHTLA-----------------LST 4590

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
                 R +P+P   L    + D+A    H+
Sbjct: 4591 SQLSERLRPLPNPPLEYDLVRDLAPEALHA 4620


>gi|61563742|ref|NP_060382.3| probable E3 ubiquitin-protein ligase HERC6 isoform 1 [Homo sapiens]
 gi|74750679|sp|Q8IVU3.2|HERC6_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC6; AltName:
           Full=HECT domain and RCC1-like domain-containing protein
           6
 gi|48686728|gb|AAQ14893.1|AF336798_1 HERC6 [Homo sapiens]
 gi|66840150|gb|AAH42047.2| Hect domain and RLD 6 [Homo sapiens]
 gi|194381386|dbj|BAG58647.1| unnamed protein product [Homo sapiens]
          Length = 1022

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 145/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 70/329 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L++ KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS-- 207

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEY 209
                 Q+++  R   ++  K ++VGA  NL              L +DG ++ +G+N  
Sbjct: 208 --NSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRS 265

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+    G G +
Sbjct: 266 GQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVVSFGHGPS 317

Query: 270 DKSSKMVPQKVN-------LLAGEDIVQV 291
           D S    P+ +        L++ ED V V
Sbjct: 318 DTSKPTHPEALTENFDISCLISAEDFVDV 346



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L    I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKIMTLNDIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 64/235 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG    GQLG+G     +         P +VRS+                 
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQA-------SPQRVRSL----------------- 178

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR-- 118
            E IP          + Q A GG H  A+   G ++ WG N  GQ          +GR  
Sbjct: 179 -EGIP----------LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLAL-------SGRNV 220

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWPPGDIKQ 169
            ++ +  +       L V  ++ G  H+ VLT++G V+T+G          P P     Q
Sbjct: 221 PVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQ 280

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLA-LQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           +    R+ GL  V  I  G++H LA +   G + ++G+      G  DT   + P
Sbjct: 281 LV--ERIDGL--VSQIDCGSYHTLAYVHTTGQVVSFGH------GPSDTSKPTHP 325


>gi|225464728|ref|XP_002264236.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis
           vinifera]
          Length = 489

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 182/414 (43%), Gaps = 65/414 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALE--------PYKVRSVVAGSRNSLAIC 54
           +T  +++WG G  GQLG G  E R +   V  L         P   R  +    N+  + 
Sbjct: 33  TTVQLLSWGRGASGQLGGGIEEMRLYPSPVATLHLPPSFNLCPIPGRLCLPSVENASGLT 92

Query: 55  D--------------DGKT------------KTENIPSQVNALSNT--KIVQAAIGGWHC 86
           +              DGK               +  P+ +  L+     I   A+GG H 
Sbjct: 93  EVGISCGLFHSSLVVDGKLWIWGKGDGGRLGFGQEYPAFLPTLNPNLDSIRSTALGGVHS 152

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHS 146
           +A+   G+ + WG   +G  G     ++   R++               +R +A  GTH+
Sbjct: 153 VALSSLGQVFTWGYGGFGALGHSVYHRELLPRMVEGSW--------NAKIRHIATAGTHT 204

Query: 147 VVLTREGHVWTWGQP-----------WPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLA 194
             +T  G ++TWG+              P +   +S+P +V+ L   V  ++ G F  + 
Sbjct: 205 AAITESGELYTWGRDQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVAAVSCGGFFTMV 264

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L ++G LW WG N   +LG GD     +P P+  L  + ++ IA+GG+HS ALTDDG+V 
Sbjct: 265 LTQEGQLWNWGANSNYELGRGDKVGGWKPQPIPSLQDVRIIQIASGGYHSLALTDDGKVL 324

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG G+HG+L  G +   ++ +P  +  LA E ++ ++CGG+ S A+T +G ++ +G   
Sbjct: 325 SWGYGQHGQL--GHSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGKLYMWGNAK 382

Query: 315 HGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             +LG  G   T   P+EV   +   R     V        VA G  H + +V 
Sbjct: 383 DSQLGVPGLPETQPLPVEVKFLMEDDRLGPHNVLS------VAVGASHAMCLVS 430


>gi|259089405|ref|NP_001158608.1| probable E3 ubiquitin-protein ligase HERC6 isoform 2 [Homo sapiens]
 gi|55832764|gb|AAV66895.1| HERC6 splice variant [Homo sapiens]
          Length = 986

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 145/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 70/329 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L++ KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS-- 207

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEY 209
                 Q+++  R   ++  K ++VGA  NL              L +DG ++ +G+N  
Sbjct: 208 --NSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRS 265

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+    G G +
Sbjct: 266 GQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVVSFGHGPS 317

Query: 270 DKSSKMVPQKVN-------LLAGEDIVQV 291
           D S    P+ +        L++ ED V V
Sbjct: 318 DTSKPTHPEALTENFDISCLISAEDFVDV 346



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L    I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKIMTLNDIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 64/235 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG    GQLG+G     +         P +VRS+                 
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQ-------ASPQRVRSL----------------- 178

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR-- 118
            E IP          + Q A GG H  A+   G ++ WG N  GQ          +GR  
Sbjct: 179 -EGIP----------LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLAL-------SGRNV 220

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWPPGDIKQ 169
            ++ +  +       L V  ++ G  H+ VLT++G V+T+G          P P     Q
Sbjct: 221 PVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQ 280

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLA-LQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           +    R+ GL  V  I  G++H LA +   G + ++G+      G  DT   + P
Sbjct: 281 LV--ERIDGL--VSQIDCGSYHTLAYVHTTGQVVSFGH------GPSDTSKPTHP 325


>gi|108756969|ref|YP_633591.1| RCC1 repeat-containing protein [Myxococcus xanthus DK 1622]
 gi|108460849|gb|ABF86034.1| RCC1 repeat domain protein [Myxococcus xanthus DK 1622]
          Length = 669

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 166/348 (47%), Gaps = 39/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLA------------- 52
           ++ +WG    GQLG   N  R     V  L      +V  G  +SLA             
Sbjct: 341 TLWSWGHNSFGQLGDETNATRHAPVQVPGLT--DATAVAGGHAHSLASRADGTVWAWGLN 398

Query: 53  --ICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T T+  P QV+ L  T  +  A G    LA+D  G  +AWG N  G+ G+  
Sbjct: 399 GGALGDGTTSTQYAPVQVSGL--TGAISVAAGSSFSLALDADGTVWAWGMNGSGELGDG- 455

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIK 168
                       D + P R +    +  +AAG  HS+ L  +G VW WG  +    GD  
Sbjct: 456 ---------TTTDRLTPVRVSGLSNITALAAGTGHSLALGADGTVWAWGLNFHGELGDGT 506

Query: 169 QIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            +S  +PV+V GL  V  +A G +H++AL+ DG +WAWG N  G+LG G T  R  P+ V
Sbjct: 507 TVSRPLPVQVPGLTGVIAVAAGMYHSVALRNDGTVWAWGWNLKGELGDGTTTQRESPVQV 566

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            G++G   + +AAGG+HS AL  D  +  WG+ E  +LG G N      V  +V+ L G 
Sbjct: 567 PGVTGA--IAVAAGGYHSLALLSDNTLRAWGKNEDRQLGDGTNTDRHTAV--QVSGLTG- 621

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +  V  GG HS+ L  D  +++FG    G+LG G   +   P++V +
Sbjct: 622 -VTSVFAGGGHSLILRNDQAVWAFGSDVSGQLGDGNTPSGHGPVQVSL 668



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G  ++WG N +GQ G+E      T       + +P           VA G  
Sbjct: 332 HSLAIRGNGTLWSWGHNSFGQLGDE------TNATRHAPVQVPGL----TDATAVAGGHA 381

Query: 145 HSVVLTREGHVWTWGQ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
           HS+    +G VW WG        G       PV+V GL     +A G+  +LAL  DG +
Sbjct: 382 HSLASRADGTVWAWGLNGGALGDGTTSTQYAPVQVSGLTGAISVAAGSSFSLALDADGTV 441

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           WAWG N  G+LG G T  R  P+ V GLS +T   +AAG  HS AL  DG V+ WG   H
Sbjct: 442 WAWGMNGSGELGDGTTTDRLTPVRVSGLSNITA--LAAGTGHSLALGADGTVWAWGLNFH 499

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G L  GD    S+ +P +V  L G  ++ V+ G  HSVAL  DG ++++G    G LG G
Sbjct: 500 GEL--GDGTTVSRPLPVQVPGLTG--VIAVAAGMYHSVALRNDGTVWAWGWNLKGELGDG 555

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
                  P++VP           GV     A  VA GG H+LA++   T
Sbjct: 556 TTTQRESPVQVP-----------GVTG---AIAVAAGGYHSLALLSDNT 590



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 19/211 (9%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRVQGLEQV 182
           AP+     V+ G +HS+ +   G +W+WG         Q+          PV+V GL   
Sbjct: 318 APRCPGPVVSGGVSHSLAIRGNGTLWSWGH----NSFGQLGDETNATRHAPVQVPGLTDA 373

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
             +A G  H+LA + DG +WAWG N  G LG G T  +  P+ V GL+G   + +AAG  
Sbjct: 374 TAVAGGHAHSLASRADGTVWAWGLNG-GALGDGTTSTQYAPVQVSGLTG--AISVAAGSS 430

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            S AL  DG V+ WG    G L  GD   + ++ P +V+ L+  +I  ++ G  HS+AL 
Sbjct: 431 FSLALDADGTVWAWGMNGSGEL--GDGTTTDRLTPVRVSGLS--NITALAAGTGHSLALG 486

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            DG ++++G   HG LG G  V+   P++VP
Sbjct: 487 ADGTVWAWGLNFHGELGDGTTVSRPLPVQVP 517


>gi|119626424|gb|EAX06019.1| hect domain and RLD 6, isoform CRA_b [Homo sapiens]
          Length = 1028

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 145/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 70/329 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L++ KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS-- 207

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEY 209
                 Q+++  R   ++  K ++VGA  NL              L +DG ++ +G+N  
Sbjct: 208 --NSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRS 265

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+    G G +
Sbjct: 266 GQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVVSFGHGPS 317

Query: 270 DKSSKMVPQKVN-------LLAGEDIVQV 291
           D S    P+ +        L++ ED V V
Sbjct: 318 DTSKPTHPEALTENFDISCLISAEDFVDV 346



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L    I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKIMTLNDIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 64/235 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG    GQLG+G     +         P +VRS+                 
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQA-------SPQRVRSL----------------- 178

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR-- 118
            E IP          + Q A GG H  A+   G ++ WG N  GQ          +GR  
Sbjct: 179 -EGIP----------LAQVAAGGAHSFALSLCGTSFGWGSNSAGQLAL-------SGRNV 220

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWPPGDIKQ 169
            ++ +  +       L V  ++ G  H+ VLT++G V+T+G          P P     Q
Sbjct: 221 PVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQ 280

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLA-LQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           +    R+ GL  V  I  G++H LA +   G + ++G+      G  DT   + P
Sbjct: 281 LV--ERIDGL--VSQIDCGSYHTLAYVHTTGQVVSFGH------GPSDTSKPTHP 325


>gi|452823021|gb|EME30035.1| E3 ubiquitin-protein ligase HERC2 [Galdieria sulphuraria]
          Length = 432

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 165/348 (47%), Gaps = 42/348 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + + T +  +G    GQLG G+    +    V+AL   ++  V AG   + AI  DG   
Sbjct: 54  LENGTLLTTFGLNLIGQLGQGHERPADRPFPVEALSGKRIVYVAAGDSCTAAISLDGDVY 113

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T                EN+P  V AL    IV+ +IGG H  A+D  G  Y WG     
Sbjct: 114 TWGSGEYGKLGHNDDSNENLPRLVEALKGKNIVKVSIGGNHMAAIDKDGHLYCWG----- 168

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQP 161
                  R    G      + IP+     L    V  V+ G +H+  +T +G VWTWG  
Sbjct: 169 -------RAASAGSGGTEHVFIPRLIKGDLEKEKVISVSCGRSHTAAVTEKGEVWTWGNG 221

Query: 162 WP----PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
           +      G+      P +VQ L E+V  +A G    + + E G L++ G ++YGQLG G 
Sbjct: 222 YEGELGHGEKNSQYQPKKVQSLTEKVVDVACGRDFTIFVCESG-LYSCGADDYGQLGLGR 280

Query: 217 TQPRSQPIPVQGLSGLTLVD---IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           +         + LSG  L D   I+AG +H  AL  DG VY WG G  G+LG G+    S
Sbjct: 281 SHGERFVQTPRSLSGTGLSDVVAISAGDYHVCALGRDGLVYTWGLGREGQLGHGEKADCS 340

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              P  V+ L   +IVQV+CGG H+ A+T+DG ++++GRG  G+LG G
Sbjct: 341 LAKP--VDNLRNFEIVQVACGGGHTAAVTKDGVLYTWGRGRDGQLGRG 386



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 158/319 (49%), Gaps = 32/319 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G  +  + P  V ALS  +IV  A G     A+   G  Y WG  EYG+ G   +  ++ 
Sbjct: 74  GHERPADRPFPVEALSGKRIVYVAAGDSCTAAISLDGDVYTWGSGEYGKLGHNDDSNENL 133

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD--IKQISVPV 174
            R++       +    K IV+ V+ GG H   + ++GH++ WG+    G    + + +P 
Sbjct: 134 PRLV-------EALKGKNIVK-VSIGGNHMAAIDKDGHLYCWGRAASAGSGGTEHVFIPR 185

Query: 175 RVQG-LEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            ++G LE+ K+I+V  G  H  A+ E G +W WGN   G+LG G+   + QP  VQ L+ 
Sbjct: 186 LIKGDLEKEKVISVSCGRSHTAAVTEKGEVWTWGNGYEGELGHGEKNSQYQPKKVQSLTE 245

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG-DNDKSSKMVPQKVNLLAGEDIVQ 290
             +VD+A G   +  + + G +Y  G  ++G+LG G  + +     P+ ++     D+V 
Sbjct: 246 -KVVDVACGRDFTIFVCESG-LYSCGADDYGQLGLGRSHGERFVQTPRSLSGTGLSDVVA 303

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK--VTTGQPMEVPINIPAPRNAGDGVDR 348
           +S G  H  AL RDG ++++G G  G+LG+G K   +  +P++   N    +        
Sbjct: 304 ISAGDYHVCALGRDGLVYTWGLGREGQLGHGEKADCSLAKPVDNLRNFEIVQ-------- 355

Query: 349 RWIAKLVACGGRHTLAIVE 367
                 VACGG HT A+ +
Sbjct: 356 ------VACGGGHTAAVTK 368



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 15/174 (8%)

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+    L  +G N  GQLG G  +P  +P PV+ LSG  +V +AAG   + A++ DG+V
Sbjct: 53  ALENGTLLTTFGLNLIGQLGQGHERPADRPFPVEALSGKRIVYVAAGDSCTAAISLDGDV 112

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           Y WG GE+G+LG   ND S++ +P+ V  L G++IV+VS GG H  A+ +DGH++     
Sbjct: 113 YTWGSGEYGKLGH--NDDSNENLPRLVEALKGKNIVKVSIGGNHMAAIDKDGHLYC---- 166

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                 +GR  + G      + IP     GD    + I+  V+CG  HT A+ E
Sbjct: 167 ------WGRAASAGSGGTEHVFIPRLIK-GDLEKEKVIS--VSCGRSHTAAVTE 211



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 137/319 (42%), Gaps = 25/319 (7%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  WGSGE G+LG  ++       +V+AL+   +  V  G  +  AI  DG         
Sbjct: 112 VYTWGSGEYGKLGHNDDSNENLPRLVEALKGKNIVKVSIGGNHMAAIDKDGHLYCWGRAA 171

Query: 59  ------TKTENIPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 T+   IP  +   L   K++  + G  H  AV ++G  + WG    G+ G   +
Sbjct: 172 SAGSGGTEHVFIPRLIKGDLEKEKVISVSCGRSHTAAVTEKGEVWTWGNGYEGELGHGEK 231

Query: 112 RKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD-IK 168
                 + ++   + V+   C     +  V   G +S      G +   G     G+   
Sbjct: 232 NSQYQPKKVQSLTEKVVDVACGRDFTIF-VCESGLYSCGADDYGQL---GLGRSHGERFV 287

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           Q    +   GL  V  I+ G +H  AL  DG ++ WG    GQLG G+    S   PV  
Sbjct: 288 QTPRSLSGTGLSDVVAISAGDYHVCALGRDGLVYTWGLGREGQLGHGEKADCSLAKPVDN 347

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG---DNDKSSKMVPQKVNLLAG 285
           L    +V +A GG H+ A+T DG +Y WGRG  G+LG G   ++  S +  P +V  L  
Sbjct: 348 LRNFEIVQVACGGGHTAAVTKDGVLYTWGRGRDGQLGRGGELESIASYRTSPVQVTSLPA 407

Query: 286 EDIVQVSCGGTHSVALTRD 304
             ++ V+ G  HS  L +D
Sbjct: 408 GAVLYVTLGSDHSAVLCQD 426



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD--------- 55
           + + + G+ + GQLG+G +    +V   ++L    +  VVA S     +C          
Sbjct: 263 SGLYSCGADDYGQLGLGRSHGERFVQTPRSLSGTGLSDVVAISAGDYHVCALGRDGLVYT 322

Query: 56  ----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      G+    ++   V+ L N +IVQ A GG H  AV   G  Y WG    GQ
Sbjct: 323 WGLGREGQLGHGEKADCSLAKPVDNLRNFEIVQVACGGGHTAAVTKDGVLYTWGRGRDGQ 382

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
            G   E +        R   +     P   V  V  G  HS VL ++
Sbjct: 383 LGRGGELESIAS---YRTSPVQVTSLPAGAVLYVTLGSDHSAVLCQD 426


>gi|60097906|ref|NP_080268.1| E3 ISG15--protein ligase Herc6 [Mus musculus]
 gi|403399416|sp|F2Z461.1|HERC6_MOUSE RecName: Full=E3 ISG15--protein ligase Herc6
          Length = 1003

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 153/311 (49%), Gaps = 44/311 (14%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S  +++QAA G  H L +    R Y+ G N +GQ G+   R+D +    R +   P +  
Sbjct: 20  SGIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQ---RRDQSTE--RPE---PIQAL 71

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIA 186
             L V  V+ G  HSV +  +G V+ WG         G+ K+IS +P +++ L  +K+I 
Sbjct: 72  NDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQ 131

Query: 187 V--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGW 242
           V  G +H+LAL EDG +++WG N  GQLG G    RSQ IP  V+ L G+ L  +AAGG 
Sbjct: 132 VSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNS-RSQAIPQKVKSLEGIPLAQVAAGGT 190

Query: 243 HSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           HS AL+  G  +GWG    G+L   G+  K     P  +  L    ++ +SCG  H+  L
Sbjct: 191 HSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVL 250

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG------DGVDRRWIAKLV 355
           T +G +F+FG    G+L                  P+PR+        +G+  R     +
Sbjct: 251 TEEGQVFTFGGNSSGQLQ-----------------PSPRSGQRGPQLIEGIGGR--VSQI 291

Query: 356 ACGGRHTLAIV 366
            C   HT+A V
Sbjct: 292 ECASYHTIAYV 302



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 138 QVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGLE--QVKLIAVGAF 190
           Q A+G  HS++L     V++     WGQ     D +    P  +Q L    V L++ G  
Sbjct: 26  QAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRD-QSTERPEPIQALNDLHVDLVSCGKE 84

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           H++A+   G ++AWG    GQLG G+ +  S  P  ++ L+G+ ++ ++ G +HS AL++
Sbjct: 85  HSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSE 144

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WGR   G+LG G N +S + +PQKV  L G  + QV+ GGTHS AL+  G  F 
Sbjct: 145 DGHVFSWGRNSEGQLGLGKNSRS-QAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFG 203

Query: 310 FGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G    G+L   G KV   + +  P +I A +N             ++CG  HT  + E
Sbjct: 204 WGSNRSGQLALSGNKVK--EQIYKPHSIGALKNLS--------VIYISCGYEHTAVLTE 252



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 13/204 (6%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           W  G  K   +     G+E ++  A G  H+L L  +  +++ G+N +GQLG    Q   
Sbjct: 5   WAAGSRKPRRLKAGTSGIELLQ-AASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTE 63

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P P+Q L+ L +  ++ G  HS A+   G+V+ WG G  G+LG G+  + S M P K+ 
Sbjct: 64  RPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFM-PTKIK 122

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            LAG  I+QVSCG  HS+AL+ DGH+FS+GR   G+LG G+   +         IP    
Sbjct: 123 ALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQA-------IPQKVK 175

Query: 342 AGDGVDRRWIAKLVACGGRHTLAI 365
           + +G+    +A+ VA GG H+ A+
Sbjct: 176 SLEGIP---LAQ-VAAGGTHSFAL 195



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 143/324 (44%), Gaps = 48/324 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S   + + G    GQLG   ++  E    ++AL    V  V  G  +S+A+C  GK  
Sbjct: 37  LFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVF 96

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +   +P+++ AL+  KI+Q + G +H LA+ + G  ++WG N  
Sbjct: 97  AWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSE 156

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW--- 158
           GQ G         G+  R    IPQ+      + + QVAAGGTHS  L+  G  + W   
Sbjct: 157 GQLG--------LGKNSRSQ-AIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSN 207

Query: 159 --GQPWPPGD--IKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQL 212
             GQ    G+   +QI  P  +  L+ + +I +  G  H   L E+G ++ +G N  GQL
Sbjct: 208 RSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 267

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFGDNDK 271
                  +  P  ++G+ G  +  I    +H+ A +   G+V   GRG         ++ 
Sbjct: 268 QPSPRSGQRGPQLIEGIGG-RVSQIECASYHTIAYVYTTGQVVSLGRGPS-----HTSNP 321

Query: 272 SSKMVPQK----VNLLAGEDIVQV 291
           + +  P +      LLA ED+V +
Sbjct: 322 THQEAPAENSDITCLLAAEDLVDI 345


>gi|328784403|ref|XP_395217.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis
           mellifera]
          Length = 1081

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 191/406 (47%), Gaps = 53/406 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAIC--------- 54
           +  WGS   G+LG+G  E+ E + + + L+  K   ++ +  G   ++ I          
Sbjct: 28  MFCWGSTIHGELGLGGIED-ENILIPRELDFKKAAEIQQIACGENYTVVITQIGEIYSCG 86

Query: 55  ---------DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                    + G+ + + IP     L      +AA G +H LA+++ G+ ++WG N  GQ
Sbjct: 87  NNDYGQLGHEKGRKRLQLIP----GLDAFVFKKAACGAYHTLAINEWGQLFSWGSNTEGQ 142

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----Q 160
            G   +   ++   + + +          +V Q+A G  H+  LT  G +++WG     Q
Sbjct: 143 LGLNSKNFMESSPRMVKTLGTS-------VVVQIACGMKHAFALTNNGELYSWGSNSEGQ 195

Query: 161 PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                D K    P  +       +  IA G +H++A+ + GA++ WG N +GQLG  DTQ
Sbjct: 196 LGLGTDTKYEIKPKFISAFIGIPIAFIACGGYHSIAISKSGAVFGWGKNTFGQLGLNDTQ 255

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P  +Q L    +   A G   S  LT DG V+  G G +G+LG G N  S++++P+
Sbjct: 256 DRNLPCQLQTLQNAKICYAACGEEFSVFLTVDGGVFTCGAGMYGQLGHGSN--SNEILPR 313

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG--YGRKVTTGQPMEVPIN 335
           +V  L G  + Q+SCG  H++AL    G ++++G G  G+LG    R VTT Q +  P  
Sbjct: 314 QVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNHSTRSVTTPQVVHGPWI 373

Query: 336 IPAPRNAGDGVDRR-------WIAKLVACGGRHTLAIVEWQTEESK 374
            P      D V+++       +I K +  GG H  A V  Q +  K
Sbjct: 374 APNGSTIMD-VNKQFNSRTIGYIVKHIFTGGDHCFATVISQNDIVK 418



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 18/124 (14%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           L    +++ WG   HG LG G  +  + ++P++++     +I Q++CG  ++V +T+ G 
Sbjct: 22  LHKKKDMFCWGSTIHGELGLGGIEDENILIPRELDFKKAAEIQQIACGENYTVVITQIGE 81

Query: 307 IFSFGRGDHGRLGY--GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           I+S G  D+G+LG+  GRK     P               G+D  ++ K  ACG  HTLA
Sbjct: 82  IYSCGNNDYGQLGHEKGRKRLQLIP---------------GLD-AFVFKKAACGAYHTLA 125

Query: 365 IVEW 368
           I EW
Sbjct: 126 INEW 129



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 17/138 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + ++R   C ++ L+  K+     G   S+ +  DG   
Sbjct: 232 ISKSGAVFGWGKNTFGQLGLNDTQDRNLPCQLQTLQNAKICYAACGEEFSVFLTVDGGVF 291

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P QV  L  + + Q + G  H LA V  +GR YAWG    
Sbjct: 292 TCGAGMYGQLGHGSNSNEILPRQVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGA 351

Query: 104 GQCGEEPERKDDTGRILR 121
           GQ G    R   T +++ 
Sbjct: 352 GQLGNHSTRSVTTPQVVH 369


>gi|47214126|emb|CAG01384.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 4628

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 187/410 (45%), Gaps = 68/410 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3758 TIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 3817

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G
Sbjct: 3818 AGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 3877

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R++             + V  +AAGG HS  +T  G ++TWG+       
Sbjct: 3878 HGNRSPCDRPRVIES--------LRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLG 3929

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +    P  V  L+  ++I V    G    L L +D  +W+WG+ +YG+LG G +  
Sbjct: 3930 HGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGDYGKLGRGGSDG 3989

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L+GL ++ +  G   S ALT  G VY WG+G++ RLG G +D   +  P++
Sbjct: 3990 CKTPMKIDSLTGLGVIKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 4047

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHI-----------------FSFGRGDHGRLGYGR 322
            V  L G+ ++ ++ G  H V  T DG I                 +++G  D G+LG G 
Sbjct: 4048 VQGLQGKKVIAIATGSLHCVCCTEDGRIKVFQWGLPRWSLGLGEVYTWGDNDEGQLGDG- 4106

Query: 323  KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
               T   ++ P  + A +  G  ++R      VACG  HTL+   W T +
Sbjct: 4107 ---TTNAIQRPRLVAALQ--GKKINR------VACGSAHTLS---WSTSK 4142



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 182/387 (47%), Gaps = 49/387 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 2730 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYACGE 2789

Query: 59   -----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                       + T  IP Q+ ALSN  + + A+  GG H +A+   G+ ++WG  + G+
Sbjct: 2790 ATNGRLGLGLSSGTIPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGK 2849

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
             G       D  R++  + +  +R      +R +A G +HS  +T  G +++WG      
Sbjct: 2850 LGHFSRMNCDKPRLI--EALKAKR------IRDIACGSSHSAAITSSGELYSWGLGEYGR 2901

Query: 162  WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 2902 LGHGDNTTQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 2961

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            +  + P  ++ L+G  +  I  G   S ALT  G V+ WG+G++ RLG G +    K  P
Sbjct: 2962 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRK--P 3019

Query: 278  QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            Q V  L G+ IV V+ G  H +A+T  G ++++G  DHG+ G G      +P  V     
Sbjct: 3020 QMVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTTTVNRKPTLV----- 3074

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLA 364
                   G++ + I + VACG  H++A
Sbjct: 3075 ------QGLEGQKITR-VACGSSHSVA 3094



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 167/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G +   
Sbjct: 2752 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKIYA--------CGEATNGRLGLG-LSSG 2802

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             I IP++       +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 2803 TIPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 2862

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L++WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2863 LIEALKAKRIRDIACGSSHSAAITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGH 2922

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 2923 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 2980

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2981 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQMV-----------EGLRGKK 3029

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3030 IVH-VAVGALHCLAVTD 3045



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 154/300 (51%), Gaps = 26/300 (8%)

Query: 33  KALEPYKVRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGW 84
           K+L    V  +V   +  L +   G   T+N       P  +++LS+ K+V+ A    G 
Sbjct: 409 KSLSSLGVTQIVCSEKGFLILSSSGAVYTQNYKSTTLAPMLIHSLSSRKMVKLAAHPDGQ 468

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV--IPQRCAPKLIVRQVAAG 142
           H LA+   G  ++WG  + G+ G       DT  +    ++     + A K +V  +A G
Sbjct: 469 HYLALSSNGEVFSWGCGDGGRLGH-----GDTTYLEEPTMIAAFNGKQAGKHVV-HIACG 522

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLA 194
            T+S  +T +G ++TWG+        G  +  + P+ V  L+ +K++ V    G    LA
Sbjct: 523 STYSAAITVDGELYTWGRGNYGRLGHGSSEDQTTPMLVTALKGLKVVDVACGSGDAQTLA 582

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + E+G +W+WG+ +YG+LG G +     P  V+ L  L +V +  G   S ALT DG+VY
Sbjct: 583 VTENGQVWSWGDGDYGKLGRGGSDGCKTPKLVEKLQDLDIVKVCCGSQFSVALTKDGQVY 642

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+G++ RLG G ++      P+ ++ L G+ +V V+ G TH +ALT DG + S+G  D
Sbjct: 643 TWGKGDNQRLGHGTDEHVR--FPKLLDTLQGKKVVDVAVGSTHCLALTDDGEVHSWGSND 700



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 158/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            I A G   +G+LG+G +       R+    + AL  Y V+ V   +G R+++A+  DGK 
Sbjct: 2784 IYACGEATNGRLGLGLSSGTIPIPRQ----ITALSNYVVKKVAVHSGGRHAMALTVDGKV 2839

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y+WG  EY
Sbjct: 2840 FSWGEGDDGKLGHFSRMNCDKPRLIEALKAKRIRDIACGSSHSAAITSSGELYSWGLGEY 2899

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PKL+       V QVA G     ++ LT EG 
Sbjct: 2900 GRLGH----GDNTTQL-----------RPKLVKVLLGHRVIQVACGSRDAQTLALTDEGL 2944

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 2945 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3000

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3001 GKGDYFRLGHGTDVHVRKPQMVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3060

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3061 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3096



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 116/210 (55%), Gaps = 14/210 (6%)

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           ++I    + K++       G H + L+  G V++WG         GD   +  P  +   
Sbjct: 448 MLIHSLSSRKMVKLAAHPDGQHYLALSSNGEVFSWGCGDGGRLGHGDTTYLEEPTMIAAF 507

Query: 180 ------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
                 + V  IA G+ ++ A+  DG L+ WG   YG+LG G ++ ++ P+ V  L GL 
Sbjct: 508 NGKQAGKHVVHIACGSTYSAAITVDGELYTWGRGNYGRLGHGSSEDQTTPMLVTALKGLK 567

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +VD+A G     + A+T++G+V+ WG G++G+LG G +D      P+ V  L   DIV+V
Sbjct: 568 VVDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLVEKLQDLDIVKV 625

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            CG   SVALT+DG ++++G+GD+ RLG+G
Sbjct: 626 CCGSQFSVALTKDGQVYTWGKGDNQRLGHG 655



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 39/288 (13%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
            + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 2731 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 2780

Query: 152  EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            EG ++  G+    G +        I +P ++  L    VK +AV  G  H +AL  DG +
Sbjct: 2781 EGKIYACGEA-TNGRLGLGLSSGTIPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKV 2839

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  + G+LG        +P  ++ L    + DIA G  HS A+T  GE+Y WG GE+
Sbjct: 2840 FSWGEGDDGKLGHFSRMNCDKPRLIEALKAKRIRDIACGSSHSAAITSSGELYSWGLGEY 2899

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 2900 GRLGHGDN--TTQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 2957

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 2958 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 2993



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           ++S   + +WG G+ G+LG G+    E   ++ A    +    V  +  GS  S AI  D
Sbjct: 473 LSSNGEVFSWGCGDGGRLGHGDTTYLEEPTMIAAFNGKQAGKHVVHIACGSTYSAAITVD 532

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                +  P  V AL   K+V  A G      LAV + G+ ++W
Sbjct: 533 GELYTWGRGNYGRLGHGSSEDQTTPMLVTALKGLKVVDVACGSGDAQTLAVTENGQVWSW 592

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L + +V  G   SV LT++G V+TW
Sbjct: 593 GDGDYGKLGRGGSDGCKTPKLVEK--------LQDLDIVKVCCGSQFSVALTKDGQVYTW 644

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  +  L+  K+  +AVG+ H LAL +DG + +WG+N+  Q 
Sbjct: 645 GKGDNQRLGHGTDEHVRFPKLLDTLQGKKVVDVAVGSTHCLALTDDGEVHSWGSNDKLQH 704

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + QP  + GL+   +V I+ G   S A
Sbjct: 705 FDTLFSNKKQPKALPGLNSKHIVGISCGPGQSFA 738



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 4/114 (3%)

Query: 223 PIPVQGLSGLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDND--KSSKMVPQ 278
           P+ +  LS   +V +AA   G H  AL+ +GEV+ WG G+ GRLG GD    +   M+  
Sbjct: 447 PMLIHSLSSRKMVKLAAHPDGQHYLALSSNGEVFSWGCGDGGRLGHGDTTYLEEPTMIAA 506

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                AG+ +V ++CG T+S A+T DG ++++GRG++GRLG+G       PM V
Sbjct: 507 FNGKQAGKHVVHIACGSTYSAAITVDGELYTWGRGNYGRLGHGSSEDQTTPMLV 560



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 124/295 (42%), Gaps = 65/295 (22%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   V+++L   +V  + AG  +S  I   G+  
Sbjct: 3859 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGVEVVDIAAGGAHSACITASGELF 3918

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V+AL   +++  A G      L + D    ++WG  +
Sbjct: 3919 TWGKGRYGRLGHGDSEDQLKPKLVDALQGHRVIDVACGSGDAQTLCLTDDDMVWSWGDGD 3978

Query: 103  YGQCG-------EEPERKDD-TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            YG+ G       + P + D  TG                L V +V  G   SV LT+ G 
Sbjct: 3979 YGKLGRGGSDGCKTPMKIDSLTG----------------LGVIKVECGSQFSVALTKSGA 4022

Query: 155  VWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGAL------- 201
            V+TWG+        G    +  P +VQGL+  K+IA+  G+ H +   EDG +       
Sbjct: 4023 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGRIKVFQWGL 4082

Query: 202  ----------WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                      + WG+N+ GQLG G T    +P  V  L G  +  +A G  H+ +
Sbjct: 4083 PRWSLGLGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKINRVACGSAHTLS 4137



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + L+ L                          
Sbjct: 3757 GTIYGWGHNHRGQLGGIEGAKVKVPTPTEALATLRPVQLIGGEQTLFAVTADGKLYATGY 3816

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ +GEVY WG  E G+L
Sbjct: 3817 GAGGRLGIGGTESVSTPTLLESIQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 3876

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G+     +  P+ +  L G ++V ++ GG HS  +T  G +F++G+G +GRLG+G
Sbjct: 3877 GHGNRSPCDR--PRVIESLRGVEVVDIAAGGAHSACITASGELFTWGKGRYGRLGHG 3931



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  + +WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2885 ITSSGELYSWGLGEYGRLGHGDNTTQLRPKLVKVLLGHRVIQVACGSRDAQTLALTDEGL 2944

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2945 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3004

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  ++      K++   VA G  H + +T  G V+ WG   
Sbjct: 3005 YFRLGH------GTDVHVRKPQMVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3056

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3057 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3094


>gi|74204005|dbj|BAE29004.1| unnamed protein product [Mus musculus]
          Length = 926

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 153/311 (49%), Gaps = 44/311 (14%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S  +++QAA G  H L +    R Y+ G N +GQ G+   R+D +    R +   P +  
Sbjct: 20  SGIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQ---RRDQSTE--RPE---PIQAL 71

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIA 186
             L V  V+ G  HSV +  +G V+ WG         G+ K+IS +P +++ L  +K+I 
Sbjct: 72  NDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQ 131

Query: 187 V--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGW 242
           V  G +H+LAL EDG +++WG N  GQLG G    RSQ IP  V+ L G+ L  +AAGG 
Sbjct: 132 VSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNS-RSQAIPQKVKSLEGIPLAQVAAGGT 190

Query: 243 HSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           HS AL+  G  +GWG    G+L   G+  K     P  +  L    ++ +SCG  H+  L
Sbjct: 191 HSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVL 250

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG------DGVDRRWIAKLV 355
           T +G +F+FG    G+L                  P+PR+        +G+  R     +
Sbjct: 251 TEEGQVFTFGGNSSGQLQ-----------------PSPRSGQRGPQLIEGIGGR--VSQI 291

Query: 356 ACGGRHTLAIV 366
            C   HT+A V
Sbjct: 292 ECASYHTIAYV 302



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 138 QVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGLE--QVKLIAVGAF 190
           Q A+G  HS++L     V++     WGQ     D +    P  +Q L    V L++ G  
Sbjct: 26  QAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRD-QSTERPEPIQALNDLHVDLVSCGKE 84

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           H++A+   G ++AWG    GQLG G+ +  S  P  ++ L+G+ ++ ++ G +HS AL++
Sbjct: 85  HSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSE 144

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WGR   G+LG G N +S + +PQKV  L G  + QV+ GGTHS AL+  G  F 
Sbjct: 145 DGHVFSWGRNSEGQLGLGKNSRS-QAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFG 203

Query: 310 FGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G    G+L   G KV   + +  P +I A +N             ++CG  HT  + E
Sbjct: 204 WGSNRSGQLALSGNKVK--EQIYKPHSIGALKNLS--------VIYISCGYEHTAVLTE 252



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 13/204 (6%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           W  G  K   +     G+E ++  A G  H+L L  +  +++ G+N +GQLG    Q   
Sbjct: 5   WAAGSRKPRRLKAGTSGIELLQ-AASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTE 63

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P P+Q L+ L +  ++ G  HS A+   G+V+ WG G  G+LG G+  + S M P K+ 
Sbjct: 64  RPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFM-PTKIK 122

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            LAG  I+QVSCG  HS+AL+ DGH+FS+GR   G+LG G+   +         IP    
Sbjct: 123 ALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQA-------IPQKVK 175

Query: 342 AGDGVDRRWIAKLVACGGRHTLAI 365
           + +G+    +A+ VA GG H+ A+
Sbjct: 176 SLEGIP---LAQ-VAAGGTHSFAL 195



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 143/324 (44%), Gaps = 48/324 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S   + + G    GQLG   ++  E    ++AL    V  V  G  +S+A+C  GK  
Sbjct: 37  LFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVF 96

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +   +P+++ AL+  KI+Q + G +H LA+ + G  ++WG N  
Sbjct: 97  AWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSE 156

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW--- 158
           GQ G         G+  R    IPQ+      + + QVAAGGTHS  L+  G  + W   
Sbjct: 157 GQLG--------LGKNSRSQ-AIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSN 207

Query: 159 --GQPWPPGD--IKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQL 212
             GQ    G+   +QI  P  +  L+ + +I +  G  H   L E+G ++ +G N  GQL
Sbjct: 208 RSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 267

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFGDNDK 271
                  +  P  ++G+ G  +  I    +H+ A +   G+V   GRG         ++ 
Sbjct: 268 QPSPRSGQRGPQLIEGIGG-RVSQIECASYHTIAYVYTTGQVVSLGRGPS-----HTSNP 321

Query: 272 SSKMVPQK----VNLLAGEDIVQV 291
           + +  P +      LLA ED+V +
Sbjct: 322 THQEAPAENSDITCLLAAEDLVDI 345


>gi|355694504|gb|AER99691.1| hect domain and RLD 6 [Mustela putorius furo]
          Length = 1014

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 154/305 (50%), Gaps = 37/305 (12%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
           ++ QAA G  H L +   G  +++G N +GQ G  + +R++   RI   +          
Sbjct: 24  ELRQAASGERHSLLLLSNGELHSYGDNSHGQLGRRDVQRQEQPKRIPALET--------- 74

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIAV- 187
           L V  V+ G  HS+ +  +G V+ WG         G+  +I+ +P +++ L  +K+I V 
Sbjct: 75  LRVDLVSCGKEHSLAVCYKGRVFAWGAGSEGQLGIGEFNEINLIPRKIKTLTDIKIIQVS 134

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHST 245
            G  H+LAL EDG L+ WG+N +GQLG G   P ++ P  VQ L G+ L  +AAGG HS 
Sbjct: 135 CGHHHSLALSEDGRLFTWGSNSHGQLGLGKECPSQASPQRVQFLDGIPLTQVAAGGAHSF 194

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDND----KSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           AL+  G  +GWG    G+L     +    +SSK  P  V+ L    +V +SCG  H+  L
Sbjct: 195 ALSLSGASFGWGSNSEGQLALRKKNVPVVQSSK--PCSVDALENLGVVYISCGYEHTAVL 252

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           T+ G +F+FG   +G+LGY        P  V           +G+D   +   + CG  H
Sbjct: 253 TQTGKVFTFGGNSYGQLGYSPTAGKEGPQLV-----------EGID--GLVSQIDCGSYH 299

Query: 362 TLAIV 366
           TLA V
Sbjct: 300 TLAYV 304



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 16/239 (6%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGA 189
           +RQ A+G  HS++L   G + ++G          D+++   P R+  LE  +V L++ G 
Sbjct: 25  LRQAASGERHSLLLLSNGELHSYGDNSHGQLGRRDVQRQEQPKRIPALETLRVDLVSCGK 84

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            H+LA+   G ++AWG    GQLG G+  +    P  ++ L+ + ++ ++ G  HS AL+
Sbjct: 85  EHSLAVCYKGRVFAWGAGSEGQLGIGEFNEINLIPRKIKTLTDIKIIQVSCGHHHSLALS 144

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           +DG ++ WG   HG+LG G  +  S+  PQ+V  L G  + QV+ GG HS AL+  G  F
Sbjct: 145 EDGRLFTWGSNSHGQLGLG-KECPSQASPQRVQFLDGIPLTQVAAGGAHSFALSLSGASF 203

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +G    G+L   +K         P ++ A  N G           ++CG  HT  + +
Sbjct: 204 GWGSNSEGQLALRKKNVPVVQSSKPCSVDALENLG--------VVYISCGYEHTAVLTQ 254



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 163/396 (41%), Gaps = 86/396 (21%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S   + ++G    GQLG  + + +E    + ALE  +V  V  G  +SLA+C  G+  
Sbjct: 38  LLSNGELHSYGDNSHGQLGRRDVQRQEQPKRIPALETLRVDLVSCGKEHSLAVCYKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +   IP ++  L++ KI+Q + G  H LA+ + GR + WG N +
Sbjct: 98  AWGAGSEGQLGIGEFNEINLIPRKIKTLTDIKIIQVSCGHHHSLALSEDGRLFTWGSNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------CPSQASPQRVQFLDGIPLTQVAAGGAHSFALSLSGASF 203

Query: 157 TWGQP--------WPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGN 206
            WG               + Q S P  V  LE   V  I+ G  H   L + G ++ +G 
Sbjct: 204 GWGSNSEGQLALRKKNVPVVQSSKPCSVDALENLGVVYISCGYEHTAVLTQTGKVFTFGG 263

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLG 265
           N YGQLG   T  +  P  V+G+ GL +  I  G +H+ A +   G+V  +GRG      
Sbjct: 264 NSYGQLGYSPTAGKEGPQLVEGIDGL-VSQIDCGSYHTLAYVYTTGKVVSFGRGPCC--- 319

Query: 266 FGDNDKSSKMVPQK-----VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
                KSS   P+        L++ +D+V                HIF+   G H     
Sbjct: 320 -----KSSPTHPEAPTENFTCLISADDLVDFEV-----------KHIFA---GTHANF-- 358

Query: 321 GRKVTTGQ---PMEVPINI-PAPRNAGDGVDRRWIA 352
              VTT Q     +VP  I P  R     +  +WIA
Sbjct: 359 ---VTTCQDTSSTDVPRKILPEIRQISQSLTEKWIA 391



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           G  G  L   A+G  HS  L  +GE++ +G   HG+LG  D  +  +  P+++  L    
Sbjct: 19  GRGGAELRQAASGERHSLLLLSNGELHSYGDNSHGQLGRRDVQRQEQ--PKRIPALETLR 76

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +  VSCG  HS+A+   G +F++G G  G+LG G            IN+  PR      D
Sbjct: 77  VDLVSCGKEHSLAVCYKGRVFAWGAGSEGQLGIGEFNE--------INL-IPRKIKTLTD 127

Query: 348 RRWIAKLVACGGRHTLAIVE 367
            + I   V+CG  H+LA+ E
Sbjct: 128 IKIIQ--VSCGHHHSLALSE 145


>gi|383455292|ref|YP_005369281.1| hypothetical protein COCOR_03305 [Corallococcus coralloides DSM
           2259]
 gi|380729146|gb|AFE05148.1| hypothetical protein COCOR_03305 [Corallococcus coralloides DSM
           2259]
          Length = 744

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 179/380 (47%), Gaps = 58/380 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           ++ AWG  +DGQLG G    R     V+ L    V +V  G+ +SLA+C           
Sbjct: 114 TVWAWGRNDDGQLGDGTLSTRGDPVQVQGLS--GVTTVALGATHSLALCYDGSVWAWGAN 171

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG +     P  V  L   ++V  A G  H LAV   G  +AWG N  GQ G+ 
Sbjct: 172 DHGQLGDGTSIARRTPQMVAGLQ--EVVAVAAGANHSLAVLSDGTVWAWGENYDGQLGD- 228

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                  G  + R + +P +    ++   VA+G +HS+ L  +G+VW WG  +      G
Sbjct: 229 -------GTTVTRRVPVPIQGLSGIVA--VASGTSHSLALRYDGNVWAWGSNYSGQLGDG 279

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                S PV+V  L  +  +  G  +++A++ DG +W WG N YGQLG G T  RS P+ 
Sbjct: 280 SSLSRSSPVQVTELSGIVSVEGGPDYSMAVRYDGTVWTWGINTYGQLGDGTTIARSVPVQ 339

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
             GLSG  +V +AAG  H+ A+  +  ++ WG   +G+   GD  +S    P+ +     
Sbjct: 340 TSGLSG--VVAVAAGRTHALAMRANNSIWAWGGNVNGQ--RGDESRSVYFSPRTIL---- 391

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
            ++V ++    HS+A+  DG ++++G  + G+LG G       P EV  N+ +       
Sbjct: 392 NEVVTMAATNDHSLAVRSDGGLWAWGANNEGQLGDGTTKNRWAPAEVLGNVVS------- 444

Query: 346 VDRRWIAKLVACGGRHTLAI 365
                    VA G RH+LA+
Sbjct: 445 ---------VAAGRRHSLAV 455



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 154/307 (50%), Gaps = 35/307 (11%)

Query: 43  VVAGSRNSLAICDDGKTKT-------------ENIPSQVNALSNTKIVQAAIGGWHCLAV 89
           + A S NSLAI  DG   T             ++ P Q+  LS   +V    G    +AV
Sbjct: 52  IAASSMNSLAIRSDGTVWTVGTRYVSANGWYRQDWPGQLPGLSG--MVSIDSGDDFSMAV 109

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
              G  +AWG N+ GQ G+            R D V  Q  +    V  VA G THS+ L
Sbjct: 110 RSDGTVWAWGRNDDGQLGDGTLST-------RGDPVQVQGLSG---VTTVALGATHSLAL 159

Query: 150 TREGHVWTWG--QPWPPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
             +G VW WG       GD   I+   P  V GL++V  +A GA H+LA+  DG +WAWG
Sbjct: 160 CYDGSVWAWGANDHGQLGDGTSIARRTPQMVAGLQEVVAVAAGANHSLAVLSDGTVWAWG 219

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            N  GQLG G T  R  P+P+QGLSG  +V +A+G  HS AL  DG V+ WG    G+L 
Sbjct: 220 ENYDGQLGDGTTVTRRVPVPIQGLSG--IVAVASGTSHSLALRYDGNVWAWGSNYSGQL- 276

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            GD    S+  P +V  L+G  IV V  G  +S+A+  DG ++++G   +G+LG G  + 
Sbjct: 277 -GDGSSLSRSSPVQVTELSG--IVSVEGGPDYSMAVRYDGTVWTWGINTYGQLGDGTTIA 333

Query: 326 TGQPMEV 332
              P++ 
Sbjct: 334 RSVPVQT 340



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 163/355 (45%), Gaps = 54/355 (15%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           AWG+  +GQLG G  + R W     A     V SV AG R+SLA+ DDG           
Sbjct: 415 AWGANNEGQLGDGTTKNR-WA---PAEVLGNVVSVAAGRRHSLAVRDDGSLWAWGSNTVG 470

Query: 60  -------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                   +  IP QV  +S   I   A G  + +A+      +AWG N YGQ G+    
Sbjct: 471 QLGDGTGSSRTIPMQVPGISG--IASVAAGSDYSVALRYDRTLWAWGENSYGQLGD---- 524

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQI 170
               G  + R +  P R      +  +A G  H + +   G VW WG       GD   I
Sbjct: 525 ----GTTVNRHV--PTRVQGLSGIVAIATGNGHMLAVRSNGTVWAWGDNSSGQLGDGTTI 578

Query: 171 --SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             + PV+VQ L  +  +A GA H+LA++ DG LWAWG N   QLG G   PR  P  VQG
Sbjct: 579 NRATPVQVQVLSGIVAVAAGAAHSLAVRYDGTLWAWGINNTSQLGDGTGIPRLVPTQVQG 638

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED- 287
           +   + V ++A   HS A+  DG ++ WG   +G+LG   N  ++   P KV  L G   
Sbjct: 639 IG--SAVAVSAAKHHSLAVLADGTLWDWGANNYGQLG--RNQDNTNPTPSKVTTLTGVTE 694

Query: 288 ---IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
                  S G  HS+AL  DG++  +G   +G+LG G          VP NIP P
Sbjct: 695 AVGTFGYSIGFGHSLALRSDGYLVGWGHNTYGQLGTG----------VPENIPVP 739



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 164/352 (46%), Gaps = 44/352 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           M +  SI AWG   +GQ G    +E   V         +V ++ A + +SLA+       
Sbjct: 359 MRANNSIWAWGGNVNGQRG----DESRSVYFSPRTILNEVVTMAATNDHSLAVRSDGGLW 414

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG TK    P++V  L N  +V  A G  H LAV D G  +AWG N  G
Sbjct: 415 AWGANNEGQLGDGTTKNRWAPAEV--LGN--VVSVAAGRRHSLAVRDDGSLWAWGSNTVG 470

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G      D TG        IP +      +  VAAG  +SV L  +  +W WG+    
Sbjct: 471 QLG------DGTGS----SRTIPMQVPGISGIASVAAGSDYSVALRYDRTLWAWGENSYG 520

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G      VP RVQGL  +  IA G  H LA++ +G +WAWG+N  GQLG G T  R
Sbjct: 521 QLGDGTTVNRHVPTRVQGLSGIVAIATGNGHMLAVRSNGTVWAWGDNSSGQLGDGTTINR 580

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ VQ LSG+  V   A   HS A+  DG ++ WG     +L  GD     ++VP +V
Sbjct: 581 ATPVQVQVLSGIVAVAAGAA--HSLAVRYDGTLWAWGINNTSQL--GDGTGIPRLVPTQV 636

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +     V VS    HS+A+  DG ++ +G  ++G+LG  +  T   P +V
Sbjct: 637 QGIG--SAVAVSAAKHHSLAVLADGTLWDWGANNYGQLGRNQDNTNPTPSKV 686



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 21/229 (9%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGD-IKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           ++AA   +S+ +  +G VWT G  +   +   +   P ++ GL  +  I  G   ++A++
Sbjct: 51  RIAASSMNSLAIRSDGTVWTVGTRYVSANGWYRQDWPGQLPGLSGMVSIDSGDDFSMAVR 110

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            DG +WAWG N+ GQLG G    R  P+ VQGLSG+T V  A G  HS AL  DG V+ W
Sbjct: 111 SDGTVWAWGRNDDGQLGDGTLSTRGDPVQVQGLSGVTTV--ALGATHSLALCYDGSVWAW 168

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G  +HG+L  GD    ++  PQ V  L  +++V V+ G  HS+A+  DG ++++G    G
Sbjct: 169 GANDHGQL--GDGTSIARRTPQMVAGL--QEVVAVAAGANHSLAVLSDGTVWAWGENYDG 224

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +LG G  VT          +P P     G+        VA G  H+LA+
Sbjct: 225 QLGDGTTVTR--------RVPVPIQGLSGI------VAVASGTSHSLAL 259



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 126/284 (44%), Gaps = 34/284 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEER---------EWVCVVKALEPYKV-----RSVVAGSRNSL 51
           S+ AWGS   GQLG G    R           +  V A   Y V     R++ A   NS 
Sbjct: 460 SLWAWGSNTVGQLGDGTGSSRTIPMQVPGISGIASVAAGSDYSVALRYDRTLWAWGENSY 519

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T   ++P++V  LS   IV  A G  H LAV   G  +AWG N  GQ G+   
Sbjct: 520 GQLGDGTTVNRHVPTRVQGLSG--IVAIATGNGHMLAVRSNGTVWAWGDNSSGQLGD--- 574

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQ 169
                G  + R    P +      +  VAAG  HS+ +  +G +W WG       GD   
Sbjct: 575 -----GTTINR--ATPVQVQVLSGIVAVAAGAAHSLAVRYDGTLWAWGINNTSQLGDGTG 627

Query: 170 IS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           I   VP +VQG+     ++    H+LA+  DG LW WG N YGQLG         P  V 
Sbjct: 628 IPRLVPTQVQGIGSAVAVSAAKHHSLAVLADGTLWDWGANNYGQLGRNQDNTNPTPSKVT 687

Query: 228 GLSGLT----LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
            L+G+T        + G  HS AL  DG + GWG   +G+LG G
Sbjct: 688 TLTGVTEAVGTFGYSIGFGHSLALRSDGYLVGWGHNTYGQLGTG 731



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 218 QPRSQPIPVQGLSGLTLVD------IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           QP SQ  P Q     TL        IAA   +S A+  DG V+  G       G+   D 
Sbjct: 28  QPSSQ-TPAQAAREFTLQSAQARDRIAASSMNSLAIRSDGTVWTVGTRYVSANGWYRQDW 86

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
                P ++  L+G  +V +  G   S+A+  DG ++++GR D G+LG G   T G P++
Sbjct: 87  -----PGQLPGLSG--MVSIDSGDDFSMAVRSDGTVWAWGRNDDGQLGDGTLSTRGDPVQ 139

Query: 332 V 332
           V
Sbjct: 140 V 140


>gi|145547042|ref|XP_001459203.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427027|emb|CAK91806.1| unnamed protein product [Paramecium tetraurelia]
          Length = 560

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 185/406 (45%), Gaps = 71/406 (17%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           T + AWG  +DG+L IGN ++      V+ L+   V+ + +GS +S  +  DG+      
Sbjct: 15  TYLFAWGRNKDGELSIGNQKKCNAPKAVQGLKNQTVQLISSGSNHSGIVTQDGQLFICGS 74

Query: 60  --------KTENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                   +  N PS      V A+    + Q A G +H L + D G+ YAWGG  + + 
Sbjct: 75  ALHGKLGFEDANQPSYPKFLLVQAMKGLFVTQVATGDYHTLCLLDNGQVYAWGGTLHKKL 134

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG------- 159
           G +       G+  R + +       K  + Q+  G  HS  L+  G ++TWG       
Sbjct: 135 GSK------AGKPARIETL-------KQTIVQIGCGDFHSAALSANGDLYTWGGGGRDYN 181

Query: 160 -QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                 G +  +  P  V+  + +   + G +H +AL +DG LW+WG+  YG+ G G+ Q
Sbjct: 182 RGQLGHGHLNDVETPQIVK--DNIVKFSCGGYHMMALDKDGELWSWGSGMYGETGQGEFQ 239

Query: 219 PRSQP----------------IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
               P                I VQ     T+ +I+ GG HS  L++ G VY  G  +HG
Sbjct: 240 DSLLPKKVKINFNQKHIIIDDIFVQNKQESTIKEISLGGHHSLLLSNKGIVYACGYAQHG 299

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           +LG    +  +K   Q V  ++G+ IVQ++ G  HS+ LT    +++ G    G+LG G 
Sbjct: 300 QLGIKATENQNKF--QLVIGISGKTIVQIAAGWNHSIVLTSHSDVYTCGHNQAGQLGVGD 357

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             +  Q   +           + +++R I +L A GG H+ A++++
Sbjct: 358 YESRTQYTRI-----------NFLEQRRIKQLFA-GGNHSWALIDY 391



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 39/298 (13%)

Query: 87  LAVDDQGRAY--AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
            A DDQ   Y  AWG N+ G+     ++K +  + ++              V+ +++G  
Sbjct: 7   FAGDDQQITYLFAWGRNKDGELSIGNQKKCNAPKAVQ--------GLKNQTVQLISSGSN 58

Query: 145 HSVVLTREGHVWTWGQPWPPG----DIKQISVP--VRVQGLE--QVKLIAVGAFHNLALQ 196
           HS ++T++G ++  G          D  Q S P  + VQ ++   V  +A G +H L L 
Sbjct: 59  HSGIVTQDGQLFICGSALHGKLGFEDANQPSYPKFLLVQAMKGLFVTQVATGDYHTLCLL 118

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           ++G ++AWG   + +LG+       +P  ++ L   T+V I  G +HS AL+ +G++Y W
Sbjct: 119 DNGQVYAWGGTLHKKLGS----KAGKPARIETLKQ-TIVQIGCGDFHSAALSANGDLYTW 173

Query: 257 GRG----EHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           G G      G+LG G  ND  +   PQ V     ++IV+ SCGG H +AL +DG ++S+G
Sbjct: 174 GGGGRDYNRGQLGHGHLNDVET---PQIVK----DNIVKFSCGGYHMMALDKDGELWSWG 226

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV----DRRWIAKLVACGGRHTLAI 365
            G +G  G G    +  P +V IN        D +     +    K ++ GG H+L +
Sbjct: 227 SGMYGETGQGEFQDSLLPKKVKINFNQKHIIIDDIFVQNKQESTIKEISLGGHHSLLL 284


>gi|145593730|ref|YP_001158027.1| cell wall anchor domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303067|gb|ABP53649.1| LPXTG-motif cell wall anchor domain [Salinispora tropica CNB-440]
          Length = 558

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 173/389 (44%), Gaps = 47/389 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +I+AWG  + GQLG G   +      V+      V +V AG R+S+A+            
Sbjct: 55  AILAWGGNDGGQLGDGTTTDSSEPIAVRLPTGTTVAAVAAGDRHSVALTSAGTVLAWGRN 114

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 +G T +   P  V+  S  +IV  A+G  H LA+   G   AWG N+ GQ G+ 
Sbjct: 115 TEGQLGNGTTTSSGEPVAVSLPSGIRIVAVAVGADHSLALTSTGSLLAWGSNDTGQLGD- 173

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG--HVWTWG--QPWPPG 165
                  G +      +  R  P   V  +AAG  H++VLT  G   +  WG  +    G
Sbjct: 174 -------GSVTSSSTPVAVRLPPNTTVAAIAAGRDHNLVLTATGPAALLAWGANREGQLG 226

Query: 166 DIKQIS----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           D   +     VPV +     V  IA G  H+LAL  D  + AWG N +GQLG G T    
Sbjct: 227 DGTVVDRSRPVPVNLPTGLTVTAIAGGRDHSLALTSDDTVLAWGGNSHGQLGDGTTTGSL 286

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ V    G     IAAG  HS ALT DG    WG    G+LG G    SS+  P  V+
Sbjct: 287 LPVTVVLPVGAEATAIAAGRLHSLALTSDGTALAWGGNHWGQLGNGSTSDSSE--PVAVS 344

Query: 282 LLAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           L  G  ++ ++   + H+VA+T +G   ++G    G LG G    +  P  V +++P   
Sbjct: 345 LPGGTRLISIASRDSDHNVAITTEGAALAWGLNSQGHLGDGTTTDSATP--VAVSLP--- 399

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
            AG  +        +A G  H+LA+   Q
Sbjct: 400 -AGAALTS------IAVGDDHSLALPAQQ 421



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 140/328 (42%), Gaps = 39/328 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  +++AWG   +GQLG G          V      ++ +V  G+ +SLA+       
Sbjct: 102 LTSAGTVLAWGRNTEGQLGNGTTTSSGEPVAVSLPSGIRIVAVAVGADHSLALTSTGSLL 161

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA--YAWGGNE 102
                      DG   + + P  V    NT +   A G  H L +   G A   AWG N 
Sbjct: 162 AWGSNDTGQLGDGSVTSSSTPVAVRLPPNTTVAAIAAGRDHNLVLTATGPAALLAWGANR 221

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW---- 158
            GQ G+        G ++ R   +P      L V  +A G  HS+ LT +  V  W    
Sbjct: 222 EGQLGD--------GTVVDRSRPVPVNLPTGLTVTAIAGGRDHSLALTSDDTVLAWGGNS 273

Query: 159 ----GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
               G     G +  ++V + V    +   IA G  H+LAL  DG   AWG N +GQLG 
Sbjct: 274 HGQLGDGTTTGSLLPVTVVLPVG--AEATAIAAGRLHSLALTSDGTALAWGGNHWGQLGN 331

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAA-GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           G T   S+P+ V    G  L+ IA+    H+ A+T +G    WG    G LG G    S+
Sbjct: 332 GSTSDSSEPVAVSLPGGTRLISIASRDSDHNVAITTEGAALAWGLNSQGHLGDGTTTDSA 391

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
              P  V+L AG  +  ++ G  HS+AL
Sbjct: 392 T--PVAVSLPAGAALTSIAVGDDHSLAL 417


>gi|291296242|ref|YP_003507640.1| chromosome condensation regulator RCC1 [Meiothermus ruber DSM 1279]
 gi|290471201|gb|ADD28620.1| regulator of chromosome condensation RCC1 [Meiothermus ruber DSM
           1279]
          Length = 593

 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 162/320 (50%), Gaps = 36/320 (11%)

Query: 58  KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
            + +++ P+Q + +++   V  ++G +H +A+ + GR    G ++YGQ G+ P     T 
Sbjct: 258 TSPSDSTPTQASLINDA--VSISLGEYHAIALTNDGRVVTLGRDDYGQLGDGPGDSSGTH 315

Query: 118 RILR-RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV---- 172
                RD ++P     K +  Q  AG  HS+ LT EG V+ WG+     D+ Q+ +    
Sbjct: 316 TAPNLRDNILPAGI--KAVAVQ--AGRYHSLALTSEGTVYAWGR----NDVGQLGLGTIT 367

Query: 173 -----PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                P  + GL  V  +A G  H LAL+ DG++WAWG+N  G+LGTGD  P S P  V 
Sbjct: 368 APQESPALIPGLSDVIALAAGDDHTLALKADGSVWAWGDNPNGELGTGDITPYSVPTAVS 427

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L G+    IAAGG HS AL  DG V  WG   HG+LG G N  S+  VP    +    D
Sbjct: 428 NLPGVKA--IAAGGNHSVALLADGTVRTWGYNNHGQLGNGSNTNSNVPVP----VTGLTD 481

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +V ++ G   ++A+  +G + ++G  D  +LG G   TTG     P+++        G+ 
Sbjct: 482 VVGIAAGYEFTLAVLSNGSVKAWGHDDSFQLGNG--ATTGD-QTTPVDV-------QGIP 531

Query: 348 RRWIAKLVACGGRHTLAIVE 367
                + +  G  H LA+++
Sbjct: 532 TGRSVRGLTAGIFHALALLD 551



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 140/360 (38%), Gaps = 109/360 (30%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
           +WG    GQLG       +      +L    V S+  G  +++A+ +DG+  T       
Sbjct: 244 SWGDNTYGQLGRATTSPSDSTPTQASLINDAV-SISLGEYHAIALTNDGRVVTLGRDDYG 302

Query: 62  -------------------ENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                              +NI P+ + A++    VQA  G +H LA+  +G  YAWG N
Sbjct: 303 QLGDGPGDSSGTHTAPNLRDNILPAGIKAVA----VQA--GRYHSLALTSEGTVYAWGRN 356

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVW 156
           + GQ G                I  PQ  +P LI     V  +AAG  H++ L  +G VW
Sbjct: 357 DVGQLG-------------LGTITAPQE-SPALIPGLSDVIALAAGDDHTLALKADGSVW 402

Query: 157 TWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
            WG         GDI   SVP  V  L  VK IA G  H++AL  DG +  WG N +GQL
Sbjct: 403 AWGDNPNGELGTGDITPYSVPTAVSNLPGVKAIAAGGNHSVALLADGTVRTWGYNNHGQL 462

Query: 213 GTGDTQPRSQPIPVQGLSGL---------------------------------------- 232
           G G     + P+PV GL+ +                                        
Sbjct: 463 GNGSNTNSNVPVPVTGLTDVVGIAAGYEFTLAVLSNGSVKAWGHDDSFQLGNGATTGDQT 522

Query: 233 TLVDI------------AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           T VD+             AG +H+ AL DDG +  WG    G+LG G  + S    P  +
Sbjct: 523 TPVDVQGIPTGRSVRGLTAGIFHALALLDDGSMVAWGSNVQGQLGDGTPNSSDTAKPVSI 582



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 98/184 (53%), Gaps = 17/184 (9%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +A G + + A++ +G +W+WG+N YGQLG   T P S   P Q       V I+ G +H+
Sbjct: 226 LAAGGYFSAAIKPNGQVWSWGDNTYGQLGRATTSP-SDSTPTQASLINDAVSISLGEYHA 284

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV--NLL-AGEDIVQVSCGGTHSVAL 301
            ALT+DG V   GR ++G+LG G  D S       +  N+L AG   V V  G  HS+AL
Sbjct: 285 IALTNDGRVVTLGRDDYGQLGDGPGDSSGTHTAPNLRDNILPAGIKAVAVQAGRYHSLAL 344

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           T +G ++++GR D G+LG G   T   P E P  IP   +         IA  +A G  H
Sbjct: 345 TSEGTVYAWGRNDVGQLGLG---TITAPQESPALIPGLSDV--------IA--LAAGDDH 391

Query: 362 TLAI 365
           TLA+
Sbjct: 392 TLAL 395



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 49/260 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           + S  ++ AWG  + GQLG+G     +E   ++  L    V ++ AG  ++LA+  DG  
Sbjct: 344 LTSEGTVYAWGRNDVGQLGLGTITAPQESPALIPGLS--DVIALAAGDDHTLALKADGSV 401

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                              ++P+ V+ L   K + A  GG H +A+   G    WG N +
Sbjct: 402 WAWGDNPNGELGTGDITPYSVPTAVSNLPGVKAIAA--GGNHSVALLADGTVRTWGYNNH 459

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQ G         G     ++ +P      ++   +AAG   ++ +   G V  WG    
Sbjct: 460 GQLGN--------GSNTNSNVPVPVTGLTDVV--GIAAGYEFTLAVLSNGSVKAWGH--- 506

Query: 164 PGDIKQI---------SVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
             D  Q+         + PV VQG+     V+ +  G FH LAL +DG++ AWG+N  GQ
Sbjct: 507 -DDSFQLGNGATTGDQTTPVDVQGIPTGRSVRGLTAGIFHALALLDDGSMVAWGSNVQGQ 565

Query: 212 LGTG--DTQPRSQPIPVQGL 229
           LG G  ++   ++P+ + G+
Sbjct: 566 LGDGTPNSSDTAKPVSITGV 585


>gi|410957262|ref|XP_003985250.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Felis catus]
          Length = 1031

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 30/301 (9%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           ++ QAA G  H L +   G  ++ G N  GQ G    ++++  +        P +    L
Sbjct: 35  ELRQAASGERHSLLLLSDGAVHSCGDNSRGQLGRRGLQREEQPK--------PIQALETL 86

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+I+ +P +++ L  +K+I V  
Sbjct: 87  RVELVSCGKEHSLAVCYKGRVFAWGAGSEGQLGIGEFKEINLIPQKIKTLTGIKIIQVSC 146

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL EDG +++WG+N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 147 GNYHSLALSEDGQVFSWGSNSHGQLGLGKELPSQASPQRVRSLDGIPLAQVAAGGAHSFA 206

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L F G N       P+ V+ L    +V +SCG  H+  LT++G
Sbjct: 207 LSLSGTSFGWGSNNAGQLAFFGSNVPVQSYKPRSVSALKTLGVVYISCGHEHTAVLTQNG 266

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +F+FG    G+LG+        P  +           +G++   +   + CG  HTLA 
Sbjct: 267 KVFTFGDNSCGQLGHSPTAEKTGPQLM-----------EGIE--GLVSQIDCGSYHTLAY 313

Query: 366 V 366
           V
Sbjct: 314 V 314



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 136/294 (46%), Gaps = 51/294 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ + G    GQLG    +  E    ++ALE  +V  V  G  +SLA+C  G+  
Sbjct: 49  LLSDGAVHSCGDNSRGQLGRRGLQREEQPKPIQALETLRVELVSCGKEHSLAVCYKGRVF 108

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +   IP ++  L+  KI+Q + G +H LA+ + G+ ++WG N +
Sbjct: 109 AWGAGSEGQLGIGEFKEINLIPQKIKTLTGIKIIQVSCGNYHSLALSEDGQVFSWGSNSH 168

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E              +P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 169 GQLGLGKE--------------LPSQASPQRVRSLDGIPLAQVAAGGAHSFALSLSGTSF 214

Query: 157 TWGQPWPPGDIKQI--SVPVR------VQGLEQ--VKLIAVGAFHNLALQEDGALWAWGN 206
            WG     G +     +VPV+      V  L+   V  I+ G  H   L ++G ++ +G+
Sbjct: 215 GWGSN-NAGQLAFFGSNVPVQSYKPRSVSALKTLGVVYISCGHEHTAVLTQNGKVFTFGD 273

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           N  GQLG   T  ++ P  ++G+ GL +  I  G +H+ A +   G+V  +GRG
Sbjct: 274 NSCGQLGHSPTAEKTGPQLMEGIEGL-VSQIDCGSYHTLAYVYTTGQVVSFGRG 326


>gi|196005109|ref|XP_002112421.1| hypothetical protein TRIADDRAFT_56425 [Trichoplax adhaerens]
 gi|190584462|gb|EDV24531.1| hypothetical protein TRIADDRAFT_56425 [Trichoplax adhaerens]
          Length = 4625

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 188/403 (46%), Gaps = 67/403 (16%)

Query: 3    STTSIIAWGSGEDGQLG-IGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAIC-DDGK 58
            S      WG    GQLG +   + +  V   ++ AL P    + VAG   +L I   +GK
Sbjct: 3768 SNHKFYVWGHNHRGQLGGVQGTKVKSPVINDIIAALRP----TAVAGGEQTLFILTSEGK 3823

Query: 59   T--------------KTENI--PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGG 100
                           +++NI  P  +  L + KI + ++  GG H + +      ++WG 
Sbjct: 3824 VYASGLGGSGRLGIGRSDNIVTPVIIEPLQHLKIEKLSVHSGGRHAMVLTSNFEVFSWGD 3883

Query: 101  NEYGQCGEEPERKDDTGR----ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
             E G+ G   +   +T R    +L + IV             ++ G +HS  +T +G ++
Sbjct: 3884 GEDGKLGHGDKLSSETPRKIEALLGKQIV------------HISCGSSHSAAITSKGELY 3931

Query: 157  TWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNE 208
            TWG+        GD      P  ++ L+  K+I V    G    LA+ +D  +W+WG+ +
Sbjct: 3932 TWGKGRYGRLGHGDGDDCLKPKLLEALKSYKVIDVACGSGDAQTLAITDDDCVWSWGDGD 3991

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            YG+LG G +    +P+ ++ L G+ +  +  G   S ALT +G++Y WG+G++ RLG G 
Sbjct: 3992 YGKLGRGGSDGCKKPLRIESLIGMAVCKVECGSQFSVALTKNGDLYTWGKGDYYRLGHGT 4051

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
            ND   +  P+KV  L G+ IV V+ G  H VA T  G +F++G  D G+LG G    T  
Sbjct: 4052 NDHVRR--PRKVACLQGKQIVTVAAGSLHCVACTDAGEVFTWGDNDEGQLGNG----TLN 4105

Query: 329  PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
            P+  P  +    N    ++R      V CG  H+ A   W TE
Sbjct: 4106 PIPEPTLVTVLENV--KLNR------VGCGSAHSFA---WSTE 4137



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 184/387 (47%), Gaps = 48/387 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
            + +  WG  + GQLG     + +    +K +   +  S+  GS+    +  DGK      
Sbjct: 2869 SRVFVWGLNDKGQLGGCKGSKVKSPTEMKNIAALRPVSIAGGSKTVFIVTYDGKVYVSGE 2928

Query: 60   ---------KTENI--PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      TENI  P Q++ L+   + +  +  GG H L +  +G+ ++WG    G+ 
Sbjct: 2929 GANGRLGLGNTENISIPVQLDTLNMHFVKKVTVHPGGRHSLCITREGKVFSWGEGIDGKL 2988

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G      D T R+      + +    KLIV ++A G +HS  +T +G ++TWG       
Sbjct: 2989 GH----GDVTSRL---SPTLIEALESKLIV-EIACGSSHSAAVTADGELYTWGLGDYGRL 3040

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD K + +P +V+ L+  K+I +         LAL ++  +W+WG+ ++G+LG G ++
Sbjct: 3041 GHGDSKTLHIPKQVKALQDYKVIDIACGSRDAQTLALTDNNCVWSWGDGDFGKLGRGGSE 3100

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
              + P  +  L G  +  IA G   S AL+  G+V+ WG+G++ RLG G++  S    PQ
Sbjct: 3101 GCNIPQKIDALCGRDVCRIACGAQFSLALSTTGKVWTWGKGDYYRLGHGND--SHYRSPQ 3158

Query: 279  KVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             +   L  + I +++ G  H +A+T  G ++S+G  DHG+ G G      +P      + 
Sbjct: 3159 LIEGPLKKKRITEIAVGALHCLAVTDTGEVYSWGDNDHGQQGNGNTTVNKRPQICLGEL- 3217

Query: 338  APRNAGDGVDRRWIAKLVACGGRHTLA 364
                  DGV    I    ACG  H++A
Sbjct: 3218 ------DGVKISHI----ACGSSHSIA 3234



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 157/324 (48%), Gaps = 34/324 (10%)

Query: 54   CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
            C   K K+   P+++  ++  + V  A G      V   G+ Y  G    G+ G      
Sbjct: 2885 CKGSKVKS---PTEMKNIAALRPVSIAGGSKTVFIVTYDGKVYVSGEGANGRLG------ 2935

Query: 114  DDTGRILRRDIVIPQRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWGQ----PWPPGDI 167
               G      I +         V++V    GG HS+ +TREG V++WG+        GD+
Sbjct: 2936 --LGNTENISIPVQLDTLNMHFVKKVTVHPGGRHSLCITREGKVFSWGEGIDGKLGHGDV 2993

Query: 168  KQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 P  ++ LE   +  IA G+ H+ A+  DG L+ WG  +YG+LG GD++    P  
Sbjct: 2994 TSRLSPTLIEALESKLIVEIACGSSHSAAVTADGELYTWGLGDYGRLGHGDSKTLHIPKQ 3053

Query: 226  VQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            V+ L    ++DIA G     + ALTD+  V+ WG G+ G+LG G ++  +  +PQK++ L
Sbjct: 3054 VKALQDYKVIDIACGSRDAQTLALTDNNCVWSWGDGDFGKLGRGGSEGCN--IPQKIDAL 3111

Query: 284  AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
             G D+ +++CG   S+AL+  G ++++G+GD+ RLG+G       P  +           
Sbjct: 3112 CGRDVCRIACGAQFSLALSTTGKVWTWGKGDYYRLGHGNDSHYRSPQLI----------- 3160

Query: 344  DGVDRRWIAKLVACGGRHTLAIVE 367
            +G  ++     +A G  H LA+ +
Sbjct: 3161 EGPLKKKRITEIAVGALHCLAVTD 3184



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 142/290 (48%), Gaps = 30/290 (10%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTE------NIPSQVNALSNTKI--VQAAIGGWHCLAVDD 91
           ++ ++  S N +A+ ++G+  +         P  +++L + KI  + A + G H LA+  
Sbjct: 471 IKQIMCSSDNIIALTNNGRVYSLAYNARCEAPVLLDSLIDIKIKKIAANVEGEHYLALSS 530

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y+WG  + G+ G         G I R   ++ +    K  + Q+A G T+S  +T 
Sbjct: 531 DGCVYSWGSGDGGRLGH--------GDIRREPELVKELVNKK--ITQIACGSTYSAAVTS 580

Query: 152 EGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWA 203
            G ++TWG+        G+ +   +P  V GL    ++ V    G  H LA+ +DG +W+
Sbjct: 581 NGELYTWGRGSYGRLGHGNSEDRLLPTLVAGLSGSHVVDVACGSGDAHTLAIDKDGIVWS 640

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLS--GLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           WG+ +YG+LG G +     P  V+ L      +V++  G   S AL  DG V+ WG+ + 
Sbjct: 641 WGDGDYGKLGRGGSDCCKVPKVVETLKHHNKYIVNVLCGSQFSVALGKDGTVWTWGKSDG 700

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            RLG G  D      P+ V  L    IV ++ G +H +ALT +  IF++G
Sbjct: 701 YRLGHGTLDHVR--YPKMVEGLINYHIVDIAVGPSHCLALTDNCQIFTWG 748



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 20/211 (9%)

Query: 129 RC-APKLI-------VRQVAAG--GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
           RC AP L+       ++++AA   G H + L+ +G V++WG         GDI++    V
Sbjct: 498 RCEAPVLLDSLIDIKIKKIAANVEGEHYLALSSDGCVYSWGSGDGGRLGHGDIRREPELV 557

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +    +++  IA G+ ++ A+  +G L+ WG   YG+LG G+++ R  P  V GLSG  +
Sbjct: 558 KELVNKKITQIACGSTYSAAVTSNGELYTWGRGSYGRLGHGNSEDRLLPTLVAGLSGSHV 617

Query: 235 VDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED--IVQ 290
           VD+A  +G  H+ A+  DG V+ WG G++G+LG G +D     VP+ V  L   +  IV 
Sbjct: 618 VDVACGSGDAHTLAIDKDGIVWSWGDGDYGKLGRGGSDCCK--VPKVVETLKHHNKYIVN 675

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           V CG   SVAL +DG ++++G+ D  RLG+G
Sbjct: 676 VLCGSQFSVALGKDGTVWTWGKSDGYRLGHG 706



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 146/351 (41%), Gaps = 66/351 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S   + +WG GEDG+LG G+    E                                 
Sbjct: 3872 LTSNFEVFSWGDGEDGKLGHGDKLSSE--------------------------------- 3898

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                P ++ AL   +IV  + G  H  A+  +G  Y WG   YG+ G       D    L
Sbjct: 3899 ---TPRKIEALLGKQIVHISCGSSHSAAITSKGELYTWGKGRYGRLGH-----GDGDDCL 3950

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            +  ++   + + K+I     +G   ++ +T +  VW+WG     GD  ++          
Sbjct: 3951 KPKLLEALK-SYKVIDVACGSGDAQTLAITDDDCVWSWGD----GDYGKLGRGGSDGCKK 4005

Query: 173  PVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P+R++ L    V  +  G+  ++AL ++G L+ WG  +Y +LG G      +P  V  L 
Sbjct: 4006 PLRIESLIGMAVCKVECGSQFSVALTKNGDLYTWGKGDYYRLGHGTNDHVRRPRKVACLQ 4065

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  +V +AAG  H  A TD GEV+ WG  + G+LG G  +   +  P  V +L    + +
Sbjct: 4066 GKQIVTVAAGSLHCVACTDAGEVFTWGDNDEGQLGNGTLNPIPE--PTLVTVLENVKLNR 4123

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            V CG  HS A + +  I      D G +     V       +P  +PA RN
Sbjct: 4124 VGCGSAHSFAWSTEAPI------DIGYMPNQIPVEFNHLHHLP--LPALRN 4166



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 112/255 (43%), Gaps = 25/255 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  V  L N KI Q A G  +  AV   G  Y WG   YG+ G      +   R+L    
Sbjct: 554 PELVKELVNKKITQIACGSTYSAAVTSNGELYTWGRGSYGRLGH----GNSEDRLL--PT 607

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRV 176
           ++       ++     +G  H++ + ++G VW+WG     GD  ++         VP  V
Sbjct: 608 LVAGLSGSHVVDVACGSGDAHTLAIDKDGIVWSWGD----GDYGKLGRGGSDCCKVPKVV 663

Query: 177 QGLEQ----VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           + L+     +  +  G+  ++AL +DG +W WG ++  +LG G       P  V+GL   
Sbjct: 664 ETLKHHNKYIVNVLCGSQFSVALGKDGTVWTWGKSDGYRLGHGTLDHVRYPKMVEGLINY 723

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +VDIA G  H  ALTD+ +++ WG          DN     M P  ++ +  E I  V+
Sbjct: 724 HIVDIAVGPSHCLALTDNCQIFTWGSDVQKYALSSDN---YNMEPTCISAINKEFIAGVA 780

Query: 293 CGGTHSVALTRDGHI 307
           CG   +   T  G +
Sbjct: 781 CGPAQNFLWTSGGKL 795



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 16/170 (9%)

Query: 198  DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            D  ++ WG N+ GQLG         P  ++ ++ L  V IA G      +T DG+VY  G
Sbjct: 2868 DSRVFVWGLNDKGQLGGCKGSKVKSPTEMKNIAALRPVSIAGGSKTVFIVTYDGKVYVSG 2927

Query: 258  RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGDH 315
             G +GRLG G+ +  S  +P +++ L    + +V+   GG HS+ +TR+G +FS+G G  
Sbjct: 2928 EGANGRLGLGNTENIS--IPVQLDTLNMHFVKKVTVHPGGRHSLCITREGKVFSWGEGID 2985

Query: 316  GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+LG+G   +   P  +           + ++ + I + +ACG  H+ A+
Sbjct: 2986 GKLGHGDVTSRLSPTLI-----------EALESKLIVE-IACGSSHSAAV 3023



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 34/232 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++S   + +WGSG+ G+LG G+   E E   +VK L   K+  +  GS  S A+  +G+ 
Sbjct: 528 LSSDGCVYSWGSGDGGRLGHGDIRREPE---LVKELVNKKITQIACGSTYSAAVTSNGEL 584

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGN 101
            T                  +P+ V  LS + +V  A G    H LA+D  G  ++WG  
Sbjct: 585 YTWGRGSYGRLGHGNSEDRLLPTLVAGLSGSHVVDVACGSGDAHTLAIDKDGIVWSWGDG 644

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           +YG+ G       D  ++ +  +V   +   K IV  V  G   SV L ++G VWTWG+ 
Sbjct: 645 DYGKLGRG---GSDCCKVPK--VVETLKHHNKYIV-NVLCGSQFSVALGKDGTVWTWGKS 698

Query: 162 ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNN 207
                  G +  +  P  V+GL    +  IAVG  H LAL ++  ++ WG++
Sbjct: 699 DGYRLGHGTLDHVRYPKMVEGLINYHIVDIAVGPSHCLALTDNCQIFTWGSD 750


>gi|148672794|gb|EDL04741.1| mCG16651 [Mus musculus]
          Length = 462

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 19/257 (7%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S  +++QAA G  H L +    R Y+ G N +GQ G+  ++  +           P +  
Sbjct: 20  SGIELLQAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTERPE--------PIQAL 71

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIA 186
             L V  V+ G  HSV +  +G V+ WG         G+ K+IS +P +++ L  +K+I 
Sbjct: 72  NDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQ 131

Query: 187 V--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGW 242
           V  G +H+LAL EDG +++WG N  GQLG G    RSQ IP  V+ L G+ L  +AAGG 
Sbjct: 132 VSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNS-RSQAIPQKVKSLEGIPLAQVAAGGT 190

Query: 243 HSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           HS AL+  G  +GWG    G+L   G+  K     P  +  L    ++ +SCG  H+  L
Sbjct: 191 HSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVL 250

Query: 302 TRDGHIFSFGRGDHGRL 318
           T +G +F+FG    G+L
Sbjct: 251 TEEGQVFTFGGNSSGQL 267



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 21/239 (8%)

Query: 138 QVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGLE--QVKLIAVGAF 190
           Q A+G  HS++L     V++     WGQ     D +    P  +Q L    V L++ G  
Sbjct: 26  QAASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRD-QSTERPEPIQALNDLHVDLVSCGKE 84

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           H++A+   G ++AWG    GQLG G+ +  S  P  ++ L+G+ ++ ++ G +HS AL++
Sbjct: 85  HSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSE 144

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WGR   G+LG G N +S + +PQKV  L G  + QV+ GGTHS AL+  G  F 
Sbjct: 145 DGHVFSWGRNSEGQLGLGKNSRS-QAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFG 203

Query: 310 FGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G    G+L   G KV   + +  P +I A +N             ++CG  HT  + E
Sbjct: 204 WGSNRSGQLALSGNKVK--EQIYKPHSIGALKNLS--------VIYISCGYEHTAVLTE 252



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 13/204 (6%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           W  G  K   +     G+E ++  A G  H+L L  +  +++ G+N +GQLG    Q   
Sbjct: 5   WAAGSRKPRRLKAGTSGIELLQ-AASGEHHSLLLFSNHRVYSCGDNSWGQLGQRRDQSTE 63

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P P+Q L+ L +  ++ G  HS A+   G+V+ WG G  G+LG G+  + S M P K+ 
Sbjct: 64  RPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFM-PTKIK 122

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            LAG  I+QVSCG  HS+AL+ DGH+FS+GR   G+LG G+   +         IP    
Sbjct: 123 ALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQA-------IPQKVK 175

Query: 342 AGDGVDRRWIAKLVACGGRHTLAI 365
           + +G+    +A+ VA GG H+ A+
Sbjct: 176 SLEGIP---LAQ-VAAGGTHSFAL 195



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 48/324 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S   + + G    GQLG   ++  E    ++AL    V  V  G  +S+A+C  GK  
Sbjct: 37  LFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVF 96

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +   +P+++ AL+  KI+Q + G +H LA+ + G  ++WG N  
Sbjct: 97  AWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSE 156

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW--- 158
           GQ G              R   IPQ+      + + QVAAGGTHS  L+  G  + W   
Sbjct: 157 GQLGLGKN---------SRSQAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSN 207

Query: 159 --GQPWPPGD--IKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQL 212
             GQ    G+   +QI  P  +  L+ + +I +  G  H   L E+G ++ +G N  GQL
Sbjct: 208 RSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 267

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFGDNDK 271
                  +  P  ++G+ G  +  I    +H+ A +   G+V   GRG         ++ 
Sbjct: 268 QPSPRSGQRGPQLIEGIGG-RVSQIECASYHTIAYVYTTGQVVSLGRGPS-----HTSNP 321

Query: 272 SSKMVPQKVN----LLAGEDIVQV 291
           + +  P + +    LLA ED+V +
Sbjct: 322 THQEAPAENSDITCLLAAEDLVDI 345


>gi|119626423|gb|EAX06018.1| hect domain and RLD 6, isoform CRA_a [Homo sapiens]
          Length = 385

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 145/304 (47%), Gaps = 34/304 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIVE 367
           A V 
Sbjct: 301 AYVH 304



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 137/326 (42%), Gaps = 64/326 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L++ KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSN- 208

Query: 163 PPGDIK--------QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             G +         Q + P+ V  L+   V  I+ G  H   L +DG ++ +G+N  GQL
Sbjct: 209 SAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQL 268

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G   T  +  P  V+ + GL +  I  G +H+ A       Y    G+    G G +D S
Sbjct: 269 GYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVVSFGHGPSDTS 320

Query: 273 SKMVPQKVN-------LLAGEDIVQV 291
               P+ +        L++ ED V V
Sbjct: 321 KPTHPEALTENFDISCLISAEDFVDV 346



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L    I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKIMTLNDIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 54/232 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  -------------KTENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           N+P Q N      AL N  +V  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTR-EG 153
           N  GQ G  P                P++  P+L+      V Q+  G  H++      G
Sbjct: 263 NRSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTG 307

Query: 154 HVWTWG-------QPWPPGDIKQ---ISVPVRVQGL--EQVKLIAVGAFHNL 193
            V ++G       +P  P  + +   IS  +  +     QVK I  G + N 
Sbjct: 308 QVVSFGHGPSDTSKPTHPEALTENFDISCLISAEDFVDVQVKHIFAGTYANF 359


>gi|444915470|ref|ZP_21235602.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444713401|gb|ELW54301.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 852

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 174/357 (48%), Gaps = 45/357 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG  + GQLG G    R     V  L    +R+V A S +SLA+ DDG        
Sbjct: 160 TVWAWGPNDYGQLGDGTTTNRPVPVQVGGLS--GIRAVAASSDHSLAVRDDGTVWAWGIN 217

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P QV  LS+ K V A  G  + LAV   G  +AWG N  GQ G+ 
Sbjct: 218 SSGQLGDGTTNDRLTPVQVAGLSSIKRVAAGDG--YSLAVHGDGTVWAWGINSSGQLGDG 275

Query: 110 PERKDDT-GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                 T GR+     V+    A   ++     G  H + +  +G VW WG         
Sbjct: 276 TTTDRLTPGRVKGLSEVVEVSAAKYSLL-----GSAHVLAVRGDGTVWAWGNNGSGQLGD 330

Query: 165 GDIKQISVPVRVQGLEQVKLIAVG-AF--------HNLALQEDGALWAWGNNEYGQLGTG 215
           G       PV+V  L+ VK IAVG +F        ++LA++ DG +WAWG+N  GQLG G
Sbjct: 331 GTTTDRLTPVQVSELDGVKAIAVGNSFPLSNSNGSYSLAVRGDGTVWAWGSNSTGQLGDG 390

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
            T  RS+P  V  LSG+T V  ++   H+ A+ DDG V+ WG+  +G+L  GD   + ++
Sbjct: 391 TTISRSRPAQVNALSGITAVSASSD--HALAMRDDGTVWSWGKNTNGKL--GDETTAHRL 446

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +P +V+ L+G  +  V+ G +HSV++  DG  +++G    G LG G    +  P++ 
Sbjct: 447 IPVQVHGLSG--VRSVAAGESHSVSVREDGKAWAWGYRGMGLLGDGAMFLSFVPVQT 501



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 167/349 (47%), Gaps = 42/349 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT----KT 61
           ++ AWGS   GQLG G    R     V AL    + +V A S ++LA+ DDG      K 
Sbjct: 375 TVWAWGSNSTGQLGDGTTISRSRPAQVNALS--GITAVSASSDHALAMRDDGTVWSWGKN 432

Query: 62  EN------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
            N            IP QV+ LS  + V A  G  H ++V + G+A+AWG    G  G  
Sbjct: 433 TNGKLGDETTAHRLIPVQVHGLSGVRSVAA--GESHSVSVREDGKAWAWGYRGMGLLG-- 488

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                D    L     +P +        Q+A+ G  S+ +  +  +W WG     GD+  
Sbjct: 489 -----DGAMFLS---FVPVQTMGLTATAQIASHGNRSLAVKEDNTLWVWGSS-SLGDLGD 539

Query: 170 ISV---PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            S    PV    L+ VK +A G  ++LA++ +G+LWAWG+N  GQLG G T  R  P+PV
Sbjct: 540 GSTGAHPVPSSILDDVKAVAAGNDYSLAVRNNGSLWAWGSNSIGQLGDGSTTNRLTPVPV 599

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL    +V  AA    S AL  DG V+ WG    G+L  GD    ++  P  V  L   
Sbjct: 600 NGLE--NVVGAAASFSVSLALRSDGTVWAWGLNSVGQL--GDGSTINRSTPGPVGGLV-- 653

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            IV V+  G HS+AL  DG ++++G    G+LG G   TT QP  V ++
Sbjct: 654 HIVGVATSGGHSLALRNDGTVWAWGGNHDGQLGDG--TTTNQPKPVQVS 700



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 108/290 (37%), Positives = 133/290 (45%), Gaps = 32/290 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALE-----------PYKVRS---VVAGSRNSL 51
           S+ AWGS   GQLG G+   R     V  LE              +RS   V A   NS+
Sbjct: 573 SLWAWGSNSIGQLGDGSTTNRLTPVPVNGLENVVGAAASFSVSLALRSDGTVWAWGLNSV 632

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T   + P  V  L    IV  A  G H LA+ + G  +AWGGN  GQ G+   
Sbjct: 633 GQLGDGSTINRSTPGPVGGL--VHIVGVATSGGHSLALRNDGTVWAWGGNHDGQLGDGTT 690

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                          P + +    V+ VAA    S V+   G VW WG  +      G  
Sbjct: 691 TNQPK----------PVQVSGLSGVKAVAAAIVSSAVVRDNGTVWAWGDNYSGQLGDGTT 740

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                PV V GL  VK +A G  H LAL+ DG +WAWG+N Y QLG G    RS P+ V+
Sbjct: 741 TDRLTPVLVSGLSGVKALASGNHHFLALRNDGTVWAWGDNYYSQLGDGTRTQRSTPVQVR 800

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           GLS + L  IAAG  HS A+  DG V+ WG    G+LG G  D S+  VP
Sbjct: 801 GLSDVKL--IAAGENHSMAVRKDGTVWTWGLNTSGQLGNGLLDFSALPVP 848



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 160/348 (45%), Gaps = 44/348 (12%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD-------------- 55
           WGS   G LG G+         V +     V++V AG+  SLA+ +              
Sbjct: 529 WGSSSLGDLGDGSTGAHP----VPSSILDDVKAVAAGNDYSLAVRNNGSLWAWGSNSIGQ 584

Query: 56  --DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
             DG T     P  VN L N  +V AA      LA+   G  +AWG N  GQ G+     
Sbjct: 585 LGDGSTTNRLTPVPVNGLEN--VVGAAASFSVSLALRSDGTVWAWGLNSVGQLGD----- 637

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
              G  + R    P      + +  VA  G HS+ L  +G VW WG         G    
Sbjct: 638 ---GSTINRST--PGPVGGLVHIVGVATSGGHSLALRNDGTVWAWGGNHDGQLGDGTTTN 692

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
              PV+V GL  VK +A     +  ++++G +WAWG+N  GQLG G T  R  P+ V GL
Sbjct: 693 QPKPVQVSGLSGVKAVAAAIVSSAVVRDNGTVWAWGDNYSGQLGDGTTTDRLTPVLVSGL 752

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           SG+    +A+G  H  AL +DG V+ WG   + +LG  D  ++ +  P +V  L+  D+ 
Sbjct: 753 SGVKA--LASGNHHFLALRNDGTVWAWGDNYYSQLG--DGTRTQRSTPVQVRGLS--DVK 806

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            ++ G  HS+A+ +DG ++++G    G+LG G    +  P  VP   P
Sbjct: 807 LIAAGENHSMAVRKDGTVWTWGLNTSGQLGNGLLDFSALP--VPCTRP 852



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 147/318 (46%), Gaps = 38/318 (11%)

Query: 30  CVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAV 89
           CV   + P    +V A  +N+L +         + P+ +           A+G  H L +
Sbjct: 107 CVPSGVTP----TVTATVQNALGLSASASFVLSSSPTCIAP-------AVAVGTQHTLLL 155

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
              G  +AWG N+YGQ G+        G    R   +P +      +R VAA   HS+ +
Sbjct: 156 RPDGTVWAWGPNDYGQLGD--------GTTTNRP--VPVQVGGLSGIRAVAASSDHSLAV 205

Query: 150 TREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
             +G VW WG         G       PV+V GL  +K +A G  ++LA+  DG +WAWG
Sbjct: 206 RDDGTVWAWGINSSGQLGDGTTNDRLTPVQVAGLSSIKRVAAGDGYSLAVHGDGTVWAWG 265

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA----GGWHSTALTDDGEVYGWGRGEH 261
            N  GQLG G T  R  P  V+GLS +  V  A     G  H  A+  DG V+ WG    
Sbjct: 266 INSSGQLGDGTTTDRLTPGRVKGLSEVVEVSAAKYSLLGSAHVLAVRGDGTVWAWGNNGS 325

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-------SCGGTHSVALTRDGHIFSFGRGD 314
           G+L  GD   + ++ P +V+ L G   + V       +  G++S+A+  DG ++++G   
Sbjct: 326 GQL--GDGTTTDRLTPVQVSELDGVKAIAVGNSFPLSNSNGSYSLAVRGDGTVWAWGSNS 383

Query: 315 HGRLGYGRKVTTGQPMEV 332
            G+LG G  ++  +P +V
Sbjct: 384 TGQLGDGTTISRSRPAQV 401


>gi|344284964|ref|XP_003414234.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Loxodonta
           africana]
          Length = 1018

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 151/308 (49%), Gaps = 44/308 (14%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           ++ QAA G  H L +   G  +A G N  GQ G             RR +  P R  P L
Sbjct: 22  ELRQAASGERHSLLLLSDGTVHACGDNSCGQLG-------------RRGV--PHRKRPGL 66

Query: 135 I-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQV 182
           I       V  ++ G  HS+ +  +G V+ WG         G+ K+++  P++V+ L  +
Sbjct: 67  IQALETLNVDLLSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKELNFTPMKVKALAGI 126

Query: 183 KLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAA 239
           K+I V  G +H+LAL +DG +++WGNN +GQLG G +   +  P  V+ L G+ L  +AA
Sbjct: 127 KIIQVSCGHYHSLALSQDGQVFSWGNNSHGQLGLGKEFLSQESPQRVKSLEGIPLAQVAA 186

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           GG HS AL+  G  +GWG    G+L   G+N       P+ +  L    +V +SCG  H+
Sbjct: 187 GGAHSFALSLSGTSFGWGSNNAGQLALSGNNVPVQSYKPRSIGALKELGVVYISCGSEHT 246

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             LT+DG +F+FG    G+LG+G       P  V           +G+D   +   + CG
Sbjct: 247 AVLTQDGKVFTFGDNSSGQLGHGPTAEKRGPQLV-----------EGID--GLVSQIDCG 293

Query: 359 GRHTLAIV 366
             HTL  V
Sbjct: 294 SYHTLVYV 301



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 48/324 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ A G    GQLG      R+   +++ALE   V  +  G  +SLA+C  G+  
Sbjct: 36  LLSDGTVHACGDNSCGQLGRRGVPHRKRPGLIQALETLNVDLLSCGKEHSLAVCHKGRVF 95

Query: 60  ---------------KTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          K  N  P +V AL+  KI+Q + G +H LA+   G+ ++WG N +
Sbjct: 96  AWGAGSEGQLGIGEFKELNFTPMKVKALAGIKIIQVSCGHYHSLALSQDGQVFSWGNNSH 155

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G   E               PQR      + + QVAAGG HS  L+  G  + WG  
Sbjct: 156 GQLGLGKEFLSQES---------PQRVKSLEGIPLAQVAAGGAHSFALSLSGTSFGWGS- 205

Query: 162 WPPGDIKQIS-----VPVR------VQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNE 208
               +  Q++     VPV+      +  L++  V  I+ G+ H   L +DG ++ +G+N 
Sbjct: 206 ---NNAGQLALSGNNVPVQSYKPRSIGALKELGVVYISCGSEHTAVLTQDGKVFTFGDNS 262

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFG 267
            GQLG G T  +  P  V+G+ GL +  I  G +H+   +    +V  +GRG        
Sbjct: 263 SGQLGHGPTAEKRGPQLVEGIDGL-VSQIDCGSYHTLVYVYTTRQVISFGRGPSDTTSST 321

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQV 291
            +D  +K       L++ +D+V V
Sbjct: 322 RSDALTKNSDVSC-LISADDLVNV 344


>gi|198462494|ref|XP_002135307.1| GA28417 [Drosophila pseudoobscura pseudoobscura]
 gi|198150848|gb|EDY73934.1| GA28417 [Drosophila pseudoobscura pseudoobscura]
          Length = 1052

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 187/399 (46%), Gaps = 42/399 (10%)

Query: 6   SIIAWGSGEDGQLGIG--NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-- 61
           ++  WG    GQLG+G   NE+      ++      V+ +  G R++L +  +G+     
Sbjct: 2   ALYCWGDASHGQLGLGGIENEQILLPSQIEFKPDSPVQQIACGHRHTLFLTANGQVYACG 61

Query: 62  --------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +P++    +  L    ++Q A G  H +A+ + G+  +WG N+ GQ G  
Sbjct: 62  NNDHHQLGHELPTKRPLPIPELQAYVVIQIACGSRHSMALTEWGQILSWGDNDCGQVGHS 121

Query: 110 PERK-DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------ 162
            +    +  +ILR  +           V Q+A G  HS+ LT  G +++WG         
Sbjct: 122 TDNDVIELPKILRFLV--------SRTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGV 173

Query: 163 -PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             P D+   + P+R+  +  + L  IA G  H+  + +  A++ WG N  GQLG  D Q 
Sbjct: 174 QSPKDLPHSNAPLRLTTILGIPLATIACGGNHSFLISKSSAVFGWGKNTCGQLGLNDEQN 233

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P  ++ +  L +  +  G  +S  LT++G V+  G G +G+LG G ++  ++M+P+ 
Sbjct: 234 RAYPSQLKSMRTLGVRFVTCGDEYSVFLTNEGGVFTCGAGNYGQLGHGASN--NEMIPRM 291

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPME-----VP 333
           V  L G  I QV+CG  H++AL    G ++SFG G  G+LG    ++   P       V 
Sbjct: 292 VIELMGSTITQVACGNRHTLALVPSGGRVYSFGLGASGQLGTRNTISQTLPKVVIGPWVS 351

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
            N  A   + +G D+  + + +  GG  ++    +  ++
Sbjct: 352 PNGSALMESSEGADKSVVIRKIFSGGDQSIVTTTFYVDK 390



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 31/205 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           ++ ++++  WG    GQLG+ + + R +   +K++    VR V  G   S+ + ++    
Sbjct: 209 ISKSSAVFGWGKNTCGQLGLNDEQNRAYPSQLKSMRTLGVRFVTCGDEYSVFLTNEGGVF 268

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                       G +  E IP  V  L  + I Q A G  H LA V   GR Y++G    
Sbjct: 269 TCGAGNYGQLGHGASNNEMIPRMVIELMGSTITQVACGNRHTLALVPSGGRVYSFGLGAS 328

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA---------PKLIVRQVAAGGTHSVVLTREGH 154
           GQ G          +++    V P   A           +++R++ +GG  S+V T    
Sbjct: 329 GQLGTRNTISQTLPKVVIGPWVSPNGSALMESSEGADKSVVIRKIFSGGDQSIVTTT--- 385

Query: 155 VWTWGQPWPPGDIKQISVPVRVQGL 179
              +    PP D++  +   ++  L
Sbjct: 386 --FYVDKVPPEDLRSYNPKSQILSL 408


>gi|320163091|gb|EFW39990.1| chromosome condensation regulator RCC1 [Capsaspora owczarzaki ATCC
           30864]
          Length = 1230

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 170/385 (44%), Gaps = 56/385 (14%)

Query: 6   SIIAWGSGEDGQLGIG-NNEEREWVCVVKALEPYK-------VRSVVAGSRNSLAICDD- 56
           S+ AWG+  DGQLG+   N+    V     LE +          ++  G  ++L + D  
Sbjct: 84  SVWAWGNPTDGQLGLRLTNDHTLAVPEPTELEAFSSVSMSTLASAIACGRAHTLFLVDGQ 143

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       G  K  + P +V+AL    I Q A G  H LA+   G+ +AWG N+  
Sbjct: 144 VYSCGSNDQGQLGHKKHRSKPERVDALEPYTITQIACGETHSLALTSNGQVFAWGDNKAS 203

Query: 105 QCGEEPERKD-----------------------DTGRILRRDIVIPQRCAPKLI---VRQ 138
           Q G  P                           D   +   D +   R    L    + Q
Sbjct: 204 QLGLTPSESSRQPSTRSSAPKTAAASIDDVDELDAATLAYMDFMTRPRLVRALTGHKIVQ 263

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHN 192
           +  G   S+VL+  G V+ WG          ++K + VP  V+ L    ++ +A G  H 
Sbjct: 264 IVCGANFSLVLSERGDVFAWGDNTSGQLCLRELKTVPVPTLVKELYGIPIRQLAAGGRHT 323

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL  +G +++WGNN++GQLG GDT P + P  ++ L       IA G  HS  LT+ G 
Sbjct: 324 LALTFNGQVYSWGNNQFGQLGVGDTAPHTIPSRLKTLEHQFCAHIACGEDHSVVLTETGG 383

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFG 311
           VY +G G  G+LG G     +++ P+ +  L G+   QV CG  H++    +   I++FG
Sbjct: 384 VYSFGAGGQGQLGHG--TLQNEINPRMIFELMGKSASQVLCGRRHTIVFFPKTNKIYAFG 441

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINI 336
            G +G+LG G  V   Q +  P+ +
Sbjct: 442 LGGNGQLGTGVGVEPQQHVLTPMLV 466



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 134/313 (42%), Gaps = 31/313 (9%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG  +  QLG+  +E           +P    S    +  S+   D+    
Sbjct: 188 LTSNGQVFAWGDNKASQLGLTPSESSR--------QPSTRSSAPKTAAASIDDVDELDAA 239

Query: 61  TENI------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
           T         P  V AL+  KIVQ   G    L + ++G  +AWG N  GQ      +  
Sbjct: 240 TLAYMDFMTRPRLVRALTGHKIVQIVCGANFSLVLSERGDVFAWGDNTSGQLCLRELKTV 299

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
               +++    IP        +RQ+AAGG H++ LT  G V++WG         GD    
Sbjct: 300 PVPTLVKELYGIP--------IRQLAAGGRHTLALTFNGQVYSWGNNQFGQLGVGDTAPH 351

Query: 171 SVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           ++P R++ LE      IA G  H++ L E G ++++G    GQLG G  Q    P  +  
Sbjct: 352 TIPSRLKTLEHQFCAHIACGEDHSVVLTETGGVYSFGAGGQGQLGHGTLQNEINPRMIFE 411

Query: 229 LSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGEHGRL--GFGDNDKSSKMVPQKVNLLAG 285
           L G +   +  G  H+        ++Y +G G +G+L  G G   +   + P  V +L  
Sbjct: 412 LMGKSASQVLCGRRHTIVFFPKTNKIYAFGLGGNGQLGTGVGVEPQQHVLTPMLVRVLDA 471

Query: 286 EDIVQVSCGGTHS 298
             I++++ G + S
Sbjct: 472 TPILRIATGASAS 484



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 107/259 (41%), Gaps = 61/259 (23%)

Query: 153 GHVWTWGQP--------WPPGDIKQISVPVRVQGLEQVKL------IAVGAFHNLALQED 198
           G VW WG P                +  P  ++    V +      IA G  H L L  D
Sbjct: 83  GSVWAWGNPTDGQLGLRLTNDHTLAVPEPTELEAFSSVSMSTLASAIACGRAHTLFLV-D 141

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G +++ G+N+ GQL  G  + RS+P  V  L   T+  IA G  HS ALT +G+V+ WG 
Sbjct: 142 GQVYSCGSNDQGQL--GHKKHRSKPERVDALEPYTITQIACGETHSLALTSNGQVFAWGD 199

Query: 259 GEHGRLGFGDNDKSSK--------------------------------MVPQKVNLLAGE 286
            +  +LG   ++ S +                                  P+ V  L G 
Sbjct: 200 NKASQLGLTPSESSRQPSTRSSAPKTAAASIDDVDELDAATLAYMDFMTRPRLVRALTGH 259

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            IVQ+ CG   S+ L+  G +F++G    G+L   R++ T       + +P       G+
Sbjct: 260 KIVQIVCGANFSLVLSERGDVFAWGDNTSGQLCL-RELKT-------VPVPTLVKELYGI 311

Query: 347 DRRWIAKLVACGGRHTLAI 365
             R +    A GGRHTLA+
Sbjct: 312 PIRQL----AAGGRHTLAL 326



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 14/159 (8%)

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIP----VQGLSGLTLVDIA---AGGWHSTALT 248
           Q  G++WAWGN   GQLG   T   +  +P    ++  S +++  +A   A G   T   
Sbjct: 80  QLAGSVWAWGNPTDGQLGLRLTNDHTLAVPEPTELEAFSSVSMSTLASAIACGRAHTLFL 139

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DG+VY  G  + G+LG     K  +  P++V+ L    I Q++CG THS+ALT +G +F
Sbjct: 140 VDGQVYSCGSNDQGQLG----HKKHRSKPERVDALEPYTITQIACGETHSLALTSNGQVF 195

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++G     +LG     ++ QP        AP+ A   +D
Sbjct: 196 AWGDNKASQLGLTPSESSRQP---STRSSAPKTAAASID 231


>gi|55832766|gb|AAV66896.1| truncated HERC6 [Homo sapiens]
          Length = 364

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 145/304 (47%), Gaps = 34/304 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIVE 367
           A V 
Sbjct: 301 AYVH 304



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 137/326 (42%), Gaps = 64/326 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L++ KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSN- 208

Query: 163 PPGDIK--------QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             G +         Q + P+ V  L+   V  I+ G  H   L +DG ++ +G+N  GQL
Sbjct: 209 SAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQL 268

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G   T  +  P  V+ + GL +  I  G +H+ A       Y    G+    G G +D S
Sbjct: 269 GYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVVSFGHGPSDTS 320

Query: 273 SKMVPQKVN-------LLAGEDIVQV 291
               P+ +        L++ ED V V
Sbjct: 321 KPTHPEALTENFDISCLISAEDFVDV 346



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 53/149 (35%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  K     P+K+  L    I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEF-KEISFTPKKIMTLNDIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            HS+AL++D  +FS+G+  HG+LG G++ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEF 166



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 54/232 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  -------------KTENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           N+P Q N      AL N  +V  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTR-EG 153
           N  GQ G  P                P++  P+L+      V Q+  G  H++      G
Sbjct: 263 NRSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTG 307

Query: 154 HVWTWG-------QPWPPGDIKQ---ISVPVRVQGL--EQVKLIAVGAFHNL 193
            V ++G       +P  P  + +   IS  +  +     QVK I  G + N 
Sbjct: 308 QVVSFGHGPSDTSKPTHPEALTENFDISCLISAEDFVDVQVKHIFAGTYANF 359


>gi|408500851|ref|YP_006864770.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465675|gb|AFU71204.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1070

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 158/308 (51%), Gaps = 40/308 (12%)

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LAV   G+AYAWG N YGQ G+       T  I+R+   +P          QV+AG  H
Sbjct: 572 SLAVGSDGKAYAWGDNTYGQLGDATTNSRSTPNIVRKPTGVPT----DFTYVQVSAGKWH 627

Query: 146 SVVLTREGHVWTWG--QPWPPGDIKQI--SVPVRV----------QGLEQVKLIAVGAFH 191
           S+ L  +G+V+ WG  Q    G+  +   SVPVRV          +GL+ ++ ++ G  H
Sbjct: 628 SLALGSDGYVYAWGSNQHGQLGNNTKTNSSVPVRVRDPANPTDPNKGLKAIQ-VSAGDEH 686

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI-------PVQGLSGLTLVDIAAGGWHS 244
           +LAL  +G ++AWG N+ G+LG   T   S P+       P     GL  V ++AG  HS
Sbjct: 687 SLALDSNGYVYAWGWNDNGRLGNNSTTDSSVPVRVRDPASPTDPSKGLKAVQVSAGWHHS 746

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-------GEDIVQVSCGGTH 297
            A+  DG  Y WG   +G+L  G++ K+S   P +V   A       G   VQVS G +H
Sbjct: 747 LAVGSDGYTYAWGLNNYGQL--GNSSKNSSSFPVRVRDFASPNDANKGLKAVQVSAGYSH 804

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           S+A+  DG+ +++G  ++G+LG    V +  P+ V  +  +P++A  G+     A  +  
Sbjct: 805 SLAVGSDGYTYAWGLNNYGQLGNSNTVDSTVPVRV-RDPTSPKDASKGLK----ATAINA 859

Query: 358 GGRHTLAI 365
           GG H+LA+
Sbjct: 860 GGEHSLAV 867



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 170/386 (44%), Gaps = 63/386 (16%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDG------ 57
            AWG    GQLG      R    +V+        +    V AG  +SLA+  DG      
Sbjct: 582 YAWGDNTYGQLGDATTNSRSTPNIVRKPTGVPTDFTYVQVSAGKWHSLALGSDGYVYAWG 641

Query: 58  ---------KTKTEN-IPSQVNALSNT-------KIVQAAIGGWHCLAVDDQGRAYAWGG 100
                     TKT + +P +V   +N        K +Q + G  H LA+D  G  YAWG 
Sbjct: 642 SNQHGQLGNNTKTNSSVPVRVRDPANPTDPNKGLKAIQVSAGDEHSLALDSNGYVYAWGW 701

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
           N+ G+ G      D +  +  RD   P   +  L   QV+AG  HS+ +  +G+ + WG 
Sbjct: 702 NDNGRLGNN-STTDSSVPVRVRDPASPTDPSKGLKAVQVSAGWHHSLAVGSDGYTYAWGL 760

Query: 161 PWPPGDIKQI--------SVPVRV----------QGLEQVKLIAVGAFHNLALQEDGALW 202
                +  Q+        S PVRV          +GL+ V+ ++ G  H+LA+  DG  +
Sbjct: 761 ----NNYGQLGNSSKNSSSFPVRVRDFASPNDANKGLKAVQ-VSAGYSHSLAVGSDGYTY 815

Query: 203 AWGNNEYGQLGTGDTQPRSQPI-------PVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           AWG N YGQLG  +T   + P+       P     GL    I AGG HS A+ ++G  Y 
Sbjct: 816 AWGLNNYGQLGNSNTVDSTVPVRVRDPTSPKDASKGLKATAINAGGEHSLAVGNNGYAYA 875

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQK-----VNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           WG   + +LG G    SS  VP +      +   G    + S G  HS+A+  +G+ +++
Sbjct: 876 WGWNLYRQLGDGTTSNSSVPVPVRDPTSPADASKGLQATRFSVGDHHSLAVGSNGYAYAW 935

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINI 336
           G   +G+LG G    +  P+ V  N+
Sbjct: 936 GENSYGQLGDGTTDDSNVPVSVLFNL 961



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 115/266 (43%), Gaps = 50/266 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP---------YKVRSVVAGSRNSLAICDDG 57
           + AWG  ++G+LG  NN   +    V+  +P          K   V AG  +SLA+  DG
Sbjct: 696 VYAWGWNDNGRLG--NNSTTDSSVPVRVRDPASPTDPSKGLKAVQVSAGWHHSLAVGSDG 753

Query: 58  KT----------------KTENIPSQVNALSNT-------KIVQAAIGGWHCLAVDDQGR 94
            T                 + + P +V   ++        K VQ + G  H LAV   G 
Sbjct: 754 YTYAWGLNNYGQLGNSSKNSSSFPVRVRDFASPNDANKGLKAVQVSAGYSHSLAVGSDGY 813

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            YAWG N YGQ G      D T  +  RD   P+  +  L    + AGG HS+ +   G+
Sbjct: 814 TYAWGLNNYGQLGNS-NTVDSTVPVRVRDPTSPKDASKGLKATAINAGGEHSLAVGNNGY 872

Query: 155 VWTWG----QPWPPGDIKQISVPVRV----------QGLEQVKLIAVGAFHNLALQEDGA 200
            + WG    +    G     SVPV V          +GL+  +  +VG  H+LA+  +G 
Sbjct: 873 AYAWGWNLYRQLGDGTTSNSSVPVPVRDPTSPADASKGLQATRF-SVGDHHSLAVGSNGY 931

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPV 226
            +AWG N YGQLG G T   + P+ V
Sbjct: 932 AYAWGENSYGQLGDGTTDDSNVPVSV 957


>gi|444916978|ref|ZP_21237086.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444711624|gb|ELW52563.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 734

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/266 (35%), Positives = 141/266 (53%), Gaps = 20/266 (7%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           +   + A+G +H + V   G  +AWG N  GQ G+        G ++  D   P R    
Sbjct: 36  SSAARLALGQYHSVGVHSDGTVWAWGFNRQGQLGD--------GTLV--DSPTPVRVTNL 85

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGA 189
             V  VA+G  HS+ L+ +G VW WG         G      VPVRVQ L  V  +  G 
Sbjct: 86  SGVVSVASGDYHSLGLSSDGTVWAWGDNTAGQLGNGTASASPVPVRVQNLSGVVSLGSGF 145

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H LAL+ DG +WAWG+N Y QLG       + P+ V GLSG  ++ + AGG++S AL  
Sbjct: 146 SHGLALRSDGTVWAWGDNRYNQLGNVGATRSNLPVQVPGLSG--VIAVVAGGYYSLALRS 203

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG   +G+L  GD   + + VP +V  L+G  ++ +S G  H+VAL  DG +++
Sbjct: 204 DGTVWAWGDNRYGQL--GDGTTTQRAVPVQVLNLSG--VMNLSAGSFHTVALRSDGSVWA 259

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPIN 335
           +G   +G+LG G   +  QP++V ++
Sbjct: 260 WGFNAYGQLGDGTTTSRFQPVQVGLS 285



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 156/339 (46%), Gaps = 42/339 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  ++ AWG    GQLG G   +      V+      V SV +G  +SL +  DG     
Sbjct: 53  SDGTVWAWGFNRQGQLGDGTLVDSP--TPVRVTNLSGVVSVASGDYHSLGLSSDGTVWAW 110

Query: 60  -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                            +P +V  LS   +V    G  H LA+   G  +AWG N Y Q 
Sbjct: 111 GDNTAGQLGNGTASASPVPVRVQNLSG--VVSLGSGFSHGLALRSDGTVWAWGDNRYNQL 168

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G     + +          +P +      V  V AGG +S+ L  +G VW WG       
Sbjct: 169 GNVGATRSN----------LPVQVPGLSGVIAVVAGGYYSLALRSDGTVWAWGDNRYGQL 218

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G   Q +VPV+V  L  V  ++ G+FH +AL+ DG++WAWG N YGQLG G T  R Q
Sbjct: 219 GDGTTTQRAVPVQVLNLSGVMNLSAGSFHTVALRSDGSVWAWGFNAYGQLGDGTTTSRFQ 278

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V     LTLV   AG +HS A+  DG V+ WG   + +L  GD   +S  VP +  L
Sbjct: 279 PVQVGLSDVLTLV---AGNYHSLAVRSDGAVWAWGDNRYRQL--GDGTTTSSRVPVQSGL 333

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             G  +V    G  HS+ L  DG ++S+G    G+LG G
Sbjct: 334 SGGVTLV---AGYKHSLVLRSDGTVWSWGDNVFGQLGDG 369



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 23/280 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG       P +V  LS   +V  A G +H L +   G  +AWG N  GQ G        
Sbjct: 70  DGTLVDSPTPVRVTNLSG--VVSVASGDYHSLGLSSDGTVWAWGDNTAGQLGNGTASASP 127

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDI--KQIS 171
                     +P R      V  + +G +H + L  +G VW WG  +    G++   + +
Sbjct: 128 ----------VPVRVQNLSGVVSLGSGFSHGLALRSDGTVWAWGDNRYNQLGNVGATRSN 177

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +PV+V GL  V  +  G +++LAL+ DG +WAWG+N YGQLG G T  R+ P+ V  LSG
Sbjct: 178 LPVQVPGLSGVIAVVAGGYYSLALRSDGTVWAWGDNRYGQLGDGTTTQRAVPVQVLNLSG 237

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             +++++AG +H+ AL  DG V+ WG   +G+L  GD   +S+  P +V L    D++ +
Sbjct: 238 --VMNLSAGSFHTVALRSDGSVWAWGFNAYGQL--GDGTTTSRFQPVQVGL---SDVLTL 290

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
             G  HS+A+  DG ++++G   + +LG G   ++  P++
Sbjct: 291 VAGNYHSLAVRSDGAVWAWGDNRYRQLGDGTTTSSRVPVQ 330



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 166/353 (47%), Gaps = 42/353 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ AWG    GQLG G   +     V   +      +V AG +++L +       
Sbjct: 400 LDSNGAVWAWGDNYSGQLGNGTGLDS---LVAAPVGLGGSVAVSAGFKHTLVLKADTTVW 456

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG       P QV  LS    V A  G +H LA+   G  +AWG N YG
Sbjct: 457 AWGVNEHGQLGDGTLTDRTRPVQVAGLSGVSAVSA--GSYHSLALRSNGTVWAWGFNRYG 514

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+              D + P + A    V  VAAG +HS+ L  +G VW WG  +  
Sbjct: 515 QLGDGTNT----------DRLQPVQVAGLSGVVAVAAGDSHSLALRSDGTVWAWGYNFDG 564

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
               G      +PV+V GL  V  ++ G +H+LAL+ DG +W WG N  GQLG G T   
Sbjct: 565 QIGDGSYSWRFLPVQVVGLSGVVSVSAGGYHSLALRSDGTVWTWGYNGSGQLGDGSTAIN 624

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           +  P+ V GLSG+  V + +G +HS  L  DG V+ WG    G+LG  D    ++  P +
Sbjct: 625 KPAPVQVAGLSGV--VSLGSGNYHSLGLRSDGTVWAWGFNFDGQLG--DGSLLNRSTPVR 680

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           V+ L+G  +V V  G  HS+A   DG ++++G    G+LG G +  T  P+ V
Sbjct: 681 VSGLSG--VVSVVAGDYHSLARRSDGTVWAWGYNGEGQLGDGTRNDTLVPVWV 731



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 177/386 (45%), Gaps = 58/386 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           ++S  ++ AWG    GQLG G          V+ L    V S+ +G  + LA+  DG   
Sbjct: 101 LSSDGTVWAWGDNTAGQLGNGTASASPVPVRVQNLS--GVVSLGSGFSHGLALRSDGTVW 158

Query: 60  ---------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                             N+P QV  LS   ++    GG++ LA+   G  +AWG N YG
Sbjct: 159 AWGDNRYNQLGNVGATRSNLPVQVPGLSG--VIAVVAGGYYSLALRSDGTVWAWGDNRYG 216

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G+        G   +R   +P +      V  ++AG  H+V L  +G VW WG     
Sbjct: 217 QLGD--------GTTTQR--AVPVQVLNLSGVMNLSAGSFHTVALRSDGSVWAWGFN-AY 265

Query: 165 GDIKQISVPVRVQ----GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
           G +   +   R Q    GL  V  +  G +H+LA++ DGA+WAWG+N Y QLG G T   
Sbjct: 266 GQLGDGTTTSRFQPVQVGLSDVLTLVAGNYHSLAVRSDGAVWAWGDNRYRQLGDGTTT-- 323

Query: 221 SQPIPVQ-GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           S  +PVQ GLSG   V + AG  HS  L  DG V+ WG    G+LG G  +  S  V  K
Sbjct: 324 SSRVPVQSGLSG--GVTLVAGYKHSLVLRSDGTVWSWGDNVFGQLGDGTFNPRSSAV--K 379

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V+ L+      VS G  HSV L  +G ++++G    G+LG G  + +         + AP
Sbjct: 380 VSWLS-LGRADVSSGQLHSVVLDSNGAVWAWGDNYSGQLGNGTGLDS--------LVAAP 430

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
              G  V        V+ G +HTL +
Sbjct: 431 VGLGGSV-------AVSAGFKHTLVL 449



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 167/356 (46%), Gaps = 48/356 (13%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  ++ AWG     QLG G       V V   L      ++VAG ++SL +  DG     
Sbjct: 302 SDGAVWAWGDNRYRQLGDGTTTSSR-VPVQSGLS--GGVTLVAGYKHSLVLRSDGTVWSW 358

Query: 60  ----------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                      T N  S    +S   + +A +  G  H + +D  G  +AWG N  GQ G
Sbjct: 359 GDNVFGQLGDGTFNPRSSAVKVSWLSLGRADVSSGQLHSVVLDSNGAVWAWGDNYSGQLG 418

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                    G  L   +  P      +    V+AG  H++VL  +  VW WG        
Sbjct: 419 N--------GTGLDSLVAAPVGLGGSV---AVSAGFKHTLVLKADTTVWAWGVNEHGQLG 467

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G +   + PV+V GL  V  ++ G++H+LAL+ +G +WAWG N YGQLG G    R QP
Sbjct: 468 DGTLTDRTRPVQVAGLSGVSAVSAGSYHSLALRSNGTVWAWGFNRYGQLGDGTNTDRLQP 527

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V GLSG  +V +AAG  HS AL  DG V+ WG    G++  GD   S + +P  V ++
Sbjct: 528 VQVAGLSG--VVAVAAGDSHSLALRSDGTVWAWGYNFDGQI--GDGSYSWRFLP--VQVV 581

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
               +V VS GG HS+AL  DG ++++G    G+LG G            IN PAP
Sbjct: 582 GLSGVVSVSAGGYHSLALRSDGTVWTWGYNGSGQLGDG---------STAINKPAP 628



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 163/348 (46%), Gaps = 31/348 (8%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEERE------WVCVVKA-LEPYKVRSVVAGSRNSLAI 53
           + S  ++ +WG    GQLG G    R       W+ + +A +   ++ SVV  S  ++  
Sbjct: 349 LRSDGTVWSWGDNVFGQLGDGTFNPRSSAVKVSWLSLGRADVSSGQLHSVVLDSNGAVWA 408

Query: 54  CDDGKTKTENIPSQVNALSNTKI-----VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
             D  +      + +++L    +     V  + G  H L +      +AWG NE+GQ G+
Sbjct: 409 WGDNYSGQLGNGTGLDSLVAAPVGLGGSVAVSAGFKHTLVLKADTTVWAWGVNEHGQLGD 468

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGD 166
                         D   P + A    V  V+AG  HS+ L   G VW WG  +    GD
Sbjct: 469 GT----------LTDRTRPVQVAGLSGVSAVSAGSYHSLALRSNGTVWAWGFNRYGQLGD 518

Query: 167 IKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
                   PV+V GL  V  +A G  H+LAL+ DG +WAWG N  GQ+G G    R   +
Sbjct: 519 GTNTDRLQPVQVAGLSGVVAVAAGDSHSLALRSDGTVWAWGYNFDGQIGDGSYSWRF--L 576

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           PVQ +    +V ++AGG+HS AL  DG V+ WG    G+LG G     +K  P +V  L+
Sbjct: 577 PVQVVGLSGVVSVSAGGYHSLALRSDGTVWTWGYNGSGQLGDGST-AINKPAPVQVAGLS 635

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G  +V +  G  HS+ L  DG ++++G    G+LG G  +    P+ V
Sbjct: 636 G--VVSLGSGNYHSLGLRSDGTVWAWGFNFDGQLGDGSLLNRSTPVRV 681



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 24/232 (10%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
           ++A G  HSV +  +G VW WG         G +     PVRV  L  V  +A G +H+L
Sbjct: 40  RLALGQYHSVGVHSDGTVWAWGFNRQGQLGDGTLVDSPTPVRVTNLSGVVSVASGDYHSL 99

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            L  DG +WAWG+N  GQLG G       P+ VQ LSG  +V + +G  H  AL  DG V
Sbjct: 100 GLSSDGTVWAWGDNTAGQLGNGTASASPVPVRVQNLSG--VVSLGSGFSHGLALRSDGTV 157

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG   + +LG     +S+  +P +V  L+G  ++ V  GG +S+AL  DG ++++G  
Sbjct: 158 WAWGDNRYNQLGNVGATRSN--LPVQVPGLSG--VIAVVAGGYYSLALRSDGTVWAWGDN 213

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +G+LG G       P++V +N+    N             ++ G  HT+A+
Sbjct: 214 RYGQLGDGTTTQRAVPVQV-LNLSGVMN-------------LSAGSFHTVAL 251



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 108/247 (43%), Gaps = 29/247 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG    GQLG G N +R     V  L    V +V AG  +SLA+  DG   
Sbjct: 499 LRSNGTVWAWGFNRYGQLGDGTNTDRLQPVQVAGLS--GVVAVAAGDSHSLALRSDGTVW 556

Query: 61  T--ENIPSQVNALSNT------------KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
               N   Q+   S +             +V  + GG+H LA+   G  + WG N  GQ 
Sbjct: 557 AWGYNFDGQIGDGSYSWRFLPVQVVGLSGVVSVSAGGYHSLALRSDGTVWTWGYNGSGQL 616

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--- 163
           G+     +            P + A    V  + +G  HS+ L  +G VW WG  +    
Sbjct: 617 GDGSTAINKP---------APVQVAGLSGVVSLGSGNYHSLGLRSDGTVWAWGFNFDGQL 667

Query: 164 -PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G +   S PVRV GL  V  +  G +H+LA + DG +WAWG N  GQLG G       
Sbjct: 668 GDGSLLNRSTPVRVSGLSGVVSVVAGDYHSLARRSDGTVWAWGYNGEGQLGDGTRNDTLV 727

Query: 223 PIPVQGL 229
           P+ V G+
Sbjct: 728 PVWVLGI 734



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 6/156 (3%)

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           G      +A+G +H++ +  DG +WAWG N  GQLG G       P+ V  LSG  +V +
Sbjct: 34  GRSSAARLALGQYHSVGVHSDGTVWAWGFNRQGQLGDGTLVDSPTPVRVTNLSG--VVSV 91

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A+G +HS  L+ DG V+ WG    G+LG G    S+  VP +V  L+G  +V +  G +H
Sbjct: 92  ASGDYHSLGLSSDGTVWAWGDNTAGQLGNG--TASASPVPVRVQNLSG--VVSLGSGFSH 147

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            +AL  DG ++++G   + +LG      +  P++VP
Sbjct: 148 GLALRSDGTVWAWGDNRYNQLGNVGATRSNLPVQVP 183


>gi|270002050|gb|EEZ98497.1| hypothetical protein TcasGA2_TC000997 [Tribolium castaneum]
          Length = 1042

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 163/335 (48%), Gaps = 47/335 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA---GSRNSLAICDDGKTKT-- 61
           +  WGS   G+LG+G  EE E V   KAL+ ++ +SV+    G+ ++L +  DGK  +  
Sbjct: 1   MFGWGSTIHGELGLGGIEE-EHVFTPKALDWFEAKSVMKAALGANHTLFLTKDGKVYSCG 59

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P  V+ L    I+  A G  H LA+   G  ++WG + YGQ G +
Sbjct: 60  SNDYGQLGHDQPRKRPQLVSGLDAYSIINVACGEMHSLALSRWGEVFSWGSDNYGQLGHQ 119

Query: 110 PERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
                  G  L+   ++P+  +   K  V Q+AAG  HSV LT  G ++ WG      D 
Sbjct: 120 ------LGGTLQ---IVPKLIKSLAKYQVVQIAAGQRHSVALTNAGEIFVWGA----NDF 166

Query: 168 KQI---------SVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            Q+         S P  V  L  +   LIA GA H  A+ + GA++ WG N  GQLG  D
Sbjct: 167 GQLGLGTITPYESTPTTVCSLSGIPFALIACGANHTFAVSKSGAVFGWGKNINGQLGLND 226

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T  +  P  ++ L    +  I+ G   ST LT DG V+  G G +G+LG G    S++++
Sbjct: 227 TVSKKFPTQLRTLRNSRVRFISCGDEFSTFLTLDGGVFSCGAGMYGQLGHGGT--SNEIL 284

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSF 310
           P++V  L G  I Q+SCG  HS+A     G ++S+
Sbjct: 285 PRQVLELMGSTITQISCGRQHSLAFVPSRGRVYSY 319



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 14/180 (7%)

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A+GA H L L +DG +++ G+N+YGQLG    QPR +P  V GL   +++++A G  HS 
Sbjct: 40  ALGANHTLFLTKDGKVYSCGSNDYGQLG--HDQPRKRPQLVSGLDAYSIINVACGEMHSL 97

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           AL+  GEV+ WG   +G+LG      + ++VP+ +  LA   +VQ++ G  HSVALT  G
Sbjct: 98  ALSRWGEVFSWGSDNYGQLG-HQLGGTLQIVPKLIKSLAKYQVVQIAAGQRHSVALTNAG 156

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            IF +G  D G+LG G    T  P E   + P    +  G+       L+ACG  HT A+
Sbjct: 157 EIFVWGANDFGQLGLG----TITPYE---STPTTVCSLSGIP----FALIACGANHTFAV 205



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++GWG   HG LG G  ++     P+ ++    + +++ + G  H++ LT+DG ++S G 
Sbjct: 1   MFGWGSTIHGELGLGGIEEEHVFTPKALDWFEAKSVMKAALGANHTLFLTKDGKVYSCGS 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            D+G+LG+       QP + P           G+D   I   VACG  H+LA+  W
Sbjct: 61  NDYGQLGHD------QPRKRP-------QLVSGLDAYSIIN-VACGEMHSLALSRW 102



 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 24/171 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           ++  WG   +GQLG+ +   +++   ++ L   +VR +  G   S  +  D         
Sbjct: 210 AVFGWGKNINGQLGLNDTVSKKFPTQLRTLRNSRVRFISCGDEFSTFLTLDGGVFSCGAG 269

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                  G T  E +P QV  L  + I Q + G  H LA V  +GR Y++G    GQ G 
Sbjct: 270 MYGQLGHGGTSNEILPRQVLELMGSTITQISCGRQHSLAFVPSRGRVYSYGLGGAGQLGL 329

Query: 109 EPERKDDTGRILRRD-------IVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
                  T +++           V+P       ++ ++ AGG H  V   E
Sbjct: 330 RKPSNASTPQVVLGPWVSPSGVPVVPNNAPVNTVINRIYAGGDHCFVSVTE 380


>gi|114321834|ref|YP_743517.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114228228|gb|ABI58027.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 821

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 161/348 (46%), Gaps = 41/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           S+  WG    GQLG+G+ ++R     V     +   SV  G  ++LA+  DG        
Sbjct: 493 SLWGWGRNHSGQLGLGDTDDRHAPVQVGGDSDWTSLSV--GREHTLAVKADGTLWGWGQN 550

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P +V + S+   V A  G  + LAV D G  +AWG N +GQ G  
Sbjct: 551 YNGQLGLGDTDDRKTPERVGSDSDWATVSAGTG--YTLAVKDDGTLWAWGRNSHGQLG-- 606

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    RD   P + A       V+AG  H++ +  +G +W WG+        G
Sbjct: 607 ------LGDTNNRDA--PVQVASDNDWAAVSAGSRHTLAVKNDGTLWAWGRNSDGQLGLG 658

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           D     VP +V        ++ G+ H LA++ DG LWAWG N  GQLG GDT  R  P  
Sbjct: 659 DTDNRDVPEQVGSDTDWAAVSTGSGHTLAVKTDGTLWAWGRNSDGQLGLGDTDERHAPEQ 718

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V G S    V   AG  H+ A+ +DG ++GWG   +G+LG GD D   +  P +V   + 
Sbjct: 719 VGGDSDWAAV--TAGWQHTLAIKNDGTLWGWGLNLYGQLGLGDTD--GRHAPMQVG--SD 772

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            D   V+ G  H++A+  DG + ++GR   G+LG  R     QP EVP
Sbjct: 773 SDWATVAAGRYHTLAVKDDGTLRAWGRNRFGQLGQ-RTYRFDQPQEVP 819



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 163/352 (46%), Gaps = 40/352 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           M +  ++ AWG    GQLG+G+ E+R+    V +   +   +V AG   +LA+ DDG   
Sbjct: 138 MKADGTLWAWGQNNVGQLGLGDTEKRDTPAQVGSDTDWA--AVSAGGAYTLAVKDDGTLW 195

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T   + P QV   S++  V  + G  H LA+   G  +AWG N +G
Sbjct: 196 AWGENYFGQLGLGDTDDRHAPEQVG--SDSDWVAVSAGRHHTLALKADGTLWAWGRNYFG 253

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G         G    R+   P++         V  G  HS+ +  +G +W+WGQ    
Sbjct: 254 QLG--------LGGTTNRNA--PEQVGSHSDWAGVIGGDRHSLAVREDGTLWSWGQNNVG 303

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               GD  +   P +V        ++ G  H LA++ DG LWAWG N +GQLG GDT  R
Sbjct: 304 QLGLGDTVERRRPEQVGNDSDWATVSAGLLHTLAVKNDGTLWAWGGNGFGQLGLGDTDNR 363

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V   S      + AG  +S A+ +DG ++ WG  + G LG GD D   +  P++V
Sbjct: 364 DAPVQVG--SDNDWAALNAGQRYSLAVKNDGSLWSWGWNDFGELGLGDTDD--RHAPEQV 419

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
               G +   V+ G  H++ +  DG + ++GR D G LG G  V    P++ 
Sbjct: 420 G--GGMEWAAVTAGMYHTLGVKADGTLRAWGRNDFGELGLGVMVYITSPLQT 469



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 171/378 (45%), Gaps = 50/378 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN-- 63
           S+ +WG  + G+LG+G+ ++R     V     +   +V AG  ++L +  DG  +     
Sbjct: 393 SLWSWGWNDFGELGLGDTDDRHAPEQVGGGMEWA--AVTAGMYHTLGVKADGTLRAWGRN 450

Query: 64  ------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                       I S +  ++      A+ G +   AV   G  + WG N  GQ G    
Sbjct: 451 DFGELGLGVMVYITSPLQTVTEADWAAASAGQYQTQAVKADGSLWGWGRNHSGQLG---- 506

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDI 167
              DT      D   P +         ++ G  H++ +  +G +W WGQ +      GD 
Sbjct: 507 -LGDT-----DDRHAPVQVGGDSDWTSLSVGREHTLAVKADGTLWGWGQNYNGQLGLGDT 560

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                P RV        ++ G  + LA+++DG LWAWG N +GQLG GDT  R  P+ V 
Sbjct: 561 DDRKTPERVGSDSDWATVSAGTGYTLAVKDDGTLWAWGRNSHGQLGLGDTNNRDAPVQVA 620

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
             S      ++AG  H+ A+ +DG ++ WGR   G+LG GD D  ++ VP++V   +  D
Sbjct: 621 --SDNDWAAVSAGSRHTLAVKNDGTLWAWGRNSDGQLGLGDTD--NRDVPEQVG--SDTD 674

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
              VS G  H++A+  DG ++++GR   G+LG G       P +V            G D
Sbjct: 675 WAAVSTGSGHTLAVKTDGTLWAWGRNSDGQLGLGDTDERHAPEQV------------GGD 722

Query: 348 RRWIAKLVACGGRHTLAI 365
             W A  V  G +HTLAI
Sbjct: 723 SDWAA--VTAGWQHTLAI 738



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 134/290 (46%), Gaps = 34/290 (11%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A GG H LA+   G  +AWG N  GQ G     K DT          P +         V
Sbjct: 129 AAGGVHTLAMKADGTLWAWGQNNVGQLGLGDTEKRDT----------PAQVGSDTDWAAV 178

Query: 140 AAGGTHSVVLTREGHVWTWGQPW----PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +AGG +++ +  +G +W WG+ +      GD      P +V        ++ G  H LAL
Sbjct: 179 SAGGAYTLAVKDDGTLWAWGENYFGQLGLGDTDDRHAPEQVGSDSDWVAVSAGRHHTLAL 238

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + DG LWAWG N +GQLG G T  R+ P  V   S      +  G  HS A+ +DG ++ 
Sbjct: 239 KADGTLWAWGRNYFGQLGLGGTTNRNAPEQVGSHS--DWAGVIGGDRHSLAVREDGTLWS 296

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG+   G+LG GD  +  +  P++V      D   VS G  H++A+  DG ++++G    
Sbjct: 297 WGQNNVGQLGLGDTVERRR--PEQVG--NDSDWATVSAGLLHTLAVKNDGTLWAWGGNGF 352

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG G       P++V            G D  W A  +  G R++LA+
Sbjct: 353 GQLGLGDTDNRDAPVQV------------GSDNDWAA--LNAGQRYSLAV 388



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 24/231 (10%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           +AAGG H++ +  +G +W WGQ        GD ++   P +V        ++ G  + LA
Sbjct: 128 LAAGGVHTLAMKADGTLWAWGQNNVGQLGLGDTEKRDTPAQVGSDTDWAAVSAGGAYTLA 187

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           +++DG LWAWG N +GQLG GDT  R  P  V   S    V ++AG  H+ AL  DG ++
Sbjct: 188 VKDDGTLWAWGENYFGQLGLGDTDDRHAPEQVG--SDSDWVAVSAGRHHTLALKADGTLW 245

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WGR   G+LG G    +++  P++V   +  D   V  G  HS+A+  DG ++S+G+ +
Sbjct: 246 AWGRNYFGQLGLG--GTTNRNAPEQVG--SHSDWAGVIGGDRHSLAVREDGTLWSWGQNN 301

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+LG G  V   +P +V            G D  W    V+ G  HTLA+
Sbjct: 302 VGQLGLGDTVERRRPEQV------------GNDSDWAT--VSAGLLHTLAV 338



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 95/184 (51%), Gaps = 20/184 (10%)

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           ++A G  H LA++ DG LWAWG N  GQLG GDT+ R  P  V   S      ++AGG +
Sbjct: 127 VLAAGGVHTLAMKADGTLWAWGQNNVGQLGLGDTEKRDTPAQVG--SDTDWAAVSAGGAY 184

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           + A+ DDG ++ WG    G+LG GD D   +  P++V   +  D V VS G  H++AL  
Sbjct: 185 TLAVKDDGTLWAWGENYFGQLGLGDTDD--RHAPEQVG--SDSDWVAVSAGRHHTLALKA 240

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++++GR   G+LG G       P +V            G    W    V  G RH+L
Sbjct: 241 DGTLWAWGRNYFGQLGLGGTTNRNAPEQV------------GSHSDWAG--VIGGDRHSL 286

Query: 364 AIVE 367
           A+ E
Sbjct: 287 AVRE 290


>gi|426344974|ref|XP_004039178.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Gorilla
           gorilla gorilla]
          Length = 982

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 146/303 (48%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGTHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N  +    P  +  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPAQSNKPLSIGALKNLGVVYISCGDEHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNCSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 136/321 (42%), Gaps = 54/321 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L+  KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
            E               PQR      + + QVAAGGTHS  L+  G  + WG     G +
Sbjct: 164 KEFPSQAS---------PQRVRSLEGIPLAQVAAGGTHSFALSLCGTSFGWGSN-SAGQL 213

Query: 168 --------KQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                    Q + P+ +  L+   V  I+ G  H   L +DG ++ +G+N  GQLG   T
Sbjct: 214 ALSGRNVPAQSNKPLSIGALKNLGVVYISCGDEHTAVLTQDGKVFTFGDNCSGQLGYSPT 273

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             +  P  V+ + GL +  I  G +H+ A       Y    G+    G G +D S    P
Sbjct: 274 PEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVVSFGHGPSDTSKPTHP 325

Query: 278 QKVN-------LLAGEDIVQV 291
           + +        L++ ED+V V
Sbjct: 326 EALTENFDISCLISAEDLVDV 346



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGTHSFAL 196



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 54/233 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGTHSFALSLCGTS 202

Query: 60  -------------KTENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           N+P+Q N      AL N  +V  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSAGQLALSGRNVPAQSNKPLSIGALKNLGVVYISCGDEHTAVLTQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTR-EG 153
           N  GQ G  P                P++  P+L+      V Q+  G  H++      G
Sbjct: 263 NCSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGSYHTLAYVHTTG 307

Query: 154 HVWTWG-------QPWPPGDIKQ---ISVPVRVQGL--EQVKLIAVGAFHNLA 194
            V ++G       +P  P  + +   IS  +  + L   QVK I  G + N  
Sbjct: 308 QVVSFGHGPSDTSKPTHPEALTENFDISCLISAEDLVDVQVKHIFAGTYANFV 360


>gi|270002031|gb|EEZ98478.1| hypothetical protein TcasGA2_TC000971 [Tribolium castaneum]
          Length = 4191

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 185/396 (46%), Gaps = 59/396 (14%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           + +  WGS    QL  GN E+   +  VK+    +V+ V AG   + AI  DG       
Sbjct: 348 SDVYVWGSNSSHQLAEGNQEK--ILMPVKSKMFTQVQQVEAGQYCTFAIHWDGSVSACGK 405

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQCG 107
                    ++  +++P ++      K + ++ G   H LA+ + G  Y+WG  +YG+ G
Sbjct: 406 GSYGRLGLGESSNQSLPKRILLDCVVKKLSSSKGSDGHTLALAETGVVYSWGDGDYGKLG 465

Query: 108 -------EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
                  ++PER   TG  L + I            + + AG  HS  +T +G ++TWG+
Sbjct: 466 HGNCATHKQPERI--TGPFLGKTI------------KYIHAGYRHSAAVTDDGKLYTWGE 511

Query: 161 ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTG 215
                   GD     VP +V GL +V  +A G+ H L + +DG  +W++G+ E+G+LGTG
Sbjct: 512 GDHGRLGHGDSNARYVPTQVAGLAEVGSVACGSSHTLVVSKDGKTVWSFGSGEHGKLGTG 571

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           +     +P  V+ L GLT+  + AG W S ALT  GEVY WG G    LG G  D    +
Sbjct: 572 ELGKVYRPQVVEALQGLTIQKVCAGTWFSMALTTAGEVYTWGSG--AILGKGSADAIVNL 629

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            P  V  LA   IV +S G  H +ALT +  +F++G    G+ G G   +       PI 
Sbjct: 630 -PMYVEDLAQYRIVDISAGDNHCLALTDEHEVFAWGTNSMGQCGQGHTCS-------PIT 681

Query: 336 IPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
            P      +GV  R I    + G  H++A     TE
Sbjct: 682 RPLKVIGLEGVSIRQI----SAGTSHSMAWTSMSTE 713



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 135/254 (53%), Gaps = 25/254 (9%)

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           V ++   Y WG N   Q  E  + K          I++P +      V+QV AG   +  
Sbjct: 344 VYEKSDVYVWGSNSSHQLAEGNQEK----------ILMPVKSKMFTQVQQVEAGQYCTFA 393

Query: 149 LTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGA---FHNLALQEDGAL 201
           +  +G V   G+        G+    S+P R+     VK ++       H LAL E G +
Sbjct: 394 IHWDGSVSACGKGSYGRLGLGESSNQSLPKRILLDCVVKKLSSSKGSDGHTLALAETGVV 453

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++WG+ +YG+LG G+     QP  + G   G T+  I AG  HS A+TDDG++Y WG G+
Sbjct: 454 YSWGDGDYGKLGHGNCATHKQPERITGPFLGKTIKYIHAGYRHSAAVTDDGKLYTWGEGD 513

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLG 319
           HGRLG GD++  ++ VP +V  LA  ++  V+CG +H++ +++DG  ++SFG G+HG+LG
Sbjct: 514 HGRLGHGDSN--ARYVPTQVAGLA--EVGSVACGSSHTLVVSKDGKTVWSFGSGEHGKLG 569

Query: 320 YGR--KVTTGQPME 331
            G   KV   Q +E
Sbjct: 570 TGELGKVYRPQVVE 583



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 23/249 (9%)

Query: 94   RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
            +AY WG + +GQ  E           L     +P +     I R++  G   + V+  +G
Sbjct: 3328 KAYMWGSDRHGQLAE-----------LGYSASVPVQVESFSIARKIICGQNCTFVIQSDG 3376

Query: 154  HVWTWGQ-------PWPPGDIKQISVPVRVQGLEQVKL-IAVGAF-HNLALQEDGALWAW 204
             V   G+            D+  +SV   +QG     L  +VG+  H+LAL E G +++W
Sbjct: 3377 TVLACGEGSYGRLGQGNSDDLHSLSVISSLQGFVITDLATSVGSDGHSLALAESGEVFSW 3436

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G+ ++G+LG G+   + +P  ++ L    +V +A G  HS  +T DG+++ +G G+ G+L
Sbjct: 3437 GDGDFGKLGHGNPDRQRRPRQIEALQTEQVVQVACGFKHSAVVTSDGKLFTFGNGDFGKL 3496

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRK 323
            G G    ++K +P++V  L G  I QV+CG  H+  ++ DG  +++FG GD+G+LG G  
Sbjct: 3497 GLG--SVANKKLPERVMALEGYRIGQVACGLNHTACVSTDGMTVWTFGEGDYGKLGLGYA 3554

Query: 324  VTTGQPMEV 332
                 P +V
Sbjct: 3555 TMKLLPQKV 3563



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 135/274 (49%), Gaps = 38/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDG 57
           +A T  + +WG G+ G+LG GN    +    +    P+    ++ + AG R+S A+ DDG
Sbjct: 447 LAETGVVYSWGDGDYGKLGHGNCATHKQPERITG--PFLGKTIKYIHAGYRHSAAVTDDG 504

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGG 100
           K  T                  +P+QV  L+  ++   A G  H L V   G+  +++G 
Sbjct: 505 KLYTWGEGDHGRLGHGDSNARYVPTQVAGLA--EVGSVACGSSHTLVVSKDGKTVWSFGS 562

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            E+G+ G       + G++ R  +V        L +++V AG   S+ LT  G V+TWG 
Sbjct: 563 GEHGKLG-----TGELGKVYRPQVV---EALQGLTIQKVCAGTWFSMALTTAGEVYTWGS 614

Query: 161 PWPPGDIKQ---ISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G       +++P+ V+ L Q ++  I+ G  H LAL ++  ++AWG N  GQ G G
Sbjct: 615 GAILGKGSADAIVNLPMYVEDLAQYRIVDISAGDNHCLALTDEHEVFAWGTNSMGQCGQG 674

Query: 216 DT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            T  P ++P+ V GL G+++  I+AG  HS A T
Sbjct: 675 HTCSPITRPLKVIGLEGVSIRQISAGTSHSMAWT 708



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 26/261 (9%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
            ++P QV + S   I +  I G +C   +   G   A G   YG+ G+     DD   +  
Sbjct: 3348 SVPVQVESFS---IARKIICGQNCTFVIQSDGTVLACGEGSYGRLGQG--NSDDLHSL-- 3400

Query: 122  RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVP 173
              I   Q      +   V + G HS+ L   G V++WG     GD  ++          P
Sbjct: 3401 SVISSLQGFVITDLATSVGSDG-HSLALAESGEVFSWGD----GDFGKLGHGNPDRQRRP 3455

Query: 174  VRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
             +++ L  EQV  +A G  H+  +  DG L+ +GN ++G+LG G    +  P  V  L G
Sbjct: 3456 RQIEALQTEQVVQVACGFKHSAVVTSDGKLFTFGNGDFGKLGLGSVANKKLPERVMALEG 3515

Query: 232  LTLVDIAAGGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +  +A G  H+  ++ DG  V+ +G G++G+LG G    + K++PQKV  +    I +
Sbjct: 3516 YRIGQVACGLNHTACVSTDGMTVWTFGEGDYGKLGLGY--ATMKLLPQKVETVCNLGIKK 3573

Query: 291  VSCGGTHSVALTRDGHIFSFG 311
            V CG   ++ LT+DG +F  G
Sbjct: 3574 VGCGTHLTLFLTKDGKVFVCG 3594



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 146/327 (44%), Gaps = 48/327 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSV---VAGSRNSLAICDDGKTKT- 61
            +++A G G  G+LG GN+++   + V+ +L+ + +  +   V    +SLA+ + G+  + 
Sbjct: 3377 TVLACGEGSYGRLGQGNSDDLHSLSVISSLQGFVITDLATSVGSDGHSLALAESGEVFSW 3436

Query: 62   ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           +  P Q+ AL   ++VQ A G  H   V   G+ + +G  ++G+ 
Sbjct: 3437 GDGDFGKLGHGNPDRQRRPRQIEALQTEQVVQVACGFKHSAVVTSDGKLFTFGNGDFGKL 3496

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREGH-VWTWGQPWP 163
            G         G +  + +  P+R       R  QVA G  H+  ++ +G  VWT+G+   
Sbjct: 3497 G--------LGSVANKKL--PERVMALEGYRIGQVACGLNHTACVSTDGMTVWTFGE--- 3543

Query: 164  PGDIKQI-----SVPVRVQGLEQV-----KLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
             GD  ++     ++ +  Q +E V     K +  G    L L +DG ++  G +      
Sbjct: 3544 -GDYGKLGLGYATMKLLPQKVETVCNLGIKKVGCGTHLTLFLTKDGKVFVCGIDRMPWHS 3602

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
                +   +P  +  LS  ++ D+A G  H   LT  G+V GWG    G+LG      S 
Sbjct: 3603 LFRERAVFKPQIMTSLSDYSIEDLAVGTEHVLFLTTCGKVLGWGMTGEGQLGLP--HVSL 3660

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHSVA 300
               P+ +  L+ + I Q+S G THS A
Sbjct: 3661 VRHPEIITELSDKGIRQISTGRTHSAA 3687



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 5/137 (3%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           E   ++ WG+N   QL  G+ +    P+  +  + +  V+  AG + + A+  DG V   
Sbjct: 346 EKSDVYVWGSNSSHQLAEGNQEKILMPVKSKMFTQVQQVE--AGQYCTFAIHWDGSVSAC 403

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDH 315
           G+G +GRLG G++  S++ +P+++ L      +  S G   H++AL   G ++S+G GD+
Sbjct: 404 GKGSYGRLGLGES--SNQSLPKRILLDCVVKKLSSSKGSDGHTLALAETGVVYSWGDGDY 461

Query: 316 GRLGYGRKVTTGQPMEV 332
           G+LG+G   T  QP  +
Sbjct: 462 GKLGHGNCATHKQPERI 478



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 35/271 (12%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +A +  + +WG G+ G+LG GN + +     ++AL+  +V  V  G ++S  +  DGK  
Sbjct: 3427 LAESGEVFSWGDGDFGKLGHGNPDRQRRPRQIEALQTEQVVQVACGFKHSAVVTSDGKLF 3486

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGNEY 103
            T                + +P +V AL   +I Q A G  H   V   G   + +G  +Y
Sbjct: 3487 TFGNGDFGKLGLGSVANKKLPERVMALEGYRIGQVACGLNHTACVSTDGMTVWTFGEGDY 3546

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG-- 159
            G+ G         G    +  ++PQ+      L +++V  G   ++ LT++G V+  G  
Sbjct: 3547 GKLG--------LGYATMK--LLPQKVETVCNLGIKKVGCGTHLTLFLTKDGKVFVCGID 3596

Query: 160  -QPWPP-GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
              PW      + +  P  +  L    +  +AVG  H L L   G +  WG    GQLG  
Sbjct: 3597 RMPWHSLFRERAVFKPQIMTSLSDYSIEDLAVGTEHVLFLTTCGKVLGWGMTGEGQLGLP 3656

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                   P  +  LS   +  I+ G  HS A
Sbjct: 3657 HVSLVRHPEIITELSDKGIRQISTGRTHSAA 3687


>gi|302855419|ref|XP_002959204.1| hypothetical protein VOLCADRAFT_70529 [Volvox carteri f.
           nagariensis]
 gi|300255434|gb|EFJ39741.1| hypothetical protein VOLCADRAFT_70529 [Volvox carteri f.
           nagariensis]
          Length = 367

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 166/340 (48%), Gaps = 36/340 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + +WG GEDGQLG G  +E      +  L    + SVV G+  ++A+             
Sbjct: 34  VTSWGRGEDGQLGHGQADECLAPKAISTLTDAGIESVVCGAEYTIAVAPSRGQVYSWGWG 93

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G      +P  +   S   + + A G  H L V  +G  + +G N+ GQ G  
Sbjct: 94  DFGRLGHGDCNDVFVPRPIEFFSGRPVHRVACGDTHTLVVAGEGELFTFGRNQNGQLG-- 151

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPG 165
                 T   L   +V+  +      VR VA G  HS+  T  G V++WG         G
Sbjct: 152 ---LGHTNDCLSPQLVVALQGER---VRSVACGSEHSLAATESGTVFSWGWGRYGNLGDG 205

Query: 166 DIKQISVPVRVQGLEQVKLIA--VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           + +   +P RV GLE +++++   G  H+  + EDG ++ +G ++YGQLG GD   R+ P
Sbjct: 206 ESQDRYLPTRVVGLEGIRMVSAECGWRHSAVVSEDGRVFTFGWSKYGQLGHGDHTDRTVP 265

Query: 224 IPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN- 281
             V  L   T +   AGGW H+ A    G +YGWG  + G+LG GD+  S +  P  V  
Sbjct: 266 CQVAALR-HTRISSVAGGWRHTMAADSSGNLYGWGWNKFGQLGLGDS--SDRPSPVLVGG 322

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            LAG+ +  V+CG  H+VA+T  G ++S+GRG +G+LG+G
Sbjct: 323 ALAGQRVSLVTCGWRHTVAVTEGGRVYSWGRGVNGQLGHG 362



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 39/245 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           +A    +  +G  ++GQLG+G+  +     +V AL+  +VRSV  GS +SLA  +     
Sbjct: 133 VAGEGELFTFGRNQNGQLGLGHTNDCLSPQLVVALQGERVRSVACGSEHSLAATESGTVF 192

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG+++   +P++V  L   ++V A  G  H   V + GR + +G ++YG
Sbjct: 193 SWGWGRYGNLGDGESQDRYLPTRVVGLEGIRMVSAECGWRHSAVVSEDGRVFTFGWSKYG 252

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREGHVWTWGQPW 162
           Q G      D T      D  +P + A     R   VA G  H++     G+++ WG  W
Sbjct: 253 QLGH----GDHT------DRTVPCQVAALRHTRISSVAGGWRHTMAADSSGNLYGWG--W 300

Query: 163 PP------GDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                   GD      PV V G    ++V L+  G  H +A+ E G +++WG    GQLG
Sbjct: 301 NKFGQLGLGDSSDRPSPVLVGGALAGQRVSLVTCGWRHTVAVTEGGRVYSWGRGVNGQLG 360

Query: 214 TGDTQ 218
            G  Q
Sbjct: 361 HGAEQ 365


>gi|149033232|gb|EDL88033.1| potential ubiquitin ligase, isoform CRA_a [Rattus norvegicus]
          Length = 449

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 30/311 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P ++ A +  K+++AA G  H L +    R Y+ G N  GQ G++  +            
Sbjct: 12  PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKRPE------ 65

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGL 179
             P +    + +  V+ G  HSV +  +G V+TWG         G+ K+IS +P ++  L
Sbjct: 66  --PIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSL 123

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVD 236
             +K+I V  G +H+LAL EDG +++WG+N  GQLG G+    ++ P  V+ L G+ L  
Sbjct: 124 AGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGIPLAQ 183

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           +AAGG HS AL+  G  +GWG    G+L   G++ K     P  +  L   ++V +SCG 
Sbjct: 184 VAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGY 243

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+  LT DG +F+FG     +L +  +   G P  +          G  V +      +
Sbjct: 244 EHTSVLTEDGQVFTFGGSSSEQLQHSPRSGRGGPQLI-------EGIGGHVSQ------I 290

Query: 356 ACGGRHTLAIV 366
            CG  HT+A V
Sbjct: 291 ECGSYHTIAYV 301



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 24/209 (11%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           W PG  +    P R++    +KL+  A G  H+L L  +  +++ G+N  GQLG    Q 
Sbjct: 5   WAPGRRQ----PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQS 60

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             +P P+Q LS + +  ++ G  HS A+   G V+ WG G  G+LG G++ + S M P K
Sbjct: 61  TKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFM-PTK 119

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPI--NI 336
           +N LAG  I+QVSCG  HS+AL+ DG +FS+G    G+LG G  + +   P +V     I
Sbjct: 120 INSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGI 179

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P  +              VA GG H+ A+
Sbjct: 180 PLAQ--------------VAAGGTHSFAL 194



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 39/288 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + + G    GQLG  + +  +    ++AL    +  V  G  +S+A+C  G+  
Sbjct: 36  LFSNHRVYSCGDNSRGQLGQKSPQSTKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVF 95

Query: 61  T-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
           T                   +P+++N+L+  KI+Q + G +H LA+ + G+ ++WG N  
Sbjct: 96  TWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQ 155

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW--- 158
           GQ G         G  L      PQ+      + + QVAAGGTHS  L+  G  + W   
Sbjct: 156 GQLG--------LGNNLCSQ-ASPQKVKSLEGIPLAQVAAGGTHSFALSLMGTSFGWGNN 206

Query: 159 --GQPWPPGDI--KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GQ    G+   +QI  P  +  L+ + +  I+ G  H   L EDG ++ +G +   QL
Sbjct: 207 RSGQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSSSEQL 266

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
                  R  P  ++G+ G  +  I  G +H+ A +   G+V   GRG
Sbjct: 267 QHSPRSGRGGPQLIEGIGG-HVSQIECGSYHTIAYVYTTGQVVSLGRG 313


>gi|156740286|ref|YP_001430415.1| regulator of chromosome condensation RCC1 [Roseiflexus castenholzii
           DSM 13941]
 gi|156231614|gb|ABU56397.1| regulator of chromosome condensation RCC1 [Roseiflexus castenholzii
           DSM 13941]
          Length = 792

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 167/387 (43%), Gaps = 51/387 (13%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------- 55
           S+  ++ WG    GQLG G   +R     V  L    V ++ AG  ++ A+         
Sbjct: 186 SSGGVMCWGDNWSGQLGDGTTTDRSTPVAVSGLGS-GVTAIAAGGSHTCALMSSGGVWCW 244

Query: 56  ---------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG T   + P  V+ L++  +   A GG+H  A    G    WG N  GQ 
Sbjct: 245 GDNWSGQLGDGTTTDRSTPVAVSGLAS-GVTAIAAGGFHTCARTSSGGVMCWGANWSGQL 303

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---- 162
           G+            R   V     A    V  +AAG +H+  LT  G VW WG  +    
Sbjct: 304 GDGTTTA-------RSTPVAVSGLASG--VTAIAAGDSHTCALTSSGGVWCWGYNFFGQL 354

Query: 163 PPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             G     S PV V GL   V  IA G FH  AL   G +  WG N+ GQLG G T  RS
Sbjct: 355 GDGTTTDRSTPVAVSGLGSGVTAIAAGDFHTCALMSSGGVRCWGRNKDGQLGDGTTTTRS 414

Query: 222 QPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P+ V GL SG+T   IAAG  H+ A T  G V  WG    G+L  GD   + +  P  V
Sbjct: 415 TPVAVSGLVSGVTA--IAAGDDHTCARTSSGGVMCWGDNWSGQL--GDGTTTDRSTPVAV 470

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + L G  +  ++ GG+H+ AL   G ++ +GR   G+LG G     G P+ V   +P+  
Sbjct: 471 SGL-GSGVTAIAAGGSHTCALMSSGGVWCWGRNSSGQLGDGTTTDRGTPVAVS-GLPSEV 528

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
            A            +A GG HT A+  
Sbjct: 529 TA------------IASGGVHTCALTS 543



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLA-------I 53
           + S+  +  WG  +DGQLG G    R     V  L    V ++ AG  ++ A       +
Sbjct: 388 LMSSGGVRCWGRNKDGQLGDGTTTTRSTPVAVSGLVS-GVTAIAAGDDHTCARTSSGGVM 446

Query: 54  C---------DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           C          DG T   + P  V+ L  + +   A GG H  A+   G  + WG N  G
Sbjct: 447 CWGDNWSGQLGDGTTTDRSTPVAVSGL-GSGVTAIAAGGSHTCALMSSGGVWCWGRNSSG 505

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G    R   +     P   V  +A+GG H+  LT  G V  WG  W  
Sbjct: 506 QLGD--------GTTTDRGTPVAVSGLPSE-VTAIASGGVHTCALTSSGGVMCWGANWSG 556

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S PV V GL   V  IA G  H  AL   G +W WG N  GQLG G T  
Sbjct: 557 QLGDGTTTARSTPVAVSGLPSGVMAIAAGDLHTCALTSSGGVWCWGANSSGQLGDGTTTA 616

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
           RS P+ V GL SG+T   IAAG +H+ ALT  G V+ WG    G+LG G    SS   P 
Sbjct: 617 RSTPVAVSGLPSGVTA--IAAGSFHTCALTSSGGVWCWGANWSGQLGDGSYTDSST--PV 672

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            V+ L    +  ++ G  H+ A T  G ++ +    +G+LG G    +  P+ V
Sbjct: 673 AVSGLP-SGVTAIAAGRFHTCARTGSGGVWCWASNRYGQLGDGSYTDSSTPVAV 725



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 163/388 (42%), Gaps = 49/388 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLA-------I 53
           + S+  ++ WG    GQLG G   +R     V  L    V ++ AG  ++ A       +
Sbjct: 133 LMSSGGVMCWGDNWSGQLGDGTTTDRSTPVAVSGLAS-GVTAIAAGDDHTCARTSSGGVM 191

Query: 54  C---------DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           C          DG T   + P  V+ L  + +   A GG H  A+   G  + WG N  G
Sbjct: 192 CWGDNWSGQLGDGTTTDRSTPVAVSGL-GSGVTAIAAGGSHTCALMSSGGVWCWGDNWSG 250

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+            R   V     A    V  +AAGG H+   T  G V  WG  W  
Sbjct: 251 QLGDGTTTD-------RSTPVAVSGLASG--VTAIAAGGFHTCARTSSGGVMCWGANWSG 301

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S PV V GL   V  IA G  H  AL   G +W WG N +GQLG G T  
Sbjct: 302 QLGDGTTTARSTPVAVSGLASGVTAIAAGDSHTCALTSSGGVWCWGYNFFGQLGDGTTTD 361

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P+ V GL G  +  IAAG +H+ AL   G V  WGR + G+L  GD   +++  P  
Sbjct: 362 RSTPVAVSGL-GSGVTAIAAGDFHTCALMSSGGVRCWGRNKDGQL--GDGTTTTRSTPVA 418

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V+ L    +  ++ G  H+ A T  G +  +G    G+LG G       P+ V       
Sbjct: 419 VSGLV-SGVTAIAAGDDHTCARTSSGGVMCWGDNWSGQLGDGTTTDRSTPVAV------- 470

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              G GV        +A GG HT A++ 
Sbjct: 471 SGLGSGV------TAIAAGGSHTCALMS 492



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 151/360 (41%), Gaps = 50/360 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  ++ WG    GQLG G   +R     V  L    V ++ AG  ++ A+       
Sbjct: 82  LTSSGGVMCWGRNGFGQLGDGTTTDRSTPVAVSGLTS-GVTAIAAGYAHTCALMSSGGVM 140

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   + P  V+ L++  +   A G  H  A    G    WG N  G
Sbjct: 141 CWGDNWSGQLGDGTTTDRSTPVAVSGLAS-GVTAIAAGDDHTCARTSSGGVMCWGDNWSG 199

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTREGHVWTW 158
           Q G               D     R  P  +      V  +AAGG+H+  L   G VW W
Sbjct: 200 QLG---------------DGTTTDRSTPVAVSGLGSGVTAIAAGGSHTCALMSSGGVWCW 244

Query: 159 GQPWP----PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           G  W      G     S PV V GL   V  IA G FH  A    G +  WG N  GQLG
Sbjct: 245 GDNWSGQLGDGTTTDRSTPVAVSGLASGVTAIAAGGFHTCARTSSGGVMCWGANWSGQLG 304

Query: 214 TGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G T  RS P+ V GL SG+T   IAAG  H+ ALT  G V+ WG    G+L  GD   +
Sbjct: 305 DGTTTARSTPVAVSGLASGVTA--IAAGDSHTCALTSSGGVWCWGYNFFGQL--GDGTTT 360

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  P  V+ L G  +  ++ G  H+ AL   G +  +GR   G+LG G   T   P+ V
Sbjct: 361 DRSTPVAVSGL-GSGVTAIAAGDFHTCALMSSGGVRCWGRNKDGQLGDGTTTTRSTPVAV 419



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 141/326 (43%), Gaps = 34/326 (10%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           RN      DG T   + P  V+ L++  +   A G  H  A+   G    WG N  GQ G
Sbjct: 93  RNGFGQLGDGTTTDRSTPVAVSGLTS-GVTAIAAGYAHTCALMSSGGVMCWGDNWSGQLG 151

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
           +            R   V     A    V  +AAG  H+   T  G V  WG  W     
Sbjct: 152 DGTTTD-------RSTPVAVSGLASG--VTAIAAGDDHTCARTSSGGVMCWGDNWSGQLG 202

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            G     S PV V GL   V  IA G  H  AL   G +W WG+N  GQLG G T  RS 
Sbjct: 203 DGTTTDRSTPVAVSGLGSGVTAIAAGGSHTCALMSSGGVWCWGDNWSGQLGDGTTTDRST 262

Query: 223 PIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           P+ V GL SG+T   IAAGG+H+ A T  G V  WG    G+L  GD   +++  P  V+
Sbjct: 263 PVAVSGLASGVTA--IAAGGFHTCARTSSGGVMCWGANWSGQL--GDGTTTARSTPVAVS 318

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            LA   +  ++ G +H+ ALT  G ++ +G    G+LG G       P+ V         
Sbjct: 319 GLA-SGVTAIAAGDSHTCALTSSGGVWCWGYNFFGQLGDGTTTDRSTPVAV-------SG 370

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVE 367
            G GV        +A G  HT A++ 
Sbjct: 371 LGSGV------TAIAAGDFHTCALMS 390



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 123/289 (42%), Gaps = 35/289 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WG    GQLG G   +R     V  L P +V ++ +G  ++ A+       
Sbjct: 490 LMSSGGVWCWGRNSSGQLGDGTTTDRGTPVAVSGL-PSEVTAIASGGVHTCALTSSGGVM 548

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   + P  V+ L +  ++  A G  H  A+   G  + WG N  G
Sbjct: 549 CWGANWSGQLGDGTTTARSTPVAVSGLPS-GVMAIAAGDLHTCALTSSGGVWCWGANSSG 607

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G    R   +     P   V  +AAG  H+  LT  G VW WG  W  
Sbjct: 608 QLGD--------GTTTARSTPVAVSGLPSG-VTAIAAGSFHTCALTSSGGVWCWGANWSG 658

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S PV V GL   V  IA G FH  A    G +W W +N YGQLG G    
Sbjct: 659 QLGDGSYTDSSTPVAVSGLPSGVTAIAAGRFHTCARTGSGGVWCWASNRYGQLGDGSYTD 718

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
            S P+ V GL SG+T   IAAG  H+ A T  G V  WG    G+LG G
Sbjct: 719 SSTPVAVSGLVSGVTA--IAAGVVHTCARTSSGGVMCWGANSSGQLGDG 765



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 88/190 (46%), Gaps = 19/190 (10%)

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDI 237
           L+ V  IA G  H  AL   G +  WG N +GQLG G T  RS P+ V GL SG+T   I
Sbjct: 66  LQGVTAIAAGGAHTCALTSSGGVMCWGRNGFGQLGDGTTTDRSTPVAVSGLTSGVTA--I 123

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           AAG  H+ AL   G V  WG    G+L  GD   + +  P  V+ LA   +  ++ G  H
Sbjct: 124 AAGYAHTCALMSSGGVMCWGDNWSGQL--GDGTTTDRSTPVAVSGLA-SGVTAIAAGDDH 180

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           + A T  G +  +G    G+LG G       P+ V          G GV        +A 
Sbjct: 181 TCARTSSGGVMCWGDNWSGQLGDGTTTDRSTPVAV-------SGLGSGV------TAIAA 227

Query: 358 GGRHTLAIVE 367
           GG HT A++ 
Sbjct: 228 GGSHTCALMS 237


>gi|93003290|tpd|FAA00228.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 2334

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 178/390 (45%), Gaps = 47/390 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK------ 60
           +  WG  +  QLG     + +     K L+  KV  V+ GS++  A+   GK        
Sbjct: 431 VFVWGLNDKDQLGGLKGSKHKTPVASKDLQRLKVTQVIGGSKSLFAVTMGGKVYACGEST 490

Query: 61  ---------TENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T ++      L    I + A+  GG H +A+   G  Y+WG  E G+ G  
Sbjct: 491 SGRLGLGPVTGSVSRLTQVLFPQPIKKLAVHSGGRHAMALTYDGHVYSWGDGEEGKLGHG 550

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                 T R +      P++C     +R ++ G +HS  +   G ++TWG         G
Sbjct: 551 SRADALTPRKIE---TFPEKC-----IRDISCGSSHSAAIGSSGTLYTWGHGMYGRLGHG 602

Query: 166 DIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           +   +  P  VQ L  +QV  +A G+     L L +DG +++WG+ ++G+LG G +    
Sbjct: 603 NNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWGDGDFGKLGRGGSDGCC 662

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P PV+ LSG  +V I  G   S AL+  G V+ WG+G++ RLG G +    +  PQ V 
Sbjct: 663 VPKPVERLSGQDVVKIECGAQFSLALSRCGLVWTWGKGDYFRLGHGSDQHVRR--PQVVE 720

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            L    +V V+ G  H +A+T  G +F++G  DHG+ G G      +PM+V         
Sbjct: 721 GLREHKVVDVAVGALHCLAVTEGGQVFAWGDNDHGQQGNGGTTVNRKPMKV--------- 771

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
              G++   I KL ACG  H++A  +   E
Sbjct: 772 --QGLEGVKITKL-ACGSSHSIAFADTSHE 798



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 167/368 (45%), Gaps = 56/368 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--SVVAGSRNSLAICDDGKT----- 59
            + A G G  G+LGIG+NE      ++++++   +   SV AG ++ LA+ ++G+      
Sbjct: 1460 VFATGYGAGGRLGIGSNESVAIPTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSWGE 1519

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        + + P  + +L    IV+ A GG H  A++  G  Y WG   YG+ G 
Sbjct: 1520 GVDGKLGHGNRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWGKGRYGRLGH 1579

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-----VWTWGQPWP 163
            E     D+   L+  +V        L+V      G    +   EG      VW+WG    
Sbjct: 1580 E-----DSEDQLKPKLV--NALKDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGD--- 1629

Query: 164  PGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
             GD  ++         VP  +  L  + +  +A G+  +LAL + G ++ WG  +Y +LG
Sbjct: 1630 -GDYGKLGRGGSDGCKVPAIIDTLMGKHITHVACGSQFSLALSKAGGVYTWGKGDYYRLG 1688

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             G  +   +P  ++ L G+ +V+++ G  H  A  D+G+VY WG  + G++  GD    +
Sbjct: 1689 HGSDEHVRRPKLIESLRGMKVVEVSVGSLHCIAAVDNGDVYTWGDNDEGQI--GDGTTQA 1746

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHSVA--LTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
              +P+ V  L G  I  VSCG  H+VA  L  + H        H R   G K+    P+E
Sbjct: 1747 TQIPRLVAALQGHHISHVSCGSAHTVAWSLPSESHNM------HKRRRTGAKLPDQIPLE 1800

Query: 332  VPI--NIP 337
              +  NIP
Sbjct: 1801 YNLLQNIP 1808



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 175/392 (44%), Gaps = 58/392 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
            SI  WG    GQLG     + +      +L   K   +V G +    +  +GK       
Sbjct: 1407 SIFGWGHNHRGQLGGPEGAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFATGYG 1466

Query: 60   ----------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                      ++  IP+ + ++ +  I Q ++  GG H LA+ ++G  Y+WG    G+ G
Sbjct: 1467 AGGRLGIGSNESVAIPTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSWGEGVDGKLG 1526

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  RI   LR D+++           +VA GG+HS  +   G ++TWG+    
Sbjct: 1527 HGNRSSLDHPRIIESLRGDLIV-----------KVATGGSHSAAINATGGLYTWGKGRYG 1575

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQE----DGALWAWGNNEYGQL 212
                 D +    P  V  L+   ++ V    G    L + E       +W+WG+ +YG+L
Sbjct: 1576 RLGHEDSEDQLKPKLVNALKDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKL 1635

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P  +  L G  +  +A G   S AL+  G VY WG+G++ RLG G ++  
Sbjct: 1636 GRGGSDGCKVPAIIDTLMGKHITHVACGSQFSLALSKAGGVYTWGKGDYYRLGHGSDEHV 1695

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+ +  L G  +V+VS G  H +A   +G ++++G  D G++G G    T Q  ++
Sbjct: 1696 RR--PKLIESLRGMKVVEVSVGSLHCIAAVDNGDVYTWGDNDEGQIGDG----TTQATQI 1749

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            P  + A +  G  +        V+CG  HT+A
Sbjct: 1750 PRLVAALQ--GHHISH------VSCGSAHTVA 1773



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 119/255 (46%), Gaps = 48/255 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+ ++  WG G  G+LG GNN        V+AL   +V  V  GSR++  +C      
Sbjct: 582 IGSSGTLYTWGHGMYGRLGHGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLC------ 635

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                       +   G  Y+WG  ++G+ G    R    G  +
Sbjct: 636 ----------------------------LTQDGLVYSWGDGDFGKLG----RGGSDGCCV 663

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
            + +   +R + + +V+ +  G   S+ L+R G VWTWG+        G  + +  P  V
Sbjct: 664 PKPV---ERLSGQDVVK-IECGAQFSLALSRCGLVWTWGKGDYFRLGHGSDQHVRRPQVV 719

Query: 177 QGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +GL + K+  +AVGA H LA+ E G ++AWG+N++GQ G G T    +P+ VQGL G+ +
Sbjct: 720 EGLREHKVVDVAVGALHCLAVTEGGQVFAWGDNDHGQQGNGGTTVNRKPMKVQGLEGVKI 779

Query: 235 VDIAAGGWHSTALTD 249
             +A G  HS A  D
Sbjct: 780 TKLACGSSHSIAFAD 794



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 24/243 (9%)

Query: 93   GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
            G  + WG N  GQ G  PE     G  ++  I  P   A K I  Q+  G      +T E
Sbjct: 1406 GSIFGWGHNHRGQLGG-PE-----GAKVKIPIPCPSLAALKPI--QLVGGEQTLFTVTGE 1457

Query: 153  GHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAW 204
            G V+  G         G  + +++P  ++ ++ V +  V    G  H LAL  +G +++W
Sbjct: 1458 GKVFATGYGAGGRLGIGSNESVAIPTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSW 1517

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G    G+LG G+      P  ++ L G  +V +A GG HS A+   G +Y WG+G +GRL
Sbjct: 1518 GEGVDGKLGHGNRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWGKGRYGRL 1577

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTR----DGHIFSFGRGDHGRL 318
            G  D++   K  P+ VN L    +V V+CG     ++ +T        ++S+G GD+G+L
Sbjct: 1578 GHEDSEDQLK--PKLVNALKDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKL 1635

Query: 319  GYG 321
            G G
Sbjct: 1636 GRG 1638



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            G ++GWG    G+LG  +  K    +P     LA    +Q+  G      +T +G +F+ 
Sbjct: 1406 GSIFGWGHNHRGQLGGPEGAKVK--IPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFAT 1463

Query: 311  GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL-VACGGRHTLAI 365
            G G  GRLG G   +   P  +           + +    I ++ V  GG+H LA+
Sbjct: 1464 GYGAGGRLGIGSNESVAIPTLI-----------ESIQHVHITQVSVNAGGKHILAL 1508


>gi|198417628|ref|XP_002119426.1| PREDICTED: hect domain and RLD 2 [Ciona intestinalis]
          Length = 2335

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 178/390 (45%), Gaps = 47/390 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK------ 60
           +  WG  +  QLG     + +     K L+  KV  V+ GS++  A+   GK        
Sbjct: 432 VFVWGLNDKDQLGGLKGSKHKTPVASKDLQRLKVTQVIGGSKSLFAVTMGGKVYACGEST 491

Query: 61  ---------TENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T ++      L    I + A+  GG H +A+   G  Y+WG  E G+ G  
Sbjct: 492 SGRLGLGPVTGSVSRLTQVLFPQPIKKLAVHSGGRHAMALTYDGHVYSWGDGEEGKLGHG 551

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                 T R +      P++C     +R ++ G +HS  +   G ++TWG         G
Sbjct: 552 SRADALTPRKIE---TFPEKC-----IRDISCGSSHSAAIGSSGTLYTWGHGMYGRLGHG 603

Query: 166 DIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           +   +  P  VQ L  +QV  +A G+     L L +DG +++WG+ ++G+LG G +    
Sbjct: 604 NNHTLLKPKPVQALSGQQVVQVACGSRDAQTLCLTQDGLVYSWGDGDFGKLGRGGSDGCC 663

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P PV+ LSG  +V I  G   S AL+  G V+ WG+G++ RLG G +    +  PQ V 
Sbjct: 664 VPKPVERLSGQDVVKIECGAQFSLALSRCGLVWTWGKGDYFRLGHGSDQHVRR--PQVVE 721

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            L    +V V+ G  H +A+T  G +F++G  DHG+ G G      +PM+V         
Sbjct: 722 GLREHKVVDVAVGALHCLAVTEGGQVFAWGDNDHGQQGNGGTTVNRKPMKV--------- 772

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
              G++   I KL ACG  H++A  +   E
Sbjct: 773 --QGLEGVKITKL-ACGSSHSIAFADTSHE 799



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 167/368 (45%), Gaps = 56/368 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--SVVAGSRNSLAICDDGKT----- 59
            + A G G  G+LGIG+NE      ++++++   +   SV AG ++ LA+ ++G+      
Sbjct: 1461 VFATGYGAGGRLGIGSNESVAIPTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSWGE 1520

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        + + P  + +L    IV+ A GG H  A++  G  Y WG   YG+ G 
Sbjct: 1521 GVDGKLGHGNRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWGKGRYGRLGH 1580

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-----VWTWGQPWP 163
            E     D+   L+  +V        L+V      G    +   EG      VW+WG    
Sbjct: 1581 E-----DSEDQLKPKLV--NALKDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGD--- 1630

Query: 164  PGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
             GD  ++         VP  +  L  + +  +A G+  +LAL + G ++ WG  +Y +LG
Sbjct: 1631 -GDYGKLGRGGSDGCKVPAIIDTLMGKHITHVACGSQFSLALSKAGGVYTWGKGDYYRLG 1689

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             G  +   +P  ++ L G+ +V+++ G  H  A  D+G+VY WG  + G++  GD    +
Sbjct: 1690 HGSDEHVRRPKLIESLRGMKVVEVSVGSLHCIAAVDNGDVYTWGDNDEGQI--GDGTTQA 1747

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHSVA--LTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
              +P+ V  L G  I  VSCG  H+VA  L  + H        H R   G K+    P+E
Sbjct: 1748 TQIPRLVAALQGHHISHVSCGSAHTVAWSLPSESHNM------HKRRRTGAKLPDQIPLE 1801

Query: 332  VPI--NIP 337
              +  NIP
Sbjct: 1802 YNLLQNIP 1809



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 175/392 (44%), Gaps = 58/392 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
            SI  WG    GQLG     + +      +L   K   +V G +    +  +GK       
Sbjct: 1408 SIFGWGHNHRGQLGGPEGAKVKIPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFATGYG 1467

Query: 60   ----------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                      ++  IP+ + ++ +  I Q ++  GG H LA+ ++G  Y+WG    G+ G
Sbjct: 1468 AGGRLGIGSNESVAIPTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSWGEGVDGKLG 1527

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                   D  RI   LR D+++           +VA GG+HS  +   G ++TWG+    
Sbjct: 1528 HGNRSSLDHPRIIESLRGDLIV-----------KVATGGSHSAAINATGGLYTWGKGRYG 1576

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQE----DGALWAWGNNEYGQL 212
                 D +    P  V  L+   ++ V    G    L + E       +W+WG+ +YG+L
Sbjct: 1577 RLGHEDSEDQLKPKLVNALKDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKL 1636

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P  +  L G  +  +A G   S AL+  G VY WG+G++ RLG G ++  
Sbjct: 1637 GRGGSDGCKVPAIIDTLMGKHITHVACGSQFSLALSKAGGVYTWGKGDYYRLGHGSDEHV 1696

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+ +  L G  +V+VS G  H +A   +G ++++G  D G++G G    T Q  ++
Sbjct: 1697 RR--PKLIESLRGMKVVEVSVGSLHCIAAVDNGDVYTWGDNDEGQIGDG----TTQATQI 1750

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            P  + A +  G  +        V+CG  HT+A
Sbjct: 1751 PRLVAALQ--GHHISH------VSCGSAHTVA 1774



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 119/255 (46%), Gaps = 48/255 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+ ++  WG G  G+LG GNN        V+AL   +V  V  GSR++  +C      
Sbjct: 583 IGSSGTLYTWGHGMYGRLGHGNNHTLLKPKPVQALSGQQVVQVACGSRDAQTLC------ 636

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                       +   G  Y+WG  ++G+ G    R    G  +
Sbjct: 637 ----------------------------LTQDGLVYSWGDGDFGKLG----RGGSDGCCV 664

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
            + +   +R + + +V+ +  G   S+ L+R G VWTWG+        G  + +  P  V
Sbjct: 665 PKPV---ERLSGQDVVK-IECGAQFSLALSRCGLVWTWGKGDYFRLGHGSDQHVRRPQVV 720

Query: 177 QGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +GL + K+  +AVGA H LA+ E G ++AWG+N++GQ G G T    +P+ VQGL G+ +
Sbjct: 721 EGLREHKVVDVAVGALHCLAVTEGGQVFAWGDNDHGQQGNGGTTVNRKPMKVQGLEGVKI 780

Query: 235 VDIAAGGWHSTALTD 249
             +A G  HS A  D
Sbjct: 781 TKLACGSSHSIAFAD 795



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 24/243 (9%)

Query: 93   GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
            G  + WG N  GQ G  PE     G  ++  I  P   A K I  Q+  G      +T E
Sbjct: 1407 GSIFGWGHNHRGQLGG-PE-----GAKVKIPIPCPSLAALKPI--QLVGGEQTLFTVTGE 1458

Query: 153  GHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAW 204
            G V+  G         G  + +++P  ++ ++ V +  V    G  H LAL  +G +++W
Sbjct: 1459 GKVFATGYGAGGRLGIGSNESVAIPTLIESIQHVHITQVSVNAGGKHILALSNEGEVYSW 1518

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G    G+LG G+      P  ++ L G  +V +A GG HS A+   G +Y WG+G +GRL
Sbjct: 1519 GEGVDGKLGHGNRSSLDHPRIIESLRGDLIVKVATGGSHSAAINATGGLYTWGKGRYGRL 1578

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTR----DGHIFSFGRGDHGRL 318
            G  D++   K  P+ VN L    +V V+CG     ++ +T        ++S+G GD+G+L
Sbjct: 1579 GHEDSEDQLK--PKLVNALKDNLVVDVACGNGDAQTLCITEGTGGSSVVWSWGDGDYGKL 1636

Query: 319  GYG 321
            G G
Sbjct: 1637 GRG 1639



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            G ++GWG    G+LG  +  K    +P     LA    +Q+  G      +T +G +F+ 
Sbjct: 1407 GSIFGWGHNHRGQLGGPEGAKVK--IPIPCPSLAALKPIQLVGGEQTLFTVTGEGKVFAT 1464

Query: 311  GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL-VACGGRHTLAI 365
            G G  GRLG G   +   P  +           + +    I ++ V  GG+H LA+
Sbjct: 1465 GYGAGGRLGIGSNESVAIPTLI-----------ESIQHVHITQVSVNAGGKHILAL 1509


>gi|327268361|ref|XP_003218966.1| PREDICTED: x-linked retinitis pigmentosa GTPase regulator-like
           [Anolis carolinensis]
          Length = 788

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 157/317 (49%), Gaps = 26/317 (8%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           N P+ V AL   K+  AA G  H L   +QG  YA GGN  GQ G     +  T  ++  
Sbjct: 76  NKPTCVKALKPEKVKLAACGRNHTLICTEQGNVYAAGGNSEGQLGLGDTEERSTFHLIS- 134

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQG 178
                Q       ++Q+AAG   S VLT +G +  WG         GD   +SVP +V  
Sbjct: 135 -FFTKQH-----KIKQLAAGSYTSAVLTEDGQLVMWGDNSEGQIGLGDKAYVSVPHQVDI 188

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVD 236
            + V  I+ G +H+  + +DG L+ +G  E G+LG    Q ++  +P  V G+SG  +  
Sbjct: 189 GKPVSCISCGYYHSALITQDGELYTFGEPENGKLGLSPKQLKNHKLPQLVSGISG-KVSK 247

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +A GG H+  L + G+VY +G G++G+LG G     +   P+ V+ L    I  ++CG  
Sbjct: 248 VACGGGHTVVLAE-GDVYTFGLGQYGQLGHGTFVFETSE-PKTVDHLGKHKICHIACGEN 305

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+  +T +G +++FG G HG+LG G +  T Q +        P    + +  R+I   VA
Sbjct: 306 HTALITENGLMYTFGDGRHGKLGLGEENYTNQFV--------PTLCSNFL--RFIVHSVA 355

Query: 357 CGGRHTLAIVEWQTEES 373
           CGG H L     + +ES
Sbjct: 356 CGGCHMLVFASPRHKES 372



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 159/328 (48%), Gaps = 40/328 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK K  EN+PS+     N K +  + G  H   V + G+ Y +G N +GQ G   
Sbjct: 13  AVFTFGKCKFAENVPSKF-WFKNDKPLHISCGDEHTSVVTENGKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                      ++ V    C   L    V+  A G  H+++ T +G+V+  G        
Sbjct: 69  --------FGSKNAVNKPTCVKALKPEKVKLAACGRNHTLICTEQGNVYAAGGNSEGQLG 120

Query: 164 PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++ S    +       ++K +A G++ +  L EDG L  WG+N  GQ+G GD    
Sbjct: 121 LGDTEERSTFHLISFFTKQHKIKQLAAGSYTSAVLTEDGQLVMWGDNSEGQIGLGDKAYV 180

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG       +  +PQ V
Sbjct: 181 S--VPHQVDIGKPVSCISCGYYHSALITQDGELYTFGEPENGKLGLSPKQLKNHKLPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
           + ++G+ + +V+CGG H+V L  +G +++FG G +G+LG+G  V  T +P  V       
Sbjct: 239 SGISGK-VSKVACGGGHTVVLA-EGDVYTFGLGQYGQLGHGTFVFETSEPKTV------- 289

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               D + +  I   +ACG  HT  I E
Sbjct: 290 ----DHLGKHKICH-IACGENHTALITE 312



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 148/332 (44%), Gaps = 38/332 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           +  +GS   GQLG G+         VKAL+P KV+    G RN   IC +          
Sbjct: 56  LYMFGSNNWGQLGFGSKNAVNKPTCVKALKPEKVKLAACG-RNHTLICTEQGNVYAAGGN 114

Query: 57  -------GKTKTENIPSQVNALSNT-KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                  G T+  +    ++  +   KI Q A G +    + + G+   WG N  GQ G 
Sbjct: 115 SEGQLGLGDTEERSTFHLISFFTKQHKIKQLAAGSYTSAVLTEDGQLVMWGDNSEGQIG- 173

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------W 162
                   G   +  + +P +      V  ++ G  HS ++T++G ++T+G+P       
Sbjct: 174 -------LGD--KAYVSVPHQVDIGKPVSCISCGYYHSALITQDGELYTFGEPENGKLGL 224

Query: 163 PPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPR 220
            P  +K   +P  V G+  +V  +A G  H + L E G ++ +G  +YGQLG G      
Sbjct: 225 SPKQLKNHKLPQLVSGISGKVSKVACGGGHTVVLAE-GDVYTFGLGQYGQLGHGTFVFET 283

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S+P  V  L    +  IA G  H+  +T++G +Y +G G HG+LG G+ + +++ VP   
Sbjct: 284 SEPKTVDHLGKHKICHIACGENHTALITENGLMYTFGDGRHGKLGLGEENYTNQFVPTLC 343

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +      +  V+CGG H +      H  S  R
Sbjct: 344 SNFLRFIVHSVACGGCHMLVFASPRHKESDKR 375


>gi|74002225|ref|XP_851549.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Canis lupus
           familiaris]
          Length = 1015

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 155/305 (50%), Gaps = 30/305 (9%)

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC 130
           L   ++ QAA G  H L +   G+ ++ G N  GQ G+   R       L+R      R 
Sbjct: 20  LGGVELRQAASGERHSLLLLSNGQVHSCGDNGRGQLGQ---RGAPCSAQLKRI-----RA 71

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKL- 184
              L V  V+ G  HS+ +  +G V+ WG         G+ K+ + +P++++ L  +K+ 
Sbjct: 72  LETLHVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGTGEFKETNLIPMKIKTLNDIKIK 131

Query: 185 -IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGW 242
            ++ G +H+LAL E G +++WG+N  GQLG G   P ++ P  V+ L G+ L  +AAGG 
Sbjct: 132 QVSCGHYHSLALSEGGQVFSWGSNSDGQLGLGKKFPSQASPQRVRSLDGIPLAQVAAGGA 191

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV-PQKVNLLAGEDIVQVSCGGTHSVAL 301
           HS AL+  G  +GWGR   G+L    N+ S +   P  ++ L    ++ +SCG  H+V L
Sbjct: 192 HSFALSLSGTSFGWGRNNAGQLALHKNNVSGQSYKPYSISALKNLGVIYISCGYEHTVVL 251

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           T++G +F+FG   +G+LG+        P  V           +G+D   +   + CG  H
Sbjct: 252 TQNGKVFTFGDNTYGQLGHSPTAEKSGPQLV-----------EGID--GLVSQIDCGSYH 298

Query: 362 TLAIV 366
           TLA V
Sbjct: 299 TLAYV 303



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 85/365 (23%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT-----------------KTENIPSQVNALSNT 74
           ++ALE   V  V  G  +SLA+C  G+                  +T  IP ++  L++ 
Sbjct: 69  IRALETLHVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGTGEFKETNLIPMKIKTLNDI 128

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           KI Q + G +H LA+ + G+ ++WG N  GQ G         G+        P + +P+ 
Sbjct: 129 KIKQVSCGHYHSLALSEGGQVFSWGSNSDGQLG--------LGK------KFPSQASPQR 174

Query: 135 I-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----------PVRV 176
           +       + QVAAGG HS  L+  G  + WG+     +  Q+++           P  +
Sbjct: 175 VRSLDGIPLAQVAAGGAHSFALSLSGTSFGWGR----NNAGQLALHKNNVSGQSYKPYSI 230

Query: 177 QGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
             L+   V  I+ G  H + L ++G ++ +G+N YGQLG   T  +S P  V+G+ GL +
Sbjct: 231 SALKNLGVIYISCGYEHTVVLTQNGKVFTFGDNTYGQLGHSPTAEKSGPQLVEGIDGL-V 289

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-------LLAGED 287
             I  G +H+ A       Y +  G+    G     KSS   P+ +        L++ +D
Sbjct: 290 SQIDCGSYHTLA-------YVYTTGKVVSFGREPTCKSSPTHPEALTENVDFTCLISADD 342

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +V                HIF+ G   +    Y    +T  P ++   +P      + + 
Sbjct: 343 LVDFQV-----------KHIFA-GTYANFVTTYQNTSSTDVPRKI---LPGISQINESLT 387

Query: 348 RRWIA 352
            +WIA
Sbjct: 388 EKWIA 392



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 108/212 (50%), Gaps = 22/212 (10%)

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           +WG P P G + +     R  GL  V+L   A G  H+L L  +G + + G+N  GQLG 
Sbjct: 4   SWG-PGPRGPVSR-----RRVGLGGVELRQAASGERHSLLLLSNGQVHSCGDNGRGQLGQ 57

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
                 +Q   ++ L  L +  ++ G  HS A+   G V+ WG G  G+LG G+  K + 
Sbjct: 58  RGAPCSAQLKRIRALETLHVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGTGEF-KETN 116

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVP 333
           ++P K+  L    I QVSCG  HS+AL+  G +FS+G    G+LG G+K  +   P  V 
Sbjct: 117 LIPMKIKTLNDIKIKQVSCGHYHSLALSEGGQVFSWGSNSDGQLGLGKKFPSQASPQRV- 175

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                   + DG+    +A+ VA GG H+ A+
Sbjct: 176 -------RSLDGIP---LAQ-VAAGGAHSFAL 196



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL G+ L   A+G  HS  L  +G+V+  G    G+LG      S+++  +++  L    
Sbjct: 19  GLGGVELRQAASGERHSLLLLSNGQVHSCGDNGRGQLGQRGAPCSAQL--KRIRALETLH 76

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +  VSCG  HS+A+   G +F++G G  G+LG G    T     +P+ I    +      
Sbjct: 77  VDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGTGEFKETNL---IPMKIKTLNDIK---- 129

Query: 348 RRWIAKLVACGGRHTLAIVE 367
                K V+CG  H+LA+ E
Sbjct: 130 ----IKQVSCGHYHSLALSE 145


>gi|55249804|gb|AAH85921.1| Herc6 protein, partial [Rattus norvegicus]
          Length = 1034

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 153/311 (49%), Gaps = 30/311 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P ++ A +  K+++AA G  H L +    R Y+ G N  GQ G++  +            
Sbjct: 19  PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQSTKRPE------ 72

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGL 179
             P +    + +  V+ G  HSV +  +G V+TWG         G+ K+IS +P ++  L
Sbjct: 73  --PIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFMPTKINSL 130

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVD 236
             +K+I V  G +H+LAL EDG +++WG+N  GQLG G+    ++ P  V+ L G+ L  
Sbjct: 131 AGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQKVKSLEGIPLAQ 190

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           +AAGG HS AL+  G  +GWG    G+L   G++ K     P  +  L   ++V +SCG 
Sbjct: 191 VAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGY 250

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+  LT DG +F+FG     +L +  +   G P  +          G  V +      +
Sbjct: 251 EHTSVLTEDGQVFTFGGSSSEQLQHSPRSGRGGPQLI-------EGIGGHVSQ------I 297

Query: 356 ACGGRHTLAIV 366
            CG  HT+A V
Sbjct: 298 ECGSYHTIAYV 308



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 18/206 (8%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           W PG  +    P R++    +KL+  A G  H+L L  +  +++ G+N  GQLG    Q 
Sbjct: 12  WAPGRRQ----PRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQS 67

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             +P P+Q LS + +  ++ G  HS A+   G V+ WG G  G+LG G++ + S M P K
Sbjct: 68  TKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLGIGESKEISFM-PTK 126

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +N LAG  I+QVSCG  HS+AL+ DG +FS+G    G+LG G  + +          P  
Sbjct: 127 INSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQAS-------PQK 179

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
             + +G+    +A+ VA GG H+ A+
Sbjct: 180 VKSLEGIP---LAQ-VAAGGTHSFAL 201



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 39/288 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + + G    GQLG  + +  +    ++AL    +  V  G  +S+A+C  G+  
Sbjct: 43  LFSNHRVYSCGDNSRGQLGQKSPQSTKRPEPIQALSTVHIDLVSCGKEHSVAVCHQGRVF 102

Query: 61  T-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
           T                   +P+++N+L+  KI+Q + G +H LA+ + G+ ++WG N  
Sbjct: 103 TWGAGSEGQLGIGESKEISFMPTKINSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQ 162

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW--- 158
           GQ G         G  L      PQ+      + + QVAAGGTHS  L+  G  + W   
Sbjct: 163 GQLG--------LGNNLCSQ-ASPQKVKSLEGIPLAQVAAGGTHSFALSLMGTSFGWGNN 213

Query: 159 --GQPWPPGDI--KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
             GQ    G+   +QI  P  +  L+ + +  I+ G  H   L EDG ++ +G +   QL
Sbjct: 214 RSGQLALSGNSAKEQIYKPHSIGALKTLNVVYISCGYEHTSVLTEDGQVFTFGGSSSEQL 273

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
                  R  P  ++G+ G  +  I  G +H+ A +   G+V   GRG
Sbjct: 274 QHSPRSGRGGPQLIEGIGG-HVSQIECGSYHTIAYVYTTGQVVSLGRG 320


>gi|195170687|ref|XP_002026143.1| GL16177 [Drosophila persimilis]
 gi|194111023|gb|EDW33066.1| GL16177 [Drosophila persimilis]
          Length = 1052

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 188/399 (47%), Gaps = 42/399 (10%)

Query: 6   SIIAWGSGEDGQLGIG--NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-- 61
           ++  WG    GQLG+G   NE+      ++      V+ +  G R++L +  +G+     
Sbjct: 2   ALYCWGDASHGQLGLGGIENEQILLPSQIEFKPDSPVQQIACGHRHTLFLTANGQVYACG 61

Query: 62  --------ENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +P++    +  L    ++Q A G  H +A+ + G+  +WG N+ GQ G  
Sbjct: 62  NNDHHQLGHELPTKRPLPIPELQAYVVIQIACGSRHSMALTEWGQILSWGDNDCGQVGHS 121

Query: 110 PERK-DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------ 162
            +    +  +ILR  +           V Q+A G  HS+ LT  G +++WG         
Sbjct: 122 TDNDVIELPKILRFLV--------SRTVVQIACGNNHSLALTSCGELYSWGSNIYGQLGV 173

Query: 163 -PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             P D+   + P+R+  +  + L  IA G  H+  + +  A++ WG N  GQLG  D Q 
Sbjct: 174 QSPKDLPHSNAPLRLTTILGIPLATIACGGNHSFLISKSSAVFGWGKNTCGQLGLNDEQN 233

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P  ++ +  L +  +  G  +S  LT++G V+  G G +G+LG G ++  ++M+P+ 
Sbjct: 234 RAYPSQLKSMRTLGVRFVTCGDEYSVFLTNEGGVFTCGAGNYGQLGHGVSN--NEMIPRM 291

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEV--PINI 336
           V  L G  I QV+CG  H++AL    G ++SFG G  G+LG    ++   P  V  P   
Sbjct: 292 VIELMGSTITQVACGNRHTLALVPSGGRVYSFGLGASGQLGTRNTISQTLPKVVIGPWVS 351

Query: 337 P---APRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
           P   A   + +G D+  + + +  GG  ++    +  ++
Sbjct: 352 PSGSALMESSEGADKSVVIRKIFSGGDQSIVTTTFYVDK 390



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 31/205 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ ++++  WG    GQLG+ + + R +   +K++    VR V  G   S+ + ++G   
Sbjct: 209 ISKSSAVFGWGKNTCGQLGLNDEQNRAYPSQLKSMRTLGVRFVTCGDEYSVFLTNEGGVF 268

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E IP  V  L  + I Q A G  H LA V   GR Y++G    
Sbjct: 269 TCGAGNYGQLGHGVSNNEMIPRMVIELMGSTITQVACGNRHTLALVPSGGRVYSFGLGAS 328

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA---------PKLIVRQVAAGGTHSVVLTREGH 154
           GQ G          +++    V P   A           +++R++ +GG  S+V T    
Sbjct: 329 GQLGTRNTISQTLPKVVIGPWVSPSGSALMESSEGADKSVVIRKIFSGGDQSIVTTT--- 385

Query: 155 VWTWGQPWPPGDIKQISVPVRVQGL 179
              +    PP D++  +   ++  L
Sbjct: 386 --FYVDKVPPEDLRSYNPKSQILSL 408


>gi|444918725|ref|ZP_21238787.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444709515|gb|ELW50526.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 394

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 172/350 (49%), Gaps = 52/350 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------T 59
           S+ AWG  +  QLG      R     V  L    V+SV +G   SLA+  DG       T
Sbjct: 79  SVWAWGRNDAAQLGDETVVNRSAPTRVAGLS--GVQSVASGYFQSLALGGDGSVWAWGLT 136

Query: 60  KTENI---PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
            + +I   P+++  LS+  I+  + G +H LA+   G  + WG        E  ++  DT
Sbjct: 137 NSSDIQMTPAKLPELSD--IIAISAGTFHSLALQQSGSVWFWG--------ELLDQSSDT 186

Query: 117 GRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                          P L+     +  +AAG +HS+ L + G VW WG         G  
Sbjct: 187 ---------------PVLVEGLSGITTIAAGNSHSLALDKSGVVWAWGDNTLGQLGNGTQ 231

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            + + PV+VQGL  +KLIA G  H+LAL  +  +W WG+N+ GQLG G+ +   + +P+Q
Sbjct: 232 DESTTPVKVQGLPTIKLIAAGGAHSLALDTENRVWTWGSNDEGQLGNGN-KGGLRTLPIQ 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L+   +  +AAG  HS ALT+DG V  WG    G+LG   +D S K     V   +  +
Sbjct: 291 VLNLKDVKQLAAGIRHSLALTNDGNVMAWGSDSAGQLG---DDLSLKEQLSPVETSSLTN 347

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           ++ +S G +HS+AL  +G +F++G   +G+LG     T   P+ +P+  P
Sbjct: 348 VIAISAGHSHSLALLSNGALFAWGSNSYGQLG---GSTPTMPIPLPVMFP 394



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 142/292 (48%), Gaps = 40/292 (13%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           + Q +  G H LA+   G  +AWG N+  Q G+E         ++ R    P R A    
Sbjct: 61  VSQVSSRGQHTLALRTDGSVWAWGRNDAAQLGDE--------TVVNRSA--PTRVAGLSG 110

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           V+ VA+G   S+ L  +G VW WG      DI+    P ++  L  +  I+ G FH+LAL
Sbjct: 111 VQSVASGYFQSLALGGDGSVWAWGLT-NSSDIQM--TPAKLPELSDIIAISAGTFHSLAL 167

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           Q+ G++W WG            Q    P+ V+GLSG+T   IAAG  HS AL   G V+ 
Sbjct: 168 QQSGSVWFWGELL--------DQSSDTPVLVEGLSGIT--TIAAGNSHSLALDKSGVVWA 217

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+LG G  D+S+   P KV  L    I  ++ GG HS+AL  +  ++++G  D 
Sbjct: 218 WGDNTLGQLGNGTQDEST--TPVKVQGL--PTIKLIAAGGAHSLALDTENRVWTWGSNDE 273

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+LG G K   G    +PI +   ++           K +A G RH+LA+  
Sbjct: 274 GQLGNGNK---GGLRTLPIQVLNLKD----------VKQLAAGIRHSLALTN 312


>gi|322795832|gb|EFZ18511.1| hypothetical protein SINV_14428 [Solenopsis invicta]
          Length = 786

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 161/320 (50%), Gaps = 35/320 (10%)

Query: 64  IPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
           IP+ + ++ +  I + A+  GG HC+A+  +G  Y+WG  + G+ G   +   D  +++ 
Sbjct: 2   IPTLLESIQHVFIKKVAVSSGGKHCIALSSEGHVYSWGEGDDGKLGHGNKVSYDRPKLIE 61

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
             + +         +  +A GG HS  +T  G ++TWG+        GD      P  V+
Sbjct: 62  DLLGVE--------IVDIACGGHHSAAITSAGWLYTWGKGRYGRLGHGDSDDQLRPKVVE 113

Query: 178 GLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
            L+  K+I V    G    L + +D  +W+WG+ +YG+LG G +     P+ +  L+GL 
Sbjct: 114 ALQDYKVIDVACGSGDAQTLCVTDDDNVWSWGDGDYGKLGRGGSDGCKVPLKIDSLAGLG 173

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P+KV  L G+ I+ ++ 
Sbjct: 174 VVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRR--PRKVAALQGKKIISIAT 231

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H VA +  G +F++G  D G+LG G    T   +  P  + A +  G  + R     
Sbjct: 232 GSLHCVACSDKGEVFTWGDNDEGQLGDG----TTSALHRPRLVHALQ--GKKITR----- 280

Query: 354 LVACGGRHTLAIVEWQTEES 373
            VACG  HTLA   W T ++
Sbjct: 281 -VACGSAHTLA---WSTAKA 296



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 58/310 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG G+DG+LG GN                     V+  R            
Sbjct: 29  LSSEGHVYSWGEGDDGKLGHGNK--------------------VSYDR------------ 56

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P  +  L   +IV  A GG H  A+   G  Y WG   YG+ G       D+   L
Sbjct: 57  ----PKLIEDLLGVEIVDIACGGHHSAAITSAGWLYTWGKGRYGRLGH-----GDSDDQL 107

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
           R  +V   +   K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 108 RPKVVEALQ-DYKVIDVACGSGDAQTLCVTDDDNVWSWGD----GDYGKLGRGGSDGCKV 162

Query: 173 PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P+++  L  + ++ V  G+  ++AL   GA++ WG  +Y +LG G      +P  V  L 
Sbjct: 163 PLKIDSLAGLGVVKVECGSQFSVALTRSGAVYTWGKGDYHRLGHGTDDHVRRPRKVAALQ 222

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  ++ IA G  H  A +D GEV+ WG  + G+L  GD   S+   P+ V+ L G+ I +
Sbjct: 223 GKKIISIATGSLHCVACSDKGEVFTWGDNDEGQL--GDGTTSALHRPRLVHALQGKKITR 280

Query: 291 VSCGGTHSVA 300
           V+CG  H++A
Sbjct: 281 VACGSAHTLA 290


>gi|114321835|ref|YP_743518.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114228229|gb|ABI58028.1| regulator of chromosome condensation, RCC1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 818

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 179/381 (46%), Gaps = 58/381 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+ AWG  E GQLG+G+ +ER     V +   +   ++ AG R+SLA+  DG        
Sbjct: 292 SLWAWGDNEYGQLGLGDTDERHAPEQVGSNTDWA--AISAGRRHSLAVKADGSLWSWGYN 349

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   N P QV A ++  +V A  GG H LAV   G    WG N  GQ G  
Sbjct: 350 DSGQLGLGDTADRNAPEQVGADTDWDLVSA--GGEHSLAVKADGTLMVWGLNHLGQLG-- 405

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G  + RD  +P      L+     AG  H+V +  +G +  WG         G
Sbjct: 406 ------LGDTVSRDAPVPIASGIALV-----AGRNHTVAVNPDGTLRAWGDNEYGQLGLG 454

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            ++ I  P +         +  G+F H+L L++DG LWAWG N YGQLG GDT  R+ P 
Sbjct: 455 VMRYIVTPSQTVTGSAWAAVNGGSFNHSLGLRDDGTLWAWGRNNYGQLGLGDTDDRATPE 514

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V   +    V+ A+  +H+ A+ +DG ++ WGR   G+LG   +D + +  P++V   +
Sbjct: 515 QVGSHTDWAAVNAAS--YHTLAVKNDGTLWAWGRNSSGQLGL--SDTNDRHTPERVG--S 568

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
             D   VS G +H+ A+  DG ++++G   +G+LG G       P +V            
Sbjct: 569 DTDWATVSVGQSHTSAVKPDGTLWAWGWNHYGQLGLGDTSDRLSPEQV------------ 616

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
           G +  W+A  V+ G  HT+A+
Sbjct: 617 GGESNWLA--VSTGLHHTVAV 635



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 169/385 (43%), Gaps = 59/385 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN-SLAICDDG------- 57
           ++ AWG  E GQLG+G    R  V   + +      +V  GS N SL + DDG       
Sbjct: 439 TLRAWGDNEYGQLGLG--VMRYIVTPSQTVTGSAWAAVNGGSFNHSLGLRDDGTLWAWGR 496

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     T     P QV + ++   V AA   +H LAV + G  +AWG N  GQ G 
Sbjct: 497 NNYGQLGLGDTDDRATPEQVGSHTDWAAVNAA--SYHTLAVKNDGTLWAWGRNSSGQLGL 554

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                 DT      D   P+R         V+ G +H+  +  +G +W WG  W      
Sbjct: 555 S-----DT-----NDRHTPERVGSDTDWATVSVGQSHTSAVKPDGTLWAWG--WNHYGQL 602

Query: 165 --GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             GD      P +V G      ++ G  H +A++ DG LWAWG N  GQLG G T  R  
Sbjct: 603 GLGDTSDRLSPEQVGGESNWLAVSTGLHHTVAVKTDGTLWAWGWNVRGQLGLGHTSDRHA 662

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V   S      ++A G+ + A+  DG ++ WG   +G+LG GD D  ++  P +V  
Sbjct: 663 PVQVG--SDTDWAAVSASGYRTLAVKADGTLWAWGENNNGQLGLGDTD--NRNTPAQVGN 718

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
            A  D   VS G  H++A   D  ++++GR   G+LG G       P++V          
Sbjct: 719 DA--DWAAVSTGLFHTLAFKEDDTLWAWGRNHDGQLGLGDTDNRDAPVQV---------- 766

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
             G +  W    V+ GG HTLA + 
Sbjct: 767 --GNETDW--STVSGGGYHTLATMS 787



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 145/301 (48%), Gaps = 27/301 (8%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           RN       G T   ++P QV   S+   V A     H +AV   G  +AWG +     G
Sbjct: 149 RNGYGRLGLGDTDDRDVPEQVGTDSDWTAVSAGRD--HTVAVKANGTLWAWGRSGRIGLG 206

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
           +  +R +            P++         ++AGG+H+V +  +G +W WG+       
Sbjct: 207 DSGDRDE------------PEQVGVDNDWIALSAGGSHTVAVKADGTLWAWGRNNAGQLG 254

Query: 164 PGDIKQISVPVRV-QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            GD      P +V    +  K I+ G  H+LA++ DG+LWAWG+NEYGQLG GDT  R  
Sbjct: 255 LGDTNHHYTPTQVGTDTDWAKKISAGRRHSLAVKADGSLWAWGDNEYGQLGLGDTDERHA 314

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V   S      I+AG  HS A+  DG ++ WG  + G+LG G  D + +  P++V  
Sbjct: 315 PEQVG--SNTDWAAISAGRRHSLAVKADGSLWSWGYNDSGQLGLG--DTADRNAPEQVG- 369

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP--INIPAPR 340
            A  D   VS GG HS+A+  DG +  +G    G+LG G  V+   P+ +   I + A R
Sbjct: 370 -ADTDWDLVSAGGEHSLAVKADGTLMVWGLNHLGQLGLGDTVSRDAPVPIASGIALVAGR 428

Query: 341 N 341
           N
Sbjct: 429 N 429



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 134/283 (47%), Gaps = 31/283 (10%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H +AV   G  +AWG N YG+ G         G    RD  +P++         V+AG  
Sbjct: 134 HTVAVKADGTLWAWGRNGYGRLG--------LGDTDDRD--VPEQVGTDSDWTAVSAGRD 183

Query: 145 HSVVLTREGHVWTWGQP--WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALW 202
           H+V +   G +W WG+      GD      P +V        ++ G  H +A++ DG LW
Sbjct: 184 HTVAVKANGTLWAWGRSGRIGLGDSGDRDEPEQVGVDNDWIALSAGGSHTVAVKADGTLW 243

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           AWG N  GQLG GDT     P  V G        I+AG  HS A+  DG ++ WG  E+G
Sbjct: 244 AWGRNNAGQLGLGDTNHHYTPTQV-GTDTDWAKKISAGRRHSLAVKADGSLWAWGDNEYG 302

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           +LG GD D+  +  P++V   +  D   +S G  HS+A+  DG ++S+G  D G+LG G 
Sbjct: 303 QLGLGDTDE--RHAPEQVG--SNTDWAAISAGRRHSLAVKADGSLWSWGYNDSGQLGLGD 358

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 P +V            G D  W   LV+ GG H+LA+
Sbjct: 359 TADRNAPEQV------------GADTDW--DLVSAGGEHSLAV 387



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 159/350 (45%), Gaps = 45/350 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG    GQLG+G+ ++R     V +   +   +V A S ++LA+ +DG        
Sbjct: 490 TLWAWGRNNYGQLGLGDTDDRATPEQVGSHTDWA--AVNAASYHTLAVKNDGTLWAWGRN 547

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   + P +V   S+T     ++G  H  AV   G  +AWG N YGQ G  
Sbjct: 548 SSGQLGLSDTNDRHTPERVG--SDTDWATVSVGQSHTSAVKPDGTLWAWGWNHYGQLG-- 603

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
                DT      D + P++   +     V+ G  H+V +  +G +W WG  W       
Sbjct: 604 ---LGDT-----SDRLSPEQVGGESNWLAVSTGLHHTVAVKTDGTLWAWG--WNVRGQLG 653

Query: 165 -GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G       PV+V        ++   +  LA++ DG LWAWG N  GQLG GDT  R+ P
Sbjct: 654 LGHTSDRHAPVQVGSDTDWAAVSASGYRTLAVKADGTLWAWGENNNGQLGLGDTDNRNTP 713

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V   +    V  + G +H+ A  +D  ++ WGR   G+LG GD D   +  P +V   
Sbjct: 714 AQVGNDADWAAV--STGLFHTLAFKEDDTLWAWGRNHDGQLGLGDTDN--RDAPVQVG-- 767

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
              D   VS GG H++A   DG + ++G    G+LG  R +   QP EVP
Sbjct: 768 NETDWSTVSGGGYHTLATMSDGTLRAWGLNTSGQLGQ-RTMWFDQPQEVP 816



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 21/182 (11%)

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           ++A G  H +A++ DG LWAWG N YG+LG GDT  R  P  V   S  T V  +AG  H
Sbjct: 127 VLAAGDDHTVAVKADGTLWAWGRNGYGRLGLGDTDDRDVPEQVGTDSDWTAV--SAGRDH 184

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           + A+  +G ++ WGR   GR+G GD+    +  P++V +    D + +S GG+H+VA+  
Sbjct: 185 TVAVKANGTLWAWGRS--GRIGLGDSGDRDE--PEQVGV--DNDWIALSAGGSHTVAVKA 238

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG ++++GR + G+LG G       P +V            G D  W AK ++ G RH+L
Sbjct: 239 DGTLWAWGRNNAGQLGLGDTNHHYTPTQV------------GTDTDW-AKKISAGRRHSL 285

Query: 364 AI 365
           A+
Sbjct: 286 AV 287


>gi|324502986|gb|ADY41305.1| E3 ubiquitin-protein ligase HERC4 [Ascaris suum]
          Length = 1038

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 176/369 (47%), Gaps = 61/369 (16%)

Query: 7   IIAWGSGEDGQLG---IGNNEEREWV----CVVKALEPY---KVRSVVAGSRNSLAICDD 56
           + A+G G DGQLG     N ++   V     VV A   +    VR++  G R++L + DD
Sbjct: 27  LYAFGYGGDGQLGNRGFLNGDDGNIVKTPQVVVGAPTSHDGVSVRAIATGERHTLFLADD 86

Query: 57  GKT----KTEN---------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           GK       EN                P  ++   N  IVQ A G  H +AV D GR +A
Sbjct: 87  GKVWSCGSNENGELGRGGCQEGSFTIYPVLLSGGVN--IVQIAAGRAHNMAVADDGRLFA 144

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG N +GQ    P     T         IP+R        QVA G  H++ +   G ++ 
Sbjct: 145 WGSNSHGQLAL-PSNITSTD--------IPKRVVSLTETVQVACGTDHTIAIVESGRIFV 195

Query: 158 WG-QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGT 214
           WG QP    D + +  P  ++    + ++ V  G+ + +AL   GA++ WG+NEYGQLGT
Sbjct: 196 WGLQP----DGRVLYAPKEIEFFMALPVVQVNAGSDYYVALTVSGAMFVWGSNEYGQLGT 251

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            D + R+ P  V  L  L +V +A G  H+ ALT +G ++  G    G+LG      S +
Sbjct: 252 SDNKERTTPAEVTTLHSLNVVHVACGHSHTVALTHEGRLFVCGSDSCGQLG------SGR 305

Query: 275 MVPQKVNLLA-----GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTG 327
            VP +  +LA     G  + +V+CG  H++AL   G +++FG    G+LG G  R   T 
Sbjct: 306 KVPSQNTMLAVTEMLGTHVTRVACGRCHTLALA-GGKMYAFGLNSSGQLGSGNVRSQVTP 364

Query: 328 QPMEVPINI 336
           +P++   ++
Sbjct: 365 RPIDALTDV 373



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 32/291 (10%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  H L + D G+ ++ G NE G+ G    ++           + P   +  + + Q+
Sbjct: 74  ATGERHTLFLADDGKVWSCGSNENGELGRGGCQEGSF-------TIYPVLLSGGVNIVQI 126

Query: 140 AAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           AAG  H++ +  +G ++ WG     Q   P +I    +P RV  L +   +A G  H +A
Sbjct: 127 AAGRAHNMAVADDGRLFAWGSNSHGQLALPSNITSTDIPKRVVSLTETVQVACGTDHTIA 186

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + E G ++ WG    G++          P  ++    L +V + AG  +  ALT  G ++
Sbjct: 187 IVESGRIFVWGLQPDGRVLYA-------PKEIEFFMALPVVQVNAGSDYYVALTVSGAMF 239

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG  E+G+LG  DN +  +  P +V  L   ++V V+CG +H+VALT +G +F  G   
Sbjct: 240 VWGSNEYGQLGTSDNKE--RTTPAEVTTLHSLNVVHVACGHSHTVALTHEGRLFVCGSDS 297

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+LG GRKV +   M     +      G  V R      VACG  HTLA+
Sbjct: 298 CGQLGSGRKVPSQNTM-----LAVTEMLGTHVTR------VACGRCHTLAL 337



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 39/289 (13%)

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK----LIVRQVAAGGT 144
           V  Q  A+ +GG+  GQ G       D G I++   V+    AP     + VR +A G  
Sbjct: 23  VRRQLYAFGYGGD--GQLGNRGFLNGDDGNIVKTPQVVVG--APTSHDGVSVRAIATGER 78

Query: 145 HSVVLTREGHVWTWGQPWPPGDIKQ--------ISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           H++ L  +G VW+ G     G++ +           PV + G   +  IA G  HN+A+ 
Sbjct: 79  HTLFLADDGKVWSCGSN-ENGELGRGGCQEGSFTIYPVLLSGGVNIVQIAAGRAHNMAVA 137

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           +DG L+AWG+N +GQL    +   S  IP + +S    V +A G  H+ A+ + G ++ W
Sbjct: 138 DDGRLFAWGSNSHGQLAL-PSNITSTDIPKRVVSLTETVQVACGTDHTIAIVESGRIFVW 196

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G    GR+ +          P+++       +VQV+ G  + VALT  G +F +G  ++G
Sbjct: 197 GLQPDGRVLYA---------PKEIEFFMALPVVQVNAGSDYYVALTVSGAMFVWGSNEYG 247

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +LG         P EV        ++ + V        VACG  HT+A+
Sbjct: 248 QLGTSDNKERTTPAEV-----TTLHSLNVVH-------VACGHSHTVAL 284



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 111/256 (43%), Gaps = 40/256 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS------VVAGSRNSLAICDDGKT- 59
           + AWGS   GQL + +N       +     P +V S      V  G+ +++AI + G+  
Sbjct: 142 LFAWGSNSHGQLALPSN-------ITSTDIPKRVVSLTETVQVACGTDHTIAIVESGRIF 194

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   +    P ++       +VQ   G  + +A+   G  + WG NEYGQ G    
Sbjct: 195 VWGLQPDGRVLYAPKEIEFFMALPVVQVNAGSDYYVALTVSGAMFVWGSNEYGQLGT--- 251

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW-----TWGQPWPPGD 166
             D+  R    ++         L V  VA G +H+V LT EG ++     + GQ      
Sbjct: 252 -SDNKERTTPAEVTTLH----SLNVVHVACGHSHTVALTHEGRLFVCGSDSCGQLGSGRK 306

Query: 167 IKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   +  + V  +    V  +A G  H LAL   G ++A+G N  GQLG+G+ + +  P 
Sbjct: 307 VPSQNTMLAVTEMLGTHVTRVACGRCHTLALA-GGKMYAFGLNSSGQLGSGNVRSQVTPR 365

Query: 225 PVQGLSGLTLVDIAAG 240
           P+  L+   +V + AG
Sbjct: 366 PIDALTD--VVSVFAG 379



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 14/137 (10%)

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+++  IA G  H+  L DDG+V+  G  E+G LG G   + S  +   V L  G +IVQ
Sbjct: 67  GVSVRAIATGERHTLFLADDGKVWSCGSNENGELGRGGCQEGSFTI-YPVLLSGGVNIVQ 125

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++ G  H++A+  DG +F++G   HG+L     +T+    ++P  + +            
Sbjct: 126 IAAGRAHNMAVADDGRLFAWGSNSHGQLALPSNITS---TDIPKRVVSLTETVQ------ 176

Query: 351 IAKLVACGGRHTLAIVE 367
               VACG  HT+AIVE
Sbjct: 177 ----VACGTDHTIAIVE 189



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 18/130 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WGS E GQLG  +N+ER     V  L    V  V  G  +++A+  +G+       
Sbjct: 237 AMFVWGSNEYGQLGTSDNKERTTPAEVTTLHSLNVVHVACGHSHTVALTHEGRLFVCGSD 296

Query: 62  --------ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     +PSQ     V  +  T + + A G  H LA+   G+ YA+G N  GQ G 
Sbjct: 297 SCGQLGSGRKVPSQNTMLAVTEMLGTHVTRVACGRCHTLALAG-GKMYAFGLNSSGQLGS 355

Query: 109 EPERKDDTGR 118
              R   T R
Sbjct: 356 GNVRSQVTPR 365


>gi|444917320|ref|ZP_21237422.1| hypothetical protein D187_10036 [Cystobacter fuscus DSM 2262]
 gi|444711215|gb|ELW52165.1| hypothetical protein D187_10036 [Cystobacter fuscus DSM 2262]
          Length = 773

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 163/352 (46%), Gaps = 42/352 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           S+ AWGS   GQLG G  E R     V  L      +V  G+  S A+            
Sbjct: 417 SLWAWGSNHRGQLGDGTTETRTEPTRVSGLS--DAVAVSLGNDYSFALRADGTVWAWGWY 474

Query: 54  --CDDGKTKTENIPSQVNALSNTKIV----QAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
               DG + + + P  V  L++   +     AA G  H LAV   G  +AWG N  GQ G
Sbjct: 475 GLFADGTSTSRSTPGPVPGLTSITALSVAPNAATG--HALAVRVDGTVWAWGDNTSGQVG 532

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPG 165
                    G  LR+  + P +      V  VA G  HS  L ++G VW WG  Q    G
Sbjct: 533 N--------GTKLRQ--LAPIQVPDLTNVVAVATGSMHSFALRQDGTVWAWGDNQFGQLG 582

Query: 166 DIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQ 222
           D  ++   +P +V GL  V  IA GAFH LAL+ DG +WAWG N +GQLG G T   R  
Sbjct: 583 DGTRLGRLIPFQVPGLTNVVAIASGAFHTLALRADGTVWAWGYNWHGQLGDGSTSSFRPT 642

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V+GL+ ++   +AAG WH+ AL  DG V+ WGR   G+L   D     + VP +V  
Sbjct: 643 PARVEGLTDVSA--LAAGDWHTLALRTDGTVWAWGRNGSGQLA--DGTVEPRSVPTQVTG 698

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           + G   V +S G  +S+A   DG    +G     ++G G       P  VP+
Sbjct: 699 VKGR-AVALSAGADNSLARLADGTALGWGSNAFSKIGDGVSTVHAAPTRVPL 749



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 160/359 (44%), Gaps = 54/359 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG  + GQLG G          V  L+   V +V  GS +SLA+  DG        
Sbjct: 59  ALWAWGYNDFGQLGDGTANAHLTPIRVPGLQ--DVEAVANGSLHSLALRRDGTVWTWGDN 116

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                       T   P  + +L+N   + A+    H LA+   G  + WG N YGQ G 
Sbjct: 117 QFGQLGTGEPWVTHATPQHLPSLTNVAAIAASED--HSLALRRDGTVWVWGNNRYGQLG- 173

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                   G +L   ++ P   A    +  +A   +H + L  +G VW WG         
Sbjct: 174 ------GAGNVL---LLEPTHLAGLTDIAAIATSPSHRLALRADGTVWAWGSNQTGQLGD 224

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAF---------HNLALQEDGALWAWGNNEYGQLGTG 215
           G  +      +V  L  V  IA G           H+LAL+ DG +WAWG+N++GQLG G
Sbjct: 225 GTTESRGTVAQVTALTDVVAIAAGGTGSGTINKTGHSLALRRDGTVWAWGDNQFGQLGDG 284

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
             QPRS P  VQGL+   +V I+     S AL  DG V+ WG    G LG        + 
Sbjct: 285 TNQPRSTPARVQGLT--NVVSISGNSRSSLALRRDGTVWAWGDRMDGPLG---GTSGLQT 339

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            P +V  L G  ++ ++ GG  ++AL RDG ++ +G    G+LG G  + T   + VP+
Sbjct: 340 TPAQVQGLRG--VMAIAAGGRQALALRRDGTLWGWGDNRFGQLGTGSNLRT---VPVPL 393



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 178/383 (46%), Gaps = 60/383 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG  + GQLG G N+ R     V+ L    V S+   SR+SLA+  DG        
Sbjct: 269 TVWAWGDNQFGQLGDGTNQPRSTPARVQGLT--NVVSISGNSRSSLALRRDGTVWAWGDR 326

Query: 59  --------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   +  +  P+QV  L    ++  A GG   LA+   G  + WG N +GQ G   
Sbjct: 327 MDGPLGGTSGLQTTPAQVQGLRG--VMAIAAGGRQALALRRDGTLWGWGDNRFGQLG--- 381

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                TG  LR  + +P +     +   VA    H++ +  +G +W WG         G 
Sbjct: 382 -----TGSNLRT-VPVPLKDLGSEV--SVAFNSYHALAVRADGSLWAWGSNHRGQLGDGT 433

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            +  + P RV GL     +++G  ++ AL+ DG +WAWG   YG    G +  RS P PV
Sbjct: 434 TETRTEPTRVSGLSDAVAVSLGNDYSFALRADGTVWAWG--WYGLFADGTSTSRSTPGPV 491

Query: 227 QGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            GL+ +T + +A  A   H+ A+  DG V+ WG    G++G G   K  ++ P +V  L 
Sbjct: 492 PGLTSITALSVAPNAATGHALAVRVDGTVWAWGDNTSGQVGNGT--KLRQLAPIQVPDL- 548

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP--INIPAPRNA 342
             ++V V+ G  HS AL +DG ++++G    G+LG G ++    P +VP   N+ A    
Sbjct: 549 -TNVVAVATGSMHSFALRQDGTVWAWGDNQFGQLGDGTRLGRLIPFQVPGLTNVVA---- 603

Query: 343 GDGVDRRWIAKLVACGGRHTLAI 365
                       +A G  HTLA+
Sbjct: 604 ------------IASGAFHTLAL 614



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 175/392 (44%), Gaps = 75/392 (19%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
           ++ AWG   DG LG G +  +     V+ L    V ++ AG R +LA+  DG      +N
Sbjct: 319 TVWAWGDRMDGPLG-GTSGLQTTPAQVQGLR--GVMAIAAGGRQALALRRDGTLWGWGDN 375

Query: 64  IPSQVNALSNTKIV-----------QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---- 108
              Q+   SN + V             A   +H LAV   G  +AWG N  GQ G+    
Sbjct: 376 RFGQLGTGSNLRTVPVPLKDLGSEVSVAFNSYHALAVRADGSLWAWGSNHRGQLGDGTTE 435

Query: 109 ---------------EPERKDDTGRILRRDIVI--------------PQRCAP------- 132
                               +D    LR D  +                R  P       
Sbjct: 436 TRTEPTRVSGLSDAVAVSLGNDYSFALRADGTVWAWGWYGLFADGTSTSRSTPGPVPGLT 495

Query: 133 ---KLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKL 184
               L V   AA G H++ +  +G VW WG     Q      ++Q++ P++V  L  V  
Sbjct: 496 SITALSVAPNAATG-HALAVRVDGTVWAWGDNTSGQVGNGTKLRQLA-PIQVPDLTNVVA 553

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +A G+ H+ AL++DG +WAWG+N++GQLG G    R  P  V GL+   +V IA+G +H+
Sbjct: 554 VATGSMHSFALRQDGTVWAWGDNQFGQLGDGTRLGRLIPFQVPGLT--NVVAIASGAFHT 611

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL  DG V+ WG   HG+LG G    S +  P +V  L   D+  ++ G  H++AL  D
Sbjct: 612 LALRADGTVWAWGYNWHGQLGDGST-SSFRPTPARVEGL--TDVSALAAGDWHTLALRTD 668

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           G ++++GR   G+L  G    T +P  VP  +
Sbjct: 669 GTVWAWGRNGSGQLADG----TVEPRSVPTQV 696



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 125/271 (46%), Gaps = 44/271 (16%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LAVD  G  +AWG N++GQ G+                + P R      V  VA G  
Sbjct: 50  HSLAVDAHGALWAWGYNDFGQLGDGTANAH----------LTPIRVPGLQDVEAVANGSL 99

Query: 145 HSVVLTREGHVWTW----------GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           HS+ L R+G VWTW          G+PW        + P  +  L  V  IA    H+LA
Sbjct: 100 HSLALRRDGTVWTWGDNQFGQLGTGEPW-----VTHATPQHLPSLTNVAAIAASEDHSLA 154

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L+ DG +W WGNN YGQLG        +P  + GL+   +  IA    H  AL  DG V+
Sbjct: 155 LRRDGTVWVWGNNRYGQLGGAGNVLLLEPTHLAGLT--DIAAIATSPSHRLALRADGTVW 212

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT---------HSVALTRDG 305
            WG  + G+L  GD    S+    +V  L   D+V ++ GGT         HS+AL RDG
Sbjct: 213 AWGSNQTGQL--GDGTTESRGTVAQVTAL--TDVVAIAAGGTGSGTINKTGHSLALRRDG 268

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            ++++G    G+LG G    T QP   P  +
Sbjct: 269 TVWAWGDNQFGQLGDG----TNQPRSTPARV 295



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 146/332 (43%), Gaps = 49/332 (14%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N      DG       P +V  L + + V  A G  H LA+   G  + WG N++GQ G 
Sbjct: 66  NDFGQLGDGTANAHLTPIRVPGLQDVEAV--ANGSLHSLALRRDGTVWTWGDNQFGQLGT 123

Query: 109 -EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPW 162
            EP     T          PQ       V  +AA   HS+ L R+G VW WG     Q  
Sbjct: 124 GEPWVTHAT----------PQHLPSLTNVAAIAASEDHSLALRRDGTVWVWGNNRYGQLG 173

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G++  +  P  + GL  +  IA    H LAL+ DG +WAWG+N+ GQLG G T+ R  
Sbjct: 174 GAGNVLLLE-PTHLAGLTDIAAIATSPSHRLALRADGTVWAWGSNQTGQLGDGTTESRGT 232

Query: 223 PIPVQGLSGLTLVDIAAGGW---------HSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
              V  L+   +V IAAGG          HS AL  DG V+ WG  + G+LG G N   S
Sbjct: 233 VAQVTALT--DVVAIAAGGTGSGTINKTGHSLALRRDGTVWAWGDNQFGQLGDGTNQPRS 290

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
              P +V  L   ++V +S     S+AL RDG ++++G    G LG    + T      P
Sbjct: 291 --TPARVQGL--TNVVSISGNSRSSLALRRDGTVWAWGDRMDGPLGGTSGLQT-----TP 341

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             +   R              +A GGR  LA+
Sbjct: 342 AQVQGLRG----------VMAIAAGGRQALAL 363



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 20/219 (9%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPV 174
           D   P+R        ++A  G HS+ +   G +W WG      D  Q+          P+
Sbjct: 29  DAPFPERAWDAAAGNKLATQG-HSLAVDAHGALWAWGY----NDFGQLGDGTANAHLTPI 83

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT- 233
           RV GL+ V+ +A G+ H+LAL+ DG +W WG+N++GQLGTG  +P       Q L  LT 
Sbjct: 84  RVPGLQDVEAVANGSLHSLALRRDGTVWTWGDNQFGQLGTG--EPWVTHATPQHLPSLTN 141

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  IAA   HS AL  DG V+ WG   +G+LG   N     ++ +  +L    DI  ++ 
Sbjct: 142 VAAIAASEDHSLALRRDGTVWVWGNNRYGQLGGAGN----VLLLEPTHLAGLTDIAAIAT 197

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +H +AL  DG ++++G    G+LG G   + G   +V
Sbjct: 198 SPSHRLALRADGTVWAWGSNQTGQLGDGTTESRGTVAQV 236


>gi|195014693|ref|XP_001984062.1| GH15214 [Drosophila grimshawi]
 gi|193897544|gb|EDV96410.1| GH15214 [Drosophila grimshawi]
          Length = 1052

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 170/370 (45%), Gaps = 68/370 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+   GQLG+G  E+ + +                                   PS
Sbjct: 3   LYCWGNASHGQLGLGGIEDEQIL----------------------------------TPS 28

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++    ++ + Q A G  H L +   G+ YA G N+Y Q G E   K        R + I
Sbjct: 29  KMPWQPDSAVNQIACGHRHTLFLTASGKVYACGSNDYAQLGHELSSK--------RPLQI 80

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL-- 179
           P+      ++ Q+A G  HS+ LT  G V +WG     Q     D   + +P  V+ L  
Sbjct: 81  PELV--DCVITQIACGSRHSMALTEWGQVLSWGDNECGQLGHASDQDVVQLPKTVRALVS 138

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ---PIPVQGLSGLTLVD 236
           + V  IA G  H+LAL   G L+AWG+N YGQLG        Q   P+ +  L G+ +  
Sbjct: 139 KTVVQIACGNNHSLALTCCGELYAWGSNIYGQLGVKTPSELGQCNAPMLLTTLLGIPVRA 198

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           IA GG HS  ++    V+GWGR   G+LG   ND++++  P ++  L    +  V+CG  
Sbjct: 199 IACGGNHSFLISKSSAVFGWGRNNCGQLGL--NDETNRAYPTQLKTLRTLGVRFVACGDE 256

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
            SV LT +G +F+ G G +G+LG+G     G  M        PR   + +    I++ VA
Sbjct: 257 FSVFLTNEGGVFTCGAGAYGQLGHG---FCGNEM-------LPRMVMELMGST-ISQ-VA 304

Query: 357 CGGRHTLAIV 366
           CG RHTLA+V
Sbjct: 305 CGNRHTLAMV 314



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 14/117 (11%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           E+Y WG   HG+LG G  +    + P K+       + Q++CG  H++ LT  G +++ G
Sbjct: 2   ELYCWGNASHGQLGLGGIEDEQILTPSKMPWQPDSAVNQIACGHRHTLFLTASGKVYACG 61

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             D+ +LG+  ++++ +P+++P          + VD   +   +ACG RH++A+ EW
Sbjct: 62  SNDYAQLGH--ELSSKRPLQIP----------ELVD--CVITQIACGSRHSMALTEW 104



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 25/175 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ ++++  WG    GQLG+ +   R +   +K L    VR V  G   S+ + ++G   
Sbjct: 209 ISKSSAVFGWGRNNCGQLGLNDETNRAYPTQLKTLRTLGVRFVACGDEFSVFLTNEGGVF 268

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P  V  L  + I Q A G  H LA V  +GR Y +G    
Sbjct: 269 TCGAGAYGQLGHGFCGNEMLPRMVMELMGSTISQVACGNRHTLAMVPARGRIYGFGLGSS 328

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAP--------KLIVRQVAAGGTHSVVLT 150
           GQ G    +  +  +++    V P   A          +++RQ+ +GG  S+V T
Sbjct: 329 GQLGTRNTKSLNLPQMVIGPWVSPSGSALLQSSDAQIAVVIRQIFSGGDQSIVTT 383


>gi|449676621|ref|XP_004208667.1| PREDICTED: uncharacterized protein LOC101237479, partial [Hydra
           magnipapillata]
          Length = 896

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 21/239 (8%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQISVPVRVQGLE----QVKLIAVGAFH 191
           ++A G  H   +T    ++TWG+       +++   +P+R++ L     QV  +A G FH
Sbjct: 449 RIACGRNHIAFVTNNKELYTWGKECGGRKDNVQNTCLPMRMENLHNQGIQVVSVACGEFH 508

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            +AL E+G +++WG+NEYGQLG GDT+ R +P+ +  +S   +V +  G +H+ A+T D 
Sbjct: 509 TIALCEEG-VYSWGSNEYGQLGVGDTRTRYRPVLITHISSKQIVSVVCGAYHTLAITSDY 567

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           +VY WG G HG+LG    +  +++ P++++LL    ++Q + G  HS  LT   ++++FG
Sbjct: 568 KVYSWGWGVHGQLGLKSVE--NQLTPKQIDLLDSHKVIQAAAGYAHSAVLTSQRYVYTFG 625

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
              +G+LG G       P  V           D +    I  L++CG   T+AI E QT
Sbjct: 626 ADLYGQLGIGSHYKQVIPQLV-----------DSLTLDSIY-LISCGPFETIAISEDQT 672



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 144/319 (45%), Gaps = 49/319 (15%)

Query: 39  KVRSVVAGSRNSLAICDDG---------------KTKTENIPSQVNALSNTKIVQAAIGG 83
           +V SV  G  +++A+C++G                T+T   P  +  +S+ +IV    G 
Sbjct: 498 QVVSVACGEFHTIALCEEGVYSWGSNEYGQLGVGDTRTRYRPVLITHISSKQIVSVVCGA 557

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           +H LA+    + Y+WG   +GQ G +      T +  + D++   +      V Q AAG 
Sbjct: 558 YHTLAITSDYKVYSWGWGVHGQLGLKSVENQLTPK--QIDLLDSHK------VIQAAAGY 609

Query: 144 THSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQ 196
            HS VLT + +V+T     +GQ       KQ+ +P  V  L  + + LI+ G F  +A+ 
Sbjct: 610 AHSAVLTSQRYVYTFGADLYGQLGIGSHYKQV-IPQLVDSLTLDSIYLISCGPFETIAIS 668

Query: 197 EDGALWAWGNN-------------EYGQL---GTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           ED  ++ WG N             +YG+     T D   R  P  +Q      +  I  G
Sbjct: 669 EDQTIFCWGRNYHQFYICAKAESSKYGRKMASNTKDLNHRFYPETLQFQLQHPITQIFCG 728

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            WH   LT   +VY WG  + G+LG    +K  +  P+ V  L    I+ V+ G   SVA
Sbjct: 729 NWHYIILTSVNQVYTWGYNDCGQLG--HYNKIDQSAPRLVKALIRRAIIGVAVGAEFSVA 786

Query: 301 LTRDGHIFSFGRGDHGRLG 319
              D +I ++GR D G++G
Sbjct: 787 FDADDNIMAWGRNDEGKIG 805



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 147/328 (44%), Gaps = 50/328 (15%)

Query: 41  RSVVAGSRNSLAICDDGK---------------TKTENIPSQVNALSN--TKIVQAAIGG 83
           R+ +A  RN +A   + K                +   +P ++  L N   ++V  A G 
Sbjct: 447 RARIACGRNHIAFVTNNKELYTWGKECGGRKDNVQNTCLPMRMENLHNQGIQVVSVACGE 506

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           +H +A+ ++G  Y+WG NEYGQ G       DT R   R ++I    + +++   V  G 
Sbjct: 507 FHTIALCEEG-VYSWGSNEYGQLG-----VGDT-RTRYRPVLITHISSKQIV--SVVCGA 557

Query: 144 THSVVLTREGHVWTWGQPW-PPGDIKQISV-----PVRVQGLEQVKLI--AVGAFHNLAL 195
            H++ +T +  V++WG  W   G +   SV     P ++  L+  K+I  A G  H+  L
Sbjct: 558 YHTLAITSDYKVYSWG--WGVHGQLGLKSVENQLTPKQIDLLDSHKVIQAAAGYAHSAVL 615

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
                ++ +G + YGQLG G    +  P  V  L+  ++  I+ G + + A+++D  ++ 
Sbjct: 616 TSQRYVYTFGADLYGQLGIGSHYKQVIPQLVDSLTLDSIYLISCGPFETIAISEDQTIFC 675

Query: 256 WGRGEHG--------------RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           WGR  H               ++     D + +  P+ +       I Q+ CG  H + L
Sbjct: 676 WGRNYHQFYICAKAESSKYGRKMASNTKDLNHRFYPETLQFQLQHPITQIFCGNWHYIIL 735

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           T    ++++G  D G+LG+  K+    P
Sbjct: 736 TSVNQVYTWGYNDCGQLGHYNKIDQSAP 763



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 126/299 (42%), Gaps = 50/299 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WGS E GQLG+G+   R    ++  +   ++ SVV G+ ++LAI  D K  +     
Sbjct: 517 VYSWGSNEYGQLGVGDTRTRYRPVLITHISSKQIVSVVCGAYHTLAITSDYKVYSWGWGV 576

Query: 62  ---------EN--IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                    EN   P Q++ L + K++QAA G  H   +  Q   Y +G + YGQ G   
Sbjct: 577 HGQLGLKSVENQLTPKQIDLLDSHKVIQAAAGYAHSAVLTSQRYVYTFGADLYGQLGIGS 636

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI--VRQVAAGGTHSVVLTREGHVWTWGQPW------ 162
             K           VIPQ      +  +  ++ G   ++ ++ +  ++ WG+ +      
Sbjct: 637 HYKQ----------VIPQLVDSLTLDSIYLISCGPFETIAISEDQTIFCWGRNYHQFYIC 686

Query: 163 --------------PPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGN 206
                            D+     P  +Q   Q  +  I  G +H + L     ++ WG 
Sbjct: 687 AKAESSKYGRKMASNTKDLNHRFYPETLQFQLQHPITQIFCGNWHYIILTSVNQVYTWGY 746

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           N+ GQLG  +   +S P  V+ L    ++ +A G   S A   D  +  WGR + G++G
Sbjct: 747 NDCGQLGHYNKIDQSAPRLVKALIRRAIIGVAVGAEFSVAFDADDNIMAWGRNDEGKIG 805


>gi|391339113|ref|XP_003743897.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like
            [Metaseiulus occidentalis]
          Length = 4496

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 177/401 (44%), Gaps = 66/401 (16%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
            I  WG    GQLG     + +   +  AL   +   +V G +   A+  DGK        
Sbjct: 3621 IHGWGHNHRGQLGGVEGAKVKTATICDALTALRPVQIVGGEQTLFALTSDGKVYATGYGA 3680

Query: 59   --------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                    T++ + P+ +  L +  + Q A+  GG HCLA+   G  ++WG  + G+ G 
Sbjct: 3681 GGRLGIGGTESVSTPTLIETLQHVIVTQVAVNSGGKHCLALTSSGDVFSWGEGDDGKLGH 3740

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ- 160
              +              + +R  PKLI       V  VA GG HS  +T  G ++TWG+ 
Sbjct: 3741 GSK-------------ALCER--PKLIESLRDKHVVSVACGGAHSACITASGELYTWGKG 3785

Query: 161  ---PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLG 213
                   GD +    P +V+ L    ++ V    G    L +  DG +W+WG+ +YG+LG
Sbjct: 3786 RYGRLGHGDSEDQLKPKKVEELAGHNVLDVACGSGDAQTLCVSRDGLVWSWGDGDYGKLG 3845

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             G +     P  +  L    ++ +  G   S ALT  G VY WG+G++ RLG G  D   
Sbjct: 3846 RGGSDGCKFPQKIDSLQNAGVIKVECGSQFSVALTAAGVVYTWGKGDYHRLGHGSEDHVR 3905

Query: 274  KMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  PQ V   L G+ ++QV+ G  H VA T  G +F++G  D G+LG G      +P  V
Sbjct: 3906 R--PQAVQGALQGKRVIQVAVGSLHCVACTDSGEVFTWGDNDEGQLGDGSTNAIQRPKLV 3963

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                      G  ++R      VACG  HT   V W T +S
Sbjct: 3964 ------ASLKGKKMNR------VACGSAHT---VSWSTSKS 3989



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 187/391 (47%), Gaps = 64/391 (16%)

Query: 7    IIAWGSGEDGQLG--IGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---- 59
            +  WG  +  QLG   G+  +E ++  V+  L+P    ++  GS++   +  DGK     
Sbjct: 2654 VFVWGLNDKDQLGGLKGSKIKEPKFSEVISNLKPM---NIAGGSKSLFIVSHDGKVFACG 2710

Query: 60   ----------KTENI--PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                       + N+  P  +  LS   I + A+  GG H LA+   GR ++WG  E G+
Sbjct: 2711 EGTNGRLGLGHSHNVAQPKPLTDLSPYFIKKVAVHSGGRHALALTIDGRVFSWGEGEDGK 2770

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             G   +   D     R  +V   +C     +R VA G +HS  +T  G ++TWG     G
Sbjct: 2771 LGHGNKISYD-----RPKLVESLKCKR---IRDVACGSSHSAAVTSSGELYTWGS----G 2818

Query: 166  DIKQI----SVP------VRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLG 213
            +  ++    +VP      VR    E+V  +A G+     LAL E   +++WG+ ++G+LG
Sbjct: 2819 EYGRLGHGDNVPQLKPKQVRALSHERVVQVACGSRDAQTLALTERHWVYSWGDGDFGKLG 2878

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             G +   S P  V+ L+   ++ +  G   S AL+ +G+V+ WG+G++ RLG G +  S 
Sbjct: 2879 KGGSDGSSLPQNVETLNSQQVIQVECGAQFSLALSKNGKVWTWGKGDYFRLGHGSD--SH 2936

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
               PQ V  LA ++++QVS G  H +A+T  G ++++G  DHG+ G G      +P  V 
Sbjct: 2937 VRWPQVVEELADKNVIQVSVGALHCIAVTDRGEVYAWGDNDHGQQGNGNTTVNRKPAIVR 2996

Query: 334  INIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              + A  N             VACG  H++A
Sbjct: 2997 -GLEAITN-------------VACGSSHSVA 3013



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 153/332 (46%), Gaps = 52/332 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKTKT--- 61
            + A G G +G+LG+G++        +  L PY ++ V   +G R++LA+  DG+  +   
Sbjct: 2706 VFACGEGTNGRLGLGHSHNVAQPKPLTDLSPYFIKKVAVHSGGRHALALTIDGRVFSWGE 2765

Query: 62   -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          + P  V +L   +I   A G  H  AV   G  Y WG  EYG+ G 
Sbjct: 2766 GEDGKLGHGNKISYDRPKLVESLKCKRIRDVACGSSHSAAVTSSGELYTWGSGEYGRLGH 2825

Query: 109  ---EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWP 163
                P+ K    R L  + V+           QVA G     ++ LT    V++WG    
Sbjct: 2826 GDNVPQLKPKQVRALSHERVV-----------QVACGSRDAQTLALTERHWVYSWGD--- 2871

Query: 164  PGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
             GD  ++        S+P  V+ L  +QV  +  GA  +LAL ++G +W WG  +Y +LG
Sbjct: 2872 -GDFGKLGKGGSDGSSLPQNVETLNSQQVIQVECGAQFSLALSKNGKVWTWGKGDYFRLG 2930

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             G       P  V+ L+   ++ ++ G  H  A+TD GEVY WG  +HG+ G G+   + 
Sbjct: 2931 HGSDSHVRWPQVVEELADKNVIQVSVGALHCIAVTDRGEVYAWGDNDHGQQGNGNTTVNR 2990

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            K  P  V  L  E I  V+CG +HSVA +  G
Sbjct: 2991 K--PAIVRGL--EAITNVACGSSHSVAWSSTG 3018



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 28/217 (12%)

Query: 153  GHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYG 210
            GH     QP P  D+    +          K +AV  G  H LAL  DG +++WG  E G
Sbjct: 2720 GHSHNVAQPKPLTDLSPYFI----------KKVAVHSGGRHALALTIDGRVFSWGEGEDG 2769

Query: 211  QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
            +LG G+     +P  V+ L    + D+A G  HS A+T  GE+Y WG GE+GRLG GDN 
Sbjct: 2770 KLGHGNKISYDRPKLVESLKCKRIRDVACGSSHSAAVTSSGELYTWGSGEYGRLGHGDN- 2828

Query: 271  KSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
               ++ P++V  L+ E +VQV+CG     ++ALT    ++S+G GD G+LG G    +  
Sbjct: 2829 -VPQLKPKQVRALSHERVVQVACGSRDAQTLALTERHWVYSWGDGDFGKLGKGGSDGSSL 2887

Query: 329  PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            P  V           + ++ + + + V CG + +LA+
Sbjct: 2888 PQNV-----------ETLNSQQVIQ-VECGAQFSLAL 2912



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 147/348 (42%), Gaps = 79/348 (22%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  + +WG G+DG+LG G                            S A+C+     
Sbjct: 3721 LTSSGDVFSWGEGDDGKLGHG----------------------------SKALCER---- 3748

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTG 117
                P  + +L +  +V  A GG H   +   G  Y WG   YG+ G    E + K    
Sbjct: 3749 ----PKLIESLRDKHVVSVACGGAHSACITASGELYTWGKGRYGRLGHGDSEDQLKPKKV 3804

Query: 118  RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
              L    V+   C          +G   ++ ++R+G VW+WG     GD  ++       
Sbjct: 3805 EELAGHNVLDVACG---------SGDAQTLCVSRDGLVWSWGD----GDYGKLGRGGSDG 3851

Query: 171  -SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
               P ++  L+   +I V  G+  ++AL   G ++ WG  +Y +LG G      +P  VQ
Sbjct: 3852 CKFPQKIDSLQNAGVIKVECGSQFSVALTAAGVVYTWGKGDYHRLGHGSEDHVRRPQAVQ 3911

Query: 228  G-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            G L G  ++ +A G  H  A TD GEV+ WG  + G+LG G  +   +  P+ V  L G+
Sbjct: 3912 GALQGKRVIQVAVGSLHCVACTDSGEVFTWGDNDEGQLGDGSTNAIQR--PKLVASLKGK 3969

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             + +V+CG  H+V+       +S  +  H       K  T  P ++P+
Sbjct: 3970 KMNRVACGSAHTVS-------WSTSKSAH-------KTVTQLPTQIPL 4003



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 56/188 (29%)

Query: 199  GALWAWGNNEYGQLG----------------------------------TGD-------- 216
            G +  WG+N  GQLG                                  T D        
Sbjct: 3619 GVIHGWGHNHRGQLGGVEGAKVKTATICDALTALRPVQIVGGEQTLFALTSDGKVYATGY 3678

Query: 217  ----------TQPRSQPIPVQGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRL 264
                      T+  S P  ++ L  + +  +A  +GG H  ALT  G+V+ WG G+ G+L
Sbjct: 3679 GAGGRLGIGGTESVSTPTLIETLQHVIVTQVAVNSGGKHCLALTSSGDVFSWGEGDDGKL 3738

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            G G      +  P+ +  L  + +V V+CGG HS  +T  G ++++G+G +GRLG+G   
Sbjct: 3739 GHGSKALCER--PKLIESLRDKHVVSVACGGAHSACITASGELYTWGKGRYGRLGHGDSE 3796

Query: 325  TTGQPMEV 332
               +P +V
Sbjct: 3797 DQLKPKKV 3804



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 39/251 (15%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICD--- 55
            + S+  +  WGSGE G+LG G+N  +     V+AL   +V  V  GSR+  +LA+ +   
Sbjct: 2806 VTSSGELYTWGSGEYGRLGHGDNVPQLKPKQVRALSHERVVQVACGSRDAQTLALTERHW 2865

Query: 56   -------------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G +   ++P  V  L++ +++Q   G    LA+   G+ + WG  +
Sbjct: 2866 VYSWGDGDFGKLGKGGSDGSSLPQNVETLNSQQVIQVECGAQFSLALSKNGKVWTWGKGD 2925

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R   V+ +     +I  QV+ G  H + +T  G V+ WG   
Sbjct: 2926 YFRLGHGSDSH------VRWPQVVEELADKNVI--QVSVGALHCIAVTDRGEVYAWGDND 2977

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA---------LWAWGNNEY 209
                  G+      P  V+GLE +  +A G+ H++A    G          L+    +  
Sbjct: 2978 HGQQGNGNTTVNRKPAIVRGLEAITNVACGSSHSVAWSSTGTSPQKLHDPILFPVVRDPL 3037

Query: 210  GQLGTGDTQPR 220
            G+    D QPR
Sbjct: 3038 GETLLCDDQPR 3048


>gi|410211612|gb|JAA03025.1| hect domain and RLD 6 [Pan troglodytes]
          Length = 1020

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 144/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  TVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 68/328 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLTVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L+  KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS-- 207

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEY 209
                 Q+++  R   ++  K ++VGA  NL              L +DG ++ +G+N  
Sbjct: 208 --NSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRS 265

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRGEHGRLGFGD 268
           GQLG   T  +  P  V+ + GL +  I  G +H+ A     G+V  +G G        D
Sbjct: 266 GQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLAYVHTTGQVVSFGHGP------SD 318

Query: 269 NDKSSKMVPQKVN-----LLAGEDIVQV 291
             K +       N     L++ ED+V V
Sbjct: 319 TSKPTHSEALTENFDISCLISAEDLVDV 346



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLTVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 46/186 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  -------------KTENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           N+P Q N      AL N  +V  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTREGH 154
           N  GQ G  P                P++  P+L+      V Q+  G  H++      +
Sbjct: 263 NRSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGSYHTL-----AY 302

Query: 155 VWTWGQ 160
           V T GQ
Sbjct: 303 VHTTGQ 308


>gi|345323388|ref|XP_001508293.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4
           [Ornithorhynchus anatinus]
          Length = 1006

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 133/236 (56%), Gaps = 22/236 (9%)

Query: 139 VAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFH 191
           V+ G  H++ L  +G V+ WG     Q   PG  + I VP  ++ L  ++++ V  G +H
Sbjct: 38  VSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTEECIRVPRNIKSLSDIQIVQVSCGYYH 97

Query: 192 NLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL +   +++WG N+YGQLG G + + ++ P  ++ L G+  + IAAGG HS  LT  
Sbjct: 98  SLALSKGSEVFSWGQNKYGQLGLGFEFKKQTSPQLIKSLLGIPFMQIAAGGAHSFVLTLS 157

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+ ALT++G +F+F
Sbjct: 158 GAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTF 215

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           G G +G+LG+    +T   +        PR   + +    I   VACG +HT A V
Sbjct: 216 GAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQVACGRQHTSAFV 259



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 152/313 (48%), Gaps = 28/313 (8%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG----EEPERKDDTGRILRR 122
           QV AL    IV  + G  H LA++D+G+ YAWG +  GQ G    EE  R       + R
Sbjct: 26  QVVALDAQNIVAVSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTEECIR-------VPR 78

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-----GDIKQISVPVRVQ 177
           +I    +    + + QV+ G  HS+ L++   V++WGQ          + K+ + P  ++
Sbjct: 79  NI----KSLSDIQIVQVSCGYYHSLALSKGSEVFSWGQNKYGQLGLGFEFKKQTSPQLIK 134

Query: 178 GLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  +    IA G  H+  L   GA++ WG N++GQLG  D   R  P  ++ L    +V
Sbjct: 135 SLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIV 194

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            I  G  H+ ALT +G V+ +G G +G+L  G N  S ++ P+KV  L G  + QV+CG 
Sbjct: 195 YICCGEDHTAALTKEGGVFTFGAGGYGQL--GHNSTSHEINPRKVFELMGSIVTQVACGR 252

Query: 296 THSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN-IPAPRNAGDGVD--RRWI 351
            H+ A     G I+SFG G +G+LG G       P  V  N  P        +D  + + 
Sbjct: 253 QHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYSEQDPSNIDGEQYYC 312

Query: 352 AKLVACGGRHTLA 364
            K +  GG  + +
Sbjct: 313 VKRIFSGGDQSFS 325



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 133/282 (47%), Gaps = 38/282 (13%)

Query: 22  NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK--------------TEN---I 64
           +++ERE V    AL+   + +V  G  ++LA+ D G+                TE    +
Sbjct: 20  DSQEREQVV---ALDAQNIVAVSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTEECIRV 76

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  + +LS+ +IVQ + G +H LA+      ++WG N+YGQ G   E K  T   L + +
Sbjct: 77  PRNIKSLSDIQIVQVSCGYYHSLALSKGSEVFSWGQNKYGQLGLGFEFKKQTSPQLIKSL 136

Query: 125 V-IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           + IP          Q+AAGG HS VLT  G ++ WG+         D     VP  ++ L
Sbjct: 137 LGIP--------FMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSL 188

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
              K++ +  G  H  AL ++G ++ +G   YGQLG   T     P  V  L G  +  +
Sbjct: 189 RSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQV 248

Query: 238 AAGGWHSTALT-DDGEVYGWGRGEHGRLGFG--DNDKSSKMV 276
           A G  H++A     G +Y +G G +G+LG G   N KS   V
Sbjct: 249 ACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTV 290



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + + +WG  + GQLG+G                                    + K
Sbjct: 101 LSKGSEVFSWGQNKYGQLGLG-----------------------------------FEFK 125

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 126 KQTSPQLIKSLLGIPFMQIAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL 185

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 186 KS--LRSQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 236

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  +A G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 237 VFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 292



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           ++V  L  ++IV VSCG  H++AL   G ++++G    G+LG                I 
Sbjct: 25  EQVVALDAQNIVAVSCGDAHTLALNDKGQVYAWGLDTDGQLGLPGTEEC---------IR 75

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAI 365
            PRN     D + +   V+CG  H+LA+
Sbjct: 76  VPRNIKSLSDIQIVQ--VSCGYYHSLAL 101


>gi|114595105|ref|XP_001160851.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
           [Pan troglodytes]
          Length = 1020

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 144/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  TVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 137/328 (41%), Gaps = 68/328 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLTVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L+  KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS-- 207

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEY 209
                 Q+++  R   ++  K ++VGA  NL              L +DG ++ +G+N  
Sbjct: 208 --NSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRS 265

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRGEHGRLGFGD 268
           GQLG   T  +  P  V+ + GL +  I  G +H+ A     G+V  +G G        D
Sbjct: 266 GQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLAYVHTTGQVVSFGHGP------SD 318

Query: 269 NDKSSKMVPQKVN-----LLAGEDIVQV 291
             K +       N     L++ ED+V V
Sbjct: 319 TSKPTHSEALTENFDISCLISAEDLVDV 346



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLTVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 44.3 bits (103), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 46/186 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  -------------KTENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           N+P Q N      AL N  +V  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTREGH 154
           N  GQ G  P                P++  P+L+      V Q+  G  H++      +
Sbjct: 263 NRSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGSYHTL-----AY 302

Query: 155 VWTWGQ 160
           V T GQ
Sbjct: 303 VHTTGQ 308


>gi|440904419|gb|ELR54939.1| Putative E3 ubiquitin-protein ligase HERC6, partial [Bos grunniens
           mutus]
          Length = 1019

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 153/318 (48%), Gaps = 49/318 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDDTGRI 119
           QV A  NT ++QAA G  H L +   G   + G N  GQ G       E+PER       
Sbjct: 17  QVCAGGNT-LLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPER------- 68

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS-VPV 174
                 IP      L V  V+ G  HS+ +  +G V+ WG         G+ K+ + +P 
Sbjct: 69  ------IP--ALETLHVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPK 120

Query: 175 RVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSG 231
           +++ L  +K+I  A G +H++AL EDG +++WG N +GQLG G   P ++ P  V+ L G
Sbjct: 121 KIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKEFPSQASPQRVRSLEG 180

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQ 290
           + L  +AAGG HS AL+  G  +GWG    G+L   G+N    +  P  +  L    +V 
Sbjct: 181 IPLAQVAAGGHHSFALSLSGTSFGWGSNNAGQLALSGNNAPVQRYKPVSIGALKTLGVVS 240

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           +SCG  H+  LT+DG +F+FG   +G+LG+                P     G  +  R 
Sbjct: 241 ISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD---------------PTAEKRGPQLVERI 285

Query: 351 --IAKLVACGGRHTLAIV 366
             +   + CG  HTLA +
Sbjct: 286 EGLVSQIDCGSDHTLAYI 303



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 57/297 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ + G    GQLG       E    + ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLHVALVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +T  IP ++  L+  KI+Q A G +H +A+ + G+ ++WG N +
Sbjct: 98  AWGAASEGQLGIGEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSF 203

Query: 157 TWGQPWPPGDIKQISV-----------PVRVQGLEQVKLIAV--GAFHNLALQEDGALWA 203
            WG      +  Q+++           PV +  L+ + ++++  G  H   L +DG ++ 
Sbjct: 204 GWGS----NNAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFT 259

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           +G+N YGQLG   T  +  P  V+ + GL +  I  G  H+ A +   G+V  +GRG
Sbjct: 260 FGDNSYGQLGHDPTAEKRGPQLVERIEGL-VSQIDCGSDHTLAYIYTTGQVVSFGRG 315


>gi|348666178|gb|EGZ06006.1| hypothetical protein PHYSODRAFT_533148 [Phytophthora sojae]
          Length = 429

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 174/376 (46%), Gaps = 65/376 (17%)

Query: 1   MASTTSIIAWGSGEDGQLG--------IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLA 52
            ++ +S+  WG+G  GQLG        I N  E     +++A E   +  V  G+ +S A
Sbjct: 38  FSTQSSVYTWGNGTLGQLGHGPVVKSGIRNAYEELTPKLLEAFEGKAITHVEFGASHSAA 97

Query: 53  ICDDGK-----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA 95
           I +DGK                 ++ E +P +V AL   KIV  + G +   AVD  G+ 
Sbjct: 98  IDEDGKLYVWGSNEYSKLGLGESSEMETLPREVEALKGVKIVDVSCGDYFTAAVDADGKM 157

Query: 96  YAWG-----GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
           Y+WG         G  G    + + T R+L     +  +  P L V     G  H+V L+
Sbjct: 158 YSWGWGGSTMKGAGGLGHAGGKDEPTPRLL---TTLVDQGVPILTVE---CGEFHTVALS 211

Query: 151 REGHVWTWGQPWP------PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAW 204
           ++G +W WG            D  ++  P+     + V  IA G   + AL ++G L++W
Sbjct: 212 KDGEIWAWGNGEYGRLGNGESDTCEVPEPIEFFSKDNVVSIAAGRDFSFALTDNGELYSW 271

Query: 205 GNNEYGQLGTGD------TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G N   QLG G           S P+ V+  +GL++  IAAG  H+ A+TDDG +Y WG 
Sbjct: 272 GGNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLSVKQIAAGYDHAAAVTDDGRLYMWG- 330

Query: 259 GEHGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
                         SK+   P ++  +    +VQV+CG  ++VAL+ +G +F+FG+G   
Sbjct: 331 --------------SKIWIEPHEMTAVNEYKMVQVACGRQYTVALSENGEVFTFGKGSSN 376

Query: 317 RLGYGRKVTTGQPMEV 332
            LG+G +    QP+++
Sbjct: 377 CLGHGDRKNQLQPVQI 392



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 22/227 (9%)

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ---------PWPPGDIKQIS---VPVRVQGLE-- 180
           + R +A         + +  V+TWG          P     I+       P  ++  E  
Sbjct: 24  VARSLATRSALQHAFSTQSSVYTWGNGTLGQLGHGPVVKSGIRNAYEELTPKLLEAFEGK 83

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAA 239
            +  +  GA H+ A+ EDG L+ WG+NEY +LG G++ +  + P  V+ L G+ +VD++ 
Sbjct: 84  AITHVEFGASHSAAIDEDGKLYVWGSNEYSKLGLGESSEMETLPREVEALKGVKIVDVSC 143

Query: 240 GGWHSTALTDDGEVYGWGRG---EHGRLGFGDNDKSSKMVPQKVNLLA--GEDIVQVSCG 294
           G + + A+  DG++Y WG G     G  G G      +  P+ +  L   G  I+ V CG
Sbjct: 144 GDYFTAAVDADGKMYSWGWGGSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGVPILTVECG 203

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
             H+VAL++DG I+++G G++GRLG G   T   P   PI   +  N
Sbjct: 204 EFHTVALSKDGEIWAWGNGEYGRLGNGESDTCEVPE--PIEFFSKDN 248



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 11/194 (5%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G++ T  +P  +   S   +V  A G     A+ D G  Y+WGGN   Q G       D
Sbjct: 229 NGESDTCEVPEPIEFFSKDNVVSIAAGRDFSFALTDNGELYSWGGNSQNQLGIGGGLAMD 288

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-W-PPGDIKQISVP 173
              I    I +       L V+Q+AAG  H+  +T +G ++ WG   W  P ++  ++  
Sbjct: 289 VYNI--ESIPVLVEAFNGLSVKQIAAGYDHAAAVTDDGRLYMWGSKIWIEPHEMTAVNEY 346

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
             VQ       +A G  + +AL E+G ++ +G      LG GD + + QP+ ++ L+ + 
Sbjct: 347 KMVQ-------VACGRQYTVALSENGEVFTFGKGSSNCLGHGDRKNQLQPVQIEALADVN 399

Query: 234 LVDIAAGGWHSTAL 247
           +  I+ G +H  A+
Sbjct: 400 ITSISCGDYHMGAI 413


>gi|159038541|ref|YP_001537794.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157917376|gb|ABV98803.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 561

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 119/383 (31%), Positives = 164/383 (42%), Gaps = 44/383 (11%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------------ 55
           +AWG   + QLG G    R     V       + +V AG  +SLA+              
Sbjct: 63  LAWGDNAESQLGDGTTTNRSTPVTVDLPADTTITAVAAGQGHSLAVTSAGTVLAWGANSS 122

Query: 56  ----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T   + P  V+  + T +   A G  H LAV   G   AWG N  GQ  +   
Sbjct: 123 GQLGDGTTTPRSTPVAVDLPAGTTVTAVAAGDRHSLAVTSTGTVLAWGLNVTGQLYDGTT 182

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
             + +  I+   + +P        V  VAAG  HS+ LT  G V  WG         G  
Sbjct: 183 TTNSSTPIV---VDLPAGT----TVTAVAAGNAHSLALTSAGTVLAWGANSSGQLGDGTT 235

Query: 168 KQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
              S PV V    G     + A  + H+LA+   G + AWG N  GQLG G    RS P+
Sbjct: 236 TPRSTPVAVDLPAGTTISTIAASSSSHSLAVTSTGTMLAWGANFTGQLGDGTITNRSTPV 295

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V   +G T+  +A G  HS A+T  G +  WG    G+LG G    SS   P  V+L A
Sbjct: 296 AVDLPAGTTVTAVATGSGHSLAVTSTGTMLAWGGNGSGQLGDGSTTSSST--PVAVDLPA 353

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
           G  +  V+ G  HS+ALT  G + ++G    G+LG G   T+ +   +  ++PA      
Sbjct: 354 GTTVTAVAGGAGHSLALTSTGTMLAWGFNTSGQLGDG--TTSNRSTPIATDLPA------ 405

Query: 345 GVDRRWIAKLVACGGRHTLAIVE 367
             D    A  +A G  H+LA+V 
Sbjct: 406 --DTTITA--IAGGSFHSLAVVP 424



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 141/332 (42%), Gaps = 48/332 (14%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T   + P  V+  ++T I   A G  H LAV   G   AWG N  GQ G+       
Sbjct: 75  DGTTTNRSTPVTVDLPADTTITAVAAGQGHSLAVTSAGTVLAWGANSSGQLGD------- 127

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQI 170
            G    R   +         V  VAAG  HS+ +T  G V  WG     Q +        
Sbjct: 128 -GTTTPRSTPVAVDLPAGTTVTAVAAGDRHSLAVTSTGTVLAWGLNVTGQLYDGTTTTNS 186

Query: 171 SVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           S P+ V       V  +A G  H+LAL   G + AWG N  GQLG G T PRS P+    
Sbjct: 187 STPIVVDLPAGTTVTAVAAGNAHSLALTSAGTVLAWGANSSGQLGDGTTTPRSTPV---- 242

Query: 229 LSGLTLVDIAAGGW----------HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                 VD+ AG            HS A+T  G +  WG    G+LG  D   +++  P 
Sbjct: 243 -----AVDLPAGTTISTIAASSSSHSLAVTSTGTMLAWGANFTGQLG--DGTITNRSTPV 295

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            V+L AG  +  V+ G  HS+A+T  G + ++G    G+LG G   ++  P+ V  ++PA
Sbjct: 296 AVDLPAGTTVTAVATGSGHSLAVTSTGTMLAWGGNGSGQLGDGSTTSSSTPVAV--DLPA 353

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
                           VA G  H+LA+    T
Sbjct: 354 ----------GTTVTAVAGGAGHSLALTSTGT 375



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 137/319 (42%), Gaps = 32/319 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +++AWG+   GQLG G    R     V       V +V AG R+SLA+            
Sbjct: 113 TVLAWGANSSGQLGDGTTTPRSTPVAVDLPAGTTVTAVAAGDRHSLAVTSTGTVLAWGLN 172

Query: 56  ------DGKTKT-ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                 DG T T  + P  V+  + T +   A G  H LA+   G   AWG N  GQ G+
Sbjct: 173 VTGQLYDGTTTTNSSTPIVVDLPAGTTVTAVAAGNAHSLALTSAGTVLAWGANSSGQLGD 232

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                       R   V     A   I    A+  +HS+ +T  G +  WG  +      
Sbjct: 233 GTTTP-------RSTPVAVDLPAGTTISTIAASSSSHSLAVTSTGTMLAWGANFTGQLGD 285

Query: 165 GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G I   S PV V       V  +A G+ H+LA+   G + AWG N  GQLG G T   S 
Sbjct: 286 GTITNRSTPVAVDLPAGTTVTAVATGSGHSLAVTSTGTMLAWGGNGSGQLGDGSTTSSST 345

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V   +G T+  +A G  HS ALT  G +  WG    G+L  GD   S++  P   +L
Sbjct: 346 PVAVDLPAGTTVTAVAGGAGHSLALTSTGTMLAWGFNTSGQL--GDGTTSNRSTPIATDL 403

Query: 283 LAGEDIVQVSCGGTHSVAL 301
            A   I  ++ G  HS+A+
Sbjct: 404 PADTTITAIAGGSFHSLAV 422



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V G++ +    + A G  S A    G    WG     +L  GD   +++  P  V+L A 
Sbjct: 35  VLGVTSVGAAPVLAQGVPSAAAGPPGTGLAWGDNAESQL--GDGTTTNRSTPVTVDLPAD 92

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             I  V+ G  HS+A+T  G + ++G    G+LG G    T  P   P+ +  P  AG  
Sbjct: 93  TTITAVAAGQGHSLAVTSAGTVLAWGANSSGQLGDG----TTTPRSTPVAVDLP--AGTT 146

Query: 346 VDRRWIAKLVACGGRHTLAIVEWQT 370
           V        VA G RH+LA+    T
Sbjct: 147 V------TAVAAGDRHSLAVTSTGT 165


>gi|390359737|ref|XP_003729552.1| PREDICTED: E3 ubiquitin-protein ligase HERC2, partial
            [Strongylocentrotus purpuratus]
          Length = 4064

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 180/396 (45%), Gaps = 57/396 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +    +++L   +   +V G +   A+  DGK       
Sbjct: 3182 TIYGWGHNHRGQLGGIEGAKVKVPTAIESLTSLRPIQIVGGEQTLFAVTADGKLYATGYG 3241

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T + + P+ + ++ +  I + A+  GG H LA+  +G  Y+WG  E G+ G
Sbjct: 3242 ASGRLGIGGTDSVSTPTLLESIQHVHIKKVAVNSGGKHALALSVEGEVYSWGEGEDGKLG 3301

Query: 108  EEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
                 + D  R+   LR   VI            +A GG HS  +T  G ++TWG+    
Sbjct: 3302 HGNRTQCDRPRVIESLRGKEVI-----------DIACGGAHSACVTSSGELYTWGKGRYG 3350

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                GD +    P     L+  ++I V    G    L + +D  +W+WG+ +YG+LG G 
Sbjct: 3351 RLGHGDSEDQLRPKMADALKGYRVIDVACGSGDSQTLCISDDDNVWSWGDGDYGKLGRGG 3410

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +     P  V  LS + +  +  G   S ALT  G VY WG+G++ RLG G +D   +  
Sbjct: 3411 SDGCKVPQKVDALSSIGVCKVECGSQFSIALTKSGCVYTWGKGDYHRLGHGSDDHVRR-- 3468

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            P+KV  L G+ I+ ++ G  H VA +  G ++++G  D G+LG G   TT         I
Sbjct: 3469 PRKVAALQGKKIISIATGSLHCVACSDQGEVYTWGDNDEGQLGDG---TTNA-------I 3518

Query: 337  PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
              PR      D++     VACG  HT+A   W T +
Sbjct: 3519 QRPRIVTALQDKKITN--VACGSAHTVA---WSTSK 3549



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 184/395 (46%), Gaps = 51/395 (12%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            T +  WG  +  QLG     + +   + + L   KV     GS++   +  +GK      
Sbjct: 2206 TKVFVWGLNDKDQLGGPRGSKIKTPVLNEFLSSLKVVCCAGGSKSLFVVTAEGKVYACGE 2265

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      ++  +IP QVN LS   + + A+  GG H +A+   G+ ++WG  + G+ 
Sbjct: 2266 GTNGRLGLGSSQNVDIPKQVNGLSQYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKL 2325

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G       +  R+L  + +  +R      +R +A G +HS  +T  G ++TWG       
Sbjct: 2326 GHLSRMNCEKPRLL--EALKTKR------IRDIACGSSHSAAVTSSGELYTWGLGEYGRL 2377

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
              GD      P  V+ L   ++I V         L L ++G +++WG+ ++G+LG G ++
Sbjct: 2378 GHGDSTTQLRPKLVKALVGKRVIQVACGSRDAQTLTLTDEGMVYSWGDGDFGKLGRGGSE 2437

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
              S P  V+ L+G  ++ I  G   S ALT  G+V+ WG+G++ RLG G +    K  PQ
Sbjct: 2438 GCSVPHNVERLNGQGVIQIECGAQFSLALTKAGQVWTWGKGDYFRLGHGTDSHVRK--PQ 2495

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
                L G+ I+ V+ G  H +A+T  G +F++G  DHG+ G G      +P  V      
Sbjct: 2496 VAEGLKGKKIIHVAVGALHCLAVTDTGQVFAWGDNDHGQQGDGSTTVNKKPALV------ 2549

Query: 339  PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                  G++   I + VACG  H+ A   W T ++
Sbjct: 2550 -----QGLEGVRITR-VACGSSHSTA---WATTDT 2575



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 48/252 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S+  +  WG GE G+LG G++  +    +VKAL   +V  V  GSR++          
Sbjct: 2360 VTSSGELYTWGLGEYGRLGHGDSTTQLRPKLVKALVGKRVIQVACGSRDA---------- 2409

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                      L + D+G  Y+WG  ++G+ G    R    G  +
Sbjct: 2410 ------------------------QTLTLTDEGMVYSWGDGDFGKLG----RGGSEGCSV 2441

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
              ++   +R   + ++ Q+  G   S+ LT+ G VWTWG+        G    +  P   
Sbjct: 2442 PHNV---ERLNGQGVI-QIECGAQFSLALTKAGQVWTWGKGDYFRLGHGTDSHVRKPQVA 2497

Query: 177  QGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +GL+  K+I  AVGA H LA+ + G ++AWG+N++GQ G G T    +P  VQGL G+ +
Sbjct: 2498 EGLKGKKIIHVAVGALHCLAVTDTGQVFAWGDNDHGQQGDGSTTVNKKPALVQGLEGVRI 2557

Query: 235  VDIAAGGWHSTA 246
              +A G  HSTA
Sbjct: 2558 TRVACGSSHSTA 2569



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            G ++ WG+N  GQLG  +      P  ++ L+ L  + I  G     A+T DG++Y  G 
Sbjct: 3181 GTIYGWGHNHRGQLGGIEGAKVKVPTAIESLTSLRPIQIVGGEQTLFAVTADGKLYATGY 3240

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S   P  +  +    I  V V+ GG H++AL+ +G ++S+G G+ G
Sbjct: 3241 GASGRLGIGGTDSVS--TPTLLESIQHVHIKKVAVNSGGKHALALSVEGEVYSWGEGEDG 3298

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +LG+G +    +P      +       + +D       +ACGG H+  + 
Sbjct: 3299 KLGHGNRTQCDRP-----RVIESLRGKEVID-------IACGGAHSACVT 3336



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 115/301 (38%), Gaps = 86/301 (28%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC--DD-- 56
            + S+  +  WG G  G+LG G++E++    +  AL+ Y+V  V  GS +S  +C  DD  
Sbjct: 3335 VTSSGELYTWGKGRYGRLGHGDSEDQLRPKMADALKGYRVIDVACGSGDSQTLCISDDDN 3394

Query: 57   --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G +    +P +V+ALS+  + +   G    +A+   G  Y WG  +
Sbjct: 3395 VWSWGDGDYGKLGRGGSDGCKVPQKVDALSSIGVCKVECGSQFSIALTKSGCVYTWGKGD 3454

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G      DD  R  R+   +  +   K+I   +A G  H V  + +G V+TWG   
Sbjct: 3455 YHRLGHG---SDDHVRRPRKVAALQGK---KII--SIATGSLHCVACSDQGEVYTWG--- 3503

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                       +N+ GQLG G T    +
Sbjct: 3504 -------------------------------------------DNDEGQLGDGTTNAIQR 3520

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            P  V  L    + ++A G  H+ A +    ++       GRL         + VP + NL
Sbjct: 3521 PRIVTALQDKKITNVACGSAHTVAWSTSKPLHA------GRL--------PQTVPMEYNL 3566

Query: 283  L 283
            L
Sbjct: 3567 L 3567



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 223 PIPVQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           P  V GL     V IA G     + A+TD G ++ +G G++G+LG G +D     +P+ V
Sbjct: 8   PKLVSGLKEQKFVHIALGSNDGQTLAVTDTGLLFSFGNGDYGKLGRGGSDGCK--LPKLV 65

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           + L G+  V   CG   SV LT+ G +++
Sbjct: 66  DKLQGQHAVIACCGNQFSVILTKTGTVYT 94



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 172 VPVRVQGLEQVKLIAVGAFHN----LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            P  V GL++ K + +    N    LA+ + G L+++GN +YG+LG G +     P  V 
Sbjct: 7   TPKLVSGLKEQKFVHIALGSNDGQTLAVTDTGLLFSFGNGDYGKLGRGGSDGCKLPKLVD 66

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVY-----GWGRGEHGRLGF 266
            L G   V    G   S  LT  G VY      W    H  +G 
Sbjct: 67  KLQGQHAVIACCGNQFSVILTKTGTVYTCLTFAWTSSAHWSVGL 110


>gi|114595107|ref|XP_001160807.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
           [Pan troglodytes]
          Length = 984

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 144/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  TVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNRSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 139/325 (42%), Gaps = 62/325 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+        
Sbjct: 44  VLSCGDNSRGQLGRRGAQRGELPEPIQALETLTVDLVSCGKEHSLAVCHKGRVFAWGAGS 103

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +    P ++  L+  KI+Q + G +H LA+    + ++WG N +GQ G  
Sbjct: 104 EGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLG 163

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            E               P + +P+ +       + QVAAGG HS  L+  G  + WG   
Sbjct: 164 KE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSN- 208

Query: 163 PPGDIK--------QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
             G +         Q + P+ V  L+   V  I+ G  H   L +DG ++ +G+N  GQL
Sbjct: 209 SSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQL 268

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRGEHGRLGFGDNDK 271
           G   T  +  P  V+ + GL +  I  G +H+ A     G+V  +G G        D  K
Sbjct: 269 GYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLAYVHTTGQVVSFGHGP------SDTSK 321

Query: 272 --SSKMVPQKVN---LLAGEDIVQV 291
              S+ + +  +   L++ ED+V V
Sbjct: 322 PTHSEALTENFDISCLISAEDLVDV 346



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 66/191 (34%)

Query: 228 GLSGLTLVDIAAGGWHSTALTDD------------------------------------- 250
           G  G  L+  A+G  HS  L  +                                     
Sbjct: 19  GSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLTVD 78

Query: 251 ---------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                          G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG 
Sbjct: 79  LVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGH 137

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            HS+AL++D  +FS+G+  HG+LG G++  +   P  V         + +G+    +A+ 
Sbjct: 138 YHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRV--------RSLEGIP---LAQ- 185

Query: 355 VACGGRHTLAI 365
           VA GG H+ A+
Sbjct: 186 VAAGGAHSFAL 196



 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 46/186 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  -------------KTENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           N+P Q N      AL N  +V  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSSGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTREGH 154
           N  GQ G  P                P++  P+L+      V Q+  G  H++      +
Sbjct: 263 NRSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGSYHTL-----AY 302

Query: 155 VWTWGQ 160
           V T GQ
Sbjct: 303 VHTTGQ 308


>gi|296486675|tpg|DAA28788.1| TPA: hect domain and RLD 6-like isoform 1 [Bos taurus]
          Length = 980

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 153/318 (48%), Gaps = 49/318 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDDTGRI 119
           QV A  NT ++QAA G  H L +   G   + G N  GQ G       E+PER       
Sbjct: 17  QVCAGGNT-LLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPER------- 68

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS-VPV 174
                 IP      L V  V+ G  HS+ +  +G V+ WG         G+ K+ + +P 
Sbjct: 69  ------IP--ALETLNVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPK 120

Query: 175 RVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSG 231
           +++ L  +K+I  A G +H++AL EDG +++WG N +GQLG G   P ++ P  V+ L G
Sbjct: 121 KIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKEFPSQASPQRVRSLEG 180

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQ 290
           + L  +AAGG HS AL+  G  +GWG    G+L   G+N    +  P  +  L    +V 
Sbjct: 181 IPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVS 240

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           +SCG  H+  LT+DG +F+FG   +G+LG+                P     G  +  R 
Sbjct: 241 ISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD---------------PTAEKRGPQLVERI 285

Query: 351 --IAKLVACGGRHTLAIV 366
             +   + CG  HTLA +
Sbjct: 286 EGLVSQIDCGSDHTLAYI 303



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 27/259 (10%)

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWPPGDIKQIS 171
           RR +   Q CA    + Q A+G  HS++L  +G V + G         +  P G+     
Sbjct: 10  RRPLRERQVCAGGNTLLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGE----- 64

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQG 228
            P R+  LE   V L++ G  H+LA+   G ++AWG    GQLG G+ +  +  P  ++ 
Sbjct: 65  QPERIPALETLNVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPKKIKT 124

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+G+ ++ +A G +HS AL++DG+V+ WG   HG+LG G  +  S+  PQ+V  L G  +
Sbjct: 125 LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLG-KEFPSQASPQRVRSLEGIPL 183

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            QV+ GG HS AL+  G  F +G    G+L         Q  + P++I A +  G     
Sbjct: 184 AQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGNNAPVQRYK-PVSIGALKTLG----- 237

Query: 349 RWIAKLVACGGRHTLAIVE 367
                 ++CG +HT  + +
Sbjct: 238 ---VVSISCGYKHTAVLTQ 253



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 131/294 (44%), Gaps = 51/294 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ + G    GQLG       E    + ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLNVALVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +T  IP ++  L+  KI+Q A G +H +A+ + G+ ++WG N +
Sbjct: 98  AWGAASEGQLGIGEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSF 203

Query: 157 TWGQPWPPGDIK--------QISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
            WG     G +         Q   PV +  L+ + ++++  G  H   L +DG ++ +G+
Sbjct: 204 GWGSN-SAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGD 262

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           N YGQLG   T  +  P  V+ + GL +  I  G  H+ A +   G+V  +GRG
Sbjct: 263 NSYGQLGHDPTAEKRGPQLVERIEGL-VSQIDCGSDHTLAYIYTTGQVVSFGRG 315


>gi|301618542|ref|XP_002938670.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Xenopus
           (Silurana) tropicalis]
          Length = 1029

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 144/298 (48%), Gaps = 33/298 (11%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           + + G  H L + + G   + G N YGQ G    RK +   I +   +  Q       + 
Sbjct: 38  KVSCGEKHTLYLLEDGTLLSCGQNPYGQLG----RKSNNSSIEQISSLEAQT------IV 87

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV--GAF 190
            ++ G  HSV ++ EG +++WG         G++   +  P ++ GL   K+I +  G F
Sbjct: 88  DISCGTNHSVAVSDEGSIYSWGDGSEGQLGTGNLSSRNFTPKKITGLFNTKIIQISCGNF 147

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALT 248
           H+LAL EDG +++WG N+ GQLG G +Q  +Q  P  V+ L G+ LV + AGG  S AL+
Sbjct: 148 HSLALSEDGRVFSWGQNKCGQLGLG-SQIINQATPQLVKSLKGIPLVQVTAGGSQSFALS 206

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
             G V+ WG+   G+LGF  +       P  VN L    +  +SCG  H+  L++DG ++
Sbjct: 207 MSGTVFAWGKNNAGQLGFKSDPMKGTFKPHAVNSLRNLGVAYISCGEEHTAVLSKDGSVY 266

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +FG   HG+LG      T  P ++              D       VACG  HTL  V
Sbjct: 267 TFGDDTHGQLGQNSGNQTSVPQKIE-------------DYAGQVSQVACGRYHTLLYV 311



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            Q  E V+ ++ G  H L L EDG L + G N YGQLG        + I    L   T+V
Sbjct: 30  FQSQECVQKVSCGEKHTLYLLEDGTLLSCGQNPYGQLGRKSNNSSIEQI--SSLEAQTIV 87

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           DI+ G  HS A++D+G +Y WG G  G+LG G N  S    P+K+  L    I+Q+SCG 
Sbjct: 88  DISCGTNHSVAVSDEGSIYSWGDGSEGQLGTG-NLSSRNFTPKKITGLFNTKIIQISCGN 146

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            HS+AL+ DG +FS+G+   G+LG G ++
Sbjct: 147 FHSLALSEDGRVFSWGQNKCGQLGLGSQI 175



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 130/282 (46%), Gaps = 40/282 (14%)

Query: 6   SIIAWGSGEDGQLG-IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK---- 60
           ++++ G    GQLG   NN   E +    +LE   +  +  G+ +S+A+ D+G       
Sbjct: 54  TLLSCGQNPYGQLGRKSNNSSIEQI---SSLEAQTIVDISCGTNHSVAVSDEGSIYSWGD 110

Query: 61  -------TENI------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                  T N+      P ++  L NTKI+Q + G +H LA+ + GR ++WG N+ GQ G
Sbjct: 111 GSEGQLGTGNLSSRNFTPKKITGLFNTKIIQISCGNFHSLALSEDGRVFSWGQNKCGQLG 170

Query: 108 EEPERKDD-TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----- 161
              +  +  T ++++    IP        + QV AGG+ S  L+  G V+ WG+      
Sbjct: 171 LGSQIINQATPQLVKSLKGIP--------LVQVTAGGSQSFALSMSGTVFAWGKNNAGQL 222

Query: 162 -WPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
            +    +K    P  V  L    V  I+ G  H   L +DG+++ +G++ +GQLG     
Sbjct: 223 GFKSDPMKGTFKPHAVNSLRNLGVAYISCGEEHTAVLSKDGSVYTFGDDTHGQLGQNSGN 282

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
             S P  ++  +G  +  +A G +H+         +  +G+G
Sbjct: 283 QTSVPQKIEDYAG-QVSQVACGRYHTLLYVFSCNRIVSFGKG 323



 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG    G+L     +K      +     + E + +VSCG  H++ L  DG + S G+
Sbjct: 1   MYCWGDNCFGQLALLQGEKEVVHFKENDYFQSQECVQKVSCGEKHTLYLLEDGTLLSCGQ 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             +G+L  GRK       ++     +   A   VD       ++CG  H++A+
Sbjct: 61  NPYGQL--GRKSNNSSIEQI-----SSLEAQTIVD-------ISCGTNHSVAV 99


>gi|296486676|tpg|DAA28789.1| TPA: hect domain and RLD 6-like isoform 2 [Bos taurus]
          Length = 1016

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 153/318 (48%), Gaps = 49/318 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDDTGRI 119
           QV A  NT ++QAA G  H L +   G   + G N  GQ G       E+PER       
Sbjct: 17  QVCAGGNT-LLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPER------- 68

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS-VPV 174
                 IP      L V  V+ G  HS+ +  +G V+ WG         G+ K+ + +P 
Sbjct: 69  ------IP--ALETLNVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPK 120

Query: 175 RVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSG 231
           +++ L  +K+I  A G +H++AL EDG +++WG N +GQLG G   P ++ P  V+ L G
Sbjct: 121 KIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKEFPSQASPQRVRSLEG 180

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQ 290
           + L  +AAGG HS AL+  G  +GWG    G+L   G+N    +  P  +  L    +V 
Sbjct: 181 IPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVS 240

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           +SCG  H+  LT+DG +F+FG   +G+LG+                P     G  +  R 
Sbjct: 241 ISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD---------------PTAEKRGPQLVERI 285

Query: 351 --IAKLVACGGRHTLAIV 366
             +   + CG  HTLA +
Sbjct: 286 EGLVSQIDCGSDHTLAYI 303



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 27/259 (10%)

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWPPGDIKQIS 171
           RR +   Q CA    + Q A+G  HS++L  +G V + G         +  P G+     
Sbjct: 10  RRPLRERQVCAGGNTLLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGE----- 64

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQG 228
            P R+  LE   V L++ G  H+LA+   G ++AWG    GQLG G+ +  +  P  ++ 
Sbjct: 65  QPERIPALETLNVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPKKIKT 124

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+G+ ++ +A G +HS AL++DG+V+ WG   HG+LG G  +  S+  PQ+V  L G  +
Sbjct: 125 LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLG-KEFPSQASPQRVRSLEGIPL 183

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            QV+ GG HS AL+  G  F +G    G+L         Q  + P++I A +  G     
Sbjct: 184 AQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGNNAPVQRYK-PVSIGALKTLG----- 237

Query: 349 RWIAKLVACGGRHTLAIVE 367
                 ++CG +HT  + +
Sbjct: 238 ---VVSISCGYKHTAVLTQ 253



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 131/294 (44%), Gaps = 51/294 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ + G    GQLG       E    + ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLNVALVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +T  IP ++  L+  KI+Q A G +H +A+ + G+ ++WG N +
Sbjct: 98  AWGAASEGQLGIGEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSF 203

Query: 157 TWGQPWPPGDIK--------QISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
            WG     G +         Q   PV +  L+ + ++++  G  H   L +DG ++ +G+
Sbjct: 204 GWGSN-SAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGD 262

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           N YGQLG   T  +  P  V+ + GL +  I  G  H+ A +   G+V  +GRG
Sbjct: 263 NSYGQLGHDPTAEKRGPQLVERIEGL-VSQIDCGSDHTLAYIYTTGQVVSFGRG 315


>gi|300798276|ref|NP_001179573.1| probable E3 ubiquitin-protein ligase HERC6 [Bos taurus]
          Length = 1016

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 153/318 (48%), Gaps = 49/318 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDDTGRI 119
           QV A  NT ++QAA G  H L +   G   + G N  GQ G       E+PER       
Sbjct: 17  QVCAGGNT-LLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPER------- 68

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS-VPV 174
                 IP      L V  V+ G  HS+ +  +G V+ WG         G+ K+ + +P 
Sbjct: 69  ------IP--ALETLNVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPK 120

Query: 175 RVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSG 231
           +++ L  +K+I  A G +H++AL EDG +++WG N +GQLG G   P ++ P  V+ L G
Sbjct: 121 KIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKEFPSQASPQRVRSLEG 180

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQ 290
           + L  +AAGG HS AL+  G  +GWG    G+L   G+N    +  P  +  L    +V 
Sbjct: 181 IPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGNNAPVQRYKPVSIGALKTLGVVS 240

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           +SCG  H+  LT+DG +F+FG   +G+LG+                P     G  +  R 
Sbjct: 241 ISCGYKHTAVLTQDGKVFTFGDNSYGQLGHD---------------PTAEKRGPQLVERI 285

Query: 351 --IAKLVACGGRHTLAIV 366
             +   + CG  HTLA +
Sbjct: 286 EGLVSQIDCGSDHTLAYI 303



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 27/259 (10%)

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWPPGDIKQIS 171
           RR +   Q CA    + Q A+G  HS++L  +G V + G         +  P G+     
Sbjct: 10  RRPLRERQVCAGGNTLLQAASGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGE----- 64

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQG 228
            P R+  LE   V L++ G  H+LA+   G ++AWG    GQLG G+ +  +  P  ++ 
Sbjct: 65  QPERIPALETLNVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGEFKETTFIPKKIKT 124

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+G+ ++ +A G +HS AL++DG+V+ WG   HG+LG G  +  S+  PQ+V  L G  +
Sbjct: 125 LAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLG-KEFPSQASPQRVRSLEGIPL 183

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            QV+ GG HS AL+  G  F +G    G+L         Q  + P++I A +  G     
Sbjct: 184 AQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGNNAPVQRYK-PVSIGALKTLG----- 237

Query: 349 RWIAKLVACGGRHTLAIVE 367
                 ++CG +HT  + +
Sbjct: 238 ---VVSISCGYKHTAVLTQ 253



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 131/294 (44%), Gaps = 51/294 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ + G    GQLG       E    + ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLNVALVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +T  IP ++  L+  KI+Q A G +H +A+ + G+ ++WG N +
Sbjct: 98  AWGAASEGQLGIGEFKETTFIPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGHHSFALSLSGTSF 203

Query: 157 TWGQPWPPGDIK--------QISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
            WG     G +         Q   PV +  L+ + ++++  G  H   L +DG ++ +G+
Sbjct: 204 GWGSN-SAGQLALSGNNAPVQRYKPVSIGALKTLGVVSISCGYKHTAVLTQDGKVFTFGD 262

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           N YGQLG   T  +  P  V+ + GL +  I  G  H+ A +   G+V  +GRG
Sbjct: 263 NSYGQLGHDPTAEKRGPQLVERIEGL-VSQIDCGSDHTLAYIYTTGQVVSFGRG 315


>gi|198421655|ref|XP_002121487.1| PREDICTED: similar to hect domain and RLD 4 [Ciona intestinalis]
          Length = 1029

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 167/340 (49%), Gaps = 44/340 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + AWG    G+   GN    +    +       ++SV      ++ + +DG   T     
Sbjct: 1   MYAWGKSIIGK-SFGNGANLQVPTEINCFGKTIIKSVRVSRTIAVFLLEDGTVHTFGAEN 59

Query: 62  ENI-----PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY-------GQCGEE 109
           +NI      ++V+AL    IV  A+G  H LA+DD+G+ Y WGGN+        G C   
Sbjct: 60  DNIGHSAGSTKVSALETVHIVDIALGDSHILAIDDKGKVYGWGGNDKDQLGWTDGNCYPS 119

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQP-WP 163
           P++     + L   IV            QVA G +HS+ L   G +W+     +GQ  + 
Sbjct: 120 PKKI----KSLSNKIV------------QVACGHSHSLFLGSNGALWSAGSNNYGQLGFG 163

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                ++   + ++G+   + I+ G +H+  +   GA++ WG N+ GQLG GD   R+ P
Sbjct: 164 DKSSTELRPLISLKGIPFSQ-ISAGFWHSFCVTHSGAVFCWGRNDNGQLGLGDCVDRNVP 222

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--PQKVN 281
           + ++ L  L++  I AG  H+ ALT DG V+ +G  + G+LG G +      V  P+K+ 
Sbjct: 223 VLLKALRSLSVKYICAGELHTAALTLDGGVFTFGSNQFGQLGHGSSGPEPLPVSTPRKIF 282

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGY 320
            L G ++ Q++CG  H+V    + G++++FG  +H +LGY
Sbjct: 283 ELMGNEVTQIACGAQHTVCYVGKTGNVYTFGNNNHSQLGY 322



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 122/279 (43%), Gaps = 41/279 (14%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT----------------KTENIPSQVNALSNTK 75
           V ALE   +  +  G  + LAI D GK                      P ++ +LSN K
Sbjct: 71  VSALETVHIVDIALGDSHILAIDDKGKVYGWGGNDKDQLGWTDGNCYPSPKKIKSLSN-K 129

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           IVQ A G  H L +   G  ++ G N YGQ G      D +   LR     P      + 
Sbjct: 130 IVQVACGHSHSLFLGSNGALWSAGSNNYGQLG----FGDKSSTELR-----PLISLKGIP 180

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAVGA 189
             Q++AG  HS  +T  G V+ WG+        GD    +VPV ++ L    VK I  G 
Sbjct: 181 FSQISAGFWHSFCVTHSGAVFCWGRNDNGQLGLGDCVDRNVPVLLKALRSLSVKYICAGE 240

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG------LSGLTLVDIAAGGWH 243
            H  AL  DG ++ +G+N++GQLG G + P  +P+PV        L G  +  IA G  H
Sbjct: 241 LHTAALTLDGGVFTFGSNQFGQLGHGSSGP--EPLPVSTPRKIFELMGNEVTQIACGAQH 298

Query: 244 STALT-DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +       G VY +G   H +LG+      S+ VP  ++
Sbjct: 299 TVCYVGKTGNVYTFGNNNHSQLGYIPKHPRSEFVPHPLS 337



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 29/172 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE--- 62
           ++  WG  ++GQLG+G+  +R    ++KAL    V+ + AG  ++ A+  DG   T    
Sbjct: 199 AVFCWGRNDNGQLGLGDCVDRNVPVLLKALRSLSVKYICAGELHTAALTLDGGVFTFGSN 258

Query: 63  -----------------NIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYG 104
                            + P ++  L   ++ Q A G  H +  V   G  Y +G N + 
Sbjct: 259 QFGQLGHGSSGPEPLPVSTPRKIFELMGNEVTQIACGAQHTVCYVGKTGNVYTFGNNNHS 318

Query: 105 QCGEEPE--RKDDTGRILRRDI---VIPQRCAPKL---IVRQVAAGGTHSVV 148
           Q G  P+  R +     L  D+          PKL    V+++ AG T S +
Sbjct: 319 QLGYIPKHPRSEFVPHPLSSDMWTSSASTSSYPKLNSVFVKEIGAGKTESFI 370


>gi|50543738|ref|XP_500035.1| YALI0A13299p [Yarrowia lipolytica]
 gi|49645900|emb|CAG83964.1| YALI0A13299p [Yarrowia lipolytica CLIB122]
          Length = 498

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 161/326 (49%), Gaps = 41/326 (12%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI-------- 124
           + +IV  A+GG H L +D QGR ++WGGN+ G  G     +D +G  + +D+        
Sbjct: 121 SKEIVDIAVGGQHGLVLDSQGRVWSWGGNDLGALG-----RDTSGHEVLKDMDADESDDE 175

Query: 125 ----VIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWPP-------GDIK 168
               + P    P L+       ++ A  + S+ LT EG VW WG              +K
Sbjct: 176 DDPKLNPAESIPALVDTDQRFVKIEASDSLSLALTAEGDVWAWGSFRNSQGTMGFSDKVK 235

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             + PV+++ L  +  IA G  H LAL + G +  WG++E  +LG    +    P   + 
Sbjct: 236 VQNRPVKIEELSNIAAIAAGRDHVLALTQWGTVHTWGDSENFRLGWKSNRSTLSP---RE 292

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGED 287
           L    +V + AG +HS A+  DG+V  WG  ++G+ G  G +D ++   P  V+ L G+D
Sbjct: 293 LGLKNIVYVGAGEFHSFAIDTDGKVLAWGLNQYGQCGILGQSDNAAVDGPTYVDALDGKD 352

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT--------TGQPMEVPINIPAP 339
           IV V+ G  HS+AL++DG ++SFGR D+ ++G+  K           G P  +P+  P  
Sbjct: 353 IVAVTGGEHHSLALSKDGTVYSFGRYDYHQIGFTTKDLPEGTVRDDKGNPRFLPVPSPLS 412

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
               D  ++    + +ACG  H+L I
Sbjct: 413 LGGEDDDEKLPKMRFIACGAHHSLII 438



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 43/300 (14%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQCGEEPERKDDTGRI 119
           E+IP+ V+  ++ + V+        LA+  +G  +AWG   N  G  G       D  ++
Sbjct: 184 ESIPALVD--TDQRFVKIEASDSLSLALTAEGDVWAWGSFRNSQGTMGFS-----DKVKV 236

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVP 173
             R + I +       +  +AAG  H + LT+ G V TWG        W      + ++ 
Sbjct: 237 QNRPVKIEELSN----IAAIAAGRDHVLALTQWGTVHTWGDSENFRLGWKSN---RSTLS 289

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ---LGTGDTQPRSQPIPVQGLS 230
            R  GL+ +  +  G FH+ A+  DG + AWG N+YGQ   LG  D      P  V  L 
Sbjct: 290 PRELGLKNIVYVGAGEFHSFAIDTDGKVLAWGLNQYGQCGILGQSDNAAVDGPTYVDALD 349

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG----------DNDKSSKMVPQKV 280
           G  +V +  G  HS AL+ DG VY +GR ++ ++GF           D+  + + +P   
Sbjct: 350 GKDIVAVTGGEHHSLALSKDGTVYSFGRYDYHQIGFTTKDLPEGTVRDDKGNPRFLPVPS 409

Query: 281 NL-LAGED-------IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            L L GED       +  ++CG  HS+ +  DG ++++G     + G+  +     P ++
Sbjct: 410 PLSLGGEDDDEKLPKMRFIACGAHHSLIIDVDGRVWTWGFSSSFQTGHAEEDDVETPRKI 469



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 116/286 (40%), Gaps = 52/286 (18%)

Query: 47  SRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
           S+ ++   D  K K +N P ++  LSN  I   A G  H LA+   G  + WG +E  + 
Sbjct: 224 SQGTMGFSD--KVKVQNRPVKIEELSN--IAAIAAGRDHVLALTQWGTVHTWGDSENFRL 279

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----- 161
           G +  R            + P+    K IV  V AG  HS  +  +G V  WG       
Sbjct: 280 GWKSNRS----------TLSPRELGLKNIV-YVGAGEFHSFAIDTDGKVLAWGLNQYGQC 328

Query: 162 --WPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLG--TG 215
                 D   +  P  V  L+   ++AV  G  H+LAL +DG ++++G  +Y Q+G  T 
Sbjct: 329 GILGQSDNAAVDGPTYVDALDGKDIVAVTGGEHHSLALSKDGTVYSFGRYDYHQIGFTTK 388

Query: 216 DT----------QPRSQPIPV----------QGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           D            PR  P+P           + L  +    IA G  HS  +  DG V+ 
Sbjct: 389 DLPEGTVRDDKGNPRFLPVPSPLSLGGEDDDEKLPKMRF--IACGAHHSLIIDVDGRVWT 446

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE--DIVQVSCGGTHSV 299
           WG     + G  + D      P+K+   A +  D+     GG  SV
Sbjct: 447 WGFSSSFQTGHAEEDDVE--TPRKIMNTAIKPIDVKMAGGGGQFSV 490



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 66/283 (23%)

Query: 9   AWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----EN 63
           AWGS  + Q  +G +++ +     VK  E   + ++ AG  + LA+   G   T    EN
Sbjct: 217 AWGSFRNSQGTMGFSDKVKVQNRPVKIEELSNIAAIAAGRDHVLALTQWGTVHTWGDSEN 276

Query: 64  I----PSQVNALSNTK-----IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG------- 107
                 S  + LS  +     IV    G +H  A+D  G+  AWG N+YGQCG       
Sbjct: 277 FRLGWKSNRSTLSPRELGLKNIVYVGAGEFHSFAIDTDGKVLAWGLNQYGQCGILGQSDN 336

Query: 108 ---EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----- 159
              + P   D    +  +DIV             V  G  HS+ L+++G V+++G     
Sbjct: 337 AAVDGPTYVD---ALDGKDIV------------AVTGGEHHSLALSKDGTVYSFGRYDYH 381

Query: 160 ------QPWPPGDIKQ---------ISVPVRVQG------LEQVKLIAVGAFHNLALQED 198
                 +  P G ++          +  P+ + G      L +++ IA GA H+L +  D
Sbjct: 382 QIGFTTKDLPEGTVRDDKGNPRFLPVPSPLSLGGEDDDEKLPKMRFIACGAHHSLIIDVD 441

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           G +W WG +   Q G  +      P  +   + +  +D+   G
Sbjct: 442 GRVWTWGFSSSFQTGHAEEDDVETPRKIMN-TAIKPIDVKMAG 483



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 34/194 (17%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIP-VQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           D  ++A+G  +  +LG G  +  +   P +       +VDIA GG H   L   G V+ W
Sbjct: 87  DCEVFAFGTGDMCELGLGPEKASTVKRPRLSPYLSKEIVDIAVGGQHGLVLDSQGRVWSW 146

Query: 257 GRGEHGRLGFGDN---------------DKSSKMVP-QKVNLLAGED--IVQVSCGGTHS 298
           G  + G LG   +               +   K+ P + +  L   D   V++    + S
Sbjct: 147 GGNDLGALGRDTSGHEVLKDMDADESDDEDDPKLNPAESIPALVDTDQRFVKIEASDSLS 206

Query: 299 VALTRDGHIFSFG--RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           +ALT +G ++++G  R   G +G+  KV        P+ I    N             +A
Sbjct: 207 LALTAEGDVWAWGSFRNSQGTMGFSDKVKV---QNRPVKIEELSNIA----------AIA 253

Query: 357 CGGRHTLAIVEWQT 370
            G  H LA+ +W T
Sbjct: 254 AGRDHVLALTQWGT 267



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 217 TQPRSQPIPV-QGLSGLTLVDIAAGGWHSTALTD-------DGEVYGWGRGEHGRLGFGD 268
           T    +PIP  +  S L L  I     HS  L         D EV+ +G G+   LG G 
Sbjct: 46  TVKEEKPIPAAKAPSRLRLSAIQRKHKHSPTLLPLPSINKVDCEVFAFGTGDMCELGLGP 105

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
              S+   P+    L+ E IV ++ GG H + L   G ++S+G  D G LG
Sbjct: 106 EKASTVKRPRLSPYLSKE-IVDIAVGGQHGLVLDSQGRVWSWGGNDLGALG 155


>gi|383319169|ref|YP_005380010.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320539|gb|AFC99491.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 438

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 145/283 (51%), Gaps = 23/283 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T   N P  V  L N + V  A+G  H LA+ + G  +AWG N  GQ G+       
Sbjct: 124 DGTTMDHNTPGMVGGLGNVRAV--AVGISHMLALGNDGTVWAWGKNNCGQLGDGTNV--- 178

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVP 173
                  D + P R +    +  ++AG  H++ +   G+VWTWG       GD   IS P
Sbjct: 179 -------DSMTPVRVSGLPRIVAISAGYNHNLAIDDAGNVWTWGLNDCGQLGDGTNISSP 231

Query: 174 --VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
              +V+GL  V  +A G+  +LAL++DG +WAWG+N  G+LG G T+    P+ VQGL+ 
Sbjct: 232 NPKKVKGLANVTAVAGGSSFSLALKDDGTIWAWGSNVQGELGVGTTKDCPLPVKVQGLT- 290

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             ++ IAAGG  S A+T+DG ++ WG  E G+   G  D SS   P++ + L+   +V +
Sbjct: 291 -NVIRIAAGGETSAAITNDGSLWVWGHNEQGKYISGGEDASS---PRRASGLSNVKLVDI 346

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             G  + +AL  DG ++  G    G+LG G       P  V I
Sbjct: 347 --GTINIIALENDGSLWVVGDNQFGQLGTGNTYDRNMPARVAI 387



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 127/269 (47%), Gaps = 25/269 (9%)

Query: 70  ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
           A S   +V  A G    +A+ D G  + WG + +G  G E            +D  +P+R
Sbjct: 37  AASQPSVVDVAEGHGLSVALLDNGTVWTWGHSWHGGLGYESV----------QDQYVPKR 86

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDIKQISVPVRVQGLEQVK 183
             P   V  V +       L  +G VWTWG  W        G     + P  V GL  V+
Sbjct: 87  -VPIYNVTSVDSCFASVAALKDDGTVWTWG--WNEYGQLGDGTTMDHNTPGMVGGLGNVR 143

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            +AVG  H LAL  DG +WAWG N  GQLG G       P+ V GL    +V I+AG  H
Sbjct: 144 AVAVGISHMLALGNDGTVWAWGKNNCGQLGDGTNVDSMTPVRVSGLP--RIVAISAGYNH 201

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           + A+ D G V+ WG  + G+LG G N  S    P+KV  LA  ++  V+ G + S+AL  
Sbjct: 202 NLAIDDAGNVWTWGLNDCGQLGDGTNISSPN--PKKVKGLA--NVTAVAGGSSFSLALKD 257

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           DG I+++G    G LG G       P++V
Sbjct: 258 DGTIWAWGSNVQGELGVGTTKDCPLPVKV 286



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 109/209 (52%), Gaps = 12/209 (5%)

Query: 129 RCA-PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG----DIKQISVPVRVQGLEQVK 183
           RCA  +  V  VA G   SV L   G VWTWG  W  G     ++   VP RV  +  V 
Sbjct: 35  RCAASQPSVVDVAEGHGLSVALLDNGTVWTWGHSWHGGLGYESVQDQYVPKRVP-IYNVT 93

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            +        AL++DG +W WG NEYGQLG G T   + P  V GL  +  V  A G  H
Sbjct: 94  SVDSCFASVAALKDDGTVWTWGWNEYGQLGDGTTMDHNTPGMVGGLGNVRAV--AVGISH 151

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             AL +DG V+ WG+   G+LG G N  S  M P +V+ L    IV +S G  H++A+  
Sbjct: 152 MLALGNDGTVWAWGKNNCGQLGDGTNVDS--MTPVRVSGL--PRIVAISAGYNHNLAIDD 207

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            G+++++G  D G+LG G  +++  P +V
Sbjct: 208 AGNVWTWGLNDCGQLGDGTNISSPNPKKV 236


>gi|391347040|ref|XP_003747773.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
           [Metaseiulus occidentalis]
          Length = 523

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 168/328 (51%), Gaps = 34/328 (10%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K ++N+P     + N  ++  A G  H + +   GR +++G N+YGQ G   
Sbjct: 20  AVFTFGKSKFSDNLPGTF-WVKNDAVISVACGDQHSVFITASGRTFSFGSNDYGQLGHGH 78

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQ---VAAGGTHSVVLTREGHVWTWG-----QPW 162
            +            ++  RC   L  ++   VA G +H++V T +  V+ +G     Q  
Sbjct: 79  TKA-----------LVNPRCVKALKDKRAILVACGRSHTLVATDDKKVYAFGINSEHQLG 127

Query: 163 PPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                   + P  V  L   QVK +  GA H+LAL   G ++ WG++E+GQLG G  + R
Sbjct: 128 VKSSAAYHADPQLVATLNGVQVKALTAGADHSLALSAKGIVYLWGSSEHGQLGLGRKKQR 187

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
              +PVQ  +    + I+AG +HS  +  DG +Y +G  EHG+LG     K  +  P KV
Sbjct: 188 K--LPVQLKTEGKAIAISAGAYHSAYVNTDGVLYTFGETEHGKLGTNLAPKKCRK-PSKV 244

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT-TGQP--MEVPINIP 337
             + G  +  V+CGG+H+VALT DG  +SFG G  G+LG G++VT  G+P  +++P  + 
Sbjct: 245 PDIQGL-VTSVACGGSHTVALTCDGRAYSFGDGSQGQLGLGQRVTHAGRPHLIQMPTGVK 303

Query: 338 APRNAGDGVDRRWIA---KLVACG-GRH 361
             R +       +++   ++  CG GRH
Sbjct: 304 MARVSAGQSHTAFLSEGRQMYTCGEGRH 331



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 150/321 (46%), Gaps = 39/321 (12%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI--- 64
            ++GS + GQLG G+ +       VKAL+  +   V  G  ++L   DD K     I   
Sbjct: 64  FSFGSNDYGQLGHGHTKALVNPRCVKALKDKRAILVACGRSHTLVATDDKKVYAFGINSE 123

Query: 65  --------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                         P  V  L+  ++     G  H LA+  +G  Y WG +E+GQ G   
Sbjct: 124 HQLGVKSSAAYHADPQLVATLNGVQVKALTAGADHSLALSAKGIVYLWGSSEHGQLG--- 180

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--------W 162
                 GR  +R + +  +   K I   ++AG  HS  +  +G ++T+G+          
Sbjct: 181 -----LGRKKQRKLPVQLKTEGKAIA--ISAGAYHSAYVNTDGVLYTFGETEHGKLGTNL 233

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS- 221
            P   ++ S    +QGL  V  +A G  H +AL  DG  +++G+   GQLG G     + 
Sbjct: 234 APKKCRKPSKVPDIQGL--VTSVACGGSHTVALTCDGRAYSFGDGSQGQLGLGQRVTHAG 291

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK-SSKMVPQKV 280
           +P  +Q  +G+ +  ++AG  H+  L++  ++Y  G G HG+L   D +  S+K  P  V
Sbjct: 292 RPHLIQMPTGVKMARVSAGQSHTAFLSEGRQMYTCGEGRHGKLALEDGEMGSNKFSPMLV 351

Query: 281 NLLAGEDIVQVSCGGTHSVAL 301
           ++L+   + QVSCGG H++ L
Sbjct: 352 DILSLFQVQQVSCGGCHTLVL 372



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 39/323 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G TK    P  V AL + + +  A G  H L   D  + YA+G N   Q G +       
Sbjct: 77  GHTKALVNPRCVKALKDKRAILVACGRSHTLVATDDKKVYAFGINSEHQLGVKSS----- 131

Query: 117 GRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP----WPPG 165
                          P+L+       V+ + AG  HS+ L+ +G V+ WG         G
Sbjct: 132 ---------AAYHADPQLVATLNGVQVKALTAGADHSLALSAKGIVYLWGSSEHGQLGLG 182

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS--QP 223
             KQ  +PV+++   +   I+ GA+H+  +  DG L+ +G  E+G+LGT +  P+   +P
Sbjct: 183 RKKQRKLPVQLKTEGKAIAISAGAYHSAYVNTDGVLYTFGETEHGKLGT-NLAPKKCRKP 241

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V  + GL +  +A GG H+ ALT DG  Y +G G  G+LG G     +   P  + + 
Sbjct: 242 SKVPDIQGL-VTSVACGGSHTVALTCDGRAYSFGDGSQGQLGLGQRVTHAGR-PHLIQMP 299

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            G  + +VS G +H+  L+    +++ G G HG+L         +  E+  N  +P    
Sbjct: 300 TGVKMARVSAGQSHTAFLSEGRQMYTCGEGRHGKLAL-------EDGEMGSNKFSPMLV- 351

Query: 344 DGVDRRWIAKLVACGGRHTLAIV 366
             +   +  + V+CGG HTL +V
Sbjct: 352 -DILSLFQVQQVSCGGCHTLVLV 373



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 70/258 (27%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WGS E GQLG+G  ++R+                                    +P 
Sbjct: 168 VYLWGSSEHGQLGLGRKKQRK------------------------------------LPV 191

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           Q+   +  K +  + G +H   V+  G  Y +G  E+G+ G                 + 
Sbjct: 192 QLK--TEGKAIAISAGAYHSAYVNTDGVLYTFGETEHGKLGTN---------------LA 234

Query: 127 PQRC-----APKL--IVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPV 174
           P++C      P +  +V  VA GG+H+V LT +G  +++     GQ      +     P 
Sbjct: 235 PKKCRKPSKVPDIQGLVTSVACGGSHTVALTCDGRAYSFGDGSQGQLGLGQRVTHAGRPH 294

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ---PRSQPIPVQGL 229
            +Q    VK+  ++ G  H   L E   ++  G   +G+L   D +    +  P+ V  L
Sbjct: 295 LIQMPTGVKMARVSAGQSHTAFLSEGRQMYTCGEGRHGKLALEDGEMGSNKFSPMLVDIL 354

Query: 230 SGLTLVDIAAGGWHSTAL 247
           S   +  ++ GG H+  L
Sbjct: 355 SLFQVQQVSCGGCHTLVL 372



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 12/80 (15%)

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++ V+CG  HSV +T  G  FSFG  D+G+LG+G         +  +N   PR      D
Sbjct: 44  VISVACGDQHSVFITASGRTFSFGSNDYGQLGHGH-------TKALVN---PRCVKALKD 93

Query: 348 RRWIAKLVACGGRHTLAIVE 367
           +R I  LVACG  HTL   +
Sbjct: 94  KRAI--LVACGRSHTLVATD 111


>gi|111220973|ref|YP_711767.1| BNR repeat-containing protein [Frankia alni ACN14a]
 gi|111148505|emb|CAJ60176.1| BNR repeat domain protein (partial) [Frankia alni ACN14a]
          Length = 385

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 158/327 (48%), Gaps = 33/327 (10%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG T T   P QV  L++  + Q A GG+H + +   G  +  G N  G+ G+       
Sbjct: 25  DGSTTTRLTPVQVVGLTD-GVTQVAAGGYHSVVLRSDGTVWTSGLNLNGELGDGTTTDRR 83

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T          P   +    + Q+AA    ++ L  +G VW WG         G  +  +
Sbjct: 84  T----------PGPVSGLTGITQIAANSHFTLALRSDGTVWAWGANSYGQLGDGSTRGRN 133

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+V GL  +  +  GA H LAL+ DG +WAWG+NE+GQ+G G T  RS P  V GL+G
Sbjct: 134 TPVQVSGLAGITQVDAGAAHGLALRNDGTVWAWGDNEFGQVGDGSTTSRSTPTQVSGLTG 193

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +T   IAAGG HS  +  DG V+GWG   +G+LG G    S+  V  +   L G  + ++
Sbjct: 194 VT--QIAAGGGHSLVVRGDGAVWGWGLNRNGQLGDGTTRDSTTAV--RAAGLTG--VARI 247

Query: 292 SCGGTHSVAL-----TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP------INIPAPR 340
           + G THS+AL        G +F++G    G+LG   +     P+ +P          A +
Sbjct: 248 AAGETHSLALLGGAGLSSGQVFAWGDNSSGQLGDRTRTDRVTPVRIPGLPPAGATTSAAQ 307

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +G     R + + +A G  H+LA++ 
Sbjct: 308 GSGAAQGPRSVTQ-IATGNLHSLALLS 333



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 159/366 (43%), Gaps = 62/366 (16%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------------- 53
           AWG   DG LG G+   R     V  L    V  V AG  +S+ +               
Sbjct: 14  AWGFNPDGALGDGSTTTRLTPVQVVGLTD-GVTQVAAGGYHSVVLRSDGTVWTSGLNLNG 72

Query: 54  -CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              DG T     P  V+ L  T I Q A      LA+   G  +AWG N YGQ G+   R
Sbjct: 73  ELGDGTTTDRRTPGPVSGL--TGITQIAANSHFTLALRSDGTVWAWGANSYGQLGDGSTR 130

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
             +T          P + +    + QV AG  H + L  +G VW WG         G   
Sbjct: 131 GRNT----------PVQVSGLAGITQVDAGAAHGLALRNDGTVWAWGDNEFGQVGDGSTT 180

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             S P +V GL  V  IA G  H+L ++ DGA+W WG N  GQLG G T+  +  +   G
Sbjct: 181 SRSTPTQVSGLTGVTQIAAGGGHSLVVRGDGAVWGWGLNRNGQLGDGTTRDSTTAVRAAG 240

Query: 229 LSGLTLVDIAAGGWHSTALT-----DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           L+G+    IAAG  HS AL        G+V+ WG    G+LG  D  ++ ++ P ++  L
Sbjct: 241 LTGV--ARIAAGETHSLALLGGAGLSSGQVFAWGDNSSGQLG--DRTRTDRVTPVRIPGL 296

Query: 284 --AG---------------EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
             AG                 + Q++ G  HS+AL  DG ++++GR     LG G + T 
Sbjct: 297 PPAGATTSAAQGSGAAQGPRSVTQIATGNLHSLALLSDGTVWAWGRYP---LGDGTETTR 353

Query: 327 GQPMEV 332
             P++V
Sbjct: 354 ESPVKV 359



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 129/279 (46%), Gaps = 45/279 (16%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NS     DG T+  N P QV+ L+   I Q   G  H LA+ + G  +AWG NE+GQ G+
Sbjct: 119 NSYGQLGDGSTRGRNTPVQVSGLAG--ITQVDAGAAHGLALRNDGTVWAWGDNEFGQVGD 176

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T          P + +    V Q+AAGG HS+V+  +G VW WG         
Sbjct: 177 GSTTSRST----------PTQVSGLTGVTQIAAGGGHSLVVRGDGAVWGWGLNRNGQLGD 226

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ-----EDGALWAWGNNEYGQLGTGDTQP 219
           G  +  +  VR  GL  V  IA G  H+LAL        G ++AWG+N  GQLG      
Sbjct: 227 GTTRDSTTAVRAAGLTGVARIAAGETHSLALLGGAGLSSGQVFAWGDNSSGQLGDRTRTD 286

Query: 220 RSQPIPVQGL--SGLT---------------LVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           R  P+ + GL  +G T               +  IA G  HS AL  DG V+ W     G
Sbjct: 287 RVTPVRIPGLPPAGATTSAAQGSGAAQGPRSVTQIATGNLHSLALLSDGTVWAW-----G 341

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           R   GD  ++++  P KV  L+G  + QVS GG  S+A+
Sbjct: 342 RYPLGDGTETTRESPVKVLALSG--VRQVSGGGFFSMAV 378



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 118/286 (41%), Gaps = 63/286 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG+   GQLG G+   R     V  L    +  V AG+ + LA+ +DG        
Sbjct: 112 TVWAWGANSYGQLGDGSTRGRNTPVQVSGLA--GITQVDAGAAHGLALRNDGTVWAWGDN 169

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T + + P+QV+ L  T + Q A GG H L V   G  + WG N  GQ G+ 
Sbjct: 170 EFGQVGDGSTTSRSTPTQVSGL--TGVTQIAAGGGHSLVVRGDGAVWGWGLNRNGQLGDG 227

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT-----REGHVWTWG--QPW 162
             R          D     R A    V ++AAG THS+ L        G V+ WG     
Sbjct: 228 TTR----------DSTTAVRAAGLTGVARIAAGETHSLALLGGAGLSSGQVFAWGDNSSG 277

Query: 163 PPGDIKQIS--VPVRVQGL-------------------EQVKLIAVGAFHNLALQEDGAL 201
             GD  +     PVR+ GL                     V  IA G  H+LAL  DG +
Sbjct: 278 QLGDRTRTDRVTPVRIPGLPPAGATTSAAQGSGAAQGPRSVTQIATGNLHSLALLSDGTV 337

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           WAWG      LG G    R  P+ V  LSG+    ++ GG+ S A+
Sbjct: 338 WAWGRYP---LGDGTETTRESPVKVLALSGVR--QVSGGGFFSMAV 378



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 55/232 (23%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG  E GQ+G G+   R     V  L    V  + AG  +SL +  DG        
Sbjct: 162 TVWAWGDNEFGQVGDGSTTSRSTPTQVSGLT--GVTQIAAGGGHSLVVRGDGAVWGWGLN 219

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVD-----DQGRAYAWGGNEYGQC 106
                    T +  + V A   T + + A G  H LA+        G+ +AWG N  GQ 
Sbjct: 220 RNGQLGDGTTRDSTTAVRAAGLTGVARIAAGETHSLALLGGAGLSSGQVFAWGDNSSGQL 279

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKL--------------------IVRQVAAGGTHS 146
           G+            R D V P R  P L                     V Q+A G  HS
Sbjct: 280 GDR----------TRTDRVTPVRI-PGLPPAGATTSAAQGSGAAQGPRSVTQIATGNLHS 328

Query: 147 VVLTREGHVWTWGQPWPPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQ 196
           + L  +G VW WG+ +P GD  + +   PV+V  L  V+ ++ G F ++A++
Sbjct: 329 LALLSDGTVWAWGR-YPLGDGTETTRESPVKVLALSGVRQVSGGGFFSMAVR 379


>gi|383453805|ref|YP_005367794.1| hypothetical protein COCOR_01791, partial [Corallococcus
           coralloides DSM 2259]
 gi|380728287|gb|AFE04289.1| hypothetical protein COCOR_01791 [Corallococcus coralloides DSM
           2259]
          Length = 827

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 169/349 (48%), Gaps = 39/349 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG      LG+G+ E       V+  +   VRS+ AG  +SLA+  +G        
Sbjct: 497 TVWAWGDNSFSALGLGD-EPGASPTPVQVPKLAGVRSLAAGENSSLAVLANGTVMAWGYG 555

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         IP  +  LS   I   A+G W+ LA+ + G  ++WG N  GQ G+ 
Sbjct: 556 LFGQLGSESASIFQIPEPIFGLSG--ITAVAMGHWYSLALREDGTVWSWGYNASGQLGDG 613

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDI 167
               D+  R        P + A    V  +AAG +H++ L  +G VW WG       GD 
Sbjct: 614 --TTDERPR--------PGQVAGLTQVTAIAAGASHALALRADGTVWAWGSNALGTLGDG 663

Query: 168 KQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            Q S   PV+VQGL  V  +A G +H+LAL+EDG +W+WGNN  GQLG      R  P  
Sbjct: 664 TQTSRSTPVQVQGLTGVIAVAAGEYHSLALREDGTVWSWGNNNEGQLGDVTASSRQSPGQ 723

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+G+    IAAG  H+ A  + G +  +G+   G+LG G+  ++      +  + + 
Sbjct: 724 VPGLAGVQ--RIAAGEKHALAAVEGGPLVAFGKNTSGQLGLGERKENQS----RGEIASL 777

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +   ++ G  H++A+  DG ++++G    G+LG G    + QP+ V +
Sbjct: 778 RNPRGIAAGIAHTLAVAADGTVWAWGANATGQLGNGEAANSPQPITVKL 826



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 147/302 (48%), Gaps = 39/302 (12%)

Query: 43  VVAGSRNSLAICDDG-----------------KTKTENIPSQVNALSNTKIVQAAIGGWH 85
           V AG  +SLA+  DG                 +      P QV  L+  + + A  G   
Sbjct: 482 VAAGKTHSLALLADGTVWAWGDNSFSALGLGDEPGASPTPVQVPKLAGVRSLAA--GENS 539

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LAV   G   AWG   +GQ G E      +  I +    IP+       +  VA G  +
Sbjct: 540 SLAVLANGTVMAWGYGLFGQLGSE------SASIFQ----IPEPIFGLSGITAVAMGHWY 589

Query: 146 SVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
           S+ L  +G VW+WG         G   +   P +V GL QV  IA GA H LAL+ DG +
Sbjct: 590 SLALREDGTVWSWGYNASGQLGDGTTDERPRPGQVAGLTQVTAIAAGASHALALRADGTV 649

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           WAWG+N  G LG G    RS P+ VQGL+G  ++ +AAG +HS AL +DG V+ WG    
Sbjct: 650 WAWGSNALGTLGDGTQTSRSTPVQVQGLTG--VIAVAAGEYHSLALREDGTVWSWGNNNE 707

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G+L  GD   SS+  P +V  LAG  + +++ G  H++A    G + +FG+   G+LG G
Sbjct: 708 GQL--GDVTASSRQSPGQVPGLAG--VQRIAAGEKHALAAVEGGPLVAFGKNTSGQLGLG 763

Query: 322 RK 323
            +
Sbjct: 764 ER 765



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 164/348 (47%), Gaps = 41/348 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           ++ +WGS  DG LG+   E+R    V  K      V +V  G   ++A+  DG  ++   
Sbjct: 347 TVSSWGSNVDGALGV---EQRSNSRVPSKVFGLTDVATVSVGGYYAVALMGDGTVRSWGN 403

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                        + P+ V  L+    V A  G  H +AV   G    WG N++ Q G  
Sbjct: 404 NDSGQLGDGTYIRHTPTPVPGLTGVTAVSA--GEDHVVAVLSDGSPRVWGDNQFMQLGRP 461

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPG 165
           PE  +  G      + +P      L    VAAG THS+ L  +G VW WG         G
Sbjct: 462 PESVNRGG-----PVQVPGLTEASL----VAAGKTHSLALLADGTVWAWGDNSFSALGLG 512

Query: 166 DIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           D    S  PV+V  L  V+ +A G   +LA+  +G + AWG   +GQLG+        P 
Sbjct: 513 DEPGASPTPVQVPKLAGVRSLAAGENSSLAVLANGTVMAWGYGLFGQLGSESASIFQIPE 572

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           P+ GLSG+T V  A G W+S AL +DG V+ WG    G+LG G  D+  +  P +V  L 
Sbjct: 573 PIFGLSGITAV--AMGHWYSLALREDGTVWSWGYNASGQLGDGTTDERPR--PGQVAGL- 627

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +  ++ G +H++AL  DG ++++G    G LG G + +   P++V
Sbjct: 628 -TQVTAIAAGASHALALRADGTVWAWGSNALGTLGDGTQTSRSTPVQV 674



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 159/349 (45%), Gaps = 41/349 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ AWG+   GQLG G          V   +   V SV A +  S A+  DG   +    
Sbjct: 295 TVRAWGANIYGQLGDGGFSLEGNPRPVAVSKLTDVVSVAASTSLSFAVHSDGTVSSWGSN 354

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         +PS+V  L  T +   ++GG++ +A+   G   +WG N+ GQ G+ 
Sbjct: 355 VDGALGVEQRSNSRVPSKVFGL--TDVATVSVGGYYAVALMGDGTVRSWGNNDSGQLGD- 411

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------P 163
                  G  +R     P        V  V+AG  H V +  +G    WG         P
Sbjct: 412 -------GTYIRH---TPTPVPGLTGVTAVSAGEDHVVAVLSDGSPRVWGDNQFMQLGRP 461

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           P  + +   PV+V GL +  L+A G  H+LAL  DG +WAWG+N +  LG GD +P + P
Sbjct: 462 PESVNR-GGPVQVPGLTEASLVAAGKTHSLALLADGTVWAWGDNSFSALGLGD-EPGASP 519

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            PVQ      +  +AAG   S A+  +G V  WG G  G+L  G    S   +P+ +  L
Sbjct: 520 TPVQVPKLAGVRSLAAGENSSLAVLANGTVMAWGYGLFGQL--GSESASIFQIPEPIFGL 577

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +G  I  V+ G  +S+AL  DG ++S+G    G+LG G      +P +V
Sbjct: 578 SG--ITAVAMGHWYSLALREDGTVWSWGYNASGQLGDGTTDERPRPGQV 624



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 142/305 (46%), Gaps = 31/305 (10%)

Query: 42  SVVAGSRNSLAICDDGKT--------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
           +V AG  +SL +  DG          + +     V  L++ + V A  G  H LA+   G
Sbjct: 137 AVAAGRYHSLMVRPDGTVLEWGLSYLRFDGGVRPVPGLTDVRAVSA--GNEHALALRTDG 194

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
             +AWG N  GQ G+  +    T          P +      V  V+A G  S+ L ++G
Sbjct: 195 TVWAWGSNFAGQLGDGTKTSRST----------PVQVVGLTEVIAVSAAGYSSLALRKDG 244

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
            VW WG         G ++    PV+V  L +V  +A G  H+LA+  DG + AWG N Y
Sbjct: 245 TVWAWGDNESGQLGDGTMEGRLTPVQVLDLVRVTGLAAGRGHSLAVLADGTVRAWGANIY 304

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           GQLG G       P PV  +S LT +V +AA    S A+  DG V  WG    G LG   
Sbjct: 305 GQLGDGGFSLEGNPRPV-AVSKLTDVVSVAASTSLSFAVHSDGTVSSWGSNVDGALGV-- 361

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
             +S+  VP KV  L   D+  VS GG ++VAL  DG + S+G  D G+LG G  +    
Sbjct: 362 EQRSNSRVPSKVFGL--TDVATVSVGGYYAVALMGDGTVRSWGNNDSGQLGDGTYIRH-T 418

Query: 329 PMEVP 333
           P  VP
Sbjct: 419 PTPVP 423



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 169/379 (44%), Gaps = 47/379 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWGS   GQLG G    R     V  L   +V +V A   +SLA+  DG        
Sbjct: 195 TVWAWGSNFAGQLGDGTKTSRSTPVQVVGLT--EVIAVSAAGYSSLALRKDGTVWAWGDN 252

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                     E   + V  L   ++   A G  H LAV   G   AWG N YGQ G+   
Sbjct: 253 ESGQLGDGTMEGRLTPVQVLDLVRVTGLAAGRGHSLAVLADGTVRAWGANIYGQLGDGGF 312

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG-DIKQI 170
             +   R        P   +    V  VAA  + S  +  +G V +WG        ++Q 
Sbjct: 313 SLEGNPR--------PVAVSKLTDVVSVAASTSLSFAVHSDGTVSSWGSNVDGALGVEQR 364

Query: 171 S---VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           S   VP +V GL  V  ++VG ++ +AL  DG + +WGNN+ GQLG G T  R  P PV 
Sbjct: 365 SNSRVPSKVFGLTDVATVSVGGYYAVALMGDGTVRSWGNNDSGQLGDG-TYIRHTPTPVP 423

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+G+T V  +AG  H  A+  DG    WG  +  +LG    +  ++  P +V  L    
Sbjct: 424 GLTGVTAV--SAGEDHVVAVLSDGSPRVWGDNQFMQLGR-PPESVNRGGPVQVPGLTEAS 480

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +  V+ G THS+AL  DG ++++G      LG G      +P   P  +  P+ AG    
Sbjct: 481 L--VAAGKTHSLALLADGTVWAWGDNSFSALGLGD-----EPGASPTPVQVPKLAG---- 529

Query: 348 RRWIAKLVACGGRHTLAIV 366
                + +A G   +LA++
Sbjct: 530 ----VRSLAAGENSSLAVL 544



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 138/308 (44%), Gaps = 47/308 (15%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +  T  E+  S VN ++N  +       +H  A D   R   +         E+ +    
Sbjct: 36  NSPTLVESTQSAVNLMANETVT------FHVAAKDGAQRTLGFSWEASAGVLEQQQSTAT 89

Query: 116 T-------------GRILRRDIVIPQRCAPKLIVR------------QVAAGGTHSVVLT 150
           T             G  ++  + I    AP +  R             VAAG  HS+++ 
Sbjct: 90  TSDVRWKGPECLPAGTRVKVTVTITNGVAPAITHRFGLSVVACPGAPAVAAGRYHSLMVR 149

Query: 151 REGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
            +G V  WG  +   D     VP    GL  V+ ++ G  H LAL+ DG +WAWG+N  G
Sbjct: 150 PDGTVLEWGLSYLRFDGGVRPVP----GLTDVRAVSAGNEHALALRTDGTVWAWGSNFAG 205

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G    RS P+ V GL+   ++ ++A G+ S AL  DG V+ WG  E G+LG  D  
Sbjct: 206 QLGDGTKTSRSTPVQVVGLT--EVIAVSAAGYSSLALRKDGTVWAWGDNESGQLG--DGT 261

Query: 271 KSSKMVPQKVNLLAGEDIVQVS---CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
              ++ P +V      D+V+V+    G  HS+A+  DG + ++G   +G+LG G     G
Sbjct: 262 MEGRLTPVQV-----LDLVRVTGLAAGRGHSLAVLADGTVRAWGANIYGQLGDGGFSLEG 316

Query: 328 QPMEVPIN 335
            P  V ++
Sbjct: 317 NPRPVAVS 324



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 155/350 (44%), Gaps = 56/350 (16%)

Query: 40  VRSVVAGSRNSLAICDDGK---------------TKTE-NIPSQVNALSNTKIVQAAIGG 83
           VR+V AG+ ++LA+  DG                TKT  + P QV  L  T+++  +  G
Sbjct: 177 VRAVSAGNEHALALRTDGTVWAWGSNFAGQLGDGTKTSRSTPVQVVGL--TEVIAVSAAG 234

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           +  LA+   G  +AWG NE GQ G+        GR+       P +    + V  +AAG 
Sbjct: 235 YSSLALRKDGTVWAWGDNESGQLGDGTME----GRL------TPVQVLDLVRVTGLAAGR 284

Query: 144 THSVVLTREGHVWTWGQPW--PPGD----IKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
            HS+ +  +G V  WG       GD    ++    PV V  L  V  +A     + A+  
Sbjct: 285 GHSLAVLADGTVRAWGANIYGQLGDGGFSLEGNPRPVAVSKLTDVVSVAASTSLSFAVHS 344

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           DG + +WG+N  G LG         P  V GL+ +  V +  GG+++ AL  DG V  WG
Sbjct: 345 DGTVSSWGSNVDGALGVEQRSNSRVPSKVFGLTDVATVSV--GGYYAVALMGDGTVRSWG 402

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
             + G+LG G   + +   P  V  L G  +  VS G  H VA+  DG    +G     +
Sbjct: 403 NNDSGQLGDGTYIRHT---PTPVPGLTG--VTAVSAGEDHVVAVLSDGSPRVWGDNQFMQ 457

Query: 318 LGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           LG     V  G P++VP           G+     A LVA G  H+LA++
Sbjct: 458 LGRPPESVNRGGPVQVP-----------GLTE---ASLVAAGKTHSLALL 493


>gi|88855032|ref|ZP_01129697.1| hypothetical protein A20C1_04101 [marine actinobacterium PHSC20C1]
 gi|88815560|gb|EAR25417.1| hypothetical protein A20C1_04101 [marine actinobacterium PHSC20C1]
          Length = 524

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 152/349 (43%), Gaps = 34/349 (9%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           M S  +I AWG    GQLG  +        +V   +      V AG+ +SLA+  DG   
Sbjct: 64  MGSDGNIYAWGYNSSGQLGNNSILNSSVPVLVSTPDGVTFTQVSAGADHSLAVGSDGNAY 123

Query: 59  -------------TKT-ENIPSQVNA---LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                        T T  ++P  V+A    S   I Q   GG+H LAV   G  Y+WG N
Sbjct: 124 AWGRNTDGRLGNGTSTGSSVPLLVSAGAVPSGVTISQVMAGGFHSLAVGSNGDIYSWGYN 183

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPK-LIVRQVAAGGTHSVVLTREGHVWTWGQ 160
             GQ G      D T       + +     P  +   QV+AG  HS+ +   G  + WG+
Sbjct: 184 RSGQLG------DGTTLASSVPLKVSAGAVPAGVTFSQVSAGDRHSLAIGSNGKTYAWGE 237

Query: 161 P----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                   G I +   P  V     V    ++ G  H+LA+  DG  +AWGNN+ GQLG 
Sbjct: 238 ARGGQLGIGSISRTPAPALVSAPAGVSFTQVSAGDLHSLAVGSDGKAYAWGNNDSGQLGN 297

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
             T     P+ V  + GL +  ++AG  HS A+  DG  Y WG   +G+L  G+N  ++ 
Sbjct: 298 ATTTSSLAPVLVSPMGGLAVTQVSAGADHSLAIGADGNAYAWGLNVNGQL--GNNTITTS 355

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
            VP  V    G    ++  GG HS+    D + +++G    G+LG G  
Sbjct: 356 TVPVMVTAPDGVTFTRIEAGGLHSLTAASDENTYTWGANSFGQLGNGTS 404



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 152/347 (43%), Gaps = 46/347 (13%)

Query: 43  VVAGSRNSLAICDDGKTKT----------------ENIPSQVNALSNTKIVQAAIGGWHC 86
           V AG  +SLA+  DG                     ++P  V+        Q + G  H 
Sbjct: 54  VSAGINHSLAMGSDGNIYAWGYNSSGQLGNNSILNSSVPVLVSTPDGVTFTQVSAGADHS 113

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK-LIVRQVAAGGTH 145
           LAV   G AYAWG N  G+ G                +++     P  + + QV AGG H
Sbjct: 114 LAVGSDGNAYAWGRNTDGRLGNGTSTGSSV------PLLVSAGAVPSGVTISQVMAGGFH 167

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE-----QVKLIAVGAFHNLALQ 196
           S+ +   G +++WG         G     SVP++V             ++ G  H+LA+ 
Sbjct: 168 SLAVGSNGDIYSWGYNRSGQLGDGTTLASSVPLKVSAGAVPAGVTFSQVSAGDRHSLAIG 227

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +G  +AWG    GQLG G       P  V   +G++   ++AG  HS A+  DG+ Y W
Sbjct: 228 SNGKTYAWGEARGGQLGIGSISRTPAPALVSAPAGVSFTQVSAGDLHSLAVGSDGKAYAW 287

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G  + G+LG  +   +S + P  V+ + G  + QVS G  HS+A+  DG+ +++G   +G
Sbjct: 288 GNNDSGQLG--NATTTSSLAPVLVSPMGGLAVTQVSAGADHSLAIGADGNAYAWGLNVNG 345

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +LG     T+     VP+ + AP    DGV    I      GG H+L
Sbjct: 346 QLGNNTITTS----TVPVMVTAP----DGVTFTRI----EAGGLHSL 380



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 125/269 (46%), Gaps = 22/269 (8%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
             Q + G  H LA+   G  YAWG N  GQ G           IL   + +       + 
Sbjct: 51  FTQVSAGINHSLAMGSDGNIYAWGYNSSGQLGNN--------SILNSSVPVLVSTPDGVT 102

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGLE-----QVKLIA 186
             QV+AG  HS+ +  +G+ + WG+        G     SVP+ V          +  + 
Sbjct: 103 FTQVSAGADHSLAVGSDGNAYAWGRNTDGRLGNGTSTGSSVPLLVSAGAVPSGVTISQVM 162

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG---LSGLTLVDIAAGGWH 243
            G FH+LA+  +G +++WG N  GQLG G T   S P+ V      +G+T   ++AG  H
Sbjct: 163 AGGFHSLAVGSNGDIYSWGYNRSGQLGDGTTLASSVPLKVSAGAVPAGVTFSQVSAGDRH 222

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S A+  +G+ Y WG    G+LG G   ++    P  V+  AG    QVS G  HS+A+  
Sbjct: 223 SLAIGSNGKTYAWGEARGGQLGIGSISRTPA--PALVSAPAGVSFTQVSAGDLHSLAVGS 280

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           DG  +++G  D G+LG     ++  P+ V
Sbjct: 281 DGKAYAWGNNDSGQLGNATTTSSLAPVLV 309



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 135/324 (41%), Gaps = 40/324 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKA---LEPYKVRSVVAGSRNSLAI------------ 53
           AWG   DG+LG G +       +V A        +  V+AG  +SLA+            
Sbjct: 124 AWGRNTDGRLGNGTSTGSSVPLLVSAGAVPSGVTISQVMAGGFHSLAVGSNGDIYSWGYN 183

Query: 54  ----CDDGKTKTENIPSQVNA---LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                 DG T   ++P +V+A    +     Q + G  H LA+   G+ YAWG    GQ 
Sbjct: 184 RSGQLGDGTTLASSVPLKVSAGAVPAGVTFSQVSAGDRHSLAIGSNGKTYAWGEARGGQL 243

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPP 164
           G         G I R            +   QV+AG  HS+ +  +G  + WG       
Sbjct: 244 G--------IGSISRTPAPALVSAPAGVSFTQVSAGDLHSLAVGSDGKAYAWGNNDSGQL 295

Query: 165 GDIKQIS--VPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
           G+    S   PV V   G   V  ++ GA H+LA+  DG  +AWG N  GQLG       
Sbjct: 296 GNATTTSSLAPVLVSPMGGLAVTQVSAGADHSLAIGADGNAYAWGLNVNGQLGNNTITTS 355

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ V    G+T   I AGG HS     D   Y WG    G+LG G +D S  +VP  +
Sbjct: 356 TVPVMVTAPDGVTFTRIEAGGLHSLTAASDENTYTWGANSFGQLGNGTSDGS--LVPVAI 413

Query: 281 NLLAGEDIVQVSCGGTHSVALTRD 304
           +      I +VS GG     L++ 
Sbjct: 414 SRF--PVITEVSFGGVVGTELSQS 435



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 98/185 (52%), Gaps = 16/185 (8%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           ++ G  H+LA+  DG ++AWG N  GQLG       S P+ V    G+T   ++AG  HS
Sbjct: 54  VSAGINHSLAMGSDGNIYAWGYNSSGQLGNNSILNSSVPVLVSTPDGVTFTQVSAGADHS 113

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN---LLAGEDIVQVSCGGTHSVAL 301
            A+  DG  Y WGR   GRLG G +  SS  VP  V+   + +G  I QV  GG HS+A+
Sbjct: 114 LAVGSDGNAYAWGRNTDGRLGNGTSTGSS--VPLLVSAGAVPSGVTISQVMAGGFHSLAV 171

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN-IPAPRNAGDGVDRRWIAKLVACGGR 360
             +G I+S+G    G+LG G  + +  P++V    +PA      GV        V+ G R
Sbjct: 172 GSNGDIYSWGYNRSGQLGDGTTLASSVPLKVSAGAVPA------GVTFSQ----VSAGDR 221

Query: 361 HTLAI 365
           H+LAI
Sbjct: 222 HSLAI 226



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 18/188 (9%)

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDI 237
           +   ++ +V A   L +   G+ +A     +G      + P +    V G L G+    +
Sbjct: 1   MFSFRVASVVALSALLVGMSGSAFAAPAETFG------SGPTAGGTTVSGVLPGVVFTQV 54

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           +AG  HS A+  DG +Y WG    G+L  G+N   +  VP  V+   G    QVS G  H
Sbjct: 55  SAGINHSLAMGSDGNIYAWGYNSSGQL--GNNSILNSSVPVLVSTPDGVTFTQVSAGADH 112

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           S+A+  DG+ +++GR   GRLG G    +  P+ V        +AG       I++++A 
Sbjct: 113 SLAVGSDGNAYAWGRNTDGRLGNGTSTGSSVPLLV--------SAGAVPSGVTISQVMA- 163

Query: 358 GGRHTLAI 365
           GG H+LA+
Sbjct: 164 GGFHSLAV 171


>gi|196012194|ref|XP_002115960.1| hypothetical protein TRIADDRAFT_59918 [Trichoplax adhaerens]
 gi|190581736|gb|EDV21812.1| hypothetical protein TRIADDRAFT_59918 [Trichoplax adhaerens]
          Length = 897

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 54/324 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWG   +GQLG+G  +E    C++KA                               +
Sbjct: 1   MFAWGKAIEGQLGLGGIDEN---CILKA-------------------------------T 26

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V+  +N  I   + G  H + +   G+ Y+ G N+YGQ G    R+ +  R  R D   
Sbjct: 27  HVDLTTNHTIKLISCGLNHTILLLQDGQIYSCGSNDYGQTG----RQRNNKRFARIDAFE 82

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQIS-VPVRVQGL 179
             R     I    + G  H++ +  +  ++ WG            ++KQ    P +++ L
Sbjct: 83  SMR-----ITNVSSNGANHNLAINDKNCIYAWGDNSDGQLGVTDQNLKQFYRTPRQIKSL 137

Query: 180 EQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
            +  ++  A G  H+LA+  DG +++WG+N YGQLG        +P  +  LSG  +V I
Sbjct: 138 SKFAVVQVACGQSHSLAVINDGTVFSWGSNRYGQLGIDSNVSSVEPKQILKLSGFYIVQI 197

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           AAGG HS A+T+ G +  WG+   G+LG G ND    + P  V+ L  + I   +CG  H
Sbjct: 198 AAGGAHSLAITNSGALLTWGKNSFGQLGLGTND--GVLSPTCVSSLRSQHIAYAACGEDH 255

Query: 298 SVALTRDGHIFSFGRGDHGRLGYG 321
           +  LT++G +F+FG G  G+LG+ 
Sbjct: 256 TAVLTKEGGVFTFGAGSSGQLGHN 279



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 16/186 (8%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           +KLI+ G  H + L +DG +++ G+N+YGQ  TG  +   +   +     + + ++++ G
Sbjct: 36  IKLISCGLNHTILLLQDGQIYSCGSNDYGQ--TGRQRNNKRFARIDAFESMRITNVSSNG 93

Query: 242 W-HSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             H+ A+ D   +Y WG    G+LG  D N K     P+++  L+   +VQV+CG +HS+
Sbjct: 94  ANHNLAINDKNCIYAWGDNSDGQLGVTDQNLKQFYRTPRQIKSLSKFAVVQVACGQSHSL 153

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+  DG +FS+G   +G+LG    V++ +P ++             +   +I + +A GG
Sbjct: 154 AVINDGTVFSWGSNRYGQLGIDSNVSSVEPKQIL-----------KLSGFYIVQ-IAAGG 201

Query: 360 RHTLAI 365
            H+LAI
Sbjct: 202 AHSLAI 207



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 127/314 (40%), Gaps = 80/314 (25%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA-GSRNSLAICD---------- 55
           I + GS + GQ G   N +R     + A E  ++ +V + G+ ++LAI D          
Sbjct: 55  IYSCGSNDYGQTGRQRNNKR--FARIDAFESMRITNVSSNGANHNLAINDKNCIYAWGDN 112

Query: 56  -DGK--TKTENI------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
            DG+     +N+      P Q+ +LS   +VQ A G  H LAV + G  ++WG N YGQ 
Sbjct: 113 SDGQLGVTDQNLKQFYRTPRQIKSLSKFAVVQVACGQSHSLAVINDGTVFSWGSNRYGQL 172

Query: 107 GEEPERKD-DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
           G +      +  +IL+              + Q+AAGG HS+ +T  G + TWG+     
Sbjct: 173 GIDSNVSSVEPKQILK---------LSGFYIVQIAAGGAHSLAITNSGALLTWGK----- 218

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                                                    N +GQLG G       P  
Sbjct: 219 -----------------------------------------NSFGQLGLGTNDGVLSPTC 237

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L    +   A G  H+  LT +G V+ +G G  G+L  G N  S    PQ V  L G
Sbjct: 238 VSSLRSQHIAYAACGEDHTAVLTKEGGVFTFGAGSSGQL--GHNSLSHHCSPQMVVDLMG 295

Query: 286 EDIVQVSCGGTHSV 299
             + Q++CG  +++
Sbjct: 296 IVVTQITCGRFYAL 309



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 50/157 (31%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++ +WGS   GQLGI +N        V ++EP                            
Sbjct: 160 TVFSWGSNRYGQLGIDSN--------VSSVEP---------------------------- 183

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            Q+  LS   IVQ A GG H LA+ + G    WG N +GQ G           +   D V
Sbjct: 184 KQILKLSGFYIVQIAAGGAHSLAITNSGALLTWGKNSFGQLG-----------LGTNDGV 232

Query: 126 IPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWG 159
           +   C   L  + +   A G  H+ VLT+EG V+T+G
Sbjct: 233 LSPTCVSSLRSQHIAYAACGEDHTAVLTKEGGVFTFG 269



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WG+   G+LG G  D++  +    V+L     I  +SCG  H++ L +DG I+S G 
Sbjct: 1   MFAWGKAIEGQLGLGGIDENCILKATHVDLTTNHTIKLISCGLNHTILLLQDGQIYSCGS 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            D+G+ G  R            N    R   D  +   I  + + G  H LAI
Sbjct: 61  NDYGQTGRQRN-----------NKRFAR--IDAFESMRITNVSSNGANHNLAI 100



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)

Query: 201 LWAWGNNEYGQLGTG--DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           ++AWG    GQLG G  D     +   V   +  T+  I+ G  H+  L  DG++Y  G 
Sbjct: 1   MFAWGKAIEGQLGLGGIDENCILKATHVDLTTNHTIKLISCGLNHTILLLQDGQIYSCGS 60

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC-GGTHSVALTRDGHIFSFGRGDHGR 317
            ++G+ G   N+K       +++      I  VS  G  H++A+     I+++G    G+
Sbjct: 61  NDYGQTGRQRNNKRFA----RIDAFESMRITNVSSNGANHNLAINDKNCIYAWGDNSDGQ 116

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           LG      T Q ++     P    +      ++    VACG  H+LA++
Sbjct: 117 LG-----VTDQNLKQFYRTPRQIKSLS----KFAVVQVACGQSHSLAVI 156


>gi|405354387|ref|ZP_11023754.1| RCC1 repeat domain protein [Chondromyces apiculatus DSM 436]
 gi|397092349|gb|EJJ23118.1| RCC1 repeat domain protein [Myxococcus sp. (contaminant ex DSM
           436)]
          Length = 837

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 167/357 (46%), Gaps = 54/357 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           S+ AWGS   GQLG G+   R     +  L   K  SV  GS +++ +  DG  +T    
Sbjct: 455 SVWAWGSNYYGQLGDGSRRSRSTPVRLAGLTEGKTVSV--GSWHAVLLRQDGSLRTWGSG 512

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        +  P Q   LS  K V AA    H +AV   G  ++WG N+  Q G+
Sbjct: 513 YSDVLGDGTTYSKDAAPVQAPELSGVKAVAAAYE--HSVAVRGDGTVWSWGLNQDDQLGD 570

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG----THSVVLTREGHVWTWGQ---- 160
              R             +P +         VAAGG      +V L  +G VW+WG     
Sbjct: 571 GTFRPSS----------VPVQVLGITGATAVAAGGDTLLAFTVALREDGTVWSWGNNYFG 620

Query: 161 -----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 WP      + VP    GL  V  IA G  H +AL+++G++W+WG N  GQLG G
Sbjct: 621 MLGHPAWPSTTQGAVQVP----GLMDVTAIAAGNLHAVALRKNGSVWSWGRNSAGQLGDG 676

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
               R  P+P++ L+ +    I AG   + AL DDG V+ WG  + G+LG  D   +++ 
Sbjct: 677 TNIQRDSPVPLRELANVKA--ITAGRDFAVALHDDGTVWAWGANDSGQLG--DGTFATRP 732

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +PQ+V  L G  +V V  G  H++AL  DG ++++G  D G+LG G + T   P+++
Sbjct: 733 LPQQVQGLTG--VVAVDAGDDHTLALRNDGTVWAWGNNDLGQLGDGTRTTQPTPVQM 787



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 165/349 (47%), Gaps = 46/349 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           WG G    LG      ++W+ + V+  +    +++ AG  +++A+  DG           
Sbjct: 359 WGWGRANLLG---GSTQDWLTMPVQVPDLADCKALSAGDEHTVALRADGTVWVWGTDDFG 415

Query: 60  -------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                   ++  P Q   L   K V A  G    +A+ + G  +AWG N YGQ G+   R
Sbjct: 416 QLGNGGVPSDAKPVQAQGLMAVKAVAA--GNDWTVAIGEDGSVWAWGSNYYGQLGDGSRR 473

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--GD---I 167
              T          P R A     + V+ G  H+V+L ++G + TWG  +    GD    
Sbjct: 474 SRST----------PVRLAGLTEGKTVSVGSWHAVLLRQDGSLRTWGSGYSDVLGDGTTY 523

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            + + PV+   L  VK +A    H++A++ DG +W+WG N+  QLG G  +P S P+ V 
Sbjct: 524 SKDAAPVQAPELSGVKAVAAAYEHSVAVRGDGTVWSWGLNQDDQLGDGTFRPSSVPVQVL 583

Query: 228 GLSGLTLVDIAAGG----WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           G++G T V  AAGG      + AL +DG V+ WG    G LG      +++   Q   L+
Sbjct: 584 GITGATAV--AAGGDTLLAFTVALREDGTVWSWGNNYFGMLGHPAWPSTTQGAVQVPGLM 641

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              D+  ++ G  H+VAL ++G ++S+GR   G+LG G  +    P+ +
Sbjct: 642 ---DVTAIAAGNLHAVALRKNGSVWSWGRNSAGQLGDGTNIQRDSPVPL 687



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 150/331 (45%), Gaps = 44/331 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           S+  WGSG    LG G    ++    V+A E   V++V A   +S+A+            
Sbjct: 505 SLRTWGSGYSDVLGDGTTYSKD-AAPVQAPELSGVKAVAAAYEHSVAVRGDGTVWSWGLN 563

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLA----VDDQGRAYAWGGNEYGQ 105
                 DG  +  ++P QV  ++    V A  GG   LA    + + G  ++WG N +G 
Sbjct: 564 QDDQLGDGTFRPSSVPVQVLGITGATAVAA--GGDTLLAFTVALREDGTVWSWGNNYFGM 621

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ---- 160
            G         G +            P L+ V  +AAG  H+V L + G VW+WG+    
Sbjct: 622 LGHPAWPSTTQGAV----------QVPGLMDVTAIAAGNLHAVALRKNGSVWSWGRNSAG 671

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G   Q   PV ++ L  VK I  G    +AL +DG +WAWG N+ GQLG G    R
Sbjct: 672 QLGDGTNIQRDSPVPLRELANVKAITAGRDFAVALHDDGTVWAWGANDSGQLGDGTFATR 731

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  VQGL+G+  VD  AG  H+ AL +DG V+ WG  + G+LG    D +    P  V
Sbjct: 732 PLPQQVQGLTGVVAVD--AGDDHTLALRNDGTVWAWGNNDLGQLG----DGTRTTQPTPV 785

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            +     +  V+ G   SV L  +G ++ +G
Sbjct: 786 QMQGFRKVSAVAAGFISSVVLLENGTVWGWG 816



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 166/354 (46%), Gaps = 48/354 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++  WG+ + GQLG G          V+A     V++V AG+  ++AI +DG        
Sbjct: 405 TVWVWGTDDFGQLGNGGVPSD--AKPVQAQGLMAVKAVAAGNDWTVAIGEDGSVWAWGSN 462

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     ++ + P ++  L+  K V  ++G WH + +   G    WG       G+ 
Sbjct: 463 YYGQLGDGSRRSRSTPVRLAGLTEGKTV--SVGSWHAVLLRQDGSLRTWGSGYSDVLGD- 519

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWG----QPWPP 164
                  G    +D    Q  AP+L  V+ VAA   HSV +  +G VW+WG         
Sbjct: 520 -------GTTYSKDAAPVQ--APELSGVKAVAAAYEHSVAVRGDGTVWSWGLNQDDQLGD 570

Query: 165 GDIKQISVPVRVQGLEQVKLIAVG-----AFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           G  +  SVPV+V G+     +A G     AF  +AL+EDG +W+WGNN +G LG      
Sbjct: 571 GTFRPSSVPVQVLGITGATAVAAGGDTLLAF-TVALREDGTVWSWGNNYFGMLGHPAWPS 629

Query: 220 RSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            +Q  + V GL  +T   IAAG  H+ AL  +G V+ WGR   G+LG G N +    VP 
Sbjct: 630 TTQGAVQVPGLMDVTA--IAAGNLHAVALRKNGSVWSWGRNSAGQLGDGTNIQRDSPVP- 686

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              L    ++  ++ G   +VAL  DG ++++G  D G+LG G   T   P +V
Sbjct: 687 ---LRELANVKAITAGRDFAVALHDDGTVWAWGANDSGQLGDGTFATRPLPQQV 737



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 156/347 (44%), Gaps = 41/347 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAICDDGK-----T 59
           S+  WG    GQLG    E +  +   V  L    V ++ AG   ++A+  DG      T
Sbjct: 261 SVWTWGDNRSGQLGDAGRESQNHIPAQVPGLA--SVVAIAAGGSRTVAVRQDGTVWTWGT 318

Query: 60  KTEN------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
           K  N       P QV  L  T ++ A     H + +   G  + WG            R 
Sbjct: 319 KQSNRQDFNPTPVQVPGL--TDVIAADASDNHVVVLRTDGTVWGWG------------RA 364

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQ 169
           +  G   +  + +P +       + ++AG  H+V L  +G VW WG         G +  
Sbjct: 365 NLLGGSTQDWLTMPVQVPDLADCKALSAGDEHTVALRADGTVWVWGTDDFGQLGNGGVPS 424

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            + PV+ QGL  VK +A G    +A+ EDG++WAWG+N YGQLG G  + RS P+ + GL
Sbjct: 425 DAKPVQAQGLMAVKAVAAGNDWTVAIGEDGSVWAWGSNYYGQLGDGSRRSRSTPVRLAGL 484

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +    V +  G WH+  L  DG +  WG G    LG G    S    P +   L+G  + 
Sbjct: 485 TEGKTVSV--GSWHAVLLRQDGSLRTWGSGYSDVLGDG-TTYSKDAAPVQAPELSG--VK 539

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            V+    HSVA+  DG ++S+G     +LG G    T +P  VP+ +
Sbjct: 540 AVAAAYEHSVAVRGDGTVWSWGLNQDDQLGDG----TFRPSSVPVQV 582



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 177/416 (42%), Gaps = 86/416 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR-SVVAGSRNSLAICDDGKTKTENIP 65
           + AWG+ E  QLG G  + R  V  +  +   K R + VA  +   +I   G      + 
Sbjct: 165 VQAWGNNESTQLGRGEPQYRT-VSGLTGVTAVKSRLAHVAALKEDGSIWTWGSNAASQLG 223

Query: 66  SQVNALSNTKIVQA---------AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           + ++A S    +Q          A+G  H +A+   G  + WG N  GQ G       D 
Sbjct: 224 ADISAGSRVTPMQVPGLTGATAIAVGDSHTVALLKDGSVWTWGDNRSGQLG-------DA 276

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------QPWP---P 164
           GR  +    IP +      V  +AAGG+ +V + ++G VWTWG          P P   P
Sbjct: 277 GRESQNH--IPAQVPGLASVVAIAAGGSRTVAVRQDGTVWTWGTKQSNRQDFNPTPVQVP 334

Query: 165 GDIKQI-----------------------------------SVPVRVQGLEQVKLIAVGA 189
           G    I                                   ++PV+V  L   K ++ G 
Sbjct: 335 GLTDVIAADASDNHVVVLRTDGTVWGWGRANLLGGSTQDWLTMPVQVPDLADCKALSAGD 394

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H +AL+ DG +W WG +++GQLG G     ++P+  QGL  + +  +AAG   + A+ +
Sbjct: 395 EHTVALRADGTVWVWGTDDFGQLGNGGVPSDAKPVQAQGL--MAVKAVAAGNDWTVAIGE 452

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG   +G+L  GD  + S+  P  V L    +   VS G  H+V L +DG + +
Sbjct: 453 DGSVWAWGSNYYGQL--GDGSRRSRSTP--VRLAGLTEGKTVSVGSWHAVLLRQDGSLRT 508

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +G G    LG G   TT      P+   AP  +G         K VA    H++A+
Sbjct: 509 WGSGYSDVLGDG---TTYSKDAAPVQ--APELSG--------VKAVAAAYEHSVAV 551



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 143/325 (44%), Gaps = 52/325 (16%)

Query: 51  LAICDD-GKTKTENIPSQVNALS--NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           + I DD G +  E+    +  L+     +V AA  G H L V +Q +  AWG NE  Q G
Sbjct: 118 VTIADDVGNSIFESFQPLLGGLTCGTRGLVIAAGVGRHALVVTEQQKVQAWGNNESTQLG 177

Query: 108 E-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-- 164
             EP+ +  +G  L     +  R A             H   L  +G +WTWG       
Sbjct: 178 RGEPQYRTVSG--LTGVTAVKSRLA-------------HVAALKEDGSIWTWGSNAASQL 222

Query: 165 -GDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             DI   S   P++V GL     IAVG  H +AL +DG++W WG+N  GQLG    + ++
Sbjct: 223 GADISAGSRVTPMQVPGLTGATAIAVGDSHTVALLKDGSVWTWGDNRSGQLGDAGRESQN 282

Query: 222 Q-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  V GL+  ++V IAAGG  + A+  DG V+ WG  +  R  F          P  V
Sbjct: 283 HIPAQVPGLA--SVVAIAAGGSRTVAVRQDGTVWTWGTKQSNRQDFN---------PTPV 331

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            +    D++       H V L  DG ++ +GR +   LG   +     P++VP       
Sbjct: 332 QVPGLTDVIAADASDNHVVVLRTDGTVWGWGRAN--LLGGSTQDWLTMPVQVP------- 382

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAI 365
              D  D     K ++ G  HT+A+
Sbjct: 383 ---DLAD----CKALSAGDEHTVAL 400


>gi|440800955|gb|ELR21981.1| regulator of chromosome condensation (RCC1) repeat domain
           containing protein [Acanthamoeba castellanii str. Neff]
          Length = 447

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 162/355 (45%), Gaps = 59/355 (16%)

Query: 19  GIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------------------- 57
           G G++ ++     V+AL   +VR V AG  +SL    DG                     
Sbjct: 90  GHGDHVDKLRPKCVEALARERVRDVSAGLYHSLVATKDGGLLSFGYGSANVVVDGRLGHG 149

Query: 58  KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
             +T+ IP  V +LS  +IV+ A G  H L + DQG  +++G    G  G   + +    
Sbjct: 150 DQRTQMIPRPVLSLSGVRIVKVAAGAHHSLVLSDQGNVFSFGVGIDGSLGHGDQAR---- 205

Query: 118 RILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                      +  PKLI       V  +AAG  HS+V+   G V+++G         GD
Sbjct: 206 -----------QLVPKLISSLQREKVVDIAAGSAHSLVVAESGDVYSFGLGSEGALGHGD 254

Query: 167 IKQISVPVRVQGLEQ---VKLIAVGAFHNLAL------QEDGALWAWGNNEYGQLGTGDT 217
                VP +++   Q   VK +A G  H+L L      +++G + ++G N YGQLG G  
Sbjct: 255 TDMSLVPKKIEHFVQRPAVK-VAAGGSHSLVLSKLYVLEQEGRVLSFGQNSYGQLGLGHF 313

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R    P Q       V+I AG  HS  LT+DG VY +G  +HG+LG G ND      P
Sbjct: 314 S-RMIASPAQVQVEAAAVEIEAGAHHSLVLTNDGRVYSFGLAQHGQLGHG-NDLRDNPEP 371

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  L  E IV V+ G   S+ L+ +G +FSFG G +GRLG G +    QP  V
Sbjct: 372 TLIQSLERERIVDVAAGNNFSLVLSAEGTVFSFGCGKNGRLGKGDESNATQPTVV 426


>gi|444911573|ref|ZP_21231747.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444717927|gb|ELW58746.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 708

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 150/291 (51%), Gaps = 25/291 (8%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NS+    DG T    +P +V  LS   +V  A GG H LAV   G  +AWG N  GQ G+
Sbjct: 37  NSVGQLGDGTTSLRRVPVRVLGLSG--VVTVAAGGGHSLAVHSDGTVWAWGNNSSGQLGD 94

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                   G    R    P R      V  VAAGG HS+ ++ +G VW WG         
Sbjct: 95  --------GSFDNR--AEPVRVRGLSGVVAVAAGGYHSLAVSADGTVWAWGNNSSGQLGD 144

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G     + PVRV+G   V  +A G  H+LA++ DG LWAWG+N YGQLG       S+P+
Sbjct: 145 GSFDNRAEPVRVRGSSGVVAVAAGGAHSLAVRSDGILWAWGDNLYGQLGNRGEFNSSEPV 204

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM--VPQKVNL 282
            V  ++G   V ++AG  HS A++ DG V+ WG   HG+LG     +++ +  +P +V  
Sbjct: 205 QVLRVTG--GVTVSAGANHSLAVSADGTVWAWGDNSHGQLGIA---RTTPLLSIPGRVPE 259

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + G   V ++ G  HS+A+  DG ++++G   HG+LG G  V   +P  VP
Sbjct: 260 VRGS--VAMAAGDNHSLAVRDDGTVWAWGSNGHGQLGNGFMVDNSEPGRVP 308



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 172/378 (45%), Gaps = 52/378 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWGS   GQLG G   +      V  LE   V +V AGS +SLA+ DDG        
Sbjct: 281 TVWAWGSNGHGQLGNGFMVDNSEPGRVPGLE--GVGAVAAGSNHSLAVRDDGTVWAWGSN 338

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    T  + +       + +V  A   +H LAV   G A+AWG N +G+ G+   
Sbjct: 339 VEGQRGDGTTGQLSAPTRVPGVSGVVGVAANVFHSLAVSADGSAWAWGHNSHGELGDGST 398

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
           R              P R      V  VAAG +HS+ L  +G V  WG         G  
Sbjct: 399 RNSPA----------PVRVDGLKEVVAVAAGSSHSLALLADGTVLAWGDNTFGQLGDGTR 448

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
              SVP +V+GL  V  +A G+ H+LAL  DG +W WG N  GQLG G T  R +P+ V+
Sbjct: 449 ASHSVPAQVRGLRGVVAVAAGSSHSLALLADGTVWTWGYNLNGQLGDGTTTYRYEPVAVK 508

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL G  +V +AAGG HS A+  DG  + WG    G+L  GD   +S+  P +V   A   
Sbjct: 509 GLEG--VVAVAAGGNHSLAVRSDGTAWAWGENVKGQL--GDGTLTSRPAPVEVKAAAKAV 564

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
                     S+A+  DG  +++G    G+LG G   +   PM V       + AG+ V 
Sbjct: 565 AAAQGL----SLAVGSDGFPWAWGNNSSGQLGDGSTTSRPMPMRV-------QGAGEVV- 612

Query: 348 RRWIAKLVACGGRHTLAI 365
                  VA G  H+LA+
Sbjct: 613 ------AVAAGNGHSLAL 624



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 146/290 (50%), Gaps = 33/290 (11%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A GG H L+V   G  +A GGN  GQ G       D    LRR   +P R      V  V
Sbjct: 16  ATGGSHSLSVHQDGTVWAVGGNSVGQLG-------DGTTSLRR---VPVRVLGLSGVVTV 65

Query: 140 AAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           AAGG HS+ +  +G VW WG         G     + PVRV+GL  V  +A G +H+LA+
Sbjct: 66  AAGGGHSLAVHSDGTVWAWGNNSSGQLGDGSFDNRAEPVRVRGLSGVVAVAAGGYHSLAV 125

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
             DG +WAWGNN  GQLG G    R++P+ V+G SG+  V       HS A+  DG ++ 
Sbjct: 126 SADGTVWAWGNNSSGQLGDGSFDNRAEPVRVRGSSGVVAVAAGGA--HSLAVRSDGILWA 183

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG      SS+ V Q + +  G   V VS G  HS+A++ DG ++++G   H
Sbjct: 184 WGDNLYGQLGNRGEFNSSEPV-QVLRVTGG---VTVSAGANHSLAVSADGTVWAWGDNSH 239

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG  R   T   + +P  +P  R           +  +A G  H+LA+
Sbjct: 240 GQLGIAR---TTPLLSIPGRVPEVRG----------SVAMAAGDNHSLAV 276



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 172/389 (44%), Gaps = 67/389 (17%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           S  ++ AWG+   GQLG G+ + R     V+ L    V +V AG  +SLA+  DG     
Sbjct: 77  SDGTVWAWGNNSSGQLGDGSFDNRAEPVRVRGLS--GVVAVAAGGYHSLAVSADGTVWAW 134

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        +N    V    ++ +V  A GG H LAV   G  +AWG N YGQ G 
Sbjct: 135 GNNSSGQLGDGSFDNRAEPVRVRGSSGVVAVAAGGAHSLAVRSDGILWAWGDNLYGQLGN 194

Query: 109 EPE-RKDDTGRILRRD----------------------------------------IVIP 127
             E    +  ++LR                                          + IP
Sbjct: 195 RGEFNSSEPVQVLRVTGGVTVSAGANHSLAVSADGTVWAWGDNSHGQLGIARTTPLLSIP 254

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVK 183
            R         +AAG  HS+ +  +G VW WG         G +   S P RV GLE V 
Sbjct: 255 GRVPEVRGSVAMAAGDNHSLAVRDDGTVWAWGSNGHGQLGNGFMVDNSEPGRVPGLEGVG 314

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            +A G+ H+LA+++DG +WAWG+N  GQ G G T   S   P +      +V +AA  +H
Sbjct: 315 AVAAGSNHSLAVRDDGTVWAWGSNVEGQRGDGTTGQLSA--PTRVPGVSGVVGVAANVFH 372

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S A++ DG  + WG   HG LG    D S++  P  V +   +++V V+ G +HS+AL  
Sbjct: 373 SLAVSADGSAWAWGHNSHGELG----DGSTRNSPAPVRVDGLKEVVAVAAGSSHSLALLA 428

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           DG + ++G    G+LG G + +   P +V
Sbjct: 429 DGTVLAWGDNTFGQLGDGTRASHSVPAQV 457



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 153/337 (45%), Gaps = 48/337 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           S  AWG    G+LG G+         V  L+  +V +V AGS +SLA+  DG        
Sbjct: 381 SAWAWGHNSHGELGDGSTRNSPAPVRVDGLK--EVVAVAAGSSHSLALLADGTVLAWGDN 438

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                      + ++P+QV  L    +V  A G  H LA+   G  + WG N  GQ G  
Sbjct: 439 TFGQLGDGTRASHSVPAQVRGLRG--VVAVAAGSSHSLALLADGTVWTWGYNLNGQLG-- 494

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ--PW 162
                        D     R  P  +     V  VAAGG HS+ +  +G  W WG+    
Sbjct: 495 -------------DGTTTYRYEPVAVKGLEGVVAVAAGGNHSLAVRSDGTAWAWGENVKG 541

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             GD    S P  V+     K +A     +LA+  DG  WAWGNN  GQLG G T  R  
Sbjct: 542 QLGDGTLTSRPAPVEVKAAAKAVAAAQGLSLAVGSDGFPWAWGNNSSGQLGDGSTTSRPM 601

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ VQG     +V +AAG  HS AL+ +G V+ WG+   G+LG G  D+  ++ P +V  
Sbjct: 602 PMRVQGAG--EVVAVAAGNGHSLALSPEGGVWAWGQNARGQLGEGTLDR--RLAPTRVQG 657

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           L+G   V        S+A+  DG ++S+G    G+LG
Sbjct: 658 LSGVVAVAAGG--AFSLAVRDDGSVWSWGDNAFGQLG 692



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC-------------- 54
           AWG+   GQLG G+   R     V+     +V +V AG+ +SLA+               
Sbjct: 582 AWGNNSSGQLGDGSTTSRPMPMRVQGAG--EVVAVAAGNGHSLALSPEGGVWAWGQNARG 639

Query: 55  --DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
              +G       P++V  LS    V A       LAV D G  ++WG N +GQ G  P
Sbjct: 640 QLGEGTLDRRLAPTRVQGLSGVVAVAAGGA--FSLAVRDDGSVWSWGDNAFGQLGNAP 695


>gi|307686853|ref|ZP_07629299.1| regulator of chromosome condensation RCC1 [Clostridium
           cellulovorans 743B]
          Length = 671

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 165/347 (47%), Gaps = 42/347 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
           +WG  ++G LG G          VK L    + ++ AG  + +A+  DG   T       
Sbjct: 58  SWGFNQNGHLGDGTTSNSNSPVQVKGLN--GITAISAGWAHFVALKSDGTVWTWGVGYSG 115

Query: 62  ---------ENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                       P+ +N L+    + A   GW H LA+   G  ++WG N+YGQ G    
Sbjct: 116 ELGDGTNSLRTTPAPINGLTGITAISA---GWNHTLALKADGTLWSWGQNQYGQLG---- 168

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDI 167
               TG     +I  P +   ++ +  +++GG HS+V+  +G VW+WG         G  
Sbjct: 169 ----TGNTTNSNI--PLQVPGQIGITSISSGGGHSLVIKNDGTVWSWGCNNFGQLGNGTN 222

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                P ++ GL  +  ++ G  H+ AL+ DG +W WG N  G+L  G+      P+   
Sbjct: 223 SNNPTPHQISGLNGIINVSAGVIHSTALKSDGTVWNWGCNFRGELANGNKIDSYIPVQAN 282

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+G+  + I AG   S+A+  DG  + WG  ++G+LG G   KS    P +V+ L+G  
Sbjct: 283 GLNGI--IAITAGWEFSSAIKSDGTFWVWGVNDYGQLGNGS--KSDVTSPMQVSSLSG-- 336

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           I  +  G T++VAL  DG+IF+FG   +G+LG G    +  P  V I
Sbjct: 337 ITAIDTGATYTVALKTDGNIFAFGENTYGQLGNGTTTGSTTPELVSI 383



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 20/259 (7%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           +  + G    +A+ + G  ++WG N+ G  G+      ++          P +      +
Sbjct: 38  IAVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNSNS----------PVQVKGLNGI 87

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
             ++AG  H V L  +G VWTWG  +      G     + P  + GL  +  I+ G  H 
Sbjct: 88  TAISAGWAHFVALKSDGTVWTWGVGYSGELGDGTNSLRTTPAPINGLTGITAISAGWNHT 147

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL+ DG LW+WG N+YGQLGTG+T   + P+ V G  G+T   I++GG HS  + +DG 
Sbjct: 148 LALKADGTLWSWGQNQYGQLGTGNTTNSNIPLQVPGQIGIT--SISSGGGHSLVIKNDGT 205

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG    G+LG G N  S+   P +++ L G  I+ VS G  HS AL  DG ++++G 
Sbjct: 206 VWSWGCNNFGQLGNGTN--SNNPTPHQISGLNG--IINVSAGVIHSTALKSDGTVWNWGC 261

Query: 313 GDHGRLGYGRKVTTGQPME 331
              G L  G K+ +  P++
Sbjct: 262 NFRGELANGNKIDSYIPVQ 280



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 10/198 (5%)

Query: 139 VAAGGTHSVVLTREGHVWTWG--QPWPPGD--IKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V+AG T ++ L  +G VW+WG  Q    GD      + PV+V+GL  +  I+ G  H +A
Sbjct: 40  VSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNSNSPVQVKGLNGITAISAGWAHFVA 99

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L+ DG +W WG    G+LG G    R+ P P+ GL+G+T   I+AG  H+ AL  DG ++
Sbjct: 100 LKSDGTVWTWGVGYSGELGDGTNSLRTTPAPINGLTGITA--ISAGWNHTLALKADGTLW 157

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ ++G+LG G+   S+  +P +V    G  I  +S GG HS+ +  DG ++S+G  +
Sbjct: 158 SWGQNQYGQLGTGNTTNSN--IPLQVPGQIG--ITSISSGGGHSLVIKNDGTVWSWGCNN 213

Query: 315 HGRLGYGRKVTTGQPMEV 332
            G+LG G       P ++
Sbjct: 214 FGQLGNGTNSNNPTPHQI 231



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           V G      ++ G    +AL+ DG +W+WG N+ G LG G T   + P+ V+GL+G+T  
Sbjct: 31  VAGTSGYIAVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNSNSPVQVKGLNGITA- 89

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            I+AG  H  AL  DG V+ WG G  G LG G N  S +  P  +N L G  I  +S G 
Sbjct: 90  -ISAGWAHFVALKSDGTVWTWGVGYSGELGDGTN--SLRTTPAPINGLTG--ITAISAGW 144

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            H++AL  DG ++S+G+  +G+LG G    +  P++VP
Sbjct: 145 NHTLALKADGTLWSWGQNQYGQLGTGNTTNSNIPLQVP 182


>gi|387540886|gb|AFJ71070.1| putative E3 ubiquitin-protein ligase HERC6 isoform 1 [Macaca
           mulatta]
          Length = 1020

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G          R  R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRR--------RAPRGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  NVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  +  L    ++ +SCG  H+  L +DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNSSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 140/335 (41%), Gaps = 70/335 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG       E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E              +P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------VPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWA 203
            WG         Q+++  R   ++  K +++GA  NL              L +DG ++ 
Sbjct: 204 GWGS----NSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFT 259

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           +G+N  GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+   
Sbjct: 260 FGDNSSGQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVIS 311

Query: 264 LGFGDNDKSSKMVPQKVN-------LLAGEDIVQV 291
            G G +D S    P+ +        L++ ED+V V
Sbjct: 312 FGHGPSDTSKPTHPEALTGNFDIRCLISAEDLVDV 346



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 66/188 (35%)

Query: 231 GLTLVDIAAGGWHSTALTDD---------------------------------------- 250
           G  L+  A+G  HS  L  +                                        
Sbjct: 22  GAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVS 81

Query: 251 ------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
                       G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG  HS
Sbjct: 82  CGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGHYHS 140

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           +AL++D  +FS+G+  HG+LG G++V +   P  V         + +G+    +A+ VA 
Sbjct: 141 LALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRV--------RSLEGIP---LAQ-VAA 188

Query: 358 GGRHTLAI 365
           GG H+ A+
Sbjct: 189 GGAHSFAL 196


>gi|302876126|ref|YP_003844759.1| chromosome condensation regulator RCC1 [Clostridium cellulovorans
           743B]
 gi|302578983|gb|ADL52995.1| regulator of chromosome condensation RCC1 [Clostridium
           cellulovorans 743B]
          Length = 852

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 165/347 (47%), Gaps = 42/347 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
           +WG  ++G LG G          VK L    + ++ AG  + +A+  DG   T       
Sbjct: 58  SWGFNQNGHLGDGTTSNSNSPVQVKGLN--GITAISAGWAHFVALKSDGTVWTWGVGYSG 115

Query: 62  ---------ENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                       P+ +N L+    + A   GW H LA+   G  ++WG N+YGQ G    
Sbjct: 116 ELGDGTNSLRTTPAPINGLTGITAISA---GWNHTLALKADGTLWSWGQNQYGQLG---- 168

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDI 167
               TG     +I  P +   ++ +  +++GG HS+V+  +G VW+WG         G  
Sbjct: 169 ----TGNTTNSNI--PLQVPGQIGITSISSGGGHSLVIKNDGTVWSWGCNNFGQLGNGTN 222

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                P ++ GL  +  ++ G  H+ AL+ DG +W WG N  G+L  G+      P+   
Sbjct: 223 SNNPTPHQISGLNGIINVSAGVIHSTALKSDGTVWNWGCNFRGELANGNKIDSYIPVQAN 282

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+G+  + I AG   S+A+  DG  + WG  ++G+LG G   KS    P +V+ L+G  
Sbjct: 283 GLNGI--IAITAGWEFSSAIKSDGTFWVWGVNDYGQLGNGS--KSDVTSPMQVSSLSG-- 336

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           I  +  G T++VAL  DG+IF+FG   +G+LG G    +  P  V I
Sbjct: 337 ITAIDTGATYTVALKTDGNIFAFGENTYGQLGNGTTTGSTTPELVSI 383



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 132/259 (50%), Gaps = 20/259 (7%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           +  + G    +A+ + G  ++WG N+ G  G+      ++          P +      +
Sbjct: 38  IAVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNSNS----------PVQVKGLNGI 87

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
             ++AG  H V L  +G VWTWG  +      G     + P  + GL  +  I+ G  H 
Sbjct: 88  TAISAGWAHFVALKSDGTVWTWGVGYSGELGDGTNSLRTTPAPINGLTGITAISAGWNHT 147

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL+ DG LW+WG N+YGQLGTG+T   + P+ V G  G+T   I++GG HS  + +DG 
Sbjct: 148 LALKADGTLWSWGQNQYGQLGTGNTTNSNIPLQVPGQIGIT--SISSGGGHSLVIKNDGT 205

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG    G+LG G N  S+   P +++ L G  I+ VS G  HS AL  DG ++++G 
Sbjct: 206 VWSWGCNNFGQLGNGTN--SNNPTPHQISGLNG--IINVSAGVIHSTALKSDGTVWNWGC 261

Query: 313 GDHGRLGYGRKVTTGQPME 331
              G L  G K+ +  P++
Sbjct: 262 NFRGELANGNKIDSYIPVQ 280



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 10/198 (5%)

Query: 139 VAAGGTHSVVLTREGHVWTWG--QPWPPGD--IKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V+AG T ++ L  +G VW+WG  Q    GD      + PV+V+GL  +  I+ G  H +A
Sbjct: 40  VSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNSNSPVQVKGLNGITAISAGWAHFVA 99

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L+ DG +W WG    G+LG G    R+ P P+ GL+G+T   I+AG  H+ AL  DG ++
Sbjct: 100 LKSDGTVWTWGVGYSGELGDGTNSLRTTPAPINGLTGITA--ISAGWNHTLALKADGTLW 157

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ ++G+LG G+   S+  +P +V    G  I  +S GG HS+ +  DG ++S+G  +
Sbjct: 158 SWGQNQYGQLGTGNTTNSN--IPLQVPGQIG--ITSISSGGGHSLVIKNDGTVWSWGCNN 213

Query: 315 HGRLGYGRKVTTGQPMEV 332
            G+LG G       P ++
Sbjct: 214 FGQLGNGTNSNNPTPHQI 231



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           V G      ++ G    +AL+ DG +W+WG N+ G LG G T   + P+ V+GL+G+T  
Sbjct: 31  VAGTSGYIAVSAGNTTTIALKNDGTVWSWGFNQNGHLGDGTTSNSNSPVQVKGLNGITA- 89

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            I+AG  H  AL  DG V+ WG G  G LG G N  S +  P  +N L G  I  +S G 
Sbjct: 90  -ISAGWAHFVALKSDGTVWTWGVGYSGELGDGTN--SLRTTPAPINGLTG--ITAISAGW 144

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            H++AL  DG ++S+G+  +G+LG G    +  P++VP
Sbjct: 145 NHTLALKADGTLWSWGQNQYGQLGTGNTTNSNIPLQVP 182


>gi|383319324|ref|YP_005380165.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320694|gb|AFC99646.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 427

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 165/349 (47%), Gaps = 53/349 (15%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDG---------- 57
           AWGS  DG+ GI  +E  E+V    A+     V S+ AG    +A+  DG          
Sbjct: 36  AWGSNYDGECGIPASEGLEYVTRPVAIHGLDNVTSIDAGELFVIALKKDGTVLTWGWSIF 95

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        +++    P  V  LS+   + A  G   C+ +   G  + WG N YG
Sbjct: 96  GDLGYVPNNTTYNQSREHFSPLPVPGLSDITGISA--GQHFCVVLKSDGTVWTWGDNRYG 153

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIV-----RQVAAGGTHSVVLTREGHVWTWG 159
           Q G+  +   D             R  P ++V       V+AG  ++  +  +G VW WG
Sbjct: 154 QLGDGKQVTID------DYYAGAHRAEPGMVVGLSNVTYVSAGPINAAAVKDDGTVWVWG 207

Query: 160 QPW---------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                           +  I+ PV+V+GLE VK + +G  H LAL+ DG +WAWG+N YG
Sbjct: 208 ANSRSLFGEAGENSTGLLAITTPVQVKGLENVKEVKLGHAHALALKNDGTVWAWGDNSYG 267

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG    +  + PI V GLS +T   I+AG  HS AL  DG V+ WG+ ++G+L  GD  
Sbjct: 268 QLGVAGKEFSNMPIMVHGLSNVT--QISAGEGHSVALEGDGTVWTWGQNKYGQL--GDGT 323

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            S+   P KV+L     I  VS  G +++AL  +G I+ +G  ++G+LG
Sbjct: 324 TSNSYSPVKVHL---PPIKAVSARGFNTMALDYNGTIWIWGNNNYGQLG 369



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 125/268 (46%), Gaps = 30/268 (11%)

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LA+D+ G A+AWG N  G+CG       +    + R + I         V  + AG   
Sbjct: 25  SLALDENGTAWAWGSNYDGECGIPASEGLE---YVTRPVAIHGLDN----VTSIDAGELF 77

Query: 146 SVVLTREGHVWTWGQP------WPPGDI-----KQISVPVRVQGLEQVKLIAVGAFHNLA 194
            + L ++G V TWG        + P +      ++   P+ V GL  +  I+ G    + 
Sbjct: 78  VIALKKDGTVLTWGWSIFGDLGYVPNNTTYNQSREHFSPLPVPGLSDITGISAGQHFCVV 137

Query: 195 LQEDGALWAWGNNEYGQLGTGDT---------QPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           L+ DG +W WG+N YGQLG G             R++P  V GLS +T V  +AG  ++ 
Sbjct: 138 LKSDGTVWTWGDNRYGQLGDGKQVTIDDYYAGAHRAEPGMVVGLSNVTYV--SAGPINAA 195

Query: 246 ALTDDGEVYGWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           A+ DDG V+ WG       G  G+N      +   V +   E++ +V  G  H++AL  D
Sbjct: 196 AVKDDGTVWVWGANSRSLFGEAGENSTGLLAITTPVQVKGLENVKEVKLGHAHALALKND 255

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           G ++++G   +G+LG   K  +  P+ V
Sbjct: 256 GTVWAWGDNSYGQLGVAGKEFSNMPIMV 283



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 103/245 (42%), Gaps = 45/245 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE-REWVCVVKALEP------YKVRSVVAGSRNSLAI 53
           + S  ++  WG    GQLG G      ++       EP        V  V AG  N+ A+
Sbjct: 138 LKSDGTVWTWGDNRYGQLGDGKQVTIDDYYAGAHRAEPGMVVGLSNVTYVSAGPINAAAV 197

Query: 54  CDDGKT-------------KTEN--------IPSQVNALSNTKIVQAAIGGWHCLAVDDQ 92
            DDG                 EN         P QV  L N K V+  +G  H LA+ + 
Sbjct: 198 KDDGTVWVWGANSRSLFGEAGENSTGLLAITTPVQVKGLENVKEVK--LGHAHALALKND 255

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G  +AWG N YGQ G   +   +          +P        V Q++AG  HSV L  +
Sbjct: 256 GTVWAWGDNSYGQLGVAGKEFSN----------MPIMVHGLSNVTQISAGEGHSVALEGD 305

Query: 153 GHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           G VWTWGQ        G       PV+V  L  +K ++   F+ +AL  +G +W WGNN 
Sbjct: 306 GTVWTWGQNKYGQLGDGTTSNSYSPVKVH-LPPIKAVSARGFNTMALDYNGTIWIWGNNN 364

Query: 209 YGQLG 213
           YGQLG
Sbjct: 365 YGQLG 369



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 32/247 (12%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQPW------PPGD-IKQISVPVRVQGLEQVKLIAVGAFH 191
           +A G T S+ L   G  W WG  +      P  + ++ ++ PV + GL+ V  I  G   
Sbjct: 18  IAQGPTVSLALDENGTAWAWGSNYDGECGIPASEGLEYVTRPVAIHGLDNVTSIDAGELF 77

Query: 192 NLALQEDGALWAWGNNEYGQLG-----TGDTQPRSQ--PIPVQGLSGLTLVDIAAGGWHS 244
            +AL++DG +  WG + +G LG     T   Q R    P+PV GLS +T   I+AG    
Sbjct: 78  VIALKKDGTVLTWGWSIFGDLGYVPNNTTYNQSREHFSPLPVPGLSDIT--GISAGQHFC 135

Query: 245 TALTDDGEVYGWGRGEHGRLGFG-----DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             L  DG V+ WG   +G+LG G     D+  +     +   ++   ++  VS G  ++ 
Sbjct: 136 VVLKSDGTVWTWGDNRYGQLGDGKQVTIDDYYAGAHRAEPGMVVGLSNVTYVSAGPINAA 195

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTG-QPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           A+  DG ++ +G       G   + +TG   +  P+ +    N           K V  G
Sbjct: 196 AVKDDGTVWVWGANSRSLFGEAGENSTGLLAITTPVQVKGLEN----------VKEVKLG 245

Query: 359 GRHTLAI 365
             H LA+
Sbjct: 246 HAHALAL 252



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR---SQPIPVQGLSGLTLVDIA 238
              IA G   +LAL E+G  WAWG+N  G+ G   ++     ++P+ + GL  +T +D  
Sbjct: 15  FAFIAQGPTVSLALDENGTAWAWGSNYDGECGIPASEGLEYVTRPVAIHGLDNVTSID-- 72

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL---AGEDIVQVSCGG 295
           AG     AL  DG V  WG    G LG+  N+ +     +  + L      DI  +S G 
Sbjct: 73  AGELFVIALKKDGTVLTWGWSIFGDLGYVPNNTTYNQSREHFSPLPVPGLSDITGISAGQ 132

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
              V L  DG ++++G   +G+LG G++VT
Sbjct: 133 HFCVVLKSDGTVWTWGDNRYGQLGDGKQVT 162


>gi|296134345|ref|YP_003641592.1| Ig domain-containing protein group 2 domain-containing protein
            [Thermincola potens JR]
 gi|296032923|gb|ADG83691.1| Ig domain protein group 2 domain protein [Thermincola potens JR]
          Length = 4140

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 143/279 (51%), Gaps = 32/279 (11%)

Query: 67   QVNALSNTKIVQAAI---GGWHCLAVDDQGRAYAWGGNEYGQCGE-----EPERKDDTGR 118
            +++  +NT    AA    G  + LA+   G  +AWG N+ GQ G       P +      
Sbjct: 2433 RMDIFANTPAFTAAAVYSGTGYSLALKPDGTVWAWGINDQGQLGNGGQDLNPHKN----- 2487

Query: 119  ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
                    P++      V  +A GG H V L  +G VWTWG+        G       P 
Sbjct: 2488 --------PEQVPGLTGVTALAPGGYHVVALKNDGTVWTWGKNDSGQLGDGTYTSRFSPG 2539

Query: 175  RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +V GL  VK +A GA H + L+ DG +WAWGNN YGQLGT  +       PVQ     ++
Sbjct: 2540 QVPGLTGVKAVAAGANHTVVLKTDGTVWAWGNNMYGQLGTSPSVLAKTYSPVQIPGIDSV 2599

Query: 235  VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--PQKVNLLAGEDIVQVS 292
            V+I AG WH+ A   DG V+ WGR   G++G   N  +S +V  P +V+ L G  + +V+
Sbjct: 2600 VEIGAGIWHTLARRADGTVWAWGRNIEGQVG---NGSASAVVDSPAQVSGLTG--VTKVA 2654

Query: 293  CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
             GG H++AL  DG ++++GR D G+LG G  V++  P++
Sbjct: 2655 AGGYHNLALRSDGTVWAWGRNDKGQLGTGNTVSSNVPVQ 2693



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 140/306 (45%), Gaps = 57/306 (18%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
            AWG  + GQLG G  +          L P+K                         P QV
Sbjct: 2466 AWGINDQGQLGNGGQD----------LNPHKN------------------------PEQV 2491

Query: 69   NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
              L  T +   A GG+H +A+ + G  + WG N+ GQ G+        G    R    P 
Sbjct: 2492 PGL--TGVTALAPGGYHVVALKNDGTVWTWGKNDSGQLGD--------GTYTSR--FSPG 2539

Query: 129  RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW------PPGDIKQISVPVRVQGLEQV 182
            +      V+ VAAG  H+VVL  +G VW WG          P  + +   PV++ G++ V
Sbjct: 2540 QVPGLTGVKAVAAGANHTVVLKTDGTVWAWGNNMYGQLGTSPSVLAKTYSPVQIPGIDSV 2599

Query: 183  KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGG 241
              I  G +H LA + DG +WAWG N  GQ+G G        P  V GL+G+T   +AAGG
Sbjct: 2600 VEIGAGIWHTLARRADGTVWAWGRNIEGQVGNGSASAVVDSPAQVSGLTGVT--KVAAGG 2657

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            +H+ AL  DG V+ WGR + G+LG G N  SS +  Q     AG  +V VS     +V +
Sbjct: 2658 YHNLALRSDGTVWAWGRNDKGQLGTG-NTVSSNVPVQTRYDQAGPAVVGVSP-AEGAVDV 2715

Query: 302  TRDGHI 307
             R+ HI
Sbjct: 2716 ARNTHI 2721



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 15/128 (11%)

Query: 185  IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGL----TLVDIAA 239
            IA G  H++A++ D AL  WG N+ GQLG G   +P   P+ V+   G      L  ++ 
Sbjct: 1953 IAAGTDHSMAVRGDSALVGWGANDDGQLGDGHFGEPVPYPVLVRNADGTPWNPVLSGMSP 2012

Query: 240  GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS----SKMVPQKVNLLAGEDIV-----Q 290
            G  H+  L  DG V+ WG    G+LG G    +    SK+ P K   L G+D V     Q
Sbjct: 2013 GSTHTAVLGSDGSVWSWGNNAFGQLGNGSYATAGPPFSKLTPVKAK-LPGDDFVYTTVYQ 2071

Query: 291  VSCGGTHS 298
                GTH+
Sbjct: 2072 ADYTGTHT 2079



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 234  LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED------ 287
              DIAAG  HS A+  D  + GWG  + G+LG G      + VP  V L+   D      
Sbjct: 1950 FTDIAAGTDHSMAVRGDSALVGWGANDDGQLGDG---HFGEPVPYPV-LVRNADGTPWNP 2005

Query: 288  -IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
             +  +S G TH+  L  DG ++S+G    G+LG G   T G P  
Sbjct: 2006 VLSGMSPGSTHTAVLGSDGSVWSWGNNAFGQLGNGSYATAGPPFS 2050


>gi|195345959|ref|XP_002039536.1| GM23027 [Drosophila sechellia]
 gi|194134762|gb|EDW56278.1| GM23027 [Drosophila sechellia]
          Length = 3806

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 178/385 (46%), Gaps = 48/385 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +++ WG  +  QLG     + +     + +   +   +  GS++   +  DGK       
Sbjct: 2642 TVMVWGLNDKEQLGGLKGSKVKVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEG 2701

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T    +P Q+  L    + + A+  GG H LA+   G+ ++WG  E G+ G
Sbjct: 2702 TNGRLGLGVTHNVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLG 2761

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  R+      +    A K  +R VA G +HS  ++ +G ++TWG        
Sbjct: 2762 HGNRTTLDKPRL------VEALRAKK--IRDVACGSSHSAAISSQGELYTWGLGEYGRLG 2813

Query: 164  PGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD      P  V  L   +++ V         LAL EDGA+++WG+ ++G+LG G ++ 
Sbjct: 2814 HGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEG 2873

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P  ++ LSG+ +V I  G   S ALT  GEV+ WG+G++ RLG G +    K  PQ 
Sbjct: 2874 SDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRK--PQP 2931

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            +  L G  ++ V+ G  H +A+T  G ++++G  DHG+ G G      +P  V       
Sbjct: 2932 IGGLRGRRVIHVAVGALHCLAVTDAGQVYAWGDNDHGQQGSGNTFVNKKPALV------- 2984

Query: 340  RNAGDGVDRRWIAKLVACGGRHTLA 364
                 G+D  ++ + VACG  H++A
Sbjct: 2985 ----IGLDAVFVNR-VACGSSHSIA 3004



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 162/319 (50%), Gaps = 40/319 (12%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+    +S  + +  A G      V   G+ YA G    G+ G            +  
Sbjct: 2663 KVPTFSQTISRLRPIHIAGGSKSLFIVSQDGKVYACGEGTNGRLGLG----------VTH 2712

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
            ++ +P +     + +V++VA  +GG H++ LT +G V++WG+        G+   +  P 
Sbjct: 2713 NVPLPHQLPVLHQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPR 2772

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             V+ L  ++++ +A G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L+G 
Sbjct: 2773 LVEALRAKKIRDVACGSSHSAAISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGR 2832

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             +V +A G     + ALT+DG V+ WG G+ G+LG G ++ S    P ++  L+G  +VQ
Sbjct: 2833 RVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSD--TPHEIERLSGIGVVQ 2890

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVPINIPAPRNAGDGVDR 348
            + CG   S+ALTR G ++++G+GD+ RLG+G  + V   QP+            G    R
Sbjct: 2891 IECGAQFSLALTRAGEVWTWGKGDYYRLGHGGDQHVRKPQPI------------GGLRGR 2938

Query: 349  RWIAKLVACGGRHTLAIVE 367
            R I   VA G  H LA+ +
Sbjct: 2939 RVIH--VAVGALHCLAVTD 2955



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 33/328 (10%)

Query: 38  YKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAA--IGGWHCLAV 89
           ++++ V       L +  +GK       K E  P  +  +++   +  A    G H LA+
Sbjct: 226 FQIKQVACCETQMLILSQEGKLYTWRLAKPEAEPLPMEEVAHDVFISIAGHCEGRHFLAI 285

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV-IPQRCAPKLIVRQVAAGGTHSVV 148
           D    AY+WG  E  + G      D   R +   I  + Q C     V+ V  G ++S  
Sbjct: 286 DSNHNAYSWGTGEDHRLGH----GDTHARAVPTKIAALEQHC-----VQSVYCGCSYSAA 336

Query: 149 LTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGA 200
           +T  G++ TWG+        G+    S+P  V  L    ++ V    G  H+LAL  +G 
Sbjct: 337 ITCGGNLLTWGRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGL 396

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++AWG+ +YG+LG G+     QPI V+ L  +    + AG   S AL+ +G++Y WG+  
Sbjct: 397 VFAWGDGDYGKLGNGNCNGSLQPILVESLPRVQ--RVFAGSQFSVALSSEGQLYTWGKAT 454

Query: 261 HGRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              LG    ++S +   VP+ V+ L  + IV V+    H +AL+  G +F +GR D  ++
Sbjct: 455 C--LGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQI 512

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGV 346
                V++   +  PI +  P     G+
Sbjct: 513 CPA-SVSSEPLLRTPILVSLPTFPASGI 539



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 14/206 (6%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF-- 190
           +  ++QVA   T  ++L++EG ++TW    P  +      P+ ++ +     I++     
Sbjct: 225 RFQIKQVACCETQMLILSQEGKLYTWRLAKPEAE------PLPMEEVAHDVFISIAGHCE 278

Query: 191 --HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H LA+  +   ++WG  E  +LG GDT  R+ P  +  L    +  +  G  +S A+T
Sbjct: 279 GRHFLAIDSNHNAYSWGTGEDHRLGHGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAIT 338

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGH 306
             G +  WGRG + RLG G++D  S  +P  V  L+   +V V+ G    HS+ALT +G 
Sbjct: 339 CGGNLLTWGRGTYARLGHGNSDDRS--LPTLVVALSDHMVVDVALGSGDAHSLALTSEGL 396

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +F++G GD+G+LG G    + QP+ V
Sbjct: 397 VFAWGDGDYGKLGNGNCNGSLQPILV 422



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 36/236 (15%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           S  +  +WG+GED +LG G+   R     + ALE + V+SV  G   S AI   G   T 
Sbjct: 287 SNHNAYSWGTGEDHRLGHGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAITCGGNLLTW 346

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYG 104
                           ++P+ V ALS+  +V  A+G    H LA+  +G  +AWG  +YG
Sbjct: 347 GRGTYARLGHGNSDDRSLPTLVVALSDHMVVDVALGSGDAHSLALTSEGLVFAWGDGDYG 406

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           + G      +  G +  + I++     P+  V++V AG   SV L+ EG ++TWG+    
Sbjct: 407 KLGN----GNCNGSL--QPILV--ESLPR--VQRVFAGSQFSVALSSEGQLYTWGKATCL 456

Query: 165 G------DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G       ++  SVP  V  L+  ++  +AV   H LAL   G ++ WG N+  Q+
Sbjct: 457 GHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRNDSQQI 512



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 101/267 (37%), Gaps = 78/267 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            ++S   +  WG GE G+LG G+N  +    +V AL   +V  V  GSR+  +LA+ +DG 
Sbjct: 2795 ISSQGELYTWGLGEYGRLGHGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGA 2854

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  + P ++  LS   +VQ   G    LA+   G  + WG  +
Sbjct: 2855 VFSWGDGDFGKLGRGGSEGSDTPHEIERLSGIGVVQIECGAQFSLALTRAGEVWTWGKGD 2914

Query: 103  Y---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y   G  G++  RK      LR   VI            VA G  H + +T  G V+ W 
Sbjct: 2915 YYRLGHGGDQHVRKPQPIGGLRGRRVI-----------HVAVGALHCLAVTDAGQVYAW- 2962

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                                                         G+N++GQ G+G+T  
Sbjct: 2963 ---------------------------------------------GDNDHGQQGSGNTFV 2977

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
              +P  V GL  + +  +A G  HS A
Sbjct: 2978 NKKPALVIGLDAVFVNRVACGSSHSIA 3004



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + AWG G+ G+LG GN        +V++L   +V+ V AGS+ S+A+  +G+  
Sbjct: 391 LTSEGLVFAWGDGDYGKLGNGNCNGSLQPILVESLP--RVQRVFAGSQFSVALSSEGQLY 448

Query: 61  T------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           T                   ++P  V++L + +IV  A+   HCLA+   G  + WG N+
Sbjct: 449 TWGKATCLGHQLVERSVQGCSVPRLVSSLQHKRIVDVAVSVAHCLALSSSGEVFGWGRND 508

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
             Q        +    +LR  I++     P      +A     S+V T+  H
Sbjct: 509 SQQICPASVSSEP---LLRTPILV---SLPTFPASGIACTSAQSLVWTQSSH 554



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            ++ WG+N  GQLG  +      P P + LS L  V +A G     A+T DG+++  G
Sbjct: 3704 IYGWGHNHRGQLGGLEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATG 3760


>gi|357620246|gb|EHJ72511.1| hypothetical protein KGM_11261 [Danaus plexippus]
          Length = 4305

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 163/360 (45%), Gaps = 39/360 (10%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
            ++  WG    GQLG     +        AL       +V G +   A+  DGK       
Sbjct: 3952 AVYGWGHNHRGQLGGVEGAKVRTPTPCHALAALNPVQLVGGEQTLFAVTPDGKVYATGYG 4011

Query: 60   ----------KTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       + + P+ + ++ +  I + A   GG HCLA+   G  Y+WG  E G+ G
Sbjct: 4012 AGGRLGIGGIDSVSQPTLLASIQHVFITKVACNSGGKHCLALSADGEVYSWGEGEDGKLG 4071

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   D  +++             L V  +A GG HS  LT  G ++TWG+       
Sbjct: 4072 HGNRVSYDRPKLIT--------ALSGLEVVCIACGGAHSACLTARGRIYTWGKGRYGRLG 4123

Query: 164  PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD +   +P  V+ L   ++I V    G    L + +D  +W+WG+ +YG+LG G ++ 
Sbjct: 4124 HGDSEDQLIPKLVEALSSFRVIDVACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSEG 4183

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
               P+ +  L GL ++ +  G   S AL   G VY WG+G++ RLG G  +   +  P +
Sbjct: 4184 CKLPMRIDCLKGLRVIKVECGSQFSVALCQCGSVYTWGKGDYHRLGHGSYEHVRR--PMR 4241

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP---MEVPINI 336
            V  + G+ IV ++ G  H VA T  G ++++G  D G+LG G  +   +P   M + +NI
Sbjct: 4242 VTGMQGKMIVSIATGSLHCVACTDTGEVYTWGDNDEGQLGDGTTLAAQRPRLLMALQVNI 4301



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 26/283 (9%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P    ALS  + V  A G      V   G+ +A G    G+ G           +   
Sbjct: 3079 KVPVFSPALSALRPVHIAGGSKTLFIVSHDGKLFACGEGTNGRLG-----------LGHS 3127

Query: 123  DIVIPQRCAPKL---IVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
            + V   R  P L   +VR+VA  +GG H++ LT +G V++WG+        G+   +  P
Sbjct: 3128 NNVSTPRANPYLSHVLVRRVAVHSGGKHALALTADGKVYSWGEGEDGKLGHGNRITLEAP 3187

Query: 174  VRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
              ++ L  E+V  IA G+ H+  +   G L+ WG  EYG+LG GD   +  P  V+ L+ 
Sbjct: 3188 RLIESLAGERVISIACGSAHSACVTARGHLYTWGLGEYGRLGHGDDNIQLVPKMVEALAN 3247

Query: 232  LTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
              ++ +A G     + ALT  G+V+ WG G+ G+LG G +D  +  +P  V  L    + 
Sbjct: 3248 YRVIQVACGSRDAQTLALTACGKVFSWGDGDFGKLGRGGSDGCA--IPMNVERLNSLGVT 3305

Query: 290  QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            QV CG   S+ALTRDG ++++G+GD+ RLG+G      +P  V
Sbjct: 3306 QVECGAQFSLALTRDGEVWTWGKGDYFRLGHGCDAHVRRPTLV 3348



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 32/286 (11%)

Query: 90   DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
            +D  + + WG N+  Q G         G  ++  +  P   A + +   +A G     ++
Sbjct: 3054 NDCPKVFVWGLNDKDQLG------GVKGSKVKVPVFSPALSALRPV--HIAGGSKTLFIV 3105

Query: 150  TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQV--KLIAV--GAFHNLALQEDGAL 201
            + +G ++  G+        G    +S P     L  V  + +AV  G  H LAL  DG +
Sbjct: 3106 SHDGKLFACGEGTNGRLGLGHSNNVSTPRANPYLSHVLVRRVAVHSGGKHALALTADGKV 3165

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  E G+LG G+      P  ++ L+G  ++ IA G  HS  +T  G +Y WG GE+
Sbjct: 3166 YSWGEGEDGKLGHGNRITLEAPRLIESLAGERVISIACGSAHSACVTARGHLYTWGLGEY 3225

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GD++   ++VP+ V  LA   ++QV+CG     ++ALT  G +FS+G GD G+LG
Sbjct: 3226 GRLGHGDDNI--QLVPKMVEALANYRVIQVACGSRDAQTLALTACGKVFSWGDGDFGKLG 3283

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G       PM V       R    GV +      V CG + +LA+
Sbjct: 3284 RGGSDGCAIPMNV------ERLNSLGVTQ------VECGAQFSLAL 3317



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 47/314 (14%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKTK---- 60
            + A G G +G+LG+G++           L    VR V   +G +++LA+  DGK      
Sbjct: 3111 LFACGEGTNGRLGLGHSNNVSTPRANPYLSHVLVRRVAVHSGGKHALALTADGKVYSWGE 3170

Query: 61   ------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        T   P  + +L+  +++  A G  H   V  +G  Y WG  EYG+ G 
Sbjct: 3171 GEDGKLGHGNRITLEAPRLIESLAGERVISIACGSAHSACVTARGHLYTWGLGEYGRLGH 3230

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPWPPGD 166
                 DD  +++ + +           V QVA G     ++ LT  G V++WG     GD
Sbjct: 3231 ----GDDNIQLVPKMV----EALANYRVIQVACGSRDAQTLALTACGKVFSWGD----GD 3278

Query: 167  IKQI--------SVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
              ++        ++P+ V+ L    V  +  GA  +LAL  DG +W WG  +Y +LG G 
Sbjct: 3279 FGKLGRGGSDGCAIPMNVERLNSLGVTQVECGAQFSLALTRDGEVWTWGKGDYFRLGHGC 3338

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
                 +P  V+ L G  ++ +A G  H  A+T + +V+ WG  +HG+ G G     +  V
Sbjct: 3339 DAHVRRPTLVEALRGRRVIHVAVGALHCLAVTSENQVWAWGDNDHGQQGNG-----TTCV 3393

Query: 277  PQKVNLLAGEDIVQ 290
             ++  L+AG + VQ
Sbjct: 3394 NRRPALVAGVEGVQ 3407



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 115/255 (45%), Gaps = 36/255 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +++   + +WG GEDG+LG GN    +   ++ AL   +V  +  G  +S  +   G+  
Sbjct: 4053 LSADGEVYSWGEGEDGKLGHGNRVSYDRPKLITALSGLEVVCIACGGAHSACLTARGRIY 4112

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                + IP  V ALS+ +++  A G      L + D    ++WG  +
Sbjct: 4113 TWGKGRYGRLGHGDSEDQLIPKLVEALSSFRVIDVACGSGDAQTLCITDDDNVWSWGDGD 4172

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            YG+ G    R    G        +P R  C   L V +V  G   SV L + G V+TWG+
Sbjct: 4173 YGKLG----RGGSEG------CKLPMRIDCLKGLRVIKVECGSQFSVALCQCGSVYTWGK 4222

Query: 161  ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G  + +  P+RV G++   +  IA G+ H +A  + G ++ WG+N+ GQLG 
Sbjct: 4223 GDYHRLGHGSYEHVRRPMRVTGMQGKMIVSIATGSLHCVACTDTGEVYTWGDNDEGQLGD 4282

Query: 215  GDTQPRSQPIPVQGL 229
            G T    +P  +  L
Sbjct: 4283 GTTLAAQRPRLLMAL 4297



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 98/244 (40%), Gaps = 55/244 (22%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF----H 191
           ++Q+A     +++LT +G V+T      P D      P  V GLE   +  V       H
Sbjct: 485 IQQIACAEKLALLLTHDGAVYTL-----PYDTM---TPHLVPGLESKTITQVSCHSLGRH 536

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            L     G  W+WG  E G+LG GDT  R  P P+  L+   +V +AAG   S  +T  G
Sbjct: 537 YLCRSSCGGAWSWGIGEDGRLGHGDTAARDAPQPLHHLAHHEVVRVAAGLACSAVITSRG 596

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG----------------- 294
            +Y WGRG  GRLG G  +      P   N    E I+ V+ G                 
Sbjct: 597 ALYTWGRGAQGRLGHGTIENCLTPQPVSFNAHNIERIIDVALGWGEGSTLCCTWEGAVQV 656

Query: 295 -------------------------GTH-SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
                                    G H   ALT  G ++++G+GD  RLG+G   +T  
Sbjct: 657 FGEGEAGTPRALSALAMFRVTRVYTGEHWHAALTDGGQVYTWGKGDGYRLGHGNMESTKI 716

Query: 329 PMEV 332
           P  V
Sbjct: 717 PKLV 720



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 137/325 (42%), Gaps = 47/325 (14%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKT----ENIPSQVNALSNTKIVQAAIG--GWHCLAVDDQ 92
           +++ +    + +L +  DG   T       P  V  L +  I Q +    G H L     
Sbjct: 484 RIQQIACAEKLALLLTHDGAVYTLPYDTMTPHLVPGLESKTITQVSCHSLGRHYLCRSSC 543

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G A++WG  E G+ G         G    RD   P        V +VAAG   S V+T  
Sbjct: 544 GGAWSWGIGEDGRLGH--------GDTAARDAPQPLHHLAHHEVVRVAAGLACSAVITSR 595

Query: 153 GHVWTWGQ----PWPPGDIKQISVP----VRVQGLEQVKLIAVG--AFHNLALQEDGALW 202
           G ++TWG+        G I+    P         +E++  +A+G      L    +GA+ 
Sbjct: 596 GALYTWGRGAQGRLGHGTIENCLTPQPVSFNAHNIERIIDVALGWGEGSTLCCTWEGAVQ 655

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEH 261
            +G  E G            P  +  L+   +  +  G  WH+ ALTD G+VY WG+G+ 
Sbjct: 656 VFGEGEAGT-----------PRALSALAMFRVTRVYTGEHWHA-ALTDGGQVYTWGKGDG 703

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            RLG G+ +  S  +P+ V  L G  IV +S G +H +AL+ +G +F +G  +  ++   
Sbjct: 704 YRLGHGNME--STKIPKLVEALQGIKIVDLSLGASHGIALSSEGVLFVWGTHERTQI--- 758

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGV 346
                  P+  P+    P    +GV
Sbjct: 759 -----SNPVPQPVKAFNPSFKANGV 778



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 200  ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            A++ WG+N  GQLG  +      P P   L+ L  V +  G     A+T DG+VY  G G
Sbjct: 3952 AVYGWGHNHRGQLGGVEGAKVRTPTPCHALAALNPVQLVGGEQTLFAVTPDGKVYATGYG 4011

Query: 260  EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGDHGR 317
              GRLG G  D  S+  P  +  +    I +V+C  GG H +AL+ DG ++S+G G+ G+
Sbjct: 4012 AGGRLGIGGIDSVSQ--PTLLASIQHVFITKVACNSGGKHCLALSADGEVYSWGEGEDGK 4069

Query: 318  LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            LG+G +V+  +P  +         A  G++       +ACGG H+  +
Sbjct: 4070 LGHGNRVSYDRPKLI--------TALSGLE----VVCIACGGAHSACL 4105



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 96/238 (40%), Gaps = 47/238 (19%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
           +WG GEDG+LG G+   R+    +  L  ++V  V AG   S  I   G   T       
Sbjct: 548 SWGIGEDGRLGHGDTAARDAPQPLHHLAHHEVVRVAAGLACSAVITSRGALYTWGRGAQG 607

Query: 62  -------ENI----PSQVNALSNTKIVQAAIGGW---HCLAVDDQGRAYAWGGNEYGQCG 107
                  EN     P   NA +  +I+  A+ GW     L    +G    +G  E G   
Sbjct: 608 RLGHGTIENCLTPQPVSFNAHNIERIIDVAL-GWGEGSTLCCTWEGAVQVFGEGEAG--- 663

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   T R L               V +V  G      LT  G V+TWG+       
Sbjct: 664 --------TPRAL--------SALAMFRVTRVYTGEHWHAALTDGGQVYTWGKGDGYRLG 707

Query: 164 PGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            G+++   +P  V+ L+ +K++  ++GA H +AL  +G L+ WG +E  Q+     QP
Sbjct: 708 HGNMESTKIPKLVEALQGIKIVDLSLGASHGIALSSEGVLFVWGTHERTQISNPVPQP 765


>gi|384939244|gb|AFI33227.1| putative E3 ubiquitin-protein ligase HERC6 isoform 1 [Macaca
           mulatta]
          Length = 1020

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G          R  R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRR--------RAPRGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  NVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  +  L    ++ +SCG  H+  L +DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNSSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 141/335 (42%), Gaps = 70/335 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG       E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E              +P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------VPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWA 203
            WG         Q+++  R   ++  K +++GA  NL              L +DG ++ 
Sbjct: 204 GWGS----NSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFT 259

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           +G+N  GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+   
Sbjct: 260 FGDNSSGQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVIS 311

Query: 264 LGFGDNDKSSKMVPQKVN-------LLAGEDIVQV 291
            G G +DKS    P+ +        L++ ED+V V
Sbjct: 312 FGHGPSDKSKPTHPEALTGNFDIRCLISAEDLVDV 346



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 66/188 (35%)

Query: 231 GLTLVDIAAGGWHSTALTDD---------------------------------------- 250
           G  L+  A+G  HS  L  +                                        
Sbjct: 22  GAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVS 81

Query: 251 ------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
                       G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG  HS
Sbjct: 82  CGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGHYHS 140

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           +AL++D  +FS+G+  HG+LG G++V +   P  V         + +G+    +A+ VA 
Sbjct: 141 LALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRV--------RSLEGIP---LAQ-VAA 188

Query: 358 GGRHTLAI 365
           GG H+ A+
Sbjct: 189 GGAHSFAL 196


>gi|355749434|gb|EHH53833.1| Putative E3 ubiquitin-protein ligase HERC6 [Macaca fascicularis]
          Length = 1020

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G          R  R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRR--------RAPRGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  NVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  +  L    ++ +SCG  H+  L +DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNSSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 140/335 (41%), Gaps = 70/335 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG       E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E              +P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------VPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWA 203
            WG         Q+++  R   ++  K +++GA  NL              L +DG ++ 
Sbjct: 204 GWGS----NSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFT 259

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           +G+N  GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+   
Sbjct: 260 FGDNSSGQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVIS 311

Query: 264 LGFGDNDKSSKMVPQKVN-------LLAGEDIVQV 291
            G G +D S    P+ +        L++ ED+V V
Sbjct: 312 FGHGPSDTSKPTHPEALTGNFDIRCLISAEDLVDV 346



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 66/188 (35%)

Query: 231 GLTLVDIAAGGWHSTALTDD---------------------------------------- 250
           G  L+  A+G  HS  L  +                                        
Sbjct: 22  GAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVS 81

Query: 251 ------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
                       G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG  HS
Sbjct: 82  CGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGHYHS 140

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           +AL++D  +FS+G+  HG+LG G++V +   P  V         + +G+    +A+ VA 
Sbjct: 141 LALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRV--------RSLEGIP---LAQ-VAA 188

Query: 358 GGRHTLAI 365
           GG H+ A+
Sbjct: 189 GGAHSFAL 196


>gi|355569557|gb|EHH25458.1| Putative E3 ubiquitin-protein ligase HERC6 [Macaca mulatta]
          Length = 1020

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G          R  R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRR--------RAPRGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
            V  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  NVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  +  L    ++ +SCG  H+  L +DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDG 255

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRHTL 363
            +F+FG    G+LGY                P P   G  +  R   +   + CG  HTL
Sbjct: 256 KVFTFGDNSSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 141/335 (42%), Gaps = 70/335 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG       E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGEFKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E              +P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------VPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWA 203
            WG         Q+++  R   ++  K +++GA  NL              L +DG ++ 
Sbjct: 204 GWGS----NSAGQLALSGRNVPVQSNKPLSIGALKNLGVIYISCGDEHTAVLIQDGKVFT 259

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           +G+N  GQLG   T  +  P  V+ + GL +  I  G +H+ A       Y    G+   
Sbjct: 260 FGDNSSGQLGYSPTPEKRGPQLVERIDGL-VSQIDCGSYHTLA-------YVHTTGQVIS 311

Query: 264 LGFGDNDKSSKMVPQKVN-------LLAGEDIVQV 291
            G G +DKS    P+ +        L++ ED+V V
Sbjct: 312 FGHGPSDKSKPTHPEALTGNFDIRCLISAEDLVDV 346



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 66/188 (35%)

Query: 231 GLTLVDIAAGGWHSTALTDD---------------------------------------- 250
           G  L+  A+G  HS  L  +                                        
Sbjct: 22  GAELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRRAPRGELPEPIQALETLNVDLVS 81

Query: 251 ------------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
                       G V+ WG G  G+LG G+  + S   P+K+  L G  I+QVSCG  HS
Sbjct: 82  CGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKITTLNGIKIIQVSCGHYHS 140

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           +AL++D  +FS+G+  HG+LG G++V +   P  V         + +G+    +A+ VA 
Sbjct: 141 LALSKDSQVFSWGKNSHGQLGLGKEVPSQASPQRV--------RSLEGIP---LAQ-VAA 188

Query: 358 GGRHTLAI 365
           GG H+ A+
Sbjct: 189 GGAHSFAL 196


>gi|281205822|gb|EFA80011.1| regulator of chromosome condensation domain-containing protein
            [Polysphondylium pallidum PN500]
          Length = 1800

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 78/352 (22%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   +  WG+   GQLG G N                                    K
Sbjct: 1047 ISSDGELFTWGNNSQGQLGHGLN----------------------------------VGK 1072

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
             ++ P +V    ++ I+  + GG H +AVD   + Y+WG + YGQ G             
Sbjct: 1073 YQSTPRRVETFKSSPIIMISCGGEHSVAVDQSFQIYSWGSSRYGQLGH------------ 1120

Query: 121  RRDIVIPQRCAPKL-------IVRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDI 167
               ++ PQ    K+        V  +A G  H++VL + G ++T+G  W        G+ 
Sbjct: 1121 --GVLTPQNLPKKIEDFTGGQKVLAIATGYAHTMVLKKSGDLFTFG--WNDSGQLGLGNF 1176

Query: 168  KQISVPVRVQ-----GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            K  +VP+R++     G+  E++  IA G  H++   ++G +++WG N  GQLG G+ +  
Sbjct: 1177 KNRAVPMRIETSEIVGIHGERITAIAAGHSHSIMCLDNGDIYSWGANSKGQLGHGNIEKS 1236

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             +P  +  L G  ++ I+ G +H+ A+++   VY WG+GEH  LG G N   +++ P+ +
Sbjct: 1237 LRPKQIDELKGKPIIKISCGHFHTVAISELNSVYCWGQGEHMCLGNGSN--KNELSPKMI 1294

Query: 281  NLLAGEDIVQVSCGGTHSVALTR------DGHIFSFGRGDHGRLGYGRKVTT 326
                 + I +V CG  H+  +T        G+++  G G+HG+LG G  + T
Sbjct: 1295 EFFINKKIEKVVCGLYHTATVTAAENGSDRGNVYICGGGEHGKLGTGGDLKT 1346



 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 42/308 (13%)

Query: 75   KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC---- 130
            K V  A G  H   +   G  + WG N  GQ G         G  + +    P+R     
Sbjct: 1033 KAVSVACGWEHIAVISSDGELFTWGNNSQGQLGH--------GLNVGKYQSTPRRVETFK 1084

Query: 131  -APKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQ---GLEQV 182
             +P ++   ++ GG HSV + +   +++WG         G +   ++P +++   G ++V
Sbjct: 1085 SSPIIM---ISCGGEHSVAVDQSFQIYSWGSSRYGQLGHGVLTPQNLPKKIEDFTGGQKV 1141

Query: 183  KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-----GLSGLTLVDI 237
              IA G  H + L++ G L+ +G N+ GQLG G+ + R+ P+ ++     G+ G  +  I
Sbjct: 1142 LAIATGYAHTMVLKKSGDLFTFGWNDSGQLGLGNFKNRAVPMRIETSEIVGIHGERITAI 1201

Query: 238  AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
            AAG  HS    D+G++Y WG    G+LG G+ +KS +  P++++ L G+ I+++SCG  H
Sbjct: 1202 AAGHSHSIMCLDNGDIYSWGANSKGQLGHGNIEKSLR--PKQIDELKGKPIIKISCGHFH 1259

Query: 298  SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
            +VA++    ++ +G+G+H  LG G       P  +   I            + I K+V C
Sbjct: 1260 TVAISELNSVYCWGQGEHMCLGNGSNKNELSPKMIEFFI-----------NKKIEKVV-C 1307

Query: 358  GGRHTLAI 365
            G  HT  +
Sbjct: 1308 GLYHTATV 1315



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 126/244 (51%), Gaps = 30/244 (12%)

Query: 139  VAAGGTHSVVLTREGHVWTWGQPWPPGDI-------KQISVPVRVQGLEQ--VKLIAVGA 189
            VA G  H  V++ +G ++TWG     G +       K  S P RV+  +   + +I+ G 
Sbjct: 1037 VACGWEHIAVISSDGELFTWGNN-SQGQLGHGLNVGKYQSTPRRVETFKSSPIIMISCGG 1095

Query: 190  FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG-LTLVDIAAGGWHSTALT 248
             H++A+ +   +++WG++ YGQLG G   P++ P  ++  +G   ++ IA G  H+  L 
Sbjct: 1096 EHSVAVDQSFQIYSWGSSRYGQLGHGVLTPQNLPKKIEDFTGGQKVLAIATGYAHTMVLK 1155

Query: 249  DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL-----LAGEDIVQVSCGGTHSVALTR 303
              G+++ +G  + G+LG G+    ++ VP ++       + GE I  ++ G +HS+    
Sbjct: 1156 KSGDLFTFGWNDSGQLGLGNF--KNRAVPMRIETSEIVGIHGERITAIAAGHSHSIMCLD 1213

Query: 304  DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            +G I+S+G    G+LG+G    + +P ++           D +  + I K ++CG  HT+
Sbjct: 1214 NGDIYSWGANSKGQLGHGNIEKSLRPKQI-----------DELKGKPIIK-ISCGHFHTV 1261

Query: 364  AIVE 367
            AI E
Sbjct: 1262 AISE 1265



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 172  VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGL 229
            +P  V+  ++   +A G  H   +  DG L+ WGNN  GQLG G    + Q  P  V+  
Sbjct: 1024 MPPLVKNEKKAVSVACGWEHIAVISSDGELFTWGNNSQGQLGHGLNVGKYQSTPRRVETF 1083

Query: 230  SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NLLAGEDI 288
                ++ I+ GG HS A+    ++Y WG   +G+LG G    + + +P+K+ +   G+ +
Sbjct: 1084 KSSPIIMISCGGEHSVAVDQSFQIYSWGSSRYGQLGHGV--LTPQNLPKKIEDFTGGQKV 1141

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            + ++ G  H++ L + G +F+FG  D G+LG G       PM +
Sbjct: 1142 LAIATGYAHTMVLKKSGDLFTFGWNDSGQLGLGNFKNRAVPMRI 1185



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 111/264 (42%), Gaps = 46/264 (17%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-----KVRSVVAGSRNSLAICD 55
            +  +  +  +G  + GQLG+GN + R     ++  E       ++ ++ AG  +S+   D
Sbjct: 1154 LKKSGDLFTFGWNDSGQLGLGNFKNRAVPMRIETSEIVGIHGERITAIAAGHSHSIMCLD 1213

Query: 56   DGKTKT-----------ENI-----PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
            +G   +            NI     P Q++ L    I++ + G +H +A+ +    Y WG
Sbjct: 1214 NGDIYSWGANSKGQLGHGNIEKSLRPKQIDELKGKPIIKISCGHFHTVAISELNSVYCWG 1273

Query: 100  GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR------EG 153
              E+   G    + + + +++  +  I ++      + +V  G  H+  +T        G
Sbjct: 1274 QGEHMCLGNGSNKNELSPKMI--EFFINKK------IEKVVCGLYHTATVTAAENGSDRG 1325

Query: 154  HVWTW-----GQPWPPGDIKQISV----PVRVQGLEQVKLI--AVGAFHNLALQEDGALW 202
            +V+       G+    GD+K        P  +  L  + ++  + G+  +  +  +GAL+
Sbjct: 1326 NVYICGGGEHGKLGTGGDLKTPFFDKPHPAVIPSLNSMNIVGFSSGSEFSAIITNNGALY 1385

Query: 203  AWGNNEYGQLGTGDTQPRSQPIPV 226
             WG   +GQ+G G T+    P  +
Sbjct: 1386 TWGYGNFGQIGNGKTEDMWLPTKI 1409


>gi|427794767|gb|JAA62835.1| Putative hect e3 ubiquitin ligase culex quinquefasciatus hect e3
           ubiquitin ligase, partial [Rhipicephalus pulchellus]
          Length = 1181

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 171/364 (46%), Gaps = 53/364 (14%)

Query: 7   IIAWGSGEDGQLGIG------------NNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + +WG G +G+LG+             +  ER     V+      VR V  G +++L + 
Sbjct: 53  LYSWGLGPNGELGLTQGKDGVDTETPVSQPER-----VRRFGTRAVREVACGHKHTLVLL 107

Query: 55  DDG--------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
            +G              + ++     QV ALS  +I   A G  H LA+ D G+ ++WG 
Sbjct: 108 ANGSVYSCGANDFGQLGQDRSMRKLEQVAALSAHEIRAVACGEAHSLALSDAGQVFSWGC 167

Query: 101 NEYGQ--CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           N  GQ  CG E E +      LR  ++  ++ A   IV Q+A G  H + L   G +++W
Sbjct: 168 NRNGQLGCGTEEESR------LRPKVI--KKLATLHIV-QIACGAVHCLALANNGELFSW 218

Query: 159 GQPWP------PGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYG 210
           G                  +P RV  L  V   L+A GA H++ L   G ++ WG N  G
Sbjct: 219 GGNASGQLGLGRDSTGNERLPRRVSHLVGVPLALVACGAMHSVGLTPSGTVFVWGRNSCG 278

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG  D + R  P  ++ L    +  +  G  H+ ALT DG V+ +G G +G+LG G   
Sbjct: 279 QLGLSDQRDRLHPTVLKPLRSQRIKHVCCGENHTAALTADGGVFTFGAGTYGQLGHG--V 336

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           K ++ VP++V  L G  I Q+SCG  H+VA   + G ++ FG G  G+LG G   ++  P
Sbjct: 337 KVNEAVPRRVVELMGTAISQLSCGRCHTVAYAPQSGRLYIFGLGMSGQLGNGTLESSALP 396

Query: 330 MEVP 333
           + VP
Sbjct: 397 VTVP 400



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 27/240 (11%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQV--------KLIAV 187
           VR+VA G  H++VL   G V++ G      D  Q+     ++ LEQV        + +A 
Sbjct: 93  VREVACGHKHTLVLLANGSVYSCGA----NDFGQLGQDRSMRKLEQVAALSAHEIRAVAC 148

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G  H+LAL + G +++WG N  GQLG G + + R +P  ++ L+ L +V IA G  H  A
Sbjct: 149 GEAHSLALSDAGQVFSWGCNRNGQLGCGTEEESRLRPKVIKKLATLHIVQIACGAVHCLA 208

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           L ++GE++ WG    G+LG G +   ++ +P++V+ L G  +  V+CG  HSV LT  G 
Sbjct: 209 LANNGELFSWGGNASGQLGLGRDSTGNERLPRRVSHLVGVPLALVACGAMHSVGLTPSGT 268

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEV-PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +F +GR   G+LG   +     P  + P+             R    K V CG  HT A+
Sbjct: 269 VFVWGRNSCGQLGLSDQRDRLHPTVLKPL-------------RSQRIKHVCCGENHTAAL 315



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ +  +R    V+K L   +++ V  G  ++ A+  DG   T    
Sbjct: 268 TVFVWGRNSCGQLGLSDQRDRLHPTVLKPLRSQRIKHVCCGENHTAALTADGGVFTFGAG 327

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQ-GRAYAWGGNEYGQCG 107
                       E +P +V  L  T I Q + G  H +A   Q GR Y +G    GQ G
Sbjct: 328 TYGQLGHGVKVNEAVPRRVVELMGTAISQLSCGRCHTVAYAPQSGRLYIFGLGMSGQLG 386


>gi|427780149|gb|JAA55526.1| Putative hect e3 ubiquitin ligase culex quinquefasciatus hect e3
           ubiquitin ligase [Rhipicephalus pulchellus]
          Length = 1175

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 174/369 (47%), Gaps = 63/369 (17%)

Query: 7   IIAWGSGEDGQLGIG------------NNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + +WG G +G+LG+             +  ER     V+      VR V  G +++L + 
Sbjct: 47  LYSWGLGPNGELGLTQGKDGVDTETPVSQPER-----VRRFGTRAVREVACGHKHTLVLL 101

Query: 55  DDGKT--------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
            +G                ++     QV ALS  +I   A G  H LA+ D G+ ++WG 
Sbjct: 102 ANGSVYSCGANDFGQLGQDRSMRKLEQVAALSAHEIRAVACGEAHSLALSDAGQVFSWGC 161

Query: 101 NEYGQ--CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           N  GQ  CG E E +      LR  ++  ++ A   IV Q+A G  H + L   G +++W
Sbjct: 162 NRNGQLGCGTEEESR------LRPKVI--KKLATLHIV-QIACGAVHCLALANNGELFSW 212

Query: 159 GQPWPPGDIK-QI----------SVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWG 205
           G     G+   Q+           +P RV  L  V   L+A GA H++ L   G ++ WG
Sbjct: 213 G-----GNASGQLGLGRDSTGNERLPRRVSHLVGVPLALVACGAMHSVGLTPSGTVFVWG 267

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            N  GQLG  D + R  P  ++ L    +  +  G  H+ ALT DG V+ +G G +G+LG
Sbjct: 268 RNSCGQLGLSDQRDRLHPTVLKPLRSQRIKHVCCGENHTAALTADGGVFTFGAGTYGQLG 327

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKV 324
            G   K ++ VP++V  L G  I Q+SCG  H+VA   + G ++ FG G  G+LG G   
Sbjct: 328 HG--VKVNEAVPRRVVELMGTAISQLSCGRCHTVAYAPQSGRLYIFGLGMSGQLGNGTLE 385

Query: 325 TTGQPMEVP 333
           ++  P+ VP
Sbjct: 386 SSALPVTVP 394



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 122/239 (51%), Gaps = 25/239 (10%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQV--------KLIAV 187
           VR+VA G  H++VL   G V++ G      D  Q+     ++ LEQV        + +A 
Sbjct: 87  VREVACGHKHTLVLLANGSVYSCG----ANDFGQLGQDRSMRKLEQVAALSAHEIRAVAC 142

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G  H+LAL + G +++WG N  GQLG G + + R +P  ++ L+ L +V IA G  H  A
Sbjct: 143 GEAHSLALSDAGQVFSWGCNRNGQLGCGTEEESRLRPKVIKKLATLHIVQIACGAVHCLA 202

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           L ++GE++ WG    G+LG G +   ++ +P++V+ L G  +  V+CG  HSV LT  G 
Sbjct: 203 LANNGELFSWGGNASGQLGLGRDSTGNERLPRRVSHLVGVPLALVACGAMHSVGLTPSGT 262

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +F +GR   G+LG   +     P      +  P        R    K V CG  HT A+
Sbjct: 263 VFVWGRNSCGQLGLSDQRDRLHP-----TVLKPL-------RSQRIKHVCCGENHTAAL 309



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ +  +R    V+K L   +++ V  G  ++ A+  DG   T    
Sbjct: 262 TVFVWGRNSCGQLGLSDQRDRLHPTVLKPLRSQRIKHVCCGENHTAALTADGGVFTFGAG 321

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQ-GRAYAWGGNEYGQCG 107
                       E +P +V  L  T I Q + G  H +A   Q GR Y +G    GQ G
Sbjct: 322 TYGQLGHGVKVNEAVPRRVVELMGTAISQLSCGRCHTVAYAPQSGRLYIFGLGMSGQLG 380


>gi|345856409|ref|ZP_08808895.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
 gi|344330533|gb|EGW41825.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
          Length = 1419

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 164/355 (46%), Gaps = 43/355 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           ++AWGS   GQLG G N +R     V+ L+  +  SV AG  +SLA+  D          
Sbjct: 522 VMAWGSNTYGQLGDGTNIQRSTPVRVQGLKG-QASSVAAGGTHSLALLQDKSVAAWGNND 580

Query: 57  ------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                 G     N  + VN LS+  IV  A G  H LAV   G  +AWG N  GQ G+  
Sbjct: 581 HGQLGDGSFTNRNTAATVNGLSD--IVGIAAGERHSLAVQSDGSVWAWGDNSSGQLGDGT 638

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
            ++  T          P +      V ++AAGG  S+ +T +G VW WG         G 
Sbjct: 639 LKERST----------PVKVKGLSQVTKIAAGGDTSLAITADGKVWAWGNNQDGQLGDGT 688

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIP 225
               S PV V GL  V  ++VG  H LAL+ DG +WAWG+N    LGTG      + P  
Sbjct: 689 TNNQSTPVLVPGLSDVTTVSVGWTHCLALKSDGGVWAWGDNSQSILGTGSADAYCAVPTQ 748

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V+GLSG+T   I+AG   S A+T+ G    WGR +  +LG G   K      Q  N+   
Sbjct: 749 VKGLSGVTA--ISAGNQFSLAMTNQGVAEAWGRNDFNQLGDGSAAKFESTPVQIKNMPLV 806

Query: 286 EDIVQ-VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
             + Q +S GG H++  T      S+G    G+LG G      + + +P  I +P
Sbjct: 807 PVVDQSISAGGYHALCGTLGTR--SWGYNASGQLGLGIT----EHISIPEAISSP 855



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 10/206 (4%)

Query: 120 LRRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREGHVWTWGQ-PWPPGDIKQIS--VPVR 175
           L   +V+PQ   A    +  ++A   +++ +  +G VW WG  P    D    S  VPV+
Sbjct: 34  LPSIMVLPQTAYASGAKITAISANEAYALAMKSDGTVWGWGTGPLGNNDADSNSALVPVQ 93

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            + L  V  I+ G    LAL+ DG +W+WG+N+YG+LG G T  R+ P PV  LSG++  
Sbjct: 94  AKNLTDVIAISAGGDVALALKNDGTVWSWGSNQYGELGDGSTTNRNSPAPVPSLSGISA- 152

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  +  AL +DG V+ WG  ++G LG G  D   +  P +++ L+G  +V ++   
Sbjct: 153 -IATGYSYCLALKNDGTVWAWGSNQNGALGDGTTDD--RKTPVQISGLSG--VVSIAANY 207

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYG 321
             S A+  DG ++++G  D G+LG G
Sbjct: 208 HSSYAIKSDGTVWAWGLNDQGQLGDG 233



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 111/199 (55%), Gaps = 11/199 (5%)

Query: 139 VAAGGTHSVVLTREGHVW---TWGQPWPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLA 194
           V+AG +HS+        W   T+GQ     +I++ S PVRVQGL+ Q   +A G  H+LA
Sbjct: 508 VSAGDSHSLSAGEYVMAWGSNTYGQLGDGTNIQR-STPVRVQGLKGQASSVAAGGTHSLA 566

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L +D ++ AWGNN++GQLG G    R+    V GLS +  V IAAG  HS A+  DG V+
Sbjct: 567 LLQDKSVAAWGNNDHGQLGDGSFTNRNTAATVNGLSDI--VGIAAGERHSLAVQSDGSVW 624

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG    G+LG  D     +  P KV  L+   + +++ GG  S+A+T DG ++++G   
Sbjct: 625 AWGDNSSGQLG--DGTLKERSTPVKVKGLS--QVTKIAAGGDTSLAITADGKVWAWGNNQ 680

Query: 315 HGRLGYGRKVTTGQPMEVP 333
            G+LG G       P+ VP
Sbjct: 681 DGQLGDGTTNNQSTPVLVP 699



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 54/306 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           S+ AWG+ + GQLG G+   R     V  L    +  + AG R+SLA+  DG        
Sbjct: 572 SVAAWGNNDHGQLGDGSFTNRNTAATVNGLS--DIVGIAAGERHSLAVQSDGSVWAWGDN 629

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     K  + P +V  LS  ++ + A GG   LA+   G+ +AWG N+ GQ G+ 
Sbjct: 630 SSGQLGDGTLKERSTPVKVKGLS--QVTKIAAGGDTSLAITADGKVWAWGNNQDGQLGDG 687

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                 T       +++P        V  V+ G TH + L  +G VW W      GD  Q
Sbjct: 688 TTNNQST------PVLVPGLSD----VTTVSVGWTHCLALKSDGGVWAW------GDNSQ 731

Query: 170 -----------ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-T 217
                       +VP +V+GL  V  I+ G   +LA+   G   AWG N++ QLG G   
Sbjct: 732 SILGTGSADAYCAVPTQVKGLSGVTAISAGNQFSLAMTNQGVAEAWGRNDFNQLGDGSAA 791

Query: 218 QPRSQPIPVQGLSGLTLVD--IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           +  S P+ ++ +  + +VD  I+AGG+H  AL        WG    G+LG G  +  S  
Sbjct: 792 KFESTPVQIKNMPLVPVVDQSISAGGYH--ALCGTLGTRSWGYNASGQLGLGITEHIS-- 847

Query: 276 VPQKVN 281
           +P+ ++
Sbjct: 848 IPEAIS 853



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 37/288 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           +WGS + G+LG G+   R     V +L    + ++  G    LA+ +DG           
Sbjct: 121 SWGSNQYGELGDGSTTNRNSPAPVPSLS--GISAIATGYSYCLALKNDGTVWAWGSNQNG 178

Query: 59  ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                 T     P Q++ LS   +V  A       A+   G  +AWG N+ GQ G+    
Sbjct: 179 ALGDGTTDDRKTPVQISGLSG--VVSIAANYHSSYAIKSDGTVWAWGLNDQGQLGDG--- 233

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
                  L +D  +P       I + +  GG    V+ ++G +W  G          +  
Sbjct: 234 -------LSKDQWLPINTGLSNI-KSLIPGGFSLTVIKQDGSLWQLGLSVNGSVSNDVEY 285

Query: 173 P-VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
             V+V GL  V   A G  + +A+ +D  +W WGN   G        P  QP+ VQGLSG
Sbjct: 286 TLVQVPGLSHVVSAAAGQNNFMAILQDQTVWTWGNALPGYGSMNTVTP--QPVQVQGLSG 343

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            T   +A  GW+  AL  DG V+ WG   +G L  GD  K +  VP +
Sbjct: 344 -TYSAVACLGWYDLALKTDGTVWAWGNNMNGEL--GDGTKDNHFVPSQ 388



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 133/284 (46%), Gaps = 32/284 (11%)

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
           +D  + +  +P Q   L  T ++  + GG   LA+ + G  ++WG N+YG+ G+      
Sbjct: 81  NDADSNSALVPVQAKNL--TDVIAISAGGDVALALKNDGTVWSWGSNQYGELGD------ 132

Query: 115 DTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
             G    R+   P    P L  +  +A G ++ + L  +G VW WG         G    
Sbjct: 133 --GSTTNRNSPAP---VPSLSGISAIATGYSYCLALKNDGTVWAWGSNQNGALGDGTTDD 187

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
              PV++ GL  V  IA     + A++ DG +WAWG N+ GQLG G ++ +  PI   GL
Sbjct: 188 RKTPVQISGLSGVVSIAANYHSSYAIKSDGTVWAWGLNDQGQLGDGLSKDQWLPINT-GL 246

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           S +    +  GG+  T +  DG ++  G   +G +    ND    +V Q   L     +V
Sbjct: 247 SNIK--SLIPGGFSLTVIKQDGSLWQLGLSVNGSV---SNDVEYTLV-QVPGL---SHVV 297

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT-TGQPMEV 332
             + G  + +A+ +D  ++++G   +   GYG   T T QP++V
Sbjct: 298 SAAAGQNNFMAILQDQTVWTWG---NALPGYGSMNTVTPQPVQV 338



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP-QKVNLLAGEDI 288
           SG  +  I+A   ++ A+  DG V+GWG G    LG  D D +S +VP Q  NL    D+
Sbjct: 47  SGAKITAISANEAYALAMKSDGTVWGWGTGP---LGNNDADSNSALVPVQAKNL---TDV 100

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           + +S GG  ++AL  DG ++S+G   +G LG G       P  VP
Sbjct: 101 IAISAGGDVALALKNDGTVWSWGSNQYGELGDGSTTNRNSPAPVP 145


>gi|444912858|ref|ZP_21233017.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444716551|gb|ELW57397.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 394

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 162/347 (46%), Gaps = 43/347 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI----------CD 55
           S+ AWG    GQLG G    R     +  L    +  V AG  +SLA+           D
Sbjct: 76  SVWAWGENTTGQLGDGTTTLRSTPTKIATLS--NMERVAAGHGHSLALRAGKVWAWGKPD 133

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
            G  KT   P +V  LS+  +V  A G  H LA+   G+ ++WG +  G     P + + 
Sbjct: 134 SGAIKTA--PVEVPGLSD--VVAIAAGFSHSLALSQSGQVWSWGNDNAGHANNTPVQVEG 189

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---WPPGDIKQISV 172
                     +P        ++ +AAG ++S+ L  +G VW WG         D    + 
Sbjct: 190 ----------LPG-------IKAIAAGVSYSLALGTDGSVWAWGDNTLGQLGSDTPSSAT 232

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSG 231
           PV+V  L  +  IA G+ H LAL   G +W WG N++GQLG G T   RSQP  V GL+ 
Sbjct: 233 PVKVAELPMITFIAAGSTHALALDTAGGVWTWGANDHGQLGDGTTSTKRSQPQQVSGLAN 292

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +    +A G  HS AL    +V  WGR   G+LG   +D S K   + V   +  +   +
Sbjct: 293 IQA--LAGGNGHSLALNSANDVMAWGRDSAGQLG---DDLSLKDQSRPVKTSSLTNATAI 347

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ-PMEVPINIP 337
           S G +HS+A+  DG +F++G  ++GRLG    + +   P  +P+  P
Sbjct: 348 SAGHSHSLAVLSDGSLFAWGSNENGRLGVILPLPSETIPTPLPVAFP 394



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 162/326 (49%), Gaps = 42/326 (12%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           SV A   N+     DG T   + P+++  LSN + V A  G  H LA+   G+ +AWG  
Sbjct: 76  SVWAWGENTTGQLGDGTTTLRSTPTKIATLSNMERVAAGHG--HSLALR-AGKVWAWG-- 130

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
                      K D+G I    + +P        V  +AAG +HS+ L++ G VW+WG  
Sbjct: 131 -----------KPDSGAIKTAPVEVPGLSD----VVAIAAGFSHSLALSQSGQVWSWGND 175

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                    + PV+V+GL  +K IA G  ++LAL  DG++WAWG+N  GQLG+ DT   +
Sbjct: 176 ---NAGHANNTPVQVEGLPGIKAIAAGVSYSLALGTDGSVWAWGDNTLGQLGS-DTPSSA 231

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ V  L  +T   IAAG  H+ AL   G V+ WG  +HG+LG G    + +  PQ+V+
Sbjct: 232 TPVKVAELPMITF--IAAGSTHALALDTAGGVWTWGANDHGQLGDG-TTSTKRSQPQQVS 288

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            LA  +I  ++ G  HS+AL     + ++GR   G+LG    +   +    P+   +  N
Sbjct: 289 GLA--NIQALAGGNGHSLALNSANDVMAWGRDSAGQLGDDLSL---KDQSRPVKTSSLTN 343

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVE 367
                     A  ++ G  H+LA++ 
Sbjct: 344 ----------ATAISAGHSHSLAVLS 359



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/258 (37%), Positives = 129/258 (50%), Gaps = 29/258 (11%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           I   +  G H LA    G  +AWG N  GQ G       D    LR     P + A    
Sbjct: 58  ITHVSSRGQHSLARRSDGSVWAWGENTTGQLG-------DGTTTLRS---TPTKIATLSN 107

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           + +VAAG  HS+ L R G VW WG+P   G IK  + PV V GL  V  IA G  H+LAL
Sbjct: 108 MERVAAGHGHSLAL-RAGKVWAWGKP-DSGAIK--TAPVEVPGLSDVVAIAAGFSHSLAL 163

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
            + G +W+WGN+  G          + P+ V+GL G+    IAAG  +S AL  DG V+ 
Sbjct: 164 SQSGQVWSWGNDNAGHA-------NNTPVQVEGLPGIKA--IAAGVSYSLALGTDGSVWA 214

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+LG   +D  S   P KV  L    I  ++ G TH++AL   G ++++G  DH
Sbjct: 215 WGDNTLGQLG---SDTPSSATPVKVAEL--PMITFIAAGSTHALALDTAGGVWTWGANDH 269

Query: 316 GRLGYGRKVTT-GQPMEV 332
           G+LG G   T   QP +V
Sbjct: 270 GQLGDGTTSTKRSQPQQV 287


>gi|403263469|ref|XP_003924054.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 988

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 147/306 (48%), Gaps = 40/306 (13%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE--PERKDDTGRILRRDIVIPQRCAP 132
           +++QAA G  H L +      ++ G N  GQ G    P          R D+  P +   
Sbjct: 24  ELLQAASGERHALLLLTNSLVHSCGENSRGQLGRRGAP----------RWDLPEPVQALK 73

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV 187
            L    V+ G  HS+ +  +G V+ WG         G++K+I+  P ++  L  +K+I V
Sbjct: 74  TLKFDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGVGELKEINFTPRKITTLNGIKIIQV 133

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWH 243
             G +H+LAL +D  +++WG N +GQLG G   P SQP P  V+ L G+ L  +AAGG H
Sbjct: 134 SCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFP-SQPSPQRVRSLEGIPLAQVAAGGAH 192

Query: 244 STALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           S AL+  G  +GWG    G+L   G N +     P  +  L    ++ +SCG  H+  L+
Sbjct: 193 SFALSLCGTSFGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLS 252

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGR 360
           +DG +F+FG    G+LGY                P P   G  +  R   +   + CGG 
Sbjct: 253 QDGKVFTFGDNSSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGGD 297

Query: 361 HTLAIV 366
           HT+A V
Sbjct: 298 HTIAYV 303



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 48/290 (16%)

Query: 4   TTSII-AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           T S++ + G    GQLG       +    V+AL+  K   V  G  +SLA+C  G+    
Sbjct: 40  TNSLVHSCGENSRGQLGRRGAPRWDLPEPVQALKTLKFDLVSCGKEHSLAVCHKGRVFAW 99

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         +    P ++  L+  KI+Q + G +H LA+    + ++WG N +GQ
Sbjct: 100 GAGSEGQLGVGELKEINFTPRKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQ 159

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            G   E               PQR      + + QVAAGG HS  L+  G  + WG    
Sbjct: 160 LGLGKEFPSQPS---------PQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS--- 207

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEYG 210
                Q+++  R   ++  K +++GA  NL              L +DG ++ +G+N  G
Sbjct: 208 -NSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLSQDGKVFTFGDNSSG 266

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRG 259
           QLG   T  +  P  V+ + GL +  I  GG H+ A     G+V  +GRG
Sbjct: 267 QLGYSPTPEKRGPQLVERIDGL-VSQIDCGGDHTIAYVHTTGQVVSFGRG 315



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 54/233 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQPSPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  K-------------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                                 N P  + AL N  ++  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLSQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTR-EG 153
           N  GQ G  P                P++  P+L+      V Q+  GG H++      G
Sbjct: 263 NSSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGGDHTIAYVHTTG 307

Query: 154 HVWTWG-------QPWPPGDIKQ---ISVPVRVQGL--EQVKLIAVGAFHNLA 194
            V ++G       +P  P  +K+   I   +    L   QVK I  G + N  
Sbjct: 308 QVVSFGRGPSATSKPTHPEALKENFDIRCLISADDLVDVQVKHIFAGKYANFV 360


>gi|327273047|ref|XP_003221294.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Anolis
           carolinensis]
          Length = 1081

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 157/352 (44%), Gaps = 57/352 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----------VRSVVAGSRNSLAICDD 56
           +  WG G  GQLG+G  E       V    P++          V  V  G R++L + DD
Sbjct: 2   LYCWGEGSAGQLGLGKGEG------VSGPVPFRPGPRAPADQAVVLVACGERHTLLLRDD 55

Query: 57  --------------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAY 96
                               G+ K    P  + AL   K+V  + G  H LAV ++GR Y
Sbjct: 56  GGVASCGDNSRGQLGRRLPSGQEKRSYGPELIQALETQKVVHVSCGKEHSLAVCNKGRVY 115

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           +WG   +GQ G        TG +  R I        K  V QVA G  HS+ LT +G ++
Sbjct: 116 SWGAGTFGQLG--------TGELGDRLIPKTINALSKYKVIQVACGHDHSIALTNDGRIF 167

Query: 157 TWGQPWP-----PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEY 209
           +WGQ          DI   + P +V  L+ + L  +A G  H+ AL   G ++ WG N  
Sbjct: 168 SWGQNIHGQLGLGKDISSQASPQQVSALDGIPLAQVAAGGAHSFALSLSGVVYGWGRNNA 227

Query: 210 GQLGTGDTQPRSQ---PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
            QLG    +P+ Q   P  +  L  L +  ++ G  H+  LT +G VY +G    G+LG 
Sbjct: 228 HQLGLSQAKPKEQIFKPYSIAALRSLDVAFVSCGAEHTAVLTQNGSVYTFGDDSAGQLG- 286

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS-VALTRDGHIFSFGRGDHGR 317
            ++  S K  PQKV  + G  +  ++CG  H+ V ++  G + SFGRG   R
Sbjct: 287 RNSSSSPKFGPQKVEWIDGP-VSLLACGSYHTLVRISTSGQLLSFGRGPLQR 337



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 24/256 (9%)

Query: 126 IPQRCAPKLIVRQ----VAAGGTHSVVLTREGHVWT--------WGQPWPPGDIKQISVP 173
           +P R  P+    Q    VA G  H+++L  +G V +         G+  P G  K+   P
Sbjct: 25  VPFRPGPRAPADQAVVLVACGERHTLLLRDDGGVASCGDNSRGQLGRRLPSGQEKRSYGP 84

Query: 174 VRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
             +Q LE  K++ V  G  H+LA+   G +++WG   +GQLGTG+   R  P  +  LS 
Sbjct: 85  ELIQALETQKVVHVSCGKEHSLAVCNKGRVYSWGAGTFGQLGTGELGDRLIPKTINALSK 144

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             ++ +A G  HS ALT+DG ++ WG+  HG+LG G  D SS+  PQ+V+ L G  + QV
Sbjct: 145 YKVIQVACGHDHSIALTNDGRIFSWGQNIHGQLGLG-KDISSQASPQQVSALDGIPLAQV 203

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + GG HS AL+  G ++ +GR +  +LG  +     Q  + P +I A R+          
Sbjct: 204 AAGGAHSFALSLSGVVYGWGRNNAHQLGLSQAKPKEQIFK-PYSIAALRSLD-------- 254

Query: 352 AKLVACGGRHTLAIVE 367
              V+CG  HT  + +
Sbjct: 255 VAFVSCGAEHTAVLTQ 270



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 18/171 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPV----QGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           L+ WG    GQLG G  +  S P+P     +  +   +V +A G  H+  L DDG V   
Sbjct: 2   LYCWGEGSAGQLGLGKGEGVSGPVPFRPGPRAPADQAVVLVACGERHTLLLRDDGGVASC 61

Query: 257 GRGEHGRLG--FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
           G    G+LG       +     P+ +  L  + +V VSCG  HS+A+   G ++S+G G 
Sbjct: 62  GDNSRGQLGRRLPSGQEKRSYGPELIQALETQKVVHVSCGKEHSLAVCNKGRVYSWGAGT 121

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+LG G     G  +     IP   NA      ++    VACG  H++A+
Sbjct: 122 FGQLGTGE---LGDRL-----IPKTINALS----KYKVIQVACGHDHSIAL 160


>gi|403263467|ref|XP_003924053.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 1024

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 147/306 (48%), Gaps = 40/306 (13%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE--PERKDDTGRILRRDIVIPQRCAP 132
           +++QAA G  H L +      ++ G N  GQ G    P          R D+  P +   
Sbjct: 24  ELLQAASGERHALLLLTNSLVHSCGENSRGQLGRRGAP----------RWDLPEPVQALK 73

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV 187
            L    V+ G  HS+ +  +G V+ WG         G++K+I+  P ++  L  +K+I V
Sbjct: 74  TLKFDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGVGELKEINFTPRKITTLNGIKIIQV 133

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWH 243
             G +H+LAL +D  +++WG N +GQLG G   P SQP P  V+ L G+ L  +AAGG H
Sbjct: 134 SCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFP-SQPSPQRVRSLEGIPLAQVAAGGAH 192

Query: 244 STALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           S AL+  G  +GWG    G+L   G N +     P  +  L    ++ +SCG  H+  L+
Sbjct: 193 SFALSLCGTSFGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLS 252

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGR 360
           +DG +F+FG    G+LGY                P P   G  +  R   +   + CGG 
Sbjct: 253 QDGKVFTFGDNSSGQLGYS---------------PTPEKRGPQLVERIDGLVSQIDCGGD 297

Query: 361 HTLAIV 366
           HT+A V
Sbjct: 298 HTIAYV 303



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 125/290 (43%), Gaps = 48/290 (16%)

Query: 4   TTSII-AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           T S++ + G    GQLG       +    V+AL+  K   V  G  +SLA+C  G+    
Sbjct: 40  TNSLVHSCGENSRGQLGRRGAPRWDLPEPVQALKTLKFDLVSCGKEHSLAVCHKGRVFAW 99

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         +    P ++  L+  KI+Q + G +H LA+    + ++WG N +GQ
Sbjct: 100 GAGSEGQLGVGELKEINFTPRKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQ 159

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            G   E               PQR      + + QVAAGG HS  L+  G  + WG    
Sbjct: 160 LGLGKEFPSQPS---------PQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGS--- 207

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNEYG 210
                Q+++  R   ++  K +++GA  NL              L +DG ++ +G+N  G
Sbjct: 208 -NSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLSQDGKVFTFGDNSSG 266

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRG 259
           QLG   T  +  P  V+ + GL +  I  GG H+ A     G+V  +GRG
Sbjct: 267 QLGYSPTPEKRGPQLVERIDGL-VSQIDCGGDHTIAYVHTTGQVVSFGRG 315



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 54/233 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           ++  + + +WG    GQLG+G     +     V++LE   +  V AG  +S A+   G +
Sbjct: 143 LSKDSQVFSWGKNSHGQLGLGKEFPSQPSPQRVRSLEGIPLAQVAAGGAHSFALSLCGTS 202

Query: 60  K-------------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                                 N P  + AL N  ++  + G  H   +   G+ + +G 
Sbjct: 203 FGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLSQDGKVFTFGD 262

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTR-EG 153
           N  GQ G  P                P++  P+L+      V Q+  GG H++      G
Sbjct: 263 NSSGQLGYSP---------------TPEKRGPQLVERIDGLVSQIDCGGDHTIAYVHTTG 307

Query: 154 HVWTWG-------QPWPPGDIKQ---ISVPVRVQGL--EQVKLIAVGAFHNLA 194
            V ++G       +P  P  +K+   I   +    L   QVK I  G + N  
Sbjct: 308 QVVSFGRGPSATSKPTHPEALKENFDIRCLISADDLVDVQVKHIFAGKYANFV 360


>gi|195622006|gb|ACG32833.1| HECT domain and RCC1-like domain-containing protein 2 [Zea mays]
          Length = 353

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 158/343 (46%), Gaps = 57/343 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WG GEDGQLG G+ E+R    V+   +   + SV+ G+ ++ A  +D          
Sbjct: 34  LCSWGRGEDGQLGHGDAEDRLVPTVLSGFDAPAITSVICGADHTTAYSED---------- 83

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                    + + Y+WG  ++G+ G               D+  
Sbjct: 84  -------------------------ELQVYSWGWGDFGRLGHGNSS----------DVFT 108

Query: 127 PQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
           PQ  +    L ++Q+A G +H + +T  G V +WG+        G  +   +P ++Q  E
Sbjct: 109 PQPVKALQGLKIKQIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAFE 168

Query: 181 QV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
            V  K+IA GA H  A+ EDG L+ WG   YG LG GD   R  P  V  + G  +V +A
Sbjct: 169 SVCVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLLPEKVSSVEGEKMVLVA 228

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            G  H+  ++D G +Y +G  ++G+LG GD +    +VP KV  L    I Q+S G  H+
Sbjct: 229 CGWRHTITVSDSGNLYTYGWSKYGQLGHGDFED--HLVPHKVEALKDSTISQISGGWRHT 286

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           +ALT +G ++ +G    G++G G       P +V  + P   N
Sbjct: 287 MALTSEGKLYGWGWNKFGQVGVGNNDDHSSPGQV--SFPGSEN 327



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 33/300 (11%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G  H +A+       +WG  E GQ G      D   R++    V+    AP   
Sbjct: 15  VVLVSAGASHSVALLTGNVLCSWGRGEDGQLG----HGDAEDRLV--PTVLSGFDAPA-- 66

Query: 136 VRQVAAGGTHSVVLTR-EGHVWTWGQPWPP------GDIKQISVPVRVQGLE--QVKLIA 186
           +  V  G  H+   +  E  V++WG  W        G+   +  P  V+ L+  ++K IA
Sbjct: 67  ITSVICGADHTTAYSEDELQVYSWG--WGDFGRLGHGNSSDVFTPQPVKALQGLKIKQIA 124

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H LA+   G + +WG N+ GQLG G T+    P  +Q    + +  IAAG  H+ A
Sbjct: 125 CGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDSLLPQKIQAFESVCVKMIAAGAEHTAA 184

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T+DG++YGWG G +G LG G  D++ +++P+KV+ + GE +V V+CG  H++ ++  G+
Sbjct: 185 VTEDGDLYGWGWGRYGNLGLG--DRNDRLLPEKVSSVEGEKMVLVACGWRHTITVSDSGN 242

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++++G   +G+LG+G      +   VP  + A +++            ++ G RHT+A+ 
Sbjct: 243 LYTYGWSKYGQLGHGDF----EDHLVPHKVEALKDS--------TISQISGGWRHTMALT 290



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 21/252 (8%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           D V+    +P   V  V+AG +HSV L     + +WG+        GD +   VP  + G
Sbjct: 2   DSVMAAPDSPPQTVVLVSAGASHSVALLTGNVLCSWGRGEDGQLGHGDAEDRLVPTVLSG 61

Query: 179 LEQVKLIAV--GAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            +   + +V  GA H  A  ED   +++WG  ++G+LG G++     P PV+ L GL + 
Sbjct: 62  FDAPAITSVICGADHTTAYSEDELQVYSWGWGDFGRLGHGNSSDVFTPQPVKALQGLKIK 121

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IA G  H  A+T  GEV  WGR ++G+LG G  + S  ++PQK+       +  ++ G 
Sbjct: 122 QIACGDSHCLAVTMAGEVQSWGRNQNGQLGLGTTEDS--LLPQKIQAFESVCVKMIAAGA 179

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+ A+T DG ++ +G G +G LG G +     P +V  ++   +             LV
Sbjct: 180 EHTAAVTEDGDLYGWGWGRYGNLGLGDRNDRLLPEKVS-SVEGEKMV-----------LV 227

Query: 356 ACGGRHTLAIVE 367
           ACG RHT+ + +
Sbjct: 228 ACGWRHTITVSD 239


>gi|410940026|ref|ZP_11371847.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           noguchii str. 2006001870]
 gi|410784889|gb|EKR73859.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           noguchii str. 2006001870]
          Length = 505

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 156/350 (44%), Gaps = 49/350 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ +  +  WG+   GQLGIGNN         KA +P        G+R            
Sbjct: 192 ISKSGRVYTWGANSKGQLGIGNNNTDP----AKASDP--------GNRQP---------- 229

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+++N + N   V  A G  H L +   G   A+G N  GQ G      D      
Sbjct: 230 ----PTEINGIDNA--VMGAYGFNHALVLKSDGTVVAFGQNNVGQLGNGANNLD------ 277

Query: 121 RRDIV-IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---------PPGDIKQI 170
           R     IP   A    V Q+ AG  HS  LT  G V+ WG+            P +  Q 
Sbjct: 278 RNSFSSIPVNVAQLRNVIQIIAGSEHSAALTENGDVYVWGRNQYGNLGNGITSPANTIQ- 336

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGL 229
           S P++V+GL ++K IA G  H LAL  DG +++WG N  GQLG G +  P   PIP Q L
Sbjct: 337 STPLKVEGLSKIKQIANGRDHILALTSDGKIYSWGLNASGQLGIGGNGNPLPTPIPTQVL 396

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           +      I AGG  S A+  +GEV GWG  G    L  G+++      P K  ++  +++
Sbjct: 397 NIQDAESIWAGGTQSFAILKNGEVKGWGANGNMASLALGESNTPKVYEPNKA-VVGIDNV 455

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIP 337
           V   CG TH+ AL  +G I+ +G    G LG        G P  V IN+P
Sbjct: 456 VHFGCGATHNFALLGNGEIYGWGWNFKGSLGRNDLQNNWGAPNPVLINLP 505



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 33/263 (12%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
            G+ Y  G N +GQ G      D+   RI++ D++          +  +     +S+ ++
Sbjct: 142 NGKLYTVGRNNFGQLGTGISTGDNINDRIVKVDLIQD--------IFSIHFNQNNSMAIS 193

Query: 151 REGHVWTWG--------------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           + G V+TWG               P    D      P  + G++   + A G  H L L+
Sbjct: 194 KSGRVYTWGANSKGQLGIGNNNTDPAKASDPGNRQPPTEINGIDNAVMGAYGFNHALVLK 253

Query: 197 EDGALWAWGNNEYGQLGTGDT---QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            DG + A+G N  GQLG G     +     IPV       ++ I AG  HS ALT++G+V
Sbjct: 254 SDGTVVAFGQNNVGQLGNGANNLDRNSFSSIPVNVAQLRNVIQIIAGSEHSAALTENGDV 313

Query: 254 YGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           Y WGR ++G LG G    ++ +   P KV  L+   I Q++ G  H +ALT DG I+S+G
Sbjct: 314 YVWGRNQYGNLGNGITSPANTIQSTPLKVEGLS--KIKQIANGRDHILALTSDGKIYSWG 371

Query: 312 RGDHGRLGYGRKVTTGQPMEVPI 334
               G+LG G     G P+  PI
Sbjct: 372 LNASGQLGIGGN---GNPLPTPI 391



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 44/276 (15%)

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--------WPP 164
           K   G IL ++I             +++AGG HS  L   G ++T G+            
Sbjct: 111 KKSNGFILSQEIHF-------YFGTKLSAGGGHSGFLIN-GKLYTVGRNNFGQLGTGIST 162

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP--- 219
           GD     + V+V  ++ +  I     +++A+ + G ++ WG N  GQLG G+  T P   
Sbjct: 163 GDNINDRI-VKVDLIQDIFSIHFNQNNSMAISKSGRVYTWGANSKGQLGIGNNNTDPAKA 221

Query: 220 -----RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---K 271
                R  P  + G+    +   A G  H+  L  DG V  +G+   G+LG G N+    
Sbjct: 222 SDPGNRQPPTEINGIDNAVMG--AYGFNHALVLKSDGTVVAFGQNNVGQLGNGANNLDRN 279

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           S   +P  VN+    +++Q+  G  HS ALT +G ++ +GR  +G LG G          
Sbjct: 280 SFSSIP--VNVAQLRNVIQIIAGSEHSAALTENGDVYVWGRNQYGNLGNGITSPANTIQS 337

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            P+ +       +G+ +    K +A G  H LA+  
Sbjct: 338 TPLKV-------EGLSK---IKQIANGRDHILALTS 363


>gi|374296377|ref|YP_005046568.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium clariflavum DSM 19732]
 gi|359825871|gb|AEV68644.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Clostridium clariflavum DSM 19732]
          Length = 819

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 163/348 (46%), Gaps = 34/348 (9%)

Query: 9   AWGSGEDGQL----GIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDD------- 56
           AWG+ +  QL    G+         C+  A++  K V+ +VA    +L + +D       
Sbjct: 483 AWGNNDYLQLIDDVGLSAESGSNDYCIPFAVKSEKDVKDIVAAFNRTLVVYEDEEVWIYA 542

Query: 57  ------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                 G  ++  +P ++  L    +   ++G  H LA+ D G  Y+ G + +GQ G+  
Sbjct: 543 AKNTVAGDEQSVYLPYKIEGLEG--VTDVSVGKNHILALKDDGYVYSAGNSYWGQLGDGS 600

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
           +   ++      +     +      +  VAAG  HSV L  +G VWTWG         G+
Sbjct: 601 QTHHNS----YSETFNLTKAKGLTNIVAVAAGSEHSVALKNDGTVWTWGSNQFGELAHGN 656

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
                 P++ +GLE +  I+ G  +NLAL+EDG +WAWG+N YGQLG G T   + P+ V
Sbjct: 657 DTFSLEPMQAEGLENICAISAGNNYNLALKEDGTVWAWGDNTYGQLGNGSTYKTNVPVQV 716

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL    +V I AG   S A+T DG+V+ WG+   G+L  GD    +++ P K++   G 
Sbjct: 717 DGLE--NIVKIIAGRDSSFAITKDGDVWAWGKNNCGQL--GDGTTQNRLTPVKIDAFKG- 771

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
               +  G   ++ L  DG +   G    G +  G    +  P+EV I
Sbjct: 772 -CKSIVSGMDFTMVLMNDGTVIGVGSNVSGVMTLGFSDRSFIPIEVKI 818



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 124/215 (57%), Gaps = 20/215 (9%)

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-------PPGDIKQISVPVRVQG 178
            P++     +  QVA G  H++ L ++G VWTWG            G+I++I  P +++G
Sbjct: 103 FPKKSMEGFV--QVACGEYHTIALKKDGTVWTWGYNSYGQLGLGEAGEIERI--PKKIEG 158

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           LE V  +A G+ H+LAL++DG +WAWG N YGQLG      R+ P+ V+GL+G+   DI 
Sbjct: 159 LEDVIKVAAGSRHSLALKKDGTVWAWGYNYYGQLGDESNIRRNTPVQVKGLTGVK--DID 216

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG + S AL DDG V+GWG    G++G G    S+  VP +   +   +I Q+S G  H 
Sbjct: 217 AGDFFSVALRDDGTVWGWGYNYKGQIGCGTGINSN--VPLQT--VGVSNITQISAGDEHV 272

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +AL +D +++ +G GD G+LG G   T    + +P
Sbjct: 273 LALDKDKNVWGWGAGDKGQLGNG---TAASFLRIP 304



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 133/255 (52%), Gaps = 18/255 (7%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
            VQ A G +H +A+   G  + WG N YGQ G       + G I R    IP++      
Sbjct: 111 FVQVACGEYHTIALKKDGTVWTWGYNSYGQLG-----LGEAGEIER----IPKKIEGLED 161

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQI--SVPVRVQGLEQVKLIAVGAFH 191
           V +VAAG  HS+ L ++G VW WG  +    GD   I  + PV+V+GL  VK I  G F 
Sbjct: 162 VIKVAAGSRHSLALKKDGTVWAWGYNYYGQLGDESNIRRNTPVQVKGLTGVKDIDAGDFF 221

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           ++AL++DG +W WG N  GQ+G G     + P+   G+S +T   I+AG  H  AL  D 
Sbjct: 222 SVALRDDGTVWGWGYNYKGQIGCGTGINSNVPLQTVGVSNIT--QISAGDEHVLALDKDK 279

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            V+GWG G+ G+LG G    S   +P+K++     ++  V  G   S A+  DG ++ +G
Sbjct: 280 NVWGWGAGDKGQLGNG-TAASFLRIPEKLSSFT--EVKSVKAGTMVSAAIKEDGTLWIWG 336

Query: 312 RGDHGRLGYGRKVTT 326
              +G +G  R + +
Sbjct: 337 DNTYGIMGNSRNINS 351



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 186/392 (47%), Gaps = 67/392 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           ++  WG    GQLG+G   E E +   ++ LE   V  V AGSR+SLA+  DG       
Sbjct: 129 TVWTWGYNSYGQLGLGEAGEIERIPKKIEGLED--VIKVAAGSRHSLALKKDGTVWAWGY 186

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N P QV  L+  K + A  G +  +A+ D G  + WG N  GQ G 
Sbjct: 187 NYYGQLGDESNIRRNTPVQVKGLTGVKDIDA--GDFFSVALRDDGTVWGWGYNYKGQIG- 243

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
                   G  +  ++  P +      + Q++AG  H + L ++ +VW WG     GD  
Sbjct: 244 -------CGTGINSNV--PLQTVGVSNITQISAGDEHVLALDKDKNVWGWG----AGDKG 290

Query: 169 QIS---------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           Q+          +P ++    +VK +  G   + A++EDG LW WG+N YG +G      
Sbjct: 291 QLGNGTAASFLRIPEKLSSFTEVKSVKAGTMVSAAIKEDGTLWIWGDNTYGIMGN-SRNI 349

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S P+  + +SG+  V++    + + AL +DG V+ WG+  +G LG G     + +  Q 
Sbjct: 350 NSSPVQRKDISGIKAVELNQ--YCAAALKNDGTVWTWGKNINGILGLG-----TALDSQI 402

Query: 280 VNLLAGE-DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            ++++G  D+  +SCG TH   +  DG ++++G   +G+LG G      +P+ +      
Sbjct: 403 PSVVSGTGDVEVISCGKTHMAIIKSDGTLWTWGYNIYGQLGNGNVDYITEPVTI------ 456

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
                +G+    I+K ++CGG+H LAI E +T
Sbjct: 457 -----NGISN--ISK-ISCGGKHVLAIDENKT 480



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 149/332 (44%), Gaps = 38/332 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG    GQLG  +N  R     VK L    V+ + AG   S+A+ DDG        
Sbjct: 180 TVWAWGYNYYGQLGDESNIRRNTPVQVKGLTG--VKDIDAGDFFSVALRDDGTVWGWGYN 237

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                        N+P Q   +SN  I Q + G  H LA+D     + WG  + GQ G  
Sbjct: 238 YKGQIGCGTGINSNVPLQTVGVSN--ITQISAGDEHVLALDKDKNVWGWGAGDKGQLGNG 295

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDI 167
                     LR    IP++ +    V+ V AG   S  +  +G +W WG       G+ 
Sbjct: 296 T-----AASFLR----IPEKLSSFTEVKSVKAGTMVSAAIKEDGTLWIWGDNTYGIMGNS 346

Query: 168 KQI-SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           + I S PV+ + +  +K + +  +   AL+ DG +W WG N  G LG G       P  V
Sbjct: 347 RNINSSPVQRKDISGIKAVELNQYCAAALKNDGTVWTWGKNINGILGLGTALDSQIPSVV 406

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            G   + +  I+ G  H   +  DG ++ WG   +G+LG G+ D     + + V +    
Sbjct: 407 SGTGDVEV--ISCGKTHMAIIKSDGTLWTWGYNIYGQLGNGNVD----YITEPVTINGIS 460

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +I ++SCGG H +A+  +  ++++G  D+ +L
Sbjct: 461 NISKISCGGKHVLAIDENKTLWAWGNNDYLQL 492



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 8/170 (4%)

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLV 235
           + +E    +A G +H +AL++DG +W WG N YGQLG G+  +    P  ++GL    ++
Sbjct: 106 KSMEGFVQVACGEYHTIALKKDGTVWTWGYNSYGQLGLGEAGEIERIPKKIEGLE--DVI 163

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            +AAG  HS AL  DG V+ WG   +G+L  GD     +  P +V  L G  +  +  G 
Sbjct: 164 KVAAGSRHSLALKKDGTVWAWGYNYYGQL--GDESNIRRNTPVQVKGLTG--VKDIDAGD 219

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME-VPINIPAPRNAGD 344
             SVAL  DG ++ +G    G++G G  + +  P++ V ++     +AGD
Sbjct: 220 FFSVALRDDGTVWGWGYNYKGQIGCGTGINSNVPLQTVGVSNITQISAGD 269



 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 26/164 (15%)

Query: 6   SIIAWGSGEDGQLGIGNN---------EEREWVCVVKALEPYKVR-----SVVAGSRNSL 51
           ++  WGS + G+L  GN+         E  E +C + A   Y +      +V A   N+ 
Sbjct: 640 TVWTWGSNQFGELAHGNDTFSLEPMQAEGLENICAISAGNNYNLALKEDGTVWAWGDNTY 699

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               +G T   N+P QV+ L N  IV+   G     A+   G  +AWG N  GQ G+   
Sbjct: 700 GQLGNGSTYKTNVPVQVDGLEN--IVKIIAGRDSSFAITKDGDVWAWGKNNCGQLGDGTT 757

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           +     R+    I   + C      + + +G   ++VL  +G V
Sbjct: 758 QN----RLTPVKIDAFKGC------KSIVSGMDFTMVLMNDGTV 791


>gi|325180310|emb|CCA14713.1| regulator of chromosome condensation (RCC1)like protein putative
           [Albugo laibachii Nc14]
          Length = 393

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 62/375 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNE--------EREWVCVVKALEPYKVRSVVAGSRNSLA 52
           M++ +++  WG+G  GQLG G+ E        E     +++  E   +  +  G+ +S A
Sbjct: 1   MSTQSTVFTWGTGTQGQLGHGSFEKTGIRSSYEELSPRILETFEGKNIAKLDFGATHSAA 60

Query: 53  ICDDGKTKT------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR 94
           I  +GK  T                  ++IP  V+AL   KIV  + G +H  AVD++G+
Sbjct: 61  IDKEGKLYTWGSNEYHQLGHGSSNQDIQSIPRVVDALRGIKIVDISCGEYHTGAVDEEGK 120

Query: 95  AYAWG--GNEY---GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
            + WG  G+     G  G      +   R++R    +  +  P   V+ V  G  H+V L
Sbjct: 121 LFTWGWGGSTMKGSGALGHAGGEDESIPRLVR---TLVDQGVP---VKSVECGELHTVAL 174

Query: 150 TREGHVWTWGQPWP------PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
           T++G +W WG            D  ++  PV     E +  I+ G     A+ E G +++
Sbjct: 175 TKDGEIWAWGNGEYGRLGNGASDNFEVPEPVEYFADENIASISAGRDFTFAITEHGEVYS 234

Query: 204 WGNNEYGQLGTGD------TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           WG N + QLG G           + P+ V+ LS + +  ++AG  H+ A+T+DG+++ WG
Sbjct: 235 WGINSHSQLGLGGGLTVDYYNMETIPVVVEALSNVNVAQVSAGYDHAAAVTNDGKMFMWG 294

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
                            + P ++ +L  E I+ V CG  ++ AL+  G++F+FG+G    
Sbjct: 295 -------------AKLWLEPHEMTILKDETIISVQCGRYYTAALSASGNLFTFGKGHSNC 341

Query: 318 LGYGRKVTTGQPMEV 332
           LG+G + T  QP+ V
Sbjct: 342 LGHGERKTQLQPLLV 356



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 13/181 (7%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQP---RSQ-----PIPVQGLSGLTLVDIAAGGWHSTA 246
           +     ++ WG    GQLG G  +    RS      P  ++   G  +  +  G  HS A
Sbjct: 1   MSTQSTVFTWGTGTQGQLGHGSFEKTGIRSSYEELSPRILETFEGKNIAKLDFGATHSAA 60

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +  +G++Y WG  E+ +LG G +++  + +P+ V+ L G  IV +SCG  H+ A+  +G 
Sbjct: 61  IDKEGKLYTWGSNEYHQLGHGSSNQDIQSIPRVVDALRGIKIVDISCGEYHTGAVDEEGK 120

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +F++G G     G G     G   E       PR     VD+    K V CG  HT+A+ 
Sbjct: 121 LFTWGWGGSTMKGSGALGHAGGEDE-----SIPRLVRTLVDQGVPVKSVECGELHTVALT 175

Query: 367 E 367
           +
Sbjct: 176 K 176



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 31/254 (12%)

Query: 16  GQLGIGNNEEREWVCVVKAL--EPYKVRSVVAGSRNSLAICDDGK--------------- 58
           G LG    E+     +V+ L  +   V+SV  G  +++A+  DG+               
Sbjct: 135 GALGHAGGEDESIPRLVRTLVDQGVPVKSVECGELHTVALTKDGEIWAWGNGEYGRLGNG 194

Query: 59  -TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
            +    +P  V   ++  I   + G     A+ + G  Y+WG N + Q G       D  
Sbjct: 195 ASDNFEVPEPVEYFADENIASISAGRDFTFAITEHGEVYSWGINSHSQLGLGGGLTVDYY 254

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPWPPGDIKQISVPVRV 176
            +    +V+       + V QV+AG  H+  +T +G ++ WG + W          P  +
Sbjct: 255 NMETIPVVV--EALSNVNVAQVSAGYDHAAAVTNDGKMFMWGAKLWLE--------PHEM 304

Query: 177 QGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
             L+   +I+V  G ++  AL   G L+ +G      LG G+ + + QP+ V+ L+   +
Sbjct: 305 TILKDETIISVQCGRYYTAALSASGNLFTFGKGHSNCLGHGERKTQLQPLLVESLNRYNV 364

Query: 235 VDIAAGGWHSTALT 248
           V +  G  H  ALT
Sbjct: 365 VSMTCGYSHMGALT 378


>gi|148223431|ref|NP_001085755.1| HECT and RLD domain containing E3 ubiquitin protein ligase family
           member 6 [Xenopus laevis]
 gi|49115314|gb|AAH73297.1| MGC80684 protein [Xenopus laevis]
          Length = 1028

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 149/302 (49%), Gaps = 41/302 (13%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           + +IG  H L +   G   + G N YGQ G    RK +  RI +   +  Q       + 
Sbjct: 38  KVSIGEKHSLYLLKDGTLLSCGQNPYGQLG----RKGNNSRIEQISSLEAQT------IV 87

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRVQGLEQVKLIAV- 187
            V+ G  HSV +  EG++++WG     G   Q+           P R+ GL   K+I + 
Sbjct: 88  DVSCGTNHSVAMCDEGNIYSWGD----GSEGQLGTGKFSSKNFTPKRITGLLNRKIIQIS 143

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHS 244
            G FH++AL EDG +++WG N+ GQLG G +Q  +Q  P  V+ L G+ LV + AGG  +
Sbjct: 144 CGNFHSVALAEDGRVFSWGQNKCGQLGLG-SQIINQATPQLVKSLKGIPLVQVTAGGSQT 202

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL+  G V+ WGR   G+LGF ++ K     P  V+ L    +  +SCG  H+  L +D
Sbjct: 203 FALSMSGTVFAWGRNNAGQLGFKNDAKKGTFKPYAVDSLRDLGVAYISCGEEHTAVLNKD 262

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G +++FG   +G+LG      +G    VP  I            R +++ VACG  HTL 
Sbjct: 263 GIVYTFGDDTYGQLGQ----QSGNQTSVPQKIEEY--------SRQVSQ-VACGRYHTLL 309

Query: 365 IV 366
            V
Sbjct: 310 YV 311



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            Q  E V+ +++G  H+L L +DG L + G N YGQLG      R + I    L   T+V
Sbjct: 30  FQKKESVQKVSIGEKHSLYLLKDGTLLSCGQNPYGQLGRKGNNSRIEQI--SSLEAQTIV 87

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           D++ G  HS A+ D+G +Y WG G  G+LG G    S    P+++  L    I+Q+SCG 
Sbjct: 88  DVSCGTNHSVAMCDEGNIYSWGDGSEGQLGTGKFS-SKNFTPKRITGLLNRKIIQISCGN 146

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKV 324
            HSVAL  DG +FS+G+   G+LG G ++
Sbjct: 147 FHSVALAEDGRVFSWGQNKCGQLGLGSQI 175



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 55/302 (18%)

Query: 6   SIIAWGSGEDGQLG-IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           ++++ G    GQLG  GNN   E +    +LE   +  V  G+ +S+A+CD+G       
Sbjct: 54  TLLSCGQNPYGQLGRKGNNSRIEQI---SSLEAQTIVDVSCGTNHSVAMCDEGNIYSWGD 110

Query: 58  ---------KTKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    K  ++N  P ++  L N KI+Q + G +H +A+ + GR ++WG N+ GQ G
Sbjct: 111 GSEGQLGTGKFSSKNFTPKRITGLLNRKIIQISCGNFHSVALAEDGRVFSWGQNKCGQLG 170

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTW-- 158
              +              I  +  P+L+       + QV AGG+ +  L+  G V+ W  
Sbjct: 171 LGSQ--------------IINQATPQLVKSLKGIPLVQVTAGGSQTFALSMSGTVFAWGR 216

Query: 159 ---GQPWPPGDIKQISV-PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
              GQ     D K+ +  P  V  L    V  I+ G  H   L +DG ++ +G++ YGQL
Sbjct: 217 NNAGQLGFKNDAKKGTFKPYAVDSLRDLGVAYISCGEEHTAVLNKDGIVYTFGDDTYGQL 276

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHGRLGFGDNDK 271
           G       S P  ++  S   +  +A G +H+         +  +G+G   + G   ND+
Sbjct: 277 GQQSGNQTSVPQKIEEYSR-QVSQVACGRYHTLLYVFTCNRIVSFGKGSQRQQG---NDE 332

Query: 272 SS 273
           SS
Sbjct: 333 SS 334



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGL--SGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           ++ WG+N +GQL   + +                ++  ++ G  HS  L  DG +   G+
Sbjct: 1   MYCWGDNCFGQLAVLEEEKEVVHFKENDYFQKKESVQKVSIGEKHSLYLLKDGTLLSCGQ 60

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
             +G+LG   N+  S++  ++++ L  + IV VSCG  HSVA+  +G+I+S+G G  G+L
Sbjct: 61  NPYGQLGRKGNN--SRI--EQISSLEAQTIVDVSCGTNHSVAMCDEGNIYSWGDGSEGQL 116

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G G+  +             P+     ++R+ I   ++CG  H++A+ E
Sbjct: 117 GTGKFSSKNF---------TPKRITGLLNRKIIQ--ISCGNFHSVALAE 154


>gi|440230900|ref|YP_007344693.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Serratia
            marcescens FGI94]
 gi|440052605|gb|AGB82508.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Serratia
            marcescens FGI94]
          Length = 1812

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 168/368 (45%), Gaps = 50/368 (13%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA-----GSRNSLAICD------ 55
            I +WG   DG LG G N +R    V+  L P    +VV+     G+  S AI D      
Sbjct: 1449 IWSWGFNRDGMLGDGTNRDRTR-PVLTDLTPLGGSTVVSISTGSGASRSQAIDDQGRLWA 1507

Query: 56   ----------DGKTKTENIPSQVN--ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                      DG     N P  V+  +L ++K+   A G +H L +DDQ R +AWG N  
Sbjct: 1508 WGYNFAGALGDGTGIDRNRPVLVDLASLGSSKVTAVAAGRYHNLVLDDQSRLWAWGHNGD 1567

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKL------IVRQVAAGGTHSVVLTREGHVWT 157
            GQ G+            R ++  P      L       V  V AG  HS++L   G +W 
Sbjct: 1568 GQLGDG----------TRTNVAYPLPIQVDLEPLAGSTVTGVWAGDFHSIILDDLGRLWV 1617

Query: 158  WGQ----PWPPGDIKQISVPVRVQGL----EQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
            WG+        G     + PV V  L     +V  ++ G  H +AL E G LWAWG N+ 
Sbjct: 1618 WGKNKYGELGDGTTTYQTRPVLVDLLPLNGRKVMAVSAGEHHTVALDEQGGLWAWGLNDS 1677

Query: 210  GQLGTGDTQPRSQPIPVQ--GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
            G+LG G T  R +P+ V    L G  +V I+AGGW++ AL + G ++ WG  E G LG G
Sbjct: 1678 GRLGDGSTTDRHRPVQVDLTSLDGHKVVAISAGGWNTVALDELGRLWAWGPNESGLLGDG 1737

Query: 268  DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
                  + V   +  L G  +V VS G  +   +   G ++++G   +G+LG G K    
Sbjct: 1738 TTINQHRPVQVDLTPLNGRKVVAVSAGSFYFFVVDDRGELWAWGSNSYGQLGDGTKTRRL 1797

Query: 328  QPMEVPIN 335
            +P+ V ++
Sbjct: 1798 KPVRVDMS 1805



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 16/269 (5%)

Query: 78   QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
            + A G  H L +D++ R ++WG N  G  G+   R  D  R +  D+         ++  
Sbjct: 1432 RMAAGSLHSLILDNKDRIWSWGFNRDGMLGDGTNR--DRTRPVLTDLT--PLGGSTVVSI 1487

Query: 138  QVAAGGTHSVVLTREGHVWTWGQPWP--PGD------IKQISVPVRVQGLEQVKLIAVGA 189
               +G + S  +  +G +W WG  +    GD       + + V +   G  +V  +A G 
Sbjct: 1488 STGSGASRSQAIDDQGRLWAWGYNFAGALGDGTGIDRNRPVLVDLASLGSSKVTAVAAGR 1547

Query: 190  FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ----GLSGLTLVDIAAGGWHST 245
            +HNL L +   LWAWG+N  GQLG G     + P+P+Q     L+G T+  + AG +HS 
Sbjct: 1548 YHNLVLDDQSRLWAWGHNGDGQLGDGTRTNVAYPLPIQVDLEPLAGSTVTGVWAGDFHSI 1607

Query: 246  ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
             L D G ++ WG+ ++G LG G     ++ V   +  L G  ++ VS G  H+VAL   G
Sbjct: 1608 ILDDLGRLWVWGKNKYGELGDGTTTYQTRPVLVDLLPLNGRKVMAVSAGEHHTVALDEQG 1667

Query: 306  HIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             ++++G  D GRLG G      +P++V +
Sbjct: 1668 GLWAWGLNDSGRLGDGSTTDRHRPVQVDL 1696



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 24/244 (9%)

Query: 138  QVAAGGTHSVVLTREGHVWTWG--QPWPPGD------IKQISVPVRVQGLEQVKLIAV-- 187
            ++AAG  HS++L  +  +W+WG  +    GD       + +   +   G   V  I+   
Sbjct: 1432 RMAAGSLHSLILDNKDRIWSWGFNRDGMLGDGTNRDRTRPVLTDLTPLGGSTVVSISTGS 1491

Query: 188  GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ--GLSGLTLVDIAAGGWHST 245
            GA  + A+ + G LWAWG N  G LG G    R++P+ V    L    +  +AAG +H+ 
Sbjct: 1492 GASRSQAIDDQGRLWAWGYNFAGALGDGTGIDRNRPVLVDLASLGSSKVTAVAAGRYHNL 1551

Query: 246  ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL--LAGEDIVQVSCGGTHSVALTR 303
             L D   ++ WG    G+LG G     +  +P +V+L  LAG  +  V  G  HS+ L  
Sbjct: 1552 VLDDQSRLWAWGHNGDGQLGDGTRTNVAYPLPIQVDLEPLAGSTVTGVWAGDFHSIILDD 1611

Query: 304  DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
             G ++ +G+  +G LG G      +P+ V +    P N      R+ +A  V+ G  HT+
Sbjct: 1612 LGRLWVWGKNKYGELGDGTTTYQTRPVLVDL---LPLNG-----RKVMA--VSAGEHHTV 1661

Query: 364  AIVE 367
            A+ E
Sbjct: 1662 ALDE 1665


>gi|219847607|ref|YP_002462040.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
           9485]
 gi|219541866|gb|ACL23604.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
           DSM 9485]
          Length = 776

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 169/389 (43%), Gaps = 52/389 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WG  + GQLG G    R     V  L P  V ++ AG  ++ A        
Sbjct: 374 LMSSGGVRCWGHNDRGQLGDGTTTARSTPVAVSGL-PSGVTAIAAGRLHTCARTSSGGVW 432

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P  V+ L++  +   A GGWH  A+   G  + WG N  G
Sbjct: 433 CWGDNSDGQLGDGSFTDSSTPVAVSGLAS-GVETIAAGGWHTCALTGSGGVWCWGRNNSG 491

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G  +     +     P   V  +AAGG H+  LT  G VW WG  +  
Sbjct: 492 QLGD--------GSTIYHITPVAVSGLPSG-VTAIAAGGVHTCALTGSGGVWCWGGNFAG 542

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S PV V GL   V  IA G  H  AL   G +W WG N++GQLG G T  
Sbjct: 543 QLGDGTTTDRSTPVAVSGLPSGVTAIAAGDIHTCALTGSGGVWCWGGNDFGQLGDGTTTN 602

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
           RS P+ V GL SG+T   IAAG  ++ ALT  G V+ WG    G+L   D+  +S+  P 
Sbjct: 603 RSTPVAVSGLPSGVTA--IAAGLRYTCALTGSGGVWCWGYNLSGQL---DDGTTSRSTPV 657

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            V+ L    +  ++ GG ++ A T  G +  +G    G+LG G       P+ V   +P+
Sbjct: 658 AVSGLP-SGVTAIAAGGWYTCARTSSGGVRCWGANGSGQLGDGTTTKRSTPVAVS-GLPS 715

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              A            +A GG HT A++ 
Sbjct: 716 GVTA------------IAAGGEHTCALMS 732



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 165/388 (42%), Gaps = 51/388 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WGS   GQLG G+   R     V  L P  V ++ AG  ++ A        
Sbjct: 119 LTSSGEVWCWGSNFYGQLGDGSYTTRSTPVAVSGL-PSGVTAIAAGGWHTCARTSSGGVW 177

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   + P  V+ L + ++   A G  H  A    G  + WGGN YG
Sbjct: 178 CWGGNYRGQLGDGTTTDRSTPVAVSGLPS-EVTAIAAGDAHTCARMSSGEVWCWGGNNYG 236

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+       T   +     +P        V  +AAGG H+  LT  G V  WG  +  
Sbjct: 237 QLGDGSYTDSSTPVAVSG---LPSG------VTAIAAGGVHTCALTGSGGVRCWGANYSG 287

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S P  V GL   V  IA G +H  AL   G +W WG N  GQLG G T  
Sbjct: 288 QLGNGLTFGRSTPGAVSGLPSGVTAIAAGDYHTCALTGSGGVWCWGGNYSGQLGDGTTTA 347

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
           RS P+ V GL SG+    IAAG +H+ AL   G V  WG  + G+L  GD   +++  P 
Sbjct: 348 RSTPVAVSGLPSGVE--TIAAGDYHTCALMSSGGVRCWGHNDRGQL--GDGTTTARSTPV 403

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            V+ L    +  ++ G  H+ A T  G ++ +G    G+LG G    +  P+ V      
Sbjct: 404 AVSGLP-SGVTAIAAGRLHTCARTSSGGVWCWGDNSDGQLGDGSFTDSSTPVAV------ 456

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                 GV+       +A GG HT A+ 
Sbjct: 457 -SGLASGVET------IAAGGWHTCALT 477



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 150/352 (42%), Gaps = 38/352 (10%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------- 55
           S+  +  WG  + G+LG G+  +      V  L P  V ++ AG  ++ A+         
Sbjct: 70  SSGGVWCWGGNDFGRLGDGSYTDSSTPVAVSGL-PSGVTAIAAGGAHTCALTSSGEVWCW 128

Query: 56  ---------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG   T + P  V+ L +  +   A GGWH  A    G  + WGGN  GQ 
Sbjct: 129 GSNFYGQLGDGSYTTRSTPVAVSGLPS-GVTAIAAGGWHTCARTSSGGVWCWGGNYRGQL 187

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPW 162
           G+        G    R   +     P   V  +AAG  H+      G VW WG       
Sbjct: 188 GD--------GTTTDRSTPVAVSGLPSE-VTAIAAGDAHTCARMSSGEVWCWGGNNYGQL 238

Query: 163 PPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             G     S PV V GL   V  IA G  H  AL   G +  WG N  GQLG G T  RS
Sbjct: 239 GDGSYTDSSTPVAVSGLPSGVTAIAAGGVHTCALTGSGGVRCWGANYSGQLGNGLTFGRS 298

Query: 222 QPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  V GL SG+T   IAAG +H+ ALT  G V+ WG    G+L  GD   +++  P  V
Sbjct: 299 TPGAVSGLPSGVTA--IAAGDYHTCALTGSGGVWCWGGNYSGQL--GDGTTTARSTPVAV 354

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + L    +  ++ G  H+ AL   G +  +G  D G+LG G       P+ V
Sbjct: 355 SGLP-SGVETIAAGDYHTCALMSSGGVRCWGHNDRGQLGDGTTTARSTPVAV 405



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/262 (34%), Positives = 118/262 (45%), Gaps = 18/262 (6%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +   A GG H  A    G  + WGGN++G+ G+       T   +     +P        
Sbjct: 55  VTAIAAGGGHTCARTSSGGVWCWGGNDFGRLGDGSYTDSSTPVAVSG---LPSG------ 105

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPW----PPGDIKQISVPVRVQGLEQ-VKLIAVGAF 190
           V  +AAGG H+  LT  G VW WG  +      G     S PV V GL   V  IA G +
Sbjct: 106 VTAIAAGGAHTCALTSSGEVWCWGSNFYGQLGDGSYTTRSTPVAVSGLPSGVTAIAAGGW 165

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H  A    G +W WG N  GQLG G T  RS P+ V GL    +  IAAG  H+ A    
Sbjct: 166 HTCARTSSGGVWCWGGNYRGQLGDGTTTDRSTPVAVSGLP-SEVTAIAAGDAHTCARMSS 224

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GEV+ WG   +G+LG G    SS   P  V+ L    +  ++ GG H+ ALT  G +  +
Sbjct: 225 GEVWCWGGNNYGQLGDGSYTDSST--PVAVSGLP-SGVTAIAAGGVHTCALTGSGGVRCW 281

Query: 311 GRGDHGRLGYGRKVTTGQPMEV 332
           G    G+LG G       P  V
Sbjct: 282 GANYSGQLGNGLTFGRSTPGAV 303



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 116/242 (47%), Gaps = 24/242 (9%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGLEQ-VKLI 185
           +P   V  +AAGG H+   T  G VW WG         G     S PV V GL   V  I
Sbjct: 50  SPLQGVTAIAAGGGHTCARTSSGGVWCWGGNDFGRLGDGSYTDSSTPVAVSGLPSGVTAI 109

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHS 244
           A G  H  AL   G +W WG+N YGQLG G    RS P+ V GL SG+T   IAAGGWH+
Sbjct: 110 AAGGAHTCALTSSGEVWCWGSNFYGQLGDGSYTTRSTPVAVSGLPSGVTA--IAAGGWHT 167

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            A T  G V+ WG    G+L  GD   + +  P  V+ L  E +  ++ G  H+ A    
Sbjct: 168 CARTSSGGVWCWGGNYRGQL--GDGTTTDRSTPVAVSGLPSE-VTAIAAGDAHTCARMSS 224

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++ +G  ++G+LG G    +  P+ V   +P+   A            +A GG HT A
Sbjct: 225 GEVWCWGGNNYGQLGDGSYTDSSTPVAVS-GLPSGVTA------------IAAGGVHTCA 271

Query: 365 IV 366
           + 
Sbjct: 272 LT 273



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 94/241 (39%), Gaps = 33/241 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  WG    GQLG G   +R     V  L P  V ++ AG  ++ A+             
Sbjct: 533 VWCWGGNFAGQLGDGTTTDRSTPVAVSGL-PSGVTAIAAGDIHTCALTGSGGVWCWGGND 591

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T   + P  V+ L +  +   A G  +  A+   G  + WG N  GQ     
Sbjct: 592 FGQLGDGTTTNRSTPVAVSGLPS-GVTAIAAGLRYTCALTGSGGVWCWGYNLSGQ----- 645

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGD 166
              DD      R   +     P   V  +AAGG ++   T  G V  WG         G 
Sbjct: 646 --LDD--GTTSRSTPVAVSGLPSG-VTAIAAGGWYTCARTSSGGVRCWGANGSGQLGDGT 700

Query: 167 IKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             + S PV V GL   V  IA G  H  AL   G +W WG N+ GQLG G    R+ P+ 
Sbjct: 701 TTKRSTPVAVSGLPSGVTAIAAGGEHTCALMSSGGVWCWGRNDSGQLGDGRPLYRTTPVD 760

Query: 226 V 226
           V
Sbjct: 761 V 761


>gi|145594878|ref|YP_001159175.1| cell wall anchor domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145304215|gb|ABP54797.1| LPXTG-motif cell wall anchor domain [Salinispora tropica CNB-440]
          Length = 551

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 162/392 (41%), Gaps = 42/392 (10%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------- 55
           +T +I+AWG    GQ G G          V+      V ++     +SLA+         
Sbjct: 53  ATDTILAWGDNSFGQFGNGTTASSRTPVPVRLPVGTTVTAIAGSDTHSLALTSVGTVLAW 112

Query: 56  ---------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG T +   P  V     T +   A G  H LA+   G  +AWG N  GQ 
Sbjct: 113 GGNSFGQLGDGTTASSRTPVPVRLPVGTTVTAIAAGTSHSLAITATGAVFAWGDNAVGQL 172

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G+        G      + +P R      V  +A G  HS+ +   G    WG       
Sbjct: 173 GD--------GTTTDSSLPVPVRLPVGTTVTAIAGGLGHSLAVASTGATLAWGSNAFGQL 224

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G     S P+ V  L  V  +A G  H+LAL   G ++AWG N +GQLG G T   S 
Sbjct: 225 GDGTTTGSSTPITVPQLPTVTAVAAGDVHSLALTSTGTVYAWGANSFGQLGDGSTSDSST 284

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           PI V+  +G T   + +G  HS ALT  G    WG    G+LG G    SS   P  V +
Sbjct: 285 PIAVRVPAGTTATAVVSGADHSLALTAAGGALAWGDNGQGQLGNGATVGSST--PVAVRV 342

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
             G  +  V+    H+VA+T      ++ R + G+LG G    + +P  V +++P    A
Sbjct: 343 PGGATLTAVAIHRDHAVAVTSTATALAWSRNNEGQLGNGTTTDSSEP--VAVSLP----A 396

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
           G  +        VA G  H+LA+V+ Q   + 
Sbjct: 397 GTAI------TAVAVGDDHSLALVDAQATSTT 422



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 137/323 (42%), Gaps = 34/323 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  +++AWG    GQLG G          V+      V ++ AG+ +SLAI       
Sbjct: 103 LTSVGTVLAWGGNSFGQLGDGTTASSRTPVPVRLPVGTTVTAIAAGTSHSLAITATGAVF 162

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   ++P  V     T +   A G  H LAV   G   AWG N +G
Sbjct: 163 AWGDNAVGQLGDGTTTDSSLPVPVRLPVGTTVTAIAGGLGHSLAVASTGATLAWGSNAFG 222

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+       T       I +PQ       V  VAAG  HS+ LT  G V+ WG     
Sbjct: 223 QLGDGTTTGSST------PITVPQLP----TVTAVAAGDVHSLALTSTGTVYAWGANSFG 272

Query: 161 PWPPGDIKQISVP--VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               G     S P  VRV        +  GA H+LAL   G   AWG+N  GQLG G T 
Sbjct: 273 QLGDGSTSDSSTPIAVRVPAGTTATAVVSGADHSLALTAAGGALAWGDNGQGQLGNGATV 332

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             S P+ V+   G TL  +A    H+ A+T       W R   G+LG G    SS+  P 
Sbjct: 333 GSSTPVAVRVPGGATLTAVAIHRDHAVAVTSTATALAWSRNNEGQLGNGTTTDSSE--PV 390

Query: 279 KVNLLAGEDIVQVSCGGTHSVAL 301
            V+L AG  I  V+ G  HS+AL
Sbjct: 391 AVSLPAGTAITAVAVGDDHSLAL 413


>gi|428172054|gb|EKX40966.1| hypothetical protein GUITHDRAFT_46944, partial [Guillardia theta
           CCMP2712]
          Length = 355

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 160/329 (48%), Gaps = 37/329 (11%)

Query: 57  GKTKTENIPSQVNALS---NTKIVQA-AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
           G T    +P+ + +LS   N K V++   G  H   + + G  Y WG    GQ G +   
Sbjct: 15  GHTNNVPLPTGILSLSDPLNRKNVRSIGAGKSHSAVIAEDGDVYTWGRGWEGQLGHD--- 71

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVR---QVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  +  +I +     PK+  R    VA G  H+VV+T  G ++TWG+        G
Sbjct: 72  -------VVTEIELEPHIVPKMENRGSSAVACGRNHTVVVTDNGLIYTWGENKAGQLGTG 124

Query: 166 DIKQISVPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           D+K  + PV +     L  V  IA G FH +A+  +G +W+WG N+ GQLG G+T+    
Sbjct: 125 DLKSSNSPVLIDSALNLPSVLSIACGEFHTVAICIEGTIWSWGRNQCGQLGHGNTKTCYF 184

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V G++    +  A GG H+  LTD  ++Y WG   +G+LG   +DK+  + P  V+ 
Sbjct: 185 PTQVVGMAKKICIRAACGGQHTLVLTDANKIYAWGSNAYGQLGLNRSDKAV-LQPDIVDH 243

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L       V CG +HS+AL ++  I+++GR D G+LG G    T  P  VP  + A R+ 
Sbjct: 244 LRRSGACHVLCGYSHSMALMKNEQIYTWGRNDCGQLGLGHY--THSP--VPELVTALRSV 299

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
                     + +ACG  H +A V  + E
Sbjct: 300 R--------VQQIACGYDHCVAFVADEVE 320



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 159/360 (44%), Gaps = 46/360 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW----VCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
           + +WG  + GQLG+G+          + +   L    VRS+ AG  +S  I +DG     
Sbjct: 1   VYSWGKNKYGQLGLGHTNNVPLPTGILSLSDPLNRKNVRSIGAGKSHSAVIAEDGDVYTW 60

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        T+ E  P  V  + N      A G  H + V D G  Y WG N+ GQ
Sbjct: 61  GRGWEGQLGHDVVTEIELEPHIVPKMENRGSSAVACGRNHTVVVTDNGLIYTWGENKAGQ 120

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G    +  ++  ++   + +P        V  +A G  H+V +  EG +W+WG+     
Sbjct: 121 LGTGDLKSSNSPVLIDSALNLPS-------VLSIACGEFHTVAICIEGTIWSWGRNQCGQ 173

Query: 162 WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-Q 218
              G+ K    P +V G+ +   I  A G  H L L +   ++AWG+N YGQLG   + +
Sbjct: 174 LGHGNTKTCYFPTQVVGMAKKICIRAACGGQHTLVLTDANKIYAWGSNAYGQLGLNRSDK 233

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
              QP  V  L       +  G  HS AL  + ++Y WGR + G+LG G    S   VP+
Sbjct: 234 AVLQPDIVDHLRRSGACHVLCGYSHSMALMKNEQIYTWGRNDCGQLGLGHYTHSP--VPE 291

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDG---------HIFSFGRGDHGRLGYGRKVTTGQP 329
            V  L    + Q++CG  H VA   D          H++S+GRG+ G+LG+   ++   P
Sbjct: 292 LVTALRSVRVQQIACGYDHCVAFVADEVEPGMPPLEHVYSWGRGEEGQLGHNELLSRCTP 351



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 133/321 (41%), Gaps = 58/321 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV-------RSVVAGSRNSLAI 53
           +A    +  WG G +GQLG     E E       LEP+ V        S VA  RN   +
Sbjct: 51  IAEDGDVYTWGRGWEGQLGHDVVTEIE-------LEPHIVPKMENRGSSAVACGRNHTVV 103

Query: 54  CDD-----------------GKTKTENIPSQVN-ALSNTKIVQAAIGGWHCLAVDDQGRA 95
             D                 G  K+ N P  ++ AL+   ++  A G +H +A+  +G  
Sbjct: 104 VTDNGLIYTWGENKAGQLGTGDLKSSNSPVLIDSALNLPSVLSIACGEFHTVAICIEGTI 163

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG N+ GQ G       +T        V+    A K+ +R  A GG H++VLT    +
Sbjct: 164 WSWGRNQCGQLGH-----GNTKTCYFPTQVVGM--AKKICIR-AACGGQHTLVLTDANKI 215

Query: 156 WTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNE 208
           + WG     Q       K +  P  V  L +     V  G  H++AL ++  ++ WG N+
Sbjct: 216 YAWGSNAYGQLGLNRSDKAVLQPDIVDHLRRSGACHVLCGYSHSMALMKNEQIYTWGRND 275

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD---------GEVYGWGRG 259
            GQLG G       P  V  L  + +  IA G  H  A   D           VY WGRG
Sbjct: 276 CGQLGLGHYTHSPVPELVTALRSVRVQQIACGYDHCVAFVADEVEPGMPPLEHVYSWGRG 335

Query: 260 EHGRLGFGDNDKSSKMVPQKV 280
           E G+LG   N+  S+  P+ V
Sbjct: 336 EEGQLGH--NELLSRCTPRIV 354



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 20/171 (11%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG----LTLVDIAAGGWHSTALTDDGEVYGW 256
           +++WG N+YGQLG G T     P  +  LS       +  I AG  HS  + +DG+VY W
Sbjct: 1   VYSWGKNKYGQLGLGHTNNVPLPTGILSLSDPLNRKNVRSIGAGKSHSAVIAEDGDVYTW 60

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           GRG  G+LG  D     ++ P  V  +       V+CG  H+V +T +G I+++G    G
Sbjct: 61  GRGWEGQLGH-DVVTEIELEPHIVPKMENRGSSAVACGRNHTVVVTDNGLIYTWGENKAG 119

Query: 317 RLGYGRKVTTGQPMEV--PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +LG G   ++  P+ +   +N+P+  +             +ACG  HT+AI
Sbjct: 120 QLGTGDLKSSNSPVLIDSALNLPSVLS-------------IACGEFHTVAI 157


>gi|270001314|gb|EEZ97761.1| hect domain and RLD 2-like protein [Tribolium castaneum]
          Length = 3894

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 178/401 (44%), Gaps = 65/401 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   +V G +   A+  DGK       
Sbjct: 3032 TIYGWGHNHRGQLGGIEGAKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVYATGYG 3091

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  I + A+  GG HCLA+      Y+WG  + G+ G
Sbjct: 3092 AGGRLGIGGTDSVLVPTLLESIQHVFIKKIAVNSGGKHCLALSADNDVYSWGEGDDGKLG 3151

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                   +T               PKLI       +  +A GG HS  +T  G ++TWG+
Sbjct: 3152 HGNRLACET---------------PKLIEALQGYEIIDIACGGAHSAAITSTGQLYTWGK 3196

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  ++ L   K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 3197 GRYGRLGHGDSEDQLKPKLIEELVGYKVIDVACGSGDAQTLCITDDDNVWSWGDGDYGKL 3256

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P  ++ L+GL ++ +  G   S ALT  G VY WG+G++ RLG G  +  
Sbjct: 3257 GRGGSDGCKVPKKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHV 3316

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA + +G +F++G  D G+LG        +P  V
Sbjct: 3317 RR--PKKVAALQGKKIISIATGSLHCVACSDEGEVFTWGDNDEGQLGDDTTNAIQRPRLV 3374

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                         +  + I   VACG  HTLA   W T  +
Sbjct: 3375 -----------SALQGKKITN-VACGSAHTLA---WSTNNA 3400



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 158/314 (50%), Gaps = 32/314 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P Q + LS    +  A G      V  +G+ YA G    G+ G          R     
Sbjct: 2078 LPVQSDFLSQLWPIHIAGGSKSLFIVSHEGKLYACGEGTNGRLGLGHSNNVPYPR----- 2132

Query: 124  IVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
               P     + ++++VA  +GG H++ LT +G V++WG+        G+   +  P  ++
Sbjct: 2133 ---PIPFLSQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLNLDKPKMIE 2189

Query: 178  GLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
             L   K+  IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  ++ L G  +V
Sbjct: 2190 ALRSKKIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNITQLKPKLIKSLVGHRIV 2249

Query: 236  DIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
             +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +P  +  L   ++VQ+ C
Sbjct: 2250 QVACGSRDAQTLALTDEGWVFSWGDGDFGKLGRGGSEGCN--IPHNIERLNALEVVQIEC 2307

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   S+ALT+ G ++++G+GD+ RLG+G    + Q +  P  I + +      D++ I  
Sbjct: 2308 GAQFSLALTKTGEVWTWGKGDYFRLGHG----SDQHVRKPTVIESLK------DKKVIH- 2356

Query: 354  LVACGGRHTLAIVE 367
             VA G  H LA+ +
Sbjct: 2357 -VAVGALHCLAVTD 2369



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 161/341 (47%), Gaps = 59/341 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKTKT--- 61
            + A G G +G+LG+G++    +   +  L  Y ++ V   +G ++++A+  DGK  +   
Sbjct: 2109 LYACGEGTNGRLGLGHSNNVPYPRPIPFLSQYVIKKVAVHSGGKHAMALTLDGKVFSWGE 2168

Query: 62   -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          + P  + AL + KI   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 2169 GEDGKLGHGNRLNLDKPKMIEALRSKKIRDIACGSSHSAAITSSGELYTWGLGEYGRLG- 2227

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                 D+  ++            PKLI       + QVA G     ++ LT EG V++WG
Sbjct: 2228 ---HGDNITQL-----------KPKLIKSLVGHRIVQVACGSRDAQTLALTDEGWVFSWG 2273

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++        ++P  ++ L  ++++ +  GA  +LAL + G +W WG  +Y
Sbjct: 2274 D----GDFGKLGRGGSEGCNIPHNIERLNALEVVQIECGAQFSLALTKTGEVWTWGKGDY 2329

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G  Q   +P  ++ L    ++ +A G  H  A+TD G+VY WG  +HG+ G G  
Sbjct: 2330 FRLGHGSDQHVRKPTVIESLKDKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTT 2389

Query: 270  DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFS 309
              + K  P  V+ L    I +V+CG +HS+A T +D  + S
Sbjct: 2390 IVNRK--PALVHGLEDVHINRVACGSSHSIAWTLQDTQVVS 2428



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 143/310 (46%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +++   + +WG G+DG+LG GN    E   +++AL+ Y++  +  G              
Sbjct: 3133 LSADNDVYSWGEGDDGKLGHGNRLACETPKLIEALQGYEIIDIACG-------------- 3178

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                  G H  A+   G+ Y WG   YG+ G       D+   L
Sbjct: 3179 ----------------------GAHSAAITSTGQLYTWGKGRYGRLGH-----GDSEDQL 3211

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            +  + I +    K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 3212 KPKL-IEELVGYKVIDVACGSGDAQTLCITDDDNVWSWGD----GDYGKLGRGGSDGCKV 3266

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P +++ L  + +I V  G+  ++AL   G+++ WG  +Y +LG G  +   +P  V  L 
Sbjct: 3267 PKKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHVRRPKKVAALQ 3326

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A +D+GEV+ WG  + G+L  GD+  ++   P+ V+ L G+ I  
Sbjct: 3327 GKKIISIATGSLHCVACSDEGEVFTWGDNDEGQL--GDDTTNAIQRPRLVSALQGKKITN 3384

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 3385 VACGSAHTLA 3394



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + LS L                          
Sbjct: 3031 GTIYGWGHNHRGQLGGIEGAKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVYATGY 3090

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ D +VY WG G+ G+L
Sbjct: 3091 GAGGRLGIGGTDSVLVPTLLESIQHVFIKKIAVNSGGKHCLALSADNDVYSWGEGDDGKL 3150

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G  ++ +   P+ +  L G +I+ ++CGG HS A+T  G ++++G+G +GRLG+G
Sbjct: 3151 GHG--NRLACETPKLIEALQGYEIIDIACGGAHSAAITSTGQLYTWGKGRYGRLGHG 3205



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
            ++ WG N+  QLG         P+    LS L  + IA G      ++ +G++Y  G G 
Sbjct: 2057 VFVWGLNDKDQLGGMKGSKVKLPVQSDFLSQLWPIHIAGGSKSLFIVSHEGKLYACGEGT 2116

Query: 261  HGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            +GRLG G ++      P+ +  L+   I  V V  GG H++ALT DG +FS+G G+ G+L
Sbjct: 2117 NGRLGLGHSNNVP--YPRPIPFLSQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKL 2174

Query: 319  GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+G ++     ++ P  I A R+           + +ACG  H+ AI
Sbjct: 2175 GHGNRLN----LDKPKMIEALRSKK--------IRDIACGSSHSAAI 2209



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDD-- 56
            + S+  +  WG GE G+LG G+N  +    ++K+L  +++  V  GSR+  +LA+ D+  
Sbjct: 2209 ITSSGELYTWGLGEYGRLGHGDNITQLKPKLIKSLVGHRIVQVACGSRDAQTLALTDEGW 2268

Query: 57   --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G ++  NIP  +  L+  ++VQ   G    LA+   G  + WG  +
Sbjct: 2269 VFSWGDGDFGKLGRGGSEGCNIPHNIERLNALEVVQIECGAQFSLALTKTGEVWTWGKGD 2328

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   ++       +R+  VI      K+I   VA G  H + +T  G V+ WG   
Sbjct: 2329 YFRLGHGSDQH------VRKPTVIESLKDKKVI--HVAVGALHCLAVTDTGQVYAWGDND 2380

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLA 194
                  G       P  V GLE V +  +A G+ H++A
Sbjct: 2381 HGQQGNGTTIVNRKPALVHGLEDVHINRVACGSSHSIA 2418


>gi|189241718|ref|XP_968558.2| PREDICTED: similar to hect domain and RLD 2 [Tribolium castaneum]
          Length = 4733

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 181/401 (45%), Gaps = 65/401 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
            +I  WG    GQLG     + +     +AL   +   +V G +   A+  DGK       
Sbjct: 3871 TIYGWGHNHRGQLGGIEGAKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVYATGYG 3930

Query: 59   ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     T +  +P+ + ++ +  I + A+  GG HCLA+      Y+WG  + G+ G
Sbjct: 3931 AGGRLGIGGTDSVLVPTLLESIQHVFIKKIAVNSGGKHCLALSADNDVYSWGEGDDGKLG 3990

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                   +T               PKLI       +  +A GG HS  +T  G ++TWG+
Sbjct: 3991 HGNRLACET---------------PKLIEALQGYEIIDIACGGAHSAAITSTGQLYTWGK 4035

Query: 161  ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQL 212
                    GD +    P  ++ L   K+I V    G    L + +D  +W+WG+ +YG+L
Sbjct: 4036 GRYGRLGHGDSEDQLKPKLIEELVGYKVIDVACGSGDAQTLCITDDDNVWSWGDGDYGKL 4095

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G +     P  ++ L+GL ++ +  G   S ALT  G VY WG+G++ RLG G  +  
Sbjct: 4096 GRGGSDGCKVPKKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHV 4155

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  P+KV  L G+ I+ ++ G  H VA + +G +F++G  D G+LG      T   ++ 
Sbjct: 4156 RR--PKKVAALQGKKIISIATGSLHCVACSDEGEVFTWGDNDEGQLGDD----TTNAIQR 4209

Query: 333  PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
            P  + A +  G  +        VACG  HTLA   W T  +
Sbjct: 4210 PRLVSALQ--GKKITN------VACGSAHTLA---WSTNNA 4239



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 158/314 (50%), Gaps = 32/314 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P Q + LS    +  A G      V  +G+ YA G    G+ G          R     
Sbjct: 2917 LPVQSDFLSQLWPIHIAGGSKSLFIVSHEGKLYACGEGTNGRLGLGHSNNVPYPR----- 2971

Query: 124  IVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
               P     + ++++VA  +GG H++ LT +G V++WG+        G+   +  P  ++
Sbjct: 2972 ---PIPFLSQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKLGHGNRLNLDKPKMIE 3028

Query: 178  GLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
             L   K+  IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  ++ L G  +V
Sbjct: 3029 ALRSKKIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNITQLKPKLIKSLVGHRIV 3088

Query: 236  DIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
             +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +P  +  L   ++VQ+ C
Sbjct: 3089 QVACGSRDAQTLALTDEGWVFSWGDGDFGKLGRGGSEGCN--IPHNIERLNALEVVQIEC 3146

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   S+ALT+ G ++++G+GD+ RLG+G    + Q +  P  I + +      D++ I  
Sbjct: 3147 GAQFSLALTKTGEVWTWGKGDYFRLGHG----SDQHVRKPTVIESLK------DKKVIH- 3195

Query: 354  LVACGGRHTLAIVE 367
             VA G  H LA+ +
Sbjct: 3196 -VAVGALHCLAVTD 3208



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 115/203 (56%), Gaps = 16/203 (7%)

Query: 127 PQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKL 184
           PQ C    +L ++Q+       ++LT+ G V+     +   D +    P  + GL  + +
Sbjct: 462 PQNCDTLSELTIKQICCSDRTILILTQTGKVFFM---YYSSDTQ---CPQEMTGLSGINM 515

Query: 185 IAVGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           I + A     H LAL +D  +++WGN + G+LG GDT  + +P  +Q L G  ++D+  G
Sbjct: 516 IKIAAHPEGKHYLALTKDYEVYSWGNGDGGRLGHGDTSTKEEPTLIQALKGKDIIDVECG 575

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THS 298
           G +S A++ +G +Y WGRG +GRLG G  +    + P  ++ L+ E I++V+CG    H+
Sbjct: 576 GTYSAAISANGALYTWGRGNYGRLGHGTAEDC--LTPTMISALSDEHIIKVACGSFYAHT 633

Query: 299 VALTRDGHIFSFGRGDHGRLGYG 321
           + +T  G ++S+G GD+G+LG G
Sbjct: 634 LCITSQGKVYSWGDGDYGKLGRG 656



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 161/341 (47%), Gaps = 59/341 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKTKT--- 61
            + A G G +G+LG+G++    +   +  L  Y ++ V   +G ++++A+  DGK  +   
Sbjct: 2948 LYACGEGTNGRLGLGHSNNVPYPRPIPFLSQYVIKKVAVHSGGKHAMALTLDGKVFSWGE 3007

Query: 62   -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          + P  + AL + KI   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3008 GEDGKLGHGNRLNLDKPKMIEALRSKKIRDIACGSSHSAAITSSGELYTWGLGEYGRLG- 3066

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                 D+  ++            PKLI       + QVA G     ++ LT EG V++WG
Sbjct: 3067 ---HGDNITQL-----------KPKLIKSLVGHRIVQVACGSRDAQTLALTDEGWVFSWG 3112

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++        ++P  ++ L  ++++ +  GA  +LAL + G +W WG  +Y
Sbjct: 3113 D----GDFGKLGRGGSEGCNIPHNIERLNALEVVQIECGAQFSLALTKTGEVWTWGKGDY 3168

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G  Q   +P  ++ L    ++ +A G  H  A+TD G+VY WG  +HG+ G G  
Sbjct: 3169 FRLGHGSDQHVRKPTVIESLKDKKVIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGTT 3228

Query: 270  DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFS 309
              + K  P  V+ L    I +V+CG +HS+A T +D  + S
Sbjct: 3229 IVNRK--PALVHGLEDVHINRVACGSSHSIAWTLQDTQVVS 3267



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 22/233 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQ 196
           G H + LT++  V++WG         GD      P  +Q L+   +I V  G  ++ A+ 
Sbjct: 524 GKHYLALTKDYEVYSWGNGDGGRLGHGDTSTKEEPTLIQALKGKDIIDVECGGTYSAAIS 583

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW--HSTALTDDGEVY 254
            +GAL+ WG   YG+LG G  +    P  +  LS   ++ +A G +  H+  +T  G+VY
Sbjct: 584 ANGALYTWGRGNYGRLGHGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGKVY 643

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG G++G+LG G +D S   +P+ +  L    IVQV CG   SVAL+ DGH++++G+G+
Sbjct: 644 SWGDGDYGKLGRGGSDGSK--LPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVYTWGKGE 701

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             +LG+        P E   N+  P       DR+ +   V+ G  H LA+ +
Sbjct: 702 GWKLGH--------PTEE--NVRFPEMVEVLRDRKVVG--VSLGVSHVLALTD 742



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 143/310 (46%), Gaps = 58/310 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            +++   + +WG G+DG+LG GN    E   +++AL+ Y++  +  G              
Sbjct: 3972 LSADNDVYSWGEGDDGKLGHGNRLACETPKLIEALQGYEIIDIACG-------------- 4017

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                  G H  A+   G+ Y WG   YG+ G       D+   L
Sbjct: 4018 ----------------------GAHSAAITSTGQLYTWGKGRYGRLGH-----GDSEDQL 4050

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            +  + I +    K+I     +G   ++ +T + +VW+WG     GD  ++         V
Sbjct: 4051 KPKL-IEELVGYKVIDVACGSGDAQTLCITDDDNVWSWGD----GDYGKLGRGGSDGCKV 4105

Query: 173  PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            P +++ L  + +I V  G+  ++AL   G+++ WG  +Y +LG G  +   +P  V  L 
Sbjct: 4106 PKKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGTGEHVRRPKKVAALQ 4165

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  ++ IA G  H  A +D+GEV+ WG  + G+L  GD+  ++   P+ V+ L G+ I  
Sbjct: 4166 GKKIISIATGSLHCVACSDEGEVFTWGDNDEGQL--GDDTTNAIQRPRLVSALQGKKITN 4223

Query: 291  VSCGGTHSVA 300
            V+CG  H++A
Sbjct: 4224 VACGSAHTLA 4233



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 143/312 (45%), Gaps = 26/312 (8%)

Query: 34  ALEPYKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAAIG--GWH 85
            L    ++ +    R  L +   GK      +     P ++  LS   +++ A    G H
Sbjct: 467 TLSELTIKQICCSDRTILILTQTGKVFFMYYSSDTQCPQEMTGLSGINMIKIAAHPEGKH 526

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LA+      Y+WG  + G+ G       DT    + +  + Q    K I+  V  GGT+
Sbjct: 527 YLALTKDYEVYSWGNGDGGRLGH-----GDTST--KEEPTLIQALKGKDII-DVECGGTY 578

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAF--HNLALQE 197
           S  ++  G ++TWG+        G  +    P  +  L  E +  +A G+F  H L +  
Sbjct: 579 SAAISANGALYTWGRGNYGRLGHGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCITS 638

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            G +++WG+ +YG+LG G +     P  ++ L  + +V +  G   S AL++DG VY WG
Sbjct: 639 QGKVYSWGDGDYGKLGRGGSDGSKLPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVYTWG 698

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +GE  +LG    +      P+ V +L    +V VS G +H +ALT  G ++ +G+ ++ +
Sbjct: 699 KGEGWKLGHPTEENVR--FPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENKQ 756

Query: 318 LGYGRKVTTGQP 329
           +    ++   QP
Sbjct: 757 ICDSSELFVQQP 768



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 32/270 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG+G+ G+LG G+   +E   +++AL+   +  V  G   S AI  +G   T     
Sbjct: 536 VYSWGNGDGGRLGHGDTSTKEEPTLIQALKGKDIIDVECGGTYSAAISANGALYTWGRGN 595

Query: 62  ---------EN--IPSQVNALSNTKIVQAAIGGW--HCLAVDDQGRAYAWGGNEYGQCGE 108
                    E+   P+ ++ALS+  I++ A G +  H L +  QG+ Y+WG  +YG+ G 
Sbjct: 596 YGRLGHGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGKVYSWGDGDYGKLG- 654

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGD 166
              R    G  L R I   Q       + QV  G   SV L+ +GHV+TWG  + W  G 
Sbjct: 655 ---RGGSDGSKLPRLIEKLQNVK----IVQVYCGAQFSVALSEDGHVYTWGKGEGWKLGH 707

Query: 167 IKQ--ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             +  +  P  V+ L   K++ V  G  H LAL + G ++ WG NE  Q+         Q
Sbjct: 708 PTEENVRFPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENKQICDSSELFVQQ 767

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           P  ++ L G  +V +  G   S A TDD E
Sbjct: 768 PRLIEALKGQKVVGVCCGPAQSFAWTDDNE 797



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T T+  P+ + AL    I+    GG +  A+   G  Y WG   YG+ G        T
Sbjct: 550 GDTSTKEEPTLIQALKGKDIIDVECGGTYSAAISANGALYTWGRGNYGRLGH------GT 603

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
                   +I       +I     +   H++ +T +G V++WG     GD  ++      
Sbjct: 604 AEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGKVYSWGD----GDYGKLGRGGSD 659

Query: 171 --SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
              +P  ++ L+ VK++ V  GA  ++AL EDG ++ WG  E  +LG    +    P  V
Sbjct: 660 GSKLPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVYTWGKGEGWKLGHPTEENVRFPEMV 719

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L    +V ++ G  H  ALTD GEVYGWG+ E+ ++   D+ +     P+ +  L G+
Sbjct: 720 EVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENKQI--CDSSELFVQQPRLIEALKGQ 777

Query: 287 DIVQVSCGGTHSVALTRDG 305
            +V V CG   S A T D 
Sbjct: 778 KVVGVCCGPAQSFAWTDDN 796



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 56/177 (31%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-------------------------- 232
            G ++ WG+N  GQLG  +      P P + LS L                          
Sbjct: 3870 GTIYGWGHNHRGQLGGIEGAKVKIPTPCEALSTLRPVQLVGGEQTLFAVTADGKVYATGY 3929

Query: 233  -----------------TLVD-----------IAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                             TL++           + +GG H  AL+ D +VY WG G+ G+L
Sbjct: 3930 GAGGRLGIGGTDSVLVPTLLESIQHVFIKKIAVNSGGKHCLALSADNDVYSWGEGDDGKL 3989

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            G G  ++ +   P+ +  L G +I+ ++CGG HS A+T  G ++++G+G +GRLG+G
Sbjct: 3990 GHG--NRLACETPKLIEALQGYEIIDIACGGAHSAAITSTGQLYTWGKGRYGRLGHG 4044



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
            ++ WG N+  QLG         P+    LS L  + IA G      ++ +G++Y  G G 
Sbjct: 2896 VFVWGLNDKDQLGGMKGSKVKLPVQSDFLSQLWPIHIAGGSKSLFIVSHEGKLYACGEGT 2955

Query: 261  HGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            +GRLG G ++      P+ +  L+   I  V V  GG H++ALT DG +FS+G G+ G+L
Sbjct: 2956 NGRLGLGHSNNVP--YPRPIPFLSQYVIKKVAVHSGGKHAMALTLDGKVFSWGEGEDGKL 3013

Query: 319  GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G+G ++     ++ P  I A R+           + +ACG  H+ AI
Sbjct: 3014 GHGNRLN----LDKPKMIEALRSKK--------IRDIACGSSHSAAI 3048



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDD-- 56
            + S+  +  WG GE G+LG G+N  +    ++K+L  +++  V  GSR+  +LA+ D+  
Sbjct: 3048 ITSSGELYTWGLGEYGRLGHGDNITQLKPKLIKSLVGHRIVQVACGSRDAQTLALTDEGW 3107

Query: 57   --------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                          G ++  NIP  +  L+  ++VQ   G    LA+   G  + WG  +
Sbjct: 3108 VFSWGDGDFGKLGRGGSEGCNIPHNIERLNALEVVQIECGAQFSLALTKTGEVWTWGKGD 3167

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   ++       +R+  VI      K+I   VA G  H + +T  G V+ WG   
Sbjct: 3168 YFRLGHGSDQH------VRKPTVIESLKDKKVI--HVAVGALHCLAVTDTGQVYAWGDND 3219

Query: 161  --PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLA 194
                  G       P  V GLE V +  +A G+ H++A
Sbjct: 3220 HGQQGNGTTIVNRKPALVHGLEDVHINRVACGSSHSIA 3257



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + +WG G+ G+LG G ++  +   +++ L+  K+  V  G++ S+A+ +DG   
Sbjct: 636 ITSQGKVYSWGDGDYGKLGRGGSDGSKLPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVY 695

Query: 61  T--------------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T              EN+  P  V  L + K+V  ++G  H LA+ DQG  Y WG NE  
Sbjct: 696 TWGKGEGWKLGHPTEENVRFPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENK 755

Query: 105 QCGEEPE 111
           Q  +  E
Sbjct: 756 QICDSSE 762


>gi|91201899|emb|CAJ74959.1| similar to chromosomal condensation regulatory protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 620

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 159/331 (48%), Gaps = 57/331 (17%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
           AWG  EDGQLG G N+                                  ++T  +  Q+
Sbjct: 178 AWGLNEDGQLGDGTND----------------------------------SQTTPVAVQI 203

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
           NAL  T I     GG H +A+D  GR +AWG N  G+ G      +    +      +  
Sbjct: 204 NAL--TTITAVDCGGDHSMALDSLGRVWAWGYNGDGELGGGTTENNSNVPVPVPVPNLTD 261

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL 184
             A       ++AGG +S+ L+ +G V TWG         G+  Q SVP ++  L  +K 
Sbjct: 262 IIA-------ISAGGEYSIALSSDGSVLTWGANSDGQLGNGNTDQNSVPTKISSLPLMKG 314

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT---QPRSQPIPVQGLSGLTLVDIAAGG 241
           I+ G  H+LA+ EDG ++AWG N+ GQ+G G+     P   P+ VQGL+ +  V   AG 
Sbjct: 315 ISAGEAHSLAVTEDGFVYAWGLNDEGQIGNGEKSADNPVLNPVQVQGLTDIDAV--CAGA 372

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             S AL  DG V+ WG  + G+LG G N  S+   P +V  LA   I  V+CG  HS+A+
Sbjct: 373 TFSLALGIDGRVWAWGLNDEGQLGDGTNTNST--TPVEVTNLA--KISAVACGSDHSLAI 428

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            R+G + S+G  D G+LG G   ++  P++V
Sbjct: 429 -RNGKVKSWGLNDEGQLGDGSTRSSSAPLDV 458



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 143/297 (48%), Gaps = 43/297 (14%)

Query: 82  GGW-HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA 140
           GGW H LA+D +G+ +AWG NE GQ G+       T   ++ + +          +  V 
Sbjct: 162 GGWSHSLALDSEGKLWAWGLNEDGQLGDGTNDSQTTPVAVQINALT--------TITAVD 213

Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGD----------IKQISVPVRVQGLEQVKLIAVGAF 190
            GG HS+ L   G VW WG     GD             + VPV V  L  +  I+ G  
Sbjct: 214 CGGDHSMALDSLGRVWAWGY---NGDGELGGGTTENNSNVPVPVPVPNLTDIIAISAGGE 270

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +++AL  DG++  WG N  GQLG G+T   S P  +  L    +  I+AG  HS A+T+D
Sbjct: 271 YSIALSSDGSVLTWGANSDGQLGNGNTDQNSVPTKISSLP--LMKGISAGEAHSLAVTED 328

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G VY WG  + G++G G+    + ++   V +    DI  V  G T S+AL  DG ++++
Sbjct: 329 GFVYAWGLNDEGQIGNGEKSADNPVL-NPVQVQGLTDIDAVCAGATFSLALGIDGRVWAW 387

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL--VACGGRHTLAI 365
           G  D G+LG G    +  P+EV                  +AK+  VACG  H+LAI
Sbjct: 388 GLNDEGQLGDGTNTNSTTPVEV----------------TNLAKISAVACGSDHSLAI 428



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 147/307 (47%), Gaps = 43/307 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDDG---------- 57
           AWG   DG+LG G  E    V V   +     + ++ AG   S+A+  DG          
Sbjct: 230 AWGYNGDGELGGGTTENNSNVPVPVPVPNLTDIIAISAGGEYSIALSSDGSVLTWGANSD 289

Query: 58  ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                  T   ++P+++++L   K + A  G  H LAV + G  YAWG N+ GQ G   +
Sbjct: 290 GQLGNGNTDQNSVPTKISSLPLMKGISA--GEAHSLAVTEDGFVYAWGLNDEGQIGNGEK 347

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI- 170
             D+        ++ P +      +  V AG T S+ L  +G VW WG      D  Q+ 
Sbjct: 348 SADNP-------VLNPVQVQGLTDIDAVCAGATFSLALGIDGRVWAWGL----NDEGQLG 396

Query: 171 -------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                  + PV V  L ++  +A G+ H+LA++ +G + +WG N+ GQLG G T+  S P
Sbjct: 397 DGTNTNSTTPVEVTNLAKISAVACGSDHSLAIR-NGKVKSWGLNDEGQLGDGSTRSSSAP 455

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V GLS   +V +AAG  HS A+T  G +Y WG    G+LG G N   S   P+ ++L 
Sbjct: 456 LDVTGLS--DIVYVAAGESHSLAITSKGNIYVWGLNGDGQLGDGTN--RSSRTPKTIDLN 511

Query: 284 AGEDIVQ 290
            G   V+
Sbjct: 512 LGVTAVE 518



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 12/212 (5%)

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQISVPVRVQGLEQVKLI 185
           P ++  Q++ G +HS+ L  EG +W WG            D +   V V++  L  +  +
Sbjct: 153 PGVVTPQISGGWSHSLALDSEGKLWAWGLNEDGQLGDGTNDSQTTPVAVQINALTTITAV 212

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT-LVDIAAGGWHS 244
             G  H++AL   G +WAWG N  G+LG G T+  S       +  LT ++ I+AGG +S
Sbjct: 213 DCGGDHSMALDSLGRVWAWGYNGDGELGGGTTENNSNVPVPVPVPNLTDIIAISAGGEYS 272

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL+ DG V  WG    G+LG G+ D++S  VP K++ L    +  +S G  HS+A+T D
Sbjct: 273 IALSSDGSVLTWGANSDGQLGNGNTDQNS--VPTKISSLP--LMKGISAGEAHSLAVTED 328

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           G ++++G  D G++G G K +   P+  P+ +
Sbjct: 329 GFVYAWGLNDEGQIGNGEK-SADNPVLNPVQV 359



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           I+ G  H+LAL  +G LWAWG NE GQLG G    ++ P+ VQ  +  T+  +  GG HS
Sbjct: 160 ISGGWSHSLALDSEGKLWAWGLNEDGQLGDGTNDSQTTPVAVQINALTTITAVDCGGDHS 219

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL   G V+ WG    G LG G  + +S +           DI+ +S GG +S+AL+ D
Sbjct: 220 MALDSLGRVWAWGYNGDGELGGGTTENNSNVPVPVPVPNL-TDIIAISAGGEYSIALSSD 278

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G + ++G    G+LG G       P ++  ++P             + K ++ G  H+LA
Sbjct: 279 GSVLTWGANSDGQLGNGNTDQNSVPTKI-SSLP-------------LMKGISAGEAHSLA 324

Query: 365 IVE 367
           + E
Sbjct: 325 VTE 327



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 38/259 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++S  S++ WG+  DGQLG GN ++      + +L    ++ + AG  +SLA+ +DG   
Sbjct: 275 LSSDGSVLTWGANSDGQLGNGNTDQNSVPTKISSLP--LMKGISAGEAHSLAVTEDGFVY 332

Query: 58  --------------KTKTENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                         K+    +  P QV  L++   V A  G    LA+   GR +AWG N
Sbjct: 333 AWGLNDEGQIGNGEKSADNPVLNPVQVQGLTDIDAVCA--GATFSLALGIDGRVWAWGLN 390

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
           + GQ G+       T          P        +  VA G  HS+ + R G V +WG  
Sbjct: 391 DEGQLGDGTNTNSTT----------PVEVTNLAKISAVACGSDHSLAI-RNGKVKSWGLN 439

Query: 161 ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                  G  +  S P+ V GL  +  +A G  H+LA+   G ++ WG N  GQLG G  
Sbjct: 440 DEGQLGDGSTRSSSAPLDVTGLSDIVYVAAGESHSLAITSKGNIYVWGLNGDGQLGDGTN 499

Query: 218 QPRSQPIPVQGLSGLTLVD 236
           +    P  +    G+T V+
Sbjct: 500 RSSRTPKTIDLNLGVTAVE 518



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           TQP+  P P     G+    I+ G  HS AL  +G+++ WG  E G+LG G ND  +  V
Sbjct: 145 TQPQPAPTP-----GVVTPQISGGWSHSLALDSEGKLWAWGLNEDGQLGDGTNDSQTTPV 199

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             ++N L    I  V CGG HS+AL   G ++++G    G LG G
Sbjct: 200 AVQINALT--TITAVDCGGDHSMALDSLGRVWAWGYNGDGELGGG 242


>gi|301117542|ref|XP_002906499.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107848|gb|EEY65900.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 1711

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 178/400 (44%), Gaps = 72/400 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI-- 64
           + + G    G+LG G++ ER  +  +       +R V +G+     + +DG   T  +  
Sbjct: 323 LYSCGQNSYGELGTGDDIERHQLTSISLCGWDDIRQVASGNETLAVLTNDGVVLTCGLNK 382

Query: 65  -----------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                            P Q       K + A+ G  H +A+ D G AY+WG N+ GQ G
Sbjct: 383 SGQCGQGHFDERVMMLRPVQALRSQRVKFIAASNGCEHMIALTDSGLAYSWGYNDRGQLG 442

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ 160
            E               +  +   PKLI       +R  +    HS V+T  G ++ +G 
Sbjct: 443 HEN--------------LTTKVHVPKLIESLKDKKLRYASVSYHHSAVITDSGELYAFGM 488

Query: 161 PWPPGDIKQI--------SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                D  Q+        S P  V+G E  ++ ++A G +H +     G L+A G N+YG
Sbjct: 489 ----NDCGQLGLDHTQHQSTPQLVKGFEGTEISMVACGLYHTIICTATGGLFACGKNDYG 544

Query: 211 QLGTGDTQPRSQPIPVQGLSGL---TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           QLG G     ++ I V  L  L    +  +A+G +HS  +T+ G  + +GR ++G+LG G
Sbjct: 545 QLGLG----HNRQIKVASLVSLPNEMVSYVASGYYHSVVVTNSGRTFSFGRNDYGQLGIG 600

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
           +  K  + VP  V L A   +V+ +CG  H+V L+  G +F FGR + G+L  G + +  
Sbjct: 601 N--KVHQNVPNVVALSANTRMVRATCGCYHTVLLSEQGQVFVFGRNNKGQL--GNRGSAD 656

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             + VP+ +   +N+   VD       VA G   T  IVE
Sbjct: 657 ALLPVPLKVRPEKNSRRCVD-------VAAGFYTTSLIVE 689



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           +  G L++ G N YG+LGTGD   R Q   +       +  +A+G      LT+DG V  
Sbjct: 318 EASGELYSCGQNSYGELGTGDDIERHQLTSISLCGWDDIRQVASGNETLAVLTNDGVVLT 377

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRG 313
            G  + G+ G G  D+   M+ + V  L  + +  +  S G  H +ALT  G  +S+G  
Sbjct: 378 CGLNKSGQCGQGHFDERVMML-RPVQALRSQRVKFIAASNGCEHMIALTDSGLAYSWGYN 436

Query: 314 DHGRLGYGRKVT 325
           D G+LG+    T
Sbjct: 437 DRGQLGHENLTT 448



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 17/121 (14%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
           +T  + A G  + GQLG+G+N + +   +V +L    V  V +G  +S+ + + G+T + 
Sbjct: 531 ATGGLFACGKNDYGQLGLGHNRQIKVASLV-SLPNEMVSYVASGYYHSVVVTNSGRTFSF 589

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                          +N+P+ V   +NT++V+A  G +H + + +QG+ + +G N  GQ 
Sbjct: 590 GRNDYGQLGIGNKVHQNVPNVVALSANTRMVRATCGCYHTVLLSEQGQVFVFGRNNKGQL 649

Query: 107 G 107
           G
Sbjct: 650 G 650


>gi|125972780|ref|YP_001036690.1| dockerin type I cellulosome protein [Clostridium thermocellum ATCC
           27405]
 gi|256004969|ref|ZP_05429941.1| cellulosome protein dockerin type I [Clostridium thermocellum DSM
           2360]
 gi|281416977|ref|ZP_06247997.1| Dockerin type 1 [Clostridium thermocellum JW20]
 gi|385779304|ref|YP_005688469.1| Dockerin type 1 [Clostridium thermocellum DSM 1313]
 gi|419721626|ref|ZP_14248784.1| Dockerin type 1 protein [Clostridium thermocellum AD2]
 gi|419725441|ref|ZP_14252484.1| Dockerin type 1 protein [Clostridium thermocellum YS]
 gi|125713005|gb|ABN51497.1| Dockerin type 1 [Clostridium thermocellum ATCC 27405]
 gi|255991038|gb|EEU01148.1| cellulosome protein dockerin type I [Clostridium thermocellum DSM
           2360]
 gi|281408379|gb|EFB38637.1| Dockerin type 1 [Clostridium thermocellum JW20]
 gi|316940984|gb|ADU75018.1| Dockerin type 1 [Clostridium thermocellum DSM 1313]
 gi|380771190|gb|EIC05067.1| Dockerin type 1 protein [Clostridium thermocellum YS]
 gi|380782322|gb|EIC11962.1| Dockerin type 1 protein [Clostridium thermocellum AD2]
          Length = 469

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 140/277 (50%), Gaps = 18/277 (6%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           N P  +N LS  K V A  G  H LA+ + G  +AWG N   Q  E  ER  DT     R
Sbjct: 150 NEPVMINGLSGIKSVAA--GREHTLALQEDGTLWAWGNNYSLQLIEYMERDPDTKE---R 204

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQV 182
              IP +      ++ VAA  + ++++  +G VW +  P          +P  ++G   +
Sbjct: 205 FTSIPIKVETHSDIKYVAAKFSRTLIVKNDGTVWLYSLPPINTSSDAEYMPWEIKGFGDI 264

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-------DTQPRSQPIPVQGLSGLTLV 235
           K+  +G  H +AL+EDG +W WG N +GQLG G        T    +P   + LS   +V
Sbjct: 265 KMADIGTGHIVALREDGTVWTWGENVWGQLGNGWQQHHNIHTYIYFEPNQAKNLS--DIV 322

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IAAG  HS AL  DG V+ WG   +G LG G    +  + P+KV  L  EDIV +  G 
Sbjct: 323 SIAAGDAHSVALKSDGTVWTWGSNFNGELGNGTT--TYILEPKKVEGL--EDIVAIDAGI 378

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            H+VAL  DG ++ +G+  +G+LG G  + +  P++V
Sbjct: 379 GHTVALKADGTVWVWGKNSYGQLGNGTTMRSTVPIQV 415



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 126/262 (48%), Gaps = 23/262 (8%)

Query: 22  NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------KTKTENIPSQVN 69
           + +ER     +K      ++ V A    +L + +DG             +  E +P ++ 
Sbjct: 200 DTKERFTSIPIKVETHSDIKYVAAKFSRTLIVKNDGTVWLYSLPPINTSSDAEYMPWEIK 259

Query: 70  ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
              + K+  A IG  H +A+ + G  + WG N +GQ G   ++  +    +  +   P +
Sbjct: 260 GFGDIKM--ADIGTGHIVALREDGTVWTWGENVWGQLGNGWQQHHNIHTYIYFE---PNQ 314

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLI 185
                 +  +AAG  HSV L  +G VWTWG  +      G    I  P +V+GLE +  I
Sbjct: 315 AKNLSDIVSIAAGDAHSVALKSDGTVWTWGSNFNGELGNGTTTYILEPKKVEGLEDIVAI 374

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G  H +AL+ DG +W WG N YGQLG G T   + PI V+GL G  +V I AG   + 
Sbjct: 375 DAGIGHTVALKADGTVWVWGKNSYGQLGNGTTMRSTVPIQVEGLEG--IVAIQAGMECTI 432

Query: 246 ALTDDGEVYGWGRGEHGRLGFG 267
           A  +DG V+ WG+ + G+LG G
Sbjct: 433 AYKNDGTVWAWGKNDFGQLGDG 454



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 109/260 (41%), Gaps = 68/260 (26%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAF 190
           V Q  +G  HSV+L ++G VW  G     Q   P ++  ++ PV + GL  +K +A G  
Sbjct: 111 VIQFESGFAHSVLLKKDGTVWVLGNNGKGQLGLP-EVSAVNEPVMINGLSGIKSVAAGRE 169

Query: 191 HNLALQEDGALWAWGNNEYGQL-----GTGDTQPRSQPIP-------------------- 225
           H LALQEDG LWAWGNN   QL        DT+ R   IP                    
Sbjct: 170 HTLALQEDGTLWAWGNNYSLQLIEYMERDPDTKERFTSIPIKVETHSDIKYVAAKFSRTL 229

Query: 226 ----------------------------VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
                                       ++G   + + DI  G  H  AL +DG V+ WG
Sbjct: 230 IVKNDGTVWLYSLPPINTSSDAEYMPWEIKGFGDIKMADIGTG--HIVALREDGTVWTWG 287

Query: 258 RGEHGRLGFG-----DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
               G+LG G     +        P +   L+  DIV ++ G  HSVAL  DG ++++G 
Sbjct: 288 ENVWGQLGNGWQQHHNIHTYIYFEPNQAKNLS--DIVSIAAGDAHSVALKSDGTVWTWGS 345

Query: 313 GDHGRLGYGRKVTTGQPMEV 332
             +G LG G      +P +V
Sbjct: 346 NFNGELGNGTTTYILEPKKV 365



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+Q   LS+  IV  A G  H +A+   G  + WG N  G+ G        T  IL    
Sbjct: 312 PNQAKNLSD--IVSIAAGDAHSVALKSDGTVWTWGSNFNGELGNGT-----TTYILE--- 361

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
             P++      +  + AG  H+V L  +G VW WG+        G   + +VP++V+GLE
Sbjct: 362 --PKKVEGLEDIVAIDAGIGHTVALKADGTVWVWGKNSYGQLGNGTTMRSTVPIQVEGLE 419

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            +  I  G    +A + DG +WAWG N++GQLG G  +   +P+ V
Sbjct: 420 GIVAIQAGMECTIAYKNDGTVWAWGKNDFGQLGDGTFENILRPVKV 465



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 34/131 (25%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------------------- 41
           + S  ++  WGS  +G+LG G             LEP KV                    
Sbjct: 334 LKSDGTVWTWGSNFNGELGNG--------TTTYILEPKKVEGLEDIVAIDAGIGHTVALK 385

Query: 42  ---SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYA 97
              +V    +NS     +G T    +P QV  L     +QA   G  C +A  + G  +A
Sbjct: 386 ADGTVWVWGKNSYGQLGNGTTMRSTVPIQVEGLEGIVAIQA---GMECTIAYKNDGTVWA 442

Query: 98  WGGNEYGQCGE 108
           WG N++GQ G+
Sbjct: 443 WGKNDFGQLGD 453



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 14/80 (17%)

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           ++Q   G  HSV L +DG ++  G    G+LG         P    +N P   N   G+ 
Sbjct: 111 VIQFESGFAHSVLLKKDGTVWVLGNNGKGQLGL--------PEVSAVNEPVMINGLSGI- 161

Query: 348 RRWIAKLVACGGRHTLAIVE 367
                K VA G  HTLA+ E
Sbjct: 162 -----KSVAAGREHTLALQE 176


>gi|426232148|ref|XP_004010096.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Ovis aries]
          Length = 992

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 144/301 (47%), Gaps = 44/301 (14%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDDTGRILRRDIVIPQRCAPKL 134
           G  H L +   G   + G N  GQ G       E+PER             IP      L
Sbjct: 3   GEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPER-------------IP--ALETL 47

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS-VPVRVQGLEQVKLI--AV 187
            V  V+ G  HS+ +  +G V+ WG         G++K+ + +P +++ L  +K+I  A 
Sbjct: 48  HVALVSCGKEHSLAVCHKGRVFAWGAASEGQLGIGELKETTFIPKKIKTLADIKIIQVAC 107

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL EDG +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 108 GHYHSLALSEDGQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 167

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G+N    +  P  V  L    +V +SCG  H+  LT+DG
Sbjct: 168 LSLSGTSFGWGSNNAGQLALSGNNAPVQRYKPVLVGALKTLSVVFISCGYEHTAVLTQDG 227

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +F+FG   +G+LG+        P  V       R  G       +   + CG  HTLA 
Sbjct: 228 KVFTFGDNSYGQLGHDSTAEKRGPQLV------ERIEG-------LVSQIDCGSYHTLAY 274

Query: 366 V 366
           V
Sbjct: 275 V 275



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 133/297 (44%), Gaps = 57/297 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ + G    GQLG       E    + ALE   V  V  G  +SLA+C  G+  
Sbjct: 10  LLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLHVALVSCGKEHSLAVCHKGRVF 69

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +T  IP ++  L++ KI+Q A G +H LA+ + G+ ++WG N +
Sbjct: 70  AWGAASEGQLGIGELKETTFIPKKIKTLADIKIIQVACGHYHSLALSEDGQVFSWGKNSH 129

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 130 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSF 175

Query: 157 TWGQPWPPGDIKQISV-----------PVRVQGLE--QVKLIAVGAFHNLALQEDGALWA 203
            WG      +  Q+++           PV V  L+   V  I+ G  H   L +DG ++ 
Sbjct: 176 GWGS----NNAGQLALSGNNAPVQRYKPVLVGALKTLSVVFISCGYEHTAVLTQDGKVFT 231

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259
           +G+N YGQLG   T  +  P  V+ + GL +  I  G +H+ A +   G+V  +GRG
Sbjct: 232 FGDNSYGQLGHDSTAEKRGPQLVERIEGL-VSQIDCGSYHTLAYVYTTGQVVSFGRG 287



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 64/179 (35%)

Query: 239 AGGWHSTALTDD------------------------------------------------ 250
           +G  HS  L  D                                                
Sbjct: 2   SGEHHSLLLLSDGTVQSCGDNSRGQLGRKGTPRGEQPERIPALETLHVALVSCGKEHSLA 61

Query: 251 ----GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
               G V+ WG    G+LG G+  K +  +P+K+  LA   I+QV+CG  HS+AL+ DG 
Sbjct: 62  VCHKGRVFAWGAASEGQLGIGEL-KETTFIPKKIKTLADIKIIQVACGHYHSLALSEDGQ 120

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +FS+G+  HG+LG G++  +          P    + +G+    +A+ VA GG H+ A+
Sbjct: 121 VFSWGKNSHGQLGLGKEFPSQAS-------PQRVRSLEGIP---LAQ-VAAGGAHSFAL 168


>gi|428179449|gb|EKX48320.1| hypothetical protein GUITHDRAFT_162457 [Guillardia theta CCMP2712]
          Length = 580

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 189/421 (44%), Gaps = 91/421 (21%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR----------------------- 41
           TS+  WG  E G+LG G+         +  LEP ++R                       
Sbjct: 24  TSLQGWG--EFGRLGHGDT--------LSQLEPKRLRFDKRFPVSLSFTALAHESLNGAI 73

Query: 42  SVVAGSRNSLAICDDGKTKT----------------ENIPSQVNALSNTKIVQAAIGGWH 85
            V  G  +++A+ +DG+  +                + +P+ V ALSN ++   A G +H
Sbjct: 74  YVACGGHHTVAVTEDGEVVSWGWGNEGQLGSGNAFDQTVPAVVKALSNHRVCGVACGYYH 133

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
              V D G    WG    GQ G+     D T  +L R +           +RQ+A G  H
Sbjct: 134 TAVVTDVGLVMCWGKGNSGQLGQ----GDWTSSLLPRTVSTLY----NEKIRQIACGMAH 185

Query: 146 SVVLTREGHVWTWGQPWP--------PGDIKQISVP--VRVQGLEQVKLIAVGAFHNLAL 195
           ++ L+  G +++WG              +   ++ P  VRV   E+ + IA G+ H +A+
Sbjct: 186 TLALSVNGEIYSWGAGADGQLGVGKHQEETADVATPQKVRVDEEEKFEFIACGSRHCMAI 245

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPV-QGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            +D  L++WG    G+LG GD++ R  P  V + +  L +  +AAGG H+  L+D+GE++
Sbjct: 246 TDDCRLFSWGLGADGRLGLGDSESRFSPTVVRRSIENLRICYVAAGGHHTAVLSDNGEIF 305

Query: 255 GWGRGEHGRLGFGDND-----KSSKMVPQKVNLLA-----GEDIVQVSCGGTHSVALTRD 304
             GRG +G+LG GD D     K ++ +     LL       + I++ +CG TH++ ++  
Sbjct: 306 TCGRGSYGQLGHGDADPQLTLKKARALRHGCLLLHIVQLRDKKIIKAACGDTHTLVISTA 365

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G +F++G  + G+LG G       P+E+                R +   V+CG  H+ A
Sbjct: 366 GEVFAWGAAEDGQLGTGGTEGANSPVEL-------------TSLRGLVGDVSCGLVHSAA 412

Query: 365 I 365
           +
Sbjct: 413 V 413



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 17/224 (7%)

Query: 151 REGHVWTWGQPWPPGDIKQISVPVRV-------QGLEQVKLIAVGAFHNLALQEDGALWA 203
           R GH  T  Q  P         PV +       + L     +A G  H +A+ EDG + +
Sbjct: 34  RLGHGDTLSQLEPKRLRFDKRFPVSLSFTALAHESLNGAIYVACGGHHTVAVTEDGEVVS 93

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG    GQLG+G+   ++ P  V+ LS   +  +A G +H+  +TD G V  WG+G  G+
Sbjct: 94  WGWGNEGQLGSGNAFDQTVPAVVKALSNHRVCGVACGYYHTAVVTDVGLVMCWGKGNSGQ 153

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           LG G  D +S ++P+ V+ L  E I Q++CG  H++AL+ +G I+S+G G  G+LG G+ 
Sbjct: 154 LGQG--DWTSSLLPRTVSTLYNEKIRQIACGMAHTLALSVNGEIYSWGAGADGQLGVGKH 211

Query: 324 VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  E   ++  P+     VD     + +ACG RH +AI +
Sbjct: 212 ------QEETADVATPQKV--RVDEEEKFEFIACGSRHCMAITD 247


>gi|218782845|ref|YP_002434163.1| chromosome condensation regulator RCC1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764229|gb|ACL06695.1| regulator of chromosome condensation RCC1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 437

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 167/354 (47%), Gaps = 50/354 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVV--KALEPYK-VRSVVAGSRNSLAICDDGKTKT- 61
           ++ AWG    GQLGIG N+       V  K+  P   V  V AG R+SLA+   G+  T 
Sbjct: 75  TVWAWGDNSSGQLGIGTNKASLSPVRVMHKSGAPLNGVLKVAAGERHSLALTAKGEVWTW 134

Query: 62  -ENIPSQV-------------------NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
            +N   Q+                   N L N  IV AA GG H LAV   G  +AWG N
Sbjct: 135 GDNSKGQLGDGFFYERRSPVKVRHIRTNPLEN--IVGAACGGKHSLAVASDGTVWAWGSN 192

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-- 159
             GQ G+   +     R + R         P   V+ VAAG  HS+ L+ +G VW WG  
Sbjct: 193 SDGQIGDGTLKNRQNPRQVMR------FGKPLAGVKAVAAGFAHSLALSVDGTVWAWGDN 246

Query: 160 QPWPPGDIKQI--SVPVRV-----QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           +    GD        PV+V     + L+ V  IA G   +LAL  DG +WAWGNN  GQL
Sbjct: 247 EFGQLGDCSDYDRKAPVQVMHSVDRPLDNVVAIAAGRAFSLALTRDGEVWAWGNNGVGQL 306

Query: 213 GTGDTQPRSQ-PIPVQGLSGLTLV---DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           G G      + P+PV+  +G+ L     I A G HS AL +DG V  WG G+ G+LG G 
Sbjct: 307 GMGPHNGFVRDPLPVRAANGVPLKGVRAITANGRHSLALMNDGSVLAWGAGDRGQLGQGA 366

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
            +      P   +L     ++ ++ G  HS+A+  +G + ++G    G+LG G+
Sbjct: 367 QNHEDH--PTLASL---HSVICLAAGRYHSLAVAENGAVLAWGDNQKGQLGIGK 415



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 29/303 (9%)

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
           AA GG+H L V + G  +AWG N  GQ G    +       L    V+ +  AP   V +
Sbjct: 60  AAGGGYHSLVVKNDGTVWAWGDNSSGQLGIGTNKAS-----LSPVRVMHKSGAPLNGVLK 114

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG-----LEQVKLIAVGA 189
           VAAG  HS+ LT +G VWTWG         G   +   PV+V+      LE +   A G 
Sbjct: 115 VAAGERHSLALTAKGEVWTWGDNSKGQLGDGFFYERRSPVKVRHIRTNPLENIVGAACGG 174

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV----QGLSGLTLVDIAAGGWHST 245
            H+LA+  DG +WAWG+N  GQ+G G  + R  P  V    + L+G+  V  AAG  HS 
Sbjct: 175 KHSLAVASDGTVWAWGSNSDGQIGDGTLKNRQNPRQVMRFGKPLAGVKAV--AAGFAHSL 232

Query: 246 ALTDDGEVYGWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           AL+ DG V+ WG  E G+LG   D D+ + +          +++V ++ G   S+ALTRD
Sbjct: 233 ALSVDGTVWAWGDNEFGQLGDCSDYDRKAPVQVMHSVDRPLDNVVAIAAGRAFSLALTRD 292

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++++G    G+LG G       P    +  P P  A +GV  + + + +   GRH+LA
Sbjct: 293 GEVWAWGNNGVGQLGMG-------PHNGFVRDPLPVRAANGVPLKGV-RAITANGRHSLA 344

Query: 365 IVE 367
           ++ 
Sbjct: 345 LMN 347



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 137/307 (44%), Gaps = 49/307 (15%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV---AGSRNSLAICDDGKT------- 59
           WG    GQLG G   ER     V+ +    + ++V    G ++SLA+  DG         
Sbjct: 134 WGDNSKGQLGDGFFYERRSPVKVRHIRTNPLENIVGAACGGKHSLAVASDGTVWAWGSNS 193

Query: 60  ---------KTENIPSQV----NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    K    P QV      L+  K V A     H LA+   G  +AWG NE+GQ 
Sbjct: 194 DGQIGDGTLKNRQNPRQVMRFGKPLAGVKAVAAGFA--HSLALSVDGTVWAWGDNEFGQL 251

Query: 107 GE--EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
           G+  + +RK     +   D        P   V  +AAG   S+ LTR+G VW WG     
Sbjct: 252 GDCSDYDRKAPVQVMHSVD-------RPLDNVVAIAAGRAFSLALTRDGEVWAWGNNGVG 304

Query: 163 -----PPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                P     +  +PVR      L+ V+ I     H+LAL  DG++ AWG  + GQLG 
Sbjct: 305 QLGMGPHNGFVRDPLPVRAANGVPLKGVRAITANGRHSLALMNDGSVLAWGAGDRGQLGQ 364

Query: 215 GDTQPRSQPIPVQGLSGL-TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           G       P     L+ L +++ +AAG +HS A+ ++G V  WG  + G+LG G  DK+ 
Sbjct: 365 GAQNHEDHPT----LASLHSVICLAAGRYHSLAVAENGAVLAWGDNQKGQLGIGKADKNF 420

Query: 274 KMVPQKV 280
             +P+K 
Sbjct: 421 HALPEKT 427



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 116/248 (46%), Gaps = 21/248 (8%)

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP-- 163
           C     R  +  R   R      R AP  +    A GG HS+V+  +G VW WG      
Sbjct: 32  CTSSQPRPSEEARTSAR-----HRNAPHPVWGIAAGGGYHSLVVKNDGTVWAWGDNSSGQ 86

Query: 164 --PGDIKQISVPVRVQG-----LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
              G  K    PVRV       L  V  +A G  H+LAL   G +W WG+N  GQLG G 
Sbjct: 87  LGIGTNKASLSPVRVMHKSGAPLNGVLKVAAGERHSLALTAKGEVWTWGDNSKGQLGDGF 146

Query: 217 TQPRSQPIPVQGLSGLTLVDI---AAGGWHSTALTDDGEVYGWGRGEHGRLGFG--DNDK 271
              R  P+ V+ +    L +I   A GG HS A+  DG V+ WG    G++G G   N +
Sbjct: 147 FYERRSPVKVRHIRTNPLENIVGAACGGKHSLAVASDGTVWAWGSNSDGQIGDGTLKNRQ 206

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           + + V +    LAG  +  V+ G  HS+AL+ DG ++++G  + G+LG         P++
Sbjct: 207 NPRQVMRFGKPLAG--VKAVAAGFAHSLALSVDGTVWAWGDNEFGQLGDCSDYDRKAPVQ 264

Query: 332 VPINIPAP 339
           V  ++  P
Sbjct: 265 VMHSVDRP 272



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 18/188 (9%)

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL---VDIAAG 240
           + A G +H+L ++ DG +WAWG+N  GQLG G  +    P+ V   SG  L   + +AAG
Sbjct: 59  IAAGGGYHSLVVKNDGTVWAWGDNSSGQLGIGTNKASLSPVRVMHKSGAPLNGVLKVAAG 118

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLG---FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
             HS ALT  GEV+ WG    G+LG   F +     K+   + N L  E+IV  +CGG H
Sbjct: 119 ERHSLALTAKGEVWTWGDNSKGQLGDGFFYERRSPVKVRHIRTNPL--ENIVGAACGGKH 176

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           S+A+  DG ++++G    G++G G       P +V +    P             K VA 
Sbjct: 177 SLAVASDGTVWAWGSNSDGQIGDGTLKNRQNPRQV-MRFGKPLAG---------VKAVAA 226

Query: 358 GGRHTLAI 365
           G  H+LA+
Sbjct: 227 GFAHSLAL 234



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 115/258 (44%), Gaps = 46/258 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYK-VRSVVAGSRNSLAICDDG- 57
           +AS  ++ AWGS  DGQ+G G  + R+    V++  +P   V++V AG  +SLA+  DG 
Sbjct: 180 VASDGTVWAWGSNSDGQIGDGTLKNRQNPRQVMRFGKPLAGVKAVAAGFAHSLALSVDGT 239

Query: 58  --------------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
                               K   + + S    L N  +V  A G    LA+   G  +A
Sbjct: 240 VWAWGDNEFGQLGDCSDYDRKAPVQVMHSVDRPLDN--VVAIAAGRAFSLALTRDGEVWA 297

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA---PKLIVRQVAAGGTHSVVLTREGH 154
           WG N  GQ G  P           RD  +P R A   P   VR + A G HS+ L  +G 
Sbjct: 298 WGNNGVGQLGMGPHNG------FVRD-PLPVRAANGVPLKGVRAITANGRHSLALMNDGS 350

Query: 155 VWTWGQPWPPGDIKQISVPVR-------VQGLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
           V  WG     GD  Q+    +       +  L  V  +A G +H+LA+ E+GA+ AWG+N
Sbjct: 351 VLAWGA----GDRGQLGQGAQNHEDHPTLASLHSVICLAAGRYHSLAVAENGAVLAWGDN 406

Query: 208 EYGQLGTGDTQPRSQPIP 225
           + GQLG G        +P
Sbjct: 407 QKGQLGIGKADKNFHALP 424


>gi|393202066|ref|YP_006463908.1| alpha-tubulin suppressor [Solibacillus silvestris StLB046]
 gi|327441397|dbj|BAK17762.1| alpha-tubulin suppressor [Solibacillus silvestris StLB046]
          Length = 797

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 154/306 (50%), Gaps = 57/306 (18%)

Query: 81  IGGWHCLAVDDQGRAYAWGGNEYGQCGEE--------PERKDDTGRILRRDIVIPQRCAP 132
           +G  H + + + G  + WG + YGQ G          P +K D  R+L            
Sbjct: 42  VGKNHFIVLKEDGSVWGWGDHSYGQLGANGSNTSSPIPIQKADGNRLLN----------- 90

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS------VPVRVQGL-EQVKLI 185
              ++ +AAG  H+V L R G VWTWG+    G +   +      +P +V G+  ++  I
Sbjct: 91  ---IKAIAAGSNHTVALDRNGEVWTWGRN-NQGQLGYTTANSFSNLPAKVTGITSKIIAI 146

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           + G +H LA+ E+G +WAWG N+YGQ+GT D  P    + V G+SG  ++ +AAG  HS 
Sbjct: 147 SAGEYHTLAVDENGQVWAWGRNDYGQIGT-DCNPALAHVQVCGVSG--IIAVAAGDNHSV 203

Query: 246 ALTDDGEVYGWGRGEHGRLGFG---DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           AL  DG V+ WGR   G+LG G   D + +   VP   N      IV +S G  H++AL 
Sbjct: 204 ALKSDGTVWAWGRNTVGQLGNGETTDINTNPTAVPGLSN------IVDISAGANHTLALK 257

Query: 303 RDG-HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           +D   I+++G    G+LG G   +  +P++V           +G+++    K +A G  H
Sbjct: 258 QDSTSIYAWGFNSSGQLGDGGLESKLRPIQV-----------EGMNK---VKTIAAGNNH 303

Query: 362 TLAIVE 367
           ++AI E
Sbjct: 304 SIAIKE 309



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 166/336 (49%), Gaps = 51/336 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKA--LEPYKVRSVVAGSRNSLAICDDGKTKT-- 61
           S+  WG    GQLG   +     + + KA       ++++ AGS +++A+  +G+  T  
Sbjct: 55  SVWGWGDHSYGQLGANGSNTSSPIPIQKADGNRLLNIKAIAAGSNHTVALDRNGEVWTWG 114

Query: 62  ---------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           N+P++V  ++ +KI+  + G +H LAVD+ G+ +AWG N+YGQ 
Sbjct: 115 RNNQGQLGYTTANSFSNLPAKVTGIT-SKIIAISAGEYHTLAVDENGQVWAWGRNDYGQI 173

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G +              +   Q C    I+  VAAG  HSV L  +G VW WG+      
Sbjct: 174 GTD----------CNPALAHVQVCGVSGII-AVAAGDNHSVALKSDGTVWAWGRNTVGQL 222

Query: 163 PPGDIKQISV-PVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPR 220
             G+   I+  P  V GL  +  I+ GA H LAL++D  +++AWG N  GQLG G  + +
Sbjct: 223 GNGETTDINTNPTAVPGLSNIVDISAGANHTLALKQDSTSIYAWGFNSSGQLGDGGLESK 282

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +PI V+G++ +    IAAG  HS A+ +DG V+ WGR   G         S++  P +V
Sbjct: 283 LRPIQVEGMNKVKT--IAAGNNHSIAIKEDGTVWTWGRHTSGT-------SSNRSTPIQV 333

Query: 281 NLLAGEDIVQVSCGG---THSVALTRDGHIFSFGRG 313
             L+    + +  GG   ++ +A+  DG ++ + + 
Sbjct: 334 KGLSSA--IAIGGGGDSDSYILAVKEDGTVWQWDKA 367



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 131/276 (47%), Gaps = 38/276 (13%)

Query: 56  DGKTKTENIPSQV---NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
           +G   +  IP Q    N L N K + A  G  H +A+D  G  + WG N  GQ G     
Sbjct: 70  NGSNTSSPIPIQKADGNRLLNIKAIAA--GSNHTVALDRNGEVWTWGRNNQGQLGYTTAN 127

Query: 113 KDDTGRILRRDIVIPQRCA---PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                        +P +      K+I   ++AG  H++ +   G VW WG+     D  Q
Sbjct: 128 SFSN---------LPAKVTGITSKIIA--ISAGEYHTLAVDENGQVWAWGR----NDYGQ 172

Query: 170 ISVP-------VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RS 221
           I          V+V G+  +  +A G  H++AL+ DG +WAWG N  GQLG G+T    +
Sbjct: 173 IGTDCNPALAHVQVCGVSGIIAVAAGDNHSVALKSDGTVWAWGRNTVGQLGNGETTDINT 232

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  V GLS   +VDI+AG  H+ AL  D   +Y WG    G+L  GD    SK+ P +V
Sbjct: 233 NPTAVPGLSN--IVDISAGANHTLALKQDSTSIYAWGFNSSGQL--GDGGLESKLRPIQV 288

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
             +    +  ++ G  HS+A+  DG ++++GR   G
Sbjct: 289 EGM--NKVKTIAAGNNHSIAIKEDGTVWTWGRHTSG 322



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 30/237 (12%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQPWPPGDI----KQISVPVRVQG-----LEQVKLIAVGA 189
           V  G  H +VL  +G VW WG     G +       S P+ +Q      L  +K IA G+
Sbjct: 40  VDVGKNHFIVLKEDGSVWGWGDH-SYGQLGANGSNTSSPIPIQKADGNRLLNIKAIAAGS 98

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALT 248
            H +AL  +G +W WG N  GQLG       S  P  V G++   ++ I+AG +H+ A+ 
Sbjct: 99  NHTVALDRNGEVWTWGRNNQGQLGYTTANSFSNLPAKVTGITS-KIIAISAGEYHTLAVD 157

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           ++G+V+ WGR ++G++G    D +  +   +V  ++G  I+ V+ G  HSVAL  DG ++
Sbjct: 158 ENGQVWAWGRNDYGQIG---TDCNPALAHVQVCGVSG--IIAVAAGDNHSVALKSDGTVW 212

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           ++GR   G+LG G    T      P  +P   N  D          ++ G  HTLA+
Sbjct: 213 AWGRNTVGQLGNGE---TTDINTNPTAVPGLSNIVD----------ISAGANHTLAL 256



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 6/139 (4%)

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD---IAAG 240
           ++ VG  H + L+EDG++W WG++ YGQLG   +   S PIP+Q   G  L++   IAAG
Sbjct: 39  VVDVGKNHFIVLKEDGSVWGWGDHSYGQLGANGSN-TSSPIPIQKADGNRLLNIKAIAAG 97

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H+ AL  +GEV+ WGR   G+LG+   +  S + P KV  +  + I+ +S G  H++A
Sbjct: 98  SNHTVALDRNGEVWTWGRNNQGQLGYTTANSFSNL-PAKVTGITSK-IIAISAGEYHTLA 155

Query: 301 LTRDGHIFSFGRGDHGRLG 319
           +  +G ++++GR D+G++G
Sbjct: 156 VDENGQVWAWGRNDYGQIG 174



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 14/134 (10%)

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +VD+  G  H   L +DG V+GWG   +G+LG   ++ SS +  QK +     +I  ++ 
Sbjct: 39  VVDV--GKNHFIVLKEDGSVWGWGDHSYGQLGANGSNTSSPIPIQKADGNRLLNIKAIAA 96

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  H+VAL R+G ++++GR + G+LGY    TT        N+PA      G+  + IA 
Sbjct: 97  GSNHTVALDRNGEVWTWGRNNQGQLGY----TTANSFS---NLPAKVT---GITSKIIA- 145

Query: 354 LVACGGRHTLAIVE 367
            ++ G  HTLA+ E
Sbjct: 146 -ISAGEYHTLAVDE 158



 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 23/161 (14%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD------- 56
           +TSI AWG    GQLG G  E +     V+ +   KV+++ AG+ +S+AI +D       
Sbjct: 260 STSIYAWGFNSSGQLGDGGLESKLRPIQVEGMN--KVKTIAAGNNHSIAIKEDGTVWTWG 317

Query: 57  ----GKTKTENIPSQVNALSNTKIVQAAIGG-----WHCLAVDDQGRAYAWGGNEYGQCG 107
               G +   + P QV  LS+      AIGG      + LAV + G  + W         
Sbjct: 318 RHTSGTSSNRSTPIQVKGLSSA----IAIGGGGDSDSYILAVKEDGTVWQWDKASSDSTT 373

Query: 108 EEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           + P  K  +G   + +    P     +++ R +   GT SV
Sbjct: 374 KLPIFKQVSGIDEVMKPSEFPFVQGSQVLFRYIGNAGTSSV 414


>gi|147899463|ref|NP_001085604.1| HECT and RLD domain containing E3 ubiquitin protein ligase 3
           [Xenopus laevis]
 gi|49256123|gb|AAH73004.1| MGC82587 protein [Xenopus laevis]
          Length = 1050

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 32/301 (10%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           T + + A GG H L + + G+ Y+ G N  GQ G   E               P     +
Sbjct: 34  TCVKEVACGGKHTLFLMEDGQVYSCGWNGEGQLGHSHEGTHPA----------PVATLAE 83

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKL--IA 186
             ++ +A G +HS+ L+ +G++++WG           ++  S +P  ++ L Q K+  ++
Sbjct: 84  EHIKHIACGQSHSLALSLQGNLYSWGAGNDGQLGHATVEHYSRIPRIIKKLSQQKIQQMS 143

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
            G  H LAL +DG L+ WG N +GQLG G+    +S P  V+ L G+ L  + AGG HS 
Sbjct: 144 CGDDHCLALGDDGQLFTWGQNTHGQLGLGNGFISQSSPQKVKSLEGIPLAQVTAGGSHSF 203

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           AL+  G V+GWG+   G+LG   ND+  K  P  V  L    +V +SCG  H+  LT+ G
Sbjct: 204 ALSLSGAVFGWGKNSAGQLGL--NDEQVKETPCHVKPLRTHKVVYISCGEEHTAILTKAG 261

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +F+FG G  G+LG+        P  V          G  V +      +ACG +HTLA 
Sbjct: 262 GLFTFGAGGSGQLGHDSLHNEINPRRVL------ELMGSEVSQ------IACGRKHTLAF 309

Query: 366 V 366
           V
Sbjct: 310 V 310



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 37/352 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV--CVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE-- 62
           ++ WG    GQLG G++ +      C         V+ V  G +++L + +DG+  +   
Sbjct: 1   MLCWGHSAFGQLGNGHSLKNAVSEPCACTFSLATCVKEVACGGKHTLFLMEDGQVYSCGW 60

Query: 63  ------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                         P+ V  L+   I   A G  H LA+  QG  Y+WG    GQ G   
Sbjct: 61  NGEGQLGHSHEGTHPAPVATLAEEHIKHIACGQSHSLALSLQGNLYSWGAGNDGQLGHAT 120

Query: 111 -ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------ 163
            E      RI+++  +  Q+      ++Q++ G  H + L  +G ++TWGQ         
Sbjct: 121 VEHYSRIPRIIKK--LSQQK------IQQMSCGDDHCLALGDDGQLFTWGQNTHGQLGLG 172

Query: 164 PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G I Q S P +V+ LE + L  +  G  H+ AL   GA++ WG N  GQLG  D Q + 
Sbjct: 173 NGFISQ-SSPQKVKSLEGIPLAQVTAGGSHSFALSLSGAVFGWGKNSAGQLGLNDEQVKE 231

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V+ L    +V I+ G  H+  LT  G ++ +G G  G+L  G +   +++ P++V 
Sbjct: 232 TPCHVKPLRTHKVVYISCGEEHTAILTKAGGLFTFGAGGSGQL--GHDSLHNEINPRRVL 289

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            L G ++ Q++CG  H++A     G +++FG GD G+LG G +     P  V
Sbjct: 290 ELMGSEVSQIACGRKHTLAFVPSSGTLYAFGCGDLGQLGTGHENNVKCPTVV 341



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 28/273 (10%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGH 154
            WG + +GQ G         G  L+  +  P  C   L   V++VA GG H++ L  +G 
Sbjct: 3   CWGHSAFGQLG--------NGHSLKNAVSEPCACTFSLATCVKEVACGGKHTLFLMEDGQ 54

Query: 155 VWT--WGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           V++  W      G   + + P  V  L  E +K IA G  H+LAL   G L++WG    G
Sbjct: 55  VYSCGWNGEGQLGHSHEGTHPAPVATLAEEHIKHIACGQSHSLALSLQGNLYSWGAGNDG 114

Query: 211 QLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           QLG    +  S+ P  ++ LS   +  ++ G  H  AL DDG+++ WG+  HG+LG G N
Sbjct: 115 QLGHATVEHYSRIPRIIKKLSQQKIQQMSCGDDHCLALGDDGQLFTWGQNTHGQLGLG-N 173

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
              S+  PQKV  L G  + QV+ GG+HS AL+  G +F +G+   G+LG   +    Q 
Sbjct: 174 GFISQSSPQKVKSLEGIPLAQVTAGGSHSFALSLSGAVFGWGKNSAGQLGLNDE----QV 229

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            E P ++   R              ++CG  HT
Sbjct: 230 KETPCHVKPLRTHK--------VVYISCGEEHT 254



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 35/249 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           ++ +WG+G DGQLG    E    +  ++K L   K++ +  G  + LA+ DDG+  T   
Sbjct: 104 NLYSWGAGNDGQLGHATVEHYSRIPRIIKKLSQQKIQQMSCGDDHCLALGDDGQLFTWGQ 163

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                         ++ P +V +L    + Q   GG H  A+   G  + WG N  GQ G
Sbjct: 164 NTHGQLGLGNGFISQSSPQKVKSLEGIPLAQVTAGGSHSFALSLSGAVFGWGKNSAGQLG 223

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
              E+  +T   ++     P R      V  ++ G  H+ +LT+ G ++T+G     G +
Sbjct: 224 LNDEQVKETPCHVK-----PLRTHK---VVYISCGEEHTAILTKAGGLFTFG-AGGSGQL 274

Query: 168 KQISV-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQP 219
              S+     P RV  L   +V  IA G  H LA     G L+A+G  + GQLGTG    
Sbjct: 275 GHDSLHNEINPRRVLELMGSEVSQIACGRKHTLAFVPSSGTLYAFGCGDLGQLGTGHENN 334

Query: 220 RSQPIPVQG 228
              P  V+G
Sbjct: 335 VKCPTVVKG 343



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 24/173 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++  WG    GQLG+ + + +E  C VK L  +KV  +  G  ++  +   G   
Sbjct: 205 LSLSGAVFGWGKNSAGQLGLNDEQVKETPCHVKPLRTHKVVYISCGEEHTAILTKAGGLF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E  P +V  L  +++ Q A G  H LA V   G  YA+G  + 
Sbjct: 265 TFGAGGSGQLGHDSLHNEINPRRVLELMGSEVSQIACGRKHTLAFVPSSGTLYAFGCGDL 324

Query: 104 GQCGEEPERKDDTGRILR-------RDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           GQ G   E       +++         I +   CA   IV+Q+ +GG  + VL
Sbjct: 325 GQLGTGHENNVKCPTVVKGKWASCSGQIPMHADCAAYNIVKQIFSGGNKAFVL 377



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+LG G + K++   P          + +V+CGG H++ L  DG ++S G    
Sbjct: 4   WGHSAFGQLGNGHSLKNAVSEPCACTFSLATCVKEVACGGKHTLFLMEDGQVYSCGWNGE 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+  + T           PAP      +    I K +ACG  H+LA+
Sbjct: 64  GQLGHSHEGTH----------PAPVAT---LAEEHI-KHIACGQSHSLAL 99


>gi|332233498|ref|XP_003265939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 2
           [Nomascus leucogenys]
          Length = 984

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 145/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE--PERKDDTGRILRRDIVIPQRCAP 132
           +++QAA G  H L +    R  + G N  GQ G    P          R ++  P +   
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAP----------RGELPEPIQALE 73

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV 187
            L V  V+ G  HS+ +  +G V+ WG         G++K+IS  P ++  L  +K+I V
Sbjct: 74  TLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGELKEISFTPKKITTLNGIKIIQV 133

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHS 244
             G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS
Sbjct: 134 SCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHS 193

Query: 245 TALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
            AL+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+
Sbjct: 194 FALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGAEHTAVLTQ 253

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG +F+FG    G+LGY        P  V I         DG     +   V CG  HTL
Sbjct: 254 DGKVFTFGDNRSGQLGYSPTPEKRGPQLVEI--------IDG-----LVSQVDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 126/294 (42%), Gaps = 51/294 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG       E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRGAPRGELPEPIQALETLNVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGELKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIK--------QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGN 206
            WG     G +         Q + P+ V  L+   V  I+ GA H   L +DG ++ +G+
Sbjct: 204 GWGSN-SAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGAEHTAVLTQDGKVFTFGD 262

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRG 259
           N  GQLG   T  +  P  V+ + GL +  +  G +H+ A     G+V  +G G
Sbjct: 263 NRSGQLGYSPTPEKRGPQLVEIIDGL-VSQVDCGSYHTLAYVHTTGQVVSFGHG 315


>gi|332233496|ref|XP_003265938.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 isoform 1
           [Nomascus leucogenys]
          Length = 1020

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 145/303 (47%), Gaps = 34/303 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE--PERKDDTGRILRRDIVIPQRCAP 132
           +++QAA G  H L +    R  + G N  GQ G    P          R ++  P +   
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAP----------RGELPEPIQALE 73

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV 187
            L V  V+ G  HS+ +  +G V+ WG         G++K+IS  P ++  L  +K+I V
Sbjct: 74  TLNVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGELKEISFTPKKITTLNGIKIIQV 133

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHS 244
             G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS
Sbjct: 134 SCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHS 193

Query: 245 TALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
            AL+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+
Sbjct: 194 FALSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGAEHTAVLTQ 253

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG +F+FG    G+LGY        P  V I         DG     +   V CG  HTL
Sbjct: 254 DGKVFTFGDNRSGQLGYSPTPEKRGPQLVEI--------IDG-----LVSQVDCGSYHTL 300

Query: 364 AIV 366
           A V
Sbjct: 301 AYV 303



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 126/294 (42%), Gaps = 51/294 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG       E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRGAPRGELPEPIQALETLNVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGELKEISFTPKKITTLNGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIK--------QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGN 206
            WG     G +         Q + P+ V  L+   V  I+ GA H   L +DG ++ +G+
Sbjct: 204 GWGSN-SAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGAEHTAVLTQDGKVFTFGD 262

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRG 259
           N  GQLG   T  +  P  V+ + GL +  +  G +H+ A     G+V  +G G
Sbjct: 263 NRSGQLGYSPTPEKRGPQLVEIIDGL-VSQVDCGSYHTLAYVHTTGQVVSFGHG 315


>gi|55832768|gb|AAV66897.1| truncated HERC6 [Homo sapiens]
          Length = 322

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 17/255 (6%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +++QAA G  H L +    R  + G N  GQ G    +        R ++  P +    L
Sbjct: 24  ELLQAASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQ--------RGELPEPIQALETL 75

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV-- 187
           IV  V+ G  HS+ +  +G V+ WG         G+ K+IS  P ++  L  +K+I V  
Sbjct: 76  IVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSC 135

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHSTA 246
           G +H+LAL +D  +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS A
Sbjct: 136 GHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFA 195

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G N       P  V  L    +V +SCG  H+  LT+DG
Sbjct: 196 LSLCGTSFGWGSNSAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDG 255

Query: 306 HIFSFGRGDHGRLGY 320
            +F+FG    G+LGY
Sbjct: 256 KVFTFGDNRSGQLGY 270



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 1/141 (0%)

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           A G  H+L L  +  + + G+N  GQLG    Q    P P+Q L  L +  ++ G  HS 
Sbjct: 29  ASGERHSLLLLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSL 88

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           A+   G V+ WG G  G+LG G+  + S   P+K+  L    I+QVSCG  HS+AL++D 
Sbjct: 89  AVCHKGRVFAWGAGSEGQLGIGEFKEIS-FTPKKIMTLNDIKIIQVSCGHYHSLALSKDS 147

Query: 306 HIFSFGRGDHGRLGYGRKVTT 326
            +FS+G+  HG+LG G++  +
Sbjct: 148 QVFSWGKNSHGQLGLGKEFPS 168



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 114/267 (42%), Gaps = 49/267 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + +   +++ G    GQLG    +  E    ++ALE   V  V  G  +SLA+C  G+  
Sbjct: 38  LLTNHRVLSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L++ KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVW 156
           GQ G   E               P + +P+ +       + QVAAGG HS  L+  G  +
Sbjct: 158 GQLGLGKE--------------FPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSF 203

Query: 157 TWGQPWPPGDIK--------QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGN 206
            WG     G +         Q + P+ V  L+   V  I+ G  H   L +DG ++ +G+
Sbjct: 204 GWGSN-SAGQLALSGRNVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGD 262

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           N  GQLG   T  +  P  V+ + GL 
Sbjct: 263 NRSGQLGYSPTPEKRGPQLVERIDGLV 289


>gi|182416055|ref|YP_001821121.1| cell surface receptor IPT/TIG domain-containing protein [Opitutus
           terrae PB90-1]
 gi|177843269|gb|ACB77521.1| cell surface receptor IPT/TIG domain protein [Opitutus terrae
           PB90-1]
          Length = 1848

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 169/377 (44%), Gaps = 58/377 (15%)

Query: 9   AWGSGEDGQLG--IGNNEEREWVCVVKA-----LEPYKVRSVVAGSRNSLAICDDG---- 57
           AWG    GQLG   G +   + V  V A     L    + ++    R+SLA+  DG    
Sbjct: 136 AWGDNSKGQLGNGTGGSMGNKSVVPVAADRSGVLAGKTLVALATSYRHSLALASDGTVYA 195

Query: 58  ----------------KTKTENIPSQVN---ALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
                            T    +P  V+    L+   I+  A G  H LA+   G  YAW
Sbjct: 196 WGYNANGQLGNGSGGLSTDISKVPVAVDMTGVLAGKTIIAIATGYEHSLALASDGIVYAW 255

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N  GQ G+           + R  V+  +      V  +AAG  HS+ +  +G V+ W
Sbjct: 256 GDNSEGQLGDGSTTDSKVPMAVDRTGVLTGKT-----VVAIAAGRNHSLAVASDGTVYAW 310

Query: 159 GQPWPP----GDIKQISVPVRVQGLE----QVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           G  +      G +   SVPV V   E     V  +A G  H+LA   DG ++AWG+N  G
Sbjct: 311 GDNYYAQLGDGSLTDSSVPVPVDLTELAGKSVADVAGGDRHSLAQASDGTVYAWGDNTNG 370

Query: 211 QLGTGDTQPRSQPIPVQ-----GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           Q+G  DT    +P PV       L+G T+V +AAGG+H+ AL  DG V  WG   +G+LG
Sbjct: 371 QMG--DTIAHLKPAPVSVTGGSALAGKTIVAVAAGGYHNLALASDGTVCTWGYNYNGQLG 428

Query: 266 FGDNDKSSK-MVPQKVN---LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              +    K  VP  VN    L G+ IV V  G +HS+AL  DG + ++G    G+L  G
Sbjct: 429 NNSSGAGEKSTVPIAVNSYGALPGKTIVAVGAGVSHSLALASDGALCTWGFNSQGQL--G 486

Query: 322 RKVTTGQPMEVPINIPA 338
              TT +   VP+ + A
Sbjct: 487 DNSTTNR--TVPVTVSA 501



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 148/317 (46%), Gaps = 39/317 (12%)

Query: 74  TKIVQAAI-GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-- 130
           T +V  A  GG   L V     +YAWG N  GQ G      + TG  +    V+P     
Sbjct: 112 TPVVAGAFAGGQRYLRVPPGTVSYAWGDNSKGQLG------NGTGGSMGNKSVVPVAADR 165

Query: 131 ----APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----------PGDIKQISVPVRV 176
               A K +V  +A    HS+ L  +G V+ WG                DI ++ V V +
Sbjct: 166 SGVLAGKTLV-ALATSYRHSLALASDGTVYAWGYNANGQLGNGSGGLSTDISKVPVAVDM 224

Query: 177 QGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG---LS 230
            G+   + +  IA G  H+LAL  DG ++AWG+N  GQLG G T     P+ V     L+
Sbjct: 225 TGVLAGKTIIAIATGYEHSLALASDGIVYAWGDNSEGQLGDGSTTDSKVPMAVDRTGVLT 284

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G T+V IAAG  HS A+  DG VY WG   + +LG G    SS  VP  +  LAG+ +  
Sbjct: 285 GKTVVAIAAGRNHSLAVASDGTVYAWGDNYYAQLGDGSLTDSSVPVPVDLTELAGKSVAD 344

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V+ G  HS+A   DG ++++G   +G++G     T       P+++      G  +  + 
Sbjct: 345 VAGGDRHSLAQASDGTVYAWGDNTNGQMGD----TIAHLKPAPVSV----TGGSALAGKT 396

Query: 351 IAKLVACGGRHTLAIVE 367
           I   VA GG H LA+  
Sbjct: 397 IVA-VAAGGYHNLALAS 412



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 113/265 (42%), Gaps = 48/265 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVK---ALEPYKVRSVVAGSRNSLAICDDG 57
           +AS   + AWG   +GQLG G+  + +    V     L    V ++ AG  +SLA+  DG
Sbjct: 246 LASDGIVYAWGDNSEGQLGDGSTTDSKVPMAVDRTGVLTGKTVVAIAAGRNHSLAVASDG 305

Query: 58  KT------------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
                                +  +P  +  L+   +   A G  H LA    G  YAWG
Sbjct: 306 TVYAWGDNYYAQLGDGSLTDSSVPVPVDLTELAGKSVADVAGGDRHSLAQASDGTVYAWG 365

Query: 100 GNEYGQCGE-----EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            N  GQ G+     +P     TG             A K IV  VAAGG H++ L  +G 
Sbjct: 366 DNTNGQMGDTIAHLKPAPVSVTGG---------SALAGKTIV-AVAAGGYHNLALASDGT 415

Query: 155 VWTWGQPW-------PPGDIKQISVPVRVQ---GLEQVKLIAVGA--FHNLALQEDGALW 202
           V TWG  +         G  ++ +VP+ V     L    ++AVGA   H+LAL  DGAL 
Sbjct: 416 VCTWGYNYNGQLGNNSSGAGEKSTVPIAVNSYGALPGKTIVAVGAGVSHSLALASDGALC 475

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQ 227
            WG N  GQLG   T  R+ P+ V 
Sbjct: 476 TWGFNSQGQLGDNSTTNRTVPVTVS 500


>gi|374297496|ref|YP_005047687.1| copper amine oxidase family protein [Clostridium clariflavum DSM
           19732]
 gi|359826990|gb|AEV69763.1| copper amine oxidase family protein [Clostridium clariflavum DSM
           19732]
          Length = 841

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 148/330 (44%), Gaps = 67/330 (20%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
           AWG  EDG +G G   +RE                                     P +V
Sbjct: 254 AWGKNEDGNIGDGTQIDRE------------------------------------TPVKV 277

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
             L+  K + A+ GG HCLAV+  G+ +AWG N+YGQ G   ++ + T          P 
Sbjct: 278 KNLTKIKRIAASFGG-HCLAVNTDGKVWAWGNNDYGQLGTGTKKAELT----------PV 326

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVG 188
                  +  VA G   S  L +EG+VWTWG         + S P +++ L  +  IA G
Sbjct: 327 MIDKLTQIEDVAVGYNFSAALDKEGNVWTWGN-------NENSYPKKLKDLNNIIDIAAG 379

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPR---SQPIPVQGLSGLTLVDIAAGGWHST 245
             H LAL+ DG +W WGN E   +  G  +     S P+ ++ L G  ++ IAA G +S 
Sbjct: 380 QSHLLALKNDGTVWIWGNFEEMPVYRGQVKKNTDTSLPVKIEELKG--IIAIAAQGGYSA 437

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            L DDG ++ WG  +       + D    +VP  +  L G  + +++ GG H +A   DG
Sbjct: 438 LLKDDGSMFVWGYLD------SELDIDDHLVPTIIEELNG--VREIAAGGGHLLAFKDDG 489

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            +++FGR  +G++G G  ++  +P     N
Sbjct: 490 SLWAFGRNTNGQIGDGTTISRKKPTVTAFN 519



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 103/179 (57%), Gaps = 9/179 (5%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
            V+ G +HSV + R+G VW WG+      +    +P RV+GLE++  I+ G  + LAL+ 
Sbjct: 193 HVSGGYSHSVAIKRDGTVWEWGETLSGNKL----IPERVEGLERIIDISAGNKYTLALKI 248

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           DG +WAWG NE G +G G    R  P+ V+ L+ +  +  + GG H  A+  DG+V+ WG
Sbjct: 249 DGTVWAWGKNEDGNIGDGTQIDRETPVKVKNLTKIKRIAASFGG-HCLAVNTDGKVWAWG 307

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
             ++G+LG G   K +++ P  ++ L    I  V+ G   S AL ++G+++++G  ++ 
Sbjct: 308 NNDYGQLGTG--TKKAELTPVMIDKLT--QIEDVAVGYNFSAALDKEGNVWTWGNNENS 362



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 25/226 (11%)

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQIS--V 172
           G  L  + +IP+R      +  ++AG  +++ L  +G VW WG+      GD  QI    
Sbjct: 214 GETLSGNKLIPERVEGLERIIDISAGNKYTLALKIDGTVWAWGKNEDGNIGDGTQIDRET 273

Query: 173 PVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           PV+V+ L ++K IA  +F  H LA+  DG +WAWGNN+YGQLGTG  +    P+ +  L+
Sbjct: 274 PVKVKNLTKIKRIA-ASFGGHCLAVNTDGKVWAWGNNDYGQLGTGTKKAELTPVMIDKLT 332

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            +   D+A G   S AL  +G V+ WG  E+               P+K+  L   +I+ 
Sbjct: 333 QIE--DVAVGYNFSAALDKEGNVWTWGNNENSY-------------PKKLKDL--NNIID 375

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           ++ G +H +AL  DG ++ +G  +   + Y  +V       +P+ I
Sbjct: 376 IAAGQSHLLALKNDGTVWIWGNFEEMPV-YRGQVKKNTDTSLPVKI 420



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 25/131 (19%)

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           V ++ G  HS A+  DG V+ WG    G          +K++P++V  L  E I+ +S G
Sbjct: 192 VHVSGGYSHSVAIKRDGTVWEWGETLSG----------NKLIPERVEGL--ERIIDISAG 239

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             +++AL  DG ++++G+ + G +G G ++    P++V              +   I ++
Sbjct: 240 NKYTLALKIDGTVWAWGKNEDGNIGDGTQIDRETPVKVK-------------NLTKIKRI 286

Query: 355 VACGGRHTLAI 365
            A  G H LA+
Sbjct: 287 AASFGGHCLAV 297


>gi|260832812|ref|XP_002611351.1| hypothetical protein BRAFLDRAFT_73256 [Branchiostoma floridae]
 gi|229296722|gb|EEN67361.1| hypothetical protein BRAFLDRAFT_73256 [Branchiostoma floridae]
          Length = 1152

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 158/317 (49%), Gaps = 40/317 (12%)

Query: 65  PSQVNALSNTKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           P  + +L++ ++++ A    G H +A+  +G  Y+WG  + G+ G       DT    + 
Sbjct: 180 PQLMESLADKEVLKVAAHPEGKHYMALTSEGEVYSWGNGDGGRLGH-----GDTNVCYKG 234

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
             V+       +IV      G H + LT EG V++WG         GD      P  V+G
Sbjct: 235 QKVL-------VIVYPYHPEGKHYMALTSEGEVYSWGNGDGGRLGHGDTNSREEPTLVRG 287

Query: 179 LEQVKL------IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           L   +L      I  G+ ++ A+  DG L+ WG   YG+LG G ++ +  P  V  L G 
Sbjct: 288 LSGKQLGRHVVHIVCGSTYSAAITADGELFTWGRGNYGRLGHGSSEDQLTPTLVVSLKGR 347

Query: 233 TLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            ++DI   +G   + A+TDDG V+ WG G++G+LG G +D      P+ ++ L G+DIV+
Sbjct: 348 RVIDICCGSGDAQTLAVTDDGTVWSWGDGDYGKLGRGGSDGCK--TPKIIDRLQGQDIVR 405

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V CG   S+ALT+ GHI+++G+GD  RLG+G    T + +  P  +   R     VD   
Sbjct: 406 VCCGAQFSLALTKTGHIWTWGKGDSQRLGHG----TEEHIRFPKQLEGLRGK-KVVD--- 457

Query: 351 IAKLVACGGRHTLAIVE 367
               VA G  H L + E
Sbjct: 458 ----VAVGSMHCLVMTE 470



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 30/269 (11%)

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCG-------EEPER-KDDTGRILRRDIVIPQRCAPKL 134
           G H +A+  +G  Y+WG  + G+ G       EEP   +  +G+ L R +V         
Sbjct: 248 GKHYMALTSEGEVYSWGNGDGGRLGHGDTNSREEPTLVRGLSGKQLGRHVV--------- 298

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--- 187
               +  G T+S  +T +G ++TWG+        G  +    P  V  L+  ++I +   
Sbjct: 299 ---HIVCGSTYSAAITADGELFTWGRGNYGRLGHGSSEDQLTPTLVVSLKGRRVIDICCG 355

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G    LA+ +DG +W+WG+ +YG+LG G +     P  +  L G  +V +  G   S A
Sbjct: 356 SGDAQTLAVTDDGTVWSWGDGDYGKLGRGGSDGCKTPKIIDRLQGQDIVRVCCGAQFSLA 415

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           LT  G ++ WG+G+  RLG G  +      P+++  L G+ +V V+ G  H + +T +G 
Sbjct: 416 LTKTGHIWTWGKGDSQRLGHGTEEHIR--FPKQLEGLRGKKVVDVAVGSMHCLVMTEEGE 473

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           ++ +GR D G+LG     T   P  +P++
Sbjct: 474 VYGWGRNDQGQLGDSSFSTKSDPTLMPLD 502



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 154/342 (45%), Gaps = 59/342 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC-----VVKALEPYKVRSVVAGSRNSLAICD 55
           + S   + +WG+G+ G+LG G+      VC     V+  + PY         ++ +A+  
Sbjct: 206 LTSEGEVYSWGNGDGGRLGHGDTN----VCYKGQKVLVIVYPYHPEG-----KHYMALTS 256

Query: 56  DGK----------------TKTENIPSQVNALSNTK----IVQAAIGGWHCLAVDDQGRA 95
           +G+                T +   P+ V  LS  +    +V    G  +  A+   G  
Sbjct: 257 EGEVYSWGNGDGGRLGHGDTNSREEPTLVRGLSGKQLGRHVVHIVCGSTYSAAITADGEL 316

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           + WG   YG+ G        T  ++   + +  R   ++I     +G   ++ +T +G V
Sbjct: 317 FTWGRGNYGRLGHGSSEDQLTPTLV---VSLKGR---RVIDICCGSGDAQTLAVTDDGTV 370

Query: 156 WTWGQPWPPGDIKQI-----------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAW 204
           W+WG     GD  ++            +  R+QG + V+ +  GA  +LAL + G +W W
Sbjct: 371 WSWGD----GDYGKLGRGGSDGCKTPKIIDRLQGQDIVR-VCCGAQFSLALTKTGHIWTW 425

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           G  +  +LG G  +    P  ++GL G  +VD+A G  H   +T++GEVYGWGR + G+L
Sbjct: 426 GKGDSQRLGHGTEEHIRFPKQLEGLRGKKVVDVAVGSMHCLVMTEEGEVYGWGRNDQGQL 485

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
             GD+  S+K  P  +  L G+ I  ++CG   S   T  GH
Sbjct: 486 --GDSSFSTKSDPTLMP-LDGKSISGIACGPAQSFCWTSTGH 524



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 14/110 (12%)

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           TG   P S     + L  L ++ +A       ALT  G VY         + F  ++   
Sbjct: 129 TGANSPNSSGHTCEMLGELGVLQLACAERCLIALTKTGRVY---------MCFYSSESQG 179

Query: 274 KMVPQKVNLLAGEDIVQVSCG--GTHSVALTRDGHIFSFGRGDHGRLGYG 321
              PQ +  LA +++++V+    G H +ALT +G ++S+G GD GRLG+G
Sbjct: 180 ---PQLMESLADKEVLKVAAHPEGKHYMALTSEGEVYSWGNGDGGRLGHG 226


>gi|449673459|ref|XP_002164132.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Hydra
            magnipapillata]
          Length = 2284

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 152/331 (45%), Gaps = 43/331 (12%)

Query: 57   GKTKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            G ++T   P  + ++ +  I + ++  GG HCLA+   G  ++WG  E G+ G    +  
Sbjct: 1510 GYSETVTSPRLLESIKHINIKKISVHSGGRHCLALSSDGEVFSWGEGEDGKLGHGNRQTS 1569

Query: 115  DTGRILRRDIVIPQR----CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                        P+R    C    I+  + AGG+HS  +   G ++TWG+        GD
Sbjct: 1570 SQ----------PKRIEFFCGK--IITNICAGGSHSAAIGLNGELYTWGKGRYGRLGHGD 1617

Query: 167  IKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                  P +V+ L+   ++ V    G    L +  D  +W+WG+ +YG+LG G +     
Sbjct: 1618 SDDQLKPKQVEALQFFFVLDVACGSGDAQTLCITNDDNVWSWGDGDYGKLGRGGSDGCKV 1677

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            P+ ++ LSG  +V +  G   S ALT  G +Y WG+G++ RLG G  +   +  P  V  
Sbjct: 1678 PMIIEDLSGKGIVKVECGSQFSMALTKYGVLYTWGKGDYYRLGHGTEEHVRR--PMMVTA 1735

Query: 283  LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
            L  + +  +SCG  H V  T +G ++ +G  D G+LG G  +    P      +      
Sbjct: 1736 LFNKIVTSISCGSLHCVVCTDEGEVYCWGDNDEGQLGDGTIIARQTPTLNTFLL------ 1789

Query: 343  GDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
               +DR      ++CG  HT+A   W T ++
Sbjct: 1790 NKKIDR------ISCGSAHTIA---WSTSKA 1811



 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 104/399 (26%), Positives = 172/399 (43%), Gaps = 65/399 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  WG  +  QLG     + +   +   L   + + +  GS+++  I + GK        
Sbjct: 560 VFMWGLNDKDQLGGLKGSKVKSPTLCDHLSSLQCKFIAGGSKSTFFITNKGKLYSCGESS 619

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
                    T     P  V  L+   + + ++  GG H +A+   G A++WG  E GQ G
Sbjct: 620 FGKLGIGDITGNVTSPRLVTGLNQLIVTKVSVHSGGNHVMALTSDGLAFSWGDGENGQLG 679

Query: 108 EEPERKDDTGRILRRDIVIPQRCA-PKLI-------VRQVAAGGTHSVVLTREGHVWTWG 159
                    G ++         C+ P LI       V  ++ G  HS  +    +++TWG
Sbjct: 680 H--------GNLMS--------CSKPHLIEAFVGKIVTDISCGSAHSAAIVENKYLYTWG 723

Query: 160 ----QPWPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQ 211
                    GD + I  P  V       ++ V         + + +D  +W+WG+ ++G+
Sbjct: 724 LGDFGRLGHGDEETILQPKFVTHFLGYNVVQVSCGSRDAQTVCITDDDKVWSWGDGDFGK 783

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG G ++    P+ V+ L GL +  I  G   + ALT  G V+ WG+G+  RLG G +  
Sbjct: 784 LGRGGSERCLIPVEVEQLRGLQICKILCGAQFTVALTKTGTVWTWGKGDFYRLGHGTDIH 843

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
             +  P+ V  L G+ ++ ++ G  H +A+T+DG +FS+G  DHG+LG G       P  
Sbjct: 844 VRQ--PKLVEGLRGKHVIDIAVGALHCLAVTQDGEVFSWGDNDHGQLGTGETDVKKVP-- 899

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
                    N   G+    I K VACG  H++A  E  T
Sbjct: 900 ---------NLITGLHNHRI-KYVACGSSHSIAWTEITT 928



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 46/325 (14%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--SVVAGSRNSLAICDDGKT----- 59
            + A G G +GQLG+G +E      ++++++   ++  SV +G R+ LA+  DG+      
Sbjct: 1496 VFATGYGNNGQLGLGYSETVTSPRLLESIKHINIKKISVHSGGRHCLALSSDGEVFSWGE 1555

Query: 60   -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                       +T + P ++       I     GG H  A+   G  Y WG   YG+ G 
Sbjct: 1556 GEDGKLGHGNRQTSSQPKRIEFFCGKIITNICAGGSHSAAIGLNGELYTWGKGRYGRLGH 1615

Query: 109  ---EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
               + + K      L+   V+   C          +G   ++ +T + +VW+WG     G
Sbjct: 1616 GDSDDQLKPKQVEALQFFFVLDVACG---------SGDAQTLCITNDDNVWSWGD----G 1662

Query: 166  DIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTG 215
            D  ++         VP+ ++ L    ++ V  G+  ++AL + G L+ WG  +Y +LG G
Sbjct: 1663 DYGKLGRGGSDGCKVPMIIEDLSGKGIVKVECGSQFSMALTKYGVLYTWGKGDYYRLGHG 1722

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
              +   +P+ V  L    +  I+ G  H    TD+GEVY WG  + G+L  GD    ++ 
Sbjct: 1723 TEEHVRRPMMVTALFNKIVTSISCGSLHCVVCTDEGEVYCWGDNDEGQL--GDGTIIARQ 1780

Query: 276  VPQKVNLLAGEDIVQVSCGGTHSVA 300
             P     L  + I ++SCG  H++A
Sbjct: 1781 TPTLNTFLLNKKIDRISCGSAHTIA 1805



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 131/279 (46%), Gaps = 42/279 (15%)

Query: 1   MASTTSIIA--WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD-- 56
           MA T+  +A  WG GE+GQLG GN        +++A     V  +  GS +S AI ++  
Sbjct: 659 MALTSDGLAFSWGDGENGQLGHGNLMSCSKPHLIEAFVGKIVTDISCGSAHSAAIVENKY 718

Query: 57  ------------GKTKTENI--PSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGG 100
                       G    E I  P  V       +VQ + G      + + D  + ++WG 
Sbjct: 719 LYTWGLGDFGRLGHGDEETILQPKFVTHFLGYNVVQVSCGSRDAQTVCITDDDKVWSWGD 778

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            ++G+ G     +  + R L   I +       L + ++  G   +V LT+ G VWTWG+
Sbjct: 779 GDFGKLG-----RGGSERCL---IPVEVEQLRGLQICKILCGAQFTVALTKTGTVWTWGK 830

Query: 161 PWPPGDIKQ--------ISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
               GD  +        +  P  V+GL  + V  IAVGA H LA+ +DG +++WG+N++G
Sbjct: 831 ----GDFYRLGHGTDIHVRQPKLVEGLRGKHVIDIAVGALHCLAVTQDGEVFSWGDNDHG 886

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           QLGTG+T  +  P  + GL    +  +A G  HS A T+
Sbjct: 887 QLGTGETDVKKVPNLITGLHNHRIKYVACGSSHSIAWTE 925



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDG 305
            TD   V+  G G +G+LG G ++  +   P+ +  +   +I ++S   GG H +AL+ DG
Sbjct: 1491 TDGALVFATGYGNNGQLGLGYSETVTS--PRLLESIKHINIKKISVHSGGRHCLALSSDG 1548

Query: 306  HIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +FS+G G+ G+LG+G + T+ QP  +
Sbjct: 1549 EVFSWGEGEDGKLGHGNRQTSSQPKRI 1575


>gi|148228601|ref|NP_001089142.1| retinitis pigmentosa GTPase regulator [Xenopus laevis]
 gi|77808101|gb|ABB03732.1| RPGR [Xenopus laevis]
          Length = 727

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 32/319 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL + K+V A+ G  H L   +QG+ Y+ GGN  GQ G      D +GR   ++I
Sbjct: 80  PTCVKALKSEKVVFASCGRNHTLLYTEQGKLYSSGGNSEGQLG----LGDTSGRTSFQEI 135

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQ--ISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG       G  K+   S P ++   +
Sbjct: 136 SF---FNTQYKIKQLSAGSNTSAALTVDGKLFMWGDNSEGQLGLEKEAIYSTPQKIDIGK 192

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG--TGDTQPRSQPIPVQGLSGLTLVDIA 238
            +  I+ G +H+  + +DG L+ +G  E G+LG  +   +   +P  V GLSG   + ++
Sbjct: 193 PISWISCGYYHSAFVTQDGELYTFGEPENGKLGLPSDKLKKHKKPQRVSGLSGKVKI-VS 251

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+ A+T+  EVY +G G+ G+LG G     +++ P+ V++L  + I+ V+CG  H+
Sbjct: 252 CGGEHTIAVTEK-EVYTFGLGQFGQLGHGTFIFETQL-PKAVDVLTKKTILYVTCGENHT 309

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI---NIPAPRNAGDGVDRRWIAKLV 355
             +T  G +++FG G HG+LG G +  T Q   VPI   N             ++  + V
Sbjct: 310 AVITDKGLLYTFGDGRHGKLGLGEENFTNQ--FVPILCSNF-----------LKFTVQSV 356

Query: 356 ACGGRHTLAIVEWQTEESK 374
           ACGG H L     + +ES+
Sbjct: 357 ACGGCHMLVFATPRPKESE 375



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 144/320 (45%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE---- 62
           +  +GS   GQLG+           VKAL+  KV     G  ++L   + GK  +     
Sbjct: 58  LYVFGSNNWGQLGLEAGSAISKPTCVKALKSEKVVFASCGRNHTLLYTEQGKLYSSGGNS 117

Query: 63  -----------NIPSQVNALSNT--KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          Q  +  NT  KI Q + G     A+   G+ + WG N  GQ G E
Sbjct: 118 EGQLGLGDTSGRTSFQEISFFNTQYKIKQLSAGSNTSAALTVDGKLFMWGDNSEGQLGLE 177

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
            E    T          PQ+      +  ++ G  HS  +T++G ++T+G+P       P
Sbjct: 178 KEAIYST----------PQKIDIGKPISWISCGYYHSAFVTQDGELYTFGEPENGKLGLP 227

Query: 164 PGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              +K+   P RV GL  +VK+++ G  H +A+ E   ++ +G  ++GQLG G     +Q
Sbjct: 228 SDKLKKHKKPQRVSGLSGKVKIVSCGGEHTIAVTEK-EVYTFGLGQFGQLGHGTFIFETQ 286

Query: 223 -PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V  L+  T++ +  G  H+  +TD G +Y +G G HG+LG G+ + +++ VP   +
Sbjct: 287 LPKAVDVLTKKTILYVTCGENHTAVITDKGLLYTFGDGRHGKLGLGEENFTNQFVPILCS 346

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
                 +  V+CGG H +  
Sbjct: 347 NFLKFTVQSVACGGCHMLVF 366



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 42/225 (18%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           I+ G  H + +  +G L+ +G+N +GQLG       S+P  V+ L    +V  + G  H+
Sbjct: 42  ISCGDEHTVLVTGNGKLYVFGSNNWGQLGLEAGSAISKPTCVKALKSEKVVFASCGRNHT 101

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE-DIVQVSCGGTHSVALTR 303
              T+ G++Y  G    G+LG GD   S +   Q+++    +  I Q+S G   S ALT 
Sbjct: 102 LLYTEQGKLYSSGGNSEGQLGLGDT--SGRTSFQEISFFNTQYKIKQLSAGSNTSAALTV 159

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP------------------------AP 339
           DG +F +G    G+LG  ++     P ++ I  P                         P
Sbjct: 160 DGKLFMWGDNSEGQLGLEKEAIYSTPQKIDIGKPISWISCGYYHSAFVTQDGELYTFGEP 219

Query: 340 RNAGDGVDRRWI---------------AKLVACGGRHTLAIVEWQ 369
            N   G+    +                K+V+CGG HT+A+ E +
Sbjct: 220 ENGKLGLPSDKLKKHKKPQRVSGLSGKVKIVSCGGEHTIAVTEKE 264


>gi|213626735|gb|AAI69997.1| RPGR [Xenopus laevis]
          Length = 727

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 32/319 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL + K+V A+ G  H L   +QG+ Y+ GGN  GQ G      D +GR   ++I
Sbjct: 80  PTCVKALKSEKVVFASCGRNHTLLYTEQGKLYSSGGNSEGQLG----LGDTSGRTSFQEI 135

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQ--ISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG       G  K+   S P ++   +
Sbjct: 136 SF---FNTQYKIKQLSAGSNTSAALTVDGKLFMWGDNSEGQLGLEKEAIYSTPQKIDIGK 192

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG--TGDTQPRSQPIPVQGLSGLTLVDIA 238
            +  I+ G +H+  + +DG L+ +G  E G+LG  +   +   +P  V GLSG   + ++
Sbjct: 193 PISWISCGYYHSAFVTQDGELYTFGEPENGKLGLPSDKLKKHKKPQRVSGLSGKVKI-VS 251

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+ A+T+  EVY +G G+ G+LG G     +++ P+ V++L  + I+ V+CG  H+
Sbjct: 252 CGGEHTIAVTEK-EVYTFGLGQFGQLGHGTFIFETQL-PKAVDVLTKKTILYVTCGENHT 309

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI---NIPAPRNAGDGVDRRWIAKLV 355
             +T  G +++FG G HG+LG G +  T Q   VPI   N             ++  + V
Sbjct: 310 AVITDKGLLYTFGDGRHGKLGLGEENFTNQ--FVPILCSNF-----------LKFTVQSV 356

Query: 356 ACGGRHTLAIVEWQTEESK 374
           ACGG H L     + +ES+
Sbjct: 357 ACGGCHMLVFATPRPKESE 375



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 144/320 (45%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE---- 62
           +  +GS   GQLG+           VKAL+  KV     G  ++L   + GK  +     
Sbjct: 58  LYVFGSNNWGQLGLEAGSAISKPTCVKALKSEKVVFASCGRNHTLLYTEQGKLYSSGGNS 117

Query: 63  -----------NIPSQVNALSNT--KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          Q  +  NT  KI Q + G     A+   G+ + WG N  GQ G E
Sbjct: 118 EGQLGLGDTSGRTSFQEISFFNTQYKIKQLSAGSNTSAALTVDGKLFMWGDNSEGQLGLE 177

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
            E    T          PQ+      +  ++ G  HS  +T++G ++T+G+P       P
Sbjct: 178 KEAIYST----------PQKIDIGKPISWISCGYYHSAFVTQDGELYTFGEPENGKLGLP 227

Query: 164 PGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              +K+   P RV GL  +VK+++ G  H +A+ E   ++ +G  ++GQLG G     +Q
Sbjct: 228 SDKLKKHKKPQRVSGLSGKVKIVSCGGEHTIAVTEK-EVYTFGLGQFGQLGHGTFIFETQ 286

Query: 223 -PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V  L+  T++ +  G  H+  +TD G +Y +G G HG+LG G+ + +++ VP   +
Sbjct: 287 LPKAVDVLTKKTILYVTCGENHTAVITDKGLLYTFGDGRHGKLGLGEENFTNQFVPILCS 346

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
                 +  V+CGG H +  
Sbjct: 347 NFLKFTVQSVACGGCHMLVF 366



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 42/225 (18%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           I+ G  H + +  +G L+ +G+N +GQLG       S+P  V+ L    +V  + G  H+
Sbjct: 42  ISCGDEHTVLVTGNGKLYVFGSNNWGQLGLEAGSAISKPTCVKALKSEKVVFASCGRNHT 101

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE-DIVQVSCGGTHSVALTR 303
              T+ G++Y  G    G+LG GD   S +   Q+++    +  I Q+S G   S ALT 
Sbjct: 102 LLYTEQGKLYSSGGNSEGQLGLGDT--SGRTSFQEISFFNTQYKIKQLSAGSNTSAALTV 159

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP------------------------AP 339
           DG +F +G    G+LG  ++     P ++ I  P                         P
Sbjct: 160 DGKLFMWGDNSEGQLGLEKEAIYSTPQKIDIGKPISWISCGYYHSAFVTQDGELYTFGEP 219

Query: 340 RNAGDGVDRRWI---------------AKLVACGGRHTLAIVEWQ 369
            N   G+    +                K+V+CGG HT+A+ E +
Sbjct: 220 ENGKLGLPSDKLKKHKKPQRVSGLSGKVKIVSCGGEHTIAVTEKE 264


>gi|383319323|ref|YP_005380164.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320693|gb|AFC99645.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 476

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 154/318 (48%), Gaps = 53/318 (16%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           + + A+G +H +A+ D G  +AWG N YG+CGE     DD   IL + ++I         
Sbjct: 31  VKKVAVGLFHTVALADDGTVWAWGSNTYGECGEG--SSDD---ILLKPVMINGLEG---- 81

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV----------PVRVQGLEQVKLI 185
           V+ VA G   S+ L  +G VWTWG         Q+ +          PV+V GL  V  I
Sbjct: 82  VKDVAVGNNFSMALKSDGTVWTWGD----NRYGQLGIGTADDGRHPEPVQVPGLTNVIAI 137

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTG---------------DTQPRSQPIPVQGLS 230
           +      +AL++DG +WAWG+N YGQLG G               D Q +  P+ V GL 
Sbjct: 138 SADFQLAMALKDDGTVWAWGSNSYGQLGDGKPIDIPPPLTYSKEWDMQNKPSPVMVSGLD 197

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +V I A GW + A+ DDG V+GWG+       +  N+++S      V ++   D+ +
Sbjct: 198 --HVVSIDASGWQAFAVKDDGTVWGWGQNTCTLGEWSKNNENSLYTSTPVQIVGLTDVKK 255

Query: 291 VSC-GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV--PINIPAPRNAGDGVD 347
             C GG  +VAL +DG ++++G   +G LG G   +     +V  PI +    +  D   
Sbjct: 256 ACCLGGLSAVALKKDGTVWAWGEDRYGVLGNGEVKSYPDVDKVYNPIQVIGLTDIVD--- 312

Query: 348 RRWIAKLVACGGRHTLAI 365
                  ++CGG H+LA+
Sbjct: 313 -------ISCGGAHSLAL 323



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 170/361 (47%), Gaps = 50/361 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +A   ++ AWGS   G+ G G++++     V +  LE   V+ V  G+  S+A+  DG  
Sbjct: 44  LADDGTVWAWGSNTYGECGEGSSDDILLKPVMINGLE--GVKDVAVGNNFSMALKSDGTV 101

Query: 60  KT------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
            T                     P QV  L+N   + A       +A+ D G  +AWG N
Sbjct: 102 WTWGDNRYGQLGIGTADDGRHPEPVQVPGLTNVIAISADFQ--LAMALKDDGTVWAWGSN 159

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVW 156
            YGQ G+             ++  +  + +P ++     V  + A G  +  +  +G VW
Sbjct: 160 SYGQLGDGKPIDIPPPLTYSKEWDMQNKPSPVMVSGLDHVVSIDASGWQAFAVKDDGTVW 219

Query: 157 TWGQ------PWPPGDIKQI--SVPVRVQGLEQVK-LIAVGAFHNLALQEDGALWAWGNN 207
            WGQ       W   +   +  S PV++ GL  VK    +G    +AL++DG +WAWG +
Sbjct: 220 GWGQNTCTLGEWSKNNENSLYTSTPVQIVGLTDVKKACCLGGLSAVALKKDGTVWAWGED 279

Query: 208 EYGQLGTG------DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            YG LG G      D      PI V GL+   +VDI+ GG HS AL DDG V+ WG+   
Sbjct: 280 RYGVLGNGEVKSYPDVDKVYNPIQVIGLT--DIVDISCGGAHSLALKDDGTVWAWGKNYA 337

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G+LG  D+   S+  P +V + A + I   S G   +VA+ +D +++++G  D+G+LG G
Sbjct: 338 GQLG--DSTNESRGTPCRVPIPAAKAI---SAGYYSNVAIDKDDNVWAWGMDDYGQLGDG 392

Query: 322 R 322
            
Sbjct: 393 E 393



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 138/329 (41%), Gaps = 56/329 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++  WG    GQLGIG  ++      V+      V ++ A  + ++A+ DDG   
Sbjct: 95  LKSDGTVWTWGDNRYGQLGIGTADDGRHPEPVQVPGLTNVIAISADFQLAMALKDDGTVW 154

Query: 60  ----------------------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDD 91
                                         +N PS V       +V     GW   AV D
Sbjct: 155 AWGSNSYGQLGDGKPIDIPPPLTYSKEWDMQNKPSPVMVSGLDHVVSIDASGWQAFAVKD 214

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  + WG N    C      K++   +     V  Q      + +    GG  +V L +
Sbjct: 215 DGTVWGWGQN---TCTLGEWSKNNENSLYTSTPV--QIVGLTDVKKACCLGGLSAVALKK 269

Query: 152 EGHVWTWGQ------------PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG 199
           +G VW WG+             +P  D+ ++  P++V GL  +  I+ G  H+LAL++DG
Sbjct: 270 DGTVWAWGEDRYGVLGNGEVKSYP--DVDKVYNPIQVIGLTDIVDISCGGAHSLALKDDG 327

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQP--IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            +WAWG N  GQLG    + R  P  +P+          I+AG + + A+  D  V+ WG
Sbjct: 328 TVWAWGKNYAGQLGDSTNESRGTPCRVPIPAAKA-----ISAGYYSNVAIDKDDNVWAWG 382

Query: 258 RGEHGRLGFGDN-DKSSKMVPQKVNLLAG 285
             ++G+LG G++ +   +  P+KV L  G
Sbjct: 383 MDDYGQLGDGEHGEMLYRPTPKKVLLSFG 411


>gi|302803630|ref|XP_002983568.1| hypothetical protein SELMODRAFT_118244 [Selaginella moellendorffii]
 gi|300148811|gb|EFJ15469.1| hypothetical protein SELMODRAFT_118244 [Selaginella moellendorffii]
          Length = 413

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 183/407 (44%), Gaps = 73/407 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           +  WG+G+ G+LG+  +  +    + +ALE ++  SV  G  ++L + D G         
Sbjct: 30  VALWGNGDQGRLGLSESGSQFEPVLCRALESHEPCSVSCGGAHTLILTDKGRVFATGLNS 89

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   K+++   P +V+   +   V  A G +H  A+   G  Y WG N  GQ G  
Sbjct: 90  SGQLGVPLKSESSFDPVEVHGFPD-PCVHIAAGRYHSAAITSSGETYVWGRNSEGQLG-- 146

Query: 110 PERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP----WP 163
                  G+  +   + PQ+      + ++ +A G  HS+ L   G V +WG        
Sbjct: 147 ------LGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTNRFGCLG 200

Query: 164 PGDIKQI---------SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
            G++              P  +  LE  QV+ ++ G  H+    + G ++++G     QL
Sbjct: 201 HGEMTGFFDFFKDTNEYTPRIIHCLEKLQVRSVSAGLVHSACADDSGTIYSFGQGSMCQL 260

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G G+    SQP P+  L  ++   I+ GG+H+ A+T DG++Y WG  EHG LG G    S
Sbjct: 261 GLGNNNDASQPCPIPDLPRVS--SISCGGYHTGAITQDGDIYTWGSNEHGCLGSGFRASS 318

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH------------GRLGY 320
               P ++  LA   + ++SCG  H+ A++ DG+IFS+G G              G+LG 
Sbjct: 319 K---PLRLESLAEAFMSEISCGWKHTAAIS-DGYIFSWGWGGSYGTYATQAESSGGQLGV 374

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G      +P  VPI +          D R  A  V+CG  HT AI+E
Sbjct: 375 GTDFDFFEP--VPIEM----------DDRLSALHVSCGFNHTAAILE 409



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 148/337 (43%), Gaps = 47/337 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + A G    GQLG+    E  +  V     P     + AG  +S AI   G+T       
Sbjct: 82  VFATGLNSSGQLGVPLKSESSFDPVEVHGFPDPCVHIAAGRYHSAAITSSGETYVWGRNS 141

Query: 60  ----------KTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     K+  I P ++ +L+  ++   A+G  H L + + G+  +WG N +G  G 
Sbjct: 142 EGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTNRFGCLGH 201

Query: 109 EP-----ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
                  +   DT     R I     C  KL VR V+AG  HS      G ++++GQ   
Sbjct: 202 GEMTGFFDFFKDTNEYTPRII----HCLEKLQVRSVSAGLVHSACADDSGTIYSFGQGSM 257

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G+    S P  +  L +V  I+ G +H  A+ +DG ++ WG+NE+G LG+G  + 
Sbjct: 258 CQLGLGNNNDASQPCPIPDLPRVSSISCGGYHTGAITQDGDIYTWGSNEHGCLGSG-FRA 316

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG------------EHGRLGFG 267
            S+P+ ++ L+   + +I+  GW  TA   DG ++ WG G              G+LG G
Sbjct: 317 SSKPLRLESLAEAFMSEISC-GWKHTAAISDGYIFSWGWGGSYGTYATQAESSGGQLGVG 375

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            +    + VP  + +      + VSCG  H+ A+  +
Sbjct: 376 TDFDFFEPVP--IEMDDRLSALHVSCGFNHTAAILEE 410



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 124/299 (41%), Gaps = 59/299 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDG- 57
           + S+     WG   +GQLG+G   +  ++    +++L   +++++  G+ +SL + + G 
Sbjct: 128 ITSSGETYVWGRNSEGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQ 187

Query: 58  ------------------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
                                   K   E  P  ++ L   ++   + G  H    DD G
Sbjct: 188 VLSWGTNRFGCLGHGEMTGFFDFFKDTNEYTPRIIHCLEKLQVRSVSAGLVHSACADDSG 247

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA-PKLI-VRQVAAGGTHSVVLTR 151
             Y++G     Q G            L  +    Q C  P L  V  ++ GG H+  +T+
Sbjct: 248 TIYSFGQGSMCQLG------------LGNNNDASQPCPIPDLPRVSSISCGGYHTGAITQ 295

Query: 152 EGHVWTWGQP---WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWG- 205
           +G ++TWG           +  S P+R++ L +  +  I+ G  H  A+  DG +++WG 
Sbjct: 296 DGDIYTWGSNEHGCLGSGFRASSKPLRLESLAEAFMSEISCGWKHTAAIS-DGYIFSWGW 354

Query: 206 -----------NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
                       +  GQLG G      +P+P++    L+ + ++ G  H+ A+ ++ E+
Sbjct: 355 GGSYGTYATQAESSGGQLGVGTDFDFFEPVPIEMDDRLSALHVSCGFNHTAAILEEIEI 413


>gi|301115610|ref|XP_002905534.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262110323|gb|EEY68375.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 456

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 178/410 (43%), Gaps = 81/410 (19%)

Query: 2   ASTTSIIAWGSGEDGQLG--------IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI 53
           A+ +S+  WG+G  GQLG        I +  E     + +ALE   +  V  G+ +S AI
Sbjct: 66  ATQSSVYTWGNGTLGQLGHGSVIKSGIRSAYEELTPKLTEALEGKAITHVEFGASHSAAI 125

Query: 54  CDDGK-----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAY 96
            ++GK                 ++ E +P +V AL   KIV  + G +   AVD+ G+ Y
Sbjct: 126 DEEGKLYVWGSNEYSKLGLGESSEMETLPREVEALKGIKIVDVSCGDYFTAAVDEDGKMY 185

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTR 151
           +WG       G   +     G    +D   P R    L+     +  V  G  H+V LT+
Sbjct: 186 SWGWG-----GSTMKGAGGLGHAGGKDEPTP-RLLTTLVDQGVPIATVECGEFHTVALTK 239

Query: 152 EGHVWTWGQPWP------PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
           +G +W WG            D  ++  P+     + V  IA G   + AL + G L++WG
Sbjct: 240 DGEIWAWGNGEYGRLGNGESDTCEVPEPIEFFSKDNVVSIAAGRDFSFALTDKGELYSWG 299

Query: 206 NNEYGQLGTGD------TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            N   QLG G           S P+ V+  +GL +  IAAG  H+ A+T+DG +Y WG  
Sbjct: 300 GNSQNQLGIGGGLAMDVYNIESIPVLVEAFNGLLVKQIAAGYDHAAAVTEDGRLYMWG-- 357

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
                          + P ++  +    + QV+CG  ++V LT DG +F+FG+G    LG
Sbjct: 358 -----------AKIWIEPHEMTAVNEHKMTQVACGRQYTVGLTDDGKVFTFGKGSSNCLG 406

Query: 320 YGRKVTTGQPMEVP----INIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +G +    QP+++     +NI +                V+CG  H  AI
Sbjct: 407 HGDRKNQLQPVKIQALAGVNITS----------------VSCGDYHMGAI 440



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 200 ALWAWGNNEYGQLGTGDT--------QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +++ WGN   GQLG G               P   + L G  +  +  G  HS A+ ++G
Sbjct: 70  SVYTWGNGTLGQLGHGSVIKSGIRSAYEELTPKLTEALEGKAITHVEFGASHSAAIDEEG 129

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           ++Y WG  E+ +LG G++ +   + P++V  L G  IV VSCG   + A+  DG ++S+G
Sbjct: 130 KLYVWGSNEYSKLGLGESSEMETL-PREVEALKGIKIVDVSCGDYFTAAVDEDGKMYSWG 188

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G     G   K   G       + P PR     VD+      V CG  HT+A+ +
Sbjct: 189 WG-----GSTMKGAGGLGHAGGKDEPTPRLLTTLVDQGVPIATVECGEFHTVALTK 239


>gi|159039902|ref|YP_001539155.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918737|gb|ABW00165.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 546

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/396 (31%), Positives = 169/396 (42%), Gaps = 45/396 (11%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVK----------------ALEPYKVRSVVA 45
           A++ +I+AWGS   G+LG G          V                 ++      +V+A
Sbjct: 51  AASDTILAWGSNFFGELGNGTTTNSSTPVDVSLPADTAAVAIAAGDAHSVALTAAGTVLA 110

Query: 46  GSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
              NS     DG       P  V+  +       A G  H +A+   G   AWGGN +GQ
Sbjct: 111 WGDNSHGQLGDGTGADSLTPVGVSLPAGVTASAVAAGRDHSVALTSAGTVLAWGGNSFGQ 170

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPWP- 163
            G+        G ++ R   +     P   V  VAAG THSV LT  G V  WG  P+  
Sbjct: 171 LGD--------GTVVDRSTPVAVALPPSTTVTAVAAGATHSVALTSAGTVLAWGGNPFGQ 222

Query: 164 --PGDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              G +   S PV V       V  +A G  H++AL   G + AWG N +GQLG G    
Sbjct: 223 LGDGTVVDRSTPVAVALPPSTTVTAVAAGGNHSVALTSAGTVLAWGRNFFGQLGDGTVVD 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P  V   +G+T   +AAG  HS ALT  G V  WG    G+LG  D   ++   P  
Sbjct: 283 RSTPTVVSLPAGVTASAVAAGRIHSLALTTAGGVLAWGNNTFGQLG--DGTTTTSSTPVS 340

Query: 280 VNLLAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           V L A   I  +S   + HSVA+T  G   S+GR   G+LG G   T   P++V  ++P 
Sbjct: 341 VTLPAATTITAISARDSQHSVAMTSAGAALSWGRNLRGQLGDGTTTTRSTPVDV--HLP- 397

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
                 GV        +A G  H+LA+    T  + 
Sbjct: 398 -----TGV----TVTAIAAGDDHSLALTAPPTSTTT 424



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 115/271 (42%), Gaps = 31/271 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  +++AWG    GQLG G   +R     V       V +V AG+ +S+A+       
Sbjct: 154 LTSAGTVLAWGGNSFGQLGDGTVVDRSTPVAVALPPSTTVTAVAAGATHSVALTSAGTVL 213

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P  V    +T +   A GG H +A+   G   AWG N +G
Sbjct: 214 AWGGNPFGQLGDGTVVDRSTPVAVALPPSTTVTAVAAGGNHSVALTSAGTVLAWGRNFFG 273

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+        G ++ R           +    VAAG  HS+ LT  G V  WG     
Sbjct: 274 QLGD--------GTVVDRSTPTVVSLPAGVTASAVAAGRIHSLALTTAGGVLAWGNNTFG 325

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAF---HNLALQEDGALWAWGNNEYGQLGTGDT 217
               G     S PV V       + A+ A    H++A+   GA  +WG N  GQLG G T
Sbjct: 326 QLGDGTTTTSSTPVSVTLPAATTITAISARDSQHSVAMTSAGAALSWGRNLRGQLGDGTT 385

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             RS P+ V   +G+T+  IAAG  HS ALT
Sbjct: 386 TTRSTPVDVHLPTGVTVTAIAAGDDHSLALT 416


>gi|47214261|emb|CAG01938.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1055

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 190/435 (43%), Gaps = 83/435 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAICDDGKTKTE- 62
           ++ WG  +DGQLGI    ER  +   +    +    ++  V G ++S+ +  DG   T  
Sbjct: 1   MLCWGKAKDGQLGI--EVERNSMFEPRNCNVFSGRGLKEAVCGGQHSVFLLHDGSVYTCG 58

Query: 63  -------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P  V AL   +I   + G  H +AV++QG+ +AWG  + GQ G  
Sbjct: 59  SNGCGQLGHNKPGTSPELVGALDTQRITLVSCGQAHSMAVNEQGQVFAWGAGDGGQLG-- 116

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------ 163
                 T   +R   +I + C  +  + QV  G  H + L+++G ++TWGQ         
Sbjct: 117 ---LGTTEAAVRIPRLIKRLCDHR--IAQVMCGNQHCIALSKDGQLFTWGQNTSGQLGLG 171

Query: 164 PGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            G+  ++  P  ++ L  + L  I  G  H+ AL   GA++ WG N+ GQLG  D Q R+
Sbjct: 172 KGEPSKL-FPQPLKSLAGIPLAKITAGGDHSFALSLSGAVFGWGKNKAGQLGLNDIQDRA 230

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALT--------------------------------- 248
            P  ++ L    +V I+ G  H+ ALT                                 
Sbjct: 231 VPCHIKFLRSQKVVHISCGDEHTAALTKVRIRSASQCFRTSGGRCSNPFFCQRIGCSHST 290

Query: 249 ---------DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
                     DG ++ +G G  G+LG G    S++++P++V  L G ++ Q++CG  H++
Sbjct: 291 RVTILLWLFQDGGLFTFGDGSWGQLGHGST--SNELLPRRVLELMGTEVSQITCGRHHTL 348

Query: 300 ALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           A     G +++FG   HG+LG G          V IN+ +  N      +  + K + CG
Sbjct: 349 AFAPSSGVVYAFGGNSHGQLGTGELSAEKCLYPVKINLLSGNNHRTDSKKYSVTK-ITCG 407

Query: 359 GRHTLAIVEWQTEES 373
           G H+  +  +  E+S
Sbjct: 408 GDHSFLL--YSNEQS 420


>gi|337749002|ref|YP_004643164.1| hypothetical protein KNP414_04764 [Paenibacillus mucilaginosus
           KNP414]
 gi|336300191|gb|AEI43294.1| hypothetical protein KNP414_04764 [Paenibacillus mucilaginosus
           KNP414]
          Length = 388

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 129/252 (51%), Gaps = 20/252 (7%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S T +  AA G  H L +   G  +AWG N   Q G+        G    R   IP +  
Sbjct: 28  SKTPVEAAAGGTGHSLFLQKDGTVWAWGANSNAQLGD--------GTKTDRYSPIPVKNL 79

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV 187
             +I   ++AGG  S  +  +G  W WG         G       PV+VQGL  V  +  
Sbjct: 80  DSVI--GISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTTYDRLTPVQVQGLHSVVALEA 137

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G+ H+LA++ DG++WAWG N YGQLG G T  RS P+ VQ L   ++V +AAG  HS A+
Sbjct: 138 GSSHSLAVKADGSVWAWGWNTYGQLGDGTTDSRSTPVQVQALD--SVVAVAAGSGHSLAV 195

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V+ WG    G+LG G   +S+  VP +V  L    +V VS G T S AL  DG +
Sbjct: 196 KADGSVWAWGANWSGQLGDGTYTEST--VPVQVTGLG--SVVSVSAGNTFSSALKSDGTV 251

Query: 308 FSFGRGDHGRLG 319
           +++G  D G+LG
Sbjct: 252 WAWGANDSGQLG 263



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 154/333 (46%), Gaps = 39/333 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG+  + QLG G   +R     VK L+   V  + AG   S A+            
Sbjct: 50  TVWAWGANSNAQLGDGTKTDRYSPIPVKNLD--SVIGISAGGAASFAVRSDGTAWAWGSN 107

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P QV  L +   ++A  G  H LAV   G  +AWG N YGQ G+ 
Sbjct: 108 LFGQLGDGTTYDRLTPVQVQGLHSVVALEA--GSSHSLAVKADGSVWAWGWNTYGQLGDG 165

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                 T          P +      V  VAAG  HS+ +  +G VW WG  W      G
Sbjct: 166 TTDSRST----------PVQVQALDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDG 215

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
              + +VPV+V GL  V  ++ G   + AL+ DG +WAWG N+ GQLG+ +T   + P P
Sbjct: 216 TYTESTVPVQVTGLGSVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGS-ETAASNSPSP 274

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           VQ     +   I++G  +S AL +DG V+ WG    G+LG G    SS   P +V  L  
Sbjct: 275 VQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSS--APVQVTRLG- 331

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
             +V V+ G  H +A+   G ++ +G   +G+L
Sbjct: 332 -SVVSVAAGPLHGLAVQSGGTVWDWGNNTYGQL 363



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 143/290 (49%), Gaps = 25/290 (8%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NS A   DG       P  V  L +  ++  + GG    AV   G A+AWG N +GQ G+
Sbjct: 57  NSNAQLGDGTKTDRYSPIPVKNLDS--VIGISAGGAASFAVRSDGTAWAWGSNLFGQLGD 114

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                         D + P +      V  + AG +HS+ +  +G VW WG  W      
Sbjct: 115 GTTY----------DRLTPVQVQGLHSVVALEAGSSHSLAVKADGSVWAWG--WNTYGQL 162

Query: 165 --GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G     S PV+VQ L+ V  +A G+ H+LA++ DG++WAWG N  GQLG G     + 
Sbjct: 163 GDGTTDSRSTPVQVQALDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTV 222

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V GL   ++V ++AG   S+AL  DG V+ WG  + G+LG   ++ ++   P  V +
Sbjct: 223 PVQVTGLG--SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLG---SETAASNSPSPVQV 277

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                   +S G  +S+AL  DG ++++G    G+LG G   ++  P++V
Sbjct: 278 TGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQV 327


>gi|221108961|ref|XP_002157481.1| PREDICTED: regulator of chromosome condensation-like [Hydra
           magnipapillata]
          Length = 441

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 187/413 (45%), Gaps = 59/413 (14%)

Query: 7   IIAWGSGEDGQLGIGNNE-EREWVCVVKALEPYKVRSVVAGSRNSLAI----------CD 55
           I+  G G+ GQLG+G N  ER+   ++K +E      V  G  +++ +          C+
Sbjct: 40  ILTLGQGDVGQLGLGENVLERKRPAMIKEVEGVNFIQVTCGGMHTIGVSEHGEVYSWGCN 99

Query: 56  D---------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYG 104
           D         G    E IP +V      ++V A+ G  H  A+ D GR +AWG   +  G
Sbjct: 100 DDGALGRPTEGTDGEEFIPRKVLLPQGIRVVYASAGDSHSAALTDDGRVFAWGAYRDASG 159

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT--WGQPW 162
           Q G           +++   + P+         +V +G  H+V+LT EG ++T   G+  
Sbjct: 160 QIGLTAASIGKKNEVIK---IYPKGDQIDDPAVKVVSGNDHTVILTSEGLIYTSGTGEQG 216

Query: 163 PPGDIKQ-------------ISVP--VRVQGLEQVKLIAVGAFHNLALQED-GALWAWGN 206
             G IK+             I  P  VR +  +    I  G+F   AL  D   ++AWG 
Sbjct: 217 QLGRIKECFGHRGGRRGLEIILSPQVVRFRKKQFFSDIFAGSFCTFALSRDTNDVYAWGL 276

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLT-----LVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           N YGQLG+G T+    P  +Q LS +       + I  G  HS     +G+ Y  GR E+
Sbjct: 277 NNYGQLGSGTTENFFNPEVIQSLSEIREHANGYLQIHGGQHHSIVADGNGKTYSIGRSEY 336

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           GRLG G + K + + P+K++ L  E++V+++CG   S A+T  GH++S+G G   +LG G
Sbjct: 337 GRLGLGKDAKETSL-PKKIDSLEKENVVKIACGEAVSFAVTDKGHLYSWGLGTSLQLGVG 395

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
                  P  V  N     N     D       V+ GG+HT  +V  +  ESK
Sbjct: 396 DDEDIFDPSLVQSN-----NLTLAQDE---VLAVSAGGQHTAILV--RKRESK 438



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 11/176 (6%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           +Q+ G +   G  + GQLG G+    R +P  ++ + G+  + +  GG H+  +++ GEV
Sbjct: 34  VQKVGHILTLGQGDVGQLGLGENVLERKRPAMIKEVEGVNFIQVTCGGMHTIGVSEHGEV 93

Query: 254 YGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG- 311
           Y WG  + G LG   +     + +P+KV L  G  +V  S G +HS ALT DG +F++G 
Sbjct: 94  YSWGCNDDGALGRPTEGTDGEEFIPRKVLLPQGIRVVYASAGDSHSAALTDDGRVFAWGA 153

Query: 312 -RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            R   G++G     + G+  EV    P     GD +D   +   V  G  HT+ + 
Sbjct: 154 YRDASGQIGL-TAASIGKKNEVIKIYP----KGDQIDDPAVK--VVSGNDHTVILT 202



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 28/172 (16%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS-----VVAGSRNSLAICDDGK 58
           T  + AWG    GQLG G  E      V+++L   +  +     +  G  +S+    +GK
Sbjct: 268 TNDVYAWGLNNYGQLGSGTTENFFNPEVIQSLSEIREHANGYLQIHGGQHHSIVADGNGK 327

Query: 59  T-----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           T                 K  ++P ++++L    +V+ A G     AV D+G  Y+WG  
Sbjct: 328 TYSIGRSEYGRLGLGKDAKETSLPKKIDSLEKENVVKIACGEAVSFAVTDKGHLYSWGLG 387

Query: 102 EYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
              Q G  + E   D   +   ++ + Q       V  V+AGG H+ +L R+
Sbjct: 388 TSLQLGVGDDEDIFDPSLVQSNNLTLAQDE-----VLAVSAGGQHTAILVRK 434


>gi|391344583|ref|XP_003746575.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like
           [Metaseiulus occidentalis]
          Length = 1152

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 110/392 (28%), Positives = 170/392 (43%), Gaps = 82/392 (20%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKA------LEPYKVRSVVAGSRNSLAICDDGKT-- 59
           + +G+   G+LG+G  E+     +V+       LE  +VR +  G+ ++L +   G+   
Sbjct: 19  LGFGNTNSGELGLGGIEDH----IVRVPRSIPQLEGIRVRQIATGAHHTLVLTSHGRVLS 74

Query: 60  ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                        +   P  V AL   +IVQ   G  H +A+ + G+ Y WG N  GQ G
Sbjct: 75  CGSNDHDQLGQEVSTTKPEPVTALQCLRIVQVCCGQQHSMALTEAGQVYMWGSNSKGQLG 134

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                 +  G+  R      +  AP  +V Q+A G  H + L   G ++ WG        
Sbjct: 135 ------NGEGQESRLSPRFVKTLAPFTVV-QIACGSNHCLALLNNGALYAWGDNGNGQLG 187

Query: 164 PGDIKQIS-VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            G + +   VPV V  L  + L  IA GA H++ L + G ++ WG+N +GQLG  D + R
Sbjct: 188 IGTVGEPQRVPVEVTNLLGLPLSQIACGANHSMVLSKSGVIFVWGSNRFGQLGLSDNKDR 247

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV--YGW---------------------- 256
           + P  ++ L    +  IAAGG HS ALT  G V  +GW                      
Sbjct: 248 AFPTLLKTLRQQHVKFIAAGGAHSAALTAHGGVFTFGWSFYESHEVRISLRGTESNPQSA 307

Query: 257 ----------------GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
                             G +G+LG G   K+ ++ P K+  L G  I Q++ G  H+V 
Sbjct: 308 LARKLFSLIEREFCRHSYGSYGQLGHG--SKNDQLTPMKIQELMGTTITQIALGRCHTVC 365

Query: 301 LTRD-GHIFSFGRGDHGRLGYG-RKVTTGQPM 330
                G +F+FG G +G+LG     V+T  P+
Sbjct: 366 YAPTVGKVFTFGLGGNGQLGSSVSMVSTPTPL 397



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 47/291 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +     +  WGS   GQLG G  +E R     VK L P+ V  +  GS + LA+ ++G  
Sbjct: 116 LTEAGQVYMWGSNSKGQLGNGEGQESRLSPRFVKTLAPFTVVQIACGSNHCLALLNNGAL 175

Query: 60  -----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            + + +P +V  L    + Q A G  H + +   G  + WG N 
Sbjct: 176 YAWGDNGNGQLGIGTVGEPQRVPVEVTNLLGLPLSQIACGANHSMVLSKSGVIFVWGSNR 235

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHV 155
           +GQ G   + KD              R  P L+       V+ +AAGG HS  LT  G V
Sbjct: 236 FGQLGLS-DNKD--------------RAFPTLLKTLRQQHVKFIAAGGAHSAALTAHGGV 280

Query: 156 WTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
           +T+G  W   +  ++ + +R  G E     A+       ++ +    ++G+  YGQLG G
Sbjct: 281 FTFG--WSFYESHEVRISLR--GTESNPQSALARKLFSLIEREFCRHSYGS--YGQLGHG 334

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHGRLG 265
               +  P+ +Q L G T+  IA G  H+       G+V+ +G G +G+LG
Sbjct: 335 SKNDQLTPMKIQELMGTTITQIALGRCHTVCYAPTVGKVFTFGLGGNGQLG 385


>gi|403332050|gb|EJY65013.1| hypothetical protein OXYTRI_14837 [Oxytricha trifallax]
 gi|403356523|gb|EJY77858.1| hypothetical protein OXYTRI_00501 [Oxytricha trifallax]
          Length = 489

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 162/352 (46%), Gaps = 43/352 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++WG+G++GQLG GN      +   V+ L    +  V A    S A+   G+  T    
Sbjct: 99  LLSWGNGQNGQLGNGNETLSLSIPSPVQVLSDEDIIQVNASGDISAAVTSQGQIYTWGKT 158

Query: 62  --------ENIPSQVNALSNTKIV-------QAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                   +++    N L  T IV       Q A G  H   V   G+   WG  + G+ 
Sbjct: 159 RGGSLSQQKSLSRATNLLLPTLIVAPEVQFVQVACGKTHLAGVTKDGKLITWGNPDQGKL 218

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLI--------VRQVAAGGTHSVVLTREGHVWTW 158
           G   + + ++              A   +        + Q + G  H+  LT++G V+TW
Sbjct: 219 GHNAQLQQESKNKSYSPRSYADYNAINFVGGALESKKIIQASCGFQHTACLTQDGEVYTW 278

Query: 159 GQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           G         G+  Q+ +P +V+GL  +  I  G  +  AL +DG +++WG+N YGQLGT
Sbjct: 279 GFGKNGALGHGNWDQVDLPKKVEGLSNIVKIDCGMDYTFALDKDGNIYSWGSNRYGQLGT 338

Query: 215 GDTQPRSQPIPVQ-----GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +      +P+Q     G S   +VDI+ G  HS  L D GE + WG G  G+L  G  
Sbjct: 339 TQSNINKHNVPIQLQLPHGSS--HVVDISCGEEHSAFLNDKGEAFIWGYGNDGQL--GHK 394

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           +K++   P+K+     E + +V CGG H+  +T  G +F FGRG  G+LG G
Sbjct: 395 EKTNLNQPKKLEFT--EPLRRVVCGGGHTGVITTAGKLFLFGRGRDGQLGRG 444



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 10/115 (8%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +  WG G++G+LG G N+  S  +P  V +L+ EDI+QV+  G  S A+T  G I+++G+
Sbjct: 99  LLSWGNGQNGQLGNG-NETLSLSIPSPVQVLSDEDIIQVNASGDISAAVTSQGQIYTWGK 157

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              G L   + ++    + +P  I AP       + +++   VACG  H   + +
Sbjct: 158 TRGGSLSQQKSLSRATNLLLPTLIVAP-------EVQFVQ--VACGKTHLAGVTK 203


>gi|452822986|gb|EME30000.1| E3 ubiquitin-protein ligase HERC1 [Galdieria sulphuraria]
          Length = 456

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 172/361 (47%), Gaps = 39/361 (10%)

Query: 3   STTSIIAWGSGEDGQLGI-GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK--- 58
           +++++  WG  ++ +LG  G  ++     ++K  E   ++ V  G  ++L + +DG    
Sbjct: 8   ASSALYTWGRAKNYRLGRRGTRDDSCQPELIKVFENCAIQQVACGGGHTLVLLEDGCLHS 67

Query: 59  ------------TKTE---NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                       TK +   +    +++LSN K++  A G +H  A+D  G  + WGG + 
Sbjct: 68  FGYNQYGQLGNGTKVDSPLDASRDISSLSN-KLIAVACGRYHSAALDVNGTVFTWGGGKN 126

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG-HVWTWGQ-- 160
           G+ G   E+             IP R        ++  G   +  +T +G + W WG+  
Sbjct: 127 GRLGHNDEQTR----------TIPCRITHLPRAHKIFCGYHITAAITDDGLYTWGWGEHG 176

Query: 161 PWPPGDIKQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD- 216
               G ++    P +V        +  +A G  H L   E G ++ WG+NE+GQLG G  
Sbjct: 177 QLGQGSLEDSYGPKKVIFDDANLAISQLACGDRHCLVRTESGDVYTWGSNEFGQLGIGRY 236

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +  S P+ +  L+G+ +  +AAG  HS A+T+ G ++ WG G  G+ G GD +     +
Sbjct: 237 NEIYSSPVLLTSLAGMMVTFVAAGDRHSAAVTNTGSLFTWGCGAEGQCGHGDYNDCD--M 294

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P  V  L G  I++V CG   +VAL++D  I+ FG   +G+LG G K +   P ++  +I
Sbjct: 295 PFLVESLVGVFILKVFCGHNFTVALSKDNDIYVFGNNSYGQLGDGSKSSCCTPRKLFFSI 354

Query: 337 P 337
           P
Sbjct: 355 P 355


>gi|296196030|ref|XP_002745681.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Callithrix
           jacchus]
          Length = 1006

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 38/305 (12%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE--PERKDDTGRILRRDIVIPQRCAP 132
           +++QAA G  H L +      ++ G N  GQ G    P          R D+  P +   
Sbjct: 24  ELLQAASGERHALLLLTNSSVHSCGENSRGQLGRRGAP----------RGDLPEPVQALK 73

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQVKLIAV 187
            L    V+ G  HS+ +  +G V+ WG         G+ K+I+  P ++  L  +K+I V
Sbjct: 74  TLKFNLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKEINFTPKKITTLTGIKIIQV 133

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
             G +H+LAL +D  +++WG N +GQLG G +   ++ P  V+ L G+ +  +AAGG HS
Sbjct: 134 SCGHYHSLALSKDSQVFSWGKNSHGQLGLGKELSSQASPQRVRSLEGIPVAQVAAGGAHS 193

Query: 245 TALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
            AL+  G  +GWG    G+L   G N +     P  +  L    ++ +SCG  H+  L++
Sbjct: 194 FALSLCGTSFGWGSNSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLSQ 253

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLVACGGRH 361
           DG +F+FG    G+LGY                P P+  G  +  R   +   + CGG H
Sbjct: 254 DGKVFTFGDNSSGQLGYN---------------PTPKKRGPQIVERIDGLVSQIDCGGDH 298

Query: 362 TLAIV 366
           T+A V
Sbjct: 299 TIAYV 303



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 138/330 (41%), Gaps = 60/330 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + + +S+ + G    GQLG       +    V+AL+  K   V  G  +SLA+C  G+  
Sbjct: 38  LLTNSSVHSCGENSRGQLGRRGAPRGDLPEPVQALKTLKFNLVSCGKEHSLAVCHKGRVF 97

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P ++  L+  KI+Q + G +H LA+    + ++WG N +
Sbjct: 98  AWGAGSEGQLGIGEFKEINFTPKKITTLTGIKIIQVSCGHYHSLALSKDSQVFSWGKNSH 157

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G   E               PQR      + V QVAAGG HS  L+  G  + WG  
Sbjct: 158 GQLGLGKELSSQAS---------PQRVRSLEGIPVAQVAAGGAHSFALSLCGTSFGWGS- 207

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL-------------ALQEDGALWAWGNNE 208
                  Q+++  R   ++  K +++GA  NL              L +DG ++ +G+N 
Sbjct: 208 ---NSAGQLALSGRNVQVQSNKPLSIGALKNLGVIYISCGDEHTAVLSQDGKVFTFGDNS 264

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            GQLG   T  +  P  V+ + GL +  I  GG H+ A       Y    G+    G G 
Sbjct: 265 SGQLGYNPTPKKRGPQIVERIDGL-VSQIDCGGDHTIA-------YVHTTGQVVSFGHGP 316

Query: 269 NDKSSKMVPQKVN-------LLAGEDIVQV 291
           +D S    P+ +        L++ +D+V V
Sbjct: 317 SDTSKPTHPEALKENFDIRCLISADDLVDV 346


>gi|255539128|ref|XP_002510629.1| guanine nucleotide exchange factor P532, putative [Ricinus
           communis]
 gi|223551330|gb|EEF52816.1| guanine nucleotide exchange factor P532, putative [Ricinus
           communis]
          Length = 450

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 183/427 (42%), Gaps = 91/427 (21%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN 63
           T  +++WG G  GQLG G  E R +   V  L        ++ +   L I +   T T+ 
Sbjct: 46  TLQLLSWGRGSSGQLGGGIEETRLYPSPVANLHALPSSFSLSPTPGQLLIKNQNSTITKQ 105

Query: 64  ------------------------------------------IPSQVNALSNTKIVQAAI 81
                                                     +P+    L   K V  A+
Sbjct: 106 EAIEVGISCGLFHSALLVDGNIWIWGKGDGGRLGFGHENPVFVPTLNPNLDPAKCV--AL 163

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------ 135
           GG H +A+   G+ + WG   +G  G           +  R+++      P+L+      
Sbjct: 164 GGVHSVALTSLGQVFTWGYGGFGALGH---------CVYHRELL------PRLVQGISNE 208

Query: 136 -VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-------------ISVPVRVQGLE- 180
            +R +A  GTH+  +T  G V+TWG+    GD +              +S+P +V+ L  
Sbjct: 209 KIRHIATSGTHTAAITETGEVYTWGRD--EGDGRLGLGPGRGPNEGGGLSIPSKVKALTV 266

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            V  +  G F    L E+G +W WG N   +LG G+     QP P+  L G+ ++ IA+G
Sbjct: 267 PVAAVFCGGFFTAVLTEEGQIWNWGANSNYELGRGNKTGGWQPKPIPNLEGVRVIQIASG 326

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
           G+HS ALTD+G+V  WG G HG+L  G     ++ +P  ++ LA + +V ++CGG+ S A
Sbjct: 327 GYHSLALTDEGKVLSWGFGGHGQL--GHPSIQNQKIPMVIDALADQRVVYIACGGSTSAA 384

Query: 301 LTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           +T +G ++ +G     +LG  G       P+EV   +       DG+    +   VA G 
Sbjct: 385 ITDEGKLYMWGNAKDSQLGVPGLPEVQPCPVEVVFLM-----EDDGLGPHKVLS-VAVGA 438

Query: 360 RHTLAIV 366
            H + +V
Sbjct: 439 SHAMCLV 445



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 84/198 (42%), Gaps = 52/198 (26%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---------------------------T 233
           L +WG    GQLG G  + R  P PV  L  L                            
Sbjct: 49  LLSWGRGSSGQLGGGIEETRLYPSPVANLHALPSSFSLSPTPGQLLIKNQNSTITKQEAI 108

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ-KVNLLAGEDIVQVS 292
            V I+ G +HS AL  DG ++ WG+G+ GRLGFG  +     VP    NL   +    V+
Sbjct: 109 EVGISCGLFHS-ALLVDGNIWIWGKGDGGRLGFGHENPV--FVPTLNPNL---DPAKCVA 162

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLG---YGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            GG HSVALT  G +F++G G  G LG   Y R++              PR    G+   
Sbjct: 163 LGGVHSVALTSLGQVFTWGYGGFGALGHCVYHRELL-------------PRLV-QGISNE 208

Query: 350 WIAKLVACGGRHTLAIVE 367
            I + +A  G HT AI E
Sbjct: 209 KI-RHIATSGTHTAAITE 225


>gi|113205520|ref|NP_001037872.1| retinitis pigmentosa GTPase regulator [Xenopus (Silurana)
           tropicalis]
 gi|77808103|gb|ABB03733.1| RPGR 1-19 isoform [Xenopus (Silurana) tropicalis]
          Length = 729

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 36/321 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL + K+V AA G  H L   +QG+ Y+ GGN  GQ G      D  GR   ++I
Sbjct: 80  PTCVKALKSEKVVLAACGRHHTLVYTEQGKLYSSGGNSEGQLG----LGDTAGRTSFQEI 135

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQG 178
                   +  ++Q++AG   S  LT +G ++ WG           G I     P +V  
Sbjct: 136 SF---FTAQYKIKQLSAGSNMSAALTVDGKLFMWGDNSEGQLGLEKGTI--YCTPQKVDT 190

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT--GDTQPRSQPIPVQGLSGLTLVD 236
            + +  I+ G +H+  + +DG L+ +G  E G+LG      +   +P  V GLSG   + 
Sbjct: 191 GKPIAWISCGYYHSAFVTQDGELYTFGEPENGKLGLPPDKIKKHKKPQRVLGLSGKVTM- 249

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           ++ GG H+ A+T+  EVY +G G+ G+LG G     +  +P+ V+ L  + I  V+CG  
Sbjct: 250 VSCGGEHTIAVTEK-EVYTFGLGQFGQLGHGTFIFET-HIPKAVDALTKKKIRYVTCGEN 307

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI---NIPAPRNAGDGVDRRWIAK 353
           H+  +T  G +++FG G HG+LG G +  T Q   VPI   N             ++  +
Sbjct: 308 HTAIITEKGLLYTFGDGRHGKLGLGEENFTNQF--VPILCSNF-----------LKFTVQ 354

Query: 354 LVACGGRHTLAIVEWQTEESK 374
            VACGG H L     + +ES+
Sbjct: 355 SVACGGCHMLVFATPRPQESE 375



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 158/327 (48%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  ENIPS+   L N K  + + G  H + V   G+ Y +G N +GQ G E 
Sbjct: 15  ALFTFGKSKFAENIPSKF-WLKNDKPARISCGDEHTVLVTGNGKLYVFGSNNWGQLGVE- 72

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT----------WGQ 160
                 G  + +   +    + K+++   A G  H++V T +G +++           G 
Sbjct: 73  -----AGSAISKPTCVKALKSEKVVL--AACGRHHTLVYTEQGKLYSSGGNSEGQLGLGD 125

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                  ++IS         ++K ++ G+  + AL  DG L+ WG+N  GQLG       
Sbjct: 126 TAGRTSFQEISF---FTAQYKIKQLSAGSNMSAALTVDGKLFMWGDNSEGQLGLEKGTIY 182

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  V   +G  +  I+ G +HS  +T DGE+Y +G  E+G+LG   +       PQ+V
Sbjct: 183 CTPQKVD--TGKPIAWISCGYYHSAFVTQDGELYTFGEPENGKLGLPPDKIKKHKKPQRV 240

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L+G+ +  VSCGG H++A+T +  +++FG G  G+LG+G  +          +IP   
Sbjct: 241 LGLSGK-VTMVSCGGEHTIAVT-EKEVYTFGLGQFGQLGHGTFI-------FETHIPK-- 289

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
            A D + ++ I + V CG  HT  I E
Sbjct: 290 -AVDALTKKKI-RYVTCGENHTAIITE 314



 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           D G ++ +G+ +     F +N      +P K   L  +   ++SCG  H+V +T +G ++
Sbjct: 12  DSGALFTFGKSK-----FAEN------IPSKF-WLKNDKPARISCGDEHTVLVTGNGKLY 59

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            FG  + G+LG    V  G  +  P  + A ++            L ACG  HTL   E
Sbjct: 60  VFGSNNWGQLG----VEAGSAISKPTCVKALKSEK--------VVLAACGRHHTLVYTE 106


>gi|291221016|ref|XP_002730519.1| PREDICTED: predicted protein-like, partial [Saccoglossus
           kowalevskii]
          Length = 353

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 162/325 (49%), Gaps = 35/325 (10%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--- 107
           AI   GK++  +N+PS+   + N K +  + G  H   + + GR Y +G N++GQ G   
Sbjct: 14  AIFTFGKSRFADNLPSKF-WIRNDKAMHISCGDEHSAIITESGRLYTFGSNDWGQLGLGH 72

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
            +P  K    + L+++ V             VA G +H++V T+ G ++++G        
Sbjct: 73  MKPTTKPGCVKSLKQEGV-----------NLVACGRSHTIVCTKAGRLYSFGAGSDGQLG 121

Query: 164 PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            GD +  + P  +   EQ  KL++ G  H+ AL  DG L+ WG+   GQLG G+T     
Sbjct: 122 TGDAQCATSPQLINLPEQKYKLLSAGTDHSAALTTDGTLYMWGSGSEGQLGLGNTDSVET 181

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  ++  S ++ V  + G +H+  +TDDG++Y +G  E G+LG  ++       P+ V  
Sbjct: 182 PKELKFHSSVSWV--SCGYYHTAIVTDDGKLYTFGEKEFGKLGLTEDQLEDTTTPKHVES 239

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           +  E I  V+CGG H+  ++  G++++FG G HG+LG G  +         + +  P+  
Sbjct: 240 IT-EKIKLVACGGAHTAVISDVGNLYTFGDGMHGQLGNGPSL---------LQLSLPQKV 289

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
               + +   K V+CG  HT  I E
Sbjct: 290 ARLSEHK--CKYVSCGDNHTAVITE 312



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 37/307 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           +  +GS + GQLG+G+ +       VK+L+   V  V  G R+   +C            
Sbjct: 57  LYTFGSNDWGQLGLGHMKPTTKPGCVKSLKQEGVNLVACG-RSHTIVCTKAGRLYSFGAG 115

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G  +    P  +N L   K    + G  H  A+   G  Y WG    GQ G  
Sbjct: 116 SDGQLGTGDAQCATSPQLIN-LPEQKYKLLSAGTDHSAALTTDGTLYMWGSGSEGQLGLG 174

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
                +T          P+       V  V+ G  H+ ++T +G ++T+G+         
Sbjct: 175 NTDSVET----------PKELKFHSSVSWVSCGYYHTAIVTDDGKLYTFGEKEFGKLGLT 224

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-S 221
              ++  + P  V+ + E++KL+A G  H   + + G L+ +G+  +GQLG G +  + S
Sbjct: 225 EDQLEDTTTPKHVESITEKIKLVACGGAHTAVISDVGNLYTFGDGMHGQLGNGPSLLQLS 284

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  V  LS      ++ G  H+  +T+ G +Y +G G HG+LG  + D  +   P KV+
Sbjct: 285 LPQKVARLSEHKCKYVSCGDNHTAVITEKGAMYTFGDGRHGKLGISEEDFCNIFKPCKVS 344

Query: 282 LLAGEDI 288
                D+
Sbjct: 345 RFTSFDV 351



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 52/215 (24%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++  WGSG +GQLG+GN +  E                                     P
Sbjct: 159 TLYMWGSGSEGQLGLGNTDSVE------------------------------------TP 182

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            ++   S+   V  + G +H   V D G+ Y +G  E+G+ G   ++ +DT      + +
Sbjct: 183 KELKFHSSVSWV--SCGYYHTAIVTDDGKLYTFGEKEFGKLGLTEDQLEDTTTPKHVESI 240

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLE 180
             +       ++ VA GG H+ V++  G+++T+     GQ      + Q+S+P +V  L 
Sbjct: 241 TEK-------IKLVACGGAHTAVISDVGNLYTFGDGMHGQLGNGPSLLQLSLPQKVARLS 293

Query: 181 Q--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           +   K ++ G  H   + E GA++ +G+  +G+LG
Sbjct: 294 EHKCKYVSCGDNHTAVITEKGAMYTFGDGRHGKLG 328


>gi|307193259|gb|EFN76150.1| Probable E3 ubiquitin-protein ligase HERC4 [Harpegnathos saltator]
          Length = 1054

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 184/395 (46%), Gaps = 47/395 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           +  WGS   G+LG+G  E+        V   +  ++  +  G   ++A+  +G+      
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFTPREVNFEKANEIEQIACGDNYTIAVTKEGQVYSCGN 60

Query: 60  ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       K   + S ++ L+  K   AA G  H L V++ G+ ++WG N  GQ G
Sbjct: 61  NDHGQLGQEKGRKRLQLISGIDPLAFRK---AACGSSHTLVVNEWGQLFSWGSNVEGQLG 117

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPW 162
                 D     +R   ++ +    K+IV Q+A G  HS+ LT  G ++ WG     Q  
Sbjct: 118 -----LDRVSATIREPRMV-KTLGTKIIV-QIACGLKHSIALTNNGELYAWGSNSDGQLG 170

Query: 163 PPGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              D K    P  V  L  V    +A G +H + + + GA++AWG N +GQLG  D Q R
Sbjct: 171 LGSDTKMELKPKLVHSLAAVPIAFVACGGYHTIVISKSGAVFAWGRNTFGQLGLSDIQNR 230

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P  ++ L    +   A G   S  LT DG V+  G G +G+LG G  +K+S+++P+++
Sbjct: 231 NVPCQLRTLRNSRVCYAACGEEFSVFLTMDGGVFTCGAGMYGQLGHG--NKTSEILPRQI 288

Query: 281 NLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG--YGRKVTTGQPMEVPINIP 337
             L G  + Q+SCG  H++AL    G ++++G G  G+LG    +  TT Q +  P   P
Sbjct: 289 MELMGSTVTQISCGRRHTLALVPSRGRVYAWGLGGAGQLGNRIAQNSTTPQVVFGPWVSP 348

Query: 338 APRNA--GDGVDR----RWIAKLVACGGRHTLAIV 366
           +  +    D  D       + K +  GG H  AIV
Sbjct: 349 SGSSMINHDSHDSPKPTDCVVKHIFSGGDHCFAIV 383



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 14/116 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WG   HG LG G  +  +   P++VN     +I Q++CG  +++A+T++G ++S G 
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFTPREVNFEKANEIEQIACGDNYTIAVTKEGQVYSCGN 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            DHG+LG  +     Q +              G+D     K  ACG  HTL + EW
Sbjct: 61  NDHGQLGQEKGRKRLQLI-------------SGIDPLAFRK-AACGSSHTLVVNEW 102



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 31/186 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++ AWG    GQLG+ + + R   C ++ L   +V     G   S+ +  DG   
Sbjct: 205 ISKSGAVFAWGRNTFGQLGLSDIQNRNVPCQLRTLRNSRVCYAACGEEFSVFLTMDGGVF 264

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E +P Q+  L  + + Q + G  H LA V  +GR YAWG    
Sbjct: 265 TCGAGMYGQLGHGNKTSEILPRQIMELMGSTVTQISCGRRHTLALVPSRGRVYAWGLGGA 324

Query: 104 GQCGEEPERKDDTGRILRRDIVIP---------QRCAPK---LIVRQVAAGGTH--SVVL 149
           GQ G    +   T +++    V P            +PK    +V+ + +GG H  ++V 
Sbjct: 325 GQLGNRIAQNSTTPQVVFGPWVSPSGSSMINHDSHDSPKPTDCVVKHIFSGGDHCFAIVT 384

Query: 150 TREGHV 155
            RE ++
Sbjct: 385 LREDNI 390


>gi|302784100|ref|XP_002973822.1| hypothetical protein SELMODRAFT_100519 [Selaginella moellendorffii]
 gi|300158154|gb|EFJ24777.1| hypothetical protein SELMODRAFT_100519 [Selaginella moellendorffii]
          Length = 413

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 182/407 (44%), Gaps = 73/407 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           +  WG+G+ G+LG+  +  +    + +ALE ++  SV  G  ++L + D G         
Sbjct: 30  VALWGNGDQGRLGLSESGSQFEPVLCRALESHEPCSVSCGGAHTLILTDKGRVFATGLNS 89

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   K ++   P +V+   +   V  A G +H  A+   G  Y WG N  GQ G  
Sbjct: 90  SGQLGVPLKRESSFDPVEVHGFPD-PCVHIAAGRYHSAAITSSGETYVWGRNSEGQLG-- 146

Query: 110 PERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQP----WP 163
                  G+  +   + PQ+      + ++ +A G  HS+ L   G V +WG        
Sbjct: 147 ------LGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTNRFGCLG 200

Query: 164 PGDIKQI---------SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
            G++              P  +  LE  Q++ ++ G  H+    + G ++++G     QL
Sbjct: 201 HGEMTGFFDFFKDTNEYTPRIIHCLEKLQIRSVSAGLVHSACADDSGTIYSFGQGSMCQL 260

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G G+    SQP P+  L  ++   I+ GG+H+ A+T DG++Y WG  EHG LG G    S
Sbjct: 261 GLGNNNDASQPCPIPDLPRVS--SISCGGYHTGAITQDGDIYTWGSNEHGCLGSGFRASS 318

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH------------GRLGY 320
               P ++  LA   + ++SCG  H+ A++ DG+IFS+G G              G+LG 
Sbjct: 319 K---PLRLESLAEAFMSEISCGWKHTAAIS-DGYIFSWGWGGSYGTYATQAESSGGQLGV 374

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G      +P  VPI +          D R  A  V+CG  HT AI+E
Sbjct: 375 GTDFDFFEP--VPIEM----------DDRLSALHVSCGFNHTAAILE 409



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 148/337 (43%), Gaps = 47/337 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + A G    GQLG+    E  +  V     P     + AG  +S AI   G+T       
Sbjct: 82  VFATGLNSSGQLGVPLKRESSFDPVEVHGFPDPCVHIAAGRYHSAAITSSGETYVWGRNS 141

Query: 60  ----------KTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     K+  I P ++ +L+  ++   A+G  H L + + G+  +WG N +G  G 
Sbjct: 142 EGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQVLSWGTNRFGCLGH 201

Query: 109 EP-----ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
                  +   DT     R I     C  KL +R V+AG  HS      G ++++GQ   
Sbjct: 202 GEMTGFFDFFKDTNEYTPRII----HCLEKLQIRSVSAGLVHSACADDSGTIYSFGQGSM 257

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G+    S P  +  L +V  I+ G +H  A+ +DG ++ WG+NE+G LG+G  + 
Sbjct: 258 CQLGLGNNNDASQPCPIPDLPRVSSISCGGYHTGAITQDGDIYTWGSNEHGCLGSG-FRA 316

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG------------EHGRLGFG 267
            S+P+ ++ L+   + +I+  GW  TA   DG ++ WG G              G+LG G
Sbjct: 317 SSKPLRLESLAEAFMSEISC-GWKHTAAISDGYIFSWGWGGSYGTYATQAESSGGQLGVG 375

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            +    + VP  + +      + VSCG  H+ A+  +
Sbjct: 376 TDFDFFEPVP--IEMDDRLSALHVSCGFNHTAAILEE 410



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 59/299 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDG- 57
           + S+     WG   +GQLG+G   +  ++    +++L   +++++  G+ +SL + + G 
Sbjct: 128 ITSSGETYVWGRNSEGQLGLGKRAKSVYITPQKMESLAGMRLKALALGTDHSLGLAETGQ 187

Query: 58  ------------------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
                                   K   E  P  ++ L   +I   + G  H    DD G
Sbjct: 188 VLSWGTNRFGCLGHGEMTGFFDFFKDTNEYTPRIIHCLEKLQIRSVSAGLVHSACADDSG 247

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA-PKLI-VRQVAAGGTHSVVLTR 151
             Y++G     Q G            L  +    Q C  P L  V  ++ GG H+  +T+
Sbjct: 248 TIYSFGQGSMCQLG------------LGNNNDASQPCPIPDLPRVSSISCGGYHTGAITQ 295

Query: 152 EGHVWTWGQP---WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWG- 205
           +G ++TWG           +  S P+R++ L +  +  I+ G  H  A+  DG +++WG 
Sbjct: 296 DGDIYTWGSNEHGCLGSGFRASSKPLRLESLAEAFMSEISCGWKHTAAIS-DGYIFSWGW 354

Query: 206 -----------NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
                       +  GQLG G      +P+P++    L+ + ++ G  H+ A+ ++ E+
Sbjct: 355 GGSYGTYATQAESSGGQLGVGTDFDFFEPVPIEMDDRLSALHVSCGFNHTAAILEEIEI 413


>gi|408501214|ref|YP_006865133.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
 gi|408466038|gb|AFU71567.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
          Length = 1086

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 177/402 (44%), Gaps = 79/402 (19%)

Query: 9   AWGSGEDGQLGIGN-NEEREWVCVVKALE---------PYKVRSVVAGSRNSLAICDDG- 57
           AWG    GQLG G  N  R     VK  +          +    V AG R+SLA+  DG 
Sbjct: 581 AWGDNTYGQLGDGTANNSRYTPIRVKTPDRKTYPDLPADFTYVQVSAGGRHSLAVGSDGY 640

Query: 58  --------------KTKTEN-IP-------SQVNALSNTKIVQAAIGGWHCLAVDDQGRA 95
                          TKT + +P       S  +     K +Q + G WH LA+ + G A
Sbjct: 641 AYAWGNNNNGQLGNNTKTNSYVPVRIRDPGSPTDESRGLKAIQVSAGYWHSLALSNDGYA 700

Query: 96  YAWGGNEYGQCGEEPERKDDTGR--ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           YAWG + YGQ G       +     IL R+   P   +  L   QV+AG  HS+ L   G
Sbjct: 701 YAWGYDWYGQLGNNTSGSSEYSPFPILVRNPDSPTDESMGLKTIQVSAGNLHSLALDSNG 760

Query: 154 HVWTWGQPWPP--------GDIKQIS---VPVRVQ----------GLEQVKLIAVGAFHN 192
           +V+ WG  W           DI + S    PVRV+          GL+ ++ I+ G  H+
Sbjct: 761 YVYAWG--WNSYGQLGDNTNDISEDSHSAFPVRVRDPANPSETNMGLKAIQ-ISAGYDHS 817

Query: 193 LALQEDGALWAWGNNEYGQLG--------TGDTQP---RSQPIPVQGLSGLTLVDIAAGG 241
           +A+  DG  +AWG N  GQLG        +G+  P   R    P     GL    ++AG 
Sbjct: 818 MAVGSDGYAYAWGWNVKGQLGNNTISDSYSGNPVPVHVRDPANPTDTSKGLKATQVSAGY 877

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-------GEDIVQVSCG 294
           WHS A+  DG  YGWG   +G+L  G+N K+   VP  V   A       G    Q+S G
Sbjct: 878 WHSLAVGSDGYAYGWGYNWYGQL--GNNTKTDSYVPVPVRDPANPTDTNKGLKATQISSG 935

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
             HS+A+  +G+++++G   +GRLG G       P+ V  N+
Sbjct: 936 YWHSMAVGSEGYVYAWGNNGNGRLGDGTTNGKLAPVSVVFNL 977



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 151/328 (46%), Gaps = 44/328 (13%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR-CAPKL- 134
           + ++  G   LAV   G AYAWG N YGQ G+      +  R     +  P R   P L 
Sbjct: 561 ISSSNTGSFSLAVGSDGNAYAWGDNTYGQLGDGTA---NNSRYTPIRVKTPDRKTYPDLP 617

Query: 135 ---IVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS----VPVRV----------Q 177
                 QV+AGG HS+ +  +G+ + WG                VPVR+          +
Sbjct: 618 ADFTYVQVSAGGRHSLAVGSDGYAYAWGNNNNGQLGNNTKTNSYVPVRIRDPGSPTDESR 677

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG---TGDTQPRSQPI-------PVQ 227
           GL+ ++ ++ G +H+LAL  DG  +AWG + YGQLG   +G ++    PI       P  
Sbjct: 678 GLKAIQ-VSAGYWHSLALSNDGYAYAWGYDWYGQLGNNTSGSSEYSPFPILVRNPDSPTD 736

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMVPQKVNLLA 284
              GL  + ++AG  HS AL  +G VY WG   +G+LG   ND    S    P +V   A
Sbjct: 737 ESMGLKTIQVSAGNLHSLALDSNGYVYAWGWNSYGQLGDNTNDISEDSHSAFPVRVRDPA 796

Query: 285 -------GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
                  G   +Q+S G  HS+A+  DG+ +++G    G+LG      +     VP+++ 
Sbjct: 797 NPSETNMGLKAIQISAGYDHSMAVGSDGYAYAWGWNVKGQLGNNTISDSYSGNPVPVHVR 856

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAI 365
            P N  D   +   A  V+ G  H+LA+
Sbjct: 857 DPANPTD-TSKGLKATQVSAGYWHSLAV 883


>gi|348563524|ref|XP_003467557.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6-like [Cavia
           porcellus]
          Length = 1016

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 149/310 (48%), Gaps = 46/310 (14%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDDTGRILRRDIVI 126
           T ++QAA G  H L +      +A G N  GQ G       ++PE               
Sbjct: 29  TGLLQAASGERHALLLLTNQVVHACGDNSGGQLGRRGAPSGKQPE--------------- 73

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQ 181
           P +    L V  V+ G  HS+ +  +G V+ WG         G  ++I  +P +++ L  
Sbjct: 74  PIQALVNLPVDLVSCGKEHSLAVCHKGKVFAWGVGSDGQLGTGKFEEICFIPQKIKALTG 133

Query: 182 VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIA 238
           +K+I +  G +H+LAL +DG +++WG N +GQLG G   P ++ P  V+ L G+ L  +A
Sbjct: 134 IKIIQISCGYYHSLALSKDGQVFSWGKNSHGQLGLGQEFPSQASPQRVRSLEGIPLAQVA 193

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           AGG HS AL+  G  +GWG    G+L F G+N       P+ V  L    +V +SCG  H
Sbjct: 194 AGGAHSFALSLSGTSFGWGNNSAGQLAFSGNNVLVQSYKPRSVGALKNLGVVYISCGYEH 253

Query: 298 SVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           +  LT++  +F+FG    G+LG+ G   TTG  +   I  P  +              + 
Sbjct: 254 TAVLTQNDQVFTFGDNSFGQLGHNGVSQTTGPQLVEGIGGPVSQ--------------ID 299

Query: 357 CGGRHTLAIV 366
           CG  HTLA V
Sbjct: 300 CGSYHTLAYV 309



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 115/269 (42%), Gaps = 67/269 (24%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWG G DGQLG G  EE   +C                                 IP 
Sbjct: 102 VFAWGVGSDGQLGTGKFEE---ICF--------------------------------IPQ 126

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++ AL+  KI+Q + G +H LA+   G+ ++WG N +GQ G   E               
Sbjct: 127 KIKALTGIKIIQISCGYYHSLALSKDGQVFSWGKNSHGQLGLGQE--------------F 172

Query: 127 PQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGD--IKQISV 172
           P + +P+ +       + QVAAGG HS  L+  G  + W     GQ    G+  + Q   
Sbjct: 173 PSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGNNSAGQLAFSGNNVLVQSYK 232

Query: 173 PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P  V  L+   V  I+ G  H   L ++  ++ +G+N +GQLG       + P  V+G+ 
Sbjct: 233 PRSVGALKNLGVVYISCGYEHTAVLTQNDQVFTFGDNSFGQLGHNGVSQTTGPQLVEGIG 292

Query: 231 GLTLVDIAAGGWHSTA-LTDDGEVYGWGR 258
           G  +  I  G +H+ A +   G+V  +GR
Sbjct: 293 G-PVSQIDCGSYHTLAYVYTTGQVVSFGR 320


>gi|395855000|ref|XP_003799962.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Otolemur
           garnettii]
          Length = 816

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 152/313 (48%), Gaps = 26/313 (8%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           N P+ + AL   K+  AA G  H +   + G  YA GGN  GQ G     + DT  ++  
Sbjct: 76  NKPTCIKALKPEKVKFAACGRTHTIISTEGGNVYATGGNNEGQLGLGDTDERDTFHLI-- 133

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQG 178
                Q       ++Q++AG   S  LT +G ++ WG          D+  + VP +V  
Sbjct: 134 SFFTSQH-----KIKQLSAGSNTSAALTEDGQLFMWGDNSEGQIGLKDVTNVCVPHQVTI 188

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVD 236
            + +  I+ G +H+  +  DG L+ +G +E G+LG       +  IP Q +S +   ++ 
Sbjct: 189 GKPISWISCGYYHSAFVTIDGELYTFGESESGKLGLPSQLLTNHRIP-QLVSSIPDKVIQ 247

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +A GG H+  LT++  VY +G G+ G+LG G     +   P+ +  + GE I+ +SCG  
Sbjct: 248 VACGGGHTLVLTEES-VYAFGLGQFGQLGLGTFIFETSE-PKVLEYVKGEKIISISCGEN 305

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+  +T  G I++FG G HG+LG G +  T +    P +          V  +++ +LVA
Sbjct: 306 HTAMITDTGGIYTFGDGRHGKLGLGLENFTNRFFPTPCS----------VFLKFMVQLVA 355

Query: 357 CGGRHTLAIVEWQ 369
           CGG H L     Q
Sbjct: 356 CGGCHMLVFATPQ 368



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 147/322 (45%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS---------------- 50
           +  +GS   GQLG+G+         +KAL+P KV+    G  ++                
Sbjct: 56  LYMFGSNNWGQLGLGSKAAVNKPTCIKALKPEKVKFAACGRTHTIISTEGGNVYATGGNN 115

Query: 51  ---LAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
              L + D  +  T ++ S     S  KI Q + G     A+ + G+ + WG N  GQ G
Sbjct: 116 EGQLGLGDTDERDTFHLISFFT--SQHKIKQLSAGSNTSAALTEDGQLFMWGDNSEGQIG 173

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                KD T      ++ +P +      +  ++ G  HS  +T +G ++T+G+       
Sbjct: 174 ----LKDVT------NVCVPHQVTIGKPISWISCGYYHSAFVTIDGELYTFGESESGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQP 219
            P   +    +P  V  + ++V  +A G  H L L E+ +++A+G  ++GQLG G     
Sbjct: 224 LPSQLLTNHRIPQLVSSIPDKVIQVACGGGHTLVLTEE-SVYAFGLGQFGQLGLGTFIFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ + G  ++ I+ G  H+  +TD G +Y +G G HG+LG G  + +++  P  
Sbjct: 283 TSEPKVLEYVKGEKIISISCGENHTAMITDTGGIYTFGDGRHGKLGLGLENFTNRFFPTP 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            ++     +  V+CGG H +  
Sbjct: 343 CSVFLKFMVQLVACGGCHMLVF 364



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 26/238 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  HS ++T    ++      WGQ    G    ++ P  ++ L  E+VK  A G  H
Sbjct: 40  LSCGDEHSAIVTGNNKLYMFGSNNWGQ-LGLGSKAAVNKPTCIKALKPEKVKFAACGRTH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            +   E G ++A G N  GQLG GDT  R     +    S   +  ++AG   S ALT+D
Sbjct: 99  TIISTEGGNVYATGGNNEGQLGLGDTDERDTFHLISFFTSQHKIKQLSAGSNTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    D ++  VP +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 159 GQLFMWGDNSEGQIGL--KDVTNVCVPHQVTI--GKPISWISCGYYHSAFVTIDGELYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPM-EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   ++ T   + ++  +IP      D V +      VACGG HTL + E
Sbjct: 215 GESESGKLGLPSQLLTNHRIPQLVSSIP------DKVIQ------VACGGGHTLVLTE 260



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + GA++ +G  ++           ++ IP +      T + ++ G  HS  +T + ++Y 
Sbjct: 10  DSGAVFTFGKTKF-----------AENIPSKFWFKSDTPICLSCGDEHSAIVTGNNKLYM 58

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           +G    G+LG G     +K  P  +  L  E +   +CG TH++  T  G++++ G  + 
Sbjct: 59  FGSNNWGQLGLGSKAAVNK--PTCIKALKPEKVKFAACGRTHTIISTEGGNVYATGGNNE 116

Query: 316 GRLGYG 321
           G+LG G
Sbjct: 117 GQLGLG 122


>gi|432118039|gb|ELK37976.1| E3 ubiquitin-protein ligase HERC2 [Myotis davidii]
          Length = 4285

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 160/317 (50%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA G    G+ G        T  I R+
Sbjct: 2685 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGRLGLG--MSSGTVPIPRQ 2742

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPV 174
               +      K+ V    +GG H+  LT +G V++WG+    GD  ++          P 
Sbjct: 2743 VTALSSYVVKKVAVH---SGGRHATALTVDGKVFSWGE----GDDGKLGHFSRMNCDKPR 2795

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 2796 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 2855

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  VPQ +  L G+ + Q
Sbjct: 2856 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--VPQNIERLNGQGVCQ 2913

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 2914 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGKK 2962

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 2963 IVH-VAVGALHCLAVTD 2978



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 169/372 (45%), Gaps = 64/372 (17%)

Query: 28  WVCVVKALEPYK--------VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSN 73
           W C    + P +        V  +    +  L +  +G+  T+        P  V  L++
Sbjct: 434 WKCYANVIGPIQSKGLANLGVTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLAS 493

Query: 74  TKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
             IV+ A    G H LA+   G  Y+WG      CG       D GR+   D V  +   
Sbjct: 494 RNIVKIAAHSDGHHYLALAATGEVYSWG------CG-------DGGRLGHGDTVPLEE-- 538

Query: 132 PKLI-----------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
           PK+I           V  +A G T+S  +T EG ++TWG+        G  +  ++P+ V
Sbjct: 539 PKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLV 598

Query: 177 QGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            GL+ +K+I V    G    LA+ ++G +W+WG+ +YG+LG G +     P  ++ L  L
Sbjct: 599 AGLKGLKVIDVACGSGDAQPLAVTDNGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDL 658

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +V +  G   S ALT DG+VY WG+G++ RLG G  +      P+ +  L G+ ++ V+
Sbjct: 659 DVVKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVR--YPKLLEALQGKKVIDVA 716

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            G TH +ALT D  + S+G  D  +       T  +P  +P           G+D + I 
Sbjct: 717 AGSTHCLALTEDSEVHSWGNNDQCQHFDTLHQTKPEPSLLP-----------GLDTKHIV 765

Query: 353 KLVACGGRHTLA 364
             +ACG   + A
Sbjct: 766 G-IACGPAQSFA 776



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 149/319 (46%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 443 PIQSKGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 482

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 483 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 542

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 543 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 602

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G       A+TD+G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 603 GLKVIDVACGSGDAQPLAVTDNGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 660

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   SVALT+DG ++S+G+GD+ RLG+G         E  +  P    A  G  +
Sbjct: 661 VKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHG--------TEEHVRYPKLLEALQG--K 710

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + I   VA G  H LA+ E
Sbjct: 711 KVID--VAAGSTHCLALTE 727



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 155/334 (46%), Gaps = 59/334 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVV--AGSRNSLAICDDGKTKT-- 61
            + A G   +G+LG+G +     +   V AL  Y V+ V   +G R++ A+  DGK  +  
Sbjct: 2717 VYACGEATNGRLGLGMSSGTVPIPRQVTALSSYVVKKVAVHSGGRHATALTVDGKVFSWG 2776

Query: 62   --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           + P  + AL   +I   A G  H  A+   G  Y WG  EYG+ G
Sbjct: 2777 EGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLG 2836

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTW 158
                  D+T ++            PK++       V QVA G     ++ LT EG V++W
Sbjct: 2837 ----HGDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSW 2881

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++        +VP  ++ L  + V  I  GA  +LAL + G +W WG  +
Sbjct: 2882 GD----GDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2937

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G G 
Sbjct: 2938 YFRLGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDAGQVYAWGDNDHGQQGNGT 2997

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
               + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 2998 TTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3029



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 24/262 (9%)

Query: 87   LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGT 144
            L+    G  Y WG N  GQ           G I    + +P  C     +R  Q+  G  
Sbjct: 3625 LSAGGSGTIYGWGHNHRGQ----------LGGIEGAKVKVPTPCEALATLRPVQLIGGEQ 3674

Query: 145  HSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQ 196
                +T +G ++  G         G  + +S P  ++ ++ V +  V    G  H LAL 
Sbjct: 3675 TLFAVTADGKLYATGYGAGGRLGVGGTESVSAPTLLESIQHVFIRKVAVNSGGKHCLALS 3734

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
             +G +++WG  E G+LG G+  P  +P  V+ L G  +VDIAAGG HS  +T  G++Y W
Sbjct: 3735 SEGEVYSWGEAEDGKLGHGNRSPCDRPRVVESLRGTEVVDIAAGGAHSACVTSAGDLYTW 3794

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGD 314
            G+G +GRLG  D++   K  P+ V  L G  +V V+CG     ++ LT D  ++S+G GD
Sbjct: 3795 GKGRYGRLGHSDSEDQLK--PKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGD 3852

Query: 315  HGRLGYGRKVTTGQPMEVPINI 336
            +G+LG G       PM+VP+++
Sbjct: 3853 YGKLGRGGSDGCKVPMKVPLSL 3874



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 153/364 (42%), Gaps = 79/364 (21%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+   AL+  + VQ   G     AV   G+ YA G    G+ G           +L  
Sbjct: 3653 KVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGVGGTESVSAPTLLES 3712

Query: 123  DIVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRV 176
                       + +R+VA  +GG H + L+ EG V++WG+        G+      P  V
Sbjct: 3713 --------IQHVFIRKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVV 3764

Query: 177  QGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L   +V  IA G  H+  +   G L+ WG   YG+LG  D++ + +P  V+ L G  +
Sbjct: 3765 ESLRGTEVVDIAAGGAHSACVTSAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV 3824

Query: 235  VDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL---------- 282
            VD+A G     +  LTDD  V+ WG G++G+LG G +D     VP KV L          
Sbjct: 3825 VDVACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCK--VPMKVPLSLRVGRPSTP 3882

Query: 283  ----------------------------------LAGEDIVQVSCGGTHSVALTRDGHIF 308
                                              L G+ ++ ++ G  H V  T +G ++
Sbjct: 3883 PPSWPRLDVGGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEEGEVY 3942

Query: 309  SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            ++G  D G+LG G    T   ++ P  + A +  G  V+R      VACG  HTLA   W
Sbjct: 3943 TWGDNDEGQLGDG----TTNAIQRPRLVAALQ--GRKVNR------VACGSAHTLA---W 3987

Query: 369  QTEE 372
             T +
Sbjct: 3988 STSK 3991



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV D G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQPLAVTDNGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   SV LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSVALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++ L+  K+I  A G+ H LAL ED  + +WGNN+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEALQGKKVIDVAAGSTHCLALTEDSEVHSWGNNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                Q + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLHQTKPEPSLLPGLDTKHIVGIACGPAQSFA 776



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 46/273 (16%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            ++S   + +WG  EDG+LG GN    +   VV++L   +V  + AG  +S  +   G   
Sbjct: 3733 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVVESLRGTEVVDIAAGGAHSACVTSAGDLY 3792

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
            T                +  P  V AL   ++V  A G      L + D    ++WG  +
Sbjct: 3793 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDVACGSGDAQTLCLTDDDTVWSWGDGD 3852

Query: 103  YGQCG-------EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            YG+ G       + P +   + R+ R     P    P+L V     G  H     R GH 
Sbjct: 3853 YGKLGRGGSDGCKVPMKVPLSLRVGRPS--TPPPSWPRLDVG--GKGDYH-----RLGH- 3902

Query: 156  WTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLG 213
                     G    +  P +VQGL+  K+IA+  G+ H +   E+G ++ WG+N+ GQLG
Sbjct: 3903 ---------GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEEGEVYTWGDNDEGQLG 3953

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             G T    +P  V  L G  +  +A G  H+ A
Sbjct: 3954 DGTTNAIQRPRLVAALQGRKVNRVACGSAHTLA 3986



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 2818 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 2877

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            ++  N+P  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 2878 VFSWGDGDFGKLGRGGSEGCNVPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 2937

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G   +        +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 2938 YFRLGHGSDVH------VRKPQVVEGLRGKKIV--HVAVGALHCLAVTDAGQVYAWGDND 2989

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 2990 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3027



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 32/190 (16%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------------SVVAGSRNSLAICDD 56
            +WG G+ G+LG G ++     C V    P  +R             +  G +        
Sbjct: 3847 SWGDGDYGKLGRGGSDG----CKVPMKVPLSLRVGRPSTPPPSWPRLDVGGKGDYHRLGH 3902

Query: 57   GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
            G       P QV  L   K++  A G  HC+   ++G  Y WG N+ GQ G      D T
Sbjct: 3903 GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEEGEVYTWGDNDEGQLG------DGT 3956

Query: 117  GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRV 176
               ++R  ++      K  V +VA G  H++        W+  +P   G +    VP+  
Sbjct: 3957 TNAIQRPRLVAALQGRK--VNRVACGSAHTL-------AWSTSKPASAGKLPA-QVPMEY 4006

Query: 177  QGLEQVKLIA 186
              L+++ ++A
Sbjct: 4007 NHLQELPVVA 4016



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
            +D +   VP     L+  ++VQV+ G     A+T +G +++ G   +GRLG G    T  
Sbjct: 2679 SDCTEIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGRLGLGMSSGT-- 2736

Query: 329  PMEVPINIPAPRNAGDGVDRRWIAKLVAC--GGRHTLAIV 366
                   +P PR         ++ K VA   GGRH  A+ 
Sbjct: 2737 -------VPIPRQV--TALSSYVVKKVAVHSGGRHATALT 2767


>gi|345323514|ref|XP_003430715.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
           [Ornithorhynchus anatinus]
          Length = 806

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 152/317 (47%), Gaps = 28/317 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T N P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G      D  
Sbjct: 156 GSKTTVNKPTCVKALKPEKVKFAACGRNHTLVCTEGGNVYAAGGNSDGQLG----LGDTE 211

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-----KQIS 171
            R     I        +  ++Q++AG   S  LT +G ++ WG     G I       + 
Sbjct: 212 ERTTFHQISF---FTSRYKIKQLSAGSNTSAALTEDGELYMWGDN-SEGQIGLASESNVC 267

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGL 229
           VP RV   + V  ++ G +H+  +  DG L+ +G  E G+LG    Q ++  IP  V G+
Sbjct: 268 VPCRVVIGKPVSWVSCGYYHSALVTTDGELYTFGEPENGKLGLSSEQLKNHRIPQLVPGI 327

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           SG  +  +A GG H+ ALT++ +VY +G GE G+LG G     +  VP+ V  L  + I 
Sbjct: 328 SG-KVNQVACGGGHTVALTEE-DVYTFGLGEFGQLGLGTCIFETS-VPKVVEHLRKQKIH 384

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            V+CG  H+  ++  G +++FG G HG+LG G +  T Q +        P    + +  R
Sbjct: 385 YVACGENHTALISDTGLMYTFGDGRHGKLGLGEENFTNQFI--------PTLCSNFL--R 434

Query: 350 WIAKLVACGGRHTLAIV 366
           +   LVACGG H L   
Sbjct: 435 FSVHLVACGGCHMLVFA 451



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 38/330 (11%)

Query: 47  SRNSLAICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
           +R+S A+   GK+K  ENIPS+   L N  + Q + G  H   V    + Y  G N +GQ
Sbjct: 94  TRHSGAVFTFGKSKFAENIPSKF-WLRNDTLAQLSCGDEHTAFVTGNSKLYMLGSNNWGQ 152

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            G           +  +  V    C   L    V+  A G  H++V T  G+V+  G   
Sbjct: 153 LG-----------LGSKTTVNKPTCVKALKPEKVKFAACGRNHTLVCTEGGNVYAAGGNS 201

Query: 163 P----PGDIKQISVPVRVQGLE---QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 GD ++ +   ++       ++K ++ G+  + AL EDG L+ WG+N  GQ+G  
Sbjct: 202 DGQLGLGDTEERTTFHQISFFTSRYKIKQLSAGSNTSAALTEDGELYMWGDNSEGQIGLA 261

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
                +  +P + + G  +  ++ G +HS  +T DGE+Y +G  E+G+LG       +  
Sbjct: 262 SES--NVCVPCRVVIGKPVSWVSCGYYHSALVTTDGELYTFGEPENGKLGLSSEQLKNHR 319

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           +PQ V  ++G+ + QV+CGG H+VALT +  +++FG G+ G+LG G  +      +V  +
Sbjct: 320 IPQLVPGISGK-VNQVACGGGHTVALTEED-VYTFGLGEFGQLGLGTCIFETSVPKVVEH 377

Query: 336 IPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +           R+     VACG  HT  I
Sbjct: 378 L-----------RKQKIHYVACGENHTALI 396



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 144/323 (44%), Gaps = 38/323 (11%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           + +   GS   GQLG+G+         VKAL+P KV+    G RN   +C +G       
Sbjct: 140 SKLYMLGSNNWGQLGLGSKTTVNKPTCVKALKPEKVKFAACG-RNHTLVCTEGGNVYAAG 198

Query: 58  ----------KTKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                      T+      Q++   S  KI Q + G     A+ + G  Y WG N  GQ 
Sbjct: 199 GNSDGQLGLGDTEERTTFHQISFFTSRYKIKQLSAGSNTSAALTEDGELYMWGDNSEGQI 258

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----- 161
           G   E           ++ +P R      V  V+ G  HS ++T +G ++T+G+P     
Sbjct: 259 GLASES----------NVCVPCRVVIGKPVSWVSCGYYHSALVTTDGELYTFGEPENGKL 308

Query: 162 -WPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-Q 218
                 +K   +P  V G+  +V  +A G  H +AL E+  ++ +G  E+GQLG G    
Sbjct: 309 GLSSEQLKNHRIPQLVPGISGKVNQVACGGGHTVALTEED-VYTFGLGEFGQLGLGTCIF 367

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             S P  V+ L    +  +A G  H+  ++D G +Y +G G HG+LG G+ + +++ +P 
Sbjct: 368 ETSVPKVVEHLRKQKIHYVACGENHTALISDTGLMYTFGDGRHGKLGLGEENFTNQFIPT 427

Query: 279 KVNLLAGEDIVQVSCGGTHSVAL 301
             +      +  V+CGG H +  
Sbjct: 428 LCSNFLRFSVHLVACGGCHMLVF 450



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 24/238 (10%)

Query: 138 QVAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAF 190
           Q++ G  H+  +T    ++      WGQ    G    ++ P  V+ L  E+VK  A G  
Sbjct: 125 QLSCGDEHTAFVTGNSKLYMLGSNNWGQ-LGLGSKTTVNKPTCVKALKPEKVKFAACGRN 183

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTD 249
           H L   E G ++A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+
Sbjct: 184 HTLVCTEGGNVYAAGGNSDGQLGLGDTEERTTFHQISFFTSRYKIKQLSAGSNTSAALTE 243

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DGE+Y WG    G++G     +S+  VP +V  + G+ +  VSCG  HS  +T DG +++
Sbjct: 244 DGELYMWGDNSEGQIGLAS--ESNVCVPCRV--VIGKPVSWVSCGYYHSALVTTDGELYT 299

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           FG  ++G+LG   +        +P  +P       G+  +     VACGG HT+A+ E
Sbjct: 300 FGEPENGKLGLSSEQLKNH--RIPQLVP-------GISGK--VNQVACGGGHTVALTE 346


>gi|27923073|gb|AAO27475.1| HERC2 [Homo sapiens]
          Length = 328

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 37/318 (11%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 19  KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 69

Query: 123 DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-----VP 173
            + IP++       +V++VA  +GG H+  LT +G V+ WG+    G +   S      P
Sbjct: 70  TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFWWGEG-DDGKLGHFSRMNCDKP 128

Query: 174 VRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
             ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G
Sbjct: 129 RLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLG 188

Query: 232 LTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + 
Sbjct: 189 HRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVC 246

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
           Q+ CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  +
Sbjct: 247 QIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV-----------EGLRGK 295

Query: 350 WIAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 296 KIVH-VAVGALHCLAVTD 312



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 37/337 (10%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----------- 58
           WG  +  QLG     + +     + L    V  V  GS++  A+  +GK           
Sbjct: 2   WGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEATNGR 61

Query: 59  ------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                 + T  IP Q+ ALS+  + + A+  GG H  A+   G+ + WG  + G+ G   
Sbjct: 62  LGLGISSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFWWGEGDDGKLGHFS 121

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
               D  R++  + +  +R      +R +A G +HS  LT  G ++TWG         GD
Sbjct: 122 RMNCDKPRLI--EALKTKR------IRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGD 173

Query: 167 IKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                 P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G ++  + 
Sbjct: 174 NTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCNI 233

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  ++ L+G  +  I  G   S ALT  G V+ WG+G++ RLG G +    K  PQ V  
Sbjct: 234 PQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRK--PQVVEG 291

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           L G+ IV V+ G  H +A+T  G ++++G  DHG+ G
Sbjct: 292 LRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQG 328



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 135/269 (50%), Gaps = 29/269 (10%)

Query: 113 KDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK-- 168
           KD  G +    I +P        L V QVA G      +T EG V+  G+    G +   
Sbjct: 7   KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGEA-TNGRLGLG 65

Query: 169 ----QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                + +P ++  L    VK +AV  G  H  AL  DG ++ WG  + G+LG       
Sbjct: 66  ISSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFWWGEGDDGKLGHFSRMNC 125

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +P  ++ L    + DIA G  HS ALT  GE+Y WG GE+GRLG GDN  ++++ P+ V
Sbjct: 126 DKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDN--TTQLKPKMV 183

Query: 281 NLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG G      +   +P NI  
Sbjct: 184 KVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS----EGCNIPQNI-- 237

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            R  G GV +      + CG + +LA+ +
Sbjct: 238 ERLNGQGVCQ------IECGAQFSLALTK 260



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 51/294 (17%)

Query: 7   IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
           + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R++ A+  DGK 
Sbjct: 51  VYACGEATNGRLGLGISSGTVPIPRQ----ITALSSYVVKKVAVHSGGRHATALTVDGKV 106

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                              + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 107 FWWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 166

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQP 161
           G+ G          ++++  +++  R      V QVA G     ++ LT EG V++WG  
Sbjct: 167 GRLGHGDNTTQLKPKMVK--VLLGHR------VIQVACGSRDAQTLALTDEGLVFSWGD- 217

Query: 162 WPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
              GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W WG  +Y +
Sbjct: 218 ---GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGDYFR 274

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ G
Sbjct: 275 LGHGSDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQG 328



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 48/219 (21%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR++          
Sbjct: 152 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDA---------- 201

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                     LA+ D+G  ++WG  ++G+ G    R    G  +
Sbjct: 202 ------------------------QTLALTDEGLVFSWGDGDFGKLG----RGGSEGCNI 233

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
            ++I   +R   + +  Q+  G   S+ LT+ G VWTWG+        G    +  P  V
Sbjct: 234 PQNI---ERLNGQGVC-QIECGAQFSLALTKSGVVWTWGKGDYFRLGHGSDVHVRKPQVV 289

Query: 177 QGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           +GL   K+  +AVGA H LA+ + G ++AWG+N++GQ G
Sbjct: 290 EGLRGKKIVHVAVGALHCLAVTDSGQVYAWGDNDHGQQG 328


>gi|148263541|ref|YP_001230247.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
 gi|146397041|gb|ABQ25674.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
          Length = 1919

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 156/314 (49%), Gaps = 36/314 (11%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG     N P Q+   +N  +V A  G  H +A+   G  +AWG N  GQ G +P+    
Sbjct: 111 DGTYNNRNYPMQIGTDTNWTVVAA--GERHSIALRSDGTLWAWGDNSSGQLG-DPKIGIG 167

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS---- 171
           T          PQ+         +AAG  HS+ L  +G +W WG  W  G ++  S    
Sbjct: 168 TST--------PQQIGASADWVAIAAGAYHSLALKTDGSLWAWGSGW-SGQLEMASDQSD 218

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            P+++    +   IA G  H++A++ DG LWAWG+N  GQLG G     + P+ V G + 
Sbjct: 219 TPLQIDSESRWVAIAAGYTHSVAIKSDGTLWAWGDNSSGQLGDGTYDGSNIPVQVGGDT- 277

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
              + I+AG  H+ A+  DG ++GWG    G+LG G ND  S+ +P ++++    D   V
Sbjct: 278 -NWIAISAGMSHTVAIKSDGSLWGWGGNWSGQLGTGTND--SQNIPTRIDI--ANDWRSV 332

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + G  H++AL  DG ++++G   +G++G G +     P+++            G D  W 
Sbjct: 333 AAGDEHTIALKTDGTMWAWGNNIYGQVGDGTQENRLFPIQI------------GKDSLW- 379

Query: 352 AKLVACGGRHTLAI 365
             L++ GG ++LA+
Sbjct: 380 -SLISTGGYNSLAV 392



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 150/331 (45%), Gaps = 46/331 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------- 61
           WG+   GQLG G    R +   +     + V  V AG R+S+A+  DG            
Sbjct: 101 WGANWSGQLGDGTYNNRNYPMQIGTDTNWTV--VAAGERHSIALRSDGTLWAWGDNSSGQ 158

Query: 62  ---------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                     + P Q+ A ++   V  A G +H LA+   G  +AWG    GQ     ++
Sbjct: 159 LGDPKIGIGTSTPQQIGASAD--WVAIAAGAYHSLALKTDGSLWAWGSGWSGQLEMASDQ 216

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK 168
            D            P +   +     +AAG THSV +  +G +W WG         G   
Sbjct: 217 SD-----------TPLQIDSESRWVAIAAGYTHSVAIKSDGTLWAWGDNSSGQLGDGTYD 265

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             ++PV+V G      I+ G  H +A++ DG+LW WG N  GQLGTG     SQ IP + 
Sbjct: 266 GSNIPVQVGGDTNWIAISAGMSHTVAIKSDGSLWGWGGNWSGQLGTGTND--SQNIPTRI 323

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
                   +AAG  H+ AL  DG ++ WG   +G++G  D  + +++ P ++    G+D 
Sbjct: 324 DIANDWRSVAAGDEHTIALKTDGTMWAWGNNIYGQVG--DGTQENRLFPIQI----GKDS 377

Query: 289 V--QVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +   +S GG +S+A+  DG ++ +G   +G 
Sbjct: 378 LWSLISTGGYNSLAVKADGTLWIWGPNSNGE 408



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 133/287 (46%), Gaps = 36/287 (12%)

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           +H   V + G  + WG N  GQ G+        G    R+   P +         VAAG 
Sbjct: 87  YHTAEVKNDGTLWTWGANWSGQLGD--------GTYNNRNY--PMQIGTDTNWTVVAAGE 136

Query: 144 THSVVLTREGHVWTWGQPWP--PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQED 198
            HS+ L  +G +W WG       GD K     S P ++        IA GA+H+LAL+ D
Sbjct: 137 RHSIALRSDGTLWAWGDNSSGQLGDPKIGIGTSTPQQIGASADWVAIAAGAYHSLALKTD 196

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G+LWAWG+   GQL     Q  +   P+Q  S    V IAAG  HS A+  DG ++ WG 
Sbjct: 197 GSLWAWGSGWSGQLEMASDQSDT---PLQIDSESRWVAIAAGYTHSVAIKSDGTLWAWGD 253

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              G+LG G  D S+  +P +V      + + +S G +H+VA+  DG ++ +G    G+L
Sbjct: 254 NSSGQLGDGTYDGSN--IPVQVG--GDTNWIAISAGMSHTVAIKSDGSLWGWGGNWSGQL 309

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G G   +   P  + I       A D     W  + VA G  HT+A+
Sbjct: 310 GTGTNDSQNIPTRIDI-------AND-----W--RSVAAGDEHTIAL 342



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 124/266 (46%), Gaps = 35/266 (13%)

Query: 111 ERKDDTGRILRRDIVIPQRCAP----KLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--- 163
           E  DD G +  R++       P         +++A   H+  +  +G +WTWG  W    
Sbjct: 51  EAADDVGNMAYREVKFAVDATPPGPENSGTSRISAS-YHTAEVKNDGTLWTWGANWSGQL 109

Query: 164 -PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-- 220
             G     + P+++       ++A G  H++AL+ DG LWAWG+N  GQLG     P+  
Sbjct: 110 GDGTYNNRNYPMQIGTDTNWTVVAAGERHSIALRSDGTLWAWGDNSSGQLG----DPKIG 165

Query: 221 -SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
                P Q  +    V IAAG +HS AL  DG ++ WG G  G+L     + +S      
Sbjct: 166 IGTSTPQQIGASADWVAIAAGAYHSLALKTDGSLWAWGSGWSGQL-----EMASDQSDTP 220

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           + + +    V ++ G THSVA+  DG ++++G    G+LG G    +  P++V       
Sbjct: 221 LQIDSESRWVAIAAGYTHSVAIKSDGTLWAWGDNSSGQLGDGTYDGSNIPVQV------- 273

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
                G D  WIA  ++ G  HT+AI
Sbjct: 274 -----GGDTNWIA--ISAGMSHTVAI 292



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 62/306 (20%)

Query: 9   AWGSGEDGQLG-----IGNNEER------EWVCVVKALEPYKVRSVVAGSRNSLAICDDG 57
           AWG    GQLG     IG +  +      +WV +             AG+ +SLA+  DG
Sbjct: 150 AWGDNSSGQLGDPKIGIGTSTPQQIGASADWVAIA------------AGAYHSLALKTDG 197

Query: 58  K---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           +   + P Q++  S ++ V  A G  H +A+   G  +AWG N 
Sbjct: 198 SLWAWGSGWSGQLEMASDQSDTPLQID--SESRWVAIAAGYTHSVAIKSDGTLWAWGDNS 255

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            GQ G+      +          IP +         ++AG +H+V +  +G +W WG  W
Sbjct: 256 SGQLGDGTYDGSN----------IPVQVGGDTNWIAISAGMSHTVAIKSDGSLWGWGGNW 305

Query: 163 P----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                 G     ++P R+      + +A G  H +AL+ DG +WAWGNN YGQ+G G  +
Sbjct: 306 SGQLGTGTNDSQNIPTRIDIANDWRSVAAGDEHTIALKTDGTMWAWGNNIYGQVGDGTQE 365

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  PI +   S  +L  I+ GG++S A+  DG ++ WG   +G          + M+P 
Sbjct: 366 NRLFPIQIGKDSLWSL--ISTGGYNSLAVKADGTLWIWGPNSNGET------NEAIMIPA 417

Query: 279 KVNLLA 284
           K  + A
Sbjct: 418 KQQIAA 423



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 27/262 (10%)

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQV--AAGGTHSVVLTREGHVWTWGQPWP----P 164
           E  + +G     D+       P ++V     AA G H+VV+ ++G +WTWG  W      
Sbjct: 729 EATNASGVAGYADVTFVVDTTPPILVTPTVKAASGYHTVVIQKDGSLWTWGANWNGELGD 788

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G  +    PV +          VG  H +AL++DG LWAWG N  G+LG G T  +  P+
Sbjct: 789 GTTEDKLSPVHIGMGTDWADAVVGEEHTVALKKDGGLWAWGYNGDGELGDGTTDGKLTPV 848

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            +   +  +   +AAG +++ AL  +G ++G   G +G  G GD  K+ K  P ++N  A
Sbjct: 849 RIGFDNDWSA--LAAGSYYTLALKKNGTLWG--WGYNGYGGLGDGSKTDKWEPVQIN--A 902

Query: 285 GEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
             D V ++   T H+VAL  DG ++++G+ ++G++G G  +    P+ + I         
Sbjct: 903 DADWVAIAASDTDHTVALKSDGSLWAWGQNNYGQVGDGTNIDKESPVRIAI--------- 953

Query: 344 DGVDRRWIAKLVACGGRHTLAI 365
              D  W  K ++ G   T+AI
Sbjct: 954 ---DTDW--KSISAGAGFTMAI 970



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 34/281 (12%)

Query: 57   GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
            G   TE+  S V+    T    A +G  H +A+   G  +AWG N  G+ G+        
Sbjct: 787  GDGTTEDKLSPVHIGMGTDWADAVVGEEHTVALKKDGGLWAWGYNGDGELGDGTTD---- 842

Query: 117  GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV---- 172
            G++       P R         +AAG  +++ L + G +W WG     G           
Sbjct: 843  GKL------TPVRIGFDNDWSALAAGSYYTLALKKNGTLWGWGYNGYGGLGDGSKTDKWE 896

Query: 173  PVRVQG-LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV++    + V + A    H +AL+ DG+LWAWG N YGQ+G G    +  P+ +     
Sbjct: 897  PVQINADADWVAIAASDTDHTVALKSDGSLWAWGQNNYGQVGDGTNIDKESPVRIA---- 952

Query: 232  LTLVD-----IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
               +D     I+AG   + A+  DG ++ WGR  +G+L  GD  + ++ +P +V   +  
Sbjct: 953  ---IDTDWKSISAGAGFTMAIKTDGTLWAWGRNSNGQL--GDGSRLNRALPARVG--SDT 1005

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG---YGRKV 324
            D  QV  G  H VA   DG ++++G     +LG   Y RK+
Sbjct: 1006 DWTQVYAGWGHVVATKTDGSLWTWGANYSSQLGDGTYERKL 1046



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 98/212 (46%), Gaps = 19/212 (8%)

Query: 139  VAAGGT-HSVVLTREGHVWTWGQP--WPPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNL 193
            +AA  T H+V L  +G +W WGQ      GD   I    PVR+      K I+ GA   +
Sbjct: 909  IAASDTDHTVALKSDGSLWAWGQNNYGQVGDGTNIDKESPVRIAIDTDWKSISAGAGFTM 968

Query: 194  ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGE 252
            A++ DG LWAWG N  GQLG G    R+ P  V   +  T V     GW H  A   DG 
Sbjct: 969  AIKTDGTLWAWGRNSNGQLGDGSRLNRALPARVGSDTDWTQV---YAGWGHVVATKTDGS 1025

Query: 253  VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF-SFG 311
            ++ WG     +LG G  ++  K++P+   +    +++ V+     S  + + G +   +G
Sbjct: 1026 LWTWGANYSSQLGDGTYER--KLLPENSGI---NNVLSVATLKEDSTVVIKSGGVLWGWG 1080

Query: 312  RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
                G LG G    T + + +PI I  P   G
Sbjct: 1081 YNGDGELGSG----TNEDIVIPIPILVPSGKG 1108



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 49/299 (16%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKV------RSVVAGSRNSLAICDDGK---- 58
            AWG   DG+LG G  + +        L P ++       ++ AGS  +LA+  +G     
Sbjct: 827  AWGYNGDGELGDGTTDGK--------LTPVRIGFDNDWSALAAGSYYTLALKKNGTLWGW 878

Query: 59   -----------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       +KT+   P Q+NA ++  +  AA    H +A+   G  +AWG N YGQ 
Sbjct: 879  GYNGYGGLGDGSKTDKWEPVQINADAD-WVAIAASDTDHTVALKSDGSLWAWGQNNYGQV 937

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PP 164
            G+      ++          P R A     + ++AG   ++ +  +G +W WG+      
Sbjct: 938  GDGTNIDKES----------PVRIAIDTDWKSISAGAGFTMAIKTDGTLWAWGRNSNGQL 987

Query: 165  GDIKQI--SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            GD  ++  ++P RV        +  G  H +A + DG+LW WG N   QLG G  + +  
Sbjct: 988  GDGSRLNRALPARVGSDTDWTQVYAGWGHVVATKTDGSLWTWGANYSSQLGDGTYERKLL 1047

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTALTDDGEV-YGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P    G++   ++ +A     ST +   G V +GWG    G LG G N+     +P  V
Sbjct: 1048 P-ENSGIN--NVLSVATLKEDSTVVIKSGGVLWGWGYNGDGELGSGTNEDIVIPIPILV 1103



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 23/223 (10%)

Query: 23   NEEREWVCVVKALEPYKVRSVVAGS-----RNSLAICDDGKTKTENIPSQVNALSNTKIV 77
            N + +WV +  +   + V     GS     +N+     DG    +  P ++   ++ K +
Sbjct: 901  NADADWVAIAASDTDHTVALKSDGSLWAWGQNNYGQVGDGTNIDKESPVRIAIDTDWKSI 960

Query: 78   QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
             A  G    +A+   G  +AWG N  GQ G+        G  L R   +P R        
Sbjct: 961  SAGAG--FTMAIKTDGTLWAWGRNSNGQLGD--------GSRLNR--ALPARVGSDTDWT 1008

Query: 138  QVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQGLEQVKLIA-VGAFHN 192
            QV AG  H V    +G +WTWG  +      G  ++  +P    G+  V  +A +     
Sbjct: 1009 QVYAGWGHVVATKTDGSLWTWGANYSSQLGDGTYERKLLPEN-SGINNVLSVATLKEDST 1067

Query: 193  LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            + ++  G LW WG N  G+LG+G  +    PIP+   SG  L+
Sbjct: 1068 VVIKSGGVLWGWGYNGDGELGSGTNEDIVIPIPILVPSGKGLL 1110


>gi|170050907|ref|XP_001861523.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
 gi|167872400|gb|EDS35783.1| hect E3 ubiquitin ligase [Culex quinquefasciatus]
          Length = 4784

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 160/334 (47%), Gaps = 64/334 (19%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKTK---- 60
            + A G G +G+LG+G+N        V  L  Y V+ V   +G ++++A+  DGK      
Sbjct: 2961 LYACGEGTNGRLGLGHNNNVPTPRQVPILNQYVVKKVAVHSGGKHAMALTLDGKVFSWGE 3020

Query: 61   ------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        T   P  + +L   +I   A G  H  A+   G  Y WG  EYG+ G 
Sbjct: 3021 GEDGKLGHGNRVTLEKPKLLESLRTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLG- 3079

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGHVWTWG 159
                 D+  ++            PKL+       V QVA G     ++ LT EG V++WG
Sbjct: 3080 ---HGDNCTQL-----------KPKLVTALQGHRVVQVACGSRDAQTLCLTEEGLVFSWG 3125

Query: 160  QPWPPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEY 209
                 GD  ++        SVP +V+ L  V ++ +  GA  +LAL + G +W WG  +Y
Sbjct: 3126 D----GDFGKLGRGGSEGCSVPHQVERLNGVGVVQIECGAQFSLALTKIGEVWTWGKGDY 3181

Query: 210  GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
             +LG G  Q   +P P+QGL G  ++ +A G  H  A+TD G+V+ WG  +HG+ G G+ 
Sbjct: 3182 YRLGHGTDQHVRKPTPIQGLRGKKVIHVAVGALHCLAVTDSGQVFAWGDNDHGQQGSGNT 3241

Query: 270  DKSSKMVPQKVNLLAGED---IVQVSCGGTHSVA 300
                 +V +K NL+ G D   + +V+CG +HSVA
Sbjct: 3242 -----VVNKKPNLVLGLDGVFVNRVACGSSHSVA 3270



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 139/264 (52%), Gaps = 24/264 (9%)

Query: 65  PSQVNALSNTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           P  V  L    ++Q A    G H +A+   G  Y+WG  E G+ G       +       
Sbjct: 568 PKLVEGLEGVSVIQIAAHCEGRHAMALSSAGEVYSWGAGEGGRLGHGDTASKE------- 620

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
              +P + A +  V  + AG ++S  ++  G ++TWG+        G+     VP +VQ 
Sbjct: 621 ---VPTKIALEKQVTAIYAGASYSAAVSSVGELFTWGRGTYGRLGHGNSDDKFVPTQVQA 677

Query: 179 LEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           L+  K++ V    G  H++A+ + G L+AWG+ ++G+LG G       P+ ++G+S  ++
Sbjct: 678 LKAYKVVDVALGSGDAHSMAVTDGGLLFAWGDGDFGKLGNGSCNGSPLPVQIEGVS--SV 735

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             I +G   S AL+ DG +Y WG+G  GRLG G+++ S+  VP+ V+ L G+ IV V+ G
Sbjct: 736 ARIYSGSQFSVALSYDGTLYSWGKGHGGRLGHGNSEHSN--VPKLVHALEGKKIVDVAVG 793

Query: 295 GTHSVALTRDGHIFSFGRGDHGRL 318
             H +ALT  G ++ +GR D+ ++
Sbjct: 794 SAHCLALTSSGELYGWGRNDYQQI 817



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 156/312 (50%), Gaps = 28/312 (8%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P+  + LS  K +  + G      V   G+ YA G    G+ G        T R +   
Sbjct: 2930 LPTYSSVLSQLKPIHISGGSKSLFIVSQDGKLYACGEGTNGRLGLGHNNNVPTPRQVP-- 2987

Query: 124  IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
             ++ Q    K+ V    +GG H++ LT +G V++WG+        G+   +  P  ++ L
Sbjct: 2988 -ILNQYVVKKVAVH---SGGKHAMALTLDGKVFSWGEGEDGKLGHGNRVTLEKPKLLESL 3043

Query: 180  --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
              ++++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V  L G  +V +
Sbjct: 3044 RTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTALQGHRVVQV 3103

Query: 238  AAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            A G     +  LT++G V+ WG G+ G+LG G ++  S  VP +V  L G  +VQ+ CG 
Sbjct: 3104 ACGSRDAQTLCLTEEGLVFSWGDGDFGKLGRGGSEGCS--VPHQVERLNGVGVVQIECGA 3161

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
              S+ALT+ G ++++G+GD+ RLG+G    T Q +  P  I   R  G  V        V
Sbjct: 3162 QFSLALTKIGEVWTWGKGDYYRLGHG----TDQHVRKPTPIQGLR--GKKVIH------V 3209

Query: 356  ACGGRHTLAIVE 367
            A G  H LA+ +
Sbjct: 3210 AVGALHCLAVTD 3221



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 156/362 (43%), Gaps = 81/362 (22%)

Query: 5    TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
            ++I  WG    GQLG  +    +     +AL   +   +  G +   A+  DGK      
Sbjct: 3944 STIFGWGHNHRGQLGGLDGSRIKMPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGY 4003

Query: 59   ----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQC 106
                      T + + P+ V +L +  I + A+  GG HCLA+   G  ++WG  E G+ 
Sbjct: 4004 GAGGRLGIGGTDSVSTPTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKL 4063

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG 159
            G     +D   R             PKLI       V  +A G  HS  +T +GHV TWG
Sbjct: 4064 GHG--NRDSYDR-------------PKLIEALSGIGVVDIACGSAHSACITSQGHVLTWG 4108

Query: 160  --------------QPWPPGDIKQISV-----------------------PVRVQGLEQV 182
                          Q  P   + + ++                       P++++ L  +
Sbjct: 4109 KGRYGRLGHGDSEDQLQPKRCVLRTTIMCGVGVTAIMASLAEEVPMGARSPMKIESLAGL 4168

Query: 183  KLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
             +I V  G+  ++AL   G+++ WG  +Y +LG G+T    +P  V  L G  ++ IA G
Sbjct: 4169 GVIKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNTDHVRRPKKVAALQGKKIISIATG 4228

Query: 241  GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              H  A +D GEV+ WG  + G+L  GD   ++   P+ V  L G+ IV+V CG  H++A
Sbjct: 4229 SLHCVACSDSGEVFTWGDNDEGQL--GDGTVTAIQRPRLVQSLQGKHIVKVICGSAHTLA 4286

Query: 301  LT 302
            L+
Sbjct: 4287 LS 4288



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 63/351 (17%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P+   ALS  + +Q A G     AV   G+ YA G    G+ G        T  ++   
Sbjct: 3967 MPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGYGAGGRLGIGGTDSVSTPTLVES- 4025

Query: 124  IVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
                      +I+++VA  +GG H + L+ +G V++WG+        G+      P  ++
Sbjct: 4026 -------LQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDRPKLIE 4078

Query: 178  GLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP------------ 223
             L  + +  IA G+ H+  +   G +  WG   YG+LG GD++ + QP            
Sbjct: 4079 ALSGIGVVDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKRCVLRTTIMCG 4138

Query: 224  ---------------------IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
                                 + ++ L+GL ++ +  G   S ALT  G VY WG+G++ 
Sbjct: 4139 VGVTAIMASLAEEVPMGARSPMKIESLAGLGVIKVECGSQFSVALTRSGSVYTWGKGDYH 4198

Query: 263  RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
            RLG G+ D   +  P+KV  L G+ I+ ++ G  H VA +  G +F++G  D G+LG G 
Sbjct: 4199 RLGHGNTDHVRR--PKKVAALQGKKIISIATGSLHCVACSDSGEVFTWGDNDEGQLGDGT 4256

Query: 323  KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
                 +P  V             +  + I K++ CG  HTLA+  +Q  E+
Sbjct: 4257 VTAIQRPRLV-----------QSLQGKHIVKVI-CGSAHTLALSTYQLSEA 4295



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 128/256 (50%), Gaps = 37/256 (14%)

Query: 128 QRCAPKLI-------VRQVAAG--GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
           +  APKL+       V Q+AA   G H++ L+  G V++WG         GD     VP 
Sbjct: 564 ETVAPKLVEGLEGVSVIQIAAHCEGRHAMALSSAGEVYSWGAGEGGRLGHGDTASKEVPT 623

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           ++   +QV  I  GA ++ A+   G L+ WG   YG+LG G++  +  P  VQ L    +
Sbjct: 624 KIALEKQVTAIYAGASYSAAVSSVGELFTWGRGTYGRLGHGNSDDKFVPTQVQALKAYKV 683

Query: 235 VDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           VD+A  +G  HS A+TD G ++ WG G+ G+LG G  + S    P  V +     + ++ 
Sbjct: 684 VDVALGSGDAHSMAVTDGGLLFAWGDGDFGKLGNGSCNGS----PLPVQIEGVSSVARIY 739

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG---VDRR 349
            G   SVAL+ DG ++S+G+G  GRLG+G    +        N+P   +A +G   VD  
Sbjct: 740 SGSQFSVALSYDGTLYSWGKGHGGRLGHGNSEHS--------NVPKLVHALEGKKIVD-- 789

Query: 350 WIAKLVACGGRHTLAI 365
                VA G  H LA+
Sbjct: 790 -----VAVGSAHCLAL 800



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 166  DIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            D  +I +P   + L  ++ I +  G     A+  DG L+A G    G+LG G T   S P
Sbjct: 3961 DGSRIKMPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGYGAGGRLGIGGTDSVSTP 4020

Query: 224  IPVQGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
              V+ L  + +  +A  +GG H  AL+ DGEV+ WG GE G+LG G+ D   +  P+ + 
Sbjct: 4021 TLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHGNRDSYDR--PKLIE 4078

Query: 282  LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
             L+G  +V ++CG  HS  +T  GH+ ++G+G +GRLG+G      QP    +       
Sbjct: 4079 ALSGIGVVDIACGSAHSACITSQGHVLTWGKGRYGRLGHGDSEDQLQPKRCVLRTTIMCG 4138

Query: 342  AGDGVDRRWIAKLVACGGRHTLAI 365
             G       +A+ V  G R  + I
Sbjct: 4139 VGVTAIMASLAEEVPMGARSPMKI 4162



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 28/220 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T ++ +P+++        + A  G  +  AV   G  + WG   YG+ G      DD 
Sbjct: 614 GDTASKEVPTKIALEKQVTAIYA--GASYSAAVSSVGELFTWGRGTYGRLGHG--NSDDK 669

Query: 117 GRILRRDIVIPQRC----APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI-- 170
                    +P +     A K++   + +G  HS+ +T  G ++ WG     GD  ++  
Sbjct: 670 --------FVPTQVQALKAYKVVDVALGSGDAHSMAVTDGGLLFAWGD----GDFGKLGN 717

Query: 171 ------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
                  +PV+++G+  V  I  G+  ++AL  DG L++WG    G+LG G+++  + P 
Sbjct: 718 GSCNGSPLPVQIEGVSSVARIYSGSQFSVALSYDGTLYSWGKGHGGRLGHGNSEHSNVPK 777

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            V  L G  +VD+A G  H  ALT  GE+YGWGR ++ ++
Sbjct: 778 LVHALEGKKIVDVAVGSAHCLALTSSGELYGWGRNDYQQI 817



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 46/241 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S   + +WG+GE G+LG G+   +E V    ALE  +V ++ AG+  S A+   G+  
Sbjct: 594 LSSAGEVYSWGAGEGGRLGHGDTASKE-VPTKIALEK-QVTAIYAGASYSAAVSSVGELF 651

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
           T                + +P+QV AL   K+V  A+G    H +AV D G  +AWG  +
Sbjct: 652 TWGRGTYGRLGHGNSDDKFVPTQVQALKAYKVVDVALGSGDAHSMAVTDGGLLFAWGDGD 711

Query: 103 YGQ-----CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           +G+     C   P               +P +      V ++ +G   SV L+ +G +++
Sbjct: 712 FGKLGNGSCNGSP---------------LPVQIEGVSSVARIYSGSQFSVALSYDGTLYS 756

Query: 158 WGQ----PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQ 211
           WG+        G+ +  +VP  V  LE  K+  +AVG+ H LAL   G L+ WG N+Y Q
Sbjct: 757 WGKGHGGRLGHGNSEHSNVPKLVHALEGKKIVDVAVGSAHCLALTSSGELYGWGRNDYQQ 816

Query: 212 L 212
           +
Sbjct: 817 I 817



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
              ++ WG+N  GQLG  D      P P + LS L  + IA G     A+T DG++Y  G 
Sbjct: 3944 STIFGWGHNHRGQLGGLDGSRIKMPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGY 4003

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGDHG 316
            G  GRLG G  D  S   P  V  L    I  V V+ GG H +AL+ DG +FS+G G+ G
Sbjct: 4004 GAGGRLGIGGTDSVS--TPTLVESLQHVIIKKVAVNSGGKHCLALSSDGEVFSWGEGEDG 4061

Query: 317  RLGYGRKVTTGQP 329
            +LG+G + +  +P
Sbjct: 4062 KLGHGNRDSYDRP 4074



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 72/264 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
            + S+  +  WG GE G+LG G+N  +    +V AL+ ++V  V  GSR++  +C      
Sbjct: 3061 ITSSGELYTWGLGEYGRLGHGDNCTQLKPKLVTALQGHRVVQVACGSRDAQTLCLTEEGL 3120

Query: 55   -------DDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                   D GK     ++  ++P QV  L+   +VQ   G    LA+   G  + WG  +
Sbjct: 3121 VFSWGDGDFGKLGRGGSEGCSVPHQVERLNGVGVVQIECGAQFSLALTKIGEVWTWGKGD 3180

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            Y + G        T + +R+   I      K+I   VA G  H + +T  G V+ W    
Sbjct: 3181 YYRLGH------GTDQHVRKPTPIQGLRGKKVI--HVAVGALHCLAVTDSGQVFAW---- 3228

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                                                      G+N++GQ G+G+T    +
Sbjct: 3229 ------------------------------------------GDNDHGQQGSGNTVVNKK 3246

Query: 223  PIPVQGLSGLTLVDIAAGGWHSTA 246
            P  V GL G+ +  +A G  HS A
Sbjct: 3247 PNLVLGLDGVFVNRVACGSSHSVA 3270



 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
             +V  WG  +  +LG     K SK+ +P   ++L+    + +S G      +++DG +++
Sbjct: 2907 SKVLVWGLNDKEQLG---GLKGSKVKLPTYSSVLSQLKPIHISGGSKSLFIVSQDGKLYA 2963

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC--GGRHTLAI 365
             G G +GRLG G       P +VPI              +++ K VA   GG+H +A+
Sbjct: 2964 CGEGTNGRLGLGHNNNVPTPRQVPIL------------NQYVVKKVAVHSGGKHAMAL 3009


>gi|224011731|ref|XP_002295640.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583671|gb|ACI64357.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 277

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 143/308 (46%), Gaps = 56/308 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WG GEDGQLGIG+                                    T  ++ P+
Sbjct: 1   VFSWGRGEDGQLGIGD------------------------------------TSDQDEPT 24

Query: 67  QVNALSNTKIV-QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
            V+AL    I+     G +H  AV   G  Y WGG  YG+ G   E    T R  R + +
Sbjct: 25  YVDALRGVGIITHVTCGSYHTAAVASNGDLYTWGGGMYGKLGHGNESGHSTPR--RVEAL 82

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQISVPVRVQ 177
           +       L +  +A G  H+ V+T +G ++TWG             G      +  R+ 
Sbjct: 83  VG------LSIVDIACGSRHTAVVTSKGCLYTWGDKENGVAGHGDTEGHQYTPKLLERLN 136

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           G + V+L A G FH   L +D   +AWG  ++G+LG G  +    P  ++ L G     +
Sbjct: 137 GKKVVQLSACG-FHTACLTDDHETFAWGEGKFGRLGNGTERNCHSPRLIESLIGKYPCQV 195

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A GG+HS  +T DG++Y +G GEHG+LG    DK +K+ P  V  L G  + Q++CG +H
Sbjct: 196 ACGGFHSAVITRDGKMYTFGGGEHGQLGHA--DKVNKLKPTLVEALDGVVVKQITCGWSH 253

Query: 298 SVALTRDG 305
           SVALT +G
Sbjct: 254 SVALTSEG 261



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL--IAVG 188
           I+  V  G  H+  +   G ++TWG         G+    S P RV+ L  + +  IA G
Sbjct: 34  IITHVTCGSYHTAAVASNGDLYTWGGGMYGKLGHGNESGHSTPRRVEALVGLSIVDIACG 93

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           + H   +   G L+ WG+ E G  G GDT+  +  P  ++ L+G  +V ++A G+H+  L
Sbjct: 94  SRHTAVVTSKGCLYTWGDKENGVAGHGDTEGHQYTPKLLERLNGKKVVQLSACGFHTACL 153

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           TDD E + WG G+ GRLG G         P+ +  L G+   QV+CGG HS  +TRDG +
Sbjct: 154 TDDHETFAWGEGKFGRLGNGTERNCHS--PRLIESLIGKYPCQVACGGFHSAVITRDGKM 211

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++FG G+HG+LG+  KV   +P  V         A DGV    + K + CG  H++A+ 
Sbjct: 212 YTFGGGEHGQLGHADKVNKLKPTLV--------EALDGV----VVKQITCGWSHSVALT 258



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 33/223 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +AS   +  WG G  G+LG GN         V+AL    +  +  GSR++  +   G   
Sbjct: 48  VASNGDLYTWGGGMYGKLGHGNESGHSTPRRVEALVGLSIVDIACGSRHTAVVTSKGCLY 107

Query: 61  T-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
           T                 +  P  +  L+  K+VQ +  G+H   + D    +AWG  ++
Sbjct: 108 TWGDKENGVAGHGDTEGHQYTPKLLERLNGKKVVQLSACGFHTACLTDDHETFAWGEGKF 167

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW----- 158
           G+ G   ER   + R++   ++    C       QVA GG HS V+TR+G ++T+     
Sbjct: 168 GRLGNGTERNCHSPRLI-ESLIGKYPC-------QVACGGFHSAVITRDGKMYTFGGGEH 219

Query: 159 GQPWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDG 199
           GQ      + ++  P  V+ L+   VK I  G  H++AL  +G
Sbjct: 220 GQLGHADKVNKLK-PTLVEALDGVVVKQITCGWSHSVALTSEG 261


>gi|322795632|gb|EFZ18311.1| hypothetical protein SINV_02346 [Solenopsis invicta]
          Length = 3628

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 32/314 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            +P     LS  K +  A G      V  +G+ YA G    G+ G      DD      + 
Sbjct: 2612 LPIYSEVLSKLKPIHIAGGSKTLFIVSQEGKLYACGEGTNGRLG----LGDDNNVCEPKA 2667

Query: 124  IVIPQRCAPKLIVRQVA--AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
            I        + ++++VA  +GG H++ LT++G V++WG+        G+   +  P  ++
Sbjct: 2668 IPF----LSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGEDGKLGHGNCISLDKPKLIE 2723

Query: 178  GLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
             L+  +++ IA G+ H+ A+  +G L+ WG  EYG+LG GDT  +++P  VQ L G  +V
Sbjct: 2724 ILKSKRIRDIACGSGHSAAIASNGELYTWGLGEYGRLGHGDTITQTRPKLVQALVGQRVV 2783

Query: 236  DIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
             +A G     + ALT DG VY WG G+ G+LG G +D      P  V+ L G  ++QV C
Sbjct: 2784 QVACGSRDAQTMALTTDGCVYSWGDGDFGKLGRGGSDGC--YTPLAVDRLNGLGVIQVEC 2841

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   S+ALT+ G ++++G+GD+ RLG+G      +P  V           +G+  + I  
Sbjct: 2842 GAQFSLALTKYGEVWTWGKGDYFRLGHGNDHHVRKPTLV-----------EGLRGKKIIH 2890

Query: 354  LVACGGRHTLAIVE 367
             VA G  H LA+ +
Sbjct: 2891 -VAVGALHCLAVTD 2903



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 142/289 (49%), Gaps = 36/289 (12%)

Query: 92   QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP--QRCAPKLIVRQVAAGGTHSVVL 149
            Q   Y WG N+          KD  G +    I +P       KL    +A G     ++
Sbjct: 2588 QSAVYVWGLND----------KDQLGGLKGSKIKLPIYSEVLSKLKPIHIAGGSKTLFIV 2637

Query: 150  TREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
            ++EG ++  G+        GD   +  P  +  L Q  +K +AV  G  H LAL +DG +
Sbjct: 2638 SQEGKLYACGEGTNGRLGLGDDNNVCEPKAIPFLSQFVIKKVAVHSGGKHALALTQDGKV 2697

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            ++WG  E G+LG G+     +P  ++ L    + DIA G  HS A+  +GE+Y WG GE+
Sbjct: 2698 FSWGEGEDGKLGHGNCISLDKPKLIEILKSKRIRDIACGSGHSAAIASNGELYTWGLGEY 2757

Query: 262  GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
            GRLG GD    ++  P+ V  L G+ +VQV+CG     ++ALT DG ++S+G GD G+LG
Sbjct: 2758 GRLGHGDTITQTR--PKLVQALVGQRVVQVACGSRDAQTMALTTDGCVYSWGDGDFGKLG 2815

Query: 320  YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
             G       P+ V       R  G GV +      V CG + +LA+ ++
Sbjct: 2816 RGGSDGCYTPLAV------DRLNGLGVIQ------VECGAQFSLALTKY 2852



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 52/328 (15%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV------AGSRNSLAICDDGKTK 60
            + A G G +G+LG+G++     VC  KA+ P+  + V+      +G +++LA+  DGK  
Sbjct: 2643 LYACGEGTNGRLGLGDDNN---VCEPKAI-PFLSQFVIKKVAVHSGGKHALALTQDGKVF 2698

Query: 61   T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            +                 + P  +  L + +I   A G  H  A+   G  Y WG  EYG
Sbjct: 2699 SWGEGEDGKLGHGNCISLDKPKLIEILKSKRIRDIACGSGHSAAIASNGELYTWGLGEYG 2758

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLTREGHVWTWGQPW 162
            + G          ++++   ++ QR      V QVA G     ++ LT +G V++WG   
Sbjct: 2759 RLGHGDTITQTRPKLVQA--LVGQR------VVQVACGSRDAQTMALTTDGCVYSWGD-- 2808

Query: 163  PPGDIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQL 212
              GD  ++          P+ V  L  + +I V  GA  +LAL + G +W WG  +Y +L
Sbjct: 2809 --GDFGKLGRGGSDGCYTPLAVDRLNGLGVIQVECGAQFSLALTKYGEVWTWGKGDYFRL 2866

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
            G G+     +P  V+GL G  ++ +A G  H  A+TD G+VY WG  +HG+ G G    +
Sbjct: 2867 GHGNDHHVRKPTLVEGLRGKKIIHVAVGALHCLAVTDTGQVYAWGDNDHGQQGNGATSVN 2926

Query: 273  SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             K  P  V+ L    + +VSCG +HS+A
Sbjct: 2927 RK--PSLVHDLEDARVNRVSCGSSHSIA 2952



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 16/203 (7%)

Query: 127 PQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKL 184
           P  C P   L ++Q+       ++L+  G+ +            +   P+RV G     +
Sbjct: 94  PFYCDPIAGLGIKQLCCTERSLMILSLNGNAYNMYHG------SETQYPLRVHGFSDKPI 147

Query: 185 IAVGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
             + +     H LAL +DG +++WGN + G+LG GDT    +P  ++ L    +V IA G
Sbjct: 148 TMIASHADGKHYLALTQDGCVYSWGNGDGGRLGHGDTVSYDEPKLIESLLDKNIVFIACG 207

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THS 298
             +S AL+  GE+Y WGRG +GRLG G+ D    + P  V  L G  +V V+CG   + +
Sbjct: 208 STYSAALSASGELYTWGRGNYGRLGHGNFDDV--LTPTLVTTLKGHTVVHVACGSGDSQT 265

Query: 299 VALTRDGHIFSFGRGDHGRLGYG 321
           + +T  G +FS+G GD+G+LG G
Sbjct: 266 LCVTASGIVFSWGDGDYGKLGRG 288



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 34/286 (11%)

Query: 65  PSQVNALSNTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD 115
           P +V+  S+  I   A    G H LA+   G  Y+WG  + G+ G       +EP+  + 
Sbjct: 136 PLRVHGFSDKPITMIASHADGKHYLALTQDGCVYSWGNGDGGRLGHGDTVSYDEPKLIES 195

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              +L ++IV             +A G T+S  L+  G ++TWG+        G+   + 
Sbjct: 196 ---LLDKNIVF------------IACGSTYSAALSASGELYTWGRGNYGRLGHGNFDDVL 240

Query: 172 VPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            P  V  L+   ++ V    G    L +   G +++WG+ +YG+LG G T     P  V 
Sbjct: 241 TPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGRGGTDGSKTPKIVD 300

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L  + +V +  GG  S ALT  GEVY WG+G+  RLG G  +      P+ +  L  + 
Sbjct: 301 KLLDINVVKVFCGGQFSAALTAHGEVYTWGKGDAYRLGHGSEEHVR--YPKVIESLRDKK 358

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           I  +S G TH +ALT D  ++ +GR D+G++         +P   P
Sbjct: 359 IKDLSVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPVVSEPTLCP 404



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 22/237 (9%)

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLA 194
           A G H + LT++G V++WG         GD      P  ++ L  + +  IA G+ ++ A
Sbjct: 154 ADGKHYLALTQDGCVYSWGNGDGGRLGHGDTVSYDEPKLIESLLDKNIVFIACGSTYSAA 213

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL--TDDGE 252
           L   G L+ WG   YG+LG G+      P  V  L G T+V +A G   S  L  T  G 
Sbjct: 214 LSASGELYTWGRGNYGRLGHGNFDDVLTPTLVTTLKGHTVVHVACGSGDSQTLCVTASGI 273

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG G++G+LG G  D S    P+ V+ L   ++V+V CGG  S ALT  G ++++G+
Sbjct: 274 VFSWGDGDYGKLGRGGTDGSK--TPKIVDKLLDINVVKVFCGGQFSAALTAHGEVYTWGK 331

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           GD  RLG+G +    + +  P  I + R      D++   K ++ G  H LA+ E Q
Sbjct: 332 GDAYRLGHGSE----EHVRYPKVIESLR------DKK--IKDLSVGTTHILALTEDQ 376



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +  A++ WG N+  QLG         PI  + LS L  + IA G      ++ +G++Y  
Sbjct: 2587 QQSAVYVWGLNDKDQLGGLKGSKIKLPIYSEVLSKLKPIHIAGGSKTLFIVSQEGKLYAC 2646

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRGD 314
            G G +GRLG GD++   +  P+ +  L+   I  V V  GG H++ALT+DG +FS+G G+
Sbjct: 2647 GEGTNGRLGLGDDNNVCE--PKAIPFLSQFVIKKVAVHSGGKHALALTQDGKVFSWGEGE 2704

Query: 315  HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG+G  ++  +P  + I + + R            + +ACG  H+ AI
Sbjct: 2705 DGKLGHGNCISLDKPKLIEI-LKSKR-----------IRDIACGSGHSAAI 2743



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 32/264 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG+G+ G+LG G+    +   ++++L    +  +  GS  S A+   G+  T     
Sbjct: 168 VYSWGNGDGGRLGHGDTVSYDEPKLIESLLDKNIVFIACGSTYSAALSASGELYTWGRGN 227

Query: 62  ---------ENI--PSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGE 108
                    +++  P+ V  L    +V  A G      L V   G  ++WG  +YG+ G 
Sbjct: 228 YGRLGHGNFDDVLTPTLVTTLKGHTVVHVACGSGDSQTLCVTASGIVFSWGDGDYGKLGR 287

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T +I+ + + I         V +V  GG  S  LT  G V+TWG+        
Sbjct: 288 GGTDGSKTPKIVDKLLDIN--------VVKVFCGGQFSAALTAHGEVYTWGKGDAYRLGH 339

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G  + +  P  ++ L  +++K ++VG  H LAL ED  ++ WG N+YGQ+        S+
Sbjct: 340 GSEEHVRYPKVIESLRDKKIKDLSVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPVVSE 399

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTA 246
           P     LS  T++ +A+G   S A
Sbjct: 400 PTLCPTLSSKTVIGLASGPTQSFA 423



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 26/256 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T + + P  + +L +  IV  A G  +  A+   G  Y WG   YG+ G      DD 
Sbjct: 182 GDTVSYDEPKLIESLLDKNIVFIACGSTYSAALSASGELYTWGRGNYGRLGH--GNFDD- 238

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
             +L   +V   +    ++     +G + ++ +T  G V++WG     GD  ++      
Sbjct: 239 --VLTPTLVTTLK-GHTVVHVACGSGDSQTLCVTASGIVFSWGD----GDYGKLGRGGTD 291

Query: 171 --SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
               P  V  L  + ++ V  G   + AL   G ++ WG  +  +LG G  +    P  +
Sbjct: 292 GSKTPKIVDKLLDINVVKVFCGGQFSAALTAHGEVYTWGKGDAYRLGHGSEEHVRYPKVI 351

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGDNDKSSKMVPQKVNLLA 284
           + L    + D++ G  H  ALT+D  VYGWGR ++G++    G       + P     L+
Sbjct: 352 ESLRDKKIKDLSVGTTHILALTEDQFVYGWGRNDYGQIDPTLGPVVSEPTLCPT----LS 407

Query: 285 GEDIVQVSCGGTHSVA 300
            + ++ ++ G T S A
Sbjct: 408 SKTVIGLASGPTQSFA 423



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 26/177 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            +AS   +  WG GE G+LG G+   +    +V+AL   +V  V  GSR+  ++A+  DG 
Sbjct: 2743 IASNGELYTWGLGEYGRLGHGDTITQTRPKLVQALVGQRVVQVACGSRDAQTMALTTDGC 2802

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                   P  V+ L+   ++Q   G    LA+   G  + WG  +
Sbjct: 2803 VYSWGDGDFGKLGRGGSDGCYTPLAVDRLNGLGVIQVECGAQFSLALTKYGEVWTWGKGD 2862

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            Y + G   +        +R+  ++      K+I   VA G  H + +T  G V+ WG
Sbjct: 2863 YFRLGHGNDHH------VRKPTLVEGLRGKKII--HVAVGALHCLAVTDTGQVYAWG 2911



 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 34/167 (20%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           + AWG  ++G          S P     ++GL +  +         L+ +G  Y    G 
Sbjct: 80  VLAWGGVKFGN--------GSTPFYCDPIAGLGIKQLCCTERSLMILSLNGNAYNMYHG- 130

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS--CGGTHSVALTRDGHIFSFGRGDHGRL 318
                      S    P +V+  + + I  ++    G H +ALT+DG ++S+G GD GRL
Sbjct: 131 -----------SETQYPLRVHGFSDKPITMIASHADGKHYLALTQDGCVYSWGNGDGGRL 179

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+G  V+  +P  +             +D+  +   +ACG  ++ A+
Sbjct: 180 GHGDTVSYDEPKLIE----------SLLDKNIV--FIACGSTYSAAL 214



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 199  GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            GA++ WG+N  GQLG  +      P P + LS L  + +A G     A+T DG+VY  G
Sbjct: 3570 GAIYGWGHNHRGQLGGLEGPKVKLPAPCESLSALRPIQLAGGEQTLFAVTADGKVYSTG 3628


>gi|159037340|ref|YP_001536593.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916175|gb|ABV97602.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 563

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 142/326 (43%), Gaps = 35/326 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S ++++AWG    GQLG G    R     V       + ++ AG  +SLA+       
Sbjct: 109 VTSASTMLAWGFNTWGQLGDGTTTNRNTPVAVDLPTGTTITAIAAGKSHSLAVTSAGTML 168

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   N P  V+  + T I   A G  H LA+   G   AWG N +G
Sbjct: 169 AWGLNSAGQLGDGTTTNRNTPVAVDLPTGTTITAIAAGNGHSLALTSAGTMLAWGENTWG 228

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
           Q G+        G    R+  +         +  +A GG HS+ +T  G +  WG  +  
Sbjct: 229 QLGD--------GTTTNRNTPVTVDLPTGTTITALAGGGGHSLAVTSTGTMLAWGFNFWG 280

Query: 163 --PPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               G     + PV V    G     +   G  H+LA    G + AWG N +GQLG G T
Sbjct: 281 QLGDGTTTNRNTPVAVDLPTGTTITAIAGGGGGHSLAATSTGTMLAWGLNSFGQLGDGTT 340

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
             RS P+ V   +G T+  IAAGG   HS A T  G +  WG    G+L  GD   S++ 
Sbjct: 341 SNRSTPVTVDLPAGTTITAIAAGGGSGHSLAATSTGTMLAWGANTLGQL--GDGTTSNRS 398

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVAL 301
            P  V+L AG  I  V+ GG HS+A+
Sbjct: 399 TPVTVDLPAGTTITAVTAGGFHSLAI 424



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 162/385 (42%), Gaps = 48/385 (12%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR-NSLAICD----------- 55
           +AWG    GQLG G    R     V       + ++ AG   +SLA+             
Sbjct: 63  LAWGFNALGQLGDGTTTNRNTPVTVDLPADTTITAIAAGVNGHSLAVTSASTMLAWGFNT 122

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T   N P  V+  + T I   A G  H LAV   G   AWG N  GQ G+  
Sbjct: 123 WGQLGDGTTTNRNTPVAVDLPTGTTITAIAAGKSHSLAVTSAGTMLAWGLNSAGQLGD-- 180

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-PW---PPGD 166
                 G    R+  +         +  +AAG  HS+ LT  G +  WG+  W     G 
Sbjct: 181 ------GTTTNRNTPVAVDLPTGTTITAIAAGNGHSLALTSAGTMLAWGENTWGQLGDGT 234

Query: 167 IKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               + PV V       + A+  G  H+LA+   G + AWG N +GQLG G T  R+ P+
Sbjct: 235 TTNRNTPVTVDLPTGTTITALAGGGGHSLAVTSTGTMLAWGFNFWGQLGDGTTTNRNTPV 294

Query: 225 PVQ-GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            V              GG HS A T  G +  WG    G+L  GD   S++  P  V+L 
Sbjct: 295 AVDLPTGTTITAIAGGGGGHSLAATSTGTMLAWGLNSFGQL--GDGTTSNRSTPVTVDLP 352

Query: 284 AGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           AG  I  ++ GG   HS+A T  G + ++G    G+LG G   T+ +   V +++P    
Sbjct: 353 AGTTITAIAAGGGSGHSLAATSTGTMLAWGANTLGQLGDG--TTSNRSTPVTVDLP---- 406

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIV 366
           AG  +        V  GG H+LAIV
Sbjct: 407 AGTTITA------VTAGGFHSLAIV 425



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 114/254 (44%), Gaps = 21/254 (8%)

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-GTHS 146
           A    G   AWG N  GQ G+        G    R+  +         +  +AAG   HS
Sbjct: 55  AAGTPGTGLAWGFNALGQLGD--------GTTTNRNTPVTVDLPADTTITAIAAGVNGHS 106

Query: 147 VVLTREGHVWTWG-QPWPPGDI-------KQISVPVRVQGLEQVKLIAVGAFHNLALQED 198
           + +T    +  WG   W  G +       +   V V +     +  IA G  H+LA+   
Sbjct: 107 LAVTSASTMLAWGFNTW--GQLGDGTTTNRNTPVAVDLPTGTTITAIAAGKSHSLAVTSA 164

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G + AWG N  GQLG G T  R+ P+ V   +G T+  IAAG  HS ALT  G +  WG 
Sbjct: 165 GTMLAWGLNSAGQLGDGTTTNRNTPVAVDLPTGTTITAIAAGNGHSLALTSAGTMLAWGE 224

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              G+L  GD   +++  P  V+L  G  I  ++ GG HS+A+T  G + ++G    G+L
Sbjct: 225 NTWGQL--GDGTTTNRNTPVTVDLPTGTTITALAGGGGHSLAVTSTGTMLAWGFNFWGQL 282

Query: 319 GYGRKVTTGQPMEV 332
           G G       P+ V
Sbjct: 283 GDGTTTNRNTPVAV 296


>gi|386723136|ref|YP_006189462.1| BNR repeat-containing protein [Paenibacillus mucilaginosus K02]
 gi|384090261|gb|AFH61697.1| BNR repeat domain-containing protein [Paenibacillus mucilaginosus
           K02]
          Length = 686

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 158/351 (45%), Gaps = 38/351 (10%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           W  G+D  LG G          VK LE  +V +V AG  +SLA+  DG            
Sbjct: 56  WAWGKD-SLGNGTPYSSATPVQVKDLE--EVVTVAAGGNHSLALKSDGTVWAWGQNEYGV 112

Query: 58  ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 KT     P QV  LS+   + A     H LA+   G  +AWG N  GQ G    
Sbjct: 113 LGEDPYKTSWRLTPVQVQGLSSVVAISANFS--HNLALKSDGTVWAWGMNNAGQLG---- 166

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
             + T   +      P +      V  VAAG   S+ L  +G +W WG     G  +  S
Sbjct: 167 --NGTTSDMYTSFYTPSQVQGLDSVIAVAAGPGTSLALKSDGTLWAWGGLVGDGTTESRS 224

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+ QGL  V     G      ++ DG +WAWG N YGQLG G T  R  P+P+Q LS 
Sbjct: 225 TPVQAQGLSSVVSFDAGD-SRFVVKSDGTVWAWGWNGYGQLGDGTTTTRYTPVPLQELS- 282

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
            ++   AA  WHS AL  DG V+ WG    G + +  + +++ +  Q ++       V +
Sbjct: 283 -SVAAFAADEWHSLALKSDGTVWEWGCNSKGEMCYESDIRTTPVQVQDLS-----SAVDI 336

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRN 341
           + G  HS+A+  DG ++++G   +G++G   +     P++V  +  P+P  
Sbjct: 337 AAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTYHSTPIQVLGLGEPSPNT 387



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 17/224 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ-PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V  VAAG  HS+ L  +G VW WG+     G     + PV+V+ LE+V  +A G  H+LA
Sbjct: 36  VTMVAAGRFHSLALKEDGTVWAWGKDSLGNGTPYSSATPVQVKDLEEVVTVAAGGNHSLA 95

Query: 195 LQEDGALWAWGNNEYGQLGTG--DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           L+ DG +WAWG NEYG LG     T  R  P+ VQGLS  ++V I+A   H+ AL  DG 
Sbjct: 96  LKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLS--SVVAISANFSHNLALKSDGT 153

Query: 253 VYGWGRGEHGRLGFGDNDK--SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           V+ WG    G+LG G      +S   P +V  L  + ++ V+ G   S+AL  DG ++++
Sbjct: 154 VWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGL--DSVIAVAAGPGTSLALKSDGTLWAW 211

Query: 311 GRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVDRRWIAK 353
           G    G +G G   +   P++   ++     +AG   D R++ K
Sbjct: 212 G----GLVGDGTTESRSTPVQAQGLSSVVSFDAG---DSRFVVK 248



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 123/271 (45%), Gaps = 34/271 (12%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S + +   A G +H LA+ + G  +AWG             KD  G         P +  
Sbjct: 32  SKSGVTMVAAGRFHSLALKEDGTVWAWG-------------KDSLGNGTPYSSATPVQVK 78

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLI 185
               V  VAAGG HS+ L  +G VW WGQ         P        PV+VQGL  V  I
Sbjct: 79  DLEEVVTVAAGGNHSLALKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLSSVVAI 138

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ----PRSQPIPVQGLSGLTLVDIAAGG 241
           +    HNLAL+ DG +WAWG N  GQLG G T         P  VQGL   +++ +AAG 
Sbjct: 139 SANFSHNLALKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLD--SVIAVAAGP 196

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             S AL  DG ++ WG    G +  GD    S+  P +   L+   +V    G +  V +
Sbjct: 197 GTSLALKSDGTLWAWG----GLV--GDGTTESRSTPVQAQGLS--SVVSFDAGDSRFV-V 247

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             DG ++++G   +G+LG G   T   P+ +
Sbjct: 248 KSDGTVWAWGWNGYGQLGDGTTTTRYTPVPL 278



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 108/252 (42%), Gaps = 42/252 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAI- 53
           + S  ++ AWG    GQLG G   +           P +V+      +V AG   SLA+ 
Sbjct: 148 LKSDGTVWAWGMNNAGQLGNGTTSD----MYTSFYTPSQVQGLDSVIAVAAGPGTSLALK 203

Query: 54  -----------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                        DG T++ + P Q   LS+     A   G     V   G  +AWG N 
Sbjct: 204 SDGTLWAWGGLVGDGTTESRSTPVQAQGLSSVVSFDA---GDSRFVVKSDGTVWAWGWNG 260

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--- 159
           YGQ G+        G    R   +P +      V   AA   HS+ L  +G VW WG   
Sbjct: 261 YGQLGD--------GTTTTRYTPVPLQELSS--VAAFAADEWHSLALKSDGTVWEWGCNS 310

Query: 160 --QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
             +     DI+  + PV+VQ L     IA G  H+LA++ DG +WAWGNN YGQ+G    
Sbjct: 311 KGEMCYESDIR--TTPVQVQDLSSAVDIAAGFEHSLAVKSDGTVWAWGNNGYGQMGDAAR 368

Query: 218 QPRSQPIPVQGL 229
              S PI V GL
Sbjct: 369 TYHSTPIQVLGL 380


>gi|379720536|ref|YP_005312667.1| BNR repeat-containing protein [Paenibacillus mucilaginosus 3016]
 gi|378569208|gb|AFC29518.1| BNR repeat domain-containing protein [Paenibacillus mucilaginosus
           3016]
          Length = 686

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 154/341 (45%), Gaps = 37/341 (10%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           W  G+D  LG G          VK LE  +V +V AG  +SLA+  DG            
Sbjct: 56  WAWGKD-SLGNGTPYSSATPVQVKDLE--EVVTVAAGGNHSLALKSDGTVWAWGQNEYGV 112

Query: 58  ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 KT     P QV  LS+   + A     H LA+   G  +AWG N  GQ G    
Sbjct: 113 LGEDPYKTSWRLTPVQVQGLSSVVAISANFS--HNLALKSDGTVWAWGMNNAGQLG---- 166

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
             + T   +      P +      V  VAAG   S+ L  +G +W WG     G  +  S
Sbjct: 167 --NGTTSDMYTSFYTPSQVQGLDSVIAVAAGPGTSLALKSDGTLWAWGGLVGDGTTESRS 224

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+ QGL  V     G      ++ DG +WAWG N YGQLG G T  R  P+P+Q LS 
Sbjct: 225 TPVQAQGLSSVVSFDAGD-SRFVVKSDGTVWAWGWNGYGQLGDGTTTTRYTPVPLQELS- 282

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
            ++   AA  WHS AL  DG V+ WG    G + +  + +++ +  Q ++       V +
Sbjct: 283 -SVAAFAADEWHSLALKSDGTVWEWGCNSKGEMCYESDIRTTPVQVQDLS-----SAVDI 336

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + G  HS+A+  DG ++++G   +G++G   +     P++V
Sbjct: 337 AAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTYHSTPIQV 377



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 17/224 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ-PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V  VAAG  HS+ L  +G VW WG+     G     + PV+V+ LE+V  +A G  H+LA
Sbjct: 36  VTMVAAGRFHSLALKEDGTVWAWGKDSLGNGTPYSSATPVQVKDLEEVVTVAAGGNHSLA 95

Query: 195 LQEDGALWAWGNNEYGQLGTG--DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           L+ DG +WAWG NEYG LG     T  R  P+ VQGLS  ++V I+A   H+ AL  DG 
Sbjct: 96  LKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLS--SVVAISANFSHNLALKSDGT 153

Query: 253 VYGWGRGEHGRLGFGDNDK--SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           V+ WG    G+LG G      +S   P +V  L  + ++ V+ G   S+AL  DG ++++
Sbjct: 154 VWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGL--DSVIAVAAGPGTSLALKSDGTLWAW 211

Query: 311 GRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVDRRWIAK 353
           G    G +G G   +   P++   ++     +AG   D R++ K
Sbjct: 212 G----GLVGDGTTESRSTPVQAQGLSSVVSFDAG---DSRFVVK 248



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 123/271 (45%), Gaps = 34/271 (12%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S + +   A G +H LA+ + G  +AWG             KD  G         P +  
Sbjct: 32  SKSGVTMVAAGRFHSLALKEDGTVWAWG-------------KDSLGNGTPYSSATPVQVK 78

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLI 185
               V  VAAGG HS+ L  +G VW WGQ         P        PV+VQGL  V  I
Sbjct: 79  DLEEVVTVAAGGNHSLALKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLSSVVAI 138

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ----PRSQPIPVQGLSGLTLVDIAAGG 241
           +    HNLAL+ DG +WAWG N  GQLG G T         P  VQGL   +++ +AAG 
Sbjct: 139 SANFSHNLALKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLD--SVIAVAAGP 196

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             S AL  DG ++ WG    G +  GD    S+  P +   L+   +V    G +  V +
Sbjct: 197 GTSLALKSDGTLWAWG----GLV--GDGTTESRSTPVQAQGLS--SVVSFDAGDSRFV-V 247

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             DG ++++G   +G+LG G   T   P+ +
Sbjct: 248 KSDGTVWAWGWNGYGQLGDGTTTTRYTPVPL 278



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 109/250 (43%), Gaps = 38/250 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCV----VKALEPYKVRSVVAGSRNSLAI--- 53
           + S  ++ AWG    GQLG G   +          V+ L+   V +V AG   SLA+   
Sbjct: 148 LKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLD--SVIAVAAGPGTSLALKSD 205

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T++ + P Q   LS+     A   G     V   G  +AWG N YG
Sbjct: 206 GTLWAWGGLVGDGTTESRSTPVQAQGLSSVVSFDA---GDSRFVVKSDGTVWAWGWNGYG 262

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----- 159
           Q G+        G    R   +P +      V   AA   HS+ L  +G VW WG     
Sbjct: 263 QLGD--------GTTTTRYTPVPLQELSS--VAAFAADEWHSLALKSDGTVWEWGCNSKG 312

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           +     DI+  + PV+VQ L     IA G  H+LA++ DG +WAWGNN YGQ+G      
Sbjct: 313 EMCYESDIR--TTPVQVQDLSSAVDIAAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTY 370

Query: 220 RSQPIPVQGL 229
            S PI V GL
Sbjct: 371 HSTPIQVLGL 380


>gi|219847606|ref|YP_002462039.1| chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM
           9485]
 gi|219541865|gb|ACL23603.1| regulator of chromosome condensation RCC1 [Chloroflexus aggregans
           DSM 9485]
          Length = 784

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 143/315 (45%), Gaps = 34/315 (10%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG     + P  V+ L +  +   A GG H  A+   G    WGGN +GQ G+       
Sbjct: 94  DGSYTDRSTPVAVSGLPS-GVTAIAAGGAHTCALTSSGGVMCWGGNYFGQLGD------- 145

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--GDIKQIS-- 171
            G    R   +     P   V  +AAGG H+  L   G VW WG       GD   I   
Sbjct: 146 -GSYTDRSTPVAVSGLPSG-VTAIAAGGAHTCALMSSGGVWCWGYNLSGQLGDGSTIYHI 203

Query: 172 VPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL- 229
            PV V GL  +V  IA G  H  AL   G +W WG+N +GQLG G     S P  V GL 
Sbjct: 204 TPVAVSGLPSEVTAIAAGYAHTCALTGSGGVWCWGDNGFGQLGDGSFTDSSTPAAVGGLP 263

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           SG+T   IAAGG ++ ALT  G V+ WGR + G+L  GD   +++  P  V  L    + 
Sbjct: 264 SGVTA--IAAGGRYTCALTSSGGVWCWGRNDSGQL--GDGSFTNRSTPGAVGGLP-SGVT 318

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            ++ GG H+ ALT  G ++ +G  D G+LG G       P  V   +P+   A       
Sbjct: 319 AIAAGGAHTCALTSSGGVWCWGGNDSGQLGDGSYTDRSTPGAVS-GLPSGVTA------- 370

Query: 350 WIAKLVACGGRHTLA 364
                +A GG HT A
Sbjct: 371 -----IAAGGAHTCA 380



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 154/352 (43%), Gaps = 38/352 (10%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------- 55
           S+  +  WG    GQLG G   +R     V  L P  V ++ AG+ ++ A+         
Sbjct: 383 SSGGVWCWGGNFYGQLGDGTTTDRSTPGAVSGL-PSGVTAIAAGNYHTCALTGSDGVWCW 441

Query: 56  ---------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG T   + P  V+ L +  +   A G +H  A+   G  + WG N+ GQ 
Sbjct: 442 GDNFYGQLGDGTTTNRSTPGAVSGLPS-GVTAIAAGNYHTCALTSSGGVWCWGRNDSGQL 500

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPW 162
           G+       T   +     +P        V  +AAG  H+  L   G VW WG       
Sbjct: 501 GDGTTTNRSTPGAVGG---LPSG------VTAIAAGDYHTCALMSSGGVWCWGLNNRGQL 551

Query: 163 PPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             G     S PV V GL   V  IA G +H  AL     +W WG N  GQLG G T  RS
Sbjct: 552 GDGSYTDSSTPVAVGGLPSGVMAIAAGNYHTCALTGSDGVWCWGTNSDGQLGDGTTTNRS 611

Query: 222 QPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P+ V GL SG+T   IAAG +H+ ALT  G V+ WG    G+L  GD   +++  P  V
Sbjct: 612 TPVAVSGLPSGVTA--IAAGNYHTCALTSSGGVWCWGYNLSGQL--GDGTTTNRSTPGAV 667

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + L    +  ++ G  H+ ALT  G ++ +G   +G+LG G       P  V
Sbjct: 668 SGLP-SGVTAIAAGDEHTCALTGSGGVWCWGDNYYGQLGDGTTTNRSTPGAV 718



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 163/389 (41%), Gaps = 51/389 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WG  + GQLG G+   R     V  L P  V ++ AG  ++ A+       
Sbjct: 279 LTSSGGVWCWGRNDSGQLGDGSFTNRSTPGAVGGL-PSGVTAIAAGGAHTCALTSSGGVW 337

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P  V+ L +  +   A GG H  A    G  + WGGN YG
Sbjct: 338 CWGGNDSGQLGDGSYTDRSTPGAVSGLPS-GVTAIAAGGAHTCARTSSGGVWCWGGNFYG 396

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
           Q G+       T   +     +P        V  +AAG  H+  LT    VW WG  +  
Sbjct: 397 QLGDGTTTDRSTPGAVSG---LPSG------VTAIAAGNYHTCALTGSDGVWCWGDNFYG 447

Query: 163 --PPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S P  V GL   V  IA G +H  AL   G +W WG N+ GQLG G T  
Sbjct: 448 QLGDGTTTNRSTPGAVSGLPSGVTAIAAGNYHTCALTSSGGVWCWGRNDSGQLGDGTTTN 507

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
           RS P  V GL SG+T   IAAG +H+ AL   G V+ WG    G+LG G    SS   P 
Sbjct: 508 RSTPGAVGGLPSGVTA--IAAGDYHTCALMSSGGVWCWGLNNRGQLGDGSYTDSST--PV 563

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            V  L    ++ ++ G  H+ ALT    ++ +G    G+LG G       P+ V   +P+
Sbjct: 564 AVGGLP-SGVMAIAAGNYHTCALTGSDGVWCWGTNSDGQLGDGTTTNRSTPVAVS-GLPS 621

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              A            +A G  HT A+  
Sbjct: 622 GVTA------------IAAGNYHTCALTS 638



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 163/398 (40%), Gaps = 75/398 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  ++ WG    GQLG G+  +R     V  L P  V ++ AG  ++ A+       
Sbjct: 126 LTSSGGVMCWGGNYFGQLGDGSYTDRSTPVAVSGL-PSGVTAIAAGGAHTCALMSSGGVW 184

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T     P  V+ L + ++   A G  H  A+   G  + WG N +G
Sbjct: 185 CWGYNLSGQLGDGSTIYHITPVAVSGLPS-EVTAIAAGYAHTCALTGSGGVWCWGDNGFG 243

Query: 105 QCGEEPER--------------------------------------KDDTGRILRRDIVI 126
           Q G+                                          ++D+G++   D   
Sbjct: 244 QLGDGSFTDSSTPAAVGGLPSGVTAIAAGGRYTCALTSSGGVWCWGRNDSGQL--GDGSF 301

Query: 127 PQRCAPKLI------VRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRV 176
             R  P  +      V  +AAGG H+  LT  G VW WG         G     S P  V
Sbjct: 302 TNRSTPGAVGGLPSGVTAIAAGGAHTCALTSSGGVWCWGGNDSGQLGDGSYTDRSTPGAV 361

Query: 177 QGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTL 234
            GL   V  IA G  H  A    G +W WG N YGQLG G T  RS P  V GL SG+T 
Sbjct: 362 SGLPSGVTAIAAGGAHTCARTSSGGVWCWGGNFYGQLGDGTTTDRSTPGAVSGLPSGVTA 421

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             IAAG +H+ ALT    V+ WG   +G+L  GD   +++  P  V+ L    +  ++ G
Sbjct: 422 --IAAGNYHTCALTGSDGVWCWGDNFYGQL--GDGTTTNRSTPGAVSGLP-SGVTAIAAG 476

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H+ ALT  G ++ +GR D G+LG G       P  V
Sbjct: 477 NYHTCALTSSGGVWCWGRNDSGQLGDGTTTNRSTPGAV 514



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 151/348 (43%), Gaps = 38/348 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  WG    GQLG G    R     V  L P  V ++ AG+ ++ A+             
Sbjct: 438 VWCWGDNFYGQLGDGTTTNRSTPGAVSGL-PSGVTAIAAGNYHTCALTSSGGVWCWGRND 496

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T   + P  V  L +  +   A G +H  A+   G  + WG N  GQ G+  
Sbjct: 497 SGQLGDGTTTNRSTPGAVGGLPS-GVTAIAAGDYHTCALMSSGGVWCWGLNNRGQLGDGS 555

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                T   +     +P        V  +AAG  H+  LT    VW WG         G 
Sbjct: 556 YTDSSTPVAVGG---LPSG------VMAIAAGNYHTCALTGSDGVWCWGTNSDGQLGDGT 606

Query: 167 IKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               S PV V GL   V  IA G +H  AL   G +W WG N  GQLG G T  RS P  
Sbjct: 607 TTNRSTPVAVSGLPSGVTAIAAGNYHTCALTSSGGVWCWGYNLSGQLGDGTTTNRSTPGA 666

Query: 226 VQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           V GL SG+T   IAAG  H+ ALT  G V+ WG   +G+LG  D   +++  P  V+ L 
Sbjct: 667 VSGLPSGVTA--IAAGDEHTCALTGSGGVWCWGDNYYGQLG--DGTTTNRSTPGAVSGLP 722

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              +  ++ G  H+ ALT  G +  +G    G+LG GR +    P++V
Sbjct: 723 -SGVTAIAAGVYHTCALTGSGGVMCWGNNGDGQLGDGRPLYRTTPVDV 769



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 127/297 (42%), Gaps = 31/297 (10%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +   A G WH  A+   G  + WG N  GQ G+        G    R   +     P   
Sbjct: 62  VTAIAAGSWHTCALTGSGEVWCWGYNWSGQLGD--------GSYTDRSTPVAVSGLPSG- 112

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPW----PPGDIKQISVPVRVQGLEQ-VKLIAVGAF 190
           V  +AAGG H+  LT  G V  WG  +      G     S PV V GL   V  IA G  
Sbjct: 113 VTAIAAGGAHTCALTSSGGVMCWGGNYFGQLGDGSYTDRSTPVAVSGLPSGVTAIAAGGA 172

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H  AL   G +W WG N  GQLG G T     P+ V GL    +  IAAG  H+ ALT  
Sbjct: 173 HTCALMSSGGVWCWGYNLSGQLGDGSTIYHITPVAVSGLP-SEVTAIAAGYAHTCALTGS 231

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G V+ WG    G+LG G    SS   P  V  L    +  ++ GG ++ ALT  G ++ +
Sbjct: 232 GGVWCWGDNGFGQLGDGSFTDSST--PAAVGGLP-SGVTAIAAGGRYTCALTSSGGVWCW 288

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           GR D G+LG G       P  V   +P+   A            +A GG HT A+  
Sbjct: 289 GRNDSGQLGDGSFTNRSTPGAVG-GLPSGVTA------------IAAGGAHTCALTS 332



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 113/243 (46%), Gaps = 24/243 (9%)

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQ-VKLI 185
           +P   V  +AAG  H+  LT  G VW WG  W      G     S PV V GL   V  I
Sbjct: 57  SPLQGVTAIAAGSWHTCALTGSGEVWCWGYNWSGQLGDGSYTDRSTPVAVSGLPSGVTAI 116

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHS 244
           A G  H  AL   G +  WG N +GQLG G    RS P+ V GL SG+T   IAAGG H+
Sbjct: 117 AAGGAHTCALTSSGGVMCWGGNYFGQLGDGSYTDRSTPVAVSGLPSGVTA--IAAGGAHT 174

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL   G V+ WG    G+L  GD      + P  V+ L  E +  ++ G  H+ ALT  
Sbjct: 175 CALMSSGGVWCWGYNLSGQL--GDGSTIYHITPVAVSGLPSE-VTAIAAGYAHTCALTGS 231

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++ +G    G+LG G    +  P  V   +P+   A            +A GGR+T A
Sbjct: 232 GGVWCWGDNGFGQLGDGSFTDSSTPAAVG-GLPSGVTA------------IAAGGRYTCA 278

Query: 365 IVE 367
           +  
Sbjct: 279 LTS 281



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 122/289 (42%), Gaps = 35/289 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WG  + GQLG G    R     V  L P  V ++ AG  ++ A+       
Sbjct: 483 LTSSGGVWCWGRNDSGQLGDGTTTNRSTPGAVGGL-PSGVTAIAAGDYHTCALMSSGGVW 541

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P  V  L +  ++  A G +H  A+      + WG N  G
Sbjct: 542 CWGLNNRGQLGDGSYTDSSTPVAVGGLPS-GVMAIAAGNYHTCALTGSDGVWCWGTNSDG 600

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G    R   +     P   V  +AAG  H+  LT  G VW WG     
Sbjct: 601 QLGD--------GTTTNRSTPVAVSGLPSG-VTAIAAGNYHTCALTSSGGVWCWGYNLSG 651

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S P  V GL   V  IA G  H  AL   G +W WG+N YGQLG G T  
Sbjct: 652 QLGDGTTTNRSTPGAVSGLPSGVTAIAAGDEHTCALTGSGGVWCWGDNYYGQLGDGTTTN 711

Query: 220 RSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           RS P  V GL SG+T   IAAG +H+ ALT  G V  WG    G+LG G
Sbjct: 712 RSTPGAVSGLPSGVTA--IAAGVYHTCALTGSGGVMCWGNNGDGQLGDG 758



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 100/247 (40%), Gaps = 32/247 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S+  +  WG    GQLG G+  +      V  L P  V ++ AG+ ++ A+       
Sbjct: 534 LMSSGGVWCWGLNNRGQLGDGSYTDSSTPVAVGGL-PSGVMAIAAGNYHTCALTGSDGVW 592

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   + P  V+ L +  +   A G +H  A+   G  + WG N  G
Sbjct: 593 CWGTNSDGQLGDGTTTNRSTPVAVSGLPS-GVTAIAAGNYHTCALTSSGGVWCWGYNLSG 651

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
           Q G+       T   +     +P        V  +AAG  H+  LT  G VW WG  +  
Sbjct: 652 QLGDGTTTNRSTPGAVSG---LPSG------VTAIAAGDEHTCALTGSGGVWCWGDNYYG 702

Query: 163 --PPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     S P  V GL   V  IA G +H  AL   G +  WGNN  GQLG G    
Sbjct: 703 QLGDGTTTNRSTPGAVSGLPSGVTAIAAGVYHTCALTGSGGVMCWGNNGDGQLGDGRPLY 762

Query: 220 RSQPIPV 226
           R+ P+ V
Sbjct: 763 RTTPVDV 769


>gi|337746644|ref|YP_004640806.1| BNR repeat-containing protein [Paenibacillus mucilaginosus KNP414]
 gi|336297833|gb|AEI40936.1| BNR repeat domain protein [Paenibacillus mucilaginosus KNP414]
          Length = 691

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 158/351 (45%), Gaps = 38/351 (10%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           W  G+D  LG G          VK LE  +V +V AG  +SLA+  DG            
Sbjct: 61  WAWGKD-SLGNGTPYSSATPVQVKDLE--EVVTVAAGGNHSLALKSDGTVWAWGQNEYGV 117

Query: 58  ------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 KT     P QV  LS+   + A     H LA+   G  +AWG N  GQ G    
Sbjct: 118 LGEDPYKTSWRLTPVQVQGLSSVVAISANFS--HNLALKSDGTVWAWGMNNAGQLG---- 171

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
             + T   +      P +      V  VAAG   S+ L  +G +W WG     G  +  S
Sbjct: 172 --NGTTSDMYTSFYTPSQVQGLDSVIAVAAGPGTSLALKSDGTLWAWGGLVGDGTTESRS 229

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+ QGL  V     G      ++ DG +WAWG N YGQLG G T  R  P+P+Q LS 
Sbjct: 230 TPVQAQGLSSVVSFDAGD-SRFVVKSDGTVWAWGWNGYGQLGDGTTTTRYTPVPLQELS- 287

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
            ++   AA  WHS AL  DG V+ WG    G + +  + +++ +  Q ++       V +
Sbjct: 288 -SVAAFAADEWHSLALKSDGTVWEWGCNSKGEMCYESDIRTTPVQVQDLS-----SAVDI 341

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRN 341
           + G  HS+A+  DG ++++G   +G++G   +     P++V  +  P+P  
Sbjct: 342 AAGFEHSLAVKSDGTVWAWGNNGYGQMGDAARTYHSTPIQVLGLGEPSPNT 392



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 17/224 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ-PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           V  VAAG  HS+ L  +G VW WG+     G     + PV+V+ LE+V  +A G  H+LA
Sbjct: 41  VTMVAAGRFHSLALKEDGTVWAWGKDSLGNGTPYSSATPVQVKDLEEVVTVAAGGNHSLA 100

Query: 195 LQEDGALWAWGNNEYGQLGTG--DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           L+ DG +WAWG NEYG LG     T  R  P+ VQGLS  ++V I+A   H+ AL  DG 
Sbjct: 101 LKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLS--SVVAISANFSHNLALKSDGT 158

Query: 253 VYGWGRGEHGRLGFGDNDK--SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           V+ WG    G+LG G      +S   P +V  L  + ++ V+ G   S+AL  DG ++++
Sbjct: 159 VWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGL--DSVIAVAAGPGTSLALKSDGTLWAW 216

Query: 311 GRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVDRRWIAK 353
           G    G +G G   +   P++   ++     +AG   D R++ K
Sbjct: 217 G----GLVGDGTTESRSTPVQAQGLSSVVSFDAG---DSRFVVK 253



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 124/273 (45%), Gaps = 36/273 (13%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S + +   A G +H LA+ + G  +AWG             KD  G         P +  
Sbjct: 37  SKSGVTMVAAGRFHSLALKEDGTVWAWG-------------KDSLGNGTPYSSATPVQVK 83

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLI 185
               V  VAAGG HS+ L  +G VW WGQ         P        PV+VQGL  V  I
Sbjct: 84  DLEEVVTVAAGGNHSLALKSDGTVWAWGQNEYGVLGEDPYKTSWRLTPVQVQGLSSVVAI 143

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ----PRSQPIPVQGLSGLTLVDIAAGG 241
           +    HNLAL+ DG +WAWG N  GQLG G T         P  VQGL   +++ +AAG 
Sbjct: 144 SANFSHNLALKSDGTVWAWGMNNAGQLGNGTTSDMYTSFYTPSQVQGLD--SVIAVAAGP 201

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             S AL  DG ++ WG    G +  GD    S+  P +   L+   +V    G +  V +
Sbjct: 202 GTSLALKSDGTLWAWG----GLV--GDGTTESRSTPVQAQGLS--SVVSFDAGDSRFV-V 252

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             DG ++++G   +G+LG G   T   P  VP+
Sbjct: 253 KSDGTVWAWGWNGYGQLGDGTTTTRYTP--VPL 283



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 108/252 (42%), Gaps = 42/252 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAI- 53
           + S  ++ AWG    GQLG G   +           P +V+      +V AG   SLA+ 
Sbjct: 153 LKSDGTVWAWGMNNAGQLGNGTTSD----MYTSFYTPSQVQGLDSVIAVAAGPGTSLALK 208

Query: 54  -----------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                        DG T++ + P Q   LS+     A   G     V   G  +AWG N 
Sbjct: 209 SDGTLWAWGGLVGDGTTESRSTPVQAQGLSSVVSFDA---GDSRFVVKSDGTVWAWGWNG 265

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--- 159
           YGQ G+        G    R   +P +      V   AA   HS+ L  +G VW WG   
Sbjct: 266 YGQLGD--------GTTTTRYTPVPLQELSS--VAAFAADEWHSLALKSDGTVWEWGCNS 315

Query: 160 --QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
             +     DI+  + PV+VQ L     IA G  H+LA++ DG +WAWGNN YGQ+G    
Sbjct: 316 KGEMCYESDIR--TTPVQVQDLSSAVDIAAGFEHSLAVKSDGTVWAWGNNGYGQMGDAAR 373

Query: 218 QPRSQPIPVQGL 229
              S PI V GL
Sbjct: 374 TYHSTPIQVLGL 385


>gi|334346980|ref|XP_001366466.2| PREDICTED: e3 ubiquitin-protein ligase HERC2 [Monodelphis domestica]
          Length = 4706

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 2982 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 3032

Query: 123  DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
             + IP++       +V++VA  +GG H++ LT +G V++WG+      G   +++   P 
Sbjct: 3033 TVPIPRQITALSNYVVKKVAVHSGGRHAMALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 3092

Query: 175  RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
             ++ L+  +++ IA G+ H+ A+   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 3093 LIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 3152

Query: 233  TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 3153 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 3210

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            + CG   S+ALT+ G ++++G+GD+ RLG+G  V   +P  V           +G+  + 
Sbjct: 3211 IECGAQFSLALTKSGVVWTWGKGDYFRLGHGTDVHVRKPQVV-----------EGLRGKK 3259

Query: 351  IAKLVACGGRHTLAIVE 367
            I   VA G  H LA+ +
Sbjct: 3260 IVH-VAVGALHCLAVTD 3275



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 156/321 (48%), Gaps = 50/321 (15%)

Query: 65  PSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           P  V  L++  IV+ A    G H LA+   G  ++WG      CG       D GR+   
Sbjct: 485 PQLVQGLASRNIVKIAAHSDGHHYLALAATGEVFSWG------CG-------DGGRLGHG 531

Query: 123 DIVIPQRCAPKLI-----------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
           D V  +   PK+I           V  +A G T+S  +T EG ++TWG+        G  
Sbjct: 532 DTVPLEE--PKMISALSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSS 589

Query: 168 KQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           +  ++P+ V GL+ +K+I V    G    LA+ E+G +W+WG+ +YG+LG G +     P
Sbjct: 590 EDQTIPMLVTGLKGLKVIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTP 649

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             ++ L  L +V +  G   S ALT DG+VY WG+G++ RLG G  +      P+ +  L
Sbjct: 650 KLIEKLQDLDVVKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVR--YPKLLEGL 707

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            G+ +V V+ G TH +ALT D  + S+G  D  +     ++T  +P  +P          
Sbjct: 708 QGKKVVDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRITKPEPTALP---------- 757

Query: 344 DGVDRRWIAKLVACGGRHTLA 364
            G+D + I   +ACG   + A
Sbjct: 758 -GLDTKHIVG-IACGPAQSFA 776



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 151/316 (47%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  I Q A      L +   GR Y    N            D  G  L    
Sbjct: 443 PIQCEGLANLGITQIACAEKRFLILSRNGRVYMQAYN-----------SDTLGPQLV--- 488

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
              Q  A + IV+  A + G H + L   G V++WG             P  + K IS  
Sbjct: 489 ---QGLASRNIVKIAAHSDGHHYLALAATGEVFSWGCGDGGRLGHGDTVPLEEPKMISAL 545

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++ ++ P+ V GL GL 
Sbjct: 546 SGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDQTIPMLVTGLKGLK 605

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D++ G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+V+V
Sbjct: 606 VIDVSCGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDVVKV 663

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   SVALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 664 RCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQGKKV 712

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 713 VD-VAAGSTHCLALTE 727



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 157/338 (46%), Gaps = 67/338 (19%)

Query: 7    IIAWGSGEDGQLGIGNNE-----EREWVCVVKALEPYKVRSVV--AGSRNSLAICDDGKT 59
            + A G   +G+LG+G +       R+    + AL  Y V+ V   +G R+++A+  DGK 
Sbjct: 3014 VYACGEATNGRLGLGISSGTVPIPRQ----ITALSNYVVKKVAVHSGGRHAMALTVDGKV 3069

Query: 60   KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
             +                 + P  + AL   +I   A G  H  A+   G  Y WG  EY
Sbjct: 3070 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAAITSSGELYTWGLGEY 3129

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGG--THSVVLTREGH 154
            G+ G      D+T ++            PK++       V QVA G     ++ LT EG 
Sbjct: 3130 GRLGH----GDNTTQL-----------KPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 155  VWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
            V++WG     GD  ++        ++P  ++ L  + V  I  GA  +LAL + G +W W
Sbjct: 3175 VFSWGD----GDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTW 3230

Query: 205  GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            G  +Y +LG G      +P  V+GL G  +V +A G  H  A+TD G+VY WG  +HG+ 
Sbjct: 3231 GKGDYFRLGHGTDVHVRKPQVVEGLRGKKIVHVAVGALHCLAVTDTGQVYAWGDNDHGQQ 3290

Query: 265  GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            G G    + K  P  V  L G+ I +V+CG +HSVA T
Sbjct: 3291 GNGTTTVNRK--PTLVQGLEGQKITRVACGSSHSVAWT 3326



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 109/202 (53%), Gaps = 21/202 (10%)

Query: 175  RVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            +V+ L+  ++I +    G    L L +D  +W+WG+ +YG+LG G +     P+ +  L+
Sbjct: 4008 KVEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 4067

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            GL +V +  G   S ALT  G VY WG+G++ RLG G +D   +  P++V  L G+ ++ 
Sbjct: 4068 GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQVQGLQGKKVIA 4125

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            ++ G  H V  T DG ++++G  D G+LG G    T   ++ P  + A +  G  ++R  
Sbjct: 4126 IATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAALQ--GKKINR-- 4177

Query: 351  IAKLVACGGRHTLAIVEWQTEE 372
                VACG  HTLA   W T +
Sbjct: 4178 ----VACGSAHTLA---WSTSK 4192



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 54/310 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A+T  + +WG G+ G+LG G+            LE  K+ S ++G +            
Sbjct: 511 LAATGEVFSWGCGDGGRLGHGDT---------VPLEEPKMISALSGKQ------------ 549

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                      +   +V  A G  +  A+  +G  Y WG   YG+ G     +D T  +L
Sbjct: 550 -----------AGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHG-SSEDQTIPML 597

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
              +        K+I     +G   ++ +T  G VW+WG     GD  ++          
Sbjct: 598 VTGLK-----GLKVIDVSCGSGDAQTLAVTENGQVWSWGD----GDYGKLGRGGSDGCKT 648

Query: 173 PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P  ++ L+ + ++ V  G+  ++AL +DG +++WG  +  +LG G  +    P  ++GL 
Sbjct: 649 PKLIEKLQDLDVVKVRCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQ 708

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  +VD+AAG  H  ALT+D EV+ WG  +  +    D  + +K  P  +  L  + IV 
Sbjct: 709 GKKVVDVAAGSTHCLALTEDSEVHSWGSNDQCQ--HFDTLRITKPEPTALPGLDTKHIVG 766

Query: 291 VSCGGTHSVA 300
           ++CG   S A
Sbjct: 767 IACGPAQSFA 776



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 41/257 (15%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +I  WG    GQLG     + +     +AL   +   ++ G +   A+  DGK       
Sbjct: 3956 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALAALRPIQLIGGEQTLFAVTADGK------- 4008

Query: 66   SQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCG-------EEPERKDD- 115
              V AL   +++  A G      L + D    ++WG  +YG+ G       + P + D  
Sbjct: 4009 --VEALQGYRVIDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 4066

Query: 116  TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
            TG                L V +V  G   SV LT+ G V+TWG+        G    + 
Sbjct: 4067 TG----------------LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 4110

Query: 172  VPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             P +VQGL+  K+IA+  G+ H +   EDG ++ WG+N+ GQLG G T    +P  V  L
Sbjct: 4111 RPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL 4170

Query: 230  SGLTLVDIAAGGWHSTA 246
             G  +  +A G  H+ A
Sbjct: 4171 QGKKINRVACGSAHTLA 4187



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN--SLAICDDGK 58
            + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR+  +LA+ D+G 
Sbjct: 3115 ITSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGL 3174

Query: 59   TKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
              +                 NIP  +  L+   + Q   G    LA+   G  + WG  +
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
            Y + G        T   +R+  V+      K++   VA G  H + +T  G V+ WG   
Sbjct: 3235 YFRLGH------GTDVHVRKPQVVEGLRGKKIV--HVAVGALHCLAVTDTGQVYAWGDND 3286

Query: 161  --PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
                  G       P  VQGLE  ++  +A G+ H++A
Sbjct: 3287 HGQQGNGTTTVNRKPTLVQGLEGQKITRVACGSSHSVA 3324



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 32/194 (16%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
            +WG G+ G+LG G ++  +    + +L    V  V  GS+ S+A+   G   T       
Sbjct: 4040 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYH 4099

Query: 62   -------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                   +++  P QV  L   K++  A G  HC+   + G  Y WG N+ GQ G     
Sbjct: 4100 RLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG----- 4154

Query: 113  KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
             D T   ++R  ++      K  + +VA G  H++        W+  +P   G +    V
Sbjct: 4155 -DGTTNAIQRPRLVAALQGKK--INRVACGSAHTL-------AWSTSKPANAGKLP-TQV 4203

Query: 173  PVRVQGLEQVKLIA 186
            P+    L+++ +I+
Sbjct: 4204 PMEYNHLQEIPIIS 4217


>gi|313221348|emb|CBY32102.1| unnamed protein product [Oikopleura dioica]
          Length = 1199

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 169/373 (45%), Gaps = 82/373 (21%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
            WG  + GQLG+G                         S N L  C          PS +
Sbjct: 3   GWGKNDYGQLGLG-------------------------SENMLISC----------PSPI 27

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
           +A  N  ++  A G  H + +    + Y+ G NE+GQ G++                   
Sbjct: 28  DA--NQSVISIASGLRHTVYLTSTRKVYSCGSNEFGQLGQQK-----------------S 68

Query: 129 RCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI--KQISV--PVRVQ 177
           +C P L+       +  VAAG   S+ +   G ++ WG+    G++  KQ S+  P  + 
Sbjct: 69  QCRPSLVTGFGAEEIFHVAAGDFFSIAIAESGLLFGWGRSLN-GELMCKQDSLHEPKLLD 127

Query: 178 GLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTL 234
            +    V  +A GA H +AL E+G + +WG+N  GQLG G ++    +P  +  L+   +
Sbjct: 128 KIMHWSVVQVACGAQHCIALTEEGTILSWGSNTQGQLGLGSSEIEFLEPTIIASLNAFPI 187

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
             I AG +HS  L+  G ++ WG+   G+LG G++D S +  P+ V  L  +++V V+ G
Sbjct: 188 SQICAGAYHSGVLSPSGTLFTWGKNNWGQLGHGNSD-SFQSSPRLVKTLRHQEVVFVAMG 246

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
             HSV  TR+G +FS+G G +G+LG+       QP ++          G  V +      
Sbjct: 247 EEHSVCRTRNGGVFSWGHGGNGQLGHNSMANVTQPKKI------MELMGTTVCQ------ 294

Query: 355 VACGGRHTLAIVE 367
           + CG RHT+++ +
Sbjct: 295 ICCGRRHTISLTD 307



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 35/324 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + ST  + + GS E GQLG   ++ R    +V      ++  V AG   S+AI + G   
Sbjct: 46  LTSTRKVYSCGSNEFGQLGQQKSQCRP--SLVTGFGAEEIFHVAAGDFFSIAIAESGLLF 103

Query: 58  ------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                       K  + + P  ++ + +  +VQ A G  HC+A+ ++G   +WG N  GQ
Sbjct: 104 GWGRSLNGELMCKQDSLHEPKLLDKIMHWSVVQVACGAQHCIALTEEGTILSWGSNTQGQ 163

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-WPP 164
            G      +     L   I+      P   + Q+ AG  HS VL+  G ++TWG+  W  
Sbjct: 164 LGLGSSEIE----FLEPTIIASLNAFP---ISQICAGAYHSGVLSPSGTLFTWGKNNWGQ 216

Query: 165 -----GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D  Q S P  V+ L  ++V  +A+G  H++    +G +++WG+   GQLG    
Sbjct: 217 LGHGNSDSFQ-SSPRLVKTLRHQEVVFVAMGEEHSVCRTRNGGVFSWGHGGNGQLGHNSM 275

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM-V 276
              +QP  +  L G T+  I  G  H+ +LTD  ++ G+G   + +LG   ND S+++ +
Sbjct: 276 ANVTQPKKIMELMGTTVCQICCGRRHTISLTDKRKLLGFGLNSNNQLG-THNDTSARLPI 334

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVA 300
              ++L     +  ++ GG  S +
Sbjct: 335 TIPISLTDDRQLSCIAAGGDQSFS 358



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 201 LWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           ++ WG N+YGQLG G +    S P P+   +  +++ IA+G  H+  LT   +VY  G  
Sbjct: 1   MYGWGKNDYGQLGLGSENMLISCPSPID--ANQSVISIASGLRHTVYLTSTRKVYSCGSN 58

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           E G+LG     + S+  P  V     E+I  V+ G   S+A+   G +F +GR  +G L 
Sbjct: 59  EFGQLG----QQKSQCRPSLVTGFGAEEIFHVAAGDFFSIAIAESGLLFGWGRSLNGEL- 113

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             ++ +  +P  +           D +   W    VACG +H +A+ E
Sbjct: 114 MCKQDSLHEPKLL-----------DKI-MHWSVVQVACGAQHCIALTE 149


>gi|422295033|gb|EKU22332.1| phosphatidylinositide phosphatase sac1 [Nannochloropsis gaditana
            CCMP526]
          Length = 1021

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 177/419 (42%), Gaps = 80/419 (19%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------------------- 41
            +  +T + AWG G +GQLG    ++         L P ++R                   
Sbjct: 631  IVPSTRVFAWGQGTEGQLGHSPIQKSALTGAYVELSPRELRLDTEQDQQKIEKHNPWGFV 690

Query: 42   SVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTKIVQAAIGGWH 85
             + AG   S  + +DGK                +K    P QV AL + KIV+ A G +H
Sbjct: 691  DLAAGLNYSAGVTEDGKLYTWGDGSNHKLGHGDSKPVYRPRQVEALQDVKIVKVACGDFH 750

Query: 86   CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV---IPQRCAPKLIVRQVAAG 142
              A+D+ GR + WG       G       D     R  +V   +   C     V  VA G
Sbjct: 751  TAAIDEDGRLWTWGWGGSLFGGIGGLGHGDEAEQPRPKVVRSLVDYGCR----VGSVACG 806

Query: 143  GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL-EQVKLIAVGAFH--NLAL 195
              H+++LT +G V T G         G      VP  V+   E+  ++ V A H  NL L
Sbjct: 807  EKHTLILTDDGEVLTAGNGEYGRLGNGGSSDHGVPEPVELFDEKTNIVEVAAGHAFNLVL 866

Query: 196  QEDGALWAWGNNE------YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
             +DG ++ WG NE       G +        + P+ V+ L    +V +AAG  HS A+T+
Sbjct: 867  TQDGKIFTWGRNEQGQLGLGGGISMDVYSMEAVPLLVEALESKKVVHVAAGHSHSAAVTE 926

Query: 250  DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IF 308
            +GE+Y WG   H             + PQ   +  G+ + QV CGG+H+  +T D H +F
Sbjct: 927  EGELYMWGMKIH-------------LEPQVFRVGEGDKVWQVGCGGSHTAVVTEDAHQLF 973

Query: 309  SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +FG+G    LG+G +  T          P P+   DG+  R + K VACG RH   I +
Sbjct: 974  TFGKGSSLCLGHGTRSYT----------PHPKLVADGLAGRGVVK-VACGHRHMAVITD 1021



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 31/185 (16%)

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           A+ A       +L     + R  P   +     T   ++A   H+  +     V+ WG+G
Sbjct: 586 AMRALLQQRCRRLAVAQAKLRGVPAVARVRQSTTFSTLSATSSHT--IVPSTRVFAWGQG 643

Query: 260 EHGRLGFGDNDKSS------KMVPQKVNLLAGED-----------IVQVSCGGTHSVALT 302
             G+LG     KS+      ++ P+++ L   +D            V ++ G  +S  +T
Sbjct: 644 TEGQLGHSPIQKSALTGAYVELSPRELRLDTEQDQQKIEKHNPWGFVDLAAGLNYSAGVT 703

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            DG ++++G G + +LG+G      +P+  P  + A ++         I K VACG  HT
Sbjct: 704 EDGKLYTWGDGSNHKLGHG----DSKPVYRPRQVEALQDVK-------IVK-VACGDFHT 751

Query: 363 LAIVE 367
            AI E
Sbjct: 752 AAIDE 756


>gi|268569112|ref|XP_002640436.1| Hypothetical protein CBG08488 [Caenorhabditis briggsae]
          Length = 985

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 135/264 (51%), Gaps = 16/264 (6%)

Query: 68  VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP 127
           V+  S   IVQ A G  H LAV D GR +AWG NE+GQ G E         I  +++  P
Sbjct: 57  VSLTSGVGIVQIAAGRAHSLAVADDGRVFAWGSNEHGQLGME-------NTITWQEM--P 107

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV 187
           +R      V QVA+G  H + LT +G V+ WG+     D + I  P  V+ L  + ++ V
Sbjct: 108 KRINQLNEVVQVASGSDHCIALTEDGRVYVWGEQ---ADGRCIHHPELVEHLNAIPIVRV 164

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             GA H +A+   GA++ WG N  G+LG  D +P++    V  + GL +V+ A G  H+ 
Sbjct: 165 EAGARHCVAISASGAVFTWGQNNSGELGMDDFRPQTSVHHVTQMDGLGVVEAACGDNHTI 224

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            LT  G  + +G    G+ GFG      +  P  V+ L G  + +++ G  H++A+ R G
Sbjct: 225 LLTHCGRTFSFGSDALGQCGFG-KKLEKRPNPTAVSDLIGSHVTRIAAGACHTIAIIR-G 282

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQP 329
             + FG    G+LG G+ +T   P
Sbjct: 283 SPYPFGLNSSGQLGNGKIMTQSTP 306



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI-PVQGLSGLTLVDIAAG 240
           VK +A G  H + L +D  +W+ G+N  GQLG G     S  I PV   SG+ +V IAAG
Sbjct: 12  VKAVACGEQHTIFLTKDRKMWSVGSNVDGQLGRGKRSEGSFSIYPVSLTSGVGIVQIAAG 71

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             HS A+ DDG V+ WG  EHG+LG  +N  + + +P+++N L   ++VQV+ G  H +A
Sbjct: 72  RAHSLAVADDGRVFAWGSNEHGQLGM-ENTITWQEMPKRINQL--NEVVQVASGSDHCIA 128

Query: 301 LTRDGHIFSFGRGDHGR 317
           LT DG ++ +G    GR
Sbjct: 129 LTEDGRVYVWGEQADGR 145



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 120/283 (42%), Gaps = 66/283 (23%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-------ISV-PVRVQGLEQVKLIAV 187
           V+ VA G  H++ LT++  +W+ G     G + +        S+ PV +     +  IA 
Sbjct: 12  VKAVACGEQHTIFLTKDRKMWSVGSNVD-GQLGRGKRSEGSFSIYPVSLTSGVGIVQIAA 70

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDT-----QPR---------------------- 220
           G  H+LA+ +DG ++AWG+NE+GQLG  +T      P+                      
Sbjct: 71  GRAHSLAVADDGRVFAWGSNEHGQLGMENTITWQEMPKRINQLNEVVQVASGSDHCIALT 130

Query: 221 -----------------SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
                              P  V+ L+ + +V + AG  H  A++  G V+ WG+   G 
Sbjct: 131 EDGRVYVWGEQADGRCIHHPELVEHLNAIPIVRVEAGARHCVAISASGAVFTWGQNNSGE 190

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           LG  D    + +    V  + G  +V+ +CG  H++ LT  G  FSFG    G+ G+G+K
Sbjct: 191 LGMDDFRPQTSV--HHVTQMDGLGVVEAACGDNHTILLTHCGRTFSFGSDALGQCGFGKK 248

Query: 324 VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +            P P    D +        +A G  HT+AI+
Sbjct: 249 LEKR---------PNPTAVSDLIGSH--VTRIAAGACHTIAII 280



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 33/259 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDGKT------ 59
           + AWGS E GQLG+ N     W  + K +    +V  V +GS + +A+ +DG+       
Sbjct: 84  VFAWGSNEHGQLGMENT--ITWQEMPKRINQLNEVVQVASGSDHCIALTEDGRVYVWGEQ 141

Query: 60  ---KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER-KDD 115
              +  + P  V  L+   IV+   G  HC+A+   G  + WG N  G+ G +  R +  
Sbjct: 142 ADGRCIHHPELVEHLNAIPIVRVEAGARHCVAISASGAVFTWGQNNSGELGMDDFRPQTS 201

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQI 170
              + + D          L V + A G  H+++LT  G  +++     GQ      +++ 
Sbjct: 202 VHHVTQMD---------GLGVVEAACGDNHTILLTHCGRTFSFGSDALGQCGFGKKLEKR 252

Query: 171 SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             P  V  L    V  IA GA H +A+   G+ + +G N  GQLG G    +S P     
Sbjct: 253 PNPTAVSDLIGSHVTRIAAGACHTIAIIR-GSPYPFGLNSSGQLGNGKIMTQSTPRKTDD 311

Query: 229 LSGLTLVDIAAGGWHSTAL 247
           L  +T V     G+H T  
Sbjct: 312 LDHVTAV---FAGYHQTFF 327


>gi|308812700|ref|XP_003083657.1| OJ1124_B05.9 gene product (ISS) [Ostreococcus tauri]
 gi|116055538|emb|CAL58206.1| OJ1124_B05.9 gene product (ISS), partial [Ostreococcus tauri]
          Length = 197

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 4/194 (2%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           + V  IA G+FH L    +G + ++GN  YGQLG G T        ++    L +V IAA
Sbjct: 3   KHVVEIAAGSFHLLMRTRNGEVMSYGNGSYGQLGLGATGAADVCRVIETFGRLGVVKIAA 62

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           GGWHS A+T  G +Y WGRGE+GRLG GD D   K+VP+ V L     I  ++ GG+HS 
Sbjct: 63  GGWHSAAVTAGGVLYTWGRGEYGRLGHGD-DVKDKVVPKLVELDESVFIADIALGGSHSC 121

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T +G++ S+GR   GRLG   +  +     VP  +  P        +RW A  ++CGG
Sbjct: 122 AITAEGNVLSWGRTTLGRLGRVIRDPSSSTCGVPSRVAFPPLPN---GKRWKALKISCGG 178

Query: 360 RHTLAIVEWQTEES 373
           RHTLA+    T+++
Sbjct: 179 RHTLAVCTVSTDDA 192



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 28/201 (13%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP 132
           +  +V+ A G +H L     G   ++G   YGQ G       D  R++            
Sbjct: 2   DKHVVEIAAGSFHLLMRTRNGEVMSYGNGSYGQLGLGATGAADVCRVIET--------FG 53

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVKL--I 185
           +L V ++AAGG HS  +T  G ++TW     G+     D+K   VP  V+  E V +  I
Sbjct: 54  RLGVVKIAAGGWHSAAVTAGGVLYTWGRGEYGRLGHGDDVKDKVVPKLVELDESVFIADI 113

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---------TLVD 236
           A+G  H+ A+  +G + +WG    G+LG     P S    V                 + 
Sbjct: 114 ALGGSHSCAITAEGNVLSWGRTTLGRLGRVIRDPSSSTCGVPSRVAFPPLPNGKRWKALK 173

Query: 237 IAAGGWHSTAL----TDDGEV 253
           I+ GG H+ A+    TDD +V
Sbjct: 174 ISCGGRHTLAVCTVSTDDADV 194



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T   ++   +       +V+ A GGWH  AV   G  Y WG  EYG+ G   + KD  
Sbjct: 38  GATGAADVCRVIETFGRLGVVKIAAGGWHSAAVTAGGVLYTWGRGEYGRLGHGDDVKDK- 96

Query: 117 GRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
                   V+P+       + +  +A GG+HS  +T EG+V +WG+
Sbjct: 97  --------VVPKLVELDESVFIADIALGGSHSCAITAEGNVLSWGR 134



 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 17/119 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           ++++G+G  GQLG+G     +   V++      V  + AG  +S A+   G         
Sbjct: 24  VMSYGNGSYGQLGLGATGAADVCRVIETFGRLGVVKIAAGGWHSAAVTAGGVLYTWGRGE 83

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     K + +P  V    +  I   A+GG H  A+  +G   +WG    G+ G 
Sbjct: 84  YGRLGHGDDVKDKVVPKLVELDESVFIADIALGGSHSCAITAEGNVLSWGRTTLGRLGR 142


>gi|282163157|ref|YP_003355542.1| hypothetical protein MCP_0487 [Methanocella paludicola SANAE]
 gi|282155471|dbj|BAI60559.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 444

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 161/331 (48%), Gaps = 47/331 (14%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT--------KTENIPSQVNALSNTKIVQAAIGG 83
           V A  P  V S+ A +  S+A+ DDG            E    Q   +S  + + A  G 
Sbjct: 24  VTAWSP-AVVSIAASNSTSVALLDDGTVWQWGYVSDGVEYATPQKVEISVVRKIAAGYG- 81

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
            H LA+   G  +AWG N+YGQ G+     D  G         P + A    V+ +AAG 
Sbjct: 82  -HVLALKGDGTVWAWGSNKYGQLGDG-TYNDSAG---------PVQVAGLTGVKAIAAGK 130

Query: 144 THSVVLTREGHVWTWGQPWPPGDI-------KQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
             S+ L  +G VW WG     G +       K  +VP++V+GL  ++ I+ G  H LA Q
Sbjct: 131 DISLALKGDGTVWAWGSN-SYGQVGEGSLNYKGTAVPIQVKGLNNIQAISAGGSHCLASQ 189

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            DGA+WAWG+N +G LG G  + R  P+  +  +   ++ + AG  H+ A+  DG V+ W
Sbjct: 190 GDGAVWAWGDNRHGVLGDGTNESRFTPVRSKIYN---VMGLDAGDAHALAVMVDGNVWSW 246

Query: 257 GRGEHGRLGFGD---ND--------KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           G   +G+LG G    ND        ++    P  V  L+G  +  V+ G +HSVAL  +G
Sbjct: 247 GYNYNGQLGMGGTSLNDLGRLSFGPEADSFNPDIVRGLSG--VKSVAVGASHSVALADNG 304

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            ++++G    G+LG G+  T G  M VP+ +
Sbjct: 305 TVWTWGSNSDGQLGVGK--TGGSDMTVPVRV 333



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 142/297 (47%), Gaps = 54/297 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWGS + GQLG G   +      V  L    V+++ AG   SLA+  DG        
Sbjct: 91  TVWAWGSNKYGQLGDGTYNDSAGPVQVAGLT--GVKAIAAGKDISLALKGDGTVWAWGSN 148

Query: 60  ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                       K   +P QV  L+N + + A  GG HCLA    G  +AWG N +G  G
Sbjct: 149 SYGQVGEGSLNYKGTAVPIQVKGLNNIQAISA--GGSHCLASQGDGAVWAWGDNRHGVLG 206

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW----- 162
           +       T          P R +    V  + AG  H++ +  +G+VW+WG  +     
Sbjct: 207 DGTNESRFT----------PVR-SKIYNVMGLDAGDAHALAVMVDGNVWSWGYNYNGQLG 255

Query: 163 ----PPGDIKQISV--------PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                  D+ ++S         P  V+GL  VK +AVGA H++AL ++G +W WG+N  G
Sbjct: 256 MGGTSLNDLGRLSFGPEADSFNPDIVRGLSGVKSVAVGASHSVALADNGTVWTWGSNSDG 315

Query: 211 QLGTGDT--QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           QLG G T     + P+ V G++G+T VD  AG +H+ AL DDG V+ WG    G++G
Sbjct: 316 QLGVGKTGGSDMTVPVRVSGINGITAVD--AGLYHTLALKDDGSVWAWGSNAEGQVG 370



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 142/306 (46%), Gaps = 36/306 (11%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG       P QV  L+  K + A  G    LA+   G  +AWG N YGQ GE       
Sbjct: 105 DGTYNDSAGPVQVAGLTGVKAIAA--GKDISLALKGDGTVWAWGSNSYGQVGE------- 155

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQIS 171
            G +  +   +P +      ++ ++AGG+H +    +G VW WG         G  +   
Sbjct: 156 -GSLNYKGTAVPIQVKGLNNIQAISAGGSHCLASQGDGAVWAWGDNRHGVLGDGTNESRF 214

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ----------PRS 221
            PVR + +  V  +  G  H LA+  DG +W+WG N  GQLG G T           P +
Sbjct: 215 TPVRSK-IYNVMGLDAGDAHALAVMVDGNVWSWGYNYNGQLGMGGTSLNDLGRLSFGPEA 273

Query: 222 ---QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
               P  V+GLSG+    +A G  HS AL D+G V+ WG    G+LG G    S   VP 
Sbjct: 274 DSFNPDIVRGLSGVK--SVAVGASHSVALADNGTVWTWGSNSDGQLGVGKTGGSDMTVPV 331

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN--- 335
           +V+ + G  I  V  G  H++AL  DG ++++G    G++G  R  + G P  V +    
Sbjct: 332 RVSGING--ITAVDAGLYHTLALKDDGSVWAWGSNAEGQVG-NRSASAGSPALVLMQTQI 388

Query: 336 IPAPRN 341
           +P+P +
Sbjct: 389 LPSPTS 394



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 8/221 (3%)

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK 183
           +++P   A    V  +AA  + SV L  +G VW WG      D  + + P +V+ +  V+
Sbjct: 19  LIMPCVTAWSPAVVSIAASNSTSVALLDDGTVWQWGYV---SDGVEYATPQKVE-ISVVR 74

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            IA G  H LAL+ DG +WAWG+N+YGQLG G     + P+ V GL+G+    IAAG   
Sbjct: 75  KIAAGYGHVLALKGDGTVWAWGSNKYGQLGDGTYNDSAGPVQVAGLTGVKA--IAAGKDI 132

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S AL  DG V+ WG   +G++G G  +     VP +V  L   +I  +S GG+H +A   
Sbjct: 133 SLALKGDGTVWAWGSNSYGQVGEGSLNYKGTAVPIQVKGL--NNIQAISAGGSHCLASQG 190

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
           DG ++++G   HG LG G   +   P+   I      +AGD
Sbjct: 191 DGAVWAWGDNRHGVLGDGTNESRFTPVRSKIYNVMGLDAGD 231



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 35/159 (22%)

Query: 9   AWGSGEDGQLGIGNNEEREW-------------VCVVKALEPYKVRSVVAGSRNSLAICD 55
           +WG   +GQLG+G     +                +V+ L    V+SV  G+ +S+A+ D
Sbjct: 245 SWGYNYNGQLGMGGTSLNDLGRLSFGPEADSFNPDIVRGLS--GVKSVAVGASHSVALAD 302

Query: 56  DGKTKT------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +G   T                    +P +V+ ++    V A +  +H LA+ D G  +A
Sbjct: 303 NGTVWTWGSNSDGQLGVGKTGGSDMTVPVRVSGINGITAVDAGL--YHTLALKDDGSVWA 360

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           WG N  GQ G           +L +  ++P   +  +IV
Sbjct: 361 WGSNAEGQVGNRSASAGSPALVLMQTQILPSPTSTPIIV 399


>gi|301121999|ref|XP_002908726.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262099488|gb|EEY57540.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 2298

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 170/340 (50%), Gaps = 29/340 (8%)

Query: 41  RSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           R V +  +NS      G T +     ++ AL   +I+Q   G  H + +   G+ +  G 
Sbjct: 373 REVWSCGQNSYGELGHGDTASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGKVFTCGY 432

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA----GGTHSVVLTREGHVW 156
           N+ GQCG+       T R+     +      PK+      A    G  H+++++ +G V 
Sbjct: 433 NDNGQCGQ-----GGTARVSHLSEI------PKMDSGSSQAHAYNGCEHTILVSTDGRVA 481

Query: 157 TWGQPWPP----GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGAL---WAWGNN 207
           T G  +      G+    SVP  ++ LE   V+L++   +H +   EDG L   + +G N
Sbjct: 482 TCGYNYRGQLGHGNTTSESVPKIIRSLENKIVRLVSCSYYHTVLACEDGNLQNLYTFGRN 541

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           +YGQLG  D+  R  P  V+ LS   +V +A G +H+  +T  G+ + +G+ ++G+LG  
Sbjct: 542 DYGQLGHNDSIDRKIPQFVEALSDQQIVSVACGQYHTMVVTVSGKAFAFGKNDYGQLGI- 600

Query: 268 DNDKSSKMVPQKV-NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR-KVT 325
            +   +++ P +V   L  ++ +++ CG  H++AL    H+F+FGR D+G+LG GR   +
Sbjct: 601 -DTMENQLAPVQVRGGLERQECLEIRCGYYHTIALCSGAHLFAFGRNDYGQLGLGRSNAS 659

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +   +++     +     D ++ + I + +ACG  HT+A+
Sbjct: 660 STSNLQLQQQRFSNARLIDELEGKDIVR-IACGCYHTIAV 698



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 107/399 (26%), Positives = 192/399 (48%), Gaps = 67/399 (16%)

Query: 10  WGSGED--GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------ 61
           W  G++  G+LG G+   R+    ++AL+  ++  + AG+ +++ +  DGK  T      
Sbjct: 376 WSCGQNSYGELGHGDTASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGKVFTCGYNDN 435

Query: 62  ----ENIPSQVNALSN-------TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
               +   ++V+ LS        +    A  G  H + V   GR    G N  GQ G   
Sbjct: 436 GQCGQGGTARVSHLSEIPKMDSGSSQAHAYNGCEHTILVSTDGRVATCGYNYRGQLGHGN 495

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV---WTWGQPWPPGDI 167
              +   +I+R             IVR V+    H+V+   +G++   +T+G+     D 
Sbjct: 496 TTSESVPKIIRS--------LENKIVRLVSCSYYHTVLACEDGNLQNLYTFGR----NDY 543

Query: 168 KQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
            Q+         +P  V+ L  +Q+  +A G +H + +   G  +A+G N+YGQLG    
Sbjct: 544 GQLGHNDSIDRKIPQFVEALSDQQIVSVACGQYHTMVVTVSGKAFAFGKNDYGQLGIDTM 603

Query: 218 QPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS--- 273
           + +  P+ V+G L     ++I  G +H+ AL     ++ +GR ++G+LG G ++ SS   
Sbjct: 604 ENQLAPVQVRGGLERQECLEIRCGYYHTIALCSGAHLFAFGRNDYGQLGLGRSNASSTSN 663

Query: 274 -KMVPQK------VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
            ++  Q+      ++ L G+DIV+++CG  H++A++ +G ++ FGR +HG+LG G   TT
Sbjct: 664 LQLQQQRFSNARLIDELEGKDIVRIACGCYHTIAVSDNGVMYVFGRNNHGQLGTGD--TT 721

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +    PI+        D V +R    LVA G  HT+ +
Sbjct: 722 ERVYPFPID--------DFVGKR--IALVAAGFYHTVVL 750



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 52/278 (18%)

Query: 16  GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------------- 61
           GQLG GN        ++++LE   VR V     +++  C+DG  +               
Sbjct: 489 GQLGHGNTTSESVPKIIRSLENKIVRLVSCSYYHTVLACEDGNLQNLYTFGRNDYGQLGH 548

Query: 62  -----ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
                  IP  V ALS+ +IV  A G +H + V   G+A+A+G N+YGQ G +   ++  
Sbjct: 549 NDSIDRKIPQFVEALSDQQIVSVACGQYHTMVVTVSGKAFAFGKNDYGQLGID-TMENQL 607

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
             +  R  +  Q C       ++  G  H++ L    H++ +G+     D  Q+      
Sbjct: 608 APVQVRGGLERQECL------EIRCGYYHTIALCSGAHLFAFGR----NDYGQLGLGRSN 657

Query: 171 -----SVPVRVQGLEQVKL-----------IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                ++ ++ Q     +L           IA G +H +A+ ++G ++ +G N +GQLGT
Sbjct: 658 ASSTSNLQLQQQRFSNARLIDELEGKDIVRIACGCYHTIAVSDNGVMYVFGRNNHGQLGT 717

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           GDT  R  P P+    G  +  +AAG +H+  LT   E
Sbjct: 718 GDTTERVYPFPIDDFVGKRIALVAAGFYHTVVLTGGKE 755



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +W+ G N YG+LG GDT  R     +Q L    ++ I AG  H+  LT DG+V+  G  +
Sbjct: 375 VWSCGQNSYGELGHGDTASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGKVFTCGYND 434

Query: 261 HGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +G+ G G   + S +  +P+   + +G        G  H++ ++ DG + + G    G+L
Sbjct: 435 NGQCGQGGTARVSHLSEIPK---MDSGSSQAHAYNGCEHTILVSTDGRVATCGYNYRGQL 491

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+G   TT +   VP  I +  N         I +LV+C   HT+   E
Sbjct: 492 GHGN--TTSE--SVPKIIRSLENK--------IVRLVSCSYYHTVLACE 528



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 249 DDGE--VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           D+GE  V+  G+  +G LG GD   +S+   +++  L  ++I+Q+  G  H+V LT DG 
Sbjct: 369 DEGEREVWSCGQNSYGELGHGDT--ASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGK 426

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           +F+ G  D+G+ G G         E+P
Sbjct: 427 VFTCGYNDNGQCGQGGTARVSHLSEIP 453


>gi|408500311|ref|YP_006864230.1| putative regulator of chromosome condensation, RCC1 [Bifidobacterium
            asteroides PRL2011]
 gi|408465135|gb|AFU70664.1| putative regulator of chromosome condensation, RCC1 [Bifidobacterium
            asteroides PRL2011]
          Length = 1160

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 165/368 (44%), Gaps = 45/368 (12%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
            AWG    GQLG G   +R    +VK    A   +    V AG   SLA+  DG       
Sbjct: 690  AWGRNNYGQLGDGTLTQRNKPVIVKKPAGASADFTYVQVSAGDEQSLAVGSDGYVYAWGN 749

Query: 62   --------------ENIPSQV----NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                            +P +V    +  S    VQ + G +H LA+D +G  +AWG N++
Sbjct: 750  NESGQLGNGSSGGYSTVPLRVIDPNDPRSGLTAVQVSAGYYHSLALDARGNIWAWGFNQF 809

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
            G+ G      ++    +      P R A  +   QV+ G  H+  +  +G+ W+WG  W 
Sbjct: 810  GELGN----GNNINSAIPTLAQYP-RDAGTVTAIQVSGGFHHTAAIDTKGNTWSWGWNWF 864

Query: 164  ----PGDIKQISVPVRVQ-----GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                 G+    ++PV VQ     G  +   ++ GA H+L +   G  WAWG N+ G+LG 
Sbjct: 865  GQLGNGNNIDSAIPVPVQYPRDAGTVRAIQVSAGADHSLIIDTKGNTWAWGWNQLGELGN 924

Query: 215  GDTQPRSQPIP-----VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
            G +   + P+P      +    +T + ++AGG+HS A+  +G  + WG  + G LG G  
Sbjct: 925  GSSSADANPVPGMVKYPENAGTVTAIQVSAGGYHSLAIDKNGNAWAWGGNDSGELGIGTT 984

Query: 270  DKSSKMVPQKVNLLAGE-DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
             KS      +    AG    VQVS GG HS+ + ++G  +++G    G+LG G    +  
Sbjct: 985  SKSEIPALVQYPKNAGAVTTVQVSAGGYHSLGIDKEGKTWAWGYNQFGQLGNGTISNSSI 1044

Query: 329  PMEVPINI 336
            P  V  N+
Sbjct: 1045 PTPVAFNL 1052



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 149/337 (44%), Gaps = 31/337 (9%)

Query: 48   RNSLAICDDGKTKTENIPSQVN----ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
            RN+     DG     N P  V     A ++   VQ + G    LAV   G  YAWG NE 
Sbjct: 693  RNNYGQLGDGTLTQRNKPVIVKKPAGASADFTYVQVSAGDEQSLAVGSDGYVYAWGNNES 752

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QP 161
            GQ G        T   +   ++ P      L   QV+AG  HS+ L   G++W WG  Q 
Sbjct: 753  GQLGNGSSGGYST---VPLRVIDPNDPRSGLTAVQVSAGYYHSLALDARGNIWAWGFNQF 809

Query: 162  WPPGDIKQI--SVPVRVQ-----GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
               G+   I  ++P   Q     G      ++ G  H  A+   G  W+WG N +GQLG 
Sbjct: 810  GELGNGNNINSAIPTLAQYPRDAGTVTAIQVSGGFHHTAAIDTKGNTWSWGWNWFGQLGN 869

Query: 215  GDTQPRSQPIPVQ---GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            G+    + P+PVQ       +  + ++AG  HS  +   G  + WG  + G LG G +  
Sbjct: 870  GNNIDSAIPVPVQYPRDAGTVRAIQVSAGADHSLIIDTKGNTWAWGWNQLGELGNGSSSA 929

Query: 272  SSKMVPQKVNLLAGEDIV---QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
             +  VP  V        V   QVS GG HS+A+ ++G+ +++G  D G LG G    T  
Sbjct: 930  DANPVPGMVKYPENAGTVTAIQVSAGGYHSLAIDKNGNAWAWGGNDSGELGIG----TTS 985

Query: 329  PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              E+P  +  P+NAG     +     V+ GG H+L I
Sbjct: 986  KSEIPALVQYPKNAGAVTTVQ-----VSAGGYHSLGI 1017



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 143/300 (47%), Gaps = 36/300 (12%)

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LAV   G AYAWG N YGQ G+    + +   I+++    P   +      QV+AG   
Sbjct: 679 TLAVGSDGNAYAWGRNNYGQLGDGTLTQRNKPVIVKK----PAGASADFTYVQVSAGDEQ 734

Query: 146 SVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRV-------QGLEQVKLIAVGA 189
           S+ +  +G+V+ WG      +  Q+         +VP+RV        GL  V+ ++ G 
Sbjct: 735 SLAVGSDGYVYAWGN----NESGQLGNGSSGGYSTVPLRVIDPNDPRSGLTAVQ-VSAGY 789

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ---GLSGLTLVDIAAGGWHSTA 246
           +H+LAL   G +WAWG N++G+LG G+    + P   Q       +T + ++ G  H+ A
Sbjct: 790 YHSLALDARGNIWAWGFNQFGELGNGNNINSAIPTLAQYPRDAGTVTAIQVSGGFHHTAA 849

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE-DIVQVSCGGTHSVALTRDG 305
           +   G  + WG    G+LG G+N  S+  VP +    AG    +QVS G  HS+ +   G
Sbjct: 850 IDTKGNTWSWGWNWFGQLGNGNNIDSAIPVPVQYPRDAGTVRAIQVSAGADHSLIIDTKG 909

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           + +++G    G LG G       P  VP  +  P NAG        A  V+ GG H+LAI
Sbjct: 910 NTWAWGWNQLGELGNGSSSADANP--VPGMVKYPENAG-----TVTAIQVSAGGYHSLAI 962



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 143/324 (44%), Gaps = 63/324 (19%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS------VVAGSRNSLAICDDGKT- 59
            + AWG+ E GQLG G++     V + + ++P   RS      V AG  +SLA+   G   
Sbjct: 744  VYAWGNNESGQLGNGSSGGYSTVPL-RVIDPNDPRSGLTAVQVSAGYYHSLALDARGNIW 802

Query: 60   -----------KTENIPSQVNALS-------NTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                          NI S +  L+           +Q + G  H  A+D +G  ++WG N
Sbjct: 803  AWGFNQFGELGNGNNINSAIPTLAQYPRDAGTVTAIQVSGGFHHTAAIDTKGNTWSWGWN 862

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIP---QRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
             +GQ G         G  +   I +P    R A  +   QV+AG  HS+++  +G+ W W
Sbjct: 863  WFGQLGN--------GNNIDSAIPVPVQYPRDAGTVRAIQVSAGADHSLIIDTKGNTWAW 914

Query: 159  GQPWP-----------------PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
            G  W                  PG +K       V  ++    ++ G +H+LA+ ++G  
Sbjct: 915  G--WNQLGELGNGSSSADANPVPGMVKYPENAGTVTAIQ----VSAGGYHSLAIDKNGNA 968

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQ---GLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
            WAWG N+ G+LG G T     P  VQ       +T V ++AGG+HS  +  +G+ + WG 
Sbjct: 969  WAWGGNDSGELGIGTTSKSEIPALVQYPKNAGAVTTVQVSAGGYHSLGIDKEGKTWAWGY 1028

Query: 259  GEHGRLGFGDNDKSSKMVPQKVNL 282
             + G+LG G    SS   P   NL
Sbjct: 1029 NQFGQLGNGTISNSSIPTPVAFNL 1052



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 19/183 (10%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG----LTLVDIAAGGWHSTALT 248
           LA+  DG  +AWG N YGQLG G    R++P+ V+  +G     T V ++AG   S A+ 
Sbjct: 680 LAVGSDGNAYAWGRNNYGQLGDGTLTQRNKPVIVKKPAGASADFTYVQVSAGDEQSLAVG 739

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV----NLLAGEDIVQVSCGGTHSVALTRD 304
            DG VY WG  E G+LG G +   S  VP +V    +  +G   VQVS G  HS+AL   
Sbjct: 740 SDGYVYAWGNNESGQLGNGSSGGYS-TVPLRVIDPNDPRSGLTAVQVSAGYYHSLALDAR 798

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G+I+++G    G LG G  + +     +P     PR+AG       +  +   GG H  A
Sbjct: 799 GNIWAWGFNQFGELGNGNNINSA----IPTLAQYPRDAGT------VTAIQVSGGFHHTA 848

Query: 365 IVE 367
            ++
Sbjct: 849 AID 851



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 105/254 (41%), Gaps = 38/254 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA-----GSRNSLAICDDGKT- 59
            +I AWG  + G+LG GNN          A  P    +V A     G  ++ AI   G T 
Sbjct: 800  NIWAWGFNQFGELGNGNNINS--AIPTLAQYPRDAGTVTAIQVSGGFHHTAAIDTKGNTW 857

Query: 60   -----------KTENIPSQVNA-------LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                          NI S +             + +Q + G  H L +D +G  +AWG N
Sbjct: 858  SWGWNWFGQLGNGNNIDSAIPVPVQYPRDAGTVRAIQVSAGADHSLIIDTKGNTWAWGWN 917

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
            + G+ G      D     +   +  P+     +   QV+AGG HS+ + + G+ W WG  
Sbjct: 918  QLGELGNGSSSAD--ANPVPGMVKYPENAG-TVTAIQVSAGGYHSLAIDKNGNAWAWGGN 974

Query: 161  ---PWPPGDIKQISVPVRVQ-----GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                   G   +  +P  VQ     G      ++ G +H+L + ++G  WAWG N++GQL
Sbjct: 975  DSGELGIGTTSKSEIPALVQYPKNAGAVTTVQVSAGGYHSLGIDKEGKTWAWGYNQFGQL 1034

Query: 213  GTGDTQPRSQPIPV 226
            G G     S P PV
Sbjct: 1035 GNGTISNSSIPTPV 1048


>gi|171915079|ref|ZP_02930549.1| RCC1 repeat domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 1933

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 157/340 (46%), Gaps = 23/340 (6%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQ 67
           +AW  G   Q   G N        V A E   V  V A     L +   G +    +P Q
Sbjct: 98  LAWSGGGMAQAVTGKNLAAGHAHTVVAREDGTVWGVGAAELGQLGVSLTGSSA---LPVQ 154

Query: 68  VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP 127
             +L++   V A  G  H  AV   G  + +G N +GQ G         G          
Sbjct: 155 AGSLTDVVCVTA--GAAHTAAVRSDGTLWMYGLNTFGQLG--------LGYASVSVWSPT 204

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGLEQVK 183
           Q  A   +   VAAG  H++VL  +G VW +G+        G       PV+  GL  V 
Sbjct: 205 QVGALSGVTADVAAGDLHTLVLKTDGTVWGFGENGVGNLGDGTTTGRVSPVQATGLTDVV 264

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            +A G+ H+LAL+ DG +WA+G N  GQLG G    R   + V  L+   +V IAA G H
Sbjct: 265 DLAAGSLHSLALKSDGTVWAFGANFEGQLGDGTNTMRLTAVQVSALT--DVVAIAAAGRH 322

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S AL  DG V+ +G  E G+LG  D   +S+  P +V+ L G  +V ++ GG HS+AL  
Sbjct: 323 SLALKSDGTVWAFGANEAGQLG--DGTTTSRNAPVQVSGLTG--VVAIAAGGAHSLALKA 378

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           DG +++FG   +G+LG G       P+E+ I   A   AG
Sbjct: 379 DGTVWAFGANTYGQLGDGSLTAGTVPVEMAITDVAAIAAG 418



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 154/343 (44%), Gaps = 41/343 (11%)

Query: 11  GSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI------ 64
           G+ E GQLG+           V+A     V  V AG+ ++ A+  DG      +      
Sbjct: 134 GAAELGQLGVSLTGSS--ALPVQAGSLTDVVCVTAGAAHTAAVRSDGTLWMYGLNTFGQL 191

Query: 65  -----------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                      P+QV ALS       A G  H L +   G  + +G N  G  G+     
Sbjct: 192 GLGYASVSVWSPTQVGALSGVT-ADVAAGDLHTLVLKTDGTVWGFGENGVGNLGD----G 246

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQ 169
             TGR      V P +      V  +AAG  HS+ L  +G VW +G  +      G    
Sbjct: 247 TTTGR------VSPVQATGLTDVVDLAAGSLHSLALKSDGTVWAFGANFEGQLGDGTNTM 300

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
               V+V  L  V  IA    H+LAL+ DG +WA+G NE GQLG G T  R+ P+ V GL
Sbjct: 301 RLTAVQVSALTDVVAIAAAGRHSLALKSDGTVWAFGANEAGQLGDGTTTSRNAPVQVSGL 360

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G  +V IAAGG HS AL  DG V+ +G   +G+L  GD   ++  VP +   +A  D+ 
Sbjct: 361 TG--VVAIAAGGAHSLALKADGTVWAFGANTYGQL--GDGSLTAGTVPVE---MAITDVA 413

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            ++ G  HSV +  DG ++  G    GRLG         PM V
Sbjct: 414 AIAAGAEHSVLMKADGTLWGVGYSAGGRLGGASPSPRKLPMPV 456



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 169/354 (47%), Gaps = 45/354 (12%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----------- 58
           WG GE+G   +G+      V  V+A     V  + AGS +SLA+  DG            
Sbjct: 233 WGFGENGVGNLGDGTTTGRVSPVQATGLTDVVDLAAGSLHSLALKSDGTVWAFGANFEGQ 292

Query: 59  ----TKTENIPS-QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
               T T  + + QV+AL  T +V  A  G H LA+   G  +A+G NE GQ G+     
Sbjct: 293 LGDGTNTMRLTAVQVSAL--TDVVAIAAAGRHSLALKSDGTVWAFGANEAGQLGD----- 345

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW-----TWGQPWPPGDIK 168
              G    R+   P + +    V  +AAGG HS+ L  +G VW     T+GQ    G + 
Sbjct: 346 ---GTTTSRNA--PVQVSGLTGVVAIAAGGAHSLALKADGTVWAFGANTYGQ-LGDGSLT 399

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             +VPV +  +  V  IA GA H++ ++ DG LW  G +  G+LG     PR  P+PV G
Sbjct: 400 AGTVPVEMA-ITDVAAIAAGAEHSVLMKADGTLWGVGYSAGGRLGGASPSPRKLPMPVSG 458

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           ++  T+  + AGG ++  +  +G V G+G    G+LG G    SS  VP +   L+G  +
Sbjct: 459 VT--TVATLKAGGDNTGVVRGNGAVLGFGYNHAGQLGNGGVLPSS--VPVQPTGLSG--V 512

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
             V  G  H+V    DG ++S+G    G+LG    VT G     P+ + A  +A
Sbjct: 513 RDVGVGYNHTVVAKTDGTVWSYGLNSLGQLG----VTAGASQLTPVQVTALSDA 562



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 178/435 (40%), Gaps = 104/435 (23%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           + S  ++ A+G+  +GQLG G N  R     V AL    V ++ A  R+SLA+       
Sbjct: 276 LKSDGTVWAFGANFEGQLGDGTNTMRLTAVQVSALT--DVVAIAAAGRHSLALKSDGTVW 333

Query: 54  ---------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T + N P QV+ L  T +V  A GG H LA+   G  +A+G N YG
Sbjct: 334 AFGANEAGQLGDGTTTSRNAPVQVSGL--TGVVAIAAGGAHSLALKADGTVWAFGANTYG 391

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+        G +    + +         V  +AAG  HSV++  +G +W  G     
Sbjct: 392 QLGD--------GSLTAGTVPVEMAITD---VAAIAAGAEHSVLMKADGTLWGVGYSAGG 440

Query: 161 ------------PWPPGDIKQI-------------------------------------- 170
                       P P   +  +                                      
Sbjct: 441 RLGGASPSPRKLPMPVSGVTTVATLKAGGDNTGVVRGNGAVLGFGYNHAGQLGNGGVLPS 500

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           SVPV+  GL  V+ + VG  H +  + DG +W++G N  GQLG   T   SQ  PVQ  +
Sbjct: 501 SVPVQPTGLSGVRDVGVGYNHTVVAKTDGTVWSYGLNSLGQLGV--TAGASQLTPVQVTA 558

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
                 +A G   S  L  DG V+G+G   +G LG G    SS+  P +V+     DI  
Sbjct: 559 LSDAKAVAVGYDFSLVLKTDGTVWGFGSNTNGTLGDG-TFVSSRATPAQVS--GTVDITA 615

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V+ G  HS  L  DG +++FG   +G+LG G   +   P++             G+    
Sbjct: 616 VAAGRGHSALLKSDGTVWTFGGNTYGQLGDGTTTSRYAPVQA-----------TGLTG-- 662

Query: 351 IAKLVACGGRHTLAI 365
            A  VA GGRHT+ +
Sbjct: 663 -AVAVAAGGRHTVVL 676



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 140/296 (47%), Gaps = 28/296 (9%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NSL         ++  P QV ALS+ K V  A+G    L +   G  + +G N  G  G+
Sbjct: 537 NSLGQLGVTAGASQLTPVQVTALSDAKAV--AVGYDFSLVLKTDGTVWGFGSNTNGTLGD 594

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                             P + +  + +  VAAG  HS +L  +G VWT+G         
Sbjct: 595 ---------GTFVSSRATPAQVSGTVDITAVAAGRGHSALLKSDGTVWTFGGNTYGQLGD 645

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G       PV+  GL     +A G  H + L+ DG +WA+G N  GQLG G T  R   +
Sbjct: 646 GTTTSRYAPVQATGLTGAVAVAAGGRHTVVLKGDGTVWAFGGNASGQLGDGTTTTRLTAV 705

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKM-VPQKVNL 282
            + GL+   +V IA G  H+ A+  DG V+  G+   G+LG G   D+ + + VP   + 
Sbjct: 706 QMSGLT--NVVAIAVGEEHTVAVRSDGTVWAAGKNASGQLGDGTVTDRLTAVQVPGVTHA 763

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           LA      V+ G  H++AL  DG + S+G G+ G+L   R+  TG P+ +P+N PA
Sbjct: 764 LA------VAAGRGHTLALKIDGTLLSWGAGEQGQL---REFGTGVPVSLPVNSPA 810



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 143/315 (45%), Gaps = 37/315 (11%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G     ++P Q   LS  + V   +G  H +     G  +++G N  GQ G        
Sbjct: 494 NGGVLPSSVPVQPTGLSGVRDV--GVGYNHTVVAKTDGTVWSYGLNSLGQLGVTAGASQL 551

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD---IKQI 170
           T          P +       + VA G   S+VL  +G VW +G       GD   +   
Sbjct: 552 T----------PVQVTALSDAKAVAVGYDFSLVLKTDGTVWGFGSNTNGTLGDGTFVSSR 601

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           + P +V G   +  +A G  H+  L+ DG +W +G N YGQLG G T  R  P+   GL+
Sbjct: 602 ATPAQVSGTVDITAVAAGRGHSALLKSDGTVWTFGGNTYGQLGDGTTTSRYAPVQATGLT 661

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G   V +AAGG H+  L  DG V+ +G    G+L  GD   ++++   +++ L   ++V 
Sbjct: 662 G--AVAVAAGGRHTVVLKGDGTVWAFGGNASGQL--GDGTTTTRLTAVQMSGL--TNVVA 715

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++ G  H+VA+  DG +++ G+   G+LG G        ++VP           GV    
Sbjct: 716 IAVGEEHTVAVRSDGTVWAAGKNASGQLGDGTVTDRLTAVQVP-----------GVTH-- 762

Query: 351 IAKLVACGGRHTLAI 365
            A  VA G  HTLA+
Sbjct: 763 -ALAVAAGRGHTLAL 776



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 110/238 (46%), Gaps = 32/238 (13%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV--------PVRVQGLEQVKLIAVG 188
           + +AAG  H+VV   +G VW  G      ++ Q+ V        PV+   L  V  +  G
Sbjct: 112 KNLAAGHAHTVVAREDGTVWGVGA----AELGQLGVSLTGSSALPVQAGSLTDVVCVTAG 167

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTAL 247
           A H  A++ DG LW +G N +GQLG G        P  V  LSG+T  D+AAG  H+  L
Sbjct: 168 AAHTAAVRSDGTLWMYGLNTFGQLGLGYASVSVWSPTQVGALSGVT-ADVAAGDLHTLVL 226

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V  WG GE+G    GD   + ++ P +   L   D+V ++ G  HS+AL  DG +
Sbjct: 227 KTDGTV--WGFGENGVGNLGDGTTTGRVSPVQATGL--TDVVDLAAGSLHSLALKSDGTV 282

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           ++FG    G+LG G                  R     V        +A  GRH+LA+
Sbjct: 283 WAFGANFEGQLGDGTNTM--------------RLTAVQVSALTDVVAIAAAGRHSLAL 326



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 116/277 (41%), Gaps = 37/277 (13%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           ++G    GQLG+     +     V AL     ++V  G   SL +  DG           
Sbjct: 533 SYGLNSLGQLGVTAGASQLTPVQVTALS--DAKAVAVGYDFSLVLKTDGTVWGFGSNTNG 590

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    +   P+QV+      I   A G  H   +   G  + +GGN YGQ G+   
Sbjct: 591 TLGDGTFVSSRATPAQVSG--TVDITAVAAGRGHSALLKSDGTVWTFGGNTYGQLGD--- 645

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                G    R    P +         VAAGG H+VVL  +G VW +G         G  
Sbjct: 646 -----GTTTSR--YAPVQATGLTGAVAVAAGGRHTVVLKGDGTVWAFGGNASGQLGDGTT 698

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                 V++ GL  V  IAVG  H +A++ DG +WA G N  GQLG G    R   + V 
Sbjct: 699 TTRLTAVQMSGLTNVVAIAVGEEHTVAVRSDGTVWAAGKNASGQLGDGTVTDRLTAVQVP 758

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           G++    + +AAG  H+ AL  DG +  WG GE G+L
Sbjct: 759 GVT--HALAVAAGRGHTLALKIDGTLLSWGAGEQGQL 793


>gi|111220790|ref|YP_711584.1| hypothetical protein FRAAL1334 [Frankia alni ACN14a]
 gi|111148322|emb|CAJ59994.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
          Length = 408

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 19/289 (6%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSN-TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           N L    +G      +P +V+ L+  T +V  A G +   AV   G A++WG N YGQ G
Sbjct: 54  NGLGQLGNGTITNSAVPVRVSGLTGLTDVVGVAAGRYAAYAVRRDGTAWSWGYNAYGQLG 113

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                    GRI   +  +P R +    V  +A G  +   L ++G VW WG        
Sbjct: 114 N--------GRIT--NSTVPVRVSGLTRVVALAGGAVNGYALRQDGTVWAWGYNNYGQLG 163

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G I    VPVRV GL +V  IA G     A+++DG +WAWG+N+ GQLG G T     P
Sbjct: 164 NGTITNSRVPVRVLGLSRVVAIAGGGTTAYAVRQDGTVWAWGDNDEGQLGNGTTANSPFP 223

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V GLS   ++ IA G     AL  DG V+ WG  + G+LG G    S+  VP  +  L
Sbjct: 224 VRVTGLS--AVIAIAGGQETGYALRRDGTVWAWGANDEGQLGNGTTVSST--VPVAIRNL 279

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            G   +  S  G    AL  DG  +++G  + G+LG G   T+  P++V
Sbjct: 280 TGVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTDDTSLVPVQV 328



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 132/278 (47%), Gaps = 19/278 (6%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+     +G+     +P +V+ L  T++V  A G  +  A+   G  +AWG N YGQ G 
Sbjct: 107 NAYGQLGNGRITNSTVPVRVSGL--TRVVALAGGAVNGYALRQDGTVWAWGYNNYGQLGN 164

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                            +P R      V  +A GGT +  + ++G VW WG         
Sbjct: 165 GTITNSR----------VPVRVLGLSRVVAIAGGGTTAYAVRQDGTVWAWGDNDEGQLGN 214

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G       PVRV GL  V  IA G     AL+ DG +WAWG N+ GQLG G T   + P+
Sbjct: 215 GTTANSPFPVRVTGLSAVIAIAGGQETGYALRRDGTVWAWGANDEGQLGNGTTVSSTVPV 274

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            ++ L+G+T +  ++ G    AL  DG  + WG    G+LG G +D S  +VP +V+   
Sbjct: 275 AIRNLTGVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTDDTS--LVPVQVSGST 332

Query: 285 G-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G   +  +S G     AL RDG ++++G    G+LG G
Sbjct: 333 GLVGVTAISAGSFSGYALRRDGTVWAWGSNFFGQLGNG 370



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/251 (35%), Positives = 124/251 (49%), Gaps = 19/251 (7%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTH 145
           LAV   G  ++WG N  GQ G         G I    + +       L  V  VAAG   
Sbjct: 40  LAVAGSGTEWSWGYNGLGQLGN--------GTITNSAVPVRVSGLTGLTDVVGVAAGRYA 91

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
           +  + R+G  W+WG         G I   +VPVRV GL +V  +A GA +  AL++DG +
Sbjct: 92  AYAVRRDGTAWSWGYNAYGQLGNGRITNSTVPVRVSGLTRVVALAGGAVNGYALRQDGTV 151

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           WAWG N YGQLG G       P+ V GLS   +V IA GG  + A+  DG V+ WG  + 
Sbjct: 152 WAWGYNNYGQLGNGTITNSRVPVRVLGLS--RVVAIAGGGTTAYAVRQDGTVWAWGDNDE 209

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G+LG G    S    P  V +     ++ ++ G     AL RDG ++++G  D G+LG G
Sbjct: 210 GQLGNGTTANS----PFPVRVTGLSAVIAIAGGQETGYALRRDGTVWAWGANDEGQLGNG 265

Query: 322 RKVTTGQPMEV 332
             V++  P+ +
Sbjct: 266 TTVSSTVPVAI 276



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 123/304 (40%), Gaps = 37/304 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           +WG    GQLG G          V  L   +V ++  G+ N  A+  DG           
Sbjct: 103 SWGYNAYGQLGNGRITNSTVPVRVSGLT--RVVALAGGAVNGYALRQDGTVWAWGYNNYG 160

Query: 60  -------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                      +P +V  LS  ++V  A GG    AV   G  +AWG N+ GQ G     
Sbjct: 161 QLGNGTITNSRVPVRVLGLS--RVVAIAGGGTTAYAVRQDGTVWAWGDNDEGQLGNGTTA 218

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                         P R      V  +A G      L R+G VW WG         G   
Sbjct: 219 NSP----------FPVRVTGLSAVIAIAGGQETGYALRRDGTVWAWGANDEGQLGNGTTV 268

Query: 169 QISVPVRVQGLEQVKLIAVGAFHN--LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
             +VPV ++ L  V  IA  +  N   AL+ DG  WAWG N  GQLG G       P+ V
Sbjct: 269 SSTVPVAIRNLTGVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTDDTSLVPVQV 328

Query: 227 QGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            G +GL  +  I+AG +   AL  DG V+ WG    G+LG G    +  + P +V+ +A 
Sbjct: 329 SGSTGLVGVTAISAGSFSGYALRRDGTVWAWGSNFFGQLGNGTTTPAFSLRPVQVSGIAR 388

Query: 286 EDIV 289
            D +
Sbjct: 389 ADAI 392



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 105/260 (40%), Gaps = 32/260 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG    GQLG G          V+ L   +V ++  G   + A+  DG        
Sbjct: 150 TVWAWGYNNYGQLGNGTITNSR--VPVRVLGLSRVVAIAGGGTTAYAVRQDGTVWAWGDN 207

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    T N P  V     + ++  A G     A+   G  +AWG N+ GQ G    
Sbjct: 208 DEGQLGNGTTANSPFPVRVTGLSAVIAIAGGQETGYALRRDGTVWAWGANDEGQLGN--- 264

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                G  +   + +  R    +     ++ G     L  +G  W WG         G  
Sbjct: 265 -----GTTVSSTVPVAIRNLTGVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTD 319

Query: 168 KQISVPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               VPV+V G   L  V  I+ G+F   AL+ DG +WAWG+N +GQLG G T P     
Sbjct: 320 DTSLVPVQVSGSTGLVGVTAISAGSFSGYALRRDGTVWAWGSNFFGQLGNGTTTPAFSLR 379

Query: 225 PVQGLSGLTLVDIAAGGWHS 244
           PVQ +SG+   D  AGG  S
Sbjct: 380 PVQ-VSGIARADAIAGGGFS 398



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 41/217 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVR---SVVAGSRNSL 51
           ++ AWG  ++GQLG G      +   V  L             Y +R   +V A   N  
Sbjct: 200 TVWAWGDNDEGQLGNGTTANSPFPVRVTGLSAVIAIAGGQETGYALRRDGTVWAWGANDE 259

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               +G T +  +P  +  L+    + A+  G    A+   G A+AWG N  GQ G    
Sbjct: 260 GQLGNGTTVSSTVPVAIRNLTGVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNG-- 317

Query: 112 RKDDTGRILRRDIVIPQRCAPK---LIVRQVAAGGTHSVVLTREGHVWTWGQPW------ 162
             DDT        ++P + +     + V  ++AG      L R+G VW WG  +      
Sbjct: 318 -TDDTS-------LVPVQVSGSTGLVGVTAISAGSFSGYALRRDGTVWAWGSNFFGQLGN 369

Query: 163 ----PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
               P   ++    PV+V G+ +   IA G F    L
Sbjct: 370 GTTTPAFSLR----PVQVSGIARADAIAGGGFSGYTL 402


>gi|119578071|gb|EAW57667.1| hCG2006901, isoform CRA_d [Homo sapiens]
          Length = 1677

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 444 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 503

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 504 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 548

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 549 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 608

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 609 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 668

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 669 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 726

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 727 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 766



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 433 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 472

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 473 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 532

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 533 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 592

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 593 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 650

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 651 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 699

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 700 KKVID-VAAGSTHCLALTE 717



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 501 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 560

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 561 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 620

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 621 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 672

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 673 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 732

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 733 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 766


>gi|301094633|ref|XP_002896421.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262109510|gb|EEY67562.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 1289

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 37/330 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------------EEPE 111
           P  V+  +   IVQ A GG H L +   G  Y++G NE  +                E  
Sbjct: 468 PKHVSLANGQPIVQVACGGEHLLYLTSTGDVYSYGDNEDKKVAAVTVATHTSTLPDNEST 527

Query: 112 RKDDTGRILRRDIV---IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
           R   T   L   +V     ++   +  +  VA G  HS+ +T  G ++TWG         
Sbjct: 528 RVVSTSSFLAPHLVEELALEKALHRTTIAMVACGAQHSLAITDAGELYTWGSGEDGRLGH 587

Query: 165 GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           GD++  +VP +V  L  E V   + G  H   L   G+++ +G    G+LG GD + R  
Sbjct: 588 GDMRDRAVPRKVMSLLRESVVSASCGGAHTAVLTAKGSVFTFGRGRNGRLGLGDNKWRDT 647

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           P P+ G    T + +   GW+ TA  D  G V+ WG+   G+ G G  D+  ++VP+ V+
Sbjct: 648 PHPIVGFPQGTSISLVVCGWNFTAALDRQGSVFTWGKTGEGQCGLGYVDRD-QVVPRCVD 706

Query: 282 LL---AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            L   AG  +V V+CG TH+V LT  G ++S+G G++G+LG G      QP+   + +PA
Sbjct: 707 KLRDVAGSSVVDVACGYTHTVVLTASGELYSWGLGEYGQLGTG---DVYQPLPARVQLPA 763

Query: 339 -PRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               A D + R      V CG  H++A  E
Sbjct: 764 DALCAPDQLAR------VYCGAFHSIATTE 787



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 168/394 (42%), Gaps = 77/394 (19%)

Query: 1   MASTTSIIAWGSGEDGQLG----------IGNNEEREWVCVVKALEPYKVRSVVAGSRNS 50
           + ST  + ++G  ED ++           + +NE    V     L P+ V  +       
Sbjct: 492 LTSTGDVYSYGDNEDKKVAAVTVATHTSTLPDNESTRVVSTSSFLAPHLVEELALE---- 547

Query: 51  LAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                              AL  T I   A G  H LA+ D G  Y WG  E G+ G   
Sbjct: 548 ------------------KALHRTTIAMVACGAQHSLAITDAGELYTWGSGEDGRLGH-- 587

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWGQ----PWPP 164
                 G +  RD  +P++    L    V+A  GG H+ VLT +G V+T+G+        
Sbjct: 588 ------GDM--RDRAVPRKVMSLLRESVVSASCGGAHTAVLTAKGSVFTFGRGRNGRLGL 639

Query: 165 GDIKQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           GD K    P  + G  Q   + L+  G     AL   G+++ WG    GQ G G    R 
Sbjct: 640 GDNKWRDTPHPIVGFPQGTSISLVVCGWNFTAALDRQGSVFTWGKTGEGQCGLGYVD-RD 698

Query: 222 QPIP-----VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           Q +P     ++ ++G ++VD+A G  H+  LT  GE+Y WG GE+G+LG GD     + +
Sbjct: 699 QVVPRCVDKLRDVAGSSVVDVACGYTHTVVLTASGELYSWGLGEYGQLGTGD---VYQPL 755

Query: 277 PQKVNL-----LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           P +V L      A + + +V CG  HS+A T    +F++G   +G  G G      +P  
Sbjct: 756 PARVQLPADALCAPDQLARVYCGAFHSIATTEQRVMFAWGLNSYGACGLGHTANKDKPER 815

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +           D    +    +VACG ++T+A+
Sbjct: 816 I-----------DCFSSQ-TELVVACGHKYTIAL 837



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 123/282 (43%), Gaps = 45/282 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +  WGSGEDG+LG G+  +R     V +L    V S   G  ++  +   G   T     
Sbjct: 574 LYTWGSGEDGRLGHGDMRDRAVPRKVMSLLRESVVSASCGGAHTAVLTAKGSVFTFGRGR 633

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWH-CLAVDDQGRAYAWGGNEYGQCGEE 109
                       + P  +        +   + GW+   A+D QG  + WG    GQCG  
Sbjct: 634 NGRLGLGDNKWRDTPHPIVGFPQGTSISLVVCGWNFTAALDRQGSVFTWGKTGEGQCG-- 691

Query: 110 PERKDDTGRILRRDIVIPQRCAPKL------IVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
                  G +  RD V+P RC  KL       V  VA G TH+VVLT  G +++WG    
Sbjct: 692 ------LGYV-DRDQVVP-RCVDKLRDVAGSSVVDVACGYTHTVVLTASGELYSWGLGEY 743

Query: 161 -PWPPGDIKQISVPVRVQ-------GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                GD+ Q  +P RVQ         +Q+  +  GAFH++A  E   ++AWG N YG  
Sbjct: 744 GQLGTGDVYQ-PLPARVQLPADALCAPDQLARVYCGAFHSIATTEQRVMFAWGLNSYGAC 802

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           G G T  + +P  +   S  T + +A G  ++ AL  +  +Y
Sbjct: 803 GLGHTANKDKPERIDCFSSQTELVVACGHKYTIALEVNASLY 844



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 41/314 (13%)

Query: 27  EWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----------------ENIPSQVNA 70
           E + + KAL    +  V  G+++SLAI D G+  T                  +P +V +
Sbjct: 542 EELALEKALHRTTIAMVACGAQHSLAITDAGELYTWGSGEDGRLGHGDMRDRAVPRKVMS 601

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC 130
           L    +V A+ GG H   +  +G  + +G    G+ G    +  DT   +   +  PQ  
Sbjct: 602 LLRESVVSASCGGAHTAVLTAKGSVFTFGRGRNGRLGLGDNKWRDTPHPI---VGFPQGT 658

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVK- 183
           +  L+V     G   +  L R+G V+TWG+           D  Q+ VP  V  L  V  
Sbjct: 659 SISLVV----CGWNFTAALDRQGSVFTWGKTGEGQCGLGYVDRDQV-VPRCVDKLRDVAG 713

Query: 184 ----LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ---PRSQPIPVQGLSGL-TLV 235
                +A G  H + L   G L++WG  EYGQLGTGD     P    +P   L     L 
Sbjct: 714 SSVVDVACGYTHTVVLTASGELYSWGLGEYGQLGTGDVYQPLPARVQLPADALCAPDQLA 773

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            +  G +HS A T+   ++ WG   +G  G G      K  P++++  + +  + V+CG 
Sbjct: 774 RVYCGAFHSIATTEQRVMFAWGLNSYGACGLGHTANKDK--PERIDCFSSQTELVVACGH 831

Query: 296 THSVALTRDGHIFS 309
            +++AL  +  +++
Sbjct: 832 KYTIALEVNASLYT 845


>gi|405972531|gb|EKC37295.1| X-linked retinitis pigmentosa GTPase regulator [Crassostrea gigas]
          Length = 663

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 20/278 (7%)

Query: 52  AICDDGKTKT-ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           AI   GK++  +N+P++   +   K    A G  H   V + GR + +G N++GQ G   
Sbjct: 14  AIFTFGKSRFGDNLPNKF-WVRGDKAKSVACGDEHTALVTESGRLFTFGVNDWGQLG--- 69

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
               D  ++  R   + ++  P+  V+ VA G  H++V T  G ++T+G          D
Sbjct: 70  ---IDEVKVSTRPCCV-KKLKPEK-VKVVACGRIHTIVATESGCLYTFGANGDGQLGVED 124

Query: 167 IKQISVPVRVQ-GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           I   + PV+V+    Q K +A GA H++AL +DG L+ WG    GQLG GD   +S P  
Sbjct: 125 IPSSNCPVKVECEPRQYKALAAGADHSVALTDDGELYVWGGGSEGQLGLGDIDDKSTPTL 184

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           +   +   ++ +A G +H+  +TD GEV+ +G G+ G+LG G  D    + P+KVN+   
Sbjct: 185 LS--TDNKVISVACGYYHTAFVTDVGEVFTFGEGDGGKLGQG-TDYGKAVAPKKVNI--P 239

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           E    V+CGG+H+V LT  G +++FG G +G+LG+  K
Sbjct: 240 EKAKSVACGGSHTVVLTECGKVYTFGEGGNGQLGHKNK 277



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 34/243 (13%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG-QPWPPGDIKQISVPVR---VQGL--EQVKLIAVGA 189
            + VA G  H+ ++T  G ++T+G   W    I ++ V  R   V+ L  E+VK++A G 
Sbjct: 38  AKSVACGDEHTALVTESGRLFTFGVNDWGQLGIDEVKVSTRPCCVKKLKPEKVKVVACGR 97

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H +   E G L+ +G N  GQLG  D    + P+ V+         +AAG  HS ALTD
Sbjct: 98  IHTIVATESGCLYTFGANGDGQLGVEDIPSSNCPVKVE-CEPRQYKALAAGADHSVALTD 156

Query: 250 DGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           DGE+Y WG G  G+LG GD +DKS+  +     L     ++ V+CG  H+  +T  G +F
Sbjct: 157 DGELYVWGGGSEGQLGLGDIDDKSTPTL-----LSTDNKVISVACGYYHTAFVTDVGEVF 211

Query: 309 SFGRGDHGRLG----YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +FG GD G+LG    YG+ V   +     +NIP              AK VACGG HT+ 
Sbjct: 212 TFGEGDGGKLGQGTDYGKAVAPKK-----VNIPEK------------AKSVACGGSHTVV 254

Query: 365 IVE 367
           + E
Sbjct: 255 LTE 257



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  +G  + GQLGI   +     C VK L+P KV+ V  G  +++   +           
Sbjct: 57  LFTFGVNDWGQLGIDEVKVSTRPCCVKKLKPEKVKVVACGRIHTIVATESGCLYTFGANG 116

Query: 56  DGKTKTENIPSQ---VNALSNTKIVQA-AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
           DG+   E+IPS    V      +  +A A G  H +A+ D G  Y WGG   GQ G    
Sbjct: 117 DGQLGVEDIPSSNCPVKVECEPRQYKALAAGADHSVALTDDGELYVWGGGSEGQLG---- 172

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-----PWPPGD 166
                G I   D   P   +    V  VA G  H+  +T  G V+T+G+          D
Sbjct: 173 ----LGDI--DDKSTPTLLSTDNKVISVACGYYHTAFVTDVGEVFTFGEGDGGKLGQGTD 226

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
             +   P +V   E+ K +A G  H + L E G ++ +G    GQLG  +     +  PV
Sbjct: 227 YGKAVAPKKVNIPEKAKSVACGGSHTVVLTECGKVYTFGEGGNGQLGHKNKYFYCE-TPV 285

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
                  +  IAAG  H+  +T+ G++Y +G G H +LG      S++  PQ+    +  
Sbjct: 286 WLNFKHKVTQIAAGENHTALVTEKGQLYTFGDGRHAKLGLDHECYSNQYFPQRSKRFSKF 345

Query: 287 DIVQVSCGGTHSVAL 301
            + QVSCGG H + L
Sbjct: 346 IVTQVSCGGCHMIVL 360



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 25/173 (14%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + E GA++ +G + +G     D  P         + G     +A G  H+  +T+ G ++
Sbjct: 9   IPESGAIFTFGKSRFG-----DNLPNKF-----WVRGDKAKSVACGDEHTALVTESGRLF 58

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G  + G+LG  +   S++  P  V  L  E +  V+CG  H++  T  G +++FG   
Sbjct: 59  TFGVNDWGQLGIDEVKVSTR--PCCVKKLKPEKVKVVACGRIHTIVATESGCLYTFGANG 116

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G+LG     ++  P++V      PR            K +A G  H++A+ +
Sbjct: 117 DGQLGVEDIPSSNCPVKVECE---PRQ----------YKALAAGADHSVALTD 156



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 26/131 (19%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAG    + + + G ++ +G+       FGDN      +P K   + G+    V+CG  
Sbjct: 1   MAAG--DDSEIPESGAIFTFGKSR-----FGDN------LPNKF-WVRGDKAKSVACGDE 46

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+  +T  G +F+FG  D G+LG      + +P  V    P               K+VA
Sbjct: 47  HTALVTESGRLFTFGVNDWGQLGIDEVKVSTRPCCVKKLKPEK------------VKVVA 94

Query: 357 CGGRHTLAIVE 367
           CG  HT+   E
Sbjct: 95  CGRIHTIVATE 105


>gi|119578072|gb|EAW57668.1| hCG2006901, isoform CRA_e [Homo sapiens]
          Length = 2948

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 415 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 474

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 475 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 519

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 520 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 579

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 580 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 639

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 640 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 697

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 698 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 737



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 404 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 443

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 444 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 503

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 504 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 563

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 564 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 621

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 622 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 670

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 671 KKVID-VAAGSTHCLALTE 688



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 472 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 531

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 532 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 591

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 592 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 643

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 644 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 703

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 704 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 737


>gi|119578070|gb|EAW57666.1| hCG2006901, isoform CRA_c [Homo sapiens]
          Length = 2984

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 444 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 503

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 504 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 548

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 549 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 608

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 609 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 668

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 669 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 726

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 727 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 766



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 433 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 472

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 473 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 532

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 533 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 592

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 593 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 650

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 651 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 699

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 700 KKVID-VAAGSTHCLALTE 717



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 501 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 560

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 561 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 620

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 621 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 672

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 673 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 732

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 733 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 766


>gi|297797029|ref|XP_002866399.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297312234|gb|EFH42658.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 445

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 156/331 (47%), Gaps = 43/331 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G+  +  +P+         I   A+GG H +A+  QG  + WG   +G  G         
Sbjct: 135 GQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGH-------- 186

Query: 117 GRILRRDIVIPQRCAP---KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ---- 169
            ++  R++V   RC        +  +A  GTH+  +T  G ++ WG+    GD +     
Sbjct: 187 -KVYTRELV--PRCVDGSWDCKISAIATSGTHTAAITESGELYMWGRE--EGDGRLGLGP 241

Query: 170 ---------ISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                    +SVP +V+ L   V  ++ G F  +AL ++G LW WG N   +LG GD   
Sbjct: 242 GRGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLG 301

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             +P+PV  L  + +  IA GG+HS ALT +G+V  WG G HG+L  G++   ++ +P +
Sbjct: 302 GWEPLPVPSLDSVRITQIACGGYHSLALTKEGKVLSWGHGGHGQL--GNSSLRNQKIPTE 359

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPA 338
           +  LA + IV ++CGG+ S A+T  G ++ +G     +LG  G       P+EV      
Sbjct: 360 IEALADKKIVFIACGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEV------ 413

Query: 339 PRNAGDGVDRRWIAKL--VACGGRHTLAIVE 367
             N     D R   K+  V+ G  H L +V 
Sbjct: 414 --NFLTEEDERQPHKVISVSIGASHALCLVS 442



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 174/384 (45%), Gaps = 67/384 (17%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN 63
           T  + +WG G  GQLG G  E R        + P  V +++  S  S ++          
Sbjct: 47  TLQLFSWGRGASGQLGGGIEEIR--------MYPSPVANLLLRSDQSFSLA--------Q 90

Query: 64  IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            P +++A S++  +  + G +H  L +D  G  + WG  + G+ G   E           
Sbjct: 91  TPGRIDAESSSFPIGISCGLFHSGLTID--GDLWIWGKGDGGRLGFGQENS--------- 139

Query: 123 DIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------V 172
            + +P       +  +R +A GG HSV LT +G V+TWG     G    +         V
Sbjct: 140 -VFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY----GGFGALGHKVYTRELV 194

Query: 173 PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNE-------YGQLGTGDTQPRSQP 223
           P  V G    K+  IA    H  A+ E G L+ WG  E           G  +    S P
Sbjct: 195 PRCVDGSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVP 254

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V+ L+ + +  ++ GG+ + ALT +G+++ WG   +  LG GDN    + +P  V  L
Sbjct: 255 SKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPLP--VPSL 311

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
               I Q++CGG HS+ALT++G + S+G G HG+LG     ++ +  ++P  I A     
Sbjct: 312 DSVRITQIACGGYHSLALTKEGKVLSWGHGGHGQLGN----SSLRNQKIPTEIEAL---- 363

Query: 344 DGVDRRWIAKLVACGGRHTLAIVE 367
              D++ +   +ACGG  + AI +
Sbjct: 364 --ADKKIV--FIACGGSSSAAITD 383



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 85/196 (43%), Gaps = 44/196 (22%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT------------KTENI----PSQVNALSNTK 75
           VKAL    V SV  G   ++A+  +G+             + +N+    P  V +L + +
Sbjct: 257 VKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPLPVPSLDSVR 315

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP---QRCAP 132
           I Q A GG+H LA+  +G+  +WG   +GQ G    R             IP   +  A 
Sbjct: 316 ITQIACGGYHSLALTKEGKVLSWGHGGHGQLGNSSLRNQK----------IPTEIEALAD 365

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL-------- 179
           K IV  +A GG+ S  +T  G +W WG     Q   PG  +  + PV V  L        
Sbjct: 366 KKIVF-IACGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNFLTEEDERQP 424

Query: 180 EQVKLIAVGAFHNLAL 195
            +V  +++GA H L L
Sbjct: 425 HKVISVSIGASHALCL 440


>gi|242008674|ref|XP_002425127.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
 gi|212508801|gb|EEB12389.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]
          Length = 1044

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 159/330 (48%), Gaps = 39/330 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY--KVRSVVAGSRNSLAICDDGKT----- 59
           +  WGS   G+LG+G  E  +    ++    Y   V  V  G  +++ +   G+      
Sbjct: 1   MYCWGSTVHGELGLGGIEHDQIFAPIEHTFKYASNVSQVTMGENHTVMLTKSGEVFSCGN 60

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                    K    P +V  L   +I + + GG H LA ++ G+ + WG + +GQ G   
Sbjct: 61  NDLDQLGHKKQRTKPEKVEGLDFYRITKISCGGNHTLAFNEWGQLFGWGSDSHGQLG--- 117

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI--- 167
              + T + L + I    +      + Q++ G  HS+ LT  G +++WG  +  G +   
Sbjct: 118 --FNGTTQPLPKII----KSLATFHIVQISCGKNHSLALTNNGELYSWGGNYD-GQLGLG 170

Query: 168 ------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                 KQ ++   + G+  +  IA G+ H+ AL + GA++ WG N YGQLG  D + + 
Sbjct: 171 MRSEYEKQPTLIKSLLGIP-IAFIACGSNHSFALSKSGAIYGWGKNTYGQLGLNDEENKL 229

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ L  + +  IA G   S  L+ DG V+  G G +G+LG G    S++++P+K+ 
Sbjct: 230 HPTQLKTLRSIRVKYIACGEDFSAFLSADGGVFTCGAGMYGQLGHGST--SNEILPRKIM 287

Query: 282 LLAGEDIVQVSCGGTHSVALT-RDGHIFSF 310
            L G  + QVSCG  H++AL    G ++SF
Sbjct: 288 ELMGSTVTQVSCGKRHTLALVPSRGRVYSF 317



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 50/309 (16%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           + + Q  +G  H + +   G  ++ G N+  Q G + +R              P++    
Sbjct: 34  SNVSQVTMGENHTVMLTKSGEVFSCGNNDLDQLGHKKQRTK------------PEKVEGL 81

Query: 134 LIVR--QVAAGGTHSVVLTREGHVWTWG-------------QPWPPGDIKQISVPVRVQG 178
              R  +++ GG H++     G ++ WG             QP P   IK ++    VQ 
Sbjct: 82  DFYRITKISCGGNHTLAFNEWGQLFGWGSDSHGQLGFNGTTQPLP-KIIKSLATFHIVQ- 139

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDI 237
                 I+ G  H+LAL  +G L++WG N  GQLG G  ++   QP  ++ L G+ +  I
Sbjct: 140 ------ISCGKNHSLALTNNGELYSWGGNYDGQLGLGMRSEYEKQPTLIKSLLGIPIAFI 193

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A G  HS AL+  G +YGWG+  +G+LG   ND+ +K+ P ++  L    +  ++CG   
Sbjct: 194 ACGSNHSFALSKSGAIYGWGKNTYGQLGL--NDEENKLHPTQLKTLRSIRVKYIACGEDF 251

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           S  L+ DG +F+ G G +G+LG+G       P ++          G  V +      V+C
Sbjct: 252 SAFLSADGGVFTCGAGMYGQLGHGSTSNEILPRKIM------ELMGSTVTQ------VSC 299

Query: 358 GGRHTLAIV 366
           G RHTLA+V
Sbjct: 300 GKRHTLALV 308



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 68/218 (31%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPV---------------------------------- 226
           ++ WG+  +G+LG G  +      P+                                  
Sbjct: 1   MYCWGSTVHGELGLGGIEHDQIFAPIEHTFKYASNVSQVTMGENHTVMLTKSGEVFSCGN 60

Query: 227 ------------------QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
                             +GL    +  I+ GG H+ A  + G+++GWG   HG+LGF  
Sbjct: 61  NDLDQLGHKKQRTKPEKVEGLDFYRITKISCGGNHTLAFNEWGQLFGWGSDSHGQLGF-- 118

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG-RKVTTG 327
            + +++ +P+ +  LA   IVQ+SCG  HS+ALT +G ++S+G    G+LG G R     
Sbjct: 119 -NGTTQPLPKIIKSLATFHIVQISCGKNHSLALTNNGELYSWGGNYDGQLGLGMRSEYEK 177

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           QP  +   +  P               +ACG  H+ A+
Sbjct: 178 QPTLIKSLLGIP------------IAFIACGSNHSFAL 203



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG   HG LG G  +      P +       ++ QV+ G  H+V LT+ G +FS G 
Sbjct: 1   MYCWGSTVHGELGLGGIEHDQIFAPIEHTFKYASNVSQVTMGENHTVMLTKSGEVFSCGN 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            D  +LG+ ++ T  + +E             G+D   I K ++CGG HTLA  EW
Sbjct: 61  NDLDQLGHKKQRTKPEKVE-------------GLDFYRITK-ISCGGNHTLAFNEW 102



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 17/115 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           ++ + +I  WG    GQLG+ + E +     +K L   +V+ +  G   S  +  D    
Sbjct: 203 LSKSGAIYGWGKNTYGQLGLNDEENKLHPTQLKTLRSIRVKYIACGEDFSAFLSADGGVF 262

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAW 98
                       G T  E +P ++  L  + + Q + G  H LA V  +GR Y++
Sbjct: 263 TCGAGMYGQLGHGSTSNEILPRKIMELMGSTVTQVSCGKRHTLALVPSRGRVYSF 317


>gi|443704116|gb|ELU01328.1| hypothetical protein CAPTEDRAFT_228560 [Capitella teleta]
          Length = 1874

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 158/334 (47%), Gaps = 56/334 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + +V AL+ + V                         
Sbjct: 1041 TVLACGEGSYGRLGQGNSDDLHSLTIVSALQGFVV------------------------- 1075

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H LA+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 1076 --------TQLVTSVGSDGHSLALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 1127

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + VI           Q+A G  HS V+T +G + T+G         G +     P RV+ 
Sbjct: 1128 EEVI-----------QIACGFKHSAVVTVDGKLLTFGNGDYGRLGLGTVCNRKTPERVKA 1176

Query: 179  LEQVKL--IAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE   +  +A G  H + +  DG+  WA+G+ +YG+LG G+T  +S P+ ++ LSGL + 
Sbjct: 1177 LENYHIGHVACGLNHTVCVSADGSTTWAFGDGDYGKLGLGNTSAKSTPVKIEALSGLKVK 1236

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG V  WG+     +G  +        PQKV  LAG  I +V  G 
Sbjct: 1237 KVACGTQFSVALTRDGFVLTWGQDR--LIGQTEAQMRGHCTPQKVTTLAGHFIEEVVVGS 1294

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
             H++ALT DG+++ +G    G+LG G   T  +P
Sbjct: 1295 EHTLALTSDGNVWGWGLNADGQLGLGHTGTVREP 1328



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 40/302 (13%)

Query: 79   AAIGGWHCLAVDD-----QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
            AAI  W     DD        AY WGG  +GQ  E             R ++ P   +  
Sbjct: 972  AAIIAWSVQHPDDWQMGGSCDAYLWGGGRHGQLCEAG-----------RSVLTPLHTSSF 1020

Query: 134  LIVRQVAAGGTHSVVLTREGHVWTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLI- 185
               +Q+  G   + V+   G V   G+            D+  +++   +QG    +L+ 
Sbjct: 1021 SSAQQIICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHSLTIVSALQGFVVTQLVT 1080

Query: 186  AVGAF-HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
            +VG+  H+LAL E G +++WG+ +YG+LG G++  + +P  ++ L G  ++ IA G  HS
Sbjct: 1081 SVGSDGHSLALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVIQIACGFKHS 1140

Query: 245  TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
              +T DG++  +G G++GRLG G     ++  P++V  L    I  V+CG  H+V ++ D
Sbjct: 1141 AVVTVDGKLLTFGNGDYGRLGLG--TVCNRKTPERVKALENYHIGHVACGLNHTVCVSAD 1198

Query: 305  GH-IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            G   ++FG GD+G+LG G       P+++         A  G+      K VACG + ++
Sbjct: 1199 GSTTWAFGDGDYGKLGLGNTSAKSTPVKI--------EALSGLK----VKKVACGTQFSV 1246

Query: 364  AI 365
            A+
Sbjct: 1247 AL 1248



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 120/264 (45%), Gaps = 32/264 (12%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
            + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK  T     
Sbjct: 1097 VFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVIQIACGFKHSAVVTVDGKLLTFGNGD 1156

Query: 62   -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEYGQCGEE 109
                          P +V AL N  I   A G  H + V   G   +A+G  +YG+ G  
Sbjct: 1157 YGRLGLGTVCNRKTPERVKALENYHIGHVACGLNHTVCVSADGSTTWAFGDGDYGKLG-- 1214

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD--- 166
                   G    +   +       L V++VA G   SV LTR+G V TWGQ    G    
Sbjct: 1215 ------LGNTSAKSTPVKIEALSGLKVKKVACGTQFSVALTRDGFVLTWGQDRLIGQTEA 1268

Query: 167  -IKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
             ++    P +V  L    ++ + VG+ H LAL  DG +W WG N  GQLG G T    +P
Sbjct: 1269 QMRGHCTPQKVTTLAGHFIEEVVVGSEHTLALTSDGNVWGWGLNADGQLGLGHTGTVREP 1328

Query: 224  IPVQGL-SGLTLVDIAAGGWHSTA 246
              + GL S   +  I+AG  HS A
Sbjct: 1329 QLLGGLGSSEPIKQISAGRTHSAA 1352


>gi|321474724|gb|EFX85688.1| hypothetical protein DAPPUDRAFT_98215 [Daphnia pulex]
          Length = 1052

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 154/339 (45%), Gaps = 34/339 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G  ++      V+ L    I Q A G  H LA ++ G  +AWG N  GQ G   E     
Sbjct: 67  GHCRSRTRAEPVDGLEAHNITQVACGAQHTLAQNEWGEVFAWGSNSNGQLGLNVEESMMP 126

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQI 170
              + + +   Q       V Q+A G +HS+ LT  G ++ WG     G +         
Sbjct: 127 TPKMVKSLATKQ-------VVQIACGRSHSMALTNVGEIYCWGSN-SHGQLGLGSSGTPE 178

Query: 171 SVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           + P  V+ L+ + +  I+ GA  + A+   GA++ WG N +GQLG GDT  R QP  ++ 
Sbjct: 179 TKPCLVKLLQGIPISHISCGADFSFAVTPSGAVYGWGKNSFGQLGLGDTTDRPQPTQLKS 238

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L    +  I  G  H+ ALT DG V+ +G G +G+LG   +  +++M+P+KV  L G  +
Sbjct: 239 LRFQRVTYIRCGMDHTAALTRDGGVFTFGAGMYGQLGHCTS--ANEMLPRKVLELMGTTV 296

Query: 289 VQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV- 346
            Q+ CG  H++A     G I++FG G  G+LG         P  V        N+   V 
Sbjct: 297 TQICCGRCHTLAFVPSKGRIYAFGLGGSGQLGTKSTANVNSPQLVIGPWETSNNSIKDVK 356

Query: 347 --------------DRRWIAKLVACGGRHTLAIVEWQTE 371
                          +R + + + CGG  + ++V   TE
Sbjct: 357 DLATETAEALSAIQSKRVVVRNIFCGGDQSFSLVCPYTE 395



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 14/116 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WGR +HG LG G  ++     P+       +DIVQV CG  H++ + +DG +FSFG 
Sbjct: 1   MFCWGRMKHGELGLGGLEEEIITSPRASPFTLVDDIVQVGCGENHTILVMKDGKLFSFGL 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            D+G+LG+ R  T  +P+             DG++   I + VACG +HTLA  EW
Sbjct: 61  NDYGQLGHCRSRTRAEPV-------------DGLEAHNITQ-VACGAQHTLAQNEW 102



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 102/255 (40%), Gaps = 49/255 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           + AWGS  +GQLG+ N EE       +VK+L   +V  +  G  +S+A+ + G+      
Sbjct: 105 VFAWGSNSNGQLGL-NVEESMMPTPKMVKSLATKQVVQIACGRSHSMALTNVGEIYCWGS 163

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                         E  P  V  L    I   + G     AV   G  Y WG N +GQ G
Sbjct: 164 NSHGQLGLGSSGTPETKPCLVKLLQGIPISHISCGADFSFAVTPSGAVYGWGKNSFGQLG 223

Query: 108 --EEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
             +  +R   T  + LR   V   RC           G  H+  LTR+G V+T+G     
Sbjct: 224 LGDTTDRPQPTQLKSLRFQRVTYIRC-----------GMDHTAALTRDGGVFTFG----A 268

Query: 165 GDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLG 213
           G   Q+         +P +V  L    V  I  G  H LA     G ++A+G    GQLG
Sbjct: 269 GMYGQLGHCTSANEMLPRKVLELMGTTVTQICCGRCHTLAFVPSKGRIYAFGLGGSGQLG 328

Query: 214 TGDTQPRSQPIPVQG 228
           T  T   + P  V G
Sbjct: 329 TKSTANVNSPQLVIG 343



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 41/222 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+G+  +R     +K+L   +V  +  G  ++ A+  DG   T    
Sbjct: 210 AVYGWGKNSFGQLGLGDTTDRPQPTQLKSLRFQRVTYIRCGMDHTAALTRDGGVFTFGAG 269

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E +P +V  L  T + Q   G  H LA V  +GR YA+G    GQ G 
Sbjct: 270 MYGQLGHCTSANEMLPRKVLELMGTTVTQICCGRCHTLAFVPSKGRIYAFGLGGSGQLGT 329

Query: 109 EPERKDDTGRIL----------RRDI---------VIPQRCAPKLIVRQVAAGGTHSVVL 149
           +     ++ +++           +D+          +    + +++VR +  GG  S  L
Sbjct: 330 KSTANVNSPQLVIGPWETSNNSIKDVKDLATETAEALSAIQSKRVVVRNIFCGGDQSFSL 389

Query: 150 TREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFH 191
                V  + + +   D ++ +V  ++  +   ++  V A H
Sbjct: 390 -----VCPYTESFESADYREHAVATQILSIFPDEIKKVRALH 426


>gi|47216552|emb|CAG04730.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1036

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 168/365 (46%), Gaps = 64/365 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG+   GQLG+G  +E   V      EP K      G R    +CD G         
Sbjct: 1   MLCWGNASYGQLGLGGIDEEIVV------EPRKCE-FFHGKR----VCDVG--------- 40

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIV 125
                          G  H + + D G  Y  G N+ GQ G E  RK     + L   I+
Sbjct: 41  --------------CGLKHTVFLLDDGTVYTCGCNDLGQLGHEKSRKKPEHVVALDAQII 86

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLE 180
           +   C           G +H++ L  +G V++WG     Q       + + VP  ++ L 
Sbjct: 87  VAVSC-----------GESHTLALNDKGQVFSWGLGSNGQLGLNNFEECVRVPRNIKCLS 135

Query: 181 QVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDI 237
            V++  +A G +H+ AL + G +++WG N++GQLG G      S P  +Q L G+    +
Sbjct: 136 DVQIAQVACGYWHSHALSKGGQVFSWGQNQFGQLGLGMHGSSISTPQIIQSLQGIPFAQL 195

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           +AGG HS A+T  G V+GWG+ + G+LG   ND   +  P  +  L  + ++ VSCG  H
Sbjct: 196 SAGGAHSFAITLSGAVFGWGKNKFGQLGL--NDTKDRWFPALLKSLRSQRVIFVSCGEDH 253

Query: 298 SVALTRDGHIFSFGRGDHGRLGY---GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK- 353
           + ALT+   +F+FG G +G+LG+     ++   +  E+  N+    + G     RW+ + 
Sbjct: 254 TAALTKLRGVFTFGAGGYGQLGHNCTNHEINPRKVFELMGNVVTQISCG---STRWLLRP 310

Query: 354 -LVAC 357
            LV C
Sbjct: 311 PLVRC 315



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 20/184 (10%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +  G  H + L +DG ++  G N+ GQLG    + R +P  V  L    +V ++ G  H+
Sbjct: 39  VGCGLKHTVFLLDDGTVYTCGCNDLGQLG--HEKSRKKPEHVVALDAQIIVAVSCGESHT 96

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL D G+V+ WG G +G+LG  + ++  + VP+ +  L+   I QV+CG  HS AL++ 
Sbjct: 97  LALNDKGQVFSWGLGSNGQLGLNNFEECVR-VPRNIKCLSDVQIAQVACGYWHSHALSKG 155

Query: 305 GHIFSFGRGDHGRLG---YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           G +FS+G+   G+LG   +G  ++T Q ++    IP              A+L A GG H
Sbjct: 156 GQVFSWGQNQFGQLGLGMHGSSISTPQIIQSLQGIP-------------FAQLSA-GGAH 201

Query: 362 TLAI 365
           + AI
Sbjct: 202 SFAI 205



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG   +G+LG G  D+   + P+K     G+ +  V CG  H+V L  DG +++ G  D 
Sbjct: 4   WGNASYGQLGLGGIDEEIVVEPRKCEFFHGKRVCDVGCGLKHTVFLLDDGTVYTCGCNDL 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ +  +  +P  V             +D + I   V+CG  HTLA+
Sbjct: 64  GQLGHEK--SRKKPEHVV-----------ALDAQIIVA-VSCGESHTLAL 99


>gi|366164990|ref|ZP_09464745.1| Ig domain-containing protein [Acetivibrio cellulolyticus CD2]
          Length = 838

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 148/295 (50%), Gaps = 33/295 (11%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG  +    P QV  L   K + A+ GG HCLA+   G  +AWG N +GQ G++ +    
Sbjct: 265 DGTEENSETPVQVKGLKEIKRIAASYGG-HCLALKSDGTVWAWGNNSFGQLGDKTKETKL 323

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVR 175
              +L           PK  +  +A G + SV L ++G VWTWG            +P +
Sbjct: 324 EPVML--------DTLPK--IGDIAVGHSFSVALDKDGFVWTWGYDR--------ELPQK 365

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ---PRSQPIPVQGLSGL 232
           V G+  +  I+ G  H L L+ DG LW WG+ E   + +G  +     + P+ V+ L G 
Sbjct: 366 VGGISNIIDISAGQNHVLVLKSDGTLWTWGDIEGTPVYSGQVKGGTDLTLPVKVEELRG- 424

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +V I+A G HS AL DDG V+ W     G LG+ D+  S+ +VP KV+ L+G  + +++
Sbjct: 425 -VVAISAQGGHSAALKDDGSVFVW-----GDLGY-DSTISNPLVPYKVDELSG--VREIA 475

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
            G  H +AL  DG +++FG    G++G G  ++  +P     N   P    +G+D
Sbjct: 476 SGSGHLLALKDDGTLWAFGDNGCGQIGDGTAISRRKPSATLFN-RDPLLLSEGID 529



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 9/174 (5%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
            ++ G +H+  + ++G VW WG+         I  P RV GLE+V  ++ G  + LAL+ 
Sbjct: 193 HISGGYSHTAAIKKDGTVWVWGESLSG----NILTPERVNGLERVIDVSAGGGYTLALKA 248

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           DG +W+WG N+ G+LG G  +    P+ V+GL  +  +  + GG H  AL  DG V+ WG
Sbjct: 249 DGTVWSWGENQNGRLGDGTEENSETPVQVKGLKEIKRIAASYGG-HCLALKSDGTVWAWG 307

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
               G+L  GD  K +K+ P  ++ L    I  ++ G + SVAL +DG ++++G
Sbjct: 308 NNSFGQL--GDKTKETKLEPVMLDTLP--KIGDIAVGHSFSVALDKDGFVWTWG 357



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 15/227 (6%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWG+   GQLG    E +    ++  L   K+  +  G   S+A+  DG   
Sbjct: 297 LKSDGTVWAWGNNSFGQLGDKTKETKLEPVMLDTLP--KIGDIAVGHSFSVALDKDGFVW 354

Query: 61  T----ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           T      +P +V  +SN  I+  + G  H L +   G  + WG  E G      + K  T
Sbjct: 355 TWGYDRELPQKVGGISN--IIDISAGQNHVLVLKSDGTLWTWGDIE-GTPVYSGQVKGGT 411

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRV 176
                 D+ +P +      V  ++A G HS  L  +G V+ WG       I    VP +V
Sbjct: 412 ------DLTLPVKVEELRGVVAISAQGGHSAALKDDGSVFVWGDLGYDSTISNPLVPYKV 465

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
             L  V+ IA G+ H LAL++DG LWA+G+N  GQ+G G    R +P
Sbjct: 466 DELSGVREIASGSGHLLALKDDGTLWAFGDNGCGQIGDGTAISRRKP 512



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 25/129 (19%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+ A+  DG V+ WG    G +          + P++VN L  E ++ VS GG 
Sbjct: 194 ISGGYSHTAAIKKDGTVWVWGESLSGNI----------LTPERVNGL--ERVIDVSAGGG 241

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           +++AL  DG ++S+G   +GRLG G    T +  E P+ +   +          I ++ A
Sbjct: 242 YTLALKADGTVWSWGENQNGRLGDG----TEENSETPVQVKGLKE---------IKRIAA 288

Query: 357 CGGRHTLAI 365
             G H LA+
Sbjct: 289 SYGGHCLAL 297


>gi|224179015|gb|AAI72191.1| hect domain and RLD 2 [synthetic construct]
          Length = 2427

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 453 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 512

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 513 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 557

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 558 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 617

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 618 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 677

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 678 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 735

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 736 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 775



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 442 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 481

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 482 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 541

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 542 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 601

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 602 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 659

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 660 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 708

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 709 KKVID-VAAGSTHCLALTE 726



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 510 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 569

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 570 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 629

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 630 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 681

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 682 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 741

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 742 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 775


>gi|357460713|ref|XP_003600638.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
 gi|355489686|gb|AES70889.1| RCC1 and BTB domain-containing protein [Medicago truncatula]
          Length = 1032

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 148/328 (45%), Gaps = 53/328 (16%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + + +   +   A+GG H   V  QG  Y WG    G+CG   +R D        D
Sbjct: 294 VPKLLESTAMLDVQNVALGGNHAAIVTKQGEVYCWG---QGKCGRLGQRID-------MD 343

Query: 124 IVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------------KQ 169
           I  P+       + V+ VA G  H+  LT  G V+ WG      D+             +
Sbjct: 344 ISSPKIVDTLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSDLVDEGRIRSQWLTHK 403

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
           +S+PV  +G+  +  IA G +H   +   G L+ +G+  +G LG G     S P  V+ L
Sbjct: 404 LSLPV--EGIS-ISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGSYHSFSSPKEVESL 460

Query: 230 SGLTLVDIAAGGWHSTAL-----------TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            GL +  +A G WH+ A+           T  G+++ WG  + GRLG  DN   +K+VP 
Sbjct: 461 KGLCVRSVACGTWHTAAIIEISAERFKYNTSTGKLFTWGDADEGRLGHADN--VNKLVPT 518

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            V+ L   D VQVSCG   ++ALT  G +F+ G   +G+L        G P     ++  
Sbjct: 519 CVSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSAKYGQL--------GNP-----HVKD 565

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                +G+ ++   K+++CG  H   + 
Sbjct: 566 RAVVVEGMLKQEYVKMISCGSYHVAVLT 593



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 154/404 (38%), Gaps = 76/404 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK------ 60
           +  WG G+ G+LG   + +     +V  L   +V++V  G  ++ A+ D G+        
Sbjct: 325 VYCWGQGKCGRLGQRIDMDISSPKIVDTLSDIRVKNVACGEYHTCALTDSGEVYAWGNDV 384

Query: 61  ----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                           T  +   V  +S + I   A G WH   V   GR + +G   +G
Sbjct: 385 SCSDLVDEGRIRSQWLTHKLSLPVEGISISSI---ACGEWHTAIVSSCGRLFTYGDGTFG 441

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL-----------TREG 153
             G        + + +             L VR VA G  H+  +           T  G
Sbjct: 442 VLGHGSYHSFSSPKEVES--------LKGLCVRSVACGTWHTAAIIEISAERFKYNTSTG 493

Query: 154 HVWTWGQP----WPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNN 207
            ++TWG          D     VP  V  L     + V  G    LAL   G ++A G+ 
Sbjct: 494 KLFTWGDADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSA 553

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
           +YGQLG    + R+  + V+G+     V  I+ G +H   LT  G VY WG+GE+G LG 
Sbjct: 554 KYGQLGNPHVKDRA--VVVEGMLKQEYVKMISCGSYHVAVLTSSGSVYTWGKGENGELGL 611

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI--------------FSFGR 312
           GD +  ++  P  V  L    +  ++CG + +VA+     I              F F R
Sbjct: 612 GDTE--NRYTPCFVEALRDRQVDTITCGPSFTVAICLHKPISISDQSSCNGCRLPFGFTR 669

Query: 313 GDHGR----LGYGRKVTTGQPME---VPINIPAPRNAGDGVDRR 349
             H      L + R  ++ + M     P+   A R      +R+
Sbjct: 670 KKHNCYNCGLLFCRSCSSKKVMNASLAPVKSKAFRVCDSCFNRK 713



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 13/194 (6%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V+ +A+G  H   + + G ++ WG  + G+LG       S P  V  LS + + ++A G 
Sbjct: 306 VQNVALGGNHAAIVTKQGEVYCWGQGKCGRLGQRIDMDISSPKIVDTLSDIRVKNVACGE 365

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL-LAGEDIVQVSCGGTHSVA 300
           +H+ ALTD GEVY WG          +    S+ +  K++L + G  I  ++CG  H+  
Sbjct: 366 YHTCALTDSGEVYAWGNDVSCSDLVDEGRIRSQWLTHKLSLPVEGISISSIACGEWHTAI 425

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           ++  G +F++G G  G LG+G   +   P EV         +  G+      + VACG  
Sbjct: 426 VSSCGRLFTYGDGTFGVLGHGSYHSFSSPKEV--------ESLKGL----CVRSVACGTW 473

Query: 361 HTLAIVEWQTEESK 374
           HT AI+E   E  K
Sbjct: 474 HTAAIIEISAERFK 487



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 42/228 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           ++S   +  +G G  G LG G+         V++L+   VRSV  G+ ++ AI       
Sbjct: 426 VSSCGRLFTYGDGTFGVLGHGSYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEISAER 485

Query: 54  ---------------CDDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
                           D+G+        + +P+ V+ L +   VQ + G    LA+ + G
Sbjct: 486 FKYNTSTGKLFTWGDADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMG 545

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + +A G  +YGQ G  P  KD          V+ +    +  V+ ++ G  H  VLT  G
Sbjct: 546 KVFAMGSAKYGQLG-NPHVKDRA--------VVVEGMLKQEYVKMISCGSYHVAVLTSSG 596

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL 195
            V+TWG+        GD +    P  V+ L   QV  I  G    +A+
Sbjct: 597 SVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAI 644



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S+ S+  WG GE+G+LG+G+ E R   C V+AL   +V ++  G   ++AIC
Sbjct: 592 LTSSGSVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAIC 645


>gi|339010099|ref|ZP_08642670.1| copper amine oxidase domain protein [Brevibacillus laterosporus LMG
           15441]
 gi|338773369|gb|EGP32901.1| copper amine oxidase domain protein [Brevibacillus laterosporus LMG
           15441]
          Length = 392

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 151/314 (48%), Gaps = 35/314 (11%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           GKT +   P  V+ LS+  +V    G  H +A+   G  + WG + YG+ G E  +  + 
Sbjct: 71  GKTTS---PVPVDDLSDVLMVDT--GTSHTVALQKDGTVWTWGWSAYGELGNEKAKSTEK 125

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
                     P        V+QV AG   ++ L  +G VW +G+        G  +    
Sbjct: 126 ---------TPHHVKWLSDVKQVRAGENFTLALKEDGTVWAFGKNRSGQLGDGTTETRVK 176

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           PV+V GL  +  I  G   +LAL EDG +WAWGNN  GQLG G  +   QP+ V  L+  
Sbjct: 177 PVQVSGLTDIVAIDAGEEFSLALSEDGTVWAWGNNSVGQLGNGTREKALQPVQVSELT-- 234

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            ++ I+ G     A+T +G+VYGWG  + G+LG G N   S+  P  ++ +   D++ V 
Sbjct: 235 DVIAISTGEKQGYAVTSNGDVYGWGYNQ-GKLGDGTN--KSRNSPVLIDGIY--DVIAVD 289

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ-PMEVPINIPAPRNAGDGVDRRWI 351
            G  H++AL  DG ++++G   HG+LGYG  V     P +V +    P N    +D    
Sbjct: 290 SGKQHTLALKEDGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTEPLNQIVAID---- 345

Query: 352 AKLVACGGRHTLAI 365
                 GG H+ AI
Sbjct: 346 -----AGGFHSHAI 354



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 113/250 (45%), Gaps = 23/250 (9%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           +V A  +N      DG T+T   P QV+ L  T IV    G    LA+ + G  +AWG N
Sbjct: 154 TVWAFGKNRSGQLGDGTTETRVKPVQVSGL--TDIVAIDAGEEFSLALSEDGTVWAWGNN 211

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
             GQ G             R   + P + +    V  ++ G      +T  G V+ WG  
Sbjct: 212 SVGQLGNGT----------REKALQPVQVSELTDVIAISTGEKQGYAVTSNGDVYGWGYN 261

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                 G  K  + PV + G+  V  +  G  H LAL+EDG +WAWG N +GQLG G T 
Sbjct: 262 QGKLGDGTNKSRNSPVLIDGIYDVIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYG-TP 320

Query: 219 PRSQPIPVQGLSGLT-----LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
                 P Q     T     +V I AGG+HS A+  DG V+ WG   +G LG G + K  
Sbjct: 321 VNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGTVWSWGFNSNGELGLGHSKK-- 378

Query: 274 KMVPQKVNLL 283
           +M P K+  +
Sbjct: 379 QMYPAKIETI 388



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 51/256 (19%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ A+G    GQLG G  E R     V  L    + ++ AG   SLA+ +DG        
Sbjct: 154 TVWAFGKNRSGQLGDGTTETRVKPVQVSGLT--DIVAIDAGEEFSLALSEDGTVWAWGNN 211

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+ + + P QV+ L  T ++  + G     AV   G  Y WG N+ G+ G+ 
Sbjct: 212 SVGQLGNGTREKALQPVQVSEL--TDVIAISTGEKQGYAVTSNGDVYGWGYNQ-GKLGDG 268

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
             +                R +P LI     V  V +G  H++ L  +G VW WG     
Sbjct: 269 TNK---------------SRNSPVLIDGIYDVIAVDSGKQHTLALKEDGTVWAWGTNTHG 313

Query: 163 -----PPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                 P +       V ++    L Q+  I  G FH+ A+++DG +W+WG N  G+LG 
Sbjct: 314 QLGYGTPVNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGTVWSWGFNSNGELGL 373

Query: 215 GDTQPRSQPIPVQGLS 230
           G ++ +  P  ++ ++
Sbjct: 374 GHSKKQMYPAKIETIN 389


>gi|28874834|emb|CAC84086.1| ZR1 protein [Medicago sativa]
          Length = 1035

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 152/327 (46%), Gaps = 52/327 (15%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + + +   +   A+GG H   V  QG  Y WG    G+CG   +R D        D
Sbjct: 294 VPKLLESTAMLDVQNVALGGNHAAIVTKQGEVYCWG---QGKCGRLGQRID-------MD 343

Query: 124 IVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-----PPGDIK------QI 170
           I  P+       + V++VA G  H+  LT  G V+TWG+         G I+      + 
Sbjct: 344 ISSPKIVDSLSDIRVKKVACGEYHTCALTDSGDVYTWGKDSCSDLVDEGRIRSQWLTHKF 403

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S+PV  +G+  +  IA G +H   +   G L+ +G+  +G LG G+    S P  V+ L 
Sbjct: 404 SLPV--EGIS-ISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLK 460

Query: 231 GLTLVDIAAGGWHSTAL-----------TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           GL +  +A G WH+ A+           T  G+++ WG  + GRLG  DN   +K+VP  
Sbjct: 461 GLCVRSVACGTWHTAAIIEVSAERFKYNTSTGKLFTWGDADEGRLGHADN--VNKLVPTC 518

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V+ L   D VQVSCG   ++ALT  G +F+ G   +G+L        G P     ++   
Sbjct: 519 VSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSAKYGQL--------GNP-----HVKDR 565

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIV 366
               +G+ ++   K+++CG  H   + 
Sbjct: 566 AVVVEGMLKQEYVKMISCGSYHVAVLT 592



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 134/331 (40%), Gaps = 48/331 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---EN 63
           +  WG G+ G+LG   + +     +V +L   +V+ V  G  ++ A+ D G   T   ++
Sbjct: 325 VYCWGQGKCGRLGQRIDMDISSPKIVDSLSDIRVKKVACGEYHTCALTDSGDVYTWGKDS 384

Query: 64  IPSQVNA---------------LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
               V+                +    I   A G WH   V   GR + +G   +G  G 
Sbjct: 385 CSDLVDEGRIRSQWLTHKFSLPVEGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGH 444

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL-----------TREGHVWT 157
                  + + +             L VR VA G  H+  +           T  G ++T
Sbjct: 445 GNYHSFSSPKEVES--------LKGLCVRSVACGTWHTAAIIEVSAERFKYNTSTGKLFT 496

Query: 158 WGQP----WPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQ 211
           WG          D     VP  V  L     + V  G    LAL   G ++A G+ +YGQ
Sbjct: 497 WGDADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMGKVFAMGSAKYGQ 556

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           LG    + R+  + V+G+     V  I+ G +H   LT  G VY WG+GE+G LG GD +
Sbjct: 557 LGNPHVKDRA--VVVEGMLKQEYVKMISCGSYHVAVLTSSGSVYTWGKGENGELGLGDTE 614

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             ++  P  V  L    +  ++CG + +VA+
Sbjct: 615 --NRYTPCFVEALRDRQVDTITCGPSFTVAI 643



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V+ +A+G  H   + + G ++ WG  + G+LG       S P  V  LS + +  +A G 
Sbjct: 306 VQNVALGGNHAAIVTKQGEVYCWGQGKCGRLGQRIDMDISSPKIVDSLSDIRVKKVACGE 365

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL-LAGEDIVQVSCGGTHSVA 300
           +H+ ALTD G+VY WG+     L   +    S+ +  K +L + G  I  ++CG  H+  
Sbjct: 366 YHTCALTDSGDVYTWGKDSCSDL-VDEGRIRSQWLTHKFSLPVEGISISSIACGEWHTAI 424

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           ++  G +F++G G  G LG+G   +   P EV         +  G+      + VACG  
Sbjct: 425 VSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEV--------ESLKGL----CVRSVACGTW 472

Query: 361 HTLAIVEWQTEESK 374
           HT AI+E   E  K
Sbjct: 473 HTAAIIEVSAERFK 486



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 42/228 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------- 53
           ++S   +  +G G  G LG GN         V++L+   VRSV  G+ ++ AI       
Sbjct: 425 VSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVSAER 484

Query: 54  ---------------CDDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
                           D+G+        + +P+ V+ L +   VQ + G    LA+ + G
Sbjct: 485 FKYNTSTGKLFTWGDADEGRLGHADNVNKLVPTCVSQLVDYDFVQVSCGRMMTLALTNMG 544

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + +A G  +YGQ G  P  KD          V+ +    +  V+ ++ G  H  VLT  G
Sbjct: 545 KVFAMGSAKYGQLG-NPHVKDRA--------VVVEGMLKQEYVKMISCGSYHVAVLTSSG 595

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL 195
            V+TWG+        GD +    P  V+ L   QV  I  G    +A+
Sbjct: 596 SVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAI 643



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S+ S+  WG GE+G+LG+G+ E R   C V+AL   +V ++  G   ++AIC
Sbjct: 591 LTSSGSVYTWGKGENGELGLGDTENRYTPCFVEALRDRQVDTITCGPSFTVAIC 644


>gi|118397447|ref|XP_001031056.1| RCC1-like domain protein 3, HECT domain [Tetrahymena thermophila]
 gi|89285378|gb|EAR83393.1| RCC1-like domain protein 3, HECT domain [Tetrahymena thermophila
           SB210]
          Length = 1146

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 58/357 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW----------VCVVKALEPYKVRSVVAGSRNSLAICDD 56
           I AWG  E G+L  GN ++  +             +K +   +  S    +   L +C  
Sbjct: 545 IFAWGKNESGELSFGNQKQPFYNKPENPKNLDRIYIKQISTSQNHSACISANGELYVCGS 604

Query: 57  ---GKTKTENIP-------SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
              GK   E +          +      K++Q A G +H LA+ D  + Y+WGG  + + 
Sbjct: 605 ALHGKLGLEELTMANINKFQMIPIFKGIKVLQVACGDYHTLALTDTDQVYSWGGTLHKKV 664

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---QPWP 163
           G+   +     ++ ++ ++            QV  G  HS  +T+ G ++TWG   Q + 
Sbjct: 665 GQRSGKPAPIQQLNKKGVI------------QVDCGDYHSAAITQNGDIYTWGGGGQDYN 712

Query: 164 PGD-----IKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            G      +K I  P +++  E  K++ V  G FH +AL  +  L+ WG  E+G+LGT  
Sbjct: 713 KGQLGLGHVKDIENPEKLKFFEGKKIVKVSCGQFHTMALTSENELFGWGAGEFGELGT-- 770

Query: 217 TQPRSQPIPVQG------------LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           ++    PI V+             L   ++ +I  GG H+  LT++G +Y  G G  G+L
Sbjct: 771 SKHEYTPIRVKVNFNQYNILYENILFENSIQNIKCGGHHTLLLTNNGYIYSSGYGRQGQL 830

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G  +++   +   Q V  L  + I++++ G  HS+AL+    IF+ G G  G+LG G
Sbjct: 831 GLRNSENQCEF--QLVWTLTKKKIIKIAAGWNHSLALSDQNDIFACGHGARGQLGLG 885



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 46/292 (15%)

Query: 96  YAWGGNEYGQCG---------EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHS 146
           +AWG NE G+            +PE   +  RI                ++Q++    HS
Sbjct: 546 FAWGKNESGELSFGNQKQPFYNKPENPKNLDRIY---------------IKQISTSQNHS 590

Query: 147 VVLTREGHVWTWG---------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
             ++  G ++  G         +     +I +  +    +G++ ++ +A G +H LAL +
Sbjct: 591 ACISANGELYVCGSALHGKLGLEELTMANINKFQMIPIFKGIKVLQ-VACGDYHTLALTD 649

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
              +++WG   + ++G    Q   +P P+Q L+   ++ +  G +HS A+T +G++Y WG
Sbjct: 650 TDQVYSWGGTLHKKVG----QRSGKPAPIQQLNKKGVIQVDCGDYHSAAITQNGDIYTWG 705

Query: 258 RG----EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
            G      G+LG G         P+K+    G+ IV+VSCG  H++ALT +  +F +G G
Sbjct: 706 GGGQDYNKGQLGLGHVKDIEN--PEKLKFFEGKKIVKVSCGQFHTMALTSENELFGWGAG 763

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           + G LG  +   T  P+ V +N        + +      + + CGG HTL +
Sbjct: 764 EFGELGTSKHEYT--PIRVKVNFNQYNILYENILFENSIQNIKCGGHHTLLL 813



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 48/327 (14%)

Query: 11  GSGEDGQLGI-----GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD------GKT 59
           GS   G+LG+      N  + + + + K +   KV  V  G  ++LA+ D       G T
Sbjct: 603 GSALHGKLGLEELTMANINKFQMIPIFKGI---KVLQVACGDYHTLALTDTDQVYSWGGT 659

Query: 60  KTENI------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
             + +      P+ +  L+   ++Q   G +H  A+   G  Y WGG      G +   K
Sbjct: 660 LHKKVGQRSGKPAPIQQLNKKGVIQVDCGDYHSAAITQNGDIYTWGG------GGQDYNK 713

Query: 114 DDTGRILRRDIVIPQRCA---PKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIK 168
              G    +DI  P++      K IV+ V+ G  H++ LT E  ++ WG  +    G  K
Sbjct: 714 GQLGLGHVKDIENPEKLKFFEGKKIVK-VSCGQFHTMALTSENELFGWGAGEFGELGTSK 772

Query: 169 QISVPVRVQ-GLEQ-------------VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
               P+RV+    Q             ++ I  G  H L L  +G +++ G    GQLG 
Sbjct: 773 HEYTPIRVKVNFNQYNILYENILFENSIQNIKCGGHHTLLLTNNGYIYSSGYGRQGQLGL 832

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            +++ + +   V  L+   ++ IAAG  HS AL+D  +++  G G  G+LG GD +  S+
Sbjct: 833 RNSENQCEFQLVWTLTKKKIIKIAAGWNHSLALSDQNDIFACGHGARGQLGLGDEE--SR 890

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            +   V  L G++   +S GG HS A+
Sbjct: 891 TIFTHVVSLGGKNTATISAGGDHSWAV 917



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 32/213 (15%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE-----PE 111
           G  K    P ++      KIV+ + G +H +A+  +   + WG  E+G+ G       P 
Sbjct: 719 GHVKDIENPEKLKFFEGKKIVKVSCGQFHTMALTSENELFGWGAGEFGELGTSKHEYTPI 778

Query: 112 RKD---DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
           R     +   IL  +I+          ++ +  GG H+++LT  G++++ G        +
Sbjct: 779 RVKVNFNQYNILYENILFENS------IQNIKCGGHHTLLLTNNGYIYSSGYG------R 826

Query: 169 QISVPVR----------VQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
           Q  + +R          V  L + K+I  A G  H+LAL +   ++A G+   GQLG GD
Sbjct: 827 QGQLGLRNSENQCEFQLVWTLTKKKIIKIAAGWNHSLALSDQNDIFACGHGARGQLGLGD 886

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            + R+    V  L G     I+AGG HS A+ D
Sbjct: 887 EESRTIFTHVVSLGGKNTATISAGGDHSWAVLD 919



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 25/185 (13%)

Query: 192 NLALQEDGA-------LWAWGNNEYGQLGTGD-TQP-RSQPIPVQGLSGLTLVDIAAGGW 242
           N+ +Q +G        ++AWG NE G+L  G+  QP  ++P   + L  + +  I+    
Sbjct: 529 NVNVQNEGQGNSIKCYIFAWGKNESGELSFGNQKQPFYNKPENPKNLDRIYIKQISTSQN 588

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           HS  ++ +GE+Y  G   HG+LG  +   ++    Q + +  G  ++QV+CG  H++ALT
Sbjct: 589 HSACISANGELYVCGSALHGKLGLEELTMANINKFQMIPIFKGIKVLQVACGDYHTLALT 648

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
               ++S+G   H ++G      +G+P   PI           ++++ + + V CG  H+
Sbjct: 649 DTDQVYSWGGTLHKKVGQ----RSGKP--APIQ---------QLNKKGVIQ-VDCGDYHS 692

Query: 363 LAIVE 367
            AI +
Sbjct: 693 AAITQ 697


>gi|301113129|ref|XP_002998335.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262112629|gb|EEY70681.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 2353

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 168/337 (49%), Gaps = 23/337 (6%)

Query: 41  RSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           R V +  +NS      G T +     ++ AL   +I+Q   G  H + +   G+ +  G 
Sbjct: 562 REVWSCGQNSYGELGHGDTASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGKVFTCGY 621

Query: 101 NEYGQCGEE-PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
           N+ GQCG+    R      I + D    Q  A          G  H+++++ +G V T G
Sbjct: 622 NDNGQCGQGGTARVSHLSEIPKMDSGSSQAHAYN--------GCEHTILVSTDGRVATCG 673

Query: 160 QPWP----PGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGAL---WAWGNNEYG 210
             +      G+    SVP  ++ LE   V+L++   +H +   EDG L   + +G N+YG
Sbjct: 674 YNYRGQLGHGNTTSESVPKIIRSLENKIVRLVSCSYYHTVLACEDGNLQNLYTFGRNDYG 733

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG  D+  R  P  V+ LS   +V +A G +H+  +T  G+ + +G+ ++G+LG   + 
Sbjct: 734 QLGHNDSIDRKIPQFVEALSDQQIVSVACGQYHTMVVTASGKAFAFGKNDYGQLGI--DT 791

Query: 271 KSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR-KVTTGQ 328
             +++ P +V   L  ++ +++ CG  H++AL    H+F+FGR D+G+LG GR   ++  
Sbjct: 792 MENQLAPVQVRGGLERQECLEIRCGYYHTIALCSGAHLFAFGRNDYGQLGLGRSNASSTS 851

Query: 329 PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +++     +     D ++ + I + +ACG  HT+A+
Sbjct: 852 NLQLQQQRFSNARLIDELEGKDIVR-IACGCYHTIAV 887



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 192/399 (48%), Gaps = 67/399 (16%)

Query: 10  WGSGED--GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------ 61
           W  G++  G+LG G+   R+    ++AL+  ++  + AG+ +++ +  DGK  T      
Sbjct: 565 WSCGQNSYGELGHGDTASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGKVFTCGYNDN 624

Query: 62  ----ENIPSQVNALSN-------TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
               +   ++V+ LS        +    A  G  H + V   GR    G N  GQ G   
Sbjct: 625 GQCGQGGTARVSHLSEIPKMDSGSSQAHAYNGCEHTILVSTDGRVATCGYNYRGQLGHGN 684

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV---WTWGQPWPPGDI 167
              +   +I+R             IVR V+    H+V+   +G++   +T+G+     D 
Sbjct: 685 TTSESVPKIIR--------SLENKIVRLVSCSYYHTVLACEDGNLQNLYTFGR----NDY 732

Query: 168 KQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
            Q+         +P  V+ L  +Q+  +A G +H + +   G  +A+G N+YGQLG    
Sbjct: 733 GQLGHNDSIDRKIPQFVEALSDQQIVSVACGQYHTMVVTASGKAFAFGKNDYGQLGIDTM 792

Query: 218 QPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS--- 273
           + +  P+ V+G L     ++I  G +H+ AL     ++ +GR ++G+LG G ++ SS   
Sbjct: 793 ENQLAPVQVRGGLERQECLEIRCGYYHTIALCSGAHLFAFGRNDYGQLGLGRSNASSTSN 852

Query: 274 -KMVPQK------VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
            ++  Q+      ++ L G+DIV+++CG  H++A++ +G ++ FGR +HG+LG G   TT
Sbjct: 853 LQLQQQRFSNARLIDELEGKDIVRIACGCYHTIAVSDNGVMYVFGRNNHGQLGTGD--TT 910

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +    PI+        D V +R    LVA G  HT+ +
Sbjct: 911 ERVYPFPID--------DFVGKR--VALVAAGFYHTVVL 939



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 52/283 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +   G    GQLG GN        ++++LE   VR V     +++  C+DG  +      
Sbjct: 669 VATCGYNYRGQLGHGNTTSESVPKIIRSLENKIVRLVSCSYYHTVLACEDGNLQNLYTFG 728

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                           IP  V ALS+ +IV  A G +H + V   G+A+A+G N+YGQ G
Sbjct: 729 RNDYGQLGHNDSIDRKIPQFVEALSDQQIVSVACGQYHTMVVTASGKAFAFGKNDYGQLG 788

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
            +   ++    +  R  +  Q C       ++  G  H++ L    H++ +G+     D 
Sbjct: 789 ID-TMENQLAPVQVRGGLERQECL------EIRCGYYHTIALCSGAHLFAFGR----NDY 837

Query: 168 KQI-----------SVPVRVQGLEQVKL-----------IAVGAFHNLALQEDGALWAWG 205
            Q+           ++ ++ Q     +L           IA G +H +A+ ++G ++ +G
Sbjct: 838 GQLGLGRSNASSTSNLQLQQQRFSNARLIDELEGKDIVRIACGCYHTIAVSDNGVMYVFG 897

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            N +GQLGTGDT  R  P P+    G  +  +AAG +H+  LT
Sbjct: 898 RNNHGQLGTGDTTERVYPFPIDDFVGKRVALVAAGFYHTVVLT 940



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +W+ G N YG+LG GDT  R     +Q L    ++ I AG  H+  LT DG+V+  G  +
Sbjct: 564 VWSCGQNSYGELGHGDTASRKSFERIQALQQKEIIQIGAGNEHTVVLTADGKVFTCGYND 623

Query: 261 HGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +G+ G G   + S +  +P+   + +G        G  H++ ++ DG + + G    G+L
Sbjct: 624 NGQCGQGGTARVSHLSEIPK---MDSGSSQAHAYNGCEHTILVSTDGRVATCGYNYRGQL 680

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+G   TT +   VP  I +  N         I +LV+C   HT+   E
Sbjct: 681 GHGN--TTSE--SVPKIIRSLENK--------IVRLVSCSYYHTVLACE 717


>gi|74177548|dbj|BAB30989.3| unnamed protein product [Mus musculus]
          Length = 596

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 141/287 (49%), Gaps = 44/287 (15%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           Y+ G N +GQ G+   R+D +    R +   P +    L V  V+ G  HSV +  +G V
Sbjct: 1   YSCGDNSWGQLGQ---RRDQSTE--RPE---PIQALNDLHVDLVSCGKEHSVAVCHKGKV 52

Query: 156 WTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNE 208
           + WG         G+ K+IS +P +++ L  +K+I V  G +H+LAL EDG +++WG N 
Sbjct: 53  FPWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNS 112

Query: 209 YGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
            GQLG G    RSQ IP  V+ L G+ L  +AAGG HS AL+  G  +GWG    G+L  
Sbjct: 113 EGQLGLGKNS-RSQAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLAL 171

Query: 267 -GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            G+  K     P  +  L    ++ +SCG  H+  LT +G +F+FG    G+L       
Sbjct: 172 SGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQLQ------ 225

Query: 326 TGQPMEVPINIPAPRNAG------DGVDRRWIAKLVACGGRHTLAIV 366
                      P+PR+        +G+  R     + C   HT+A V
Sbjct: 226 -----------PSPRSGQRGPQLIEGIGGR--VSQIECASYHTIAYV 259



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 16/215 (7%)

Query: 157 TWGQPWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           +WGQ     D +    P  +Q L    V L++ G  H++A+   G ++ WG    GQLG 
Sbjct: 7   SWGQLGQRRD-QSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVFPWGAGSEGQLGI 65

Query: 215 GDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           G+ +  S  P  ++ L+G+ ++ ++ G +HS AL++DG V+ WGR   G+LG G N +S 
Sbjct: 66  GEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRS- 124

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEV 332
           + +PQKV  L G  + QV+ GGTHS AL+  G  F +G    G+L   G KV   + +  
Sbjct: 125 QAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVK--EQIYK 182

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           P +I A +N             ++CG  HT  + E
Sbjct: 183 PHSIGALKNLS--------VIYISCGYEHTAVLTE 209



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 48/309 (15%)

Query: 16  GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------------- 59
           GQLG   ++  E    ++AL    V  V  G  +S+A+C  GK                 
Sbjct: 9   GQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVFPWGAGSEGQLGIGEF 68

Query: 60  -KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
            +   +P+++ AL+  KI+Q + G +H LA+ + G  ++WG N  GQ G           
Sbjct: 69  KEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKN------- 121

Query: 119 ILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGD--IKQ 169
              R   IPQ+      + + QVAAGGTHS  L+  G  + W     GQ    G+   +Q
Sbjct: 122 --SRSQAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVKEQ 179

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           I  P  +  L+ + +I +  G  H   L E+G ++ +G N  GQL       +  P  ++
Sbjct: 180 IYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQLQPSPRSGQRGPQLIE 239

Query: 228 GLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK----VNL 282
           G+ G  +  I    +H+ A +   G+V   GRG         ++ + +  P +      L
Sbjct: 240 GIGG-RVSQIECASYHTIAYVYTTGQVVSLGRGPS-----HTSNPTHQEAPAENSDITCL 293

Query: 283 LAGEDIVQV 291
           LA ED+V +
Sbjct: 294 LAAEDLVDI 302



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 120/283 (42%), Gaps = 58/283 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +  WG+G +GQLGIG  +E  ++   +KAL   K+  V  G  +SLA+ +DG        
Sbjct: 52  VFPWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRN 111

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     ++++ IP +V +L    + Q A GG H  A+   G ++ WG N  GQ   
Sbjct: 112 SEGQLGLGKNSRSQAIPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLAL 171

Query: 109 EPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG------- 159
                  +G  ++  I  P        L V  ++ G  H+ VLT EG V+T+G       
Sbjct: 172 -------SGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 224

Query: 160 QPWPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG--- 215
           QP P    +    P  ++G+  +V  I   ++H +A       + +   +   LG G   
Sbjct: 225 QPSPRSGQRG---PQLIEGIGGRVSQIECASYHTIA-------YVYTTGQVVSLGRGPSH 274

Query: 216 DTQPRSQPIPVQG------LSGLTLVDIAA----GGWHSTALT 248
            + P  Q  P +       L+   LVDI       G H+  +T
Sbjct: 275 TSNPTHQEAPAENSDITCLLAAEDLVDIEVKDIFAGAHANFVT 317


>gi|421871589|ref|ZP_16303210.1| regulator of chromosome condensation family protein [Brevibacillus
           laterosporus GI-9]
 gi|372459473|emb|CCF12759.1| regulator of chromosome condensation family protein [Brevibacillus
           laterosporus GI-9]
          Length = 392

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 150/314 (47%), Gaps = 35/314 (11%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           GKT +   P  V+ LS+  +V    G  H +A+   G  + WG + YG+ G E  +  + 
Sbjct: 71  GKTTS---PVPVDDLSDVLMVDT--GTSHTVALQKDGTVWTWGWSAYGELGNEKAKSTEK 125

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV 172
                     P        V+QV AG   ++ L  +G VW +G+        G  +    
Sbjct: 126 ---------TPHHVKWLSDVKQVRAGENFTLALKEDGTVWAFGKNRSGQLGDGTTETRVK 176

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           PV+V GL  +  I  G   +LAL EDG +WAWGNN  GQLG G  +   QP+ V  L+  
Sbjct: 177 PVQVSGLTDIVAIDAGEEFSLALSEDGTVWAWGNNSVGQLGNGTREKALQPVQVSELT-- 234

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            ++ I+ G     A+T +G+VYGWG  + G+L  GD  K S   P  ++ +   D++ V 
Sbjct: 235 DVIAISTGEKQGYAVTSNGDVYGWGYNQ-GKL--GDGTKKSSNSPVLIDGIY--DVIAVD 289

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ-PMEVPINIPAPRNAGDGVDRRWI 351
            G  H++AL  DG ++++G   HG+LGYG  V     P +V +    P N    +D    
Sbjct: 290 SGKQHTLALKEDGTVWAWGTNTHGQLGYGTPVNYSMTPNQVFLESTEPLNQIVAID---- 345

Query: 352 AKLVACGGRHTLAI 365
                 GG H+ AI
Sbjct: 346 -----AGGFHSHAI 354



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 113/250 (45%), Gaps = 23/250 (9%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           +V A  +N      DG T+T   P QV+ L  T IV    G    LA+ + G  +AWG N
Sbjct: 154 TVWAFGKNRSGQLGDGTTETRVKPVQVSGL--TDIVAIDAGEEFSLALSEDGTVWAWGNN 211

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
             GQ G             R   + P + +    V  ++ G      +T  G V+ WG  
Sbjct: 212 SVGQLGNGT----------REKALQPVQVSELTDVIAISTGEKQGYAVTSNGDVYGWGYN 261

Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                 G  K  + PV + G+  V  +  G  H LAL+EDG +WAWG N +GQLG G T 
Sbjct: 262 QGKLGDGTKKSSNSPVLIDGIYDVIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYG-TP 320

Query: 219 PRSQPIPVQGLSGLT-----LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
                 P Q     T     +V I AGG+HS A+  DG V+ WG   +G LG G + K  
Sbjct: 321 VNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGTVWSWGFNSNGELGLGHSKK-- 378

Query: 274 KMVPQKVNLL 283
           +M P K+  +
Sbjct: 379 QMYPAKIETI 388



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 41/251 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ A+G    GQLG G  E R     V  L    + ++ AG   SLA+ +DG        
Sbjct: 154 TVWAFGKNRSGQLGDGTTETRVKPVQVSGLT--DIVAIDAGEEFSLALSEDGTVWAWGNN 211

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+ + + P QV+ L  T ++  + G     AV   G  Y WG N+ G+ G+ 
Sbjct: 212 SVGQLGNGTREKALQPVQVSEL--TDVIAISTGEKQGYAVTSNGDVYGWGYNQ-GKLGDG 268

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
            ++  ++          P        V  V +G  H++ L  +G VW WG     Q    
Sbjct: 269 TKKSSNS----------PVLIDGIYDVIAVDSGKQHTLALKEDGTVWAWGTNTHGQLGYG 318

Query: 165 GDIKQISVPVRV-----QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             +     P +V     + L Q+  I  G FH+ A+++DG +W+WG N  G+LG G ++ 
Sbjct: 319 TPVNYSMTPNQVFLESTEPLNQIVAIDAGGFHSHAIKKDGTVWSWGFNSNGELGLGHSKK 378

Query: 220 RSQPIPVQGLS 230
           +  P  ++ ++
Sbjct: 379 QMYPAKIETIN 389


>gi|145593744|ref|YP_001158041.1| cell wall anchor domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303081|gb|ABP53663.1| LPXTG-motif cell wall anchor domain [Salinispora tropica CNB-440]
          Length = 577

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 143/321 (44%), Gaps = 27/321 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           +G T     P +V+  + T +   A GG H LA+   G   AWG N  GQ G+       
Sbjct: 71  NGTTTNSTDPVEVSLPAGTLLTDIAGGGKHSLALTSTGSLLAWGNNANGQLGD------- 123

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQ 169
            G     +  +         V  +AAG  HS+ LT  G V  WG            D + 
Sbjct: 124 -GTTTSSNTPVAVDLPAGTEVVAIAAGNDHSLALTSTGAVLAWGDNSSGQLGDGTNDDRS 182

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
             V V +        IA G+ H+L+L   G+ +AWGNN+ GQLG   T   ++P+ V   
Sbjct: 183 TPVTVDLPTTSTTTAIAAGSVHSLSLTSTGSAFAWGNNDEGQLGDESTTSTNKPVNVALT 242

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G TL  IA G  HS  +T D     WG    G+LG G N  ++ + P  V L  G  + 
Sbjct: 243 TGTTLTAIAGGSAHSLGITSDNTAVAWGSNSQGQLGDGTN--TNALAPVNVALTTGTTVT 300

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            ++ G  HSVAL  +G   ++G    G+LG G  VT+  P+EV  ++P+           
Sbjct: 301 AIAAGLLHSVALLTNGTAATWGNNATGQLGNGNNVTSNTPVEV--SLPS---------GT 349

Query: 350 WIAKLVACGGRHTLAIVEWQT 370
            +  + A    HT+AI   +T
Sbjct: 350 TLTAIAANSSNHTVAITNTET 370



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 162/389 (41%), Gaps = 41/389 (10%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------ 55
           A T + + WG  + GQLG G          V       +  +  G ++SLA+        
Sbjct: 53  AVTDTALTWGQNDRGQLGNGTTTNSTDPVEVSLPAGTLLTDIAGGGKHSLALTSTGSLLA 112

Query: 56  ----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                     DG T + N P  V+  + T++V  A G  H LA+   G   AWG N  GQ
Sbjct: 113 WGNNANGQLGDGTTTSSNTPVAVDLPAGTEVVAIAAGNDHSLALTSTGAVLAWGDNSSGQ 172

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWP 163
            G+     DD      R   +            +AAG  HS+ LT  G  + WG      
Sbjct: 173 LGD--GTNDD------RSTPVTVDLPTTSTTTAIAAGSVHSLSLTSTGSAFAWGNNDEGQ 224

Query: 164 PGDIKQISV--PVRV--QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            GD    S   PV V       +  IA G+ H+L +  D    AWG+N  GQLG G    
Sbjct: 225 LGDESTTSTNKPVNVALTTGTTLTAIAGGSAHSLGITSDNTAVAWGSNSQGQLGDGTNTN 284

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P+ V   +G T+  IAAG  HS AL  +G    WG    G+LG G+N  S+   P +
Sbjct: 285 ALAPVNVALTTGTTVTAIAAGLLHSVALLTNGTAATWGNNATGQLGNGNNVTSNT--PVE 342

Query: 280 VNLLAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV--PINI 336
           V+L +G  +  ++   + H+VA+T      ++G    G+LG   +VTT   + +    N 
Sbjct: 343 VSLPSGTTLTAIAANSSNHTVAITNTETALAWGDNSFGQLGT--EVTTSGDVSIASSSNT 400

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P   N   G          A G  H+LA+
Sbjct: 401 PVAVNLSTGTTLTN----TAVGTNHSLAL 425



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 136/330 (41%), Gaps = 37/330 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + ST S++AWG+  +GQLG G          V      +V ++ AG+ +SLA+       
Sbjct: 104 LTSTGSLLAWGNNANGQLGDGTTTSSNTPVAVDLPAGTEVVAIAAGNDHSLALTSTGAVL 163

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P  V+  + +     A G  H L++   G A+AWG N+ G
Sbjct: 164 AWGDNSSGQLGDGTNDDRSTPVTVDLPTTSTTTAIAAGSVHSLSLTSTGSAFAWGNNDEG 223

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+E             +  +         +  +A G  HS+ +T +     WG     
Sbjct: 224 QLGDESTTS--------TNKPVNVALTTGTTLTAIAGGSAHSLGITSDNTAVAWGSNSQG 275

Query: 161 PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               G       PV V       V  IA G  H++AL  +G    WGNN  GQLG G+  
Sbjct: 276 QLGDGTNTNALAPVNVALTTGTTVTAIAAGLLHSVALLTNGTAATWGNNATGQLGNGNNV 335

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGF-----GD-NDK 271
             + P+ V   SG TL  IAA    H+ A+T+      WG    G+LG      GD +  
Sbjct: 336 TSNTPVEVSLPSGTTLTAIAANSSNHTVAITNTETALAWGDNSFGQLGTEVTTSGDVSIA 395

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           SS   P  VNL  G  +   + G  HS+AL
Sbjct: 396 SSSNTPVAVNLSTGTTLTNTAVGTNHSLAL 425


>gi|42568678|ref|NP_200895.2| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|10176914|dbj|BAB10107.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010005|gb|AED97388.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 445

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 171/381 (44%), Gaps = 66/381 (17%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKAL------------EPYKVRSVVAGSR--- 48
           T  + +WG G  GQLG G  E R +   V  L             P ++ +  +  R   
Sbjct: 47  TLQLFSWGRGASGQLGGGIEEIRMYPSPVANLLFRSDQSFSLAQTPGRIDADSSSFRIGI 106

Query: 49  ------NSLAICDD--------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA 88
                 + L I  D              G+  +  +P+         I   A+GG H +A
Sbjct: 107 SCGLFHSGLTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVA 166

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHS 146
           +  QG  + WG   +G  G          ++  R++V P+R        +  +A  GTH+
Sbjct: 167 LTHQGDVFTWGYGGFGALGH---------KVYTRELV-PRRVDDSWDCKISAIATSGTHT 216

Query: 147 VVLTREGHVWTWGQPWPPGDIKQ-------------ISVPVRVQGLE-QVKLIAVGAFHN 192
             +T  G ++ WG+    GD +              +SVP +V+ L   V  ++ G F  
Sbjct: 217 AAITESGELYMWGRE--EGDGRLGLGPGRGPNEGGGLSVPSKVKALTVPVASVSCGGFFT 274

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           +AL ++G LW WG N   +LG GD     +P+PV  L G+ +  IA GG+HS ALT++G+
Sbjct: 275 MALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGK 334

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V  WG G HG+L  G +   ++ VP ++  LA + IV ++ GG+ S A+T  G ++ +G 
Sbjct: 335 VLSWGHGGHGQL--GSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITDGGELWMWGN 392

Query: 313 GDHGRLGY-GRKVTTGQPMEV 332
               +LG  G       P+EV
Sbjct: 393 AKDFQLGVPGLPEIQTTPVEV 413



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 24/230 (10%)

Query: 149 LTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALW 202
           LT +G +W WG+        G    + VP      E+  ++ IA+G  H++AL   G ++
Sbjct: 115 LTIDGDLWIWGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVF 174

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE-- 260
            WG   +G LG         P  V       +  IA  G H+ A+T+ GE+Y WGR E  
Sbjct: 175 TWGYGGFGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGD 234

Query: 261 ---HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
                  G G N+     VP KV  L    +  VSCGG  ++ALT++G ++++G   +  
Sbjct: 235 GRLGLGPGRGPNEGGGLSVPSKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYE 293

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           LG G  +   +PM VP        + +GV        +ACGG H+LA+ E
Sbjct: 294 LGRGDNLGGWEPMPVP--------SLEGVR----ITQIACGGYHSLALTE 331



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 17/156 (10%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------- 59
           WG+  + +LG G+N        V +LE  ++  +  G  +SLA+ ++GK           
Sbjct: 286 WGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQ 345

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 + + +P+++ AL++ KIV  A GG    A+ D G  + WG  +  Q G     +
Sbjct: 346 LGSSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGLPE 405

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
             T  +    +     C P  ++  ++ G +H++ L
Sbjct: 406 IQTTPVEVNFLTEEDECQPHKVI-SISIGASHALCL 440


>gi|198420568|ref|XP_002123770.1| PREDICTED: similar to guanine nucleotide exchange factor p532,
           partial [Ciona intestinalis]
          Length = 2540

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 100/362 (27%), Positives = 162/362 (44%), Gaps = 45/362 (12%)

Query: 7   IIAWGSGEDGQLG---------------IGNNE--EREWVCVVKALEPYKVRSVVAGSRN 49
           + AWGS    QL                 GN++  E    C         VRS   GS  
Sbjct: 286 VYAWGSNSSHQLAELGSDKIVFPKKVKSFGNSQMLEAGQYCTFAVSGDGCVRSCGKGSYG 345

Query: 50  SLAICDDG-----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            L + D       KT   + P  +  +S++K         H LA+  +G  ++WG  +YG
Sbjct: 346 RLGLGDSNNQSTLKTIVFDPPQTIRKISSSKGSDG-----HTLALTTEGCIFSWGDGDYG 400

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           + G        + +I+   +        + IV  V+AG  HS  +T+EG ++TWG+    
Sbjct: 401 KLGHGSSLTHKSPKIIEGPLA-------RRIVVCVSAGYRHSACVTQEGQLFTWGEGDYG 453

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQP 219
               GD    +VPV V+ +     +  G+ H L L +DG  +W++G  + G+LG GDT  
Sbjct: 454 RLGLGDNTSRNVPVLVKDIASAGSVVCGSSHTLVLAQDGLTVWSFGAGDNGKLGHGDTSR 513

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
             +P  ++ ++G+    + AG  +S AL D G+V+ WG G    LG G  D ++ M P  
Sbjct: 514 VYRPKVIESINGMMFYKLCAGSQYSLALNDSGQVFSWGCG--ACLGCGSPD-ATFMKPTL 570

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           ++ L    +V ++ G  H +ALT +  ++ +G    G+ G G    T  P+ VP  +   
Sbjct: 571 IDELTFTRVVDITSGDGHCMALTHNNEVYCWGNNAMGQCGLGH---TNSPISVPTQVQQL 627

Query: 340 RN 341
            N
Sbjct: 628 NN 629



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 54/261 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG G+ G+LG+G+N  R    +VK +      SVV GS ++L +  DG T       
Sbjct: 444 LFTWGEGDYGRLGLGDNTSRNVPVLVKDIA--SAGSVVCGSSHTLVLAQDGLT------- 494

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                        +++G  + G+ G       DT R+ R  ++ 
Sbjct: 495 ----------------------------VWSFGAGDNGKLGH-----GDTSRVYRPKVI- 520

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG---DIKQISVPVRVQGLEQVK 183
                  ++  ++ AG  +S+ L   G V++WG     G          P  +  L   +
Sbjct: 521 --ESINGMMFYKLCAGSQYSLALNDSGQVFSWGCGACLGCGSPDATFMKPTLIDELTFTR 578

Query: 184 LIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVDIAAG 240
           ++ +  G  H +AL  +  ++ WGNN  GQ G G T  P S P  VQ L+ +T+  I+AG
Sbjct: 579 VVDITSGDGHCMALTHNNEVYCWGNNAMGQCGLGHTNSPISVPTQVQQLNNVTIHQISAG 638

Query: 241 GWHS---TALTDDGEVYGWGR 258
             HS   TA+  D  V  W R
Sbjct: 639 TSHSIAYTAMPSDRHVISWSR 659



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 29/177 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ ++G+G++G+LG G+        V++++       + AGS+ SLA+ D G+       
Sbjct: 494 TVWSFGAGDNGKLGHGDTSRVYRPKVIESINGMMFYKLCAGSQYSLALNDSGQVFSWGCG 553

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                     T   P+ ++ L+ T++V    G  HC+A+      Y WG N  GQCG   
Sbjct: 554 ACLGCGSPDATFMKPTLIDELTFTRVVDITSGDGHCMALTHNNEVYCWGNNAMGQCG--- 610

Query: 111 ERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLT---REGHVWTWGQPW 162
                 G      I +P +      + + Q++AG +HS+  T    + HV +W +P+
Sbjct: 611 -----LGHT-NSPISVPTQVQQLNNVTIHQISAGTSHSIAYTAMPSDRHVISWSRPY 661


>gi|196012989|ref|XP_002116356.1| hypothetical protein TRIADDRAFT_60369 [Trichoplax adhaerens]
 gi|190580947|gb|EDV21026.1| hypothetical protein TRIADDRAFT_60369 [Trichoplax adhaerens]
          Length = 4253

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 37/368 (10%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI 64
           + +  WGS    QLGI   E        K L P+   S     + +      G +  +N 
Sbjct: 405 SHVYVWGSNSSYQLGISEPE--------KMLIPHLTPSFANSEQGNYGRLGLGDSSNQNR 456

Query: 65  PSQVNALSNTKI---VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
           P  +      KI   V +     H LA+   GR Y+WG  +YG+ G        + ++  
Sbjct: 457 PKLIRFEHECKIKNLVSSKGSDGHTLAIASDGRIYSWGDGDYGKLGHGNHVTQKSPKL-- 514

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
             I+ P +     +VRQ+A G  HS  +T EG ++TWG         GD    S+P  V+
Sbjct: 515 --ILGPMQGK---VVRQIAVGYRHSAAITSEGLLYTWGDGDYGRLGHGDNHSRSIPTLVK 569

Query: 178 GLEQVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            +  V  ++ G+   + + +D   +W++G  + G+LG GDT    +P  +  L GL +  
Sbjct: 570 DITGVGSVSCGSSFTVVISQDATTVWSFGAGDNGKLGHGDTSRVYRPKVISNLQGLLIRK 629

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +      S ALT  G+V+ WG G    LG+G  D ++ +VP++++      I+ ++ G  
Sbjct: 630 VCCASQSSLALTSIGQVFVWGSGPC--LGYGQAD-ATFLVPKRLDEFQDLQIIDIAVGDN 686

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H +ALT D  ++S+G    G+ G G       P+ +P  +        G D   I + ++
Sbjct: 687 HCLALTCDNDVYSWGNNASGQCGLG---NNNSPVLLPRKV-------TGFDNHVIYQ-IS 735

Query: 357 CGGRHTLA 364
            G  H++A
Sbjct: 736 VGTSHSIA 743



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 80/283 (28%), Positives = 139/283 (49%), Gaps = 35/283 (12%)

Query: 95   AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            AY WGG  +GQ  E       +GR+    ++ P   +     +Q+  G   + V+  +G 
Sbjct: 3409 AYTWGGGRHGQLAE-------SGRL----VLQPTLTSSFSKAKQIHCGHNSTFVIEHDGT 3457

Query: 155  VWTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWG 205
            V   G+            D+ ++     +QG    +L        H+LAL E G +++WG
Sbjct: 3458 VLACGEGSYGRLGQGNSDDLPRLRPITALQGFVVTELATSTGLEGHSLALTETGEVFSWG 3517

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            + +YG+LG G+++ + +P  ++ L G  ++ +A G  HS  +T DG+++ +G  + GRLG
Sbjct: 3518 DGDYGKLGHGNSERQRRPRQIEALRGEDVLHVACGHKHSAIVTVDGKLFTFGASDLGRLG 3577

Query: 266  FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKV 324
             G+   S+K +P +V  L    +  ++CG  H+V +T D   +++FG G++G+LG GR  
Sbjct: 3578 LGNT--SNKKLPAQVTALQPIMVELIACGANHTVVVTTDRESVWTFGEGEYGQLGLGRTT 3635

Query: 325  TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                P  V           D   +  I K + CG R TLA+ +
Sbjct: 3636 AKMTPQYV-----------DAFSKLNIKK-ICCGARFTLALTK 3666



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 50/361 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDG-- 57
            M++      WG G  GQL     E    V        + K + +  G  ++  I  DG  
Sbjct: 3403 MSAKCEAYTWGGGRHGQLA----ESGRLVLQPTLTSSFSKAKQIHCGHNSTFVIEHDGTV 3458

Query: 58   ------------KTKTENIPS--QVNALSNTKIVQAAIGGW---HCLAVDDQGRAYAWGG 100
                        +  ++++P    + AL    + + A       H LA+ + G  ++WG 
Sbjct: 3459 LACGEGSYGRLGQGNSDDLPRLRPITALQGFVVTELATSTGLEGHSLALTETGEVFSWGD 3518

Query: 101  NEYGQCGE---EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
             +YG+ G    E +R+      LR + V+            VA G  HS ++T +G ++T
Sbjct: 3519 GDYGKLGHGNSERQRRPRQIEALRGEDVL-----------HVACGHKHSAIVTVDGKLFT 3567

Query: 158  WGQP----WPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQED-GALWAWGNNEYG 210
            +G         G+     +P +V  L+   V+LIA GA H + +  D  ++W +G  EYG
Sbjct: 3568 FGASDLGRLGLGNTSNKKLPAQVTALQPIMVELIACGANHTVVVTTDRESVWTFGEGEYG 3627

Query: 211  QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGD 268
            QLG G T  +  P  V   S L +  I  G   + ALT +G+VY  G   H R    F  
Sbjct: 3628 QLGLGRTTAKMTPQYVDAFSKLNIKKICCGARFTLALTKEGKVYSCG---HNRCNGIFEV 3684

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
            + + +   PQ+V  L+ + I  ++ G  H++ALT++G ++S+G    G+LG G+ +   +
Sbjct: 3685 DTQHADYYPQQVMALSEQFIEDIAAGYEHALALTKEGDVWSWGNDTDGQLGLGQTLPQRE 3744

Query: 329  P 329
            P
Sbjct: 3745 P 3745



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 129/274 (47%), Gaps = 36/274 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            +  T  + +WG G+ G+LG GN+E +     ++AL    V  V  G ++S  +  DGK  
Sbjct: 3507 LTETGEVFSWGDGDYGKLGHGNSERQRRPRQIEALRGEDVLHVACGHKHSAIVTVDGKLF 3566

Query: 59   --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGNEY 103
                          T  + +P+QV AL    +   A G  H + V  D+   + +G  EY
Sbjct: 3567 TFGASDLGRLGLGNTSNKKLPAQVTALQPIMVELIACGANHTVVVTTDRESVWTFGEGEY 3626

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            GQ G         GR   +  + PQ      KL ++++  G   ++ LT+EG V++ G  
Sbjct: 3627 GQLG--------LGRTTAK--MTPQYVDAFSKLNIKKICCGARFTLALTKEGKVYSCGHN 3676

Query: 162  WPPG----DIKQISV-PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
               G    D +     P +V  L +  ++ IA G  H LAL ++G +W+WGN+  GQLG 
Sbjct: 3677 RCNGIFEVDTQHADYYPQQVMALSEQFIEDIAAGYEHALALTKEGDVWSWGNDTDGQLGL 3736

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            G T P+ +P  +  L G  +  I+AG  HS A T
Sbjct: 3737 GQTLPQREPCLISSLQGKGIRQISAGHNHSAAWT 3770



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 55/333 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR---NSLAICDDGK---- 58
            +++A G G  G+LG GN+++   +  + AL+ + V  +   +    +SLA+ + G+    
Sbjct: 3457 TVLACGEGSYGRLGQGNSDDLPRLRPITALQGFVVTELATSTGLEGHSLALTETGEVFSW 3516

Query: 59   ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        ++ +  P Q+ AL    ++  A G  H   V   G+ + +G ++ G+ 
Sbjct: 3517 GDGDYGKLGHGNSERQRRPRQIEALRGEDVLHVACGHKHSAIVTVDGKLFTFGASDLGRL 3576

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT--REGHVWTWGQPWPP 164
            G         G    + +         ++V  +A G  H+VV+T  RE  VWT+G+    
Sbjct: 3577 G--------LGNTSNKKLPAQVTALQPIMVELIACGANHTVVVTTDRES-VWTFGE---- 3623

Query: 165  GDIKQISV--------PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
            G+  Q+ +        P  V    +  +K I  GA   LAL ++G +++ G+N    +  
Sbjct: 3624 GEYGQLGLGRTTAKMTPQYVDAFSKLNIKKICCGARFTLALTKEGKVYSCGHNRCNGIFE 3683

Query: 215  GDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             DTQ     P  V  LS   + DIAAG  H+ ALT +G+V+ WG    G+LG G      
Sbjct: 3684 VDTQHADYYPQQVMALSEQFIEDIAAGYEHALALTKEGDVWSWGNDTDGQLGLG------ 3737

Query: 274  KMVPQK----VNLLAGEDIVQVSCGGTHSVALT 302
            + +PQ+    ++ L G+ I Q+S G  HS A T
Sbjct: 3738 QTLPQREPCLISSLQGKGIRQISAGHNHSAAWT 3770



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 47/271 (17%)

Query: 92  QGRAYAWGGNEYGQCG-EEPER--------------KDDTGRILRRD---------IVIP 127
           +   Y WG N   Q G  EPE+              + + GR+   D         I   
Sbjct: 404 ESHVYVWGSNSSYQLGISEPEKMLIPHLTPSFANSEQGNYGRLGLGDSSNQNRPKLIRFE 463

Query: 128 QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL 179
             C  K +V    + G H++ +  +G +++WG     GD  ++          P  + G 
Sbjct: 464 HECKIKNLVSSKGSDG-HTLAIASDGRIYSWGD----GDYGKLGHGNHVTQKSPKLILGP 518

Query: 180 EQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q   V+ IAVG  H+ A+  +G L+ WG+ +YG+LG GD   RS P  V+ ++G+    
Sbjct: 519 MQGKVVRQIAVGYRHSAAITSEGLLYTWGDGDYGRLGHGDNHSRSIPTLVKDITGVG--S 576

Query: 237 IAAGGWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           ++ G   +  ++ D   V+ +G G++G+LG GD  +  +  P+ ++ L G  I +V C  
Sbjct: 577 VSCGSSFTVVISQDATTVWSFGAGDNGKLGHGDTSRVYR--PKVISNLQGLLIRKVCCAS 634

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
             S+ALT  G +F +G G    LGYG+   T
Sbjct: 635 QSSLALTSIGQVFVWGSGPC--LGYGQADAT 663



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 34/272 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--- 56
           +AS   I +WG G+ G+LG GN+  ++    ++  ++   VR +  G R+S AI  +   
Sbjct: 484 IASDGRIYSWGDGDYGKLGHGNHVTQKSPKLILGPMQGKVVRQIAVGYRHSAAITSEGLL 543

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G   + +IP+ V  ++    V      +  +   D    +++G  + 
Sbjct: 544 YTWGDGDYGRLGHGDNHSRSIPTLVKDITGVGSVSCG-SSFTVVISQDATTVWSFGAGDN 602

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           G+ G       DT R+ R  ++   +    L++R+V      S+ LT  G V+ WG    
Sbjct: 603 GKLGH-----GDTSRVYRPKVISNLQ---GLLIRKVCCASQSSLALTSIGQVFVWGSGPC 654

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
             +   D   + VP R+   + +++  IAVG  H LAL  D  +++WGNN  GQ G G+ 
Sbjct: 655 LGYGQADATFL-VPKRLDEFQDLQIIDIAVGDNHCLALTCDNDVYSWGNNASGQCGLGNN 713

Query: 218 Q-PRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             P   P  V G     +  I+ G  HS A T
Sbjct: 714 NSPVLLPRKVTGFDNHVIYQISVGTSHSIAWT 745



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 40/172 (23%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           ++  ++ WG+N   QLG   ++P    IP                 H T    + E    
Sbjct: 403 KESHVYVWGSNSSYQLGI--SEPEKMLIP-----------------HLTPSFANSE---- 439

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNL---LAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
            +G +GRLG GD+   ++  P+ +        +++V       H++A+  DG I+S+G G
Sbjct: 440 -QGNYGRLGLGDSSNQNR--PKLIRFEHECKIKNLVSSKGSDGHTLAIASDGRIYSWGDG 496

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           D+G+LG+G  VT   P      I  P           + + +A G RH+ AI
Sbjct: 497 DYGKLGHGNHVTQKSPKL----ILGPMQGK-------VVRQIAVGYRHSAAI 537


>gi|159040146|ref|YP_001539399.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157918981|gb|ABW00409.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 555

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 146/355 (41%), Gaps = 35/355 (9%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +++ WG  + GQLG G   +      V       + ++     NS A+            
Sbjct: 55  TVLTWGENDFGQLGDGTTIDSSTPVDVDLPAGTTITAIAGSDANSFALTSTGAVLAWGNN 114

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG       P  V   + T +   A+G +H LA+   G   AWGGN +G+ G+ 
Sbjct: 115 TGGELGDGTNTDRTTPVAVKLPTGTTVTAIAVGTFHTLALTSTGALLAWGGNGFGELGD- 173

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G    R+  +P        +  +A G  HS+ LT  G V  WG+        G
Sbjct: 174 -------GTTTARNEPVPVNVPAGTTITAIAGGRGHSLALTSTGTVLAWGKNNEGQLGDG 226

Query: 166 DIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                + PV V       V  IA G  ++ AL   G + AWG N  GQ+G G T  RS P
Sbjct: 227 TNANSTTPVDVDLPPGTTVTAIAGGGSNSFALTSAGTVLAWGLNSSGQVGDGTTTDRSTP 286

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V    G T+  IA G  HS ALT  G V  WG    G+LG      +    P  VNL 
Sbjct: 287 VDVDLPPGTTVTAIAGGEGHSVALTSAGTVLAWGLNSSGQLGD--GTTTDSTTPVDVNLP 344

Query: 284 AGEDIVQVSC-GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
               I  ++   G+HS+ALT  G I ++G    G LG G       P++V  N+P
Sbjct: 345 PDTTITAITAHDGSHSLALTSTGTILAWGLNSSGELGDGTTTNRSTPVDV--NLP 397



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 140/325 (43%), Gaps = 33/325 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + ST +++AWG+   G+LG G N +R     VK      V ++  G+ ++LA+       
Sbjct: 102 LTSTGAVLAWGNNTGGELGDGTNTDRTTPVAVKLPTGTTVTAIAVGTFHTLALTSTGALL 161

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   N P  VN  + T I   A G  H LA+   G   AWG N  G
Sbjct: 162 AWGGNGFGELGDGTTTARNEPVPVNVPAGTTITAIAGGRGHSLALTSTGTVLAWGKNNEG 221

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+       T      D+ +P    P   V  +A GG++S  LT  G V  WG     
Sbjct: 222 QLGDGTNANSTT----PVDVDLP----PGTTVTAIAGGGSNSFALTSAGTVLAWGLNSSG 273

Query: 164 ---PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               G     S PV V       V  IA G  H++AL   G + AWG N  GQLG G T 
Sbjct: 274 QVGDGTTTDRSTPVDVDLPPGTTVTAIAGGEGHSVALTSAGTVLAWGLNSSGQLGDGTTT 333

Query: 219 PRSQPIPVQGLSGLTLVDIAA-GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             + P+ V      T+  I A  G HS ALT  G +  WG    G L  GD   +++  P
Sbjct: 334 DSTTPVDVNLPPDTTITAITAHDGSHSLALTSTGTILAWGLNSSGEL--GDGTTTNRSTP 391

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALT 302
             VNL  G  +  +  G  HS+ALT
Sbjct: 392 VDVNLPPGTTVTAIDNGDDHSMALT 416



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 16/171 (9%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +  WG N++GQLG G T   S P+ V   +G T+  IA    +S ALT  G V  WG   
Sbjct: 56  VLTWGENDFGQLGDGTTIDSSTPVDVDLPAGTTITAIAGSDANSFALTSTGAVLAWGNNT 115

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G LG G N  + +  P  V L  G  +  ++ G  H++ALT  G + ++G    G LG 
Sbjct: 116 GGELGDGTN--TDRTTPVAVKLPTGTTVTAIAVGTFHTLALTSTGALLAWGGNGFGELGD 173

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR-HTLAIVEWQT 370
           G      +P  VP+N+PA      G     IA     GGR H+LA+    T
Sbjct: 174 GTTTARNEP--VPVNVPA------GTTITAIA-----GGRGHSLALTSTGT 211


>gi|8131932|gb|AAF73142.1|AF148799_1 retinitis pigmentosa GTP-ase regulator RPGR [Canis lupus
           familiaris]
          Length = 416

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 154/315 (48%), Gaps = 26/315 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G     +  T
Sbjct: 70  GSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLGLGDTEERST 129

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             ++       QR      ++Q++AG   S  LT +G ++ WG          ++  + V
Sbjct: 130 FHLI--SFFTSQR-----KIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENVTNVCV 182

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ--PRSQPIPVQGLS 230
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG  +        P PV G+ 
Sbjct: 183 PQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPVPGIP 242

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +  + I  
Sbjct: 243 G-KVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETS-VPKAIEHIKDQKISF 299

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++CG  H+  +T  G +++FG G HG+LG G + +T Q +        P    + +  R+
Sbjct: 300 IACGENHTALITDMGLMYTFGDGRHGKLGLGLENSTNQFI--------PTLCSNFL--RF 349

Query: 351 IAKLVACGGRHTLAI 365
           I +LV+CGG HTL  
Sbjct: 350 IVQLVSCGGCHTLVF 364



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ V+T    ++      WGQ    G    +S P  V+ L  E+VK  A G  H
Sbjct: 40  LSCGDEHTAVVTGNNKLYMFGSNNWGQ-LGLGSKSTVSKPTCVKALKPEKVKFAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT+ RS    +    S   +  ++AG   S ALT+D
Sbjct: 99  TLVSTEGGKVYAAGGNNEGQLGLGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    + ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 159 GELFMWGDNSEGQIGL--ENVTNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGQLYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   ++     M  P+    P   G  V        VACGG HT+ + E
Sbjct: 215 GEPECGKLGLPNQLLVNHRMPQPV----PGIPGKVVQ-------VACGGGHTVVLTE 260


>gi|444516741|gb|ELV11274.1| E3 ubiquitin-protein ligase HERC2 [Tupaia chinensis]
          Length = 894

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 166/352 (47%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  IV+ A    G H LA+  
Sbjct: 496 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAA 555

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 556 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 600

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 601 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 660

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ ++G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 661 LAVTDNGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 720

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 721 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 778

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +     +VT  +P  +P           G+D + I   +ACG   + A
Sbjct: 779 NDQCQHFDTLRVTKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 818



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 485 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 524

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + IV+  A + G H + L   G V++WG             P  + K I
Sbjct: 525 LAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 584

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 585 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 644

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+TD+G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 645 GLKVIDVACGSGDAQTLAVTDNGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 702

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 703 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 751

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 752 KKVID-VAAGSTHCLALTE 769



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 553 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 612

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV D G+ ++W
Sbjct: 613 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTDNGQVWSW 672

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 673 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 724

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 725 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 784

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 785 FDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFA 818


>gi|328873771|gb|EGG22137.1| regulator of chromosome condensation domain-containing protein
           [Dictyostelium fasciculatum]
          Length = 1859

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 141/290 (48%), Gaps = 36/290 (12%)

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHS 146
           +D Q     WG +   + G + E ++ +     R  +  IP+ C+       ++ G  +S
Sbjct: 584 LDTQRGIMTWGSSSNCKLGFKTEGREQSQATPERLPNFNIPEICS-------ISCGSYYS 636

Query: 147 VVLTREGHVWTWGQ---PWPP------GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQE 197
             LT  G V+ WG+     PP      G ++   +P +V+ L +V L+++G +H+ AL+ 
Sbjct: 637 AALTENGDVYMWGRGSVKNPPLSTLGNGSLEDQLLPTKVESLSEVVLVSIGYYHSAALKS 696

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           +G L  WG  E GQLG GD   ++ P  VQ ++   +  +  G  H+  LT +G+V+ WG
Sbjct: 697 NGELLTWGCGEDGQLGHGDVLNQTIPKVVQTMTSHWVTQVQCGEKHTICLTKNGKVFTWG 756

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
             E+G+LG GD  K+    P  V  L   +I+Q++CG TH   LT    +  FG      
Sbjct: 757 TSEYGQLGLGDTQKNC--TPMLVTSLEKYNIIQIACGSTHCAVLTNAREVLVFGN----- 809

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              G  + +   + VP+ +PA ++    ++R      ++CG   T A+ E
Sbjct: 810 ---GAAMGSANIISVPMMVPALKHL--NIER------LSCGHYSTAALTE 848



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 130/310 (41%), Gaps = 65/310 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   ++ WG GEDGQLG                                     G   
Sbjct: 694 LKSNGELLTWGCGEDGQLG------------------------------------HGDVL 717

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            + IP  V  +++  + Q   G  H + +   G+ + WG +EYGQ G    +K+      
Sbjct: 718 NQTIPKVVQTMTSHWVTQVQCGEKHTICLTKNGKVFTWGTSEYGQLGLGDTQKN------ 771

Query: 121 RRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVP 173
                    C P L+       + Q+A G TH  VLT    V  +G     G    ISVP
Sbjct: 772 ---------CTPMLVTSLEKYNIIQIACGSTHCAVLTNAREVLVFGNGAAMGSANIISVP 822

Query: 174 VRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           + V  L+ + +  ++ G +   AL E G ++ WG+ +  +LG G  Q    P  V GL  
Sbjct: 823 MMVPALKHLNIERLSCGHYSTAALTECGDVYTWGSGQ--ELGHGTNQSELHPKLVDGLRS 880

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
            ++  I+ GG H   LTD G++Y  G+   G+LG    D++    P+K++ L     + V
Sbjct: 881 QSIRQISCGGRHMAFLTDSGKIYTCGKDPFGQLGHAQGDQNK---PKKIDSLLKTTFISV 937

Query: 292 SCGGTHSVAL 301
           SCG  H+ +L
Sbjct: 938 SCGENHNASL 947



 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 154/346 (44%), Gaps = 48/346 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR---SVVAGSRNSLAICDDGKT---- 59
           I+ WGS  + +LG       +     + L  + +    S+  GS  S A+ ++G      
Sbjct: 590 IMTWGSSSNCKLGFKTEGREQSQATPERLPNFNIPEICSISCGSYYSAALTENGDVYMWG 649

Query: 60  -----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            + + +P++V +LS  ++V  +IG +H  A+   G    WG  E
Sbjct: 650 RGSVKNPPLSTLGNGSLEDQLLPTKVESLS--EVVLVSIGYYHSAALKSNGELLTWGCGE 707

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP- 161
            GQ G         G +L + I    +      V QV  G  H++ LT+ G V+TWG   
Sbjct: 708 DGQLGH--------GDVLNQTIPKVVQTMTSHWVTQVQCGEKHTICLTKNGKVFTWGTSE 759

Query: 162 ---WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 GD ++   P+ V  LE+  +I  A G+ H   L     +  +GN        G 
Sbjct: 760 YGQLGLGDTQKNCTPMLVTSLEKYNIIQIACGSTHCAVLTNAREVLVFGNGA----AMGS 815

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
               S P+ V  L  L +  ++ G + + ALT+ G+VY WG G+   LG G N   S++ 
Sbjct: 816 ANIISVPMMVPALKHLNIERLSCGHYSTAALTECGDVYTWGSGQE--LGHGTN--QSELH 871

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           P+ V+ L  + I Q+SCGG H   LT  G I++ G+   G+LG+ +
Sbjct: 872 PKLVDGLRSQSIRQISCGGRHMAFLTDSGKIYTCGKDPFGQLGHAQ 917


>gi|312199638|ref|YP_004019699.1| chromosome condensation regulator RCC1 [Frankia sp. EuI1c]
 gi|311230974|gb|ADP83829.1| regulator of chromosome condensation RCC1 [Frankia sp. EuI1c]
          Length = 372

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 152/346 (43%), Gaps = 41/346 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------------ 54
           ++ WG+   GQLG G    R  +  V+ L   ++ +V AG     A+             
Sbjct: 28  VLDWGANGQGQLGDGTTTGR--LTPVQVLGIDELTAVAAGEGTGYAMAYGAVQAWGDNSH 85

Query: 55  ---DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T     P QVN L    +V    G  +  AV   G A+AWG N  G  G+   
Sbjct: 86  NELGDGTTTDRLTPVQVNDL--VDVVAIGAGAHNGYAVRSDGTAWAWGENSDGSVGD--- 140

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR-EGHVWTWGQ----PWPPGD 166
                G  + R +  P + A    V  VA GG H+    R +G  W WG+        G 
Sbjct: 141 -----GTTVNRSL--PVQVAGLTDVTAVA-GGMHTGYAVRSDGTAWAWGENNAGQLGDGT 192

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
                 PV+V GL QV  IA G +   AL+ DG +WAWG+N +G LG G T     P+PV
Sbjct: 193 TTDSPTPVQVSGLTQVNAIAGGVYRGYALRSDGTVWAWGSNSFGALGDGTTTDSLTPVPV 252

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL+ +T   IAAG     AL  DG V+ WG    G+LG G    SS   P +V+ L   
Sbjct: 253 AGLTQITA--IAAGSNSGYALRSDGTVWAWGYNYEGQLGNGTTTDSST--PVQVSGL--T 306

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
               ++ G     AL RDG + ++G G  G LG G       P +V
Sbjct: 307 RATAIAAGAYTGYALRRDGTVRAWGSGAGGALGNGTTTNRSTPAQV 352



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 138/317 (43%), Gaps = 42/317 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG     +LG G   +R  +  V+  +   V ++ AG+ N  A+            
Sbjct: 76  AVQAWGDNSHNELGDGTTTDR--LTPVQVNDLVDVVAIGAGAHNGYAVRSDGTAWAWGEN 133

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGE 108
                 DG T   ++P QV  L++   V A  GG H   AV   G A+AWG N  GQ G+
Sbjct: 134 SDGSVGDGTTVNRSLPVQVAGLTD---VTAVAGGMHTGYAVRSDGTAWAWGENNAGQLGD 190

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T          P + +    V  +A G      L  +G VW WG         
Sbjct: 191 GTTTDSPT----------PVQVSGLTQVNAIAGGVYRGYALRSDGTVWAWGSNSFGALGD 240

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G       PV V GL Q+  IA G+    AL+ DG +WAWG N  GQLG G T   S P+
Sbjct: 241 GTTTDSLTPVPVAGLTQITAIAAGSNSGYALRSDGTVWAWGYNYEGQLGNGTTTDSSTPV 300

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL+  T   IAAG +   AL  DG V  WG G  G LG G    +++  P +V  L+
Sbjct: 301 QVSGLTRATA--IAAGAYTGYALRRDGTVRAWGSGAGGALGNG--TTTNRSTPAQVTGLS 356

Query: 285 GEDIVQVSCGGTHSVAL 301
           G  I  ++ GG    A+
Sbjct: 357 G--ITTIAGGGLSGYAV 371



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 7/154 (4%)

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           L  V +I +      A    G +  WG N  GQLG G T  R  P+ V G+  LT V   
Sbjct: 6   LAAVGVIVLSTAPTAAATGPGFVLDWGANGQGQLGDGTTTGRLTPVQVLGIDELTAVAAG 65

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            G  ++ A    G V  WG   H  L  GD   + ++ P +VN L   D+V +  G  + 
Sbjct: 66  EGTGYAMAY---GAVQAWGDNSHNEL--GDGTTTDRLTPVQVNDLV--DVVAIGAGAHNG 118

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            A+  DG  +++G    G +G G  V    P++V
Sbjct: 119 YAVRSDGTAWAWGENSDGSVGDGTTVNRSLPVQV 152


>gi|408500676|ref|YP_006864595.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465500|gb|AFU71029.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1193

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 169/396 (42%), Gaps = 77/396 (19%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKAL---------EPYKVRSVVAGSRNSLAICDDG-- 57
            AWGS   G+LG G   +R    +VK           E +    V AG   SLA+  DG  
Sbjct: 698  AWGSNSYGRLGDGTATQRTTPVLVKKPDRKTYPDLPEDFTYMQVSAGDYYSLAVGSDGYV 757

Query: 58   --------------KTKTENIPSQV-------NALSNTKIVQAAIGGWHCLAVDDQGRAY 96
                           T +  +P +V       +A    K +Q + G +H LA+   G AY
Sbjct: 758  YAWGYNSYGQLGNNSTSSSYVPVRVRDPASPNDASKGLKAIQVSAGDYHSLALGSDGYAY 817

Query: 97   AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
            AWG   YG+ G    R      +  RD   P   +  L   QV+AG  HS+ +  +G+ +
Sbjct: 818  AWGDGSYGKLGNN-SRSSSYVPVRVRDPDSPNDASKGLKATQVSAGQNHSLAVGSDGYAY 876

Query: 157  TWGQPWPPGDIKQI--------SVPVRV----------QGLEQVKLIAVGAFHNLALQED 198
             WG     G   ++        SVPVRV          +GL+  + I+ G  H+LA+  D
Sbjct: 877  AWGD----GSYGKLGNYSTSSSSVPVRVRDPASPTDTSKGLKAAQ-ISAGYGHSLAVGSD 931

Query: 199  GALWAWG-NNEYGQLGTGDTQPRSQPI-------PVQGLSGLTLVDIAAGGWHSTALTDD 250
            G  +AWG N+ Y QLG   +   S P+       P     GL    ++AG  HS A+  D
Sbjct: 932  GYAYAWGLNDYYHQLGNNSSSNSSVPVRVRDPDSPSDASKGLKATQVSAGQEHSLAVDKD 991

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED----------IVQVSCGGTHSVA 300
            G  Y WG  ++G+LG      S +  P  + +L+              VQ++ G  HS+A
Sbjct: 992  GNAYAWGDNDNGQLGI---KGSGRPYPYPMKVLSSAQSTSAAGPWMRAVQITAGDHHSLA 1048

Query: 301  LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            +  DG+  ++G    GRLG G   T   P+ V  N+
Sbjct: 1049 IGTDGNTKAWGSNRDGRLGDGTTNTKWAPVPVAFNL 1084



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 38/310 (12%)

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR-DIVIPQRCAPKLIVRQVAAGGT 144
            LAV   G AYAWG N YG+ G+    +  T  ++++ D              QV+AG  
Sbjct: 687 SLAVGSDGNAYAWGSNSYGRLGDGTATQRTTPVLVKKPDRKTYPDLPEDFTYMQVSAGDY 746

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV----------QGLEQVKLIAVGAF 190
           +S+ +  +G+V+ WG                VPVRV          +GL+ ++ ++ G +
Sbjct: 747 YSLAVGSDGYVYAWGYNSYGQLGNNSTSSSYVPVRVRDPASPNDASKGLKAIQ-VSAGDY 805

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI-------PVQGLSGLTLVDIAAGGWH 243
           H+LAL  DG  +AWG+  YG+LG         P+       P     GL    ++AG  H
Sbjct: 806 HSLALGSDGYAYAWGDGSYGKLGNNSRSSSYVPVRVRDPDSPNDASKGLKATQVSAGQNH 865

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-------NLLAGEDIVQVSCGGT 296
           S A+  DG  Y WG G +G+L  G+   SS  VP +V       +   G    Q+S G  
Sbjct: 866 SLAVGSDGYAYAWGDGSYGKL--GNYSTSSSSVPVRVRDPASPTDTSKGLKAAQISAGYG 923

Query: 297 HSVALTRDGHIFSFGRGD-HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           HS+A+  DG+ +++G  D + +LG      +  P+ V  +  +P +A  G+     A  V
Sbjct: 924 HSLAVGSDGYAYAWGLNDYYHQLGNNSSSNSSVPVRV-RDPDSPSDASKGLK----ATQV 978

Query: 356 ACGGRHTLAI 365
           + G  H+LA+
Sbjct: 979 SAGQEHSLAV 988


>gi|350593458|ref|XP_003483691.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like, partial [Sus
           scrofa]
          Length = 969

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 164/346 (47%), Gaps = 56/346 (16%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +  +G+  T+        P  V  L++  I++ A    G H LA+  
Sbjct: 650 VTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIIKIAAHSDGHHYLALAA 709

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PK+I           V  +A
Sbjct: 710 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKVISAFSGKQAGKHVVHIA 754

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 755 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 814

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  ++ L  L +V +  G   S ALT DG+
Sbjct: 815 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQ 874

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 875 VYSWGKGDNQRLGHGTEEHV--RYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 932

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            D  +     +VT  +P  +P           G+D + I   +ACG
Sbjct: 933 NDQCQHFDTLRVTKPEPSALP-----------GLDTKHIVG-IACG 966



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 150/319 (47%), Gaps = 50/319 (15%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L+N  + Q A      L +   GR Y    N                     D 
Sbjct: 639 PIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNS--------------------DT 678

Query: 125 VIPQRC---APKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQI 170
           + PQ     A + I++  A + G H + L   G V++WG             P  + K I
Sbjct: 679 LAPQLVQGLASRNIIKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVI 738

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           S     Q  + V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL 
Sbjct: 739 SAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLK 798

Query: 231 GLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           GL ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ +  L   D+
Sbjct: 799 GLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLIEKLQDLDV 856

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+V CG   S+ALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  
Sbjct: 857 VKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQG 905

Query: 349 RWIAKLVACGGRHTLAIVE 367
           + +   VA G  H LA+ E
Sbjct: 906 KKVID-VAAGSTHCLALTE 923



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 120/268 (44%), Gaps = 36/268 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   V+ A    +    V  +  GS  S AI  +
Sbjct: 707 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAE 766

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 767 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 826

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   S+ LT++G V++W
Sbjct: 827 GDGDYGKLGRGGSDGCKTPKLIEK--------LQDLDVVKVRCGSQFSIALTKDGQVYSW 878

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 879 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 938

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
                  + +P  + GL    +V IA G
Sbjct: 939 FDTLRVTKPEPSALPGLDTKHIVGIACG 966


>gi|190610056|gb|ACE79739.1| At5g60870 [Arabidopsis thaliana]
          Length = 376

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 145/293 (49%), Gaps = 31/293 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G+  +  +P+         I   A+GG H +A+  QG  + WG   +G  G         
Sbjct: 66  GQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGH-------- 117

Query: 117 GRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ----- 169
            ++  R++V P+R        +  +A  GTH+  +T  G ++ WG+    GD +      
Sbjct: 118 -KVYTRELV-PRRVDDSWDCKISAIATSGTHTAAITESGELYMWGRE--EGDGRLGLGPG 173

Query: 170 --------ISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                   +SVP +V+ L   V  ++ G F  +AL ++G LW WG N   +LG GD    
Sbjct: 174 RGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGG 233

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +P+PV  L G+ +  IA GG+HS ALT++G+V  WG G HG+L  G +   ++ VP ++
Sbjct: 234 WEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQL--GSSSLRNQKVPTEI 291

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEV 332
             LA + IV ++ GG+ S A+T  G ++ +G     +LG  G       P+EV
Sbjct: 292 EALADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEV 344



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 149/324 (45%), Gaps = 39/324 (12%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------- 61
           WG G+ G+LG G         +    E + +R +  G  +S+A+   G   T        
Sbjct: 55  WGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGA 114

Query: 62  --------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG---GNEYGQCGEEP 110
                   E +P +V+   + KI   A  G H  A+ + G  Y WG   G+     G   
Sbjct: 115 LGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGR 174

Query: 111 ERKDDTGRILRRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPG 165
              +  G      + +P +  A  + V  V+ GG  ++ LT+EG +W WG         G
Sbjct: 175 GPNEGGG------LSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRG 228

Query: 166 DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           D      P+ V  LE V++  IA G +H+LAL E+G + +WG+  +GQLG+   + +  P
Sbjct: 229 DNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVP 288

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             ++ L+   +V IA+GG  S A+TD GE++ WG  +  +LG        +  P +VN L
Sbjct: 289 TEIEALADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQLGV-PGLPEIQTTPVEVNFL 347

Query: 284 AGED------IVQVSCGGTHSVAL 301
             ED      ++ +S G +H++ L
Sbjct: 348 TEEDECQPHKVISISIGASHALCL 371



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 152/338 (44%), Gaps = 51/338 (15%)

Query: 50  SLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGE 108
           +L    D        P +++A S++  +  + G +H  L +D  G  + WG  + G+ G 
Sbjct: 8   NLLFRSDQSFSLAQTPGRIDADSSSFRIGISCGLFHSGLTID--GDLWIWGKGDGGRLGF 65

Query: 109 EPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
             E            + +P       +  +R +A GG HSV LT +G V+TWG     G 
Sbjct: 66  GQENS----------VFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY----GG 111

Query: 167 IKQIS--------VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNE-------Y 209
              +         VP RV      K+  IA    H  A+ E G L+ WG  E        
Sbjct: 112 FGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLG 171

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              G  +    S P  V+ L+ + +  ++ GG+ + ALT +G+++ WG   +  LG GDN
Sbjct: 172 PGRGPNEGGGLSVPSKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDN 230

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
               +  P  V  L G  I Q++CGG HS+ALT +G + S+G G HG+LG     ++ + 
Sbjct: 231 LGGWE--PMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGS----SSLRN 284

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +VP  I A        D++ +   +A GG  + AI +
Sbjct: 285 QKVPTEIEAL------ADKKIV--FIASGGSSSAAITD 314


>gi|406602412|emb|CCH46028.1| Regulator of chromosome condensation [Wickerhamomyces ciferrii]
          Length = 476

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 162/362 (44%), Gaps = 52/362 (14%)

Query: 45  AGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           +GS   L +    K K    P     L +  IV  A+GG H LA+DD+ + ++WGGN+ G
Sbjct: 55  SGSMCELGLGPAAKNKEVKRPRLNPYLKDKGIVDFAVGGMHTLALDDKNQVWSWGGNDSG 114

Query: 105 QCGEEPERKDDTGR--------ILRRDIVIPQRCAPKLI--------VRQVAAGGTHSVV 148
             G +  +  +  +              +      P L+        V Q+AA    S V
Sbjct: 115 VLGRDTSKVKEQLKDMDDAGSDDDEDGDLNEAESTPGLVEGLPKDLKVVQLAATDNLSAV 174

Query: 149 LTREGHVWTWGQPW-------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
           L   G V+ WG             DI + S PV++   +++  +A G  H L L   G +
Sbjct: 175 LLENGEVYAWGTFRCNEGILGFKNDITKQSTPVKIDEFKEITQLASGKDHILGLDTKGVV 234

Query: 202 WAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +AWGN +  QLG   ++  + + +  +      +V I++G +H  A+T DG+V  WG  +
Sbjct: 235 FAWGNGQQLQLGRRISERNKLKTLEPREFGLADVVYISSGEFHCFAITKDGKVLTWGLNQ 294

Query: 261 HGRLGFGD--NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +G+ G      D S   VP +V  LA + IVQ++ G  H++AL+ DG +++FGR D   +
Sbjct: 295 YGQCGVSSELEDGSLISVPTEVEDLADKKIVQIAAGEHHTLALSEDGSVYAFGRIDMFEI 354

Query: 319 GYGRK--------VTTGQPMEVPI-----NIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G  +K           G    VP+     N+P  RN             +A G  H+LAI
Sbjct: 355 GIAKKDLPESTFRDVHGNARSVPVPTKIPNLPKTRN-------------IAVGSHHSLAI 401

Query: 366 VE 367
            E
Sbjct: 402 TE 403



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 136/304 (44%), Gaps = 42/304 (13%)

Query: 60  KTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
           + E+ P  V  L  + K+VQ A        + + G  YAWG     +C E          
Sbjct: 145 EAESTPGLVEGLPKDLKVVQLAATDNLSAVLLENGEVYAWG---TFRCNE---------G 192

Query: 119 ILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-- 171
           IL     I ++  P  I     + Q+A+G  H + L  +G V+ WG        ++IS  
Sbjct: 193 ILGFKNDITKQSTPVKIDEFKEITQLASGKDHILGLDTKGVVFAWGNGQQLQLGRRISER 252

Query: 172 -----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG----DTQPRSQ 222
                +  R  GL  V  I+ G FH  A+ +DG +  WG N+YGQ G      D    S 
Sbjct: 253 NKLKTLEPREFGLADVVYISSGEFHCFAITKDGKVLTWGLNQYGQCGVSSELEDGSLISV 312

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG----------FGDNDKS 272
           P  V+ L+   +V IAAG  H+ AL++DG VY +GR +   +G          F D   +
Sbjct: 313 PTEVEDLADKKIVQIAAGEHHTLALSEDGSVYAFGRIDMFEIGIAKKDLPESTFRDVHGN 372

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ VP    +        ++ G  HS+A+T DG +F++G G+   +G G     G+ +E 
Sbjct: 373 ARSVPVPTKIPNLPKTRNIAVGSHHSLAITEDGVVFAWGFGETYAIGLG---PAGEDVET 429

Query: 333 PINI 336
           P  I
Sbjct: 430 PTRI 433



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 34/263 (12%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
           ++ P +++     +I Q A G  H L +D +G  +AWG  +  Q G     ++    +  
Sbjct: 203 QSTPVKIDEFK--EITQLASGKDHILGLDTKGVVFAWGNGQQLQLGRRISERNKLKTLEP 260

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQ---ISVP 173
           R+  +         V  +++G  H   +T++G V TWG     Q     +++    ISVP
Sbjct: 261 REFGLAD-------VVYISSGEFHCFAITKDGKVLTWGLNQYGQCGVSSELEDGSLISVP 313

Query: 174 VRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT------------QP 219
             V+ L   K+  IA G  H LAL EDG+++A+G  +  ++G                  
Sbjct: 314 TEVEDLADKKIVQIAAGEHHTLALSEDGSVYAFGRIDMFEIGIAKKDLPESTFRDVHGNA 373

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P+P +  +     +IA G  HS A+T+DG V+ WG GE   +G G   +  +  P +
Sbjct: 374 RSVPVPTKIPNLPKTRNIAVGSHHSLAITEDGVVFAWGFGETYAIGLGPAGEDVE-TPTR 432

Query: 280 VNLLAGE--DIVQVSCGGTHSVA 300
           +   A +  DI  +  GG  SV+
Sbjct: 433 IKNTATQDHDIQLIGAGGQFSVS 455



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 37/184 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-----VRSVVAGSRNSLAICDDGKTKT 61
           + AWG+G+  QLG   +E  +    +K LEP +     V  + +G  +  AI  DGK  T
Sbjct: 234 VFAWGNGQQLQLGRRISERNK----LKTLEPREFGLADVVYISSGEFHCFAITKDGKVLT 289

Query: 62  --------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                                ++P++V  L++ KIVQ A G  H LA+ + G  YA+G  
Sbjct: 290 WGLNQYGQCGVSSELEDGSLISVPTEVEDLADKKIVQIAAGEHHTLALSEDGSVYAFGRI 349

Query: 102 EYGQCGEEPERKDDTGRILR------RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           +  + G    +KD      R      R + +P +       R +A G  HS+ +T +G V
Sbjct: 350 DMFEIG--IAKKDLPESTFRDVHGNARSVPVPTKIPNLPKTRNIAVGSHHSLAITEDGVV 407

Query: 156 WTWG 159
           + WG
Sbjct: 408 FAWG 411


>gi|410957260|ref|XP_003985249.1| PREDICTED: LOW QUALITY PROTEIN: E3 ISG15--protein ligase HERC5
           [Felis catus]
          Length = 1143

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 116/209 (55%), Gaps = 12/209 (5%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPP-----GDIKQISVPVRVQGLEQVKL--IAVGAF 190
           Q+  G  HS+ L++ G ++ WGQ              I++P  V+ L  + L  I+ G  
Sbjct: 260 QITCGDYHSLALSKGGELFAWGQNLHGQLGIGSQFASIAIPQIVENLSGIPLVQISAGKA 319

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H++AL   G +++WG N++GQLG G T  +  P  ++ L    +  +A GG H+  LT D
Sbjct: 320 HSMALSMSGNIYSWGRNDFGQLGLGHTDGKDFPSLIEALDNQKVEFLACGGSHTALLTKD 379

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFS 309
           G V+ +G G+HG+L  G N   +++ P+ V  LAG  + Q++CG  H++A   D G +FS
Sbjct: 380 GLVFTFGAGKHGQL--GHNSTQNELRPRLVTELAGNRVTQIACGRQHTLAYVSDLGKVFS 437

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           FG G  G+LG G   T  Q + +P+ +P+
Sbjct: 438 FGSGKEGQLGNGG--THNQLIPLPMKLPS 464



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 17/184 (9%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGW 242
           I  G +H+LAL + G L+AWG N +GQLG G +Q  S  IP  V+ LSG+ LV I+AG  
Sbjct: 261 ITCGDYHSLALSKGGELFAWGQNLHGQLGIG-SQFASIAIPQIVENLSGIPLVQISAGKA 319

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           HS AL+  G +Y WGR + G+LG G  D   K  P  +  L  + +  ++CGG+H+  LT
Sbjct: 320 HSMALSMSGNIYSWGRNDFGQLGLGHTD--GKDFPSLIEALDNQKVEFLACGGSHTALLT 377

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
           +DG +F+FG G HG+LG+       +P  V         AG+ V +      +ACG +HT
Sbjct: 378 KDGLVFTFGAGKHGQLGHNSTQNELRPRLVT------ELAGNRVTQ------IACGRQHT 425

Query: 363 LAIV 366
           LA V
Sbjct: 426 LAYV 429



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 34/296 (11%)

Query: 11  GSG-EDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVN 69
           G+G E  QL  G++  R+  C+ K  +  K+ SV  G+   L +  DGK    N   +  
Sbjct: 189 GAGVEVHQLRAGSDGTRKPKCI-KLGKKAKIHSVDQGAEYMLILSSDGKPFEYNYSIEHA 247

Query: 70  ----ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
                L    I+Q   G +H LA+   G  +AWG N +GQ G   +            I 
Sbjct: 248 RFQCILQEKXIIQITCGDYHSLALSKGGELFAWGQNLHGQLGIGSQFA---------SIA 298

Query: 126 IPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV--------PVR 175
           IPQ       + + Q++AG  HS+ L+  G++++WG+     D  Q+ +        P  
Sbjct: 299 IPQIVENLSGIPLVQISAGKAHSMALSMSGNIYSWGR----NDFGQLGLGHTDGKDFPSL 354

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           ++ L  ++V+ +A G  H   L +DG ++ +G  ++GQLG   TQ   +P  V  L+G  
Sbjct: 355 IEALDNQKVEFLACGGSHTALLTKDGLVFTFGAGKHGQLGHNSTQNELRPRLVTELAGNR 414

Query: 234 LVDIAAGGWHSTALTDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           +  IA G  H+ A   D G+V+ +G G+ G+LG G     ++++P  + L + E++
Sbjct: 415 VTQIACGRQHTLAYVSDLGKVFSFGSGKEGQLGNGGT--HNQLIPLPMKLPSNEEL 468



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 13/129 (10%)

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           ++ I  G +HS AL+  GE++ WG+  HG+LG G +  +S  +PQ V  L+G  +VQ+S 
Sbjct: 258 IIQITCGDYHSLALSKGGELFAWGQNLHGQLGIG-SQFASIAIPQIVENLSGIPLVQISA 316

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  HS+AL+  G+I+S+GR D G+LG G   T G+  + P  I A  N           +
Sbjct: 317 GKAHSMALSMSGNIYSWGRNDFGQLGLGH--TDGK--DFPSLIEALDNQK--------VE 364

Query: 354 LVACGGRHT 362
            +ACGG HT
Sbjct: 365 FLACGGSHT 373



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  + GQLG+G+ + +++  +++AL+  KV  +  G  ++  +  DG   
Sbjct: 324 LSMSGNIYSWGRNDFGQLGLGHTDGKDFPSLIEALDNQKVEFLACGGSHTALLTKDGLVF 383

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G  H LA V D G+ +++G  + 
Sbjct: 384 TFGAGKHGQLGHNSTQNELRPRLVTELAGNRVTQIACGRQHTLAYVSDLGKVFSFGSGKE 443

Query: 104 GQCG 107
           GQ G
Sbjct: 444 GQLG 447



 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 105/267 (39%), Gaps = 42/267 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLGIG+      +  +V+ L    +  + AG  +S+A+   G        
Sbjct: 277 LFAWGQNLHGQLGIGSQFASIAIPQIVENLSGIPLVQISAGKAHSMALSMSGNIYSWGRN 336

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T  ++ PS + AL N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 337 DFGQLGLGHTDGKDFPSLIEALDNQKVEFLACGGSHTALLTKDGLVFTFGAGKHGQLGHN 396

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +   R++    +   R      V Q+A G  H++    + G V+++     GQ   
Sbjct: 397 STQNELRPRLVTE--LAGNR------VTQIACGRQHTLAYVSDLGKVFSFGSGKEGQLGN 448

Query: 164 PGDIKQ-ISVPVRVQGLEQVKLIAVGAFHNLALQEDG----ALWAWGNNEYGQLGTGDTQ 218
            G   Q I +P+++   E++   +  +   L +   G     LW    N Y  L      
Sbjct: 449 GGTHNQLIPLPMKLPSNEELTFESRASEKELIMIAGGNQSILLWMGKKNSYVNL------ 502

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHST 245
            R  P   +G     + D+    W +T
Sbjct: 503 RRKIPTLNEGTVKRWIADVGTKQWQNT 529



 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 32/45 (71%)

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           +L  + I+Q++CG  HS+AL++ G +F++G+  HG+LG G +  +
Sbjct: 252 ILQEKXIIQITCGDYHSLALSKGGELFAWGQNLHGQLGIGSQFAS 296


>gi|159037173|ref|YP_001536426.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916008|gb|ABV97435.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 569

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 124/273 (45%), Gaps = 17/273 (6%)

Query: 56  DGKTKT-ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
           DG T     +P  V     T++  AA G  H LAV   G   AWG N  GQ G+      
Sbjct: 77  DGTTNNYRTVPIPVGLPKGTEVTAAAGGDAHSLAVTSAGTVLAWGRNAVGQLGD------ 130

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
             G  + R   +  R  P   V  VAAG  HS+ LT  G V+ WG         G     
Sbjct: 131 --GTTINRSTPVDVRLPPGTTVTAVAAGFNHSLALTSAGTVFAWGDNSTGQLGDGTRTNR 188

Query: 171 SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           S PV V       +  +A G  H+LAL   G ++AWG+N  GQLG G    RS P+ V  
Sbjct: 189 STPVAVSFPSGTVITAVAAGGMHSLALTSAGTVFAWGDNSTGQLGDGTRTNRSTPVVVGL 248

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
             G  +  IA GG HS A+T  G    WG    G+LG G N      V   V L  G  +
Sbjct: 249 PVGTIVTAIAGGGSHSLAVTSAGNARAWGNNFVGQLGDGSNINRDASV--HVRLPPGTTV 306

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             V+ G THS+ALT  G + S+G  + G+LG G
Sbjct: 307 TAVAGGLTHSLALTSVGTVLSWGSNNWGQLGDG 339



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 145/353 (41%), Gaps = 35/353 (9%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCV-----------------VKALEPYKVRSVVAGSR 48
           +++AWG    GQLG G       V +                   +L      +V+A  R
Sbjct: 63  AVLAWGDNYYGQLGDGTTNNYRTVPIPVGLPKGTEVTAAAGGDAHSLAVTSAGTVLAWGR 122

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N++    DG T   + P  V     T +   A G  H LA+   G  +AWG N  GQ G+
Sbjct: 123 NAVGQLGDGTTINRSTPVDVRLPPGTTVTAVAAGFNHSLALTSAGTVFAWGDNSTGQLGD 182

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                   G    R   +        ++  VAAGG HS+ LT  G V+ WG         
Sbjct: 183 --------GTRTNRSTPVAVSFPSGTVITAVAAGGMHSLALTSAGTVFAWGDNSTGQLGD 234

Query: 165 GDIKQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           G     S PV V GL     V  IA G  H+LA+   G   AWGNN  GQLG G    R 
Sbjct: 235 GTRTNRSTPV-VVGLPVGTIVTAIAGGGSHSLAVTSAGNARAWGNNFVGQLGDGSNINRD 293

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
             + V+   G T+  +A G  HS ALT  G V  WG    G+LG  D     +  P  V+
Sbjct: 294 ASVHVRLPPGTTVTAVAGGLTHSLALTSVGTVLSWGSNNWGQLG--DGTARDRNTPGSVS 351

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           L  G  I  V+ G    +ALT  G + ++G    G+LG G       P+   +
Sbjct: 352 LPPGVTITAVAAGDLFGLALTSAGTVLAWGGNIVGQLGDGTTTVRRTPVAASL 404



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 142/323 (43%), Gaps = 32/323 (9%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  +++AWG    GQLG G    R     V+      V +V AG  +SLA+       
Sbjct: 111 VTSAGTVLAWGRNAVGQLGDGTTINRSTPVDVRLPPGTTVTAVAAGFNHSLALTSAGTVF 170

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG     + P  V+  S T I   A GG H LA+   G  +AWG N  G
Sbjct: 171 AWGDNSTGQLGDGTRTNRSTPVAVSFPSGTVITAVAAGGMHSLALTSAGTVFAWGDNSTG 230

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-- 162
           Q G+       T  ++   +          IV  +A GG+HS+ +T  G+   WG  +  
Sbjct: 231 QLGDGTRTNRSTPVVVGLPV--------GTIVTAIAGGGSHSLAVTSAGNARAWGNNFVG 282

Query: 163 PPGDIKQI----SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
             GD   I    SV VR+     V  +A G  H+LAL   G + +WG+N +GQLG G  +
Sbjct: 283 QLGDGSNINRDASVHVRLPPGTTVTAVAGGLTHSLALTSVGTVLSWGSNNWGQLGDGTAR 342

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P  V    G+T+  +AAG     ALT  G V  WG    G+L  GD   + +  P 
Sbjct: 343 DRNTPGSVSLPPGVTITAVAAGDLFGLALTSAGTVLAWGGNIVGQL--GDGTTTVRRTPV 400

Query: 279 KVNLLAGEDIVQVSCGGTHSVAL 301
             +L     I  ++ G  HS+AL
Sbjct: 401 AASLPTATTITAIATGSGHSLAL 423



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 14/202 (6%)

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           + + + +PV +    +V   A G  H+LA+   G + AWG N  GQLG G T  RS P+ 
Sbjct: 82  NYRTVPIPVGLPKGTEVTAAAGGDAHSLAVTSAGTVLAWGRNAVGQLGDGTTINRSTPVD 141

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V+   G T+  +AAG  HS ALT  G V+ WG    G+LG  D  ++++  P  V+  +G
Sbjct: 142 VRLPPGTTVTAVAAGFNHSLALTSAGTVFAWGDNSTGQLG--DGTRTNRSTPVAVSFPSG 199

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             I  V+ GG HS+ALT  G +F++G    G+LG G +     P+ V            G
Sbjct: 200 TVITAVAAGGMHSLALTSAGTVFAWGDNSTGQLGDGTRTNRSTPVVV------------G 247

Query: 346 VDRRWIAKLVACGGRHTLAIVE 367
           +    I   +A GG H+LA+  
Sbjct: 248 LPVGTIVTAIAGGGSHSLAVTS 269


>gi|386724712|ref|YP_006191038.1| hypothetical protein B2K_21665 [Paenibacillus mucilaginosus K02]
 gi|384091837|gb|AFH63273.1| hypothetical protein B2K_21665 [Paenibacillus mucilaginosus K02]
          Length = 338

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 152/330 (46%), Gaps = 39/330 (11%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------------- 53
           AWG+  + QLG G   +R     VK L+   V  + AG   S A+               
Sbjct: 3   AWGANSNAQLGDGTKTDRYSPIPVKNLD--SVIGISAGGAASFAVRSDGTAWAWGSNLFG 60

Query: 54  -CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              DG T     P QV  L +   ++A  G  H LAV   G  +AWG N YGQ G+    
Sbjct: 61  QLGDGTTYDRLTPVQVQGLHSVVALEA--GSSHSLAVKADGSVWAWGWNTYGQLGDGTTD 118

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK 168
              T          P +      V  VAAG  HS+ +  +G VW WG  W      G   
Sbjct: 119 SRST----------PVQVEGLDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYT 168

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           + +VPV+V GL  V  ++ G   + AL+ DG +WAWG N+ GQLG+ +T   + P PVQ 
Sbjct: 169 ESTVPVQVTGLGSVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGS-ETAASNSPSPVQV 227

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
               +   I++G  +S AL +DG V+ WG    G+LG G    SS   P +V  L    +
Sbjct: 228 TGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSS--APVQVTRLG--SV 283

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           V V+ G  H +A+   G ++ +G   +G+L
Sbjct: 284 VSVAAGPLHGLAVQSGGTVWDWGNNTYGQL 313



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 144/290 (49%), Gaps = 25/290 (8%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NS A   DG       P  V  L +  ++  + GG    AV   G A+AWG N +GQ G+
Sbjct: 7   NSNAQLGDGTKTDRYSPIPVKNLDS--VIGISAGGAASFAVRSDGTAWAWGSNLFGQLGD 64

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                         D + P +      V  + AG +HS+ +  +G VW WG  W      
Sbjct: 65  GTTY----------DRLTPVQVQGLHSVVALEAGSSHSLAVKADGSVWAWG--WNTYGQL 112

Query: 165 --GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G     S PV+V+GL+ V  +A G+ H+LA++ DG++WAWG N  GQLG G     + 
Sbjct: 113 GDGTTDSRSTPVQVEGLDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTV 172

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V GL   ++V ++AG   S+AL  DG V+ WG  + G+LG   ++ ++   P  V +
Sbjct: 173 PVQVTGLG--SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLG---SETAASNSPSPVQV 227

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                   +S G  +S+AL  DG ++++G    G+LG G   ++  P++V
Sbjct: 228 TGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQV 277



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 118/228 (51%), Gaps = 20/228 (8%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           +AWG N   Q G+        G    R   IP +    +I   ++AGG  S  +  +G  
Sbjct: 2   WAWGANSNAQLGD--------GTKTDRYSPIPVKNLDSVI--GISAGGAASFAVRSDGTA 51

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
           W WG         G       PV+VQGL  V  +  G+ H+LA++ DG++WAWG N YGQ
Sbjct: 52  WAWGSNLFGQLGDGTTYDRLTPVQVQGLHSVVALEAGSSHSLAVKADGSVWAWGWNTYGQ 111

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG G T  RS P+ V+GL   ++V +AAG  HS A+  DG V+ WG    G+L  GD   
Sbjct: 112 LGDGTTDSRSTPVQVEGLD--SVVAVAAGSGHSLAVKADGSVWAWGANWSGQL--GDGTY 167

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           +   VP +V  L    +V VS G T S AL  DG ++++G  D G+LG
Sbjct: 168 TESTVPVQVTGLG--SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLG 213



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 100/227 (44%), Gaps = 33/227 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+ AWG    GQLG G  + R     V+ L+   V +V AGS +SLA+  DG        
Sbjct: 100 SVWAWGWNTYGQLGDGTTDSRSTPVQVEGLD--SVVAVAAGSGHSLAVKADGSVWAWGAN 157

Query: 59  --------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T TE+ +P QV  L +  +V  + G     A+   G  +AWG N+ GQ G E
Sbjct: 158 WSGQLGDGTYTESTVPVQVTGLGS--VVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSE 215

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
               +            P +         +++G  +S+ L  +G VW WG         G
Sbjct: 216 TAASNSPS---------PVQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNG 266

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                S PV+V  L  V  +A G  H LA+Q  G +W WGNN YGQL
Sbjct: 267 TTTSSSAPVQVTRLGSVVSVAAGPLHGLAVQSGGTVWDWGNNTYGQL 313



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 20/165 (12%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +WAWG N   QLG G    R  PIPV+ L   +++ I+AGG  S A+  DG  + WG   
Sbjct: 1   MWAWGANSNAQLGDGTKTDRYSPIPVKNLD--SVIGISAGGAASFAVRSDGTAWAWGSNL 58

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+L  GD     ++ P +V  L    +V +  G +HS+A+  DG ++++G   +G+LG 
Sbjct: 59  FGQL--GDGTTYDRLTPVQVQGL--HSVVALEAGSSHSLAVKADGSVWAWGWNTYGQLGD 114

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G   +   P++V           +G+D       VA G  H+LA+
Sbjct: 115 GTTDSRSTPVQV-----------EGLDS---VVAVAAGSGHSLAV 145


>gi|334329483|ref|XP_003341232.1| PREDICTED: x-linked retinitis pigmentosa GTPase regulator-like
           [Monodelphis domestica]
          Length = 1170

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 98/314 (31%), Positives = 157/314 (50%), Gaps = 28/314 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T N P+ V AL   K+  AA G  H L   ++G+ YA GGN  GQ G     +  T
Sbjct: 70  GSKTTVNKPTCVKALKPEKVKIAACGRNHTLVYTEEGKVYAAGGNSEGQLGLGDTEERTT 129

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-----KQIS 171
            +++            +  ++Q++AG   S  LT +G ++ WG     G I       + 
Sbjct: 130 FQLV-------SFFTAQHKIKQLSAGSNTSAALTEDGVLFMWGDN-SEGQIGLAEEANVC 181

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGL 229
           VP  V   + +  I+ G +H+  +  +G L+ +G  E G+LG    Q ++  IP  V G+
Sbjct: 182 VPSEVTIGKPISWISCGYYHSAFVTTEGELYTFGEPENGKLGLSPEQLKNHRIPQLVLGI 241

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            G  +  +A GG H+ ALT++ EVY +G G+ G+LG G     +   P+ V  L  + I 
Sbjct: 242 PG-KVNQVACGGGHTVALTEE-EVYTFGLGQFGQLGLGTFIFETSE-PKVVKHLQNQKIQ 298

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            ++CG  H+  ++  GH+++FG G HG+LG G++  T Q +        P    + +  +
Sbjct: 299 YIACGENHTALISDTGHMYTFGDGRHGKLGLGQENFTNQFV--------PTLCSNFL--K 348

Query: 350 WIAKLVACGGRHTL 363
           +I +LVACGG H L
Sbjct: 349 FIVRLVACGGCHML 362



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 21/281 (7%)

Query: 49  NSLAICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           +S A+   GK+K  ENIPS+   L N      + G  H   +    + Y +G N +GQ G
Sbjct: 10  DSGAVFTFGKSKFAENIPSKF-WLKNDIPAYLSCGDEHTALITGNSKLYMFGSNNWGQLG 68

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
              +   +    ++   + P++      V+  A G  H++V T EG V+  G        
Sbjct: 69  LGSKTTVNKPTCVK--ALKPEK------VKIAACGRNHTLVYTEEGKVYAAGGNSEGQLG 120

Query: 164 PGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++ +    V       ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERTTFQLVSFFTAQHKIKQLSAGSNTSAALTEDGVLFMWGDNSEGQIGLAEEA-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P +   G  +  I+ G +HS  +T +GE+Y +G  E+G+LG       +  +PQ V
Sbjct: 179 NVCVPSEVTIGKPISWISCGYYHSAFVTTEGELYTFGEPENGKLGLSPEQLKNHRIPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
             + G+ + QV+CGG H+VALT +  +++FG G  G+LG G
Sbjct: 239 LGIPGK-VNQVACGGGHTVALTEE-EVYTFGLGQFGQLGLG 277



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 100/400 (25%), Positives = 161/400 (40%), Gaps = 74/400 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +   + +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   ++GK  
Sbjct: 50  ITGNSKLYMFGSNNWGQLGLGSKTTVNKPTCVKALKPEKVKIAACGRNHTLVYTEEGKVY 109

Query: 61  TENIPSQVN-ALSNT----------------KIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                S+    L +T                KI Q + G     A+ + G  + WG N  
Sbjct: 110 AAGGNSEGQLGLGDTEERTTFQLVSFFTAQHKIKQLSAGSNTSAALTEDGVLFMWGDNSE 169

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-- 161
           GQ G   E           ++ +P        +  ++ G  HS  +T EG ++T+G+P  
Sbjct: 170 GQIGLAEEA----------NVCVPSEVTIGKPISWISCGYYHSAFVTTEGELYTFGEPEN 219

Query: 162 ----WPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 P  +K   +P  V G+  +V  +A G  H +AL E+  ++ +G  ++GQLG G 
Sbjct: 220 GKLGLSPEQLKNHRIPQLVLGIPGKVNQVACGGGHTVALTEE-EVYTFGLGQFGQLGLGT 278

Query: 217 -TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
                S+P  V+ L    +  IA G  H+  ++D G +Y +G G HG+LG G  + +++ 
Sbjct: 279 FIFETSEPKVVKHLQNQKIQYIACGENHTALISDTGHMYTFGDGRHGKLGLGQENFTNQF 338

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVA-----LTRDGHIFS-----------FGRGDHGRLG 319
           VP   +      +  V+CGG H +      L +   I                GD    G
Sbjct: 339 VPTLCSNFLKFIVRLVACGGCHMLVFAIPRLNKSEEIIEEKVNDTVLTVISSAGDEQSSG 398

Query: 320 ----------------------YGRKVTTGQPMEVPINIP 337
                                  GR + T  P+EVP   P
Sbjct: 399 NTLQRSLSARSRRRERENSPEQLGRMIRTLPPLEVPFKSP 438



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 32/241 (13%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    ++ P  V+ L  E+VK+ A G  H
Sbjct: 40  LSCGDEHTALITGNSKLYMFGSNNWGQ-LGLGSKTTVNKPTCVKALKPEKVKIAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT----LVDIAAGGWHSTAL 247
            L   E+G ++A G N  GQLG GDT+ R+     Q +S  T    +  ++AG   S AL
Sbjct: 99  TLVYTEEGKVYAAGGNSEGQLGLGDTEERTT---FQLVSFFTAQHKIKQLSAGSNTSAAL 155

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+DG ++ WG    G++G  +  +++  VP +V +  G+ I  +SCG  HS  +T +G +
Sbjct: 156 TEDGVLFMWGDNSEGQIGLAE--EANVCVPSEVTI--GKPISWISCGYYHSAFVTTEGEL 211

Query: 308 FSFGRGDHGRLGYG-RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++FG  ++G+LG    ++   +  ++ + IP   N             VACGG HT+A+ 
Sbjct: 212 YTFGEPENGKLGLSPEQLKNHRIPQLVLGIPGKVNQ------------VACGGGHTVALT 259

Query: 367 E 367
           E
Sbjct: 260 E 260


>gi|8131930|gb|AAF73141.1|AF148798_1 retinitis pigmentosa GTP-ase regulator RPGR [Canis lupus
           familiaris]
          Length = 683

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 154/315 (48%), Gaps = 26/315 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G     +  T
Sbjct: 70  GSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLGLGDTEERST 129

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             ++       QR      ++Q++AG   S  LT +G ++ WG          ++  + V
Sbjct: 130 FHLI--SFFTSQR-----KIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENVTNVCV 182

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ--PRSQPIPVQGLS 230
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG  +        P PV G+ 
Sbjct: 183 PQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPVPGIP 242

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +  + I  
Sbjct: 243 G-KVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETS-VPKAIEHIKDQKISF 299

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++CG  H+  +T  G +++FG G HG+LG G + +T Q +        P    + +  R+
Sbjct: 300 IACGENHTALITDMGLMYTFGDGRHGKLGLGLENSTNQFI--------PTLCSNFL--RF 349

Query: 351 IAKLVACGGRHTLAI 365
           I +LV+CGG HTL  
Sbjct: 350 IVQLVSCGGCHTLVF 364



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ V+T    ++      WGQ    G    +S P  V+ L  E+VK  A G  H
Sbjct: 40  LSCGDEHTAVVTGNNKLYMFGSNNWGQ-LGLGSKSTVSKPTCVKALKPEKVKFAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT+ RS    +    S   +  ++AG   S ALT+D
Sbjct: 99  TLVSTEGGKVYAAGGNNEGQLGLGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    + ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 159 GELFMWGDNSEGQIGL--ENVTNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGQLYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   ++     M  P+          G+  + +   VACGG HT+ + E
Sbjct: 215 GEPECGKLGLPNQLLVNHRMPQPV---------PGIPGKVVQ--VACGGGHTVVLTE 260



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 38/328 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKT+  ENIPS+     N      + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKTQFAENIPSKF-WFRNDVPTFLSCGDEHTAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  V    C   L    V+  A G  H++V T  G V+  G        
Sbjct: 69  --------LGSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLG 120

Query: 164 PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++ S    +       ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENV--T 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T +G++Y +G  E G+LG  +    +  +PQ V
Sbjct: 179 NVCVPQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             + G+ +VQV+CGG H+V LT    +++FG G  G+LG G  +              P+
Sbjct: 239 PGIPGK-VVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFL---------FETSVPK 287

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEW 368
                 D++     +ACG  HT  I + 
Sbjct: 288 AIEHIKDQK--ISFIACGENHTALITDM 313


>gi|403377072|gb|EJY88530.1| hypothetical protein OXYTRI_12294 [Oxytricha trifallax]
          Length = 709

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 47/317 (14%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P +V  L   K++  + GG H   V + G+ +  G N + + G E      TG    + 
Sbjct: 107 MPERVRGLPKLKVIFLSSGGKHSGLVTEDGKLWMCGSNLHDKLGLEG---ITTGS---KK 160

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDIKQ------ISVPVR 175
              P     ++ ++QVA G  H++ L++EG V+ WG       GD  Q         PV 
Sbjct: 161 TFKPVELLTQIFIKQVACGDYHTLALSKEGQVYVWGGSLHNKRGDRSQERKDNAKYKPVL 220

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           +Q    +++K I  G FH+LAL ++G L++WG  E G+ G G  + +  P  ++   G  
Sbjct: 221 LQSFAGKKIKQIDCGDFHSLALDDNGTLYSWGVGEKGECGHGKFEDQETPQRIKFFDGKI 280

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED------ 287
           +  I AG  H+ A+T D +VY WG G +G+ GFG+ + ++  +PQ VN  +  +      
Sbjct: 281 ITQIEAGNHHTLAITADNQVYAWGDGRYGQCGFGEFENTA--IPQLVNFPSQGNNTSYLD 338

Query: 288 ----------------IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR-------KV 324
                           I Q++ G  H++ LT  G IFSFG    G+LG+         K+
Sbjct: 339 DSVQQEILEFFKDPPKIKQIAAGEMHTLVLTSSGQIFSFGYNQQGQLGHNTVDNYCRPKL 398

Query: 325 TTGQPMEVPINIPAPRN 341
             G      + + A RN
Sbjct: 399 VEGMLNHKTVQVAAGRN 415



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 156/357 (43%), Gaps = 52/357 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           ++G    G+LG G+  E      V+ L   KV  + +G ++S  + +DGK          
Sbjct: 88  SFGQNTKGELGTGHYNEVLMPERVRGLPKLKVIFLSSGGKHSGLVTEDGKLWMCGSNLHD 147

Query: 59  --------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                   T ++     V  L+   I Q A G +H LA+  +G+ Y WGG+ + + G+  
Sbjct: 148 KLGLEGITTGSKKTFKPVELLTQIFIKQVACGDYHTLALSKEGQVYVWGGSLHNKRGDRS 207

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
           + + D  +      V+ Q  A K I +Q+  G  HS+ L   G +++WG         G 
Sbjct: 208 QERKDNAKY---KPVLLQSFAGKKI-KQIDCGDFHSLALDDNGTLYSWGVGEKGECGHGK 263

Query: 167 IKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP- 223
            +    P R++  +   +  I  G  H LA+  D  ++AWG+  YGQ G G+ +  + P 
Sbjct: 264 FEDQETPQRIKFFDGKIITQIEAGNHHTLAITADNQVYAWGDGRYGQCGFGEFENTAIPQ 323

Query: 224 ---IPVQGLSGLTLVD------------------IAAGGWHSTALTDDGEVYGWGRGEHG 262
               P QG +   L D                  IAAG  H+  LT  G+++ +G  + G
Sbjct: 324 LVNFPSQGNNTSYLDDSVQQEILEFFKDPPKIKQIAAGEMHTLVLTSSGQIFSFGYNQQG 383

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           +LG    D   +  P+ V  +     VQV+ G  HS+ LT    +++ G   +G+ G
Sbjct: 384 QLGHNTVDNYCR--PKLVEGMLNHKTVQVAAGRNHSLCLTNKNDVYACGNNQYGQCG 438



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 134/317 (42%), Gaps = 62/317 (19%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDG--------------------KTKTENIPSQVNAL 71
           V+ L    ++ V  G  ++LA+  +G                    K   +  P  + + 
Sbjct: 165 VELLTQIFIKQVACGDYHTLALSKEGQVYVWGGSLHNKRGDRSQERKDNAKYKPVLLQSF 224

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           +  KI Q   G +H LA+DD G  Y+WG  E G+CG         G+    D   PQR  
Sbjct: 225 AGKKIKQIDCGDFHSLALDDNGTLYSWGVGEKGECGH--------GKF--EDQETPQRIK 274

Query: 132 --PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP------------ 173
                I+ Q+ AG  H++ +T +  V+ WG         G+ +  ++P            
Sbjct: 275 FFDGKIITQIEAGNHHTLAITADNQVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNT 334

Query: 174 ------VRVQGLE------QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                 V+ + LE      ++K IA G  H L L   G ++++G N+ GQLG        
Sbjct: 335 SYLDDSVQQEILEFFKDPPKIKQIAAGEMHTLVLTSSGQIFSFGYNQQGQLGHNTVDNYC 394

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P  V+G+     V +AAG  HS  LT+  +VY  G  ++G+ G  D +   K     ++
Sbjct: 395 RPKLVEGMLNHKTVQVAAGRNHSLCLTNKNDVYACGNNQYGQCGLPDRE-MRKTFSHVLS 453

Query: 282 LLAGEDIVQVSCGGTHS 298
           LL+     ++  GG HS
Sbjct: 454 LLSVNSF-KLYAGGFHS 469



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 114/258 (44%), Gaps = 40/258 (15%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAI----------------CDDGKTKTENIPSQVNALSNT 74
           ++++    K++ +  G  +SLA+                C  GK + +  P ++      
Sbjct: 220 LLQSFAGKKIKQIDCGDFHSLALDDNGTLYSWGVGEKGECGHGKFEDQETPQRIKFFDGK 279

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-------------EEPERKDDTGRI-- 119
            I Q   G  H LA+    + YAWG   YGQCG               P + ++T  +  
Sbjct: 280 IITQIEAGNHHTLAITADNQVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNTSYLDD 339

Query: 120 -LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPV 174
            ++++I+   +  PK  ++Q+AAG  H++VLT  G ++++G           +     P 
Sbjct: 340 SVQQEILEFFKDPPK--IKQIAAGEMHTLVLTSSGQIFSFGYNQQGQLGHNTVDNYCRPK 397

Query: 175 RVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+G+   K + V A   H+L L     ++A GNN+YGQ G  D + R     V  L  +
Sbjct: 398 LVEGMLNHKTVQVAAGRNHSLCLTNKNDVYACGNNQYGQCGLPDREMRKTFSHVLSLLSV 457

Query: 233 TLVDIAAGGWHSTALTDD 250
               + AGG+HS  + D+
Sbjct: 458 NSFKLYAGGFHSWVVLDE 475



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +W++G N  G+LGTG       P  V+GL  L ++ +++GG HS  +T+DG+++  G   
Sbjct: 86  VWSFGQNTKGELGTGHYNEVLMPERVRGLPKLKVIFLSSGGKHSGLVTEDGKLWMCGSNL 145

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           H +LG       SK   + V LL    I QV+CG  H++AL+++G ++ +G   H + G 
Sbjct: 146 HDKLGLEGITTGSKKTFKPVELLTQIFIKQVACGDYHTLALSKEGQVYVWGGSLHNKRGD 205

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             +         P+ + +   AG  +      K + CG  H+LA+
Sbjct: 206 RSQERKDNAKYKPVLLQSF--AGKKI------KQIDCGDFHSLAL 242



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 50/192 (26%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNE------------------------EREWVCVVKALE 36
           + +   + AWG G  GQ G G  E                        ++E +   K  +
Sbjct: 294 ITADNQVYAWGDGRYGQCGFGEFENTAIPQLVNFPSQGNNTSYLDDSVQQEILEFFK--D 351

Query: 37  PYKVRSVVAGSRNSLAICDDGK--------------TKTENI--PSQVNALSNTKIVQAA 80
           P K++ + AG  ++L +   G+                 +N   P  V  + N K VQ A
Sbjct: 352 PPKIKQIAAGEMHTLVLTSSGQIFSFGYNQQGQLGHNTVDNYCRPKLVEGMLNHKTVQVA 411

Query: 81  IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA 140
            G  H L + ++   YA G N+YGQCG  P+R  +  +     + +    + KL      
Sbjct: 412 AGRNHSLCLTNKNDVYACGNNQYGQCG-LPDR--EMRKTFSHVLSLLSVNSFKLY----- 463

Query: 141 AGGTHSVVLTRE 152
           AGG HS V+  E
Sbjct: 464 AGGFHSWVVLDE 475


>gi|307178981|gb|EFN67497.1| Probable E3 ubiquitin-protein ligase HERC4 [Camponotus floridanus]
          Length = 1048

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 184/401 (45%), Gaps = 61/401 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           +  WGS   G+LG+G  E+        V   +  +V  +  G   ++ I +DG       
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFMPRQVDFAKANEVEQIACGENYTVTITNDGQVYSCGN 60

Query: 58  -----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                      + + + IP  ++A    KI   A G  H LAV++ G+ ++WG N  GQ 
Sbjct: 61  NDYGQLGHEKARKRLQLIPG-LDAFVFKKI---ACGSCHTLAVNEWGQLFSWGCNMKGQL 116

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--- 163
           G      D T R  R    + +     +IV Q+A G  HS+ LT +G +++WG       
Sbjct: 117 G--LNSVDCTERTPR----MVKALGTSVIV-QIACGIEHSIALTNDGELYSWGSNREGQL 169

Query: 164 ---PGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                 + +I  P R+  L  V    IA G +H + + + G ++AWG N +GQLG  DTQ
Sbjct: 170 GIGSHTVTEIK-PKRIITLAAVPIAFIACGGYHTVVISKSGVVFAWGRNTFGQLGLNDTQ 228

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R  P  ++ L    +   A G   S  LT DG V+  G G +G+LG G+    ++++P+
Sbjct: 229 QRIVPCQLRTLRNAKVCYAACGEEFSVFLTLDGGVFTCGAGMYGQLGHGNG--MNEILPR 286

Query: 279 KVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLG--YGRKVTTGQPMEVPIN 335
           +V  L G  + Q+SCG  H++AL    G ++++G G  G+LG    R  TT      P+ 
Sbjct: 287 QVMELMGSTVTQISCGKRHTLALVPSRGRVYAWGLGGAGQLGNRASRSATT------PLV 340

Query: 336 IPAPRNAGDGVDRRW----------IAKLVACGGRHTLAIV 366
           +  P ++  G   ++          + + +  GG H  A +
Sbjct: 341 VLGPWSSASGSSMKFDLYHSPQIDCVVRHIFSGGDHCFATI 381



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 14/116 (12%)

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           ++ WG   HG LG G  +  +  +P++V+     ++ Q++CG  ++V +T DG ++S G 
Sbjct: 1   MFCWGSTIHGELGLGGIEDENIFMPRQVDFAKANEVEQIACGENYTVTITNDGQVYSCGN 60

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            D+G+LG+ +     Q       IP       G+D  ++ K +ACG  HTLA+ EW
Sbjct: 61  NDYGQLGHEKARKRLQL------IP-------GLDA-FVFKKIACGSCHTLAVNEW 102


>gi|356539788|ref|XP_003538375.1| PREDICTED: uncharacterized protein LOC100794953 [Glycine max]
          Length = 1046

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 30/276 (10%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + + +   +   A+GG H   V  QG  + WG  ++G+ G++ +    + +I+   
Sbjct: 294 VPKLLESTAMLDVHNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDS- 352

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQ 177
                     L V+ VA G  H+  LT  G V+TWG      D+      +   +P R+ 
Sbjct: 353 -------LNGLHVKTVACGEYHTCALTDSGEVYTWGNDVCCADLLNEGRTRSQWIPQRLG 405

Query: 178 G-LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           G L+ + +  +A G +H   +   G L+ +G+  +G LG GD +  S P  V+ L+GL +
Sbjct: 406 GPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLNGLRV 465

Query: 235 VDIAAGGWHSTALTD-----------DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
              A G WH+ A+ +            G+++ WG G+ GRLG  DN   +K+VP +V  L
Sbjct: 466 RSAACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHVDN--GNKIVPTRVTQL 523

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
              D VQVSCG   +VALT  G +F+ G   +G+LG
Sbjct: 524 VDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLG 559



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 139/336 (41%), Gaps = 57/336 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  WG G+ G+LG   + +     +V +L    V++V  G  ++ A+ D           
Sbjct: 325 VFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKTVACGEYHTCALTDSGEVYTWGNDV 384

Query: 56  -------DGKTKTENIPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                  +G+T+++ IP ++   L    I   A G WH   V   GR + +G   +G  G
Sbjct: 385 CCADLLNEGRTRSQWIPQRLGGPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLG 444

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR-----------EGHVW 156
               R   + + +             L VR  A G  H+  +              G ++
Sbjct: 445 HGDLRSYSSPKEVES--------LNGLRVRSAACGSWHTAAIVEVMFDRFRYNSASGKLF 496

Query: 157 TWGQPWPPGDIKQIS--------VPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
           TWG     GD  ++         VP RV  L     + V  G    +AL   G ++A G+
Sbjct: 497 TWGD----GDEGRLGHVDNGNKIVPTRVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGS 552

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            +YGQLG  +   R + + V+G      V  I+ G +H   LT  G VY WGRGE G+LG
Sbjct: 553 AKYGQLG--NPHARDKVVIVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGEIGQLG 610

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            GD +   +  P  V  L    +  ++CG + + A+
Sbjct: 611 LGDTE--DRYTPCFVEALRDRQVNTITCGPSFTAAI 644



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 15/206 (7%)

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PG    +   +    +  V  IA+G  H   + + G ++ WG  ++G+LG       S P
Sbjct: 288 PGIYSLVPKLLESTAMLDVHNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSP 347

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NL 282
             V  L+GL +  +A G +H+ ALTD GEVY WG          +    S+ +PQ++   
Sbjct: 348 KIVDSLNGLHVKTVACGEYHTCALTDSGEVYTWGNDVCCADLLNEGRTRSQWIPQRLGGP 407

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV-PINIPAPRN 341
           L G  I  V+CG  H+  ++  G +F++G G  G LG+G   +   P EV  +N    R+
Sbjct: 408 LDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLNGLRVRS 467

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIVE 367
           A             ACG  HT AIVE
Sbjct: 468 A-------------ACGSWHTAAIVE 480



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 42/228 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           ++S   +  +G G  G LG G+         V++L   +VRS   GS ++ AI +     
Sbjct: 426 VSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLNGLRVRSAACGSWHTAAIVEVMFDR 485

Query: 56  ------DGKTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
                  GK  T                + +P++V  L +   VQ + G    +A+ + G
Sbjct: 486 FRYNSASGKLFTWGDGDEGRLGHVDNGNKIVPTRVTQLVDYDFVQVSCGRMLTVALTNMG 545

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + +A G  +YGQ G  P  +D         +VI +    +  V+ ++ G  H  VLT  G
Sbjct: 546 KVFAMGSAKYGQLG-NPHARD--------KVVIVEGQLKQEFVKVISTGSYHVAVLTSAG 596

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL 195
            V+TWG+        GD +    P  V+ L   QV  I  G     A+
Sbjct: 597 SVYTWGRGEIGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAI 644



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S  S+  WG GE GQLG+G+ E+R   C V+AL   +V ++  G   + AIC
Sbjct: 592 LTSAGSVYTWGRGEIGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAIC 645


>gi|356569687|ref|XP_003553028.1| PREDICTED: uncharacterized protein LOC100797223 [Glycine max]
          Length = 1043

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 132/277 (47%), Gaps = 32/277 (11%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + + +   +   A+GG H      QG  + WG  ++G+ G++ +    + +I+   
Sbjct: 294 VPKLLESTAMLDVHNIALGGKHAALATKQGEVFCWGHGKWGRLGQKIDMDISSPKIVDS- 352

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQ-- 181
                     L V+ VA G  H+  LT  G V+TWG      D+  I    R Q + Q  
Sbjct: 353 -------LNGLHVKNVACGEYHTCALTDSGEVYTWGNDVCCADL-LIEGRTRSQWIPQKL 404

Query: 182 --------VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
                   +  +A G +H   +   G L+ +G+  +G LG GD +  S P  V+ LSGL 
Sbjct: 405 GGSLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLR 464

Query: 234 LVDIAAGGWHSTALTD-----------DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           +   A G WH+ A+ +            G+++ WG G+ GRLG  DN   SK+VP +V  
Sbjct: 465 VRSAACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHVDN--GSKLVPTRVTQ 522

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           L   D VQVSCG   +VALT  G +F+ G   +G+LG
Sbjct: 523 LVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLG 559



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 143/337 (42%), Gaps = 57/337 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  WG G+ G+LG   + +     +V +L    V++V  G  ++ A+ D           
Sbjct: 325 VFCWGHGKWGRLGQKIDMDISSPKIVDSLNGLHVKNVACGEYHTCALTDSGEVYTWGNDV 384

Query: 56  -------DGKTKTENIPSQVN-ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                  +G+T+++ IP ++  +L    I   A G WH   V   GR + +G   +G  G
Sbjct: 385 CCADLLIEGRTRSQWIPQKLGGSLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLG 444

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL-----------TREGHVW 156
               R   + + +             L VR  A G  H+  +           +  G ++
Sbjct: 445 HGDLRSYSSPKEVES--------LSGLRVRSAACGSWHTAAIVEVMFDRFRYNSASGKLF 496

Query: 157 TWGQPWPPGDIKQIS--------VPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
           TWG     GD  ++         VP RV  L     + V  G    +AL   G ++A G+
Sbjct: 497 TWGD----GDEGRLGHVDNGSKLVPTRVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGS 552

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            +YGQLG  +   R + + V+G      V  I+ G +H   LT  G VY WGRGE+G+LG
Sbjct: 553 AKYGQLG--NPHARDKAVMVEGQLKQEFVKVISTGSYHVAVLTSGGSVYTWGRGENGQLG 610

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            GD +   +  P  V  L    +  ++CG + + A++
Sbjct: 611 LGDTE--DRYTPCFVEALRDRQVNTITCGPSFTAAIS 645



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 13/187 (6%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V  IA+G  H     + G ++ WG+ ++G+LG       S P  V  L+GL + ++A G 
Sbjct: 306 VHNIALGGKHAALATKQGEVFCWGHGKWGRLGQKIDMDISSPKIVDSLNGLHVKNVACGE 365

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NLLAGEDIVQVSCGGTHSVA 300
           +H+ ALTD GEVY WG          +    S+ +PQK+   L G  I  V+CG  H+  
Sbjct: 366 YHTCALTDSGEVYTWGNDVCCADLLIEGRTRSQWIPQKLGGSLDGISISSVACGEWHTAI 425

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           ++  G +F++G G  G LG+G   +   P EV         +  G+  R      ACG  
Sbjct: 426 VSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEV--------ESLSGLRVRS----AACGSW 473

Query: 361 HTLAIVE 367
           HT AIVE
Sbjct: 474 HTAAIVE 480



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 42/228 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------ 54
           ++S   +  +G G  G LG G+         V++L   +VRS   GS ++ AI       
Sbjct: 426 VSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLSGLRVRSAACGSWHTAAIVEVMFDR 485

Query: 55  ----------------DDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
                           D+G+       ++ +P++V  L +   VQ + G    +A+ + G
Sbjct: 486 FRYNSASGKLFTWGDGDEGRLGHVDNGSKLVPTRVTQLVDYDFVQVSCGRMLTVALTNMG 545

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + +A G  +YGQ G  P  +D          V+ +    +  V+ ++ G  H  VLT  G
Sbjct: 546 KVFAMGSAKYGQLG-NPHARDKA--------VMVEGQLKQEFVKVISTGSYHVAVLTSGG 596

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLAL 195
            V+TWG+        GD +    P  V+ L   QV  I  G     A+
Sbjct: 597 SVYTWGRGENGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAI 644



 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 12/93 (12%)

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           +VP+ +   A  D+  ++ GG H+   T+ G +F +G G  GRL        GQ +++ I
Sbjct: 293 LVPKLLESTAMLDVHNIALGGKHAALATKQGEVFCWGHGKWGRL--------GQKIDMDI 344

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           + P   ++ +G+      K VACG  HT A+ +
Sbjct: 345 SSPKIVDSLNGLH----VKNVACGEYHTCALTD 373


>gi|156361074|ref|XP_001625345.1| predicted protein [Nematostella vectensis]
 gi|156212175|gb|EDO33245.1| predicted protein [Nematostella vectensis]
          Length = 440

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 187/409 (45%), Gaps = 62/409 (15%)

Query: 8   IAWGSGEDGQLGIG-NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +  G G+ GQLG+G +  ER+   V   LE   +  V +G  +++A+  DGK  T     
Sbjct: 48  LTLGQGDVGQLGLGPDTLERKKPAVPIDLEGVPIVQVESGGMHTVALSKDGKVYTWGCND 107

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQ 105
                         E  P  V+   +  IV  + G  H  A+ DQG  YAWG   +  GQ
Sbjct: 108 DGALGRETTSEGEEEFQPGVVSMPDDVNIVMVSAGDSHTAALSDQGTVYAWGTYRDASGQ 167

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWP 163
            G +P+       + ++  VI    + ++I  ++A+G  H+  LT  G+++T G  +   
Sbjct: 168 IGLQPDG------VKKKPAVILTSESDRII--KIASGNDHTAALTTSGNLFTLGCAEQGQ 219

Query: 164 PGDIKQ-------------ISVPVRVQGLEQVKL--IAVGAFHNLALQEDGA-LWAWGNN 207
            G +K+             I  P  V+  + +K   +  G+F    + + G+ ++AWG N
Sbjct: 220 LGRVKECFSARGGRRGLAYILEPALVRSKKGLKFKDVFCGSFATFVVAKTGSDVYAWGLN 279

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTL------VDIAAGGWHSTALTDDGEVYGWGRGEH 261
            YGQLGTGD Q    P+ V+ LS L        + IA G  H+     +G+VY  GR ++
Sbjct: 280 NYGQLGTGDVQTWHFPVKVKSLSQLNKSEKDKHITIANGQHHTIVCDPNGKVYALGRADY 339

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           GRLG GD  K + + P  +  L  E I +V+CG   S A++  G ++S+G G   +LG G
Sbjct: 340 GRLGLGDGAKETAL-PAHITSLDNEVIEKVACGECVSFAVSDKGELYSWGMGSCLQLGNG 398

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370
                    E  +  PA     +          V+ GG+HT+ +   +T
Sbjct: 399 ND-------EDDVTTPAKVQGKNLNSETHRVLGVSAGGQHTVILAAERT 440



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 6/128 (4%)

Query: 197 EDGALWAWGNNEYGQLGTG-DTQPRSQP-IPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           E G     G  + GQLG G DT  R +P +P+  L G+ +V + +GG H+ AL+ DG+VY
Sbjct: 43  ESGQALTLGQGDVGQLGLGPDTLERKKPAVPID-LEGVPIVQVESGGMHTVALSKDGKVY 101

Query: 255 GWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG-- 311
            WG  + G LG    ++   +  P  V++    +IV VS G +H+ AL+  G ++++G  
Sbjct: 102 TWGCNDDGALGRETTSEGEEEFQPGVVSMPDDVNIVMVSAGDSHTAALSDQGTVYAWGTY 161

Query: 312 RGDHGRLG 319
           R   G++G
Sbjct: 162 RDASGQIG 169



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           T+  + G+    G+G+ G+LG G +    K     ++ L G  IVQV  GG H+VAL++D
Sbjct: 39  TSSLESGQALTLGQGDVGQLGLGPDTLERKKPAVPID-LEGVPIVQVESGGMHTVALSKD 97

Query: 305 GHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           G ++++G  D G L  GR+ T+ G+    P  +  P +            +V+ G  HT 
Sbjct: 98  GKVYTWGCNDDGAL--GRETTSEGEEEFQPGVVSMPDDVN--------IVMVSAGDSHTA 147

Query: 364 AIVEWQT 370
           A+ +  T
Sbjct: 148 ALSDQGT 154



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 38/177 (21%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS-----VVAGSRNSLAICD-DGK 58
           + + AWG    GQLG G+ +   +   VK+L             +A  ++   +CD +GK
Sbjct: 271 SDVYAWGLNNYGQLGTGDVQTWHFPVKVKSLSQLNKSEKDKHITIANGQHHTIVCDPNGK 330

Query: 59  -----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                             K   +P+ + +L N  I + A G     AV D+G  Y+WG  
Sbjct: 331 VYALGRADYGRLGLGDGAKETALPAHITSLDNEVIEKVACGECVSFAVSDKGELYSWG-- 388

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTRE 152
             G C +     D+       D+  P +   K +      V  V+AGG H+V+L  E
Sbjct: 389 -MGSCLQLGNGNDED------DVTTPAKVQGKNLNSETHRVLGVSAGGQHTVILAAE 438


>gi|431917308|gb|ELK16841.1| Putative E3 ubiquitin-protein ligase HERC2 [Pteropus alecto]
          Length = 883

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 162/352 (46%), Gaps = 56/352 (15%)

Query: 40  VRSVVAGSRNSLAICDDGKTKTENI------PSQVNALSNTKIVQAAI--GGWHCLAVDD 91
           V  +    +  L +   G+  T+        P  V  L +  IV+ A    G H LA+  
Sbjct: 454 VSQIACAEKRFLILSRSGRVYTQAYSSDALAPQLVQGLVSRNIVKIAAHSDGHHYLALAA 513

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVA 140
            G  Y+WG      CG       D GR+   D V  +   PKLI           V  +A
Sbjct: 514 TGEVYSWG------CG-------DGGRLGHGDTVPLEE--PKLISAFCGKQAGQRVVHIA 558

Query: 141 AGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFHN 192
            G T+S  +T EG ++TWG+        G  +  ++P+ V GL+ +K+I V    G    
Sbjct: 559 CGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQT 618

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LA+ E+G +W+WG+ +YG+LG G +     P  V+ L  L +V +  G   S ALT DG+
Sbjct: 619 LAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLVEKLQDLDVVKVRCGSQFSVALTKDGQ 678

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+G++ RLG G  +      P+ +  L G+ ++ V+ G TH +ALT D  + S+G 
Sbjct: 679 VYSWGKGDNQRLGHGTEEHVR--YPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGS 736

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            D  +       T  +P  +P           G+D + I   +ACG   + A
Sbjct: 737 NDQCQHFDTLHATKPEPAALP-----------GLDTKHIVG-IACGPAQSFA 776



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 150/316 (47%), Gaps = 44/316 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P Q   L++  + Q A      L +   GR Y      Y      P+             
Sbjct: 443 PIQCAGLASLGVSQIACAEKRFLILSRSGRVYT---QAYSSDALAPQ------------- 486

Query: 125 VIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVP 173
            + Q    + IV+  A + G H + L   G V++WG             P  + K IS  
Sbjct: 487 -LVQGLVSRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKLISAF 545

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
              Q  ++V  IA G+ ++ A+  +G L+ WG   YG+LG G ++  + P+ V GL GL 
Sbjct: 546 CGKQAGQRVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLK 605

Query: 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++D+A G     + A+T++G+V+ WG G++G+LG G +D      P+ V  L   D+V+V
Sbjct: 606 VIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCK--TPKLVEKLQDLDVVKV 663

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            CG   SVALT+DG ++S+G+GD+ RLG+G +     P  +           +G+  + +
Sbjct: 664 RCGSQFSVALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLL-----------EGLQGKKV 712

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H LA+ E
Sbjct: 713 ID-VAAGSTHCLALTE 727



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 36/274 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKAL----EPYKVRSVVAGSRNSLAICDD 56
           +A+T  + +WG G+ G+LG G+    E   ++ A        +V  +  GS  S AI  +
Sbjct: 511 LAATGEVYSWGCGDGGRLGHGDTVPLEEPKLISAFCGKQAGQRVVHIACGSTYSAAITAE 570

Query: 57  GKTKT----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAW 98
           G+  T                E IP  V  L   K++  A G      LAV + G+ ++W
Sbjct: 571 GELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSW 630

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G  +YG+ G        T +++ +           L V +V  G   SV LT++G V++W
Sbjct: 631 GDGDYGKLGRGGSDGCKTPKLVEK--------LQDLDVVKVRCGSQFSVALTKDGQVYSW 682

Query: 159 G----QPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           G    Q    G  + +  P  ++GL+  K+I  A G+ H LAL ED  + +WG+N+  Q 
Sbjct: 683 GKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQH 742

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
                  + +P  + GL    +V IA G   S A
Sbjct: 743 FDTLHATKPEPAALPGLDTKHIVGIACGPAQSFA 776


>gi|328701601|ref|XP_001942852.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1
           [Acyrthosiphon pisum]
          Length = 4257

 Score =  130 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 25/248 (10%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + WG N   Q  E      D  R++R   D            V+QV AG   + ++  +G
Sbjct: 345 FMWGSNSSNQHAEGATEVTDIPRLVRSLSD------------VQQVEAGQYCTFIIDTKG 392

Query: 154 HVWTWGQP----WPPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGN 206
            V   G+        G+     VP R+     ++QV        H+LAL + G +++WG+
Sbjct: 393 CVSACGKNSYGRLGLGNSSNQPVPKRININCKIKQVSSSKGCDGHSLALSDTGEVYSWGD 452

Query: 207 NEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            +YG+LG GD     +P  +QG   G  +  ++AG  HS A+T DG++Y WG G+HGRLG
Sbjct: 453 GDYGKLGHGDVATHKEPKLIQGPFIGKVIELVSAGYRHSAAVTSDGQLYTWGEGDHGRLG 512

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKV 324
            GD +   + +P  V  L+   +  V+CG TH++A +RDG+ ++SFG GD+G+LG+G  +
Sbjct: 513 HGDCN--PRFIPTLVKSLSDMPVGYVACGSTHTLACSRDGNTVWSFGSGDNGKLGHGNTI 570

Query: 325 TTGQPMEV 332
              +P ++
Sbjct: 571 RLYKPQKI 578



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 168/357 (47%), Gaps = 38/357 (10%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS----------------R 48
           + +  WGS    Q   G  E  +   +V++L    V+ V AG                 +
Sbjct: 342 SEVFMWGSNSSNQHAEGATEVTDIPRLVRSLS--DVQQVEAGQYCTFIIDTKGCVSACGK 399

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCG 107
           NS      G +  + +P ++N     K V ++ G   H LA+ D G  Y+WG  +YG+ G
Sbjct: 400 NSYGRLGLGNSSNQPVPKRININCKIKQVSSSKGCDGHSLALSDTGEVYSWGDGDYGKLG 459

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                     ++++   +         ++  V+AG  HS  +T +G ++TWG+       
Sbjct: 460 HGDVATHKEPKLIQGPFI-------GKVIELVSAGYRHSAAVTSDGQLYTWGEGDHGRLG 512

Query: 164 PGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPR 220
            GD     +P  V+ L    V  +A G+ H LA   DG  +W++G+ + G+LG G+T   
Sbjct: 513 HGDCNPRFIPTLVKSLSDMPVGYVACGSTHTLACSRDGNTVWSFGSGDNGKLGHGNTIRL 572

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +P  ++GL    +  +AAG   S ALT  GEV+ WG+G +  LG G ++  +   P  V
Sbjct: 573 YKPQKIEGLRHYKIKKVAAGIHFSVALTCTGEVFTWGQGSN--LGCGSSE-ITLFSPAVV 629

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT-TGQPMEVPINI 336
             L  + I+ +S G +H +ALTR+  ++++G    G+ G G   +   +P +V IN+
Sbjct: 630 EDLMQQMIIDISVGDSHCLALTRNCAVYAWGSNGKGQCGQGHSTSPVSRPSKV-INL 685



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 148/301 (49%), Gaps = 27/301 (8%)

Query: 37  PYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAY 96
           P  +  V     NS     +G T+  +IP  V +LS+ + V+A  G +    +D +G   
Sbjct: 338 PQPLSEVFMWGSNSSNQHAEGATEVTDIPRLVRSLSDVQQVEA--GQYCTFIIDTKGCVS 395

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHSVVLTREG 153
           A G N YG+ G                  +P+R      ++QV++      HS+ L+  G
Sbjct: 396 ACGKNSYGRLGLGNSSNQP----------VPKRININCKIKQVSSSKGCDGHSLALSDTG 445

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGN 206
            V++WG         GD+     P  +QG    + ++L++ G  H+ A+  DG L+ WG 
Sbjct: 446 EVYSWGDGDYGKLGHGDVATHKEPKLIQGPFIGKVIELVSAGYRHSAAVTSDGQLYTWGE 505

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLG 265
            ++G+LG GD  PR  P  V+ LS + +  +A G  H+ A + DG  V+ +G G++G+LG
Sbjct: 506 GDHGRLGHGDCNPRFIPTLVKSLSDMPVGYVACGSTHTLACSRDGNTVWSFGSGDNGKLG 565

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            G+  +  K  PQK+  L    I +V+ G   SVALT  G +F++G+G +  LG G    
Sbjct: 566 HGNTIRLYK--PQKIEGLRHYKIKKVAAGIHFSVALTCTGEVFTWGQGSN--LGCGSSEI 621

Query: 326 T 326
           T
Sbjct: 622 T 622



 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 24/225 (10%)

Query: 152  EGHVWTWGQPWPPGDIK-----QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGN 206
            + ++W  G+    GD        I  P+++Q  +  + I  G      L   G + + G 
Sbjct: 3393 DAYLWGNGRNGQLGDTAVGQCINIWSPIKIQNFKIAQRIVCGQNCTFVLTSQGTVLSCGE 3452

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA---AGGWHSTALTDDGEVYGWGRGEHGR 263
              YG+LG G +        +  L G  +  ++       HS ALT+ GEV+ WG G+ G+
Sbjct: 3453 GNYGRLGHGHSDSLPNLTMISALQGFVITQVSTSIGSDGHSLALTETGEVFSWGDGDFGK 3512

Query: 264  LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
            LG G+N++  K  P+ +  L    ++QV+CG  HS  L++DG ++ FG  +HG+LG G  
Sbjct: 3513 LGHGNNERQRK--PKLIESLYDVVVIQVACGHKHSAVLSQDGEVYVFGSAEHGKLGLGGH 3570

Query: 324  VTTGQPMEVPINIPAPRNAGDGVDRRWI-AKLVACGGRHTLAIVE 367
            +   +P ++             V + ++  K +ACG  HT+ I E
Sbjct: 3571 INKKRPTKI-------------VHKGFLNIKYIACGQNHTICIGE 3602



 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 128/277 (46%), Gaps = 44/277 (15%)

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-----------VW 156
           EE E      RI  +D+ +       L+++++ + G  SVV T               V+
Sbjct: 293 EEFENYKSRNRIPLQDVAL-------LLMKKLVSFGETSVVRTPLNQNSAELPQPLSEVF 345

Query: 157 TWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
            WG         G  +   +P  V+ L  V+ +  G +    +   G + A G N YG+L
Sbjct: 346 MWGSNSSNQHAEGATEVTDIPRLVRSLSDVQQVEAGQYCTFIIDTKGCVSACGKNSYGRL 405

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAG---GWHSTALTDDGEVYGWGRGEHGRLGFGD- 268
           G G++   +QP+P +      +  +++      HS AL+D GEVY WG G++G+LG GD 
Sbjct: 406 GLGNSS--NQPVPKRININCKIKQVSSSKGCDGHSLALSDTGEVYSWGDGDYGKLGHGDV 463

Query: 269 -NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
              K  K++        G+ I  VS G  HS A+T DG ++++G GDHGRLG+G      
Sbjct: 464 ATHKEPKLIQGP---FIGKVIELVSAGYRHSAAVTSDGQLYTWGEGDHGRLGHG----DC 516

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            P  +P  + +  +   G         VACG  HTLA
Sbjct: 517 NPRFIPTLVKSLSDMPVG--------YVACGSTHTLA 545



 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 95/363 (26%), Positives = 165/363 (45%), Gaps = 61/363 (16%)

Query: 10   WGSGEDGQLG---IGNNEEREWVCVVKALEPYKVRS------VVAG--------SRNSLA 52
            WG+G +GQLG   +G          +    P K+++      +V G        S+ ++ 
Sbjct: 3397 WGNGRNGQLGDTAVGQ--------CINIWSPIKIQNFKIAQRIVCGQNCTFVLTSQGTVL 3448

Query: 53   ICDDGK------TKTENIP--SQVNALSNTKIVQ--AAIGG-WHCLAVDDQGRAYAWGGN 101
             C +G         ++++P  + ++AL    I Q   +IG   H LA+ + G  ++WG  
Sbjct: 3449 SCGEGNYGRLGHGHSDSLPNLTMISALQGFVITQVSTSIGSDGHSLALTETGEVFSWGDG 3508

Query: 102  EYGQCGE---EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
            ++G+ G    E +RK      L   +VI           QVA G  HS VL+++G V+ +
Sbjct: 3509 DFGKLGHGNNERQRKPKLIESLYDVVVI-----------QVACGHKHSAVLSQDGEVYVF 3557

Query: 159  GQPWPP-----GDIKQISVPVRV--QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
            G          G I +   P ++  +G   +K IA G  H + + E+  +WA+G  E G+
Sbjct: 3558 GSAEHGKLGLGGHINK-KRPTKIVHKGFLNIKYIACGQNHTICIGEN-VVWAFGEGEGGK 3615

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            LG G  +    P  +  L+G  +     G   +  L++DGE+Y  G          D   
Sbjct: 3616 LGIGSKKDIYVPQEIITLNGKNIKKAYCGNGFTMFLSEDGELYSCG--SDNLQDATDVLY 3673

Query: 272  SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            + K++P+K+    G+ +  V+ G  H + LT  GH++++G    G LG+G  +   +PM 
Sbjct: 3674 TEKLIPEKIFEFQGQIVTDVATGPDHVLVLTARGHVWAWGNNCEGILGFGHDLPVQKPMI 3733

Query: 332  VPI 334
            + I
Sbjct: 3734 IQI 3736



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 125/247 (50%), Gaps = 19/247 (7%)

Query: 95   AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            AY WG    GQ G+        G+ +  +I  P +     I +++  G   + VLT +G 
Sbjct: 3394 AYLWGNGRNGQLGDTA-----VGQCI--NIWSPIKIQNFKIAQRIVCGQNCTFVLTSQGT 3446

Query: 155  VWTWGQP-------WPPGDIKQISVPVRVQG--LEQVKLIAVGAFHNLALQEDGALWAWG 205
            V + G+             +  +++   +QG  + QV        H+LAL E G +++WG
Sbjct: 3447 VLSCGEGNYGRLGHGHSDSLPNLTMISALQGFVITQVSTSIGSDGHSLALTETGEVFSWG 3506

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            + ++G+LG G+ + + +P  ++ L  + ++ +A G  HS  L+ DGEVY +G  EHG+LG
Sbjct: 3507 DGDFGKLGHGNNERQRKPKLIESLYDVVVIQVACGHKHSAVLSQDGEVYVFGSAEHGKLG 3566

Query: 266  FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             G +   +K  P K+      +I  ++CG  H++ +  +  +++FG G+ G+LG G K  
Sbjct: 3567 LGGH--INKKRPTKIVHKGFLNIKYIACGQNHTICIGEN-VVWAFGEGEGGKLGIGSKKD 3623

Query: 326  TGQPMEV 332
               P E+
Sbjct: 3624 IYVPQEI 3630



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 130/275 (47%), Gaps = 38/275 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV-AGSRNSLAICDDGKT 59
           ++ T  + +WG G+ G+LG G+    +   +++     KV  +V AG R+S A+  DG+ 
Sbjct: 441 LSDTGEVYSWGDGDYGKLGHGDVATHKEPKLIQGPFIGKVIELVSAGYRHSAAVTSDGQL 500

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNE 102
            T                  IP+ V +LS+  +   A G  H LA    G   +++G  +
Sbjct: 501 YTWGEGDHGRLGHGDCNPRFIPTLVKSLSDMPVGYVACGSTHTLACSRDGNTVWSFGSGD 560

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            G+ G         G  +R  +  PQ+        +++VAAG   SV LT  G V+TWGQ
Sbjct: 561 NGKLGH--------GNTIR--LYKPQKIEGLRHYKIKKVAAGIHFSVALTCTGEVFTWGQ 610

Query: 161 PWPPG----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
               G    +I   S P  V+ L Q  +  I+VG  H LAL  + A++AWG+N  GQ G 
Sbjct: 611 GSNLGCGSSEITLFS-PAVVEDLMQQMIIDISVGDSHCLALTRNCAVYAWGSNGKGQCGQ 669

Query: 215 G-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
           G  T P S+P  V  L G  +  I+AG  HS A T
Sbjct: 670 GHSTSPVSRPSKVINLEGKQINQISAGTSHSVAWT 704



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 37/273 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
            +  T  + +WG G+ G+LG GNNE +    ++++L    V  V  G ++S  +  DG+  
Sbjct: 3496 LTETGEVFSWGDGDFGKLGHGNNERQRKPKLIESLYDVVVIQVACGHKHSAVLSQDGEVY 3555

Query: 60   ---KTEN----IPSQVNALSNTKIVQA--------AIGGWHCLAVDDQGRAYAWGGNEYG 104
                 E+    +   +N    TKIV          A G  H + + +    +A+G  E G
Sbjct: 3556 VFGSAEHGKLGLGGHINKKRPTKIVHKGFLNIKYIACGQNHTICIGEN-VVWAFGEGEGG 3614

Query: 105  QCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQP- 161
            + G         G   ++DI +PQ         +++   G   ++ L+ +G +++ G   
Sbjct: 3615 KLG--------IGS--KKDIYVPQEIITLNGKNIKKAYCGNGFTMFLSEDGELYSCGSDN 3664

Query: 162  -WPPGDI--KQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 D+   +  +P ++   QG + V  +A G  H L L   G +WAWGNN  G LG G
Sbjct: 3665 LQDATDVLYTEKLIPEKIFEFQG-QIVTDVATGPDHVLVLTARGHVWAWGNNCEGILGFG 3723

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
               P  +P+ +Q LS   +  IA    H  A T
Sbjct: 3724 HDLPVQKPMIIQILSDKNIKQIATSRTHCAAWT 3756



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 22/169 (13%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++ WG+N   Q   G T+    P  V+ LS +  V+  AG + +  +   G V   G+  
Sbjct: 344 VFMWGSNSSNQHAEGATEVTDIPRLVRSLSDVQQVE--AGQYCTFIIDTKGCVSACGKNS 401

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS----CGGTHSVALTRDGHIFSFGRGDHG 316
           +GRLG G++  S++ VP+++N+     I QVS    C G HS+AL+  G ++S+G GD+G
Sbjct: 402 YGRLGLGNS--SNQPVPKRININC--KIKQVSSSKGCDG-HSLALSDTGEVYSWGDGDYG 456

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +LG+G   T  +P  +          G  + +  + +LV+ G RH+ A+
Sbjct: 457 KLGHGDVATHKEPKLI---------QGPFIGK--VIELVSAGYRHSAAV 494



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 27/171 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ ++GSG++G+LG GN         ++ L  YK++ V AG   S+A+   G+  T    
Sbjct: 552 TVWSFGSGDNGKLGHGNTIRLYKPQKIEGLRHYKIKKVAAGIHFSVALTCTGEVFTWGQG 611

Query: 62  ENI-----------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
            N+           P+ V  L    I+  ++G  HCLA+      YAWG N  GQCG+  
Sbjct: 612 SNLGCGSSEITLFSPAVVEDLMQQMIIDISVGDSHCLALTRNCAVYAWGSNGKGQCGQ-- 669

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT-----REGHVW 156
                T  + R   VI         + Q++AG +HSV  T     R+ +VW
Sbjct: 670 --GHSTSPVSRPSKVINLEGKQ---INQISAGTSHSVAWTTLPPDRQTNVW 715


>gi|159037224|ref|YP_001536477.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916059|gb|ABV97486.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 558

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 151/390 (38%), Gaps = 44/390 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +I+AWG+   GQLG G+   R     V       V +V  G  +SLA+            
Sbjct: 58  TILAWGANNVGQLGDGSTIARNAPVAVSLPPDTTVTAVAGGDSHSLALTSAGAVLAWGEN 117

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G     ++P  V    +T +V  A    H LA+   G   AWG N  GQ G  
Sbjct: 118 NFGQLGTGNNLNSSVPITVALPPDTTVVAIAASHGHSLALTSAGAVLAWGANNVGQLGN- 176

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                  G     +  +     P   V  +AAG  HS+ +T  G    WG          
Sbjct: 177 -------GNTFNSNTPVTVNLPPGTTVATIAAGTNHSLAITSTGAALAWGGNGNGQLGNN 229

Query: 170 IS------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            +      + V +     +  IA G+ ++LA+   G   AWG N  GQLGTG+      P
Sbjct: 230 STATSLEPIAVTLPPSTTITAIAAGSSYSLAITSTGTALAWGGNSNGQLGTGNNADSLIP 289

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           I V    G T+  IAAG  HS A+T  G    WG    G+LG G    S    P  VNL 
Sbjct: 290 IAVALPPGTTITSIAAGFTHSLAVTSTGTALAWGGNSRGQLGIGTTTNSDT--PVIVNLP 347

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
               I     G  HS+     G   ++G    G+LG G    +  P+ V +       +G
Sbjct: 348 PDTTITTNDGGFFHSLGSMSTGAALAWGNNFSGQLGTGNNTNSLDPIAVAL------PSG 401

Query: 344 DGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
             +        +A GG H+LA+V   T  +
Sbjct: 402 TKITT------IAAGGGHSLALVAPPTSTT 425



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 112/271 (41%), Gaps = 34/271 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S  +++AWG+   GQLG GN         V       V ++ AG+ +SLAI   G   
Sbjct: 157 LTSAGAVLAWGANNVGQLGNGNTFNSNTPVTVNLPPGTTVATIAAGTNHSLAITSTGAAL 216

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T T   P  V    +T I   A G  + LA+   G A AWGGN  G
Sbjct: 217 AWGGNGNGQLGNNSTATSLEPIAVTLPPSTTITAIAAGSSYSLAITSTGTALAWGGNSNG 276

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWG--- 159
           Q G        TG     D +IP   A  P   +  +AAG THS+ +T  G    WG   
Sbjct: 277 QLG--------TGN--NADSLIPIAVALPPGTTITSIAAGFTHSLAVTSTGTALAWGGNS 326

Query: 160 -QPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G       PV V       +     G FH+L     GA  AWGNN  GQLGTG+
Sbjct: 327 RGQLGIGTTTNSDTPVIVNLPPDTTITTNDGGFFHSLGSMSTGAALAWGNNFSGQLGTGN 386

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
                 PI V   SG  +  IAAGG HS AL
Sbjct: 387 NTNSLDPIAVALPSGTKITTIAAGGGHSLAL 417


>gi|403331454|gb|EJY64675.1| putative protein similar to vertebrate hect domain and RLD 3 (HERC3)
            [Oxytricha trifallax]
          Length = 2049

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 159/350 (45%), Gaps = 63/350 (18%)

Query: 7    IIAWGSGEDGQLGIGNNEER-------EWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
            +  WG+ + GQLG+G+N  +         + + K+ E Y     + GS     +C  G  
Sbjct: 1654 VFVWGANQTGQLGLGDNSPQILSAGYEHSIAITKSNELY-----IWGSG---GLCGIGTL 1705

Query: 60   KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--EEPERKDDTG 117
            K +N P +++  + +KI+ A  GG H +AV     AY+WG  E GQ G  +    K   G
Sbjct: 1706 KQQNAPVKIDFFNKSKILTAVCGGLHTVAVTKDWEAYSWGLTEGGQLGLPQSTIVKLCQG 1765

Query: 118  RILRRDIVIPQRCAPK---LIVRQVAAGGTHSVVLTREGHVWTWGQ-------------P 161
            +     ++ PQR  PK   L + QVA G  HS+ +T++G ++ WGQ              
Sbjct: 1766 QGDEPQVLTPQRI-PKLEGLQIAQVACGEAHSIAMTKDGTIYGWGQSNYGQLGLGFSGDS 1824

Query: 162  WPPG---DIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            + PG   +  ++  P  + GL  E++  I  GA   L   + G L+  G N+ GQLG   
Sbjct: 1825 FEPGLGMEKSKVYEPQEINGLKHEKISKIICGATFTLFQTDKGDLYGCGVNDLGQLGLDT 1884

Query: 217  TQPRSQ--------------------PIPVQGLSGLTLVDIAAGGWHSTALTDDG--EVY 254
                 Q                    P  V    G+ +  IA G  HS A++ DG   ++
Sbjct: 1885 FMEEMQIASLEKVKKGKHNQTSDVILPTRVICFQGIAIHQIACGESHSLAVSGDGMNMLW 1944

Query: 255  GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
             WG  ++G+LG G  + + K+ P+ V  L    I +++CG  HSVAL  D
Sbjct: 1945 AWGMFKNGQLGLG--EVTMKLNPRPVQSLCSSQIQRIACGSMHSVALIGD 1992



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 49/281 (17%)

Query: 65   PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
            P  + +L +  I +   G  H + ++  G+ + WG N+ GQ G      D++ +IL    
Sbjct: 1624 PRMIISLKDEVIREVCCGNSHTMVINMSGQVFVWGANQTGQLG----LGDNSPQIL---- 1675

Query: 125  VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--WPPGDIKQISVPVRVQGLEQV 182
                           +AG  HS+ +T+   ++ WG       G +KQ + PV++    + 
Sbjct: 1676 ---------------SAGYEHSIAITKSNELYIWGSGGLCGIGTLKQQNAPVKIDFFNKS 1720

Query: 183  KLIAV--GAFHNLALQEDGALWAWGNNEYGQLG------------TGDTQPRSQPIPVQG 228
            K++    G  H +A+ +D   ++WG  E GQLG             GD      P  +  
Sbjct: 1721 KILTAVCGGLHTVAVTKDWEAYSWGLTEGGQLGLPQSTIVKLCQGQGDEPQVLTPQRIPK 1780

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN----------DKSSKMVPQ 278
            L GL +  +A G  HS A+T DG +YGWG+  +G+LG G +          +KS    PQ
Sbjct: 1781 LEGLQIAQVACGEAHSIAMTKDGTIYGWGQSNYGQLGLGFSGDSFEPGLGMEKSKVYEPQ 1840

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            ++N L  E I ++ CG T ++  T  G ++  G  D G+LG
Sbjct: 1841 EINGLKHEKISKIICGATFTLFQTDKGDLYGCGVNDLGQLG 1881



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/315 (26%), Positives = 154/315 (48%), Gaps = 45/315 (14%)

Query: 72   SNTKIVQAAIGGWHCLAVDDQ---GRAYAWGGNEYGQCGEEPERKDD-------TGRILR 121
            S ++I+   +GG     ++ Q   G  ++ G +  GQ G +   +DD       + ++L 
Sbjct: 1569 SYSQILGKEVGG-----INKQEMCGILFSMGTDNNGQLGLDVLSQDDQHSSHTPSIKVLY 1623

Query: 122  RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQ 181
              ++I  +     ++R+V  G +H++V+   G V+ WG         Q+ +     G   
Sbjct: 1624 PRMIISLK---DEVIREVCCGNSHTMVINMSGQVFVWGA----NQTGQLGL-----GDNS 1671

Query: 182  VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
             ++++ G  H++A+ +   L+ WG+   G  G G  + ++ P+ +   +   ++    GG
Sbjct: 1672 PQILSAGYEHSIAITKSNELYIWGSG--GLCGIGTLKQQNAPVKIDFFNKSKILTAVCGG 1729

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGF----------GDNDKSSKMVPQKVNLLAGEDIVQV 291
             H+ A+T D E Y WG  E G+LG           G  D+   + PQ++  L G  I QV
Sbjct: 1730 LHTVAVTKDWEAYSWGLTEGGQLGLPQSTIVKLCQGQGDEPQVLTPQRIPKLEGLQIAQV 1789

Query: 292  SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP---MEVPINIPAPRNAGDGVDR 348
            +CG  HS+A+T+DG I+ +G+ ++G+LG G    + +P   ME    +  P+   +G+  
Sbjct: 1790 ACGEAHSIAMTKDGTIYGWGQSNYGQLGLGFSGDSFEPGLGMEKS-KVYEPQEI-NGLKH 1847

Query: 349  RWIAKLVACGGRHTL 363
              I+K++ CG   TL
Sbjct: 1848 EKISKII-CGATFTL 1861



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 44/184 (23%)

Query: 199  GALWAWGNNEYGQLG----TGDTQPRSQ--------PIPVQGLSGLTLVDIAAGGWHSTA 246
            G L++ G +  GQLG    + D Q  S         P  +  L    + ++  G  H+  
Sbjct: 1588 GILFSMGTDNNGQLGLDVLSQDDQHSSHTPSIKVLYPRMIISLKDEVIREVCCGNSHTMV 1647

Query: 247  LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
            +   G+V+ WG  + G+LG GDN       PQ +           S G  HS+A+T+   
Sbjct: 1648 INMSGQVFVWGANQTGQLGLGDNS------PQIL-----------SAGYEHSIAITKSNE 1690

Query: 307  IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            ++ +G G  G  G G    T +    P+ I       D  ++  I   V CGG HT+A+ 
Sbjct: 1691 LYIWGSG--GLCGIG----TLKQQNAPVKI-------DFFNKSKILTAV-CGGLHTVAVT 1736

Query: 367  -EWQ 369
             +W+
Sbjct: 1737 KDWE 1740


>gi|408500623|ref|YP_006864542.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465447|gb|AFU70976.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1271

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 175/389 (44%), Gaps = 53/389 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEER-EWVCVVKALEPYKVRSVVAGSRNSL-------- 51
            + S  ++ +WG+ + GQLG G   +R   V + K     +   V AG+  SL        
Sbjct: 776  LGSDGNVYSWGANKYGQLGDGTATDRLTPVQIPKPTGVNRFTQVSAGTGFSLALDGQGHV 835

Query: 52   --------------AICDDGKTKTENIPSQVNALS-----NTKIVQAAIGGWHCLAVDDQ 92
                          AI  +G +   + P +V A S     N  +   + G  H LAVD Q
Sbjct: 836  WAWGLNSSGQLGSNAIATNGSSAYSSSPIRVQAPSGMTATNFTLTGISAGITHVLAVDGQ 895

Query: 93   GRAYAWGGNEYGQCGEEPERKDDTGRILRR-DIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            GRA+ WG NE+G+ G        TG   R   +  PQ         QV+AGG+HS+    
Sbjct: 896  GRAWGWGSNEFGKLGVPASTVATTGITTRPVQVATPQGETTGFHYAQVSAGGSHSLATDT 955

Query: 152  EGHVWTWG--QPWPPGDIKQISV------PVRVQ-------GLEQVKLIAVGAFHNLALQ 196
            +G  W WG  Q    G+   +++      PV+ +       G    ++IA G+ H+LAL 
Sbjct: 956  QGRAWGWGSNQNGALGNTSDVALNGYTTTPVQAKPGTNPSGGFNPAQIIA-GSGHSLALD 1014

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPV---QGLSGLTLVDIAAGGWHSTALTDDGEV 253
            + G +W+WG N  G+LG GDT  R+ P  V     +S  T +  +    +S AL  +G +
Sbjct: 1015 DLGRIWSWGGNSNGELGLGDTTTRTAPSMVAMPANVSTFTQLTGSRVSGNSLALDQNGNI 1074

Query: 254  YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED-IVQVSCGGTHSVALTRDGHIFSFGR 312
            +GWG+   G LG G     ++  P K++  +G D  V+V  G  H++A+  DG    +G 
Sbjct: 1075 WGWGQNSSGMLGTGGTGSLNR--PTKMSNPSGIDHFVKVCAGTGHTLAVASDGSTLGWGD 1132

Query: 313  GDHGRLGYGRKVTTGQPMEV--PINIPAP 339
               GRLG     T   P+ V  P  +  P
Sbjct: 1133 NSQGRLGNNATETVYSPVSVLFPFRLGTP 1161



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 136/316 (43%), Gaps = 44/316 (13%)

Query: 55   DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            D G+TK   +P     +   +  Q + G  H LA+   G  Y+WG N+YGQ G      D
Sbjct: 745  DSGQTKVTLVPPAARGI---RFSQVSAGDDHSLALGSDGNVYSWGANKYGQLG------D 795

Query: 115  DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----------QPWPP 164
             T       + IP+         QV+AG   S+ L  +GHVW WG               
Sbjct: 796  GTATDRLTPVQIPKPTGVNRFT-QVSAGTGFSLALDGQGHVWAWGLNSSGQLGSNAIATN 854

Query: 165  GDIKQISVPVRVQ---GLEQVKL----IAVGAFHNLALQEDGALWAWGNNEYGQLG---- 213
            G     S P+RVQ   G+         I+ G  H LA+   G  W WG+NE+G+LG    
Sbjct: 855  GSSAYSSSPIRVQAPSGMTATNFTLTGISAGITHVLAVDGQGRAWGWGSNEFGKLGVPAS 914

Query: 214  ----TG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--- 265
                TG  T+P     P    +G     ++AGG HS A    G  +GWG  ++G LG   
Sbjct: 915  TVATTGITTRPVQVATPQGETTGFHYAQVSAGGSHSLATDTQGRAWGWGSNQNGALGNTS 974

Query: 266  -FGDNDKSSKMVPQK--VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
                N  ++  V  K   N   G +  Q+  G  HS+AL   G I+S+G   +G LG G 
Sbjct: 975  DVALNGYTTTPVQAKPGTNPSGGFNPAQIIAGSGHSLALDDLGRIWSWGGNSNGELGLGD 1034

Query: 323  KVTTGQP--MEVPINI 336
              T   P  + +P N+
Sbjct: 1035 TTTRTAPSMVAMPANV 1050



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 134/312 (42%), Gaps = 37/312 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV---IPQRCA 131
           K  Q   G  H LA+   G  YAWG N  GQ G       D    LR+  V    P   +
Sbjct: 205 KFSQITSGATHSLALGSDGSLYAWGDNSSGQVG-------DNSTTLRQTPVKTNKPANAS 257

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVK---- 183
            +     +AAG   S+ +  +G+++ WG         G  +    PV+V     V     
Sbjct: 258 DQFTFTTIAAGDHSSLAIGSDGNLYAWGNNTRGQLGDGTTENKLTPVKVPKPAGVSNEFT 317

Query: 184 --LIAVGAFHNLALQEDGALWAWGNNEYGQLG-----TGDTQP---RSQPIPVQGLSGLT 233
              ++    H LAL  +  L+AWG N YGQLG     TG   P    S+P+ V   +G+T
Sbjct: 318 WTQVSARWDHTLALGSNHNLYAWGWNGYGQLGNTSVPTGSDNPAAYSSKPVLVSTPAGVT 377

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              ++AG +HS AL  D ++Y WG    GRLG G + +  +  P  V   AG    Q S 
Sbjct: 378 FTQLSAGRYHSLALGSDKQLYAWGLNTSGRLGDGTDIQ--RFTPVPVRQPAGVTFSQFSA 435

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G T   A++ +G ++++G   +GRLG G      +    P  I  P    DG    +   
Sbjct: 436 GDTSCFAISTNGDLYAWGWNGYGRLGDGSNA---EDRRTPTLISPP----DGASAGFTWA 488

Query: 354 LVACGGRHTLAI 365
            V     H LAI
Sbjct: 489 RVMVRDDHVLAI 500



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 141/334 (42%), Gaps = 45/334 (13%)

Query: 39  KVRSVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTK----IVQ 78
           K   + +G+ +SLA+  DG                 T     P + N  +N         
Sbjct: 205 KFSQITSGATHSLALGSDGSLYAWGDNSSGQVGDNSTTLRQTPVKTNKPANASDQFTFTT 264

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
            A G    LA+   G  YAWG N  GQ G+         ++    +  P   + +    Q
Sbjct: 265 IAAGDHSSLAIGSDGNLYAWGNNTRGQLGDGTTEN----KLTPVKVPKPAGVSNEFTWTQ 320

Query: 139 VAAGGTHSVVLTREGHVWTWGQPW-----------PPGD---IKQISVPVRVQGLEQVKL 184
           V+A   H++ L    +++ WG  W           P G        S PV V     V  
Sbjct: 321 VSARWDHTLALGSNHNLYAWG--WNGYGQLGNTSVPTGSDNPAAYSSKPVLVSTPAGVTF 378

Query: 185 --IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
             ++ G +H+LAL  D  L+AWG N  G+LG G    R  P+PV+  +G+T    +AG  
Sbjct: 379 TQLSAGRYHSLALGSDKQLYAWGLNTSGRLGDGTDIQRFTPVPVRQPAGVTFSQFSAGDT 438

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
              A++ +G++Y WG   +GRLG G N    ++  ++       AG    +V     H +
Sbjct: 439 SCFAISTNGDLYAWGWNGYGRLGDGSNAEDRRTPTLISPPDGASAGFTWARVMVRDDHVL 498

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           A+  DG+++S+G  ++G+LG     T G  +  P
Sbjct: 499 AIGSDGNLYSWGLNEYGQLGIKDINTDGSYISRP 532



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 152/365 (41%), Gaps = 50/365 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           + S  S+ AWG    GQ+G  +   R+    VK  +P      +   ++ AG  +SLAI 
Sbjct: 219 LGSDGSLYAWGDNSSGQVGDNSTTLRQ--TPVKTNKPANASDQFTFTTIAAGDHSSLAIG 276

Query: 55  DDGKT--------------KTEN------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGR 94
            DG                 TEN      +P      +     Q +    H LA+     
Sbjct: 277 SDGNLYAWGNNTRGQLGDGTTENKLTPVKVPKPAGVSNEFTWTQVSARWDHTLALGSNHN 336

Query: 95  AYAWGGNEYGQCGEE--PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
            YAWG N YGQ G    P   D+      + +++       +   Q++AG  HS+ L  +
Sbjct: 337 LYAWGWNGYGQLGNTSVPTGSDNPAAYSSKPVLVSTPAG--VTFTQLSAGRYHSLALGSD 394

Query: 153 GHVWTWG-----QPWPPGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGN 206
             ++ WG     +     DI++ + VPVR          + G     A+  +G L+AWG 
Sbjct: 395 KQLYAWGLNTSGRLGDGTDIQRFTPVPVRQPAGVTFSQFSAGDTSCFAISTNGDLYAWGW 454

Query: 207 NEYGQLGTG-DTQPRSQPI---PVQGLS-GLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           N YG+LG G + + R  P    P  G S G T   +     H  A+  DG +Y WG  E+
Sbjct: 455 NGYGRLGDGSNAEDRRTPTLISPPDGASAGFTWARVMVRDDHVLAIGSDGNLYSWGLNEY 514

Query: 262 GRLGFGD--NDKSSKMVPQKVNLLAGEDI-----VQVSCGGTHSVALTRDGHIFSFGRGD 314
           G+LG  D   D S    P  V+             Q++ G   S AL  DG+++++G  +
Sbjct: 515 GQLGIKDINTDGSYISRPHIVDQSTSSTAQKFTWTQINAGWRESSALGSDGNLYTWGWNN 574

Query: 315 HGRLG 319
            G+LG
Sbjct: 575 GGQLG 579



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 131/287 (45%), Gaps = 32/287 (11%)

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
            GQ    P +  D+G+  +  +V P   A  +   QV+AG  HS+ L  +G+V++WG    
Sbjct: 734  GQWTISPNQGPDSGQT-KVTLVPP--AARGIRFSQVSAGDDHSLALGSDGNVYSWGANKY 790

Query: 161  -PWPPGDIKQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT-- 214
                 G       PV++    G+ +   ++ G   +LAL   G +WAWG N  GQLG+  
Sbjct: 791  GQLGDGTATDRLTPVQIPKPTGVNRFTQVSAGTGFSLALDGQGHVWAWGLNSSGQLGSNA 850

Query: 215  ----GDTQPRSQPIPVQGLSGLT-----LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
                G +   S PI VQ  SG+T     L  I+AG  H  A+   G  +GWG  E G+LG
Sbjct: 851  IATNGSSAYSSSPIRVQAPSGMTATNFTLTGISAGITHVLAVDGQGRAWGWGSNEFGKLG 910

Query: 266  FGDNDKSSKMV---PQKVNLLAGEDI----VQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
               +  ++  +   P +V    GE       QVS GG+HS+A    G  + +G   +G L
Sbjct: 911  VPASTVATTGITTRPVQVATPQGETTGFHYAQVSAGGSHSLATDTQGRAWGWGSNQNGAL 970

Query: 319  GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G    V        P+      N   G +    A+++A  G H+LA+
Sbjct: 971  GNTSDVALNGYTTTPVQAKPGTNPSGGFNP---AQIIAGSG-HSLAL 1013



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 135/358 (37%), Gaps = 70/358 (19%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV--------------RSVVAGSRNSL 51
           ++ AWG+   GQLG G  E +  +  VK  +P  V               ++  GS ++L
Sbjct: 280 NLYAWGNNTRGQLGDGTTENK--LTPVKVPKPAGVSNEFTWTQVSARWDHTLALGSNHNL 337

Query: 52  ----------------AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA 95
                               D      + P  V+  +     Q + G +H LA+    + 
Sbjct: 338 YAWGWNGYGQLGNTSVPTGSDNPAAYSSKPVLVSTPAGVTFTQLSAGRYHSLALGSDKQL 397

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           YAWG N  G+ G+        G  ++R   +P R    +   Q +AG T    ++  G +
Sbjct: 398 YAWGLNTSGRLGD--------GTDIQRFTPVPVRQPAGVTFSQFSAGDTSCFAISTNGDL 449

Query: 156 WTWGQPWPP----GDIKQ---------ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALW 202
           + WG  W      GD            IS P           + V   H LA+  DG L+
Sbjct: 450 YAWG--WNGYGRLGDGSNAEDRRTPTLISPPDGASAGFTWARVMVRDDHVLAIGSDGNLY 507

Query: 203 AWGNNEYGQLGTGDTQPR----SQP-IPVQGLSG----LTLVDIAAGGWHSTALTDDGEV 253
           +WG NEYGQLG  D        S+P I  Q  S      T   I AG   S+AL  DG +
Sbjct: 508 SWGLNEYGQLGIKDINTDGSYISRPHIVDQSTSSTAQKFTWTQINAGWRESSALGSDGNL 567

Query: 254 YGWGRGEHGRLGF------GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           Y WG    G+LG        DN ++ ++ P         D+  V    T    L R G
Sbjct: 568 YTWGWNNGGQLGDPTVPIGTDNSQAMRLTPSLAAFPLSPDVTAVKFDRTLGRDLKRAG 625



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 14/139 (10%)

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED--- 287
           G+    I +G  HS AL  DG +Y WG    G++  GDN  + +  P K N  A      
Sbjct: 203 GIKFSQITSGATHSLALGSDGSLYAWGDNSSGQV--GDNSTTLRQTPVKTNKPANASDQF 260

Query: 288 -IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
               ++ G   S+A+  DG+++++G    G+LG G    T +    P+ +P P     GV
Sbjct: 261 TFTTIAAGDHSSLAIGSDGNLYAWGNNTRGQLGDG----TTENKLTPVKVPKPA----GV 312

Query: 347 DRRWIAKLVACGGRHTLAI 365
              +    V+    HTLA+
Sbjct: 313 SNEFTWTQVSARWDHTLAL 331


>gi|302753472|ref|XP_002960160.1| hypothetical protein SELMODRAFT_73640 [Selaginella moellendorffii]
 gi|300171099|gb|EFJ37699.1| hypothetical protein SELMODRAFT_73640 [Selaginella moellendorffii]
          Length = 435

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 180/404 (44%), Gaps = 65/404 (16%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALE--------------PYKVR----SVVAGSRNS 50
           AWG G  GQ+G G+ +  +   ++  L+              P K R     V  G  +S
Sbjct: 39  AWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGLFHS 98

Query: 51  LAIC----------DDGKTKTENIPSQVNALSNTKIVQ---AAIGGWHCLAVDDQGRAYA 97
           +             D G+   +   +Q     N +I +   A+ GG H +A+ + G  Y 
Sbjct: 99  VLFAEQDVFVWGKGDGGRLGIDTEFNQYKPYVNPRIKRVQMASAGGLHNIALTEVGNVYT 158

Query: 98  WGGNEYGQCGEEPERKDDTGRILR---RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
           WG   +G  G     ++   R+L    +D ++            V+AGG+H+  +T  G 
Sbjct: 159 WGYGAFGALGHGSYERELLPRLLEGPWKDRIV-----------HVSAGGSHTAAVTESGE 207

Query: 155 VWTWGQPWPPG----------DIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWA 203
           ++TWG+    G          D   +S P +VQ L+  + L+  G F  +AL + G LW+
Sbjct: 208 LYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQALDVPIALVYCGGFFTMALTKSGQLWS 267

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG N   +LG G      +P  V  L  +TLV +A GG+H+ ALT DG+V  WG G +G+
Sbjct: 268 WGGNANHELGHGTRANNWKPKVVAALEDVTLVQVACGGFHAAALTQDGKVITWGYGGNGQ 327

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GR 322
           LG G  +   +  P  V  +A +    ++CG   + A+T +G ++++G+    +LG  G 
Sbjct: 328 LGHGTLENGKE--PAIVEAMADKTCTYIACGPAWTAAITENGDLYTWGKNRDYQLGIPGL 385

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           K     P  V +  P   +    V+       V+CG  H + IV
Sbjct: 386 KDEQLDP--VLVQFPQALHEKTPVE----VLGVSCGANHGVCIV 423



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 145/329 (44%), Gaps = 34/329 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + +   +  WG G+ G+LGI + E  ++   V      +V+   AG  +++A+ + G   
Sbjct: 100 LFAEQDVFVWGKGDGGRLGI-DTEFNQYKPYVNP-RIKRVQMASAGGLHNIALTEVGNVY 157

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE-Y 103
           T                E +P  +      +IV  + GG H  AV + G  Y WG +E  
Sbjct: 158 TWGYGAFGALGHGSYERELLPRLLEGPWKDRIVHVSAGGSHTAAVTESGELYTWGRDEGE 217

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---- 159
           G+ G       D G + R   V     A  + +  V  GG  ++ LT+ G +W+WG    
Sbjct: 218 GRLGHGNPDIMDEGALSRPTKV----QALDVPIALVYCGGFFTMALTKSGQLWSWGGNAN 273

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                G       P  V  LE V L  +A G FH  AL +DG +  WG    GQLG G  
Sbjct: 274 HELGHGTRANNWKPKVVAALEDVTLVQVACGGFHAAALTQDGKVITWGYGGNGQLGHGTL 333

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMV 276
           +   +P  V+ ++  T   IA G   + A+T++G++Y WG+    +LG  G  D+    V
Sbjct: 334 ENGKEPAIVEAMADKTCTYIACGPAWTAAITENGDLYTWGKNRDYQLGIPGLKDEQLDPV 393

Query: 277 ----PQKVNLLAGEDIVQVSCGGTHSVAL 301
               PQ ++     +++ VSCG  H V +
Sbjct: 394 LVQFPQALHEKTPVEVLGVSCGANHGVCI 422



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 40/294 (13%)

Query: 96  YAWGGNEYGQCGEEPERKD------DTGRILRRDIVIPQR----CAPKLIVRQVAAGGTH 145
           +AWG   +GQ G   E  +       T ++     + P +      P+L    V  G  H
Sbjct: 38  WAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGLFH 97

Query: 146 SVVLTREGHVWTWGQPWPPGDIKQISV--------PVRVQGLEQVKLIAVGAFHNLALQE 197
           SV+   E  V+ WG+    GD  ++ +        P     +++V++ + G  HN+AL E
Sbjct: 98  SVLFA-EQDVFVWGK----GDGGRLGIDTEFNQYKPYVNPRIKRVQMASAGGLHNIALTE 152

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            G ++ WG   +G LG G  +    P  ++G     +V ++AGG H+ A+T+ GE+Y WG
Sbjct: 153 VGNVYTWGYGAFGALGHGSYERELLPRLLEGPWKDRIVHVSAGGSHTAAVTESGELYTWG 212

Query: 258 RGE-HGRLGFGD---NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           R E  GRLG G+    D+ +   P KV  L    I  V CGG  ++ALT+ G ++S+G  
Sbjct: 213 RDEGEGRLGHGNPDIMDEGALSRPTKVQAL-DVPIALVYCGGFFTMALTKSGQLWSWGGN 271

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +  LG+G +    +P  V             ++   + + VACGG H  A+ +
Sbjct: 272 ANHELGHGTRANNWKPKVVA-----------ALEDVTLVQ-VACGGFHAAALTQ 313



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPI--------------PVQGLSG----LTLVDIAAGGW 242
           +WAWG   +GQ+G G       P+              P+QG       L  V +  G +
Sbjct: 37  VWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGLF 96

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           HS    +  +V+ WG+G+ GRLG    D         VN    + +   S GG H++ALT
Sbjct: 97  HSVLFAEQ-DVFVWGKGDGGRLGI---DTEFNQYKPYVNPRI-KRVQMASAGGLHNIALT 151

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL--VACGGR 360
             G+++++G G  G LG+G      +   +P  +  P          W  ++  V+ GG 
Sbjct: 152 EVGNVYTWGYGAFGALGHGSY----ERELLPRLLEGP----------WKDRIVHVSAGGS 197

Query: 361 HTLAIVE 367
           HT A+ E
Sbjct: 198 HTAAVTE 204



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 31/132 (23%)

Query: 252 EVYGWGRGEHGRLGFGDNDKS--------------SKMVPQKVNLLAGEDI--VQVSCGG 295
           EV+ WGRG HG++G G  D                + M P +  + A   +  V V+CG 
Sbjct: 36  EVWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGL 95

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HSV L  +  +F +G+GD GRLG   +    +P   P              R    ++ 
Sbjct: 96  FHSV-LFAEQDVFVWGKGDGGRLGIDTEFNQYKPYVNP--------------RIKRVQMA 140

Query: 356 ACGGRHTLAIVE 367
           + GG H +A+ E
Sbjct: 141 SAGGLHNIALTE 152


>gi|91083383|ref|XP_967337.1| PREDICTED: similar to Sergef protein [Tribolium castaneum]
 gi|270006903|gb|EFA03351.1| hypothetical protein TcasGA2_TC013336 [Tribolium castaneum]
          Length = 364

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 178/397 (44%), Gaps = 71/397 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR-----------SVVAG--------S 47
           + +WG+   GQLG+G+  + E       + P +V              +AG         
Sbjct: 3   LYSWGANSYGQLGLGHKSDEE-------VSPKEVNLGDTDLVADNIVAIAGGAGHTLILD 55

Query: 48  RNSLAIC----DDGKTKTENIP---SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           +N    C      G+  T +     +Q+  L   +IVQ + G     AV + G+ + WG 
Sbjct: 56  KNGFVYCCGWNSKGQLGTSDDTLKITQIEILKGFRIVQISCGWDFSAAVSECGKQFVWGN 115

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT--- 157
           N Y Q G     K  T   +   + + Q+ A     +QV+ G  HS +L ++G +     
Sbjct: 116 NSYTQLGLS---KSITCTGIPSRLQVSQKLATGF--KQVSCGLRHSAMLNKDGGLLVAGT 170

Query: 158 -------WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                   G  +   +   IS   +V  LE +  IA G  H + L+EDG +++WG N+YG
Sbjct: 171 GSKGQLGLGDNFDDNNYLSIS---KVPDLEDIVSIASGQHHTVVLKEDGTVYSWGENKYG 227

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG  D    +  +P++ L    L  + AG  H+ AL+  GEV+ WGR  +G+LG     
Sbjct: 228 QLGI-DPNISNSFVPMEILHDANLGSVYAGWTHTAALSKSGEVFTWGRNSYGQLG---AQ 283

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           +     P+K+  L  +D+ Q+S G  H++A+T+DG +F +G  +HG  G G K    +P 
Sbjct: 284 REVTYKPEKIPGL--KDVTQLSVGSEHNLAVTKDGKLFVWGWNEHGSCGTGDKTDVCKPT 341

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           ++  N             R +    AC G  + A+VE
Sbjct: 342 QIFAN-------------RKVKAAFACTGS-SFAVVE 364



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 18/117 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++ +WG  + GQLGI  N    +V  ++ L    + SV AG  ++ A+   G+  T    
Sbjct: 217 TVYSWGENKYGQLGIDPNISNSFV-PMEILHDANLGSVYAGWTHTAALSKSGEVFTWGRN 275

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                         P ++  L +  + Q ++G  H LAV   G+ + WG NE+G CG
Sbjct: 276 SYGQLGAQREVTYKPEKIPGLKD--VTQLSVGSEHNLAVTKDGKLFVWGWNEHGSCG 330


>gi|395541970|ref|XP_003772909.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC6 [Sarcophilus harrisii]
          Length = 1032

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 57/321 (17%)

Query: 70  ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
           +L   +IVQAA G  H L +   G  ++ G N YGQ G             R++I   +R
Sbjct: 33  SLGGQQIVQAACGERHSLLLLADGTVWSCGNNSYGQLG-------------RKNIKKSKR 79

Query: 130 CAP-----KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK-QISVPVRVQGL 179
            AP       +V  V+ G  HS+ + + G +++WG          ++K Q S+P  +  L
Sbjct: 80  PAPIQALETQVVVSVSCGKEHSLAICKTGRIYSWGSGSRGQLGIKEVKDQCSIPKNIAAL 139

Query: 180 EQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVD 236
            + K+I V  G +H++AL +DG +++WG+N++GQLG G   P ++ P  V  L G+ L  
Sbjct: 140 SRDKIIQVSCGHYHSIALTQDGKVFSWGDNDHGQLGLGTNFPSQASPQRVNSLDGIPLAQ 199

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +AAGG HS AL+  G  YGWGR + G+L     + S       +N     +   ++C  +
Sbjct: 200 VAAGGSHSFALSLSGTSYGWGRNKEGQLALSGKNASV----VSINYCIWHEAEALTCKRS 255

Query: 297 HSVA--------LTR-----DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
           +S+         L R     DG + +FG  + G+LG+G              I  PR   
Sbjct: 256 NSIKEFQGLKELLNRSRQIADGKVLTFGSNNSGQLGHGL-------------ITKPR-GP 301

Query: 344 DGVDRRWIAKLVACGGRHTLA 364
             V+   +   +ACG  HTLA
Sbjct: 302 QIVESAELFSQIACGSHHTLA 322



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 14/187 (7%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           +Q+   A G  H+L L  DG +W+ GNN YGQLG  + +   +P P+Q L    +V ++ 
Sbjct: 37  QQIVQAACGERHSLLLLADGTVWSCGNNSYGQLGRKNIKKSKRPAPIQALETQVVVSVSC 96

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           G  HS A+   G +Y WG G  G+LG  +  D+ S  +P+ +  L+ + I+QVSCG  HS
Sbjct: 97  GKEHSLAICKTGRIYSWGSGSRGQLGIKEVKDQCS--IPKNIAALSRDKIIQVSCGHYHS 154

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           +ALT+DG +FS+G  DHG+LG G    T  P +     P   N+ DG+    +A+ VA G
Sbjct: 155 IALTQDGKVFSWGDNDHGQLGLG----TNFPSQAS---PQRVNSLDGIP---LAQ-VAAG 203

Query: 359 GRHTLAI 365
           G H+ A+
Sbjct: 204 GSHSFAL 210



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 36/247 (14%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI------------VRQVAAGG 143
           Y WG N + Q G       + GR          R +P+++            + Q A G 
Sbjct: 3   YCWGDNSFRQLG------INAGR----------RASPRVVRCREGASLGGQQIVQAACGE 46

Query: 144 THSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQE 197
            HS++L  +G VW+ G          +IK+   P  +Q LE   +++V  G  H+LA+ +
Sbjct: 47  RHSLLLLADGTVWSCGNNSYGQLGRKNIKKSKRPAPIQALETQVVVSVSCGKEHSLAICK 106

Query: 198 DGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            G +++WG+   GQLG  + + + S P  +  LS   ++ ++ G +HS ALT DG+V+ W
Sbjct: 107 TGRIYSWGSGSRGQLGIKEVKDQCSIPKNIAALSRDKIIQVSCGHYHSIALTQDGKVFSW 166

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G  +HG+LG G N   S+  PQ+VN L G  + QV+ GG+HS AL+  G  + +GR   G
Sbjct: 167 GDNDHGQLGLGTNF-PSQASPQRVNSLDGIPLAQVAAGGSHSFALSLSGTSYGWGRNKEG 225

Query: 317 RLGYGRK 323
           +L    K
Sbjct: 226 QLALSGK 232



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 136/331 (41%), Gaps = 74/331 (22%)

Query: 11  GSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--------- 61
           G+   GQLG  N ++ +    ++ALE   V SV  G  +SLAIC  G+  +         
Sbjct: 62  GNNSYGQLGRKNIKKSKRPAPIQALETQVVVSVSCGKEHSLAICKTGRIYSWGSGSRGQL 121

Query: 62  --------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                    +IP  + ALS  KI+Q + G +H +A+   G+ ++WG N++GQ G      
Sbjct: 122 GIKEVKDQCSIPKNIAALSRDKIIQVSCGHYHSIALTQDGKVFSWGDNDHGQLG------ 175

Query: 114 DDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP----- 161
                        P + +P+ +       + QVAAGG+HS  L+  G  + WG+      
Sbjct: 176 --------LGTNFPSQASPQRVNSLDGIPLAQVAAGGSHSFALSLSGTSYGWGRNKEGQL 227

Query: 162 ----------------WPPGD---IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALW 202
                           W   +    K+ +     QGL+++    +     +A   DG + 
Sbjct: 228 ALSGKNASVVSINYCIWHEAEALTCKRSNSIKEFQGLKEL----LNRSRQIA---DGKVL 280

Query: 203 AWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT-DDGEVYGWGRGE 260
            +G+N  GQLG G  T+PR  P  V+  S      IA G  H+ A     G+V  +G G 
Sbjct: 281 TFGSNNSGQLGHGLITKPRG-PQIVE--SAELFSQIACGSHHTLAYACTSGQVLSFGCGS 337

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
              L       S +      NL++  D   V
Sbjct: 338 QRHLTNSLQQGSLEQNFNISNLISSNDFTGV 368



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 19/171 (11%)

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQ-----GLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           + WG+N + QLG    + R+ P  V+      L G  +V  A G  HS  L  DG V+  
Sbjct: 3   YCWGDNSFRQLGINAGR-RASPRVVRCREGASLGGQQIVQAACGERHSLLLLADGTVWSC 61

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G   +G+LG  +  KS +  P  +  L  + +V VSCG  HS+A+ + G I+S+G G  G
Sbjct: 62  GNNSYGQLGRKNIKKSKR--PAPIQALETQVVVSVSCGKEHSLAICKTGRIYSWGSGSRG 119

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +LG           EV      P+N    + R  I + V+CG  H++A+ +
Sbjct: 120 QLGIK---------EVKDQCSIPKNIA-ALSRDKIIQ-VSCGHYHSIALTQ 159


>gi|17510153|ref|NP_490834.1| Protein HERC-1 [Caenorhabditis elegans]
 gi|351051254|emb|CCD73459.1| Protein HERC-1 [Caenorhabditis elegans]
          Length = 1019

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 150/309 (48%), Gaps = 33/309 (10%)

Query: 40  VRSVVAGSRNSLAICDDGK---------------TKTENIPS--QVNALSNTKIVQAAIG 82
           V SV  G ++++ +  DGK               ++TE   S   V+  S+ KI+Q + G
Sbjct: 43  VTSVTCGEQHTVFLTKDGKMWSVGSNMDGQLGRGSRTEGSFSIYPVSWTSSAKIIQISAG 102

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
             H ++V D GR +AWG NE+GQ G E +               P+R      + QVA+G
Sbjct: 103 RSHTVSVTDDGRVFAWGSNEHGQLGMESKFTWQG---------TPRRVQEINDIVQVASG 153

Query: 143 GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGA 200
             H + L   G V+ WG+     D + I  P  V+ L  V ++ V  GA H LAL   GA
Sbjct: 154 SNHCIALDEGGRVFVWGEQ---ADGRCIHRPEPVEQLSGVPIVRVLAGARHCLALSASGA 210

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           ++ WG N  G+LG  D +P++    V  + GL +V+ A G  H+  LT  G  + +G   
Sbjct: 211 VFTWGQNNSGELGIDDLRPQTSVQHVHQMDGLGVVEAACGDNHTVLLTHCGRTFSFGSDA 270

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+ GFG   +  +  P  V+ L G  + +++ G  H++A+ + G  + FG    G+LG 
Sbjct: 271 LGQCGFGKKVE-KRTNPTAVSDLIGSHVTRIAAGACHTIAICK-GAPYPFGLNSSGQLGN 328

Query: 321 GRKVTTGQP 329
           G+ +T   P
Sbjct: 329 GKIMTQSTP 337



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKAL-EPYKVRSVVAGSRNSLAICDDGKT------ 59
           + AWGS E GQLG+    +  W    + + E   +  V +GS + +A+ + G+       
Sbjct: 115 VFAWGSNEHGQLGM--ESKFTWQGTPRRVQEINDIVQVASGSNHCIALDEGGRVFVWGEQ 172

Query: 60  ---KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
              +  + P  V  LS   IV+   G  HCLA+   G  + WG N  G+ G +  R   +
Sbjct: 173 ADGRCIHRPEPVEQLSGVPIVRVLAGARHCLALSASGAVFTWGQNNSGELGIDDLRPQTS 232

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQIS 171
            + + +           L V + A G  H+V+LT  G  +++G     Q      +++ +
Sbjct: 233 VQHVHQ--------MDGLGVVEAACGDNHTVLLTHCGRTFSFGSDALGQCGFGKKVEKRT 284

Query: 172 VPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            P  V  L    V  IA GA H +A+ + GA + +G N  GQLG G    +S P     L
Sbjct: 285 NPTAVSDLIGSHVTRIAAGACHTIAICK-GAPYPFGLNSSGQLGNGKIMTQSTPRKTDEL 343

Query: 230 SGLTLVDIAAGGWHSTAL 247
             +T V     G+H T  
Sbjct: 344 DHVTGV---FAGYHQTFF 358


>gi|260814720|ref|XP_002602062.1| hypothetical protein BRAFLDRAFT_94436 [Branchiostoma floridae]
 gi|229287367|gb|EEN58074.1| hypothetical protein BRAFLDRAFT_94436 [Branchiostoma floridae]
          Length = 3971

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 147/284 (51%), Gaps = 37/284 (13%)

Query: 95   AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            AY WGG  +GQ  E       TGR L    V P         +Q+  G   + V+   G 
Sbjct: 3185 AYMWGGGRHGQLAE-------TGRSLLTPTVTPSFSQ----AQQIICGQNCTFVIQANGT 3233

Query: 155  VWTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWG 205
            V   G+            D+ Q+++   +QG    +L+       H++AL E G +++WG
Sbjct: 3234 VQACGEGSYGRLGQGNSDDLHQLTIISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWG 3293

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            + +YG+LG G++  + +P  ++ L G  ++ +A G  HS  ++ DG+++ +G G++GRLG
Sbjct: 3294 DGDYGKLGHGNSDRQRRPRQIEALQGEEIIQMACGFKHSAVVSADGKLFTFGNGDYGRLG 3353

Query: 266  FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKV 324
             G+   S+K +P++V  L G+ + QV CG  H++A++ DG+ ++SFG GD+G+LG G   
Sbjct: 3354 LGNT--SNKKIPERVTALEGQMVGQVGCGLNHTLAVSADGNTVWSFGDGDYGKLGLGNST 3411

Query: 325  TTGQPMEV-PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                P  V P+        G GV      K V CG + ++A+ +
Sbjct: 3412 AKSTPQRVDPL-------CGIGV------KKVCCGTQFSVALTK 3442



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 150/325 (46%), Gaps = 57/325 (17%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  ++  +  G ++S  +  DGK
Sbjct: 3281 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEIIQMACGFKHSAVVSADGK 3340

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGN 101
                            T  + IP +V AL    + Q   G  H LAV   G   +++G  
Sbjct: 3341 LFTFGNGDYGRLGLGNTSNKKIPERVTALEGQMVGQVGCGLNHTLAVSADGNTVWSFGDG 3400

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWG 159
            +YG+ G        T          PQR  P   + V++V  G   SV LT++G V+T+G
Sbjct: 3401 DYGKLGLGNSTAKST----------PQRVDPLCGIGVKKVCCGTQFSVALTKDGRVFTFG 3450

Query: 160  QP----WPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
            Q      P    +  + P +V  LE   V+ + VGA H+LAL   G +WAWG+N  GQLG
Sbjct: 3451 QERLIGQPESRSRNHNRPQQVPALEAFFVEDVVVGAEHSLALTSTGEVWAWGSNGDGQLG 3510

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
             GDT  R +P  V  L G  +  +                  WG    G+LG GD +  +
Sbjct: 3511 IGDTNARREPCLVTALQGKNVRQV------------------WGSNGDGQLGIGDTN--A 3550

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHS 298
            +  P  V  L G+++ Q+S G  HS
Sbjct: 3551 RREPCLVTDLQGKNVRQISAGRNHS 3575



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 39/303 (12%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + I       ++ 
Sbjct: 3216 QQIICGQNCTFVIQANGTVQACGEGSYGRLGQG--NSDDL-----HQLTIISALQGFVVT 3268

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKL 184
            + V + G+  HS+ LT  G V++WG     GD  ++          P +++ L  E++  
Sbjct: 3269 QLVTSCGSDGHSMALTESGEVFSWGD----GDYGKLGHGNSDRQRRPRQIEALQGEEIIQ 3324

Query: 185  IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
            +A G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +  G  H+
Sbjct: 3325 MACGFKHSAVVSADGKLFTFGNGDYGRLGLGNTSNKKIPERVTALEGQMVGQVGCGLNHT 3384

Query: 245  TALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
             A++ DG  V+ +G G++G+LG G++  ++K  PQ+V+ L G  + +V CG   SVALT+
Sbjct: 3385 LAVSADGNTVWSFGDGDYGKLGLGNS--TAKSTPQRVDPLCGIGVKKVCCGTQFSVALTK 3442

Query: 304  DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            DG +F+FG+         R     +P +VP                +  + V  G  H+L
Sbjct: 3443 DGRVFTFGQERLIGQPESRSRNHNRPQQVP------------ALEAFFVEDVVVGAEHSL 3490

Query: 364  AIV 366
            A+ 
Sbjct: 3491 ALT 3493



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 56/326 (17%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            ++ A G G  G+LG GN+++   + ++ AL+ + V                         
Sbjct: 3233 TVQACGEGSYGRLGQGNSDDLHQLTIISALQGFVV------------------------- 3267

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 3268 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 3319

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + +I           Q+A G  HS V++ +G ++T+G         G+     +P RV  
Sbjct: 3320 EEII-----------QMACGFKHSAVVSADGKLFTFGNGDYGRLGLGNTSNKKIPERVTA 3368

Query: 179  LE--QVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE   V  +  G  H LA+  DG  +W++G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 3369 LEGQMVGQVGCGLNHTLAVSADGNTVWSFGDGDYGKLGLGNSTAKSTPQRVDPLCGIGVK 3428

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +  G   S ALT DG V+ +G  +   +G  ++   +   PQ+V  L    +  V  G 
Sbjct: 3429 KVCCGTQFSVALTKDGRVFTFG--QERLIGQPESRSRNHNRPQQVPALEAFFVEDVVVGA 3486

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYG 321
             HS+ALT  G ++++G    G+LG G
Sbjct: 3487 EHSLALTSTGEVWAWGSNGDGQLGIG 3512


>gi|345494372|ref|XP_001602409.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Nasonia
           vitripennis]
          Length = 1083

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 147/338 (43%), Gaps = 82/338 (24%)

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHS 146
           + +    Y WG   YG+ G         G I   +I++P+         V Q+A G TH+
Sbjct: 22  IPNDNNMYCWGSTVYGELG--------LGGIEDENILMPRELDFQKATAVEQIACGETHT 73

Query: 147 VVLTREGHVWT--------------------------------------------WGQPW 162
           V++T++G V++                                            WGQ +
Sbjct: 74  VLITKDGEVFSCGNNDSGQLGHEKPTKRLQMIPGLDAFIFKQAACGASHSVAVNNWGQLF 133

Query: 163 -------------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
                         P  I      V+  G   V  IA G  H LAL  +G L+AWG+N  
Sbjct: 134 CWGSNADGQLGLGTPLTIAHTPRMVKALGTSIVVQIACGKKHTLALTNNGELYAWGSNSD 193

Query: 210 GQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           GQLG G D +  ++P  + GL+ + +  IA GG+HS  ++  G V+GWGR   G+LG   
Sbjct: 194 GQLGLGQDVKIETRPKLITGLATIPIAFIACGGYHSIVVSKSGAVFGWGRNTFGQLGM-- 251

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
           ND S K VP  +  L    +  V+CG   SV LT DG +F+ G G +G+LG+G       
Sbjct: 252 NDISDKYVPCLLKTLRNAKVKYVACGEEFSVFLTMDGGVFTCGAGMYGQLGHGANSNEIL 311

Query: 329 PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           P ++ I +      G  V +      ++CG RHTLA+V
Sbjct: 312 PRQI-IEL-----MGSVVTQ------ISCGKRHTLALV 337



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 156/322 (48%), Gaps = 36/322 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK---VRSVVAGSRNSLAICDDGKTKT- 61
           ++  WGS   G+LG+G  E+ E + + + L+  K   V  +  G  +++ I  DG+  + 
Sbjct: 27  NMYCWGSTVYGELGLGGIED-ENILMPRELDFQKATAVEQIACGETHTVLITKDGEVFSC 85

Query: 62  -ENIPSQVNALSNTK------------IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
             N   Q+     TK              QAA G  H +AV++ G+ + WG N  GQ G 
Sbjct: 86  GNNDSGQLGHEKPTKRLQMIPGLDAFIFKQAACGASHSVAVNNWGQLFCWGSNADGQLGL 145

Query: 109 -EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPW 162
             P     T R+++             IV Q+A G  H++ LT  G ++ WG     Q  
Sbjct: 146 GTPLTIAHTPRMVK--------ALGTSIVVQIACGKKHTLALTNNGELYAWGSNSDGQLG 197

Query: 163 PPGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              D+K  + P  + GL  +    IA G +H++ + + GA++ WG N +GQLG  D   +
Sbjct: 198 LGQDVKIETRPKLITGLATIPIAFIACGGYHSIVVSKSGAVFGWGRNTFGQLGMNDISDK 257

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  ++ L    +  +A G   S  LT DG V+  G G +G+LG G N  S++++P+++
Sbjct: 258 YVPCLLKTLRNAKVKYVACGEEFSVFLTMDGGVFTCGAGMYGQLGHGAN--SNEILPRQI 315

Query: 281 NLLAGEDIVQVSCGGTHSVALT 302
             L G  + Q+SCG  H++AL 
Sbjct: 316 IELMGSVVTQISCGKRHTLALV 337



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 16/134 (11%)

Query: 237 IAAGGWHS--TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           I A  +H     + +D  +Y WG   +G LG G  +  + ++P++++      + Q++CG
Sbjct: 10  IKADTFHLPLKLIPNDNNMYCWGSTVYGELGLGGIEDENILMPRELDFQKATAVEQIACG 69

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            TH+V +T+DG +FS G  D G+LG+ +     Q       IP       G+D  +I K 
Sbjct: 70  ETHTVLITKDGEVFSCGNNDSGQLGHEKPTKRLQ------MIP-------GLD-AFIFKQ 115

Query: 355 VACGGRHTLAIVEW 368
            ACG  H++A+  W
Sbjct: 116 AACGASHSVAVNNW 129



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 82/210 (39%), Gaps = 60/210 (28%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWGS  DGQLG+G +                                    K E  P 
Sbjct: 185 LYAWGSNSDGQLGLGQD-----------------------------------VKIETRPK 209

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            +  L+   I   A GG+H + V   G  + WG N +GQ G      +D       D  +
Sbjct: 210 LITGLATIPIAFIACGGYHSIVVSKSGAVFGWGRNTFGQLG-----MNDIS-----DKYV 259

Query: 127 PQRCAPKLI----VRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQ 177
           P  C  K +    V+ VA G   SV LT +G V+T     +GQ     +  +I +P ++ 
Sbjct: 260 P--CLLKTLRNAKVKYVACGEEFSVFLTMDGGVFTCGAGMYGQLGHGANSNEI-LPRQII 316

Query: 178 GL--EQVKLIAVGAFHNLAL-QEDGALWAW 204
            L    V  I+ G  H LAL    G ++AW
Sbjct: 317 ELMGSVVTQISCGKRHTLALVPSRGKVYAW 346



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 17/110 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ +  ++   C++K L   KV+ V  G   S+ +  DG   T    
Sbjct: 237 AVFGWGRNTFGQLGMNDISDKYVPCLLKTLRNAKVKYVACGEEFSVFLTMDGGVFTCGAG 296

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAW 98
                       E +P Q+  L  + + Q + G  H LA V  +G+ YAW
Sbjct: 297 MYGQLGHGANSNEILPRQIIELMGSVVTQISCGKRHTLALVPSRGKVYAW 346


>gi|325190927|emb|CCA25412.1| regulator of chromosome condensation (RCC1)like protein putative
           [Albugo laibachii Nc14]
          Length = 530

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 170/382 (44%), Gaps = 62/382 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC----VVKALEPYKVRSVVAGSRNSLAI--------- 53
           I+ +GSG+ GQL  G +E+ + +     VV+ L    +  +  G  ++ AI         
Sbjct: 117 ILTFGSGDCGQLAHGVDEDDDMIVMYPRVVQRLADISISFISCGGLHTAAISVDGSVYTW 176

Query: 54  -CDD----GKTKTENIPSQVNA---LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
            C+D    G+   EN P++V+    L   + +QA  G  H LA+   G  + WG      
Sbjct: 177 GCNDDGALGRNGEENFPAKVSGFGPLEKHQAIQAVAGDCHTLALTSSGEVFTWG------ 230

Query: 106 CGEEPERK-----DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG- 159
           C ++ E K      + G+  +     P        +  V  G   ++  T  G V++WG 
Sbjct: 231 CYKDKEGKLWCDAPNAGKAFKNKQTEPVLIHGLEDISDVRCGSCFNLARTSCGTVFSWGL 290

Query: 160 ----QPWPPGDIK---------------QISVPVRV----QGLEQVKLIAVGAFHNL-AL 195
               Q     D+                Q   P RV    + L  VK +  GA+H+L  +
Sbjct: 291 GEQGQLGRKADLNMKNEHDKYDTKLVFDQHLTPARVTLGTESLSDVKTMGCGAYHSLFVV 350

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
             +G L+A G N YGQLG G+T   S    V+ L    ++ +  G  HS  LT  GEVY 
Sbjct: 351 GGNGYLYACGLNNYGQLGIGNTCNSSDLALVEDLVAHNVMQVEGGTHHSAVLTVGGEVYT 410

Query: 256 WGRGEHGRLGFGDNDKS--SKMVPQKVNL---LAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           +GRG+ G+LG  D   S   K  PQKV +        I  +SCG  H++AL++D  +FS+
Sbjct: 411 FGRGDSGQLGMLDECTSGNYKDRPQKVVMDPKAKNTYITSISCGSNHAIALSKDNQVFSW 470

Query: 311 GRGDHGRLGYGRKVTTGQPMEV 332
           G GD   LG GR     +P ++
Sbjct: 471 GYGDMMALGNGRDEDELKPKKI 492


>gi|8131934|gb|AAF73143.1|AF148800_1 retinitis pigmentosa GTP-ase regulator RPGR [Canis lupus
           familiaris]
          Length = 918

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 154/316 (48%), Gaps = 26/316 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G     +  T
Sbjct: 70  GSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLGLGDTEERST 129

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             ++       QR      ++Q++AG   S  LT +G ++ WG          ++  + V
Sbjct: 130 FHLI--SFFTSQR-----KIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENVTNVCV 182

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ--PRSQPIPVQGLS 230
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG  +        P PV G+ 
Sbjct: 183 PQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPVPGIP 242

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +  + I  
Sbjct: 243 G-KVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETS-VPKAIEHIKDQKISF 299

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++CG  H+  +T  G +++FG G HG+LG G + +T Q +        P    + +  R+
Sbjct: 300 IACGENHTALITDMGLMYTFGDGRHGKLGLGLENSTNQFI--------PTLCSNFL--RF 349

Query: 351 IAKLVACGGRHTLAIV 366
           I +LV+CGG HTL   
Sbjct: 350 IVQLVSCGGCHTLVFA 365



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ V+T    ++      WGQ    G    +S P  V+ L  E+VK  A G  H
Sbjct: 40  LSCGDEHTAVVTGNNKLYMFGSNNWGQ-LGLGSKSTVSKPTCVKALKPEKVKFAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT+ RS    +    S   +  ++AG   S ALT+D
Sbjct: 99  TLVSTEGGKVYAAGGNNEGQLGLGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    + ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 159 GELFMWGDNSEGQIGL--ENVTNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGQLYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   ++     M  P+          G+  + +   VACGG HT+ + E
Sbjct: 215 GEPECGKLGLPNQLLVNHRMPQPV---------PGIPGKVVQ--VACGGGHTVVLTE 260



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 151/328 (46%), Gaps = 38/328 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKT+  ENIPS+     N      + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKTQFAENIPSKF-WFRNDVPTFLSCGDEHTAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  V    C   L    V+  A G  H++V T  G V+  G        
Sbjct: 69  --------LGSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLG 120

Query: 164 PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++ S    +       ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENV--T 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T +G++Y +G  E G+LG  +    +  +PQ V
Sbjct: 179 NVCVPQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             + G+ +VQV+CGG H+V LT    +++FG G  G+LG G  +          ++P   
Sbjct: 239 PGIPGK-VVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFL-------FETSVP--- 286

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            A + +  + I+  +ACG  HT  I + 
Sbjct: 287 KAIEHIKDQKIS-FIACGENHTALITDM 313


>gi|405954062|gb|EKC21598.1| Putative E3 ubiquitin-protein ligase HERC4 [Crassostrea gigas]
          Length = 1059

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 181/402 (45%), Gaps = 59/402 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           +  WG   DGQL IG +EE   +    V  L+   ++ +  G +++L +  DGK  +   
Sbjct: 4   VFGWGRSNDGQLSIGFSEETSILSPKEVSRLQELDIKEISCGEKHTLIVTKDGKLYSCGS 63

Query: 62  -----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                             ++   V++LS+ +++QAA G    L +   G  ++WG N+ G
Sbjct: 64  NEYGELGHSKPRSRAVSIDVVELVSSLSSMQVIQAAGGSEFSLVITTAGEVFSWGRNDKG 123

Query: 105 QCG-----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
           Q G     +E ERK    + L    V+           Q+  G  H + LT +G +++WG
Sbjct: 124 QLGRGKLSKEEERKPKLMKSLAVCTVV-----------QITCGANHCLALTDDGRLFSWG 172

Query: 160 ----------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
                           D  Q  V +R   + Q   IA G  H+  L    A++ WG N +
Sbjct: 173 CNKYGQLGLGSSHSFHDTPQQIVCLRGIPIAQ---IASGGNHSFILTWSRAVFGWGKNSF 229

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG  D   +S P   + L    ++ I+ G  H+ ALT +G V+ +G G  G+L  G N
Sbjct: 230 GQLGLNDEYDKSHPTLCKSLRNQKVMYISCGEDHTVALTKEGGVFSFGAGGFGQL--GHN 287

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQ 328
              ++++P++V  L G  I QV+CG  H+VA +   G +++FG G  G+LG G       
Sbjct: 288 STQNEILPKRVMELMGSVISQVACGRRHTVAFSPSSGKMYAFGSGGSGQLGLGDTSARNS 347

Query: 329 PMEV-PINIPAP-RNAGDGVDR---RWIAKLVACGGRHTLAI 365
           P  +   N P+  R     +D     ++ K +  GG H L +
Sbjct: 348 PFPILSPNFPSTGRRLSQVMDHDGSLYLVKHLYSGGDHCLLL 389



 Score = 41.2 bits (95), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 17/112 (15%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------ 57
           + ++  WG    GQLG+ +  ++    + K+L   KV  +  G  +++A+  +G      
Sbjct: 218 SRAVFGWGKNSFGQLGLNDEYDKSHPTLCKSLRNQKVMYISCGEDHTVALTKEGGVFSFG 277

Query: 58  ----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAW 98
                      T+ E +P +V  L  + I Q A G  H +A     G+ YA+
Sbjct: 278 AGGFGQLGHNSTQNEILPKRVMELMGSVISQVACGRRHTVAFSPSSGKMYAF 329


>gi|336088622|ref|NP_001229506.1| secretion regulating guanine nucleotide exchange factor [Apis
           mellifera]
          Length = 381

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 183/399 (45%), Gaps = 59/399 (14%)

Query: 4   TTSIIAWGSGEDGQLGIG-NNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDG- 57
           + S+I+WG+   GQLG G  +EE    C V     +LEP K++ ++ G+ ++L + D G 
Sbjct: 2   SYSLISWGANSHGQLGQGFRSEECVLPCEVDLSKCSLEPQKIKKIIGGAGHTLILDDYGC 61

Query: 58  --------------KTKTENIPSQV--NALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGG 100
                          TK + +  Q     L N  IV  A G W C  A+  +G  + WG 
Sbjct: 62  VYSCGWNNKGQVGFSTKEDILLFQKLKGKLKNKVIVDIACG-WDCSAALTIEGTLFVWGS 120

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG- 159
           N +GQ G+ P     T      ++VI ++      +++++ G  H+V++T +  V+  G 
Sbjct: 121 NSFGQLGKHPNDLQWTHEPF--EVVIDRK------IKRISIGLRHTVLITEDYKVFVAGT 172

Query: 160 ---------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                           +  + +   V  L  ++ I+ G  H +A+ +DG  +A+G+N+YG
Sbjct: 173 DNKGQLGLNSTKNDKSLNAVYIFTEVLTLSNIEHISCGQHHTIAVAKDGNFYAFGDNKYG 232

Query: 211 QLGTG-DTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           QLG   D  P++  PI +         ++ +G W    +  +  ++GWGR  +G+LG   
Sbjct: 233 QLGINTDIFPKTLIPIKLSDFQFKLPFNLYSG-WSHVIVLKNNYIFGWGRNTYGQLGIAQ 291

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
            +KSS    + + L     I QVS G  H+VALT +G I  +G  +HG  G G       
Sbjct: 292 LEKSSTW--KAIQLENIPKIYQVSVGSEHNVALTENGKILCWGWNEHGNCGNGHTKDVKF 349

Query: 329 PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           P ++ ++              ++  LV  G  H+ A+++
Sbjct: 350 PEQLLLS------------YNYVGILVGSGAAHSFAVIK 376


>gi|348676412|gb|EGZ16230.1| hypothetical protein PHYSODRAFT_445559 [Phytophthora sojae]
          Length = 2434

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 168/354 (47%), Gaps = 54/354 (15%)

Query: 41  RSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           R V +  +NS      G T +     ++ +L   +I+Q   G  H +A+   G+    G 
Sbjct: 433 REVWSCGQNSYGELGHGDTASRKSFERIESLQQKEIIQIGAGNEHTIALTVDGKVLTCGY 492

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRC-APKL---IVRQVAA--GGTHSVVLTREGH 154
           N+ GQCG+       T R       +   C  PK+    + QV A  G  H++++T +G 
Sbjct: 493 NDNGQCGQ-----GGTAR-------VSHLCEMPKMGDNAISQVHAYNGCEHTILVTMDGR 540

Query: 155 VWTWGQPWP----PGDIKQISVPVRVQGLEQ--VKLIAVGAFHN-LALQEDGA----LWA 203
             T G  +      G+    SVP  V+ LE   V+L++   +H  +A +EDG+    L+ 
Sbjct: 541 AATCGYNYRGQLGHGNTASESVPKIVRSLENRIVRLVSCSYYHTVMACEEDGSGQQYLYT 600

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           +G N+YGQLG  D+  R  P  V+ +    +V +A G +H+  +T  G+ + +G+ ++G+
Sbjct: 601 FGRNDYGQLGHNDSIDRKVPQHVEAMGDQHVVSVACGQYHTMVVTATGKAFAFGKNDYGQ 660

Query: 264 LGFGDNDKSSKMVPQKVNL-LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           LG   +   +++VP +V   L   + +++ CG  H++ L    H+F+FGR D+G+LG GR
Sbjct: 661 LGI--DSMENQLVPVQVRAGLEKHECLEIRCGYYHTIVLCSGAHLFAFGRNDYGQLGLGR 718

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV-----------ACGGRHTLAI 365
                       N  +  N      R   A+L+           ACG  HT+A+
Sbjct: 719 A-----------NASSTANLQLQQQRFSYARLIEELEGKDIVRFACGCYHTVAV 761



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 192/407 (47%), Gaps = 80/407 (19%)

Query: 10  WGSGED--GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----EN 63
           W  G++  G+LG G+   R+    +++L+  ++  + AG+ +++A+  DGK  T    +N
Sbjct: 436 WSCGQNSYGELGHGDTASRKSFERIESLQQKEIIQIGAGNEHTIALTVDGKVLTCGYNDN 495

Query: 64  ----------------IPSQ-VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           +P    NA+S    V A  G  H + V   GRA   G N  GQ 
Sbjct: 496 GQCGQGGTARVSHLCEMPKMGDNAISQ---VHAYNGCEHTILVTMDGRAATCGYNYRGQL 552

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG-----HVWTWGQP 161
           G      +   +I+R    +  R     IVR V+    H+V+   E      +++T+G+ 
Sbjct: 553 GHGNTASESVPKIVRS---LENR-----IVRLVSCSYYHTVMACEEDGSGQQYLYTFGR- 603

Query: 162 WPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
               D  Q+         VP  V+ +  + V  +A G +H + +   G  +A+G N+YGQ
Sbjct: 604 ---NDYGQLGHNDSIDRKVPQHVEAMGDQHVVSVACGQYHTMVVTATGKAFAFGKNDYGQ 660

Query: 212 LGTGDTQPRSQPIPVQGLSGLT---LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           LG    +  +Q +PVQ  +GL     ++I  G +H+  L     ++ +GR ++G+LG G 
Sbjct: 661 LGIDSME--NQLVPVQVRAGLEKHECLEIRCGYYHTIVLCSGAHLFAFGRNDYGQLGLGR 718

Query: 269 NDKSS----KMVPQKVNL------LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            + SS    ++  Q+ +       L G+DIV+ +CG  H+VA++ +G ++ FGR +HG+L
Sbjct: 719 ANASSTANLQLQQQRFSYARLIEELEGKDIVRFACGCYHTVAVSDNGVMYVFGRNNHGQL 778

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G G   T  +    PI+        D V +R    LVA G  HT+ +
Sbjct: 779 GTGD--TNERVYPFPID--------DFVGKR--VALVAAGFYHTVVL 813



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 128/300 (42%), Gaps = 61/300 (20%)

Query: 11  GSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD-------------- 56
           G    GQLG GN        +V++LE   VR V     +++  C++              
Sbjct: 545 GYNYRGQLGHGNTASESVPKIVRSLENRIVRLVSCSYYHTVMACEEDGSGQQYLYTFGRN 604

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    +    +P  V A+ +  +V  A G +H + V   G+A+A+G N+YGQ G +
Sbjct: 605 DYGQLGHNDSIDRKVPQHVEAMGDQHVVSVACGQYHTMVVTATGKAFAFGKNDYGQLGID 664

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
              ++    +  R  +    C       ++  G  H++VL    H++ +G+     D  Q
Sbjct: 665 -SMENQLVPVQVRAGLEKHECL------EIRCGYYHTIVLCSGAHLFAFGR----NDYGQ 713

Query: 170 I-----------SVPVRVQGLEQVKLI-----------AVGAFHNLALQEDGALWAWGNN 207
           +           ++ ++ Q     +LI           A G +H +A+ ++G ++ +G N
Sbjct: 714 LGLGRANASSTANLQLQQQRFSYARLIEELEGKDIVRFACGCYHTVAVSDNGVMYVFGRN 773

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT-------DDGEVYGWGRGE 260
            +GQLGTGDT  R  P P+    G  +  +AAG +H+  LT       +D +  G  +GE
Sbjct: 774 NHGQLGTGDTNERVYPFPIDDFVGKRVALVAAGFYHTVVLTGGKEDEKNDQDAAGNDKGE 833



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 134/293 (45%), Gaps = 31/293 (10%)

Query: 90  DDQGRAYAW--GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           +++G    W  G N YG+ G       DT    R+     +    K I+ Q+ AG  H++
Sbjct: 428 EEEGDREVWSCGQNSYGELGH-----GDTAS--RKSFERIESLQQKEII-QIGAGNEHTI 479

Query: 148 VLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAF----HNLALQEDG 199
            LT +G V T G         G   ++S    +  +    +  V A+    H + +  DG
Sbjct: 480 ALTVDGKVLTCGYNDNGQCGQGGTARVSHLCEMPKMGDNAISQVHAYNGCEHTILVTMDG 539

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST-ALTDDGE----VY 254
                G N  GQLG G+T   S P  V+ L    +  ++   +H+  A  +DG     +Y
Sbjct: 540 RAATCGYNYRGQLGHGNTASESVPKIVRSLENRIVRLVSCSYYHTVMACEEDGSGQQYLY 599

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +GR ++G+LG   ND   + VPQ V  +  + +V V+CG  H++ +T  G  F+FG+ D
Sbjct: 600 TFGRNDYGQLG--HNDSIDRKVPQHVEAMGDQHVVSVACGQYHTMVVTATGKAFAFGKND 657

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR--WIAKLVACGGRHTLAI 365
           +G+LG    + + +   VP+ + A     + ++ R  +   +V C G H  A 
Sbjct: 658 YGQLG----IDSMENQLVPVQVRAGLEKHECLEIRCGYYHTIVLCSGAHLFAF 706



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 16/172 (9%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           D  +W+ G N YG+LG GDT  R     ++ L    ++ I AG  H+ ALT DG+V   G
Sbjct: 432 DREVWSCGQNSYGELGHGDTASRKSFERIESLQQKEIIQIGAGNEHTIALTVDGKVLTCG 491

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGDH 315
             ++G+ G G   + S +   ++  +    I QV    G  H++ +T DG   + G    
Sbjct: 492 YNDNGQCGQGGTARVSHLC--EMPKMGDNAISQVHAYNGCEHTILVTMDGRAATCGYNYR 549

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+LG+G   +   P  V             ++ R I +LV+C   HT+   E
Sbjct: 550 GQLGHGNTASESVPKIV-----------RSLENR-IVRLVSCSYYHTVMACE 589



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 37/179 (20%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKA-LEPYKVRSVVAGSRNSLAIC----- 54
           + +T    A+G  + GQLGI + E +     V+A LE ++   +  G  +++ +C     
Sbjct: 644 VTATGKAFAFGKNDYGQLGIDSMENQLVPVQVRAGLEKHECLEIRCGYYHTIVLCSGAHL 703

Query: 55  ------DDGK--------TKTENIPSQ---------VNALSNTKIVQAAIGGWHCLAVDD 91
                 D G+        + T N+  Q         +  L    IV+ A G +H +AV D
Sbjct: 704 FAFGRNDYGQLGLGRANASSTANLQLQQQRFSYARLIEELEGKDIVRFACGCYHTVAVSD 763

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
            G  Y +G N +GQ G        TG    R    P        V  VAAG  H+VVLT
Sbjct: 764 NGVMYVFGRNNHGQLG--------TGDTNERVYPFPIDDFVGKRVALVAAGFYHTVVLT 814


>gi|428177897|gb|EKX46775.1| hypothetical protein GUITHDRAFT_40435, partial [Guillardia theta
           CCMP2712]
          Length = 312

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 27/302 (8%)

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC 130
           L+   +VQ A GG H L + D GR  A G N+  Q G+  E ++      +   +  +R 
Sbjct: 3   LAGHHVVQVAAGGDHTLFLTDAGRVLACGRNDCYQLGDGYEGREAGPEPQQVSTLRWKR- 61

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKL 184
                V ++A G  H++V   +G V++WG         G+ K +  P +V GL  E+   
Sbjct: 62  -----VVEMACGDAHNLVRCLDGSVYSWGLGSSGRLGLGNFKSVPQPCKVSGLGEERCVS 116

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWH 243
           +A G +H+ A+ E G L+AWGN   GQLGTG  +   +P+ V+   +G     +  G +H
Sbjct: 117 VAAGYYHSFAVMEGGKLFAWGNGTCGQLGTGKFESCCEPVQVEEPGNGQRWRAVRGGEYH 176

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S  +TD G ++ WG    G+LG GD ++  +  P+ ++ L G  I   SCG   +VA++ 
Sbjct: 177 SLGMTDVGSLWSWGLNNDGQLGHGDEERCGR--PKGISELVGTKISCFSCGPNFNVAISN 234

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
              +FS+G   +G+LG+G KV   + +E  +     R+   G     +   V+CGGRH L
Sbjct: 235 GSQVFSWGNNRYGQLGHGDKV---EQIEETL-----RSGSHGP----LVLSVSCGGRHVL 282

Query: 364 AI 365
            +
Sbjct: 283 GL 284



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 27/300 (9%)

Query: 43  VVAGSRNSLAICDDGKTKTEN--IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           V+A  RN      DG    E    P QV+ L   ++V+ A G  H L     G  Y+WG 
Sbjct: 27  VLACGRNDCYQLGDGYEGREAGPEPQQVSTLRWKRVVEMACGDAHNLVRCLDGSVYSWGL 86

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ----VAAGGTHSVVLTREGHVW 156
              G+ G            L     +PQ C    +  +    VAAG  HS  +   G ++
Sbjct: 87  GSSGRLG------------LGNFKSVPQPCKVSGLGEERCVSVAAGYYHSFAVMEGGKLF 134

Query: 157 TWGQ----PWPPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
            WG         G  +    PV+V+     ++ + +  G +H+L + + G+LW+WG N  
Sbjct: 135 AWGNGTCGQLGTGKFESCCEPVQVEEPGNGQRWRAVRGGEYHSLGMTDVGSLWSWGLNND 194

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG GD +   +P  +  L G  +   + G   + A+++  +V+ WG   +G+LG G  
Sbjct: 195 GQLGHGDEERCGRPKGISELVGTKISCFSCGPNFNVAISNGSQVFSWGNNRYGQLGHG-- 252

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           DK  ++     +   G  ++ VSCGG H + L R G I+++G  + G LG G  +    P
Sbjct: 253 DKVEQIEETLRSGSHGPLVLSVSCGGRHVLGLDRKGRIWAWGCNESGCLGIGDNIPRLAP 312



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 103/241 (42%), Gaps = 31/241 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           S+ +WG G  G+LG+GN +     C V  L   +  SV AG  +S A+ + GK       
Sbjct: 80  SVYSWGLGSSGRLGLGNFKSVPQPCKVSGLGEERCVSVAAGYYHSFAVMEGGKLFAWGNG 139

Query: 60  --------KTENI--PSQVNALSNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQCGE 108
                   K E+   P QV    N +  +A  GG +H L + D G  ++WG N  GQ G 
Sbjct: 140 TCGQLGTGKFESCCEPVQVEEPGNGQRWRAVRGGEYHSLGMTDVGSLWSWGLNNDGQLGH 199

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
             E +    + +   +     C         + G   +V ++    V++WG     Q   
Sbjct: 200 GDEERCGRPKGISELVGTKISC--------FSCGPNFNVAISNGSQVFSWGNNRYGQLGH 251

Query: 164 PGDIKQISVPVRVQGLEQVKL-IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              ++QI   +R      + L ++ G  H L L   G +WAWG NE G LG GD  PR  
Sbjct: 252 GDKVEQIEETLRSGSHGPLVLSVSCGGRHVLGLDRKGRIWAWGCNESGCLGIGDNIPRLA 311

Query: 223 P 223
           P
Sbjct: 312 P 312



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 12/139 (8%)

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L+G  +V +AAGG H+  LTD G V   GR +  +LG G   + +   PQ+V+ L  + +
Sbjct: 3   LAGHHVVQVAAGGDHTLFLTDAGRVLACGRNDCYQLGDGYEGREAGPEPQQVSTLRWKRV 62

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           V+++CG  H++    DG ++S+G G  GRLG G   +  QP +V         +G G +R
Sbjct: 63  VEMACGDAHNLVRCLDGSVYSWGLGSSGRLGLGNFKSVPQPCKV---------SGLGEER 113

Query: 349 RWIAKLVACGGRHTLAIVE 367
                 VA G  H+ A++E
Sbjct: 114 ---CVSVAAGYYHSFAVME 129



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 44/159 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           M    S+ +WG   DGQLG G+ E                             C      
Sbjct: 180 MTDVGSLWSWGLNNDGQLGHGDEER----------------------------CGR---- 207

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P  ++ L  TKI   + G    +A+ +  + ++WG N YGQ G   ++ +     L
Sbjct: 208 ----PKGISELVGTKISCFSCGPNFNVAISNGSQVFSWGNNRYGQLG-HGDKVEQIEETL 262

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
           R     P       +V  V+ GG H + L R+G +W WG
Sbjct: 263 RSGSHGP-------LVLSVSCGGRHVLGLDRKGRIWAWG 294


>gi|392944589|ref|ZP_10310231.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Frankia
           sp. QA3]
 gi|392287883|gb|EIV93907.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Frankia
           sp. QA3]
          Length = 408

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 138/289 (47%), Gaps = 19/289 (6%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSN-TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           N L    +G T    +P +V  L+  T++V  A G +   AV   G A+AWG N YGQ G
Sbjct: 54  NGLGHLGNGTTTNSAVPVRVTGLTGLTQVVGIAAGRYAGYAVHRDGTAWAWGYNAYGQLG 113

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                    G I   +  +P R +    V  +A G  +   L ++G VW+WG        
Sbjct: 114 N--------GTIT--NSAVPVRVSGLTRVVALAGGSVNGYALRQDGTVWSWGYNNYGQLG 163

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            G      VPVRV GL++V  IA G     AL++DG +WAWG N+ GQLG G T     P
Sbjct: 164 NGTTTNSRVPVRVVGLDRVIAIASGGTTGYALRQDGTVWAWGYNDEGQLGNGTTANSPLP 223

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V GL G+    IA G     AL  DG V+ WG   HG+LG G     S  +P  +  L
Sbjct: 224 VRVLGLHGVR--AIAGGQETGYALRRDGTVWAWGHNNHGQLGNG--TVVSSTIPVAIRNL 279

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +    +  S  G    AL  DG  +++G  + G+LG G   T+  P++V
Sbjct: 280 SEVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTDDTSLVPVQV 328



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 131/278 (47%), Gaps = 19/278 (6%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+     +G      +P +V+ L  T++V  A G  +  A+   G  ++WG N YGQ G 
Sbjct: 107 NAYGQLGNGTITNSAVPVRVSGL--TRVVALAGGSVNGYALRQDGTVWSWGYNNYGQLGN 164

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                            +P R      V  +A+GGT    L ++G VW WG         
Sbjct: 165 GTTTNSR----------VPVRVVGLDRVIAIASGGTTGYALRQDGTVWAWGYNDEGQLGN 214

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G      +PVRV GL  V+ IA G     AL+ DG +WAWG+N +GQLG G     + P+
Sbjct: 215 GTTANSPLPVRVLGLHGVRAIAGGQETGYALRRDGTVWAWGHNNHGQLGNGTVVSSTIPV 274

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            ++ LS +T +  ++ G    AL  DG  + WG    G+LG G +D S  +VP +V    
Sbjct: 275 AIRNLSEVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTDDTS--LVPVQVTGST 332

Query: 285 G-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G   +  +S G     A+ RDG ++++G    G+LG G
Sbjct: 333 GLVGVTAISAGSFSGYAVRRDGTVWAWGSNFFGQLGNG 370



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 156 WTWGQP----WPPGDIKQISVPVRVQGLE---QVKLIAVGAFHNLALQEDGALWAWGNNE 208
           W+WG         G     +VPVRV GL    QV  IA G +   A+  DG  WAWG N 
Sbjct: 49  WSWGYNGLGHLGNGTTTNSAVPVRVTGLTGLTQVVGIAAGRYAGYAVHRDGTAWAWGYNA 108

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           YGQLG G     + P+ V GL+   +V +A G  +  AL  DG V+ WG   +G+LG G 
Sbjct: 109 YGQLGNGTITNSAVPVRVSGLT--RVVALAGGSVNGYALRQDGTVWSWGYNNYGQLGNGT 166

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
              S   VP +V  L  + ++ ++ GGT   AL +DG ++++G  D G+LG G    +  
Sbjct: 167 TTNS--RVPVRVVGL--DRVIAIASGGTTGYALRQDGTVWAWGYNDEGQLGNGTTANSPL 222

Query: 329 PMEV 332
           P+ V
Sbjct: 223 PVRV 226



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 106/260 (40%), Gaps = 32/260 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ +WG    GQLG G          V  L+  +V ++ +G     A+  DG        
Sbjct: 150 TVWSWGYNNYGQLGNGTTTNSRVPVRVVGLD--RVIAIASGGTTGYALRQDGTVWAWGYN 207

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                    T N P  V  L    +   A G     A+   G  +AWG N +GQ G    
Sbjct: 208 DEGQLGNGTTANSPLPVRVLGLHGVRAIAGGQETGYALRRDGTVWAWGHNNHGQLGN--- 264

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                G ++   I +  R   ++     ++ G     L  +G  W WG         G  
Sbjct: 265 -----GTVVSSTIPVAIRNLSEVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNGTD 319

Query: 168 KQISVPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               VPV+V G   L  V  I+ G+F   A++ DG +WAWG+N +GQLG G T P     
Sbjct: 320 DTSLVPVQVTGSTGLVGVTAISAGSFSGYAVRRDGTVWAWGSNFFGQLGNGTTTPSFSLR 379

Query: 225 PVQGLSGLTLVDIAAGGWHS 244
           PV+ +SG+   +  AGG  S
Sbjct: 380 PVR-VSGVARAEAIAGGGFS 398



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 87/219 (39%), Gaps = 45/219 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ AWG  ++GQLG G          V+ L  + VR++  G     A+  DG        
Sbjct: 200 TVWAWGYNDEGQLGNGTTANSP--LPVRVLGLHGVRAIAGGQETGYALRRDGTVWAWGHN 257

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                      +  IP  +  LS    + A+  G    A+   G A+AWG N  GQ G  
Sbjct: 258 NHGQLGNGTVVSSTIPVAIRNLSEVTAIAASSEGNSGYALRGDGTAWAWGLNNTGQLGNG 317

Query: 110 PERKDDTGRILRRDIVIPQRC--APKLI-VRQVAAGGTHSVVLTREGHVWTWGQPW---- 162
               DDT        ++P +   +  L+ V  ++AG      + R+G VW WG  +    
Sbjct: 318 ---TDDTS-------LVPVQVTGSTGLVGVTAISAGSFSGYAVRRDGTVWAWGSNFFGQL 367

Query: 163 ------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
                 P   ++    PVRV G+ + + IA G F    L
Sbjct: 368 GNGTTTPSFSLR----PVRVSGVARAEAIAGGGFSGYTL 402


>gi|168046566|ref|XP_001775744.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672896|gb|EDQ59427.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 441

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 167/369 (45%), Gaps = 77/369 (20%)

Query: 60  KTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQ-CGEEPERK---- 113
           K + +P      +++ IV AA GGW HC AV   G  Y WG +E  +  G++  R     
Sbjct: 85  KQQEVPELYPLPTDSPIVHAA-GGWAHCAAVTGDGEVYTWGWSECTKPTGKQTLRNLACK 143

Query: 114 ----DDTGRILRRDIVIPQRC-------------APKLIVR--------QVAAGGTHSVV 148
               D    +++R  VI                 AP  +V+         VAAGG H++ 
Sbjct: 144 TTGSDGAEEVIKRRKVITNSAEGQSPEASEENAFAPPCLVKLDPGIRISSVAAGGRHTLA 203

Query: 149 L--------TREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQ-------------- 181
           L        T  G VW W     GQ      I+ +S P  +                   
Sbjct: 204 LSDNTNHMETDVGQVWGWGYGGEGQLGLGSCIRIVSFPQHIPCFNMTDTGNARSGVPIPG 263

Query: 182 --VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
             +K IA G  H+  + + GA+  +G   YGQ+G G T+    P  V  L GL++V IAA
Sbjct: 264 SYIKAIACGGRHSAVITDTGAVLTFGWGLYGQIGQGSTEDELSPSHVSTLQGLSIVGIAA 323

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN--LLAGEDIVQVSCGGTH 297
           G WH+  +T+ G+VY +G  + G+LG G N+  +++ P+ ++  LL  E  V V+CG  H
Sbjct: 324 GLWHTLCITNTGDVYSFGGNQFGQLGVGGNN--AELSPRLIDAPLLGDELSVAVACGARH 381

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           SV LT  G IF++G   +G+LG G       PM+V +N        DG      A  +AC
Sbjct: 382 SVVLTGSGKIFAWGWNKYGQLGLGDCNNRDLPMQVTMN--------DGGR----AASIAC 429

Query: 358 GGRHTLAIV 366
           G  HTLA V
Sbjct: 430 GWWHTLASV 438



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 135/301 (44%), Gaps = 69/301 (22%)

Query: 30  CVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAV 89
           C+VK     ++ SV AG R++LA+ D                 NT  ++           
Sbjct: 181 CLVKLDPGIRISSVAAGGRHTLALSD-----------------NTNHMET---------- 213

Query: 90  DDQGRAYAWGGNEYGQCG--------EEPER-----KDDTGRILRRDIVIPQRCAPKLIV 136
            D G+ + WG    GQ G          P+        DTG   R  + IP        +
Sbjct: 214 -DVGQVWGWGYGGEGQLGLGSCIRIVSFPQHIPCFNMTDTGNA-RSGVPIPGS-----YI 266

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPW-PPGDIKQISV-----PVRVQGLEQVKL--IAVG 188
           + +A GG HS V+T  G V T+G  W   G I Q S      P  V  L+ + +  IA G
Sbjct: 267 KAIACGGRHSAVITDTGAVLTFG--WGLYGQIGQGSTEDELSPSHVSTLQGLSIVGIAAG 324

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTG----DTQPRSQPIPVQG--LSGLTLVDIAAGGW 242
            +H L +   G ++++G N++GQLG G    +  PR    P+ G  LS    V +A G  
Sbjct: 325 LWHTLCITNTGDVYSFGGNQFGQLGVGGNNAELSPRLIDAPLLGDELS----VAVACGAR 380

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           HS  LT  G+++ WG  ++G+LG GD +  ++ +P +V +  G     ++CG  H++A  
Sbjct: 381 HSVVLTGSGKIFAWGWNKYGQLGLGDCN--NRDLPMQVTMNDGGRAASIACGWWHTLASV 438

Query: 303 R 303
           R
Sbjct: 439 R 439



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 100/268 (37%), Gaps = 83/268 (30%)

Query: 10  WGSGEDGQLGIGN-----NEEREWVCVVKA----------LEPYKVRSVVAGSRNSLAIC 54
           WG G +GQLG+G+     +  +   C              +    ++++  G R+S  I 
Sbjct: 221 WGYGGEGQLGLGSCIRIVSFPQHIPCFNMTDTGNARSGVPIPGSYIKAIACGGRHSAVIT 280

Query: 55  D----------------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           D                 G T+ E  PS V+ L    IV  A G WH L + + G  Y++
Sbjct: 281 DTGAVLTFGWGLYGQIGQGSTEDELSPSHVSTLQGLSIVGIAAGLWHTLCITNTGDVYSF 340

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           GGN++GQ G      + + R++   ++  +      +   VA G  HSVVLT  G ++ W
Sbjct: 341 GGNQFGQLGVGGNNAELSPRLIDAPLLGDE------LSVAVACGARHSVVLTGSGKIFAW 394

Query: 159 GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
           G  W                                            N+YGQLG GD  
Sbjct: 395 G--W--------------------------------------------NKYGQLGLGDCN 408

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            R  P+ V    G     IA G WH+ A
Sbjct: 409 NRDLPMQVTMNDGGRAASIACGWWHTLA 436



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 102/255 (40%), Gaps = 60/255 (23%)

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE---YGQLGTGDTQ--PRS 221
           ++   VPV V       +   G    +A+ E G L  WG+     +  L +G  Q  P  
Sbjct: 33  LQPTPVPVSVLNDPLKTVCNGGCGFGIAISESGNLNTWGSTTDHGHCYLISGKQQEVPEL 92

Query: 222 QPIPVQGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGE-----------------HGR 263
            P+P       + +  AAGGW H  A+T DGEVY WG  E                  G 
Sbjct: 93  YPLPTD-----SPIVHAAGGWAHCAAVTGDGEVYTWGWSECTKPTGKQTLRNLACKTTGS 147

Query: 264 LGFGDNDKSSKMV-------------------PQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            G  +  K  K++                   P  V L  G  I  V+ GG H++AL+ +
Sbjct: 148 DGAEEVIKRRKVITNSAEGQSPEASEENAFAPPCLVKLDPGIRISSVAAGGRHTLALSDN 207

Query: 305 --------GHIFSFGRGDHGRLGYGRKV-TTGQPMEVP-INIPAPRNAGDGVDR--RWIA 352
                   G ++ +G G  G+LG G  +     P  +P  N+    NA  GV     +I 
Sbjct: 208 TNHMETDVGQVWGWGYGGEGQLGLGSCIRIVSFPQHIPCFNMTDTGNARSGVPIPGSYI- 266

Query: 353 KLVACGGRHTLAIVE 367
           K +ACGGRH+  I +
Sbjct: 267 KAIACGGRHSAVITD 281


>gi|357613847|gb|EHJ68745.1| hypothetical protein KGM_02265 [Danaus plexippus]
          Length = 1039

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 140/316 (44%), Gaps = 57/316 (18%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP 132
           ++ I Q + G +H L + + G  Y  G NE GQ G +    D T  +L       + C  
Sbjct: 34  SSHIQQISAGEFHTLYLSNNGHLYTCGSNEVGQLGRQTNSADGTSPVLVDTF---KGCT- 89

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------------PPGDIKQISVPVRVQG 178
              +  +A G  HS+ L   G  ++WG                  P  IK ++    +Q 
Sbjct: 90  ---LSTIACGLQHSMALDEWGQPFSWGSDSMGQLGSNLGSHAQDKPKIIKTLATKNVIQ- 145

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDI 237
                 +A G++H + L  +G L+AWG N YGQ G G+ +   + P  +  + G+ +  I
Sbjct: 146 ------VACGSYHTVVLTNNGDLYAWGANSYGQCGLGNRSNKETTPQALSSILGIPIALI 199

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A G  H+ AL+  G V+GWG+  HG+LG    D+ S+  P  +  L    +  +SCG   
Sbjct: 200 ACGSNHTFALSQSGAVFGWGKNSHGQLGL--QDRESRCYPTHLKTLRNVKVCHISCGEDF 257

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL--- 354
           +  LT DG +F+ G G++G+ G+G                   N  D +  R + +L   
Sbjct: 258 TAFLTLDGGVFTCGAGEYGQTGHG-------------------NTKDELVPRKVMELMGS 298

Query: 355 ----VACGGRHTLAIV 366
               VACG RH L  V
Sbjct: 299 TVTQVACGRRHMLCRV 314



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 128/272 (47%), Gaps = 37/272 (13%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP-ERKDDTGRILRRD 123
           P  V+      +   A G  H +A+D+ G+ ++WG +  GQ G        D  +I++  
Sbjct: 79  PVLVDTFKGCTLSTIACGLQHSMALDEWGQPFSWGSDSMGQLGSNLGSHAQDKPKIIKT- 137

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------------QPWPPGDIK 168
                  A K ++ QVA G  H+VVLT  G ++ WG               +  P     
Sbjct: 138 ------LATKNVI-QVACGSYHTVVLTNNGDLYAWGANSYGQCGLGNRSNKETTPQALSS 190

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            + +P+         LIA G+ H  AL + GA++ WG N +GQLG  D + R  P  ++ 
Sbjct: 191 ILGIPI--------ALIACGSNHTFALSQSGAVFGWGKNSHGQLGLQDRESRCYPTHLKT 242

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L  + +  I+ G   +  LT DG V+  G GE+G+ G G+     ++VP+KV  L G  +
Sbjct: 243 LRNVKVCHISCGEDFTAFLTLDGGVFTCGAGEYGQTGHGNT--KDELVPRKVMELMGSTV 300

Query: 289 VQVSCGGTHSVALTRDGH-IFSFGRGDHGRLG 319
            QV+CG  H   L R G  I + G G  G+LG
Sbjct: 301 TQVACGRRH--MLCRVGERILACGYGARGQLG 330



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 21/208 (10%)

Query: 164 PGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG-TGDTQPR 220
           PG++  +  P   +  E   ++ I+ G FH L L  +G L+  G+NE GQLG   ++   
Sbjct: 17  PGNLDLVIKPTLSKWKESSHIQQISAGEFHTLYLSNNGHLYTCGSNEVGQLGRQTNSADG 76

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           + P+ V    G TL  IA G  HS AL + G+ + WG    G+LG  +    ++  P+ +
Sbjct: 77  TSPVLVDTFKGCTLSTIACGLQHSMALDEWGQPFSWGSDSMGQLG-SNLGSHAQDKPKII 135

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG---RKVTTGQPMEVPINIP 337
             LA ++++QV+CG  H+V LT +G ++++G   +G+ G G    K TT Q +   + IP
Sbjct: 136 KTLATKNVIQVACGSYHTVVLTNNGDLYAWGANSYGQCGLGNRSNKETTPQALSSILGIP 195

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAI 365
                           L+ACG  HT A+
Sbjct: 196 --------------IALIACGSNHTFAL 209



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 116/335 (34%), Gaps = 111/335 (33%)

Query: 8   IAWGSGEDGQLG--IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
            +WGS   GQLG  +G++ + +   ++K L    V  V  GS +++ + ++G        
Sbjct: 110 FSWGSDSMGQLGSNLGSHAQDKPK-IIKTLATKNVIQVACGSYHTVVLTNNGDLYAWGAN 168

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                    ++  E  P  ++++    I   A G  H  A+   G  + WG N +GQ G 
Sbjct: 169 SYGQCGLGNRSNKETTPQALSSILGIPIALIACGSNHTFALSQSGAVFGWGKNSHGQLGL 228

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP 161
           +                   RC P  +       V  ++ G   +  LT +G V+T G  
Sbjct: 229 QDRES---------------RCYPTHLKTLRNVKVCHISCGEDFTAFLTLDGGVFTCGA- 272

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                                                         EYGQ G G+T+   
Sbjct: 273 ---------------------------------------------GEYGQTGHGNTKDEL 287

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLG--------------F 266
            P  V  L G T+  +A G  H   L   GE +   G G  G+LG              F
Sbjct: 288 VPRKVMELMGSTVTQVACGRRH--MLCRVGERILACGYGARGQLGCPHMAFALVPTPVTF 345

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             ND+S    P    + +G   V+V  GG HS  +
Sbjct: 346 TPNDES----PFSPEIFSGP--VKVFAGGDHSFLI 374



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 32/233 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           ++ + ++  WG    GQLG+ + E R +   +K L   KV  +  G   +  +  D    
Sbjct: 209 LSQSGAVFGWGKNSHGQLGLQDRESRCYPTHLKTLRNVKVCHISCGEDFTAFLTLDGGVF 268

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                       G TK E +P +V  L  + + Q A G  H L  V ++  A  +G    
Sbjct: 269 TCGAGEYGQTGHGNTKDELVPRKVMELMGSTVTQVACGRRHMLCRVGERILACGYGARGQ 328

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV--RQVAAGGTHSVVLTREGHVWTWGQP 161
             C         T      +   P   +P++     +V AGG HS ++            
Sbjct: 329 LGCPHMAFALVPTPVTFTPNDESP--FSPEIFSGPVKVFAGGDHSFLILNSEK------- 379

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLG 213
             P D +      ++  L   KL+    F +N  + +D  L A+    +G LG
Sbjct: 380 -SPADSRVADASKQILSLSNAKLVPCLVFKNNDVVSQD--LMAYLETVFGSLG 429



 Score = 38.1 bits (87), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 253 VYGWGRGEHGRLGF---GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           ++ WG   H  L     G+ D   K  P          I Q+S G  H++ L+ +GH+++
Sbjct: 1   MFCWGNATHHELCIECPGNLDLVIK--PTLSKWKESSHIQQISAGEFHTLYLSNNGHLYT 58

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            G  + G+LG       G         P   +   G     IA    CG +H++A+ EW
Sbjct: 59  CGSNEVGQLGRQTNSADGTS-------PVLVDTFKGCTLSTIA----CGLQHSMALDEW 106


>gi|444729790|gb|ELW70194.1| putative E3 ubiquitin-protein ligase HERC6 [Tupaia chinensis]
          Length = 1378

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/242 (33%), Positives = 123/242 (50%), Gaps = 24/242 (9%)

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIAV- 187
           L V  V+ G  HS+ +  +G V+ WG         G+ K+ S  P +++ L  +K+I V 
Sbjct: 97  LRVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKERSFTPQKIKALAGIKIIQVS 156

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIAAGGWHST 245
            G +H+LAL EDG +++WG N +GQLG G   P ++ P  V+ L G+ L  +AAGG HS 
Sbjct: 157 CGYYHSLALSEDGQVFSWGKNSHGQLGLGKEVPSQTSPQRVRSLEGIPLAQVAAGGAHSF 216

Query: 246 ALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           AL+  G  +GWG    G+L   G      +  P  V  L    +V +SCG  H+  LT++
Sbjct: 217 ALSLSGTSFGWGSNSAGQLALSGTKAPVQRYKPLSVGALKTLGVVYISCGSEHTAVLTQN 276

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G +++FG    G+LG+  +    Q +E            DG     +   + CG  HTLA
Sbjct: 277 GAVYTFGANSSGQLGHSAEQRGPQCVE----------RIDG-----LVSQIDCGSYHTLA 321

Query: 365 IV 366
            V
Sbjct: 322 YV 323



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 124/262 (47%), Gaps = 27/262 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ--CGEEPERKDDTGRILRR 122
           P Q+ A    ++   + G  H LAV  +GR +AWG    GQ   GE  ER     +I   
Sbjct: 88  PEQIQAFETLRVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEFKERSFTPQKI--- 144

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQ 177
                 +    + + QV+ G  HS+ L+ +G V++W     GQ     ++   + P RV+
Sbjct: 145 ------KALAGIKIIQVSCGYYHSLALSEDGQVFSWGKNSHGQLGLGKEVPSQTSPQRVR 198

Query: 178 GLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP---RSQPIPVQGLSGL 232
            LE + L  +A G  H+ AL   G  + WG+N  GQL    T+    R +P+ V  L  L
Sbjct: 199 SLEGIPLAQVAAGGAHSFALSLSGTSFGWGSNSAGQLALSGTKAPVQRYKPLSVGALKTL 258

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +V I+ G  H+  LT +G VY +G    G+LG     +     PQ V  + G  + Q+ 
Sbjct: 259 GVVYISCGSEHTAVLTQNGAVYTFGANSSGQLGHSAEQRG----PQCVERIDGL-VSQID 313

Query: 293 CGGTHSVA-LTRDGHIFSFGRG 313
           CG  H++A +   G + SFG G
Sbjct: 314 CGSYHTLAYVYTTGQVVSFGHG 335



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 22/185 (11%)

Query: 189  AFHNLALQED-----GALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGG 241
            AFH L L E      G L+AWG N +GQLG G   P S P P  V+ L+G+ LV I+AG 
Sbjct: 898  AFHKLKLDEKKKFLCGELFAWGQNSHGQLGLGRIFP-SSPTPQIVEHLAGVPLVQISAGE 956

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             HS AL+  G VY WG+ + G+LG G  +  SK  P  +  L  + +  ++CGG+H+  L
Sbjct: 957  AHSMALSMTGNVYSWGKNDFGQLGLGHTE--SKDSPSLLRALDSQKVDFLACGGSHTALL 1014

Query: 302  TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
            T+DG +F+FG G +G+LG+       +P  V          G+ V +      +ACG  H
Sbjct: 1015 TQDGLVFTFGAGKYGQLGHSSTRDELRPCLV------TELLGNRVTQ------IACGRWH 1062

Query: 362  TLAIV 366
            TLA V
Sbjct: 1063 TLAYV 1067



 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 18/153 (11%)

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           ++ P S+P  +Q    L +  ++ G  HS A+   G V+ WG G  G+LG G+  K    
Sbjct: 81  ESAPSSKPEQIQAFETLRVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGIGEF-KERSF 139

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV---TTGQPMEV 332
            PQK+  LAG  I+QVSCG  HS+AL+ DG +FS+G+  HG+LG G++V   T+ Q +  
Sbjct: 140 TPQKIKALAGIKIIQVSCGYYHSLALSEDGQVFSWGKNSHGQLGLGKEVPSQTSPQRVRS 199

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              IP  +              VA GG H+ A+
Sbjct: 200 LEGIPLAQ--------------VAAGGAHSFAL 218



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 28/218 (12%)

Query: 153  GHVWTWGQP----------WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGA 200
            G ++ WGQ           +P     QI     V+ L  V L  I+ G  H++AL   G 
Sbjct: 913  GELFAWGQNSHGQLGLGRIFPSSPTPQI-----VEHLAGVPLVQISAGEAHSMALSMTGN 967

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
            +++WG N++GQLG G T+ +  P  ++ L    +  +A GG H+  LT DG V+ +G G+
Sbjct: 968  VYSWGKNDFGQLGLGHTESKDSPSLLRALDSQKVDFLACGGSHTALLTQDGLVFTFGAGK 1027

Query: 261  HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGRGDHGRLG 319
            +G+L  G +    ++ P  V  L G  + Q++CG  H++A   + G +F+FG G +G+L 
Sbjct: 1028 YGQL--GHSSTRDELRPCLVTELLGNRVTQIACGRWHTLAYVSELGKVFAFGSGKNGQL- 1084

Query: 320  YGRKVTTGQP---MEVPINIPAPRNAGDGVDRRWIAKL 354
             G   T  QP   + +   IP    A     +RWIA +
Sbjct: 1085 -GNCGTHNQPNSYVNLRRRIPTLNEA---TVKRWIADV 1118



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 135/316 (42%), Gaps = 72/316 (22%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWG+G +GQLGIG                +K RS                      P 
Sbjct: 118 VFAWGAGSEGQLGIGE---------------FKERSFT--------------------PQ 142

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++ AL+  KI+Q + G +H LA+ + G+ ++WG N +GQ G   E    T          
Sbjct: 143 KIKALAGIKIIQVSCGYYHSLALSEDGQVFSWGKNSHGQLGLGKEVPSQTS--------- 193

Query: 127 PQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK--------QISVPVRV 176
           PQR      + + QVAAGG HS  L+  G  + WG     G +         Q   P+ V
Sbjct: 194 PQRVRSLEGIPLAQVAAGGAHSFALSLSGTSFGWGSN-SAGQLALSGTKAPVQRYKPLSV 252

Query: 177 QGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
             L+   V  I+ G+ H   L ++GA++ +G N  GQLG    Q    P  V+ + GL +
Sbjct: 253 GALKTLGVVYISCGSEHTAVLTQNGAVYTFGANSSGQLGHSAEQ--RGPQCVERIDGL-V 309

Query: 235 VDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN---LLAGEDIVQ 290
             I  G +H+ A +   G+V  +G G         N   S+ V    +   L++ +D+V 
Sbjct: 310 SQIDCGSYHTLAYVYTTGQVVSFGHGP----SCTSNSTHSETVTDNADISCLISADDLVD 365

Query: 291 VSC----GGTHSVALT 302
           +       GTH+  +T
Sbjct: 366 IQVKHIFAGTHANFVT 381



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 41/206 (19%)

Query: 83   GWHCLAVDDQ-----GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-- 135
             +H L +D++     G  +AWG N +GQ G         GRI       P    P+++  
Sbjct: 898  AFHKLKLDEKKKFLCGELFAWGQNSHGQLG--------LGRIF------PSSPTPQIVEH 943

Query: 136  -----VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV--------PVRVQGL--E 180
                 + Q++AG  HS+ L+  G+V++WG+     D  Q+ +        P  ++ L  +
Sbjct: 944  LAGVPLVQISAGEAHSMALSMTGNVYSWGK----NDFGQLGLGHTESKDSPSLLRALDSQ 999

Query: 181  QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            +V  +A G  H   L +DG ++ +G  +YGQLG   T+   +P  V  L G  +  IA G
Sbjct: 1000 KVDFLACGGSHTALLTQDGLVFTFGAGKYGQLGHSSTRDELRPCLVTELLGNRVTQIACG 1059

Query: 241  GWHSTALTDD-GEVYGWGRGEHGRLG 265
             WH+ A   + G+V+ +G G++G+LG
Sbjct: 1060 RWHTLAYVSELGKVFAFGSGKNGQLG 1085



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 13/117 (11%)

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            GE++ WG+  HG+LG G    SS   PQ V  LAG  +VQ+S G  HS+AL+  G+++S+
Sbjct: 913  GELFAWGQNSHGQLGLGRIFPSSP-TPQIVEHLAGVPLVQISAGEAHSMALSMTGNVYSW 971

Query: 311  GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G+ D G+LG G   +   P  +             +D + +   +ACGG HT  + +
Sbjct: 972  GKNDFGQLGLGHTESKDSPSLL-----------RALDSQKV-DFLACGGSHTALLTQ 1016



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 26/198 (13%)

Query: 65   PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
            P  V  L+   +VQ + G  H +A+   G  Y+WG N++GQ G       D+  +LR   
Sbjct: 938  PQIVEHLAGVPLVQISAGEAHSMALSMTGNVYSWGKNDFGQLGLGHTESKDSPSLLR--A 995

Query: 125  VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL 179
            +  Q+      V  +A GG+H+ +LT++G V+T+G     G +   S      P  V  L
Sbjct: 996  LDSQK------VDFLACGGSHTALLTQDGLVFTFGAG-KYGQLGHSSTRDELRPCLVTEL 1048

Query: 180  --EQVKLIAVGAFHNLA-LQEDGALWAWGNNEYGQLGTGDT--QPRS-----QPIPVQGL 229
               +V  IA G +H LA + E G ++A+G+ + GQLG   T  QP S     + IP    
Sbjct: 1049 LGNRVTQIACGRWHTLAYVSELGKVFAFGSGKNGQLGNCGTHNQPNSYVNLRRRIPTLNE 1108

Query: 230  SGLT--LVDIAAGGWHST 245
            + +   + D+    W +T
Sbjct: 1109 ATVKRWIADVGTKQWQNT 1126



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
            ++ T ++ +WG  + GQLG+G+ E ++   +++AL+  KV  +  G  ++  +  DG   
Sbjct: 962  LSMTGNVYSWGKNDFGQLGLGHTESKDSPSLLRALDSQKVDFLACGGSHTALLTQDGLVF 1021

Query: 58   -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                          T+ E  P  V  L   ++ Q A G WH LA V + G+ +A+G  + 
Sbjct: 1022 TFGAGKYGQLGHSSTRDELRPCLVTELLGNRVTQIACGRWHTLAYVSELGKVFAFGSGKN 1081

Query: 104  GQCG 107
            GQ G
Sbjct: 1082 GQLG 1085



 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 26/171 (15%)

Query: 7    IIAWGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------D 55
            + AWG    GQLG+G          +V+ L    +  + AG  +S+A+           +
Sbjct: 915  LFAWGQNSHGQLGLGRIFPSSPTPQIVEHLAGVPLVQISAGEAHSMALSMTGNVYSWGKN 974

Query: 56   D------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
            D      G T++++ PS + AL + K+   A GG H   +   G  + +G  +YGQ G  
Sbjct: 975  DFGQLGLGHTESKDSPSLLRALDSQKVDFLACGGSHTALLTQDGLVFTFGAGKYGQLGHS 1034

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTWG 159
              R +       R  ++ +    +  V Q+A G  H++    E G V+ +G
Sbjct: 1035 STRDE------LRPCLVTELLGNR--VTQIACGRWHTLAYVSELGKVFAFG 1077


>gi|50978834|ref|NP_001003126.1| X-linked retinitis pigmentosa GTPase regulator [Canis lupus
           familiaris]
 gi|23396836|sp|Q9N1T2.1|RPGR_CANFA RecName: Full=X-linked retinitis pigmentosa GTPase regulator;
           Flags: Precursor
 gi|8131936|gb|AAF73144.1|AF148801_1 retinitis pigmentosa GTP-ase regulator RPGR [Canis lupus
           familiaris]
          Length = 1003

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 154/316 (48%), Gaps = 26/316 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G     +  T
Sbjct: 70  GSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLGLGDTEERST 129

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             ++       QR      ++Q++AG   S  LT +G ++ WG          ++  + V
Sbjct: 130 FHLIS--FFTSQR-----KIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENVTNVCV 182

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ--PRSQPIPVQGLS 230
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG  +        P PV G+ 
Sbjct: 183 PQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPVPGIP 242

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +  + I  
Sbjct: 243 G-KVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETS-VPKAIEHIKDQKISF 299

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++CG  H+  +T  G +++FG G HG+LG G + +T Q +        P    + +  R+
Sbjct: 300 IACGENHTALITDMGLMYTFGDGRHGKLGLGLENSTNQFI--------PTLCSNFL--RF 349

Query: 351 IAKLVACGGRHTLAIV 366
           I +LV+CGG HTL   
Sbjct: 350 IVQLVSCGGCHTLVFA 365



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ V+T    ++      WGQ    G    +S P  V+ L  E+VK  A G  H
Sbjct: 40  LSCGDEHTAVVTGNNKLYMFGSNNWGQ-LGLGSKSTVSKPTCVKALKPEKVKFAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT+ RS    +    S   +  ++AG   S ALT+D
Sbjct: 99  TLVSTEGGKVYAAGGNNEGQLGLGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    + ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 159 GELFMWGDNSEGQIGL--ENVTNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGQLYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   ++     M  P+          G+  + +   VACGG HT+ + E
Sbjct: 215 GEPECGKLGLPNQLLVNHRMPQPV---------PGIPGKVVQ--VACGGGHTVVLTE 260



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 151/328 (46%), Gaps = 38/328 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKT+  ENIPS+     N      + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKTQFAENIPSKF-WFRNDVPTFLSCGDEHTAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  V    C   L    V+  A G  H++V T  G V+  G        
Sbjct: 69  --------LGSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLG 120

Query: 164 PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++ S    +       ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERSTFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLENV--T 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T +G++Y +G  E G+LG  +    +  +PQ V
Sbjct: 179 NVCVPQQVTVGKPISWISCGYYHSAFVTTEGQLYTFGEPECGKLGLPNQLLVNHRMPQPV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             + G+ +VQV+CGG H+V LT    +++FG G  G+LG G  +          ++P   
Sbjct: 239 PGIPGK-VVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFL-------FETSVP--- 286

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            A + +  + I+  +ACG  HT  I + 
Sbjct: 287 KAIEHIKDQKIS-FIACGENHTALITDM 313


>gi|296087557|emb|CBI34146.3| unnamed protein product [Vitis vinifera]
          Length = 329

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 21/245 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-----------ISVPVRVQGLE-QVK 183
           +R +A  GTH+  +T  G ++TWG+    G +             +S+P +V+ L   V 
Sbjct: 89  IRHIATAGTHTAAITESGELYTWGRDQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVA 148

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            ++ G F  + L ++G LW WG N   +LG GD     +P P+  L  + ++ IA+GG+H
Sbjct: 149 AVSCGGFFTMVLTQEGQLWNWGANSNYELGRGDKVGGWKPQPIPSLQDVRIIQIASGGYH 208

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S ALTDDG+V  WG G+HG+L  G +   ++ +P  +  LA E ++ ++CGG+ S A+T 
Sbjct: 209 SLALTDDGKVLSWGYGQHGQL--GHSSIENQKIPTVIEALADEHVIYIACGGSSSAAITD 266

Query: 304 DGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
           +G ++ +G     +LG  G   T   P+EV   +   R     V        VA G  H 
Sbjct: 267 NGKLYMWGNAKDSQLGVPGLPETQPLPVEVKFLMEDDRLGPHNVLS------VAVGASHA 320

Query: 363 LAIVE 367
           + +V 
Sbjct: 321 MCLVS 325



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 19/255 (7%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE-YGQCGEEPERKDDTGRIL 120
           E +P  V    N KI   A  G H  A+ + G  Y WG ++  G+ G  P    + G  L
Sbjct: 75  ELLPRMVEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGDGRLGLGPNCGPNEGGGL 134

Query: 121 RRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVR 175
                IP +  A  + V  V+ GG  ++VLT+EG +W WG         GD      P  
Sbjct: 135 S----IPSKVKALPVPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELGRGDKVGGWKPQP 190

Query: 176 VQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           +  L+ V++  IA G +H+LAL +DG + +WG  ++GQLG    + +  P  ++ L+   
Sbjct: 191 IPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQHGQLGHSSIENQKIPTVIEALADEH 250

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED------ 287
           ++ IA GG  S A+TD+G++Y WG  +  +LG     ++  + P +V  L  +D      
Sbjct: 251 VIYIACGGSSSAAITDNGKLYMWGNAKDSQLGVPGLPETQPL-PVEVKFLMEDDRLGPHN 309

Query: 288 IVQVSCGGTHSVALT 302
           ++ V+ G +H++ L 
Sbjct: 310 VLSVAVGASHAMCLV 324



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE-HGR 263
           G   +G LG         P  V+G     +  IA  G H+ A+T+ GE+Y WGR +  GR
Sbjct: 60  GYGGFGALGHSVYHRELLPRMVEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGDGR 119

Query: 264 LGF----GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           LG     G N+     +P KV  L    +  VSCGG  ++ LT++G ++++G   +  LG
Sbjct: 120 LGLGPNCGPNEGGGLSIPSKVKALP-VPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELG 178

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G KV   +P  +P             D R I   +A GG H+LA+ +
Sbjct: 179 RGDKVGGWKPQPIP----------SLQDVRIIQ--IASGGYHSLALTD 214



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 45/225 (20%)

Query: 7   IIAWGSGE-DGQLGIGNN---EEREWVCV---VKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +  WG  + DG+LG+G N    E   + +   VKAL P  V +V  G   ++ +  +G+ 
Sbjct: 108 LYTWGRDQGDGRLGLGPNCGPNEGGGLSIPSKVKAL-PVPVAAVSCGGFFTMVLTQEGQL 166

Query: 60  ----KTENI------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                  N             P  + +L + +I+Q A GG+H LA+ D G+  +WG  ++
Sbjct: 167 WNWGANSNYELGRGDKVGGWKPQPIPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQH 226

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---- 159
           GQ G           ++       +  A + ++  +A GG+ S  +T  G ++ WG    
Sbjct: 227 GQLGHSSIENQKIPTVI-------EALADEHVI-YIACGGSSSAAITDNGKLYMWGNAKD 278

Query: 160 -QPWPPGDIKQISVPVRVQGLEQ--------VKLIAVGAFHNLAL 195
            Q   PG  +   +PV V+ L +        V  +AVGA H + L
Sbjct: 279 SQLGVPGLPETQPLPVEVKFLMEDDRLGPHNVLSVAVGASHAMCL 323



 Score = 38.5 bits (88), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 26/155 (16%)

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R  PI +Q +    L+ +A   W S  L     V    RG  G    G +    +++P+ 
Sbjct: 27  RLIPIWIQFV---LLLLVAFIRWLSARLAKFSHVC---RGYGGFGALGHSVYHRELLPRM 80

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR--GDHGRLGYGRKV--TTGQPMEVPIN 335
           V       I  ++  GTH+ A+T  G ++++GR  GD GRLG G       G  + +P  
Sbjct: 81  VEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGD-GRLGLGPNCGPNEGGGLSIPSK 139

Query: 336 I---PAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +   P P  A            V+CGG  T+ + +
Sbjct: 140 VKALPVPVAA------------VSCGGFFTMVLTQ 162


>gi|408501033|ref|YP_006864952.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465857|gb|AFU71386.1| RCC1 repeat-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1190

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 166/401 (41%), Gaps = 83/401 (20%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVRSVVAGSRNSLAICDDG 57
            AWG  + G+LG G   E      V   +P           +    V AGS++SLA+  DG
Sbjct: 695  AWGGNKKGELGDGTTSENARSTPVMVKQPDRKTYPDLPADFTYVQVSAGSQHSLAVGSDG 754

Query: 58   K----------------TKTENIPSQVNALSNTKI----VQAAIGGWHCLAVDDQGRAYA 97
                             +  ++ P +V   + T      VQ + G  H LA+   G AYA
Sbjct: 755  NAYAWGRNDDGRLGDGTSTDQHTPVRVKKPAGTSTDFTYVQVSAGYHHSLALGSDGNAYA 814

Query: 98   WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
            WG N  GQ G+       T R     +  P   +      QV+AG  HS+ L  +G+ + 
Sbjct: 815  WGYNNSGQLGDGTS----TDRATSVRVKKPAGTSTDFTYVQVSAGAFHSLALGSDGNAYA 870

Query: 158  WGQPWPPGDIKQI--------SVPVRVQGLE------QVKLIAVGAFHNLALQEDGALWA 203
            WG      +  Q+        + PV+V              I  G  H+LA+  DG  +A
Sbjct: 871  WGL----NNFGQLGDGTSTDRATPVKVGTPAGTPTDFTYAQIGAGYLHSLAVGSDGYAYA 926

Query: 204  WGNNEYGQLGT----GDTQPRSQPI-------PVQGLSGLTLVDIAAGGWHSTALTDDGE 252
            WG N  GQLG     G   P   P+       P     GL  V++ AG WHS AL  DG 
Sbjct: 927  WGYNFSGQLGNNSKGGFFSPNPNPVRVRNPASPNDADKGLKAVNVTAGFWHSLALGSDGN 986

Query: 253  VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-------GEDIVQVSCGGTHSVALTRDG 305
             Y WG   +G+LG  +N      VP  V+  A       G   V VS G  HS+AL  DG
Sbjct: 987  AYAWGFNSNGQLG--NNSSKDSTVPVLVSDSASPTDTSKGLKAVLVSTGQYHSLALGSDG 1044

Query: 306  HIFSFGRGDHGRLGYGRKVTTG-------QPMEVPI--NIP 337
            + +++G   +G+LG    + TG        P+ VP+  N+P
Sbjct: 1045 NAYAWGDNGYGQLG-NNSIPTGSNNNEARSPVPVPVVFNLP 1084



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 145/321 (45%), Gaps = 28/321 (8%)

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE--EPERKDDTGRILRR- 122
           SQV+A S   +          LAV   G AYAWGGN+ G+ G+    E    T  ++++ 
Sbjct: 668 SQVSASSFVSVTDFGF----SLAVGSDGNAYAWGGNKKGELGDGTTSENARSTPVMVKQP 723

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQG 178
           D              QV+AG  HS+ +  +G+ + WG+        G       PVRV+ 
Sbjct: 724 DRKTYPDLPADFTYVQVSAGSQHSLAVGSDGNAYAWGRNDDGRLGDGTSTDQHTPVRVKK 783

Query: 179 LEQVKL------IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG- 231
                       ++ G  H+LAL  DG  +AWG N  GQLG G +  R+  + V+  +G 
Sbjct: 784 PAGTSTDFTYVQVSAGYHHSLALGSDGNAYAWGYNNSGQLGDGTSTDRATSVRVKKPAGT 843

Query: 232 ---LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE-- 286
               T V ++AG +HS AL  DG  Y WG    G+L  GD   + +  P KV   AG   
Sbjct: 844 STDFTYVQVSAGAFHSLALGSDGNAYAWGLNNFGQL--GDGTSTDRATPVKVGTPAGTPT 901

Query: 287 --DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
                Q+  G  HS+A+  DG+ +++G    G+LG   K     P   P+ +  P +  D
Sbjct: 902 DFTYAQIGAGYLHSLAVGSDGYAYAWGYNFSGQLGNNSKGGFFSPNPNPVRVRNPASPND 961

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
             D+   A  V  G  H+LA+
Sbjct: 962 -ADKGLKAVNVTAGFWHSLAL 981



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 117/274 (42%), Gaps = 50/274 (18%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDD 56
            + S  +  AWG    GQLG G + +R     VK        +    V AG+ +SLA+  D
Sbjct: 806  LGSDGNAYAWGYNNSGQLGDGTSTDRATSVRVKKPAGTSTDFTYVQVSAGAFHSLALGSD 865

Query: 57   GK---------------TKTEN-IPSQVN--ALSNTKIVQAAIGG--WHCLAVDDQGRAY 96
            G                T T+   P +V   A + T    A IG    H LAV   G AY
Sbjct: 866  GNAYAWGLNNFGQLGDGTSTDRATPVKVGTPAGTPTDFTYAQIGAGYLHSLAVGSDGYAY 925

Query: 97   AWGGNEYGQCGEEPE---RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
            AWG N  GQ G   +      +   +  R+   P      L    V AG  HS+ L  +G
Sbjct: 926  AWGYNFSGQLGNNSKGGFFSPNPNPVRVRNPASPNDADKGLKAVNVTAGFWHSLALGSDG 985

Query: 154  HVWTWGQ----PWPPGDIKQISVPVRV----------QGLEQVKLIAVGAFHNLALQEDG 199
            + + WG            K  +VPV V          +GL+ V L++ G +H+LAL  DG
Sbjct: 986  NAYAWGFNSNGQLGNNSSKDSTVPVLVSDSASPTDTSKGLKAV-LVSTGQYHSLALGSDG 1044

Query: 200  ALWAWGNNEYGQL-------GTGDTQPRSQPIPV 226
              +AWG+N YGQL       G+ + + RS P+PV
Sbjct: 1045 NAYAWGDNGYGQLGNNSIPTGSNNNEARS-PVPV 1077


>gi|405954128|gb|EKC21651.1| Putative E3 ubiquitin-protein ligase HERC1 [Crassostrea gigas]
          Length = 826

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 146/289 (50%), Gaps = 34/289 (11%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G  Y+WG  +YG+ G          ++++  +V         +V+ V+AG  
Sbjct: 493 HSLALTTTGEVYSWGDGDYGKLGHGTHSTQKIPKLVKGPLV-------GKVVKCVSAGYR 545

Query: 145 HSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAVGAFHNLALQ 196
           HS  +T +G ++TWG     G+  ++        + P +VQ +E V L+A G  H LA+ 
Sbjct: 546 HSAAVTEDGELYTWGD----GEFGRLGHDYTSSKNFPTKVQSIESVGLVACGGSHTLAVS 601

Query: 197 EDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           +DG  +W++G  E G+LG GDT  + +P  ++ L+GL +  +A G   S A+T  G++Y 
Sbjct: 602 QDGKTIWSFGGGENGKLGHGDTNRQLKPKVIEALNGLYIRKVACGSQSSLAVTSSGQLYA 661

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG G    LG G  + ++ + P+ V  L  + +V ++CG +H +ALT +  ++++G    
Sbjct: 662 WGCG--AILGCGSAEYTA-LRPRLVEDLQSKRMVDIACGDSHVIALTHESEVYAWGNNAM 718

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G+ G G         + PI  P      DGV        V+ G  H++A
Sbjct: 719 GQCGQGHA-------QSPITRPKRVIGLDGVS----VHQVSAGTSHSVA 756



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 145/284 (51%), Gaps = 36/284 (12%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G  Y WG N   Q  E  + K          I  P+  A     +QV AG   + ++  +
Sbjct: 397 GEVYVWGSNCTHQLAEGGQEK----------ITTPKYSAVFTDCQQVEAGQFCTFLIYSD 446

Query: 153 GHVWTWGQ----PWPPGDIKQISVPVR-VQGLEQVKLIAVGA---FHNLALQEDGALWAW 204
           G V   G+        GD    SVP + +   + VK I+       H+LAL   G +++W
Sbjct: 447 GTVGACGKGSYGRLGLGDSNNCSVPKKPLFDKKYVKKISSSKGSDGHSLALTTTGEVYSW 506

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           G+ +YG+LG G    +  P  V+G L G  +  ++AG  HS A+T+DGE+Y WG GE GR
Sbjct: 507 GDGDYGKLGHGTHSTQKIPKLVKGPLVGKVVKCVSAGYRHSAAVTEDGELYTWGDGEFGR 566

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGR 322
           L  G +  SSK  P KV  +  E +  V+CGG+H++A+++DG  I+SFG G++G+LG+G 
Sbjct: 567 L--GHDYTSSKNFPTKVQSI--ESVGLVACGGSHTLAVSQDGKTIWSFGGGENGKLGHGD 622

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                +P  +           + ++  +I K VACG + +LA+ 
Sbjct: 623 TNRQLKPKVI-----------EALNGLYIRK-VACGSQSSLAVT 654



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 139/272 (51%), Gaps = 34/272 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKA-LEPYKVRSVVAGSRNSLAICDDGK- 58
           + +T  + +WG G+ G+LG G +  ++   +VK  L    V+ V AG R+S A+ +DG+ 
Sbjct: 497 LTTTGEVYSWGDGDYGKLGHGTHSTQKIPKLVKGPLVGKVVKCVSAGYRHSAAVTEDGEL 556

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNE 102
                          T ++N P++V ++ +  +V  A GG H LAV   G+  +++GG E
Sbjct: 557 YTWGDGEFGRLGHDYTSSKNFPTKVQSIESVGLV--ACGGSHTLAVSQDGKTIWSFGGGE 614

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW--GQ 160
            G+ G       DT R L+  ++        L +R+VA G   S+ +T  G ++ W  G 
Sbjct: 615 NGKLGH-----GDTNRQLKPKVI---EALNGLYIRKVACGSQSSLAVTSSGQLYAWGCGA 666

Query: 161 PWPPGDIKQISV-PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               G  +  ++ P  V+ L+  ++  IA G  H +AL  +  ++AWGNN  GQ G G  
Sbjct: 667 ILGCGSAEYTALRPRLVEDLQSKRMVDIACGDSHVIALTHESEVYAWGNNAMGQCGQGHA 726

Query: 218 Q-PRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
           Q P ++P  V GL G+++  ++AG  HS A T
Sbjct: 727 QSPITRPKRVIGLDGVSVHQVSAGTSHSVAWT 758


>gi|313221390|emb|CBY32143.1| unnamed protein product [Oikopleura dioica]
          Length = 560

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 162/344 (47%), Gaps = 38/344 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDGKTKTENIP 65
           +  WGS    QL     E++  +   + L  Y KV S+ AG   + A+  +G T   N  
Sbjct: 131 VFCWGSNSSQQLTDATPEDK--LLYPRNLSVYGKVMSITAGQYCTFAVLSNG-TVMANGK 187

Query: 66  SQVNALSN------------------TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                L N                   KI+ +     H +A+   G+ + WG  +YG+ G
Sbjct: 188 GSYGRLGNGASASSSSPILIEFPAPVRKILTSKGSDGHSMAIGKNGQIWTWGDGDYGKLG 247

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   + +++       +  A ++IV     G  HS  +   GH++ WG+       
Sbjct: 248 HGDSTTQKSPKLI-------EALASRVIV-DADCGHRHSAAVCDAGHLYMWGEGDYGRLG 299

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQ 222
            GD  Q SVPV+V  + +   +  G  H + L  DG  +W++G  E G+LG GDT  + +
Sbjct: 300 LGDALQRSVPVQVPDIREASQVVCGFNHTVVLSTDGRTVWSFGAAENGKLGHGDTNRQFR 359

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +  L GLT+  IAAG   S A+T +G +Y WG G    LG G +D++  M+P+ V  
Sbjct: 360 PKIIDALQGLTITQIAAGTQISAAVTREGALYVWGFGPC--LGNGSSDETF-MLPKVVRG 416

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           L+G  ++ ++ G  H VALT+DG +F++G   +G+ G G  + T
Sbjct: 417 LSGRVVIDIAIGENHVVALTKDGLVFTWGNNQNGQCGTGSGMAT 460



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 150/323 (46%), Gaps = 40/323 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR-NSLAICDDGK--- 58
           S  +++A G G  G+LG G +       +++   P +      GS  +S+AI  +G+   
Sbjct: 178 SNGTVMANGKGSYGRLGNGASASSSSPILIEFPAPVRKILTSKGSDGHSMAIGKNGQIWT 237

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        + T+  P  + AL++  IV A  G  H  AV D G  Y WG  +YG+
Sbjct: 238 WGDGDYGKLGHGDSTTQKSPKLIEALASRVIVDADCGHRHSAAVCDAGHLYMWGEGDYGR 297

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQP--- 161
            G         G  L+R +  P +        QV  G  H+VVL+ +G  VW++G     
Sbjct: 298 LG--------LGDALQRSV--PVQVPDIREASQVVCGFNHTVVLSTDGRTVWSFGAAENG 347

Query: 162 -WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQ-LGTGDT 217
               GD  +   P  +  L+ + +  IA G   + A+  +GAL+ WG   +G  LG G +
Sbjct: 348 KLGHGDTNRQFRPKIIDALQGLTITQIAAGTQISAAVTREGALYVWG---FGPCLGNGSS 404

Query: 218 -QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +    P  V+GLSG  ++DIA G  H  ALT DG V+ WG  ++G+ G G    ++   
Sbjct: 405 DETFMLPKVVRGLSGRVVIDIAIGENHVVALTKDGLVFTWGNNQNGQCGTGSG-MATYTS 463

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV 299
           PQ V  L G  I QV+ G TH+ 
Sbjct: 464 PQMVQGLHGAGIQQVTAGTTHTF 486



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V  I  G +   A+  +G + A G   YG+LG G +   S PI ++  + +  +  + G
Sbjct: 162 KVMSITAGQYCTFAVLSNGTVMANGKGSYGRLGNGASASSSSPILIEFPAPVRKILTSKG 221

Query: 241 G-WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
              HS A+  +G+++ WG G++G+LG GD+  +++  P+ +  LA   IV   CG  HS 
Sbjct: 222 SDGHSMAIGKNGQIWTWGDGDYGKLGHGDS--TTQKSPKLIEALASRVIVDADCGHRHSA 279

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+   GH++ +G GD+GRLG G  +       VP+ +P  R A            V CG 
Sbjct: 280 AVCDAGHLYMWGEGDYGRLGLGDAL----QRSVPVQVPDIREASQ----------VVCGF 325

Query: 360 RHTLAI 365
            HT+ +
Sbjct: 326 NHTVVL 331



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 39/179 (21%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------- 57
           ++G+ E+G+LG G+   +    ++ AL+   +  + AG++ S A+  +G           
Sbjct: 340 SFGAAENGKLGHGDTNRQFRPKIIDALQGLTITQIAAGTQISAAVTREGALYVWGFGPCL 399

Query: 58  ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 +T  +P  V  LS   ++  AIG  H +A+   G  + WG N+ GQCG      
Sbjct: 400 GNGSSDETFMLPKVVRGLSGRVVIDIAIGENHVVALTKDGLVFTWGNNQNGQCG------ 453

Query: 114 DDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTR---EGHVWTWGQPW 162
             TG  +          +P+++       ++QV AG TH+ V +    E H+ T  +P+
Sbjct: 454 --TGSGM------ATYTSPQMVQGLHGAGIQQVTAGTTHTFVWSAAPCEEHLQTKQKPF 504


>gi|348688462|gb|EGZ28276.1| hypothetical protein PHYSODRAFT_476799 [Phytophthora sojae]
          Length = 1699

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 175/397 (44%), Gaps = 58/397 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI-- 64
           + + G    G+LG G++ ER  +  V       +R VV+G+     + ++G   T  +  
Sbjct: 330 LYSCGQNSYGELGTGDDIERHQLTSVSLCGWDDIRQVVSGNETLAVLTNEGVVLTCGLNK 389

Query: 65  -----------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                            P Q       K + A+ G  H +A+ D G AY+WG N+ GQ G
Sbjct: 390 SGQCGQGHFDERVMMLRPVQALRSQRVKFIAASNGCEHMIALTDTGLAYSWGYNDRGQLG 449

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQPWPP 164
            E          L   I +P +    L  +++        HS V+T  G ++T+G     
Sbjct: 450 HEN---------LATKIHVP-KLIESLKDKKLGFASVSYHHSAVITDAGELYTFGM---- 495

Query: 165 GDIKQI--------SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
            D  Q+        S P  V+ LE  +V ++A G +H +     G L+  G N+YGQLG 
Sbjct: 496 NDCGQLGLDHTQHQSTPQLVKSLEATEVSMVACGLYHTIICTAAGELFTCGKNDYGQLGL 555

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
              +    P  V  L    +  +A G +HS  ++  G  + +GR ++G+LG G   K  +
Sbjct: 556 AHNRQIKLPTLV-ALPNEMVSFVACGYYHSVVVSTGGRAFSFGRNDYGQLGIGS--KVHQ 612

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            VP  V L +   +V+ +CG  H+V L+  G ++ FGR + G+L  G + +    + VP+
Sbjct: 613 NVPNVVALSSNTRMVRATCGCYHTVLLSEQGQVYVFGRNNKGQL--GNRGSADALLPVPL 670

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
            +   +N+   VD       VA G   T  IVE + E
Sbjct: 671 KVRPEKNSRRCVD-------VAAGFYTTSLIVERKRE 700



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           +  G L++ G N YG+LGTGD   R Q   V       +  + +G      LT++G V  
Sbjct: 325 EASGELYSCGQNSYGELGTGDDIERHQLTSVSLCGWDDIRQVVSGNETLAVLTNEGVVLT 384

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHIFSFGRG 313
            G  + G+ G G  D+   M+ + V  L  + +  +  S G  H +ALT  G  +S+G  
Sbjct: 385 CGLNKSGQCGQGHFDERVMML-RPVQALRSQRVKFIAASNGCEHMIALTDTGLAYSWGYN 443

Query: 314 DHGRLGYGRKVT 325
           D G+LG+    T
Sbjct: 444 DRGQLGHENLAT 455


>gi|406991558|gb|EKE11048.1| hypothetical protein ACD_15C00149G0001, partial [uncultured
           bacterium]
          Length = 1643

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 172/373 (46%), Gaps = 54/373 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKAL------EPYKVRSVVAGSRNSLAICDDGKT 59
           +++AWG  + GQLG  NN   +    V+ L          + SV A   +SL++  DG  
Sbjct: 379 TVVAWGKNDSGQLG--NNSYADSYVPVQVLGVDGMGNLSSIISVSADGTHSLSLKSDGTV 436

Query: 60  ----KTENIPSQVNALSN----------------TKIVQAAIGGWHCLAVDDQGRAYAWG 99
               K +     +N+  +                T IV  A G    LAV + G+A++WG
Sbjct: 437 WSWGKNDKGQLGINSFIDKKTPVQVLDSTGTGFLTDIVSIATGNKFSLAVKNDGKAWSWG 496

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT--REGHVWT 157
            +  GQ G+       T R L   I+          V  +  G  ++V      +G VW+
Sbjct: 497 YDSTGQLGDNAL----TERSLPFQILDTGATGNLSQVSFIDGGDGYAVAFKTDSDGSVWS 552

Query: 158 WGQPWPPGDIKQISV-PVRVQ---------GLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
           WG+    G +   +V PVR            +  V+ ++ G +H +AL+ DG +W WG N
Sbjct: 553 WGKN-DKGQLGNNTVDPVRTPISTWGPANGNIPDVQSVSSGRYHTIALKTDGTVWDWGGN 611

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGL----TLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
             GQLGT   Q R  PI V+G  G      +V++AAG +HS A   DG V+ WGRG  G 
Sbjct: 612 GNGQLGTTAGQNRLTPIQVRGPGGFGNLENIVEVAAGDYHSLARRSDGTVWAWGRGSLGE 671

Query: 264 LGFGDNDKSSKMVPQKVNLLAG----EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           LG G    S++  P +V   AG     ++V +S G  +SVAL  DG ++++G+ D G+LG
Sbjct: 672 LGDG-TWISTRYNPVQVKDAAGTGFLTNVVAISAGEDYSVALRSDGTVWAWGKNDRGQLG 730

Query: 320 YGRKVTTGQPMEV 332
                    P++V
Sbjct: 731 DNSTNYKNLPVQV 743



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 138/284 (48%), Gaps = 32/284 (11%)

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC 130
           LS + +   + G    LA+      ++WG N  GQ G+    K    R     +V     
Sbjct: 188 LSFSGVAAISAGNSFVLAIKSDNSVWSWGENTSGQLGD----KTLIDRYTPVQVVGAGGS 243

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQG---- 178
                +  V+AG  HS+ L  +G VW+WG      D  Q+        ++PV+V G    
Sbjct: 244 GYLNDIEMVSAGTNHSLALKSDGTVWSWGN----NDNGQLGNNLVSLKNIPVQVVGPGGI 299

Query: 179 --LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---- 232
             L  V  ++ G  ++LAL+ DG +W+WG N  GQLG      +  P+ V G+ G+    
Sbjct: 300 GVLSNVISVSAGEGYSLALKSDGTVWSWGKNTVGQLGDNTIVEKHYPVQVLGVGGVEFLS 359

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG----EDI 288
           ++  I+AG  ++ A+  DG V  WG+ + G+L  G+N  +   VP +V  + G      I
Sbjct: 360 SVASISAGASYALAVKSDGTVVAWGKNDSGQL--GNNSYADSYVPVQVLGVDGMGNLSSI 417

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + VS  GTHS++L  DG ++S+G+ D G+LG    +    P++V
Sbjct: 418 ISVSADGTHSLSLKSDGTVWSWGKNDKGQLGINSFIDKKTPVQV 461



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 144/299 (48%), Gaps = 30/299 (10%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G +H +A+   G  + WGGN  GQ G    +     R+    +  P        + +VAA
Sbjct: 592 GRYHTIALKTDGTVWDWGGNGNGQLGTTAGQN----RLTPIQVRGPGGFGNLENIVEVAA 647

Query: 142 GGTHSVVLTREGHVWTWGQPW--PPGDIKQISV---PVRVQG------LEQVKLIAVGAF 190
           G  HS+    +G VW WG+      GD   IS    PV+V+       L  V  I+ G  
Sbjct: 648 GDYHSLARRSDGTVWAWGRGSLGELGDGTWISTRYNPVQVKDAAGTGFLTNVVAISAGED 707

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD----IAAGGWHSTA 246
           +++AL+ DG +WAWG N+ GQLG   T  ++ P+ V G+ G   ++    I+AG      
Sbjct: 708 YSVALRSDGTVWAWGKNDRGQLGDNSTNYKNLPVQVLGVGGAGFLNNVSSISAGSNFVLV 767

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
             +DG V+ WG   +G+L  GDN  S K+ P +V  L   ++  +S G  HS+AL  DG 
Sbjct: 768 AKNDGTVFSWGHNANGQL--GDNTVSGKLTPIQV--LNINNVSSISAGYAHSLALKTDGS 823

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           ++S+G   +G+LG G  +       +P+ +      G   D   I+K +A G  H L +
Sbjct: 824 VWSWGWNGNGQLGEGTNIDNSL---LPLQVKNSTGTGFLSD---ISK-IATGSNHCLVM 875



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 135/280 (48%), Gaps = 26/280 (9%)

Query: 71  LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC 130
           L++ ++V A  G  H LA+   G  ++WG N+ GQ G       +    +   +V P   
Sbjct: 246 LNDIEMVSA--GTNHSLALKSDGTVWSWGNNDNGQLGNNLVSLKN----IPVQVVGPGGI 299

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD--IKQISVPVRVQG------LE 180
                V  V+AG  +S+ L  +G VW+WG+      GD  I +   PV+V G      L 
Sbjct: 300 GVLSNVISVSAGEGYSLALKSDGTVWSWGKNTVGQLGDNTIVEKHYPVQVLGVGGVEFLS 359

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL----TLVD 236
            V  I+ GA + LA++ DG + AWG N+ GQLG         P+ V G+ G+    +++ 
Sbjct: 360 SVASISAGASYALAVKSDGTVVAWGKNDSGQLGNNSYADSYVPVQVLGVDGMGNLSSIIS 419

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG----EDIVQVS 292
           ++A G HS +L  DG V+ WG+ + G+LG   N    K  P +V    G     DIV ++
Sbjct: 420 VSADGTHSLSLKSDGTVWSWGKNDKGQLGI--NSFIDKKTPVQVLDSTGTGFLTDIVSIA 477

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            G   S+A+  DG  +S+G    G+LG         P ++
Sbjct: 478 TGNKFSLAVKNDGKAWSWGYDSTGQLGDNALTERSLPFQI 517



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 175/420 (41%), Gaps = 83/420 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           + S  ++ +WG+ ++GQLG  NN        V+ + P        V SV AG   SLA+ 
Sbjct: 262 LKSDGTVWSWGNNDNGQLG--NNLVSLKNIPVQVVGPGGIGVLSNVISVSAGEGYSLALK 319

Query: 55  DDGKTKT----------------ENIPSQVNALSNTKIVQA----AIGGWHCLAVDDQGR 94
            DG   +                ++ P QV  +   + + +    + G  + LAV   G 
Sbjct: 320 SDGTVWSWGKNTVGQLGDNTIVEKHYPVQVLGVGGVEFLSSVASISAGASYALAVKSDGT 379

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC------APKLIVRQVAAGGTHSVV 148
             AWG N+ GQ G               D  +P +            +  V+A GTHS+ 
Sbjct: 380 VVAWGKNDSGQLGNNS----------YADSYVPVQVLGVDGMGNLSSIISVSADGTHSLS 429

Query: 149 LTREGHVWTWGQPWPPGDIKQISV--------PVRVQG------LEQVKLIAVGAFHNLA 194
           L  +G VW+WG+     D  Q+ +        PV+V        L  +  IA G   +LA
Sbjct: 430 LKSDGTVWSWGK----NDKGQLGINSFIDKKTPVQVLDSTGTGFLTDIVSIATGNKFSLA 485

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ------GLSGLTLVDIAAGGWHSTALT 248
           ++ DG  W+WG +  GQLG      RS P  +        LS ++ +D   G   +    
Sbjct: 486 VKNDGKAWSWGYDSTGQLGDNALTERSLPFQILDTGATGNLSQVSFIDGGDGYAVAFKTD 545

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMV----PQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            DG V+ WG+ + G+LG    D     +    P   N+    D+  VS G  H++AL  D
Sbjct: 546 SDGSVWSWGKNDKGQLGNNTVDPVRTPISTWGPANGNI---PDVQSVSSGRYHTIALKTD 602

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++ +G   +G+LG     T GQ    PI +  P   G   +   I + VA G  H+LA
Sbjct: 603 GTVWDWGGNGNGQLG----TTAGQNRLTPIQVRGPGGFG---NLENIVE-VAAGDYHSLA 654



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 63/347 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREW----------------VCVVKALEPYKVR-----SVV 44
           ++ AWG G  G+LG G      +                V  + A E Y V      +V 
Sbjct: 660 TVWAWGRGSLGELGDGTWISTRYNPVQVKDAAGTGFLTNVVAISAGEDYSVALRSDGTVW 719

Query: 45  AGSRNSLAICDDGKTKTENIPSQV------NALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           A  +N      D  T  +N+P QV        L+N   + A  G    L   + G  ++W
Sbjct: 720 AWGKNDRGQLGDNSTNYKNLPVQVLGVGGAGFLNNVSSISA--GSNFVLVAKNDGTVFSW 777

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N  GQ G+       +G++       P +      V  ++AG  HS+ L  +G VW+W
Sbjct: 778 GHNANGQLGDNTV----SGKL------TPIQVLNINNVSSISAGYAHSLALKTDGSVWSW 827

Query: 159 G-----QPWPPGDIKQISVPVRVQG------LEQVKLIAVGAFHNLALQEDGALWAWGNN 207
           G     Q     +I    +P++V+       L  +  IA G+ H L ++ D   +AWG N
Sbjct: 828 GWNGNGQLGEGTNIDNSLLPLQVKNSTGTGFLSDISKIATGSNHCLVMKSDNTAFAWGLN 887

Query: 208 EYGQLGTGDTQPRSQPIPV---QGLSGLTLVDIAAGGWHSTAL--TDDGEVYGWGRGEHG 262
             GQLG      ++ P+ V    G SG T V     G+ ++ +  + D  V+ WG   +G
Sbjct: 888 GNGQLGNNSIVNKNLPVQVLNSNGSSGFTGVSFVEAGFANSTIIKSSDSLVWNWGINSYG 947

Query: 263 RLGFGDNDKSSKMVPQKV------NLLAGEDIVQVSCGGTHSVALTR 303
            L  G+N     ++P  V      N+  G+     S   T +V  T+
Sbjct: 948 EL--GNNRVDGTLLPVSVWGSASGNMKVGKTFYNSSGNFTSAVIDTK 992


>gi|330837469|ref|YP_004412110.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
 gi|329749372|gb|AEC02728.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
          Length = 874

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 39/323 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGK--TKTENIPSQVNALSNTKI----------VQAAIGGWHC 86
           KV+SV   S +++ +  DG      +N  SQ+    NT I             + G +H 
Sbjct: 506 KVKSVSFKSFHTMLLKIDGTLWATGQNTHSQLGVGGNTNINTPVKVMTDVAAVSAGYYHT 565

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK-LIVRQVAAGGTH 145
           + V + G  +A G N+YGQ G           IL  D   P +       V+ V+AG  H
Sbjct: 566 MIVKENGTLWATGNNQYGQLG--------LASILGTDKNTPVKVTSMGAAVKAVSAGSYH 617

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG-------LEQVKLIAVGAFHNLA 194
           +++L ++G +W  G+        G      +PV+V+        +  V+ ++ G +H + 
Sbjct: 618 TMILKKDGTLWATGRNNYGQLGDGTTDSKGMPVQVKASTTPNDFMTDVEAVSTGVYHTMI 677

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L++DG LWA G NEYGQLG G +  RS P+ V  + G  +  ++AG  H+  L  DG ++
Sbjct: 678 LKKDGTLWATGYNEYGQLGDGTSNDRSTPVQVLSM-GADVAAVSAGENHTMILKKDGTLW 736

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKV---NLLAG--EDIVQVSCGGTHSVALTRDGHIFS 309
             G+  +G+LG  D+  ++K  P +V     ++G   D+  VS G  H++ L  DG +++
Sbjct: 737 ATGQNTYGQLGDSDS-GTNKNTPVQVKDDTDISGFMTDVAAVSAGYGHTMILKMDGTLWA 795

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV 332
            GR ++G+LG G    T  P++V
Sbjct: 796 IGRNEYGQLGVGNHNDTSTPVQV 818



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 118/254 (46%), Gaps = 28/254 (11%)

Query: 45  AGSRNSLAICDDGKTKTENIPSQVNALSN-----TKIVQAAIGGWHCLAVDDQGRAYAWG 99
           A  RN+     DG T ++ +P QV A +      T +   + G +H + +   G  +A G
Sbjct: 629 ATGRNNYGQLGDGTTDSKGMPVQVKASTTPNDFMTDVEAVSTGVYHTMILKKDGTLWATG 688

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW--- 156
            NEYGQ G+       T           Q  +    V  V+AG  H+++L ++G +W   
Sbjct: 689 YNEYGQLGDGTSNDRSTPV---------QVLSMGADVAAVSAGENHTMILKKDGTLWATG 739

Query: 157 --TWGQPWPPGDIKQISVPVRVQG-------LEQVKLIAVGAFHNLALQEDGALWAWGNN 207
             T+GQ          + PV+V+        +  V  ++ G  H + L+ DG LWA G N
Sbjct: 740 QNTYGQLGDSDSGTNKNTPVQVKDDTDISGFMTDVAAVSAGYGHTMILKMDGTLWAIGRN 799

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           EYGQLG G+    S P+ V  + G  +  + AG  ++  L  DG ++  G    G+LG G
Sbjct: 800 EYGQLGVGNHNDTSTPVQVSSM-GSDVAAVFAGEAYTMILKKDGSLWATGFNTDGQLGLG 858

Query: 268 DN-DKSSKMVPQKV 280
           D+  ++ +  P++V
Sbjct: 859 DSGPETHRSSPEQV 872


>gi|417781462|ref|ZP_12429211.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           weilii str. 2006001853]
 gi|410778193|gb|EKR62822.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           weilii str. 2006001853]
          Length = 506

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 151/349 (43%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 193 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRT--AGNRQP---------- 230

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  + +   V  A G  H L +   G   A+G N  GQ G      +     +
Sbjct: 231 ----PTLVPGIDDA--VMGAYGFNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSM 284

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 285 NPVAVVGLRD-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANTAQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT-GDTQPRSQPIPVQGLS 230
           +PV+V+GL ++K IA G  H LAL  DG +++WG N  GQLG  G+  P   PIP Q L+
Sbjct: 339 IPVKVEGLPEIKQIANGRDHILALASDGRIYSWGLNASGQLGIGGNGSPNPTPIPTQVLN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            L    + AGG  S ++   GEV GWG  G    L  G+ +      P K  ++  +D++
Sbjct: 399 ILNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTQKVYEPNKA-VVGIDDVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+  L  +G I+ +G    G LG    +   G P  V I +P
Sbjct: 458 HFGCGATHNFVLLGNGEIYGWGWNFKGSLGRQDLQANWGAPNPVSITLP 506



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAG 240
            KL A GA       ++G ++  G N +GQLGTG+ T   +  + V+  S   +  I   
Sbjct: 129 TKLSAGGAHS--GFLKNGEVYTTGRNNFGQLGTGNSTGDENNDVIVKLNSIRNISSIHFN 186

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS-----SKMVPQKVNLLAG-EDIVQVSCG 294
             +S A+  +G VY WG    G+LG G+N+ +     +    Q   L+ G +D V  + G
Sbjct: 187 QNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQPPTLVPGIDDAVMGAYG 246

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV-PINIPAPRNAGDGVDRRWIAK 353
             H++ L  DG I +FG+ + G+LG G          + P+ +         V  R + +
Sbjct: 247 FNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSMNPVAV---------VGLRDVIQ 297

Query: 354 LVACGGRHTLAIVE 367
           ++A G  H+ A+ E
Sbjct: 298 VIA-GSEHSAALTE 310


>gi|302804446|ref|XP_002983975.1| hypothetical protein SELMODRAFT_119181 [Selaginella moellendorffii]
 gi|300148327|gb|EFJ14987.1| hypothetical protein SELMODRAFT_119181 [Selaginella moellendorffii]
          Length = 435

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 179/404 (44%), Gaps = 65/404 (16%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALE--------------PYKVR----SVVAGSRNS 50
           AWG G  GQ+G G+ +  +   ++  L+              P K R     V  G  +S
Sbjct: 39  AWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGLFHS 98

Query: 51  LAIC----------DDGKTKTENIPSQVNALSNTKIVQ---AAIGGWHCLAVDDQGRAYA 97
           +             D G+   +   +Q     N +I +   A+ GG H +A+ + G  Y 
Sbjct: 99  VLFAEQDVFVWGKGDGGRLGIDTEFNQYKPYVNPRIKRVQMASAGGLHNIALTEVGNVYT 158

Query: 98  WGGNEYGQCGEEPERKDDTGRILR---RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
           WG   +G  G     ++   R+L    +D ++            V+AGG+HS  +T  G 
Sbjct: 159 WGYGAFGALGHGSYERELLPRLLEGPWKDRIV-----------HVSAGGSHSAAVTESGE 207

Query: 155 VWTWGQPWPPG----------DIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWA 203
           ++TWG+    G          D   +S P +VQ L+  +  +  G F  +AL + G LW+
Sbjct: 208 LYTWGRDEGEGRLGHGNPDIMDEGALSRPTKVQALDVPIASVYCGGFFTMALTKSGQLWS 267

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG N   +LG G      +P  V  L  +TLV +A GG+H+ ALT DG+V  WG G +G+
Sbjct: 268 WGGNANHELGHGTRANNWKPKVVAALEDVTLVQVACGGFHAAALTQDGKVITWGYGGNGQ 327

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GR 322
           LG G  +   +  P  V  +A +    ++CG   + A+T +G ++++G+    +LG  G 
Sbjct: 328 LGHGTLENGKE--PAIVEAMADKTCTYIACGPAWTAAITENGDLYTWGKNRDYQLGIPGL 385

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           K     P  V +  P   +    V+       V+CG  H + IV
Sbjct: 386 KDEQLDP--VLVQFPQALHEKTPVE----VLGVSCGANHGVCIV 423



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 145/329 (44%), Gaps = 34/329 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + +   +  WG G+ G+LGI + E  ++   V      +V+   AG  +++A+ + G   
Sbjct: 100 LFAEQDVFVWGKGDGGRLGI-DTEFNQYKPYVNP-RIKRVQMASAGGLHNIALTEVGNVY 157

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE-Y 103
           T                E +P  +      +IV  + GG H  AV + G  Y WG +E  
Sbjct: 158 TWGYGAFGALGHGSYERELLPRLLEGPWKDRIVHVSAGGSHSAAVTESGELYTWGRDEGE 217

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---- 159
           G+ G       D G + R   V     A  + +  V  GG  ++ LT+ G +W+WG    
Sbjct: 218 GRLGHGNPDIMDEGALSRPTKV----QALDVPIASVYCGGFFTMALTKSGQLWSWGGNAN 273

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                G       P  V  LE V L  +A G FH  AL +DG +  WG    GQLG G  
Sbjct: 274 HELGHGTRANNWKPKVVAALEDVTLVQVACGGFHAAALTQDGKVITWGYGGNGQLGHGTL 333

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMV 276
           +   +P  V+ ++  T   IA G   + A+T++G++Y WG+    +LG  G  D+    V
Sbjct: 334 ENGKEPAIVEAMADKTCTYIACGPAWTAAITENGDLYTWGKNRDYQLGIPGLKDEQLDPV 393

Query: 277 ----PQKVNLLAGEDIVQVSCGGTHSVAL 301
               PQ ++     +++ VSCG  H V +
Sbjct: 394 LVQFPQALHEKTPVEVLGVSCGANHGVCI 422



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 40/294 (13%)

Query: 96  YAWGGNEYGQCGEEPERKD------DTGRILRRDIVIPQR----CAPKLIVRQVAAGGTH 145
           +AWG   +GQ G   E  +       T ++     + P +      P+L    V  G  H
Sbjct: 38  WAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGLFH 97

Query: 146 SVVLTREGHVWTWGQPWPPGDIKQISV--------PVRVQGLEQVKLIAVGAFHNLALQE 197
           SV+   E  V+ WG+    GD  ++ +        P     +++V++ + G  HN+AL E
Sbjct: 98  SVLFA-EQDVFVWGK----GDGGRLGIDTEFNQYKPYVNPRIKRVQMASAGGLHNIALTE 152

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            G ++ WG   +G LG G  +    P  ++G     +V ++AGG HS A+T+ GE+Y WG
Sbjct: 153 VGNVYTWGYGAFGALGHGSYERELLPRLLEGPWKDRIVHVSAGGSHSAAVTESGELYTWG 212

Query: 258 RGE-HGRLGFGD---NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           R E  GRLG G+    D+ +   P KV  L    I  V CGG  ++ALT+ G ++S+G  
Sbjct: 213 RDEGEGRLGHGNPDIMDEGALSRPTKVQAL-DVPIASVYCGGFFTMALTKSGQLWSWGGN 271

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +  LG+G +    +P  V             ++   + + VACGG H  A+ +
Sbjct: 272 ANHELGHGTRANNWKPKVVA-----------ALEDVTLVQ-VACGGFHAAALTQ 313



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 23/139 (16%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPI--------------PVQGLSG----LTLVDIAAGGW 242
           +WAWG   +GQ+G G       P+              P+QG       L  V +  G +
Sbjct: 37  VWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGLF 96

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           HS    +  +V+ WG+G+ GRLG    D         VN    + +   S GG H++ALT
Sbjct: 97  HSVLFAEQ-DVFVWGKGDGGRLGI---DTEFNQYKPYVNPRI-KRVQMASAGGLHNIALT 151

Query: 303 RDGHIFSFGRGDHGRLGYG 321
             G+++++G G  G LG+G
Sbjct: 152 EVGNVYTWGYGAFGALGHG 170



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 31/132 (23%)

Query: 252 EVYGWGRGEHGRLGFGDNDKS--------------SKMVPQKVNLLAGEDI--VQVSCGG 295
           EV+ WGRG HG++G G  D                + M P +  + A   +  V V+CG 
Sbjct: 36  EVWAWGRGTHGQVGHGSEDTEKLPVLISTLKLAAFTGMAPIQGRMPAKPRLGNVGVTCGL 95

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HSV L  +  +F +G+GD GRLG   +    +P   P              R    ++ 
Sbjct: 96  FHSV-LFAEQDVFVWGKGDGGRLGIDTEFNQYKPYVNP--------------RIKRVQMA 140

Query: 356 ACGGRHTLAIVE 367
           + GG H +A+ E
Sbjct: 141 SAGGLHNIALTE 152


>gi|379721973|ref|YP_005314104.1| hypothetical protein PM3016_4177 [Paenibacillus mucilaginosus 3016]
 gi|378570645|gb|AFC30955.1| hypothetical protein PM3016_4177 [Paenibacillus mucilaginosus 3016]
          Length = 337

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 23/264 (8%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
            ++  + GG    AV   G A+AWG N +GQ G+              D + P +     
Sbjct: 30  SVIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTTY----------DRLTPVQVQGLH 79

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDIKQISVPVRVQGLEQVKLIAVG 188
            V  + AG +HS+ +  +G VW WG  W        G     S PV+VQ L+ V  +A G
Sbjct: 80  SVVALEAGSSHSLAVKADGSVWAWG--WNTYGQLGDGTTDSRSTPVQVQALDSVVAVAAG 137

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
           + H+LA++ DG++WAWG N  GQLG G     + P+ V GL   ++V ++AG   S+AL 
Sbjct: 138 SGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQVTGLG--SVVSVSAGNTFSSALK 195

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DG V+ WG  + G+LG   ++ ++   P  V +        +S G  +S+AL  DG ++
Sbjct: 196 SDGTVWAWGANDSGQLG---SETAASNSPSPVQVTGMASAAAISSGSDYSLALKNDGTVW 252

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEV 332
           ++G    G+LG G   ++  P++V
Sbjct: 253 AWGYNSSGQLGNGTTTSSSAPVQV 276



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 150/328 (45%), Gaps = 39/328 (11%)

Query: 11  GSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI----------------C 54
           GS +  QLG G   +R     VK L+   V  + AG   S A+                 
Sbjct: 4   GSQQHAQLGDGTKTDRYSPIPVKNLD--SVIGISAGGAASFAVRSDGTAWAWGSNLFGQL 61

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            DG T     P QV  L +   ++A  G  H LAV   G  +AWG N YGQ G+      
Sbjct: 62  GDGTTYDRLTPVQVQGLHSVVALEA--GSSHSLAVKADGSVWAWGWNTYGQLGDGTTDSR 119

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
            T          P +      V  VAAG  HS+ +  +G VW WG  W      G   + 
Sbjct: 120 ST----------PVQVQALDSVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTES 169

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           +VPV+V GL  V  ++ G   + AL+ DG +WAWG N+ GQLG+ +T   + P PVQ   
Sbjct: 170 TVPVQVTGLGSVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGS-ETAASNSPSPVQVTG 228

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             +   I++G  +S AL +DG V+ WG    G+LG G    SS   P +V  L    +V 
Sbjct: 229 MASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSS--APVQVTRLG--SVVS 284

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           V+ G  H +A+   G ++ +G   +G+L
Sbjct: 285 VAAGPLHGLAVQSGGTVWDWGNNTYGQL 312



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/218 (37%), Positives = 114/218 (52%), Gaps = 12/218 (5%)

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G +   +   G    R   IP +    +I   ++AGG  S  +  +G  W WG      
Sbjct: 3   LGSQQHAQLGDGTKTDRYSPIPVKNLDSVI--GISAGGAASFAVRSDGTAWAWGSNLFGQ 60

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G       PV+VQGL  V  +  G+ H+LA++ DG++WAWG N YGQLG G T  RS
Sbjct: 61  LGDGTTYDRLTPVQVQGLHSVVALEAGSSHSLAVKADGSVWAWGWNTYGQLGDGTTDSRS 120

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ VQ L   ++V +AAG  HS A+  DG V+ WG    G+LG G   +S+  VP +V 
Sbjct: 121 TPVQVQALD--SVVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYTEST--VPVQVT 176

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            L    +V VS G T S AL  DG ++++G  D G+LG
Sbjct: 177 GLG--SVVSVSAGNTFSSALKSDGTVWAWGANDSGQLG 212



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/277 (33%), Positives = 128/277 (46%), Gaps = 37/277 (13%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI--------------- 53
           AWGS   GQLG G   +R     V+ L  + V ++ AGS +SLA+               
Sbjct: 52  AWGSNLFGQLGDGTTYDRLTPVQVQGL--HSVVALEAGSSHSLAVKADGSVWAWGWNTYG 109

Query: 54  -CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              DG T + + P QV AL +  +V  A G  H LAV   G  +AWG N  GQ G+    
Sbjct: 110 QLGDGTTDSRSTPVQVQALDS--VVAVAAGSGHSLAVKADGSVWAWGANWSGQLGDGTYT 167

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDI 167
           +            +P +      V  V+AG T S  L  +G VW WG     Q       
Sbjct: 168 ES----------TVPVQVTGLGSVVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSETAA 217

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
                PV+V G+     I+ G+ ++LAL+ DG +WAWG N  GQLG G T   S P+ V 
Sbjct: 218 SNSPSPVQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNGTTTSSSAPVQVT 277

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
            L   ++V +AAG  H  A+   G V+ WG   +G+L
Sbjct: 278 RLG--SVVSVAAGPLHGLAVQSGGTVWDWGNNTYGQL 312



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 6/160 (3%)

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P+ V+ L+ V  I+ G   + A++ DG  WAWG+N +GQLG G T  R  P+ VQGL   
Sbjct: 22  PIPVKNLDSVIGISAGGAASFAVRSDGTAWAWGSNLFGQLGDGTTYDRLTPVQVQGLH-- 79

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           ++V + AG  HS A+  DG V+ WG   +G+LG G  D  S+  P +V  L  + +V V+
Sbjct: 80  SVVALEAGSSHSLAVKADGSVWAWGWNTYGQLGDGTTD--SRSTPVQVQAL--DSVVAVA 135

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            G  HS+A+  DG ++++G    G+LG G    +  P++V
Sbjct: 136 AGSGHSLAVKADGSVWAWGANWSGQLGDGTYTESTVPVQV 175



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 101/227 (44%), Gaps = 33/227 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S+ AWG    GQLG G  + R     V+AL+   V +V AGS +SLA+  DG        
Sbjct: 99  SVWAWGWNTYGQLGDGTTDSRSTPVQVQALD--SVVAVAAGSGHSLAVKADGSVWAWGAN 156

Query: 59  --------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T TE+ +P QV  L +  +V  + G     A+   G  +AWG N+ GQ G E
Sbjct: 157 WSGQLGDGTYTESTVPVQVTGLGS--VVSVSAGNTFSSALKSDGTVWAWGANDSGQLGSE 214

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
               +            P +         +++G  +S+ L  +G VW WG         G
Sbjct: 215 TAASNSPS---------PVQVTGMASAAAISSGSDYSLALKNDGTVWAWGYNSSGQLGNG 265

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                S PV+V  L  V  +A G  H LA+Q  G +W WGNN YGQL
Sbjct: 266 TTTSSSAPVQVTRLGSVVSVAAGPLHGLAVQSGGTVWDWGNNTYGQL 312


>gi|313236427|emb|CBY11744.1| unnamed protein product [Oikopleura dioica]
          Length = 516

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 162/344 (47%), Gaps = 38/344 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDGKTKTENIP 65
           +  WGS    QL     E++  +   + L  Y KV S+ AG   + A+  +G T   N  
Sbjct: 131 VFCWGSNSSQQLTDATPEDK--LLYPRNLSVYGKVMSMTAGQYCTFAVLSNG-TVMANGK 187

Query: 66  SQVNALSN------------------TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                L N                   KI+ +     H +A+   G+ + WG  +YG+ G
Sbjct: 188 GSYGRLGNGASASSSSPILIEFPAPVRKILTSKGSDGHSIAIGKNGQIWTWGDGDYGKLG 247

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                   + +++       +  A ++IV     G  HS  +   GH++ WG+       
Sbjct: 248 HGDSTTQKSPKLI-------EALASRVIV-DADCGHRHSAAVCDAGHLYMWGEGDYGRLG 299

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQ 222
            GD  Q SVPV+V  + +   +  G  H + L  DG  +W++G  E G+LG GDT  + +
Sbjct: 300 LGDALQRSVPVQVPDIREASQVVCGFNHTVVLSTDGRTVWSFGAAENGKLGHGDTNRQFR 359

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +  L GLT+  IAAG   S A+T +G +Y WG G    LG G +D++  M+P+ V  
Sbjct: 360 PKIIDALQGLTITQIAAGTQISAAVTREGALYVWGFGPC--LGNGSSDETF-MLPKVVRG 416

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           L+G  ++ ++ G  H VALT+DG +F++G   +G+ G G  + T
Sbjct: 417 LSGRVVIDIAVGENHVVALTKDGLVFTWGNNQNGQCGTGSGMAT 460



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 150/323 (46%), Gaps = 40/323 (12%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSR-NSLAICDDGK--- 58
           S  +++A G G  G+LG G +       +++   P +      GS  +S+AI  +G+   
Sbjct: 178 SNGTVMANGKGSYGRLGNGASASSSSPILIEFPAPVRKILTSKGSDGHSIAIGKNGQIWT 237

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        + T+  P  + AL++  IV A  G  H  AV D G  Y WG  +YG+
Sbjct: 238 WGDGDYGKLGHGDSTTQKSPKLIEALASRVIVDADCGHRHSAAVCDAGHLYMWGEGDYGR 297

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQP--- 161
            G         G  L+R +  P +        QV  G  H+VVL+ +G  VW++G     
Sbjct: 298 LG--------LGDALQRSV--PVQVPDIREASQVVCGFNHTVVLSTDGRTVWSFGAAENG 347

Query: 162 -WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQ-LGTGDT 217
               GD  +   P  +  L+ + +  IA G   + A+  +GAL+ WG   +G  LG G +
Sbjct: 348 KLGHGDTNRQFRPKIIDALQGLTITQIAAGTQISAAVTREGALYVWG---FGPCLGNGSS 404

Query: 218 -QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
            +    P  V+GLSG  ++DIA G  H  ALT DG V+ WG  ++G+ G G    ++   
Sbjct: 405 DETFMLPKVVRGLSGRVVIDIAVGENHVVALTKDGLVFTWGNNQNGQCGTGSG-MATYTS 463

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV 299
           PQ V  L G  I QV+ G TH+ 
Sbjct: 464 PQMVQGLHGAGIQQVTAGTTHTF 486



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V  +  G +   A+  +G + A G   YG+LG G +   S PI ++  + +  +  + G
Sbjct: 162 KVMSMTAGQYCTFAVLSNGTVMANGKGSYGRLGNGASASSSSPILIEFPAPVRKILTSKG 221

Query: 241 G-WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
              HS A+  +G+++ WG G++G+LG GD+  +++  P+ +  LA   IV   CG  HS 
Sbjct: 222 SDGHSIAIGKNGQIWTWGDGDYGKLGHGDS--TTQKSPKLIEALASRVIVDADCGHRHSA 279

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+   GH++ +G GD+GRLG G  +       VP+ +P  R A            V CG 
Sbjct: 280 AVCDAGHLYMWGEGDYGRLGLGDAL----QRSVPVQVPDIREASQ----------VVCGF 325

Query: 360 RHTLAI 365
            HT+ +
Sbjct: 326 NHTVVL 331



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 36/162 (22%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------- 57
           ++G+ E+G+LG G+   +    ++ AL+   +  + AG++ S A+  +G           
Sbjct: 340 SFGAAENGKLGHGDTNRQFRPKIIDALQGLTITQIAAGTQISAAVTREGALYVWGFGPCL 399

Query: 58  ----KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 +T  +P  V  LS   ++  A+G  H +A+   G  + WG N+ GQCG      
Sbjct: 400 GNGSSDETFMLPKVVRGLSGRVVIDIAVGENHVVALTKDGLVFTWGNNQNGQCGTGSGMA 459

Query: 114 DDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVV 148
             T              +P+++       ++QV AG TH+ V
Sbjct: 460 TYT--------------SPQMVQGLHGAGIQQVTAGTTHTFV 487


>gi|309792077|ref|ZP_07686551.1| regulator of chromosome condensation RCC1 [Oscillochloris
           trichoides DG-6]
 gi|308225884|gb|EFO79638.1| regulator of chromosome condensation RCC1 [Oscillochloris
           trichoides DG6]
          Length = 778

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 169/381 (44%), Gaps = 49/381 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           ++  WG   +GQLG G   +R     V  L   +V ++ AG   + A+            
Sbjct: 229 AVTCWGRNGNGQLGDGTTTQRSTPVNVLGLSS-EVAAITAGDVYTCALTTGGGVTCWGAN 287

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   + P  V  LS+  +   A G  H  A+   G    WG N+Y Q G+ 
Sbjct: 288 WSGQLGDGTTDERSTPVDVVGLSS-GVTAIAAGNDHTCAITTGGGVSCWGVNQYSQLGDG 346

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
              +  T  ++     +  R A       +AAG  H+  +T  G V  WG+ W      G
Sbjct: 347 TTTQQSTPVVVNG---LSSRAAA------IAAGDGHTCAMTTGGGVSCWGRNWSGQLGDG 397

Query: 166 DIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
              Q   P++V+GL   V  I  G  H  AL  +G +  WGNNE GQLG G T  RS P+
Sbjct: 398 TTTQRRTPMQVEGLSSGVADITAGDSHTCALSTEGGVTCWGNNESGQLGDGTTIQRSTPV 457

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V+GLS   +V I AG  H+ AL+ +G V  WG    G+LG G   + S   P +V  L+
Sbjct: 458 QVEGLSS-GVVAITAGDSHTCALSTEGGVTCWGGNGSGQLGNGTTTQRST--PVQVEGLS 514

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
              ++ ++ G +H+ ALT  G +  +G   +G+LG G    T     +P+N+    +   
Sbjct: 515 -SGVMAITAGDSHTCALTTGGGVTCWGGNWYGQLGDG----TTTQRNMPVNVVGLSSG-- 567

Query: 345 GVDRRWIAKLVACGGRHTLAI 365
                     +A GG HT A+
Sbjct: 568 -------VAAIAAGGSHTCAL 581



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 156/353 (44%), Gaps = 36/353 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + + +++I WG+ E GQLG G   +R     V  L    V ++ AG  ++ A+       
Sbjct: 71  LTTNSAVICWGNNEFGQLGDGTTIQRNTPVAVNGLSS-GVVAIAAGYAHTCALTTSGGVS 129

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      +G T     P QV  LS+  +   A G +H  A+   G    WG N YG
Sbjct: 130 CWGNNESGQLGNGITIQRRTPVQVAGLSS-GVAAIAAGEYHTCALTTDGAVTCWGSNGYG 188

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+        G   +R   + Q       V  + AGG+H+  LT  G V  WG+    
Sbjct: 189 QLGD--------GTTTQRSTPV-QVAGLSSGVTAITAGGSHTCALTTGGAVTCWGRNGNG 239

Query: 161 PWPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G   Q S PV V GL  +V  I  G  +  AL   G +  WG N  GQLG G T  
Sbjct: 240 QLGDGTTTQRSTPVNVLGLSSEVAAITAGDVYTCALTTGGGVTCWGANWSGQLGDGTTDE 299

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P+ V GLS   +  IAAG  H+ A+T  G V  WG  ++ +L  GD   + +  P  
Sbjct: 300 RSTPVDVVGLSS-GVTAIAAGNDHTCAITTGGGVSCWGVNQYSQL--GDGTTTQQSTPVV 356

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           VN L+      ++ G  H+ A+T  G +  +GR   G+LG G       PM+V
Sbjct: 357 VNGLS-SRAAAIAAGDGHTCAMTTGGGVSCWGRNWSGQLGDGTTTQRRTPMQV 408



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 151/359 (42%), Gaps = 48/359 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           M +   +  WG    GQLG G   +R     V+ L    V  + AG  ++ A+       
Sbjct: 377 MTTGGGVSCWGRNWSGQLGDGTTTQRRTPMQVEGLSS-GVADITAGDSHTCALSTEGGVT 435

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   + P QV  LS+  +V    G  H  A+  +G    WGGN  G
Sbjct: 436 CWGNNESGQLGDGTTIQRSTPVQVEGLSS-GVVAITAGDSHTCALSTEGGVTCWGGNGSG 494

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTHSVVLTREGHVWTW 158
           Q G                    QR  P  +      V  + AG +H+  LT  G V  W
Sbjct: 495 QLGNGTTT---------------QRSTPVQVEGLSSGVMAITAGDSHTCALTTGGGVTCW 539

Query: 159 GQPW----PPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           G  W      G   Q ++PV V GL   V  IA G  H  AL  +G +  WG N Y QLG
Sbjct: 540 GGNWYGQLGDGTTTQRNMPVNVVGLSSGVAAIAAGGSHTCALSTEGGVTCWGWNTYDQLG 599

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            G     + P+ V+GLS   +  IAAG  H+ AL   GEV  WG   +G+L  GD   + 
Sbjct: 600 DGTRTNHNTPVQVEGLSS-GVAAIAAGYAHTCALITSGEVTCWGWNWYGQL--GDGTTTQ 656

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +M P  VN L+ E +  +  G  H+ AL+  G +  +G   + +LG G       PM+V
Sbjct: 657 RMTPVVVNGLSSE-VAAIVAGYAHTCALSTGGGVTCWGWNKYYQLGNGTISQRSIPMDV 714



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 157/349 (44%), Gaps = 36/349 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  WG+ E GQLG G   +R     V+ L    V ++ AG  ++ A+             
Sbjct: 434 VTCWGNNESGQLGDGTTIQRSTPVQVEGLSS-GVVAITAGDSHTCALSTEGGVTCWGGNG 492

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                +G T   + P QV  LS+  ++    G  H  A+   G    WGGN YGQ G+  
Sbjct: 493 SGQLGNGTTTQRSTPVQVEGLSS-GVMAITAGDSHTCALTTGGGVTCWGGNWYGQLGD-- 549

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGD 166
                 G   +R++ +         V  +AAGG+H+  L+ EG V  WG         G 
Sbjct: 550 ------GTTTQRNMPV-NVVGLSSGVAAIAAGGSHTCALSTEGGVTCWGWNTYDQLGDGT 602

Query: 167 IKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               + PV+V+GL   V  IA G  H  AL   G +  WG N YGQLG G T  R  P+ 
Sbjct: 603 RTNHNTPVQVEGLSSGVAAIAAGYAHTCALITSGEVTCWGWNWYGQLGDGTTTQRMTPVV 662

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLS   +  I AG  H+ AL+  G V  WG  ++ +LG G    S + +P  V+ L+ 
Sbjct: 663 VNGLSS-EVAAIVAGYAHTCALSTGGGVTCWGWNKYYQLGNG--TISQRSIPMDVDGLS- 718

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             +  ++ G  H+  L+  G +  +G   +G+LG G       P++V +
Sbjct: 719 SGVAALAAGDAHTCGLSTGGGVTCWGWDVYGQLGVGTIAYRTTPVDVTV 767



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 152/347 (43%), Gaps = 36/347 (10%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           +  WG  +  QLG G   ++    VV  L   +  ++ AG  ++ A+             
Sbjct: 332 VSCWGVNQYSQLGDGTTTQQSTPVVVNGLSS-RAAAIAAGDGHTCAMTTGGGVSCWGRNW 390

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T     P QV  LS+  +     G  H  A+  +G    WG NE GQ G+  
Sbjct: 391 SGQLGDGTTTQRRTPMQVEGLSS-GVADITAGDSHTCALSTEGGVTCWGNNESGQLGD-- 447

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGD 166
                 G  ++R   +        +V  + AG +H+  L+ EG V  WG         G 
Sbjct: 448 ------GTTIQRSTPVQVEGLSSGVVA-ITAGDSHTCALSTEGGVTCWGGNGSGQLGNGT 500

Query: 167 IKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             Q S PV+V+GL   V  I  G  H  AL   G +  WG N YGQLG G T  R+ P+ 
Sbjct: 501 TTQRSTPVQVEGLSSGVMAITAGDSHTCALTTGGGVTCWGGNWYGQLGDGTTTQRNMPVN 560

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GLS   +  IAAGG H+ AL+ +G V  WG   + +L  GD  +++   P +V  L+ 
Sbjct: 561 VVGLSS-GVAAIAAGGSHTCALSTEGGVTCWGWNTYDQL--GDGTRTNHNTPVQVEGLS- 616

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +  ++ G  H+ AL   G +  +G   +G+LG G       P+ V
Sbjct: 617 SGVAAIAAGYAHTCALITSGEVTCWGWNWYGQLGDGTTTQRMTPVVV 663



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/258 (34%), Positives = 123/258 (47%), Gaps = 18/258 (6%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  +  A+        WG NE+GQ G+        G  ++R+  +        +V  +
Sbjct: 62  AAGDAYTCALTTNSAVICWGNNEFGQLGD--------GTTIQRNTPVAVNGLSSGVVA-I 112

Query: 140 AAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLA 194
           AAG  H+  LT  G V  WG         G   Q   PV+V GL   V  IA G +H  A
Sbjct: 113 AAGYAHTCALTTSGGVSCWGNNESGQLGNGITIQRRTPVQVAGLSSGVAAIAAGEYHTCA 172

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  DGA+  WG+N YGQLG G T  RS P+ V GLS   +  I AGG H+ ALT  G V 
Sbjct: 173 LTTDGAVTCWGSNGYGQLGDGTTTQRSTPVQVAGLSS-GVTAITAGGSHTCALTTGGAVT 231

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WGR  +G+L  GD   + +  P  V  L+ E +  ++ G  ++ ALT  G +  +G   
Sbjct: 232 CWGRNGNGQL--GDGTTTQRSTPVNVLGLSSE-VAAITAGDVYTCALTTGGGVTCWGANW 288

Query: 315 HGRLGYGRKVTTGQPMEV 332
            G+LG G       P++V
Sbjct: 289 SGQLGDGTTDERSTPVDV 306


>gi|145593727|ref|YP_001158024.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
 gi|145303064|gb|ABP53646.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
          Length = 567

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 168/392 (42%), Gaps = 47/392 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
           ++AWG  ++GQLG G+         V       V +V AG  +SLA+             
Sbjct: 57  LLAWGKNDNGQLGNGSTTGSNVPIAVSLPLGTTVTAVAAGRFHSLALTSAGTVLAWGTNH 116

Query: 56  -----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG     + P +V+    T +   A GG H +A+   G   AWGGN  GQ G+  
Sbjct: 117 FGQLGDGTLIDRSAPVEVSLPPGTTVTAVAAGGVHSMALTSVGTVLAWGGNGVGQLGD-- 174

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDIK 168
                 G   RR   +       + V  VAA  +HS+ +T  G    WG       GD  
Sbjct: 175 ------GSTTRRTTPVEAILPSGVTVTAVAAAESHSLAVTSAGAALAWGLNGTGQLGDGS 228

Query: 169 QI--SVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            I  S PV V    G E V  IA G  H+LA+   GA  AWG N  GQLG G T  RS P
Sbjct: 229 TINRSTPVSVALPLGTE-VTAIAAGRLHSLAVTSVGAALAWGYNGTGQLGDGTTINRSTP 287

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V    G  +  + AG  HS ALT  G    WG    G+LG G    SS+ V  +V+L 
Sbjct: 288 VSVALPLGAEVTAVVAGRLHSAALTTAGTALAWGDNGFGQLGNGGGSNSSEAV--EVSLP 345

Query: 284 AGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
            G  +  ++   + H++A+  DG   ++G    G+LG G   TT     VP+ +P     
Sbjct: 346 TGTTLAAIASRDSDHTIAIAGDGTALAWGSNIFGQLGDG--TTTNPSTPVPVALP----- 398

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
             G+         A G  HTLA+   Q+  + 
Sbjct: 399 -TGITLLT----TAAGSDHTLALPAQQSRSTT 425


>gi|313236983|emb|CBY12230.1| unnamed protein product [Oikopleura dioica]
          Length = 1048

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 161/336 (47%), Gaps = 57/336 (16%)

Query: 46  GSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
           GS N L  C          PS ++A  N  ++  A G  H + +    + Y+ G NE+GQ
Sbjct: 15  GSENMLISC----------PSPIDA--NQSVISIASGLRHTVYLTSTRKVYSCGSNEFGQ 62

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTW 158
            G++  +                 C P L+       +  VAAG   S+ +   G ++ W
Sbjct: 63  LGQQKSQ-----------------CRPSLVTGFGAEEIFHVAAGDFFSIAIAESGLLFGW 105

Query: 159 GQPWPPGDI--KQISV--PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G+    G++  KQ S+  P  +  +    V  +A GA H +AL E+G + +WG+N  GQL
Sbjct: 106 GRSLN-GELMCKQDSLHEPKLLDKIMHWSVVQVACGAQHCIALTEEGTILSWGSNTQGQL 164

Query: 213 GTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           G G ++    +P  +  L+   +  I AG +HS  L+  G ++ WG+   G+LG G++D 
Sbjct: 165 GLGSSEIEFLEPTIIASLNAFPISQICAGAYHSGVLSPSGTLFTWGKNNWGQLGHGNSD- 223

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           S +  P+ V  L  +++V V+ G  HSV  TR+G +FS+G G +G+LG+       QP +
Sbjct: 224 SFQSSPRLVKTLRHQEVVFVAMGEEHSVCRTRNGGVFSWGHGGNGQLGHNSMANVTQPKK 283

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +          G  V +      + CG RHT+++ +
Sbjct: 284 I------MELMGTTVCQ------ICCGRRHTISLTD 307



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 35/324 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + ST  + + GS E GQLG   ++ R    +V      ++  V AG   S+AI + G   
Sbjct: 46  LTSTRKVYSCGSNEFGQLGQQKSQCRP--SLVTGFGAEEIFHVAAGDFFSIAIAESGLLF 103

Query: 58  ------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                       K  + + P  ++ + +  +VQ A G  HC+A+ ++G   +WG N  GQ
Sbjct: 104 GWGRSLNGELMCKQDSLHEPKLLDKIMHWSVVQVACGAQHCIALTEEGTILSWGSNTQGQ 163

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-WPP 164
            G      +     L   I+      P   + Q+ AG  HS VL+  G ++TWG+  W  
Sbjct: 164 LGLGSSEIE----FLEPTIIASLNAFP---ISQICAGAYHSGVLSPSGTLFTWGKNNWGQ 216

Query: 165 -----GDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                 D  Q S P  V+ L  ++V  +A+G  H++    +G +++WG+   GQLG    
Sbjct: 217 LGHGNSDSFQ-SSPRLVKTLRHQEVVFVAMGEEHSVCRTRNGGVFSWGHGGNGQLGHNSM 275

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM-V 276
              +QP  +  L G T+  I  G  H+ +LTD  ++ G+G   + +LG   ND S+++ +
Sbjct: 276 ANVTQPKKIMELMGTTVCQICCGRRHTISLTDKRKLLGFGLNSNNQLG-THNDTSARLPI 334

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVA 300
              ++L     +  ++ GG  S +
Sbjct: 335 TIPISLTDDRQLSCIAAGGDQSFS 358



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 201 LWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           ++ WG N+YGQLG G +    S P P+   +  +++ IA+G  H+  LT   +VY  G  
Sbjct: 1   MYGWGKNDYGQLGLGSENMLISCPSPID--ANQSVISIASGLRHTVYLTSTRKVYSCGSN 58

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           E G+LG     + S+  P  V     E+I  V+ G   S+A+   G +F +GR  +G L 
Sbjct: 59  EFGQLG----QQKSQCRPSLVTGFGAEEIFHVAAGDFFSIAIAESGLLFGWGRSLNGEL- 113

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             ++ +  +P  +           D +   W    VACG +H +A+ E
Sbjct: 114 MCKQDSLHEPKLL-----------DKI-MHWSVVQVACGAQHCIALTE 149


>gi|428164909|gb|EKX33919.1| hypothetical protein GUITHDRAFT_166344 [Guillardia theta CCMP2712]
          Length = 784

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 134/259 (51%), Gaps = 23/259 (8%)

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI 170
           ++  D   +  +D+V      P+++  Q  A    + VLT++  +       P G   + 
Sbjct: 154 DKASDMQCMKPQDVVWGSASQPQIV--QTVASVDSTFVLTKQEML-----ARPDGKYFR- 205

Query: 171 SVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           SVP+ +  ++ +  +  A G FH +AL + G +W+WGNN  GQLG GD   RSQP  V  
Sbjct: 206 SVPMLINSIQDLHFLELAAGDFHVIALNDLGEVWSWGNNVEGQLGVGDLSQRSQPAKVVY 265

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           + GL  V +AAG +HS  LTD G+VY  G   +G+LG G  D SS+  P  +  LA ++I
Sbjct: 266 MDGLNTVKVAAGSYHSLVLTDFGQVYSMGLNANGQLGLG--DYSSRKAPTLIKYLATKNI 323

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
             ++CG   S A++  G +F++G    G+LG    VT  +P      IP+ +N G  V +
Sbjct: 324 SSIACGDYASYAISDAGEVFAWGDNSFGQLGQSAAVTYNEPSL----IPSLKNDGANVYK 379

Query: 349 RWIAKLVACGGRHTLAIVE 367
            +       GG+ T+  ++
Sbjct: 380 VF-------GGQRTIFAID 391



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 151/354 (42%), Gaps = 46/354 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG    GQLG+G         +  +L P  V+       NS  +C+    K      
Sbjct: 86  VYTWGRNSKGQLGLGP--------IWTSLSPQAVQWKACPEPNSW-VCNPSLCK------ 130

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDD-------QGRAYAWGGNEYGQCGEEPERKDDTGRI 119
            V   S      +A   W  L VD        + +   WG     Q  +     D T  +
Sbjct: 131 PVCDASKCTSYGSANSYWKVLGVDKASDMQCMKPQDVVWGSASQPQIVQTVASVDSTFVL 190

Query: 120 LRRDIVI-PQ----RCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
            +++++  P     R  P LI         ++AAG  H + L   G VW+WG        
Sbjct: 191 TKQEMLARPDGKYFRSVPMLINSIQDLHFLELAAGDFHVIALNDLGEVWSWGNNVEGQLG 250

Query: 164 PGDIKQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD+ Q S P +V    GL  VK +A G++H+L L + G +++ G N  GQLG GD   R
Sbjct: 251 VGDLSQRSQPAKVVYMDGLNTVK-VAAGSYHSLVLTDFGQVYSMGLNANGQLGLGDYSSR 309

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGDNDKSSKMVPQ 278
             P  ++ L+   +  IA G + S A++D GEV+ WG    G+LG           ++P 
Sbjct: 310 KAPTLIKYLATKNISSIACGDYASYAISDAGEVFAWGDNSFGQLGQSAAVTYNEPSLIPS 369

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             N   G ++ +V  G     A+   G +++FG  D+G LG G K T   P ++
Sbjct: 370 LKN--DGANVYKVFGGQRTIFAIDESGIVYAFGNNDYGMLGLGDKTTRKFPTKI 421



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 127/256 (49%), Gaps = 21/256 (8%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKD 114
           DGK    ++P  +N++ +   ++ A G +H +A++D G  ++WG N  GQ G  +  ++ 
Sbjct: 200 DGK-YFRSVPMLINSIQDLHFLELAAGDFHVIALNDLGEVWSWGNNVEGQLGVGDLSQRS 258

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
              +++  D          L   +VAAG  HS+VLT  G V++ G         GD    
Sbjct: 259 QPAKVVYMD---------GLNTVKVAAGSYHSLVLTDFGQVYSMGLNANGQLGLGDYSSR 309

Query: 171 SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP--IPV 226
             P  ++ L  + +  IA G + + A+ + G ++AWG+N +GQLG       ++P  IP 
Sbjct: 310 KAPTLIKYLATKNISSIACGDYASYAISDAGEVFAWGDNSFGQLGQSAAVTYNEPSLIPS 369

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
               G  +  +  G     A+ + G VY +G  ++G LG G  DK+++  P K++   G 
Sbjct: 370 LKNDGANVYKVFGGQRTIFAIDESGIVYAFGNNDYGMLGLG--DKTTRKFPTKISSFVGA 427

Query: 287 DIVQVSCGGTHSVALT 302
           ++  ++ G  H++A T
Sbjct: 428 NVYVIASGAYHTIAAT 443



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 31/220 (14%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI---- 64
           +WG+  +GQLG+G+  +R     V  ++      V AGS +SL + D G+  +  +    
Sbjct: 240 SWGNNVEGQLGVGDLSQRSQPAKVVYMDGLNTVKVAAGSYHSLVLTDFGQVYSMGLNANG 299

Query: 65  ------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                       P+ +  L+   I   A G +   A+ D G  +AWG N +GQ G+    
Sbjct: 300 QLGLGDYSSRKAPTLIKYLATKNISSIACGDYASYAISDAGEVFAWGDNSFGQLGQS--- 356

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIK 168
                       +IP        V +V  G      +   G V+ +G         GD  
Sbjct: 357 ---AAVTYNEPSLIPSLKNDGANVYKVFGGQRTIFAIDESGIVYAFGNNDYGMLGLGDKT 413

Query: 169 QISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGN 206
               P ++       V +IA GA+H +A       W  GN
Sbjct: 414 TRKFPTKISSFVGANVYVIASGAYHTIAAT---GCWEQGN 450



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 17/97 (17%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS------QPIPVQGLSGLTL 234
            +  +++  F ++    D  ++  G N++GQLG GD   R+        +P+    GL  
Sbjct: 11  SIACLSLACFFDVVAAND--VYVVGYNDWGQLGLGDYLERTTETLIDSKLPLDRTYGL-- 66

Query: 235 VDIAAGGWHSTALTD----DGEVYGWGRGEHGRLGFG 267
              AAG +HS AL D     G VY WGR   G+LG G
Sbjct: 67  ---AAGLYHSVALGDTSSTQGLVYTWGRNSKGQLGLG 100


>gi|281344276|gb|EFB19860.1| hypothetical protein PANDA_001439 [Ailuropoda melanoleuca]
          Length = 993

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 122/239 (51%), Gaps = 29/239 (12%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK---LIAVGA 189
           K+ +  V  G  H ++L+ +G          P +        R Q + Q K    IA G 
Sbjct: 65  KMKIHSVDQGAEHMLILSSDG---------KPFEYNYSIEHARFQCILQEKSIIQIACGD 115

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTAL 247
           +H+LAL + G L+AWG N +GQLG G     S P P  V+ LSG+ LV I+AG  HS AL
Sbjct: 116 YHSLALSKGGELFAWGQNLHGQLGVGRLFA-SIPTPQAVEHLSGVPLVQISAGKAHSMAL 174

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +  G VY WGR + G+LG G  D      P  +  L  + +  ++CGG+H+  LT DG +
Sbjct: 175 SMSGNVYSWGRNDLGQLGLGHTDGED--FPSLIETLDNQQVEFLACGGSHTALLTTDGLV 232

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           F+FG G +G+LG+       +P  V         AG+ V +      +ACG RHTLA V
Sbjct: 233 FTFGAGKYGQLGHNSTQNELRPRLVT------ELAGNRVTQ------IACGRRHTLAYV 279



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 14/212 (6%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKL--IAV 187
           + Q+A G  HS+ L++ G ++ WGQ    G +        I  P  V+ L  V L  I+ 
Sbjct: 108 IIQIACGDYHSLALSKGGELFAWGQNLH-GQLGVGRLFASIPTPQAVEHLSGVPLVQISA 166

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H++AL   G +++WG N+ GQLG G T     P  ++ L    +  +A GG H+  L
Sbjct: 167 GKAHSMALSMSGNVYSWGRNDLGQLGLGHTDGEDFPSLIETLDNQQVEFLACGGSHTALL 226

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GH 306
           T DG V+ +G G++G+L  G N   +++ P+ V  LAG  + Q++CG  H++A   D G 
Sbjct: 227 TTDGLVFTFGAGKYGQL--GHNSTQNELRPRLVTELAGNRVTQIACGRRHTLAYVSDLGK 284

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           +FSFG G  G+LG G   T  Q + +P+ +P+
Sbjct: 285 VFSFGSGKEGQLGNGG--THNQLIPLPMKLPS 314



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 35/282 (12%)

Query: 27  EWVC---VVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQ----VNALSNTKIVQA 79
           +W+C    VK  +  K+ SV  G+ + L +  DGK    N   +       L    I+Q 
Sbjct: 52  DWICSAECVKLGKKMKIHSVDQGAEHMLILSSDGKPFEYNYSIEHARFQCILQEKSIIQI 111

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVR 137
           A G +H LA+   G  +AWG N +GQ G         GR+    I  PQ       + + 
Sbjct: 112 ACGDYHSLALSKGGELFAWGQNLHGQLG--------VGRLF-ASIPTPQAVEHLSGVPLV 162

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAV 187
           Q++AG  HS+ L+  G+V++WG+     D+ Q+          P  ++ L  +QV+ +A 
Sbjct: 163 QISAGKAHSMALSMSGNVYSWGR----NDLGQLGLGHTDGEDFPSLIETLDNQQVEFLAC 218

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H   L  DG ++ +G  +YGQLG   TQ   +P  V  L+G  +  IA G  H+ A 
Sbjct: 219 GGSHTALLTTDGLVFTFGAGKYGQLGHNSTQNELRPRLVTELAGNRVTQIACGRRHTLAY 278

Query: 248 TDD-GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
             D G+V+ +G G+ G+LG G     ++++P  + L + E++
Sbjct: 279 VSDLGKVFSFGSGKEGQLGNGGT--HNQLIPLPMKLPSNEEL 318



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + ++ +WG  + GQLG+G+ +  ++  +++ L+  +V  +  G  ++  +  DG   
Sbjct: 174 LSMSGNVYSWGRNDLGQLGLGHTDGEDFPSLIETLDNQQVEFLACGGSHTALLTTDGLVF 233

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G  H LA V D G+ +++G  + 
Sbjct: 234 TFGAGKYGQLGHNSTQNELRPRLVTELAGNRVTQIACGRRHTLAYVSDLGKVFSFGSGKE 293

Query: 104 GQCG 107
           GQ G
Sbjct: 294 GQLG 297


>gi|170578406|ref|XP_001894395.1| hypothetical protein [Brugia malayi]
 gi|158599034|gb|EDP36761.1| conserved hypothetical protein [Brugia malayi]
          Length = 988

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 158/342 (46%), Gaps = 41/342 (11%)

Query: 7   IIAWGSGEDGQLGI--GNNEEREWVCVVKAL---EPYK-----VRSVVAGSRNSLAICDD 56
           +  +G   DGQLG    + E    + +V  L    P +     V+S+ +G R++L + DD
Sbjct: 6   LYVFGCAGDGQLGFRPDSVESDAQMMIVPRLVYGAPTRQNGVIVKSIASGERHTLFLSDD 65

Query: 57  GKT-----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
           GK                  +       V+  S   I+Q + G  H +AV D GR +AWG
Sbjct: 66  GKVWSCGSNYNGELGRGGVREGSYTIYPVHISSTVSIIQISAGRSHSMAVSDDGRLFAWG 125

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            N +GQ          +G IL  D   P+R        QVA G +H+V L   G V+ WG
Sbjct: 126 SNSHGQLAM-------SGDILASD--TPKRVPSLPETVQVACGASHTVSLNGGGRVFIWG 176

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           Q    G I+     V +     +  I+ G    +AL   G L+AWG NE GQLG    + 
Sbjct: 177 QQ-SDGRIRHSPAEVEIFISIPIVQISAGNLFTMALTASGTLFAWGKNEEGQLGDFTNKD 235

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
              P  V  ++  ++V +  G  HS ALT +G V+  G    G+LG G  ++S   + + 
Sbjct: 236 VVNPCAVPNIN--SVVAVECGDSHSIALTHEGRVFSCGSDSFGQLGCGQPNRSQNCM-RG 292

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           +  + G  + +++CG  H++ +  +G + +FG   +G+LG+G
Sbjct: 293 ITEMLGSHVTRIACGRCHTIVVA-NGKMHTFGLNSNGQLGHG 333



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 36/292 (12%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  H L + D G+ ++ G N  G+ G    R+           + P   +  + + Q+
Sbjct: 53  ASGERHTLFLSDDGKVWSCGSNYNGELGRGGVREGSYT-------IYPVHISSTVSIIQI 105

Query: 140 AAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           +AG +HS+ ++ +G ++ WG     Q    GDI     P RV  L +   +A GA H ++
Sbjct: 106 SAGRSHSMAVSDDGRLFAWGSNSHGQLAMSGDILASDTPKRVPSLPETVQVACGASHTVS 165

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L   G ++ WG    G++       R  P  V+    + +V I+AG   + ALT  G ++
Sbjct: 166 LNGGGRVFIWGQQSDGRI-------RHSPAEVEIFISIPIVQISAGNLFTMALTASGTLF 218

Query: 255 GWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
            WG+ E G+LG F + D  +      +N      +V V CG +HS+ALT +G +FS G  
Sbjct: 219 AWGKNEEGQLGDFTNKDVVNPCAVPNIN-----SVVAVECGDSHSIALTHEGRVFSCGSD 273

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG G+   +   M            G  V R      +ACG  HT+ +
Sbjct: 274 SFGQLGCGQPNRSQNCMR-----GITEMLGSHVTR------IACGRCHTIVV 314



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 93/168 (55%), Gaps = 12/168 (7%)

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI-PVQGLSG 231
           P R  G+  VK IA G  H L L +DG +W+ G+N  G+LG G  +  S  I PV   S 
Sbjct: 41  PTRQNGV-IVKSIASGERHTLFLSDDGKVWSCGSNYNGELGRGGVREGSYTIYPVHISST 99

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           ++++ I+AG  HS A++DDG ++ WG   HG+L    +  +S   P++V  L   + VQV
Sbjct: 100 VSIIQISAGRSHSMAVSDDGRLFAWGSNSHGQLAMSGDILASD-TPKRVPSLP--ETVQV 156

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +CG +H+V+L   G +F +G+   GR+ +        P EV I I  P
Sbjct: 157 ACGASHTVSLNGGGRVFIWGQQSDGRIRHS-------PAEVEIFISIP 197



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 52/245 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS------VVAGSRNSLAICDDGKT- 59
           + AWGS   GQL +  +       ++ +  P +V S      V  G+ +++++   G+  
Sbjct: 121 LFAWGSNSHGQLAMSGD-------ILASDTPKRVPSLPETVQVACGASHTVSLNGGGRVF 173

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   +  + P++V    +  IVQ + G    +A+   G  +AWG NE GQ G+   
Sbjct: 174 IWGQQSDGRIRHSPAEVEIFISIPIVQISAGNLFTMALTASGTLFAWGKNEEGQLGD--- 230

Query: 112 RKDDTGRILRRDIVIPQRCAPKLI--VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                     +D+V P  CA   I  V  V  G +HS+ LT EG V++ G         Q
Sbjct: 231 -------FTNKDVVNP--CAVPNINSVVAVECGDSHSIALTHEGRVFSCGS----DSFGQ 277

Query: 170 ISV--PVRVQGL---------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
           +    P R Q             V  IA G  H + +  +G +  +G N  GQLG G+T+
Sbjct: 278 LGCGQPNRSQNCMRGITEMLGSHVTRIACGRCHTIVVA-NGKMHTFGLNSNGQLGHGNTR 336

Query: 219 PRSQP 223
            +  P
Sbjct: 337 NQITP 341



 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 22/139 (15%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
           MA T S  + AWG  E+GQLG   N++    C V  +    V +V  G  +S+A+  +G+
Sbjct: 209 MALTASGTLFAWGKNEEGQLGDFTNKDVVNPCAVPNIN--SVVAVECGDSHSIALTHEGR 266

Query: 59  T-----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                             +++N    +  +  + + + A G  H + V + G+ + +G N
Sbjct: 267 VFSCGSDSFGQLGCGQPNRSQNCMRGITEMLGSHVTRIACGRCHTIVVAN-GKMHTFGLN 325

Query: 102 EYGQCGEEPERKDDTGRIL 120
             GQ G    R   T R++
Sbjct: 326 SNGQLGHGNTRNQITPRVI 344


>gi|330796442|ref|XP_003286276.1| hypothetical protein DICPUDRAFT_17436 [Dictyostelium purpureum]
 gi|325083781|gb|EGC37225.1| hypothetical protein DICPUDRAFT_17436 [Dictyostelium purpureum]
          Length = 423

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 20/270 (7%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC--GEEPERKDDTGRILRR 122
           P ++  L N  I+  + G  H +   D+G  ++WG ++ GQ   GE      D      +
Sbjct: 121 PKRIETLKNRNIISLSSGYEHSIVTTDKG-LFSWGRSDKGQLANGELKSEIKDQINYSSK 179

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQG 178
              I    +    +++V +G  HS+VL ++G V++WG  +      G    ++ P ++Q 
Sbjct: 180 PQFIKNSDSTFRNIKKVCSGSDHSLVLNKDGTVYSWGHGYFGATGLGKKDNVATPTKIQF 239

Query: 179 LEQV--KL---IAVGAFHNLALQEDGALWAWGNNEYGQLG--TGDTQPRSQPIPVQGLSG 231
            +++  KL   IA G +H+L L  D  ++++G  EYGQLG    DT+    P  ++ ++ 
Sbjct: 240 NKELENKLVLDIACGGYHSLILTSDNEIYSFGWGEYGQLGHSENDTKNYYSPKKIESINS 299

Query: 232 LTLVDIAAGGWHSTALTDD--GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            T +     G H+T+   D  G+VY WG GE G LGFGDN   +  VP +V  L+  +I 
Sbjct: 300 STKIKSVFAGSHATSFYVDEKGDVYSWGWGEGGTLGFGDN--QNVYVPTQVKSLS--NIK 355

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           +++ G  H++ALT D  ++ FG    G+LG
Sbjct: 356 KIAAGFKHTLALTNDNQVYVFGDNTFGQLG 385



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 46/311 (14%)

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIV 136
           A++GG   L +      Y+ G   YG  G + E KD          V P+R        +
Sbjct: 81  ASLGGNFILMLTIDNDLYSMGKGSYGVLGLDKEMKDLE--------VEPKRIETLKNRNI 132

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIK-----QISVPVRVQGLEQ------ 181
             +++G  HS+V T +G +++WG+        G++K     QI+   + Q ++       
Sbjct: 133 ISLSSGYEHSIVTTDKG-LFSWGRSDKGQLANGELKSEIKDQINYSSKPQFIKNSDSTFR 191

Query: 182 -VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG---LSGLTLVDI 237
            +K +  G+ H+L L +DG +++WG+  +G  G G     + P  +Q    L    ++DI
Sbjct: 192 NIKKVCSGSDHSLVLNKDGTVYSWGHGYFGATGLGKKDNVATPTKIQFNKELENKLVLDI 251

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A GG+HS  LT D E+Y +G GE+G+LG  +ND  +   P+K+  +     ++    G+H
Sbjct: 252 ACGGYHSLILTSDNEIYSFGWGEYGQLGHSENDTKNYYSPKKIESINSSTKIKSVFAGSH 311

Query: 298 SVALTRD--GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           + +   D  G ++S+G G+ G LG+G      Q + VP  + +  N           K +
Sbjct: 312 ATSFYVDEKGDVYSWGWGEGGTLGFGD----NQNVYVPTQVKSLSN----------IKKI 357

Query: 356 ACGGRHTLAIV 366
           A G +HTLA+ 
Sbjct: 358 AAGFKHTLALT 368



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 140/303 (46%), Gaps = 48/303 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA---GSRNSLAICD-------- 55
           + + G G  G LG+ + E ++     K +E  K R++++   G  +S+   D        
Sbjct: 97  LYSMGKGSYGVLGL-DKEMKDLEVEPKRIETLKNRNIISLSSGYEHSIVTTDKGLFSWGR 155

Query: 56  -------DGKTKTENIPSQVNALSNTKIVQAA-----------IGGWHCLAVDDQGRAYA 97
                  +G+ K+E I  Q+N  S  + ++ +            G  H L ++  G  Y+
Sbjct: 156 SDKGQLANGELKSE-IKDQINYSSKPQFIKNSDSTFRNIKKVCSGSDHSLVLNKDGTVYS 214

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG   +G  G    +KD+     +  I   +    KL++  +A GG HS++LT +  +++
Sbjct: 215 WGHGYFGATG--LGKKDNVATPTK--IQFNKELENKLVL-DIACGGYHSLILTSDNEIYS 269

Query: 158 --WGQPWPPG----DIKQISVPVRVQGLE---QVKLIAVGAF-HNLALQEDGALWAWGNN 207
             WG+    G    D K    P +++ +    ++K +  G+   +  + E G +++WG  
Sbjct: 270 FGWGEYGQLGHSENDTKNYYSPKKIESINSSTKIKSVFAGSHATSFYVDEKGDVYSWGWG 329

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           E G LG GD Q    P  V+ LS +    IAAG  H+ ALT+D +VY +G    G+LG  
Sbjct: 330 EGGTLGFGDNQNVYVPTQVKSLSNIK--KIAAGFKHTLALTNDNQVYVFGDNTFGQLGSK 387

Query: 268 DND 270
            N+
Sbjct: 388 QNN 390



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 49/226 (21%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++ +WG G  G  G+G  +            P K+                         
Sbjct: 211 TVYSWGHGYFGATGLGKKD--------NVATPTKI------------------------- 237

Query: 66  SQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
            Q N  L N  ++  A GG+H L +      Y++G  EYGQ G     ++DT        
Sbjct: 238 -QFNKELENKLVLDIACGGYHSLILTSDNEIYSFGWGEYGQLG---HSENDTKNYYSPKK 293

Query: 125 VIPQRCAPKLIVRQVAAGG-THSVVLTREGHVWTWGQPWPP------GDIKQISVPVRVQ 177
           +     + K  ++ V AG    S  +  +G V++WG  W        GD + + VP +V+
Sbjct: 294 IESINSSTK--IKSVFAGSHATSFYVDEKGDVYSWG--WGEGGTLGFGDNQNVYVPTQVK 349

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            L  +K IA G  H LAL  D  ++ +G+N +GQLG+        P
Sbjct: 350 SLSNIKKIAAGFKHTLALTNDNQVYVFGDNTFGQLGSKQNNVFEDP 395



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 52/190 (27%)

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW--------------------------- 256
           +P + L  +T  DI A  +HS  L D  E Y W                           
Sbjct: 21  LPTK-LLNITATDIFASAYHSALLNDKNEFYHWGLFSNIVSEAPNVIEIKDNNKKNNKIK 79

Query: 257 ---------------------GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
                                G+G +G LG     K  ++ P+++  L   +I+ +S G 
Sbjct: 80  DASLGGNFILMLTIDNDLYSMGKGSYGVLGLDKEMKDLEVEPKRIETLKNRNIISLSSGY 139

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HS+  T  G +FS+GR D G+L  G   +  +      + P      D   R    K V
Sbjct: 140 EHSIVTTDKG-LFSWGRSDKGQLANGELKSEIKDQINYSSKPQFIKNSDSTFRN--IKKV 196

Query: 356 ACGGRHTLAI 365
             G  H+L +
Sbjct: 197 CSGSDHSLVL 206


>gi|301755556|ref|XP_002913645.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC5-like
           [Ailuropoda melanoleuca]
          Length = 1035

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 122/239 (51%), Gaps = 29/239 (12%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK---LIAVGA 189
           K+ +  V  G  H ++L+ +G          P +        R Q + Q K    IA G 
Sbjct: 108 KMKIHSVDQGAEHMLILSSDG---------KPFEYNYSIEHARFQCILQEKSIIQIACGD 158

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTAL 247
           +H+LAL + G L+AWG N +GQLG G     S P P  V+ LSG+ LV I+AG  HS AL
Sbjct: 159 YHSLALSKGGELFAWGQNLHGQLGVGRLFA-SIPTPQAVEHLSGVPLVQISAGKAHSMAL 217

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +  G VY WGR + G+LG G  D      P  +  L  + +  ++CGG+H+  LT DG +
Sbjct: 218 SMSGNVYSWGRNDLGQLGLGHTDGED--FPSLIETLDNQQVEFLACGGSHTALLTTDGLV 275

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           F+FG G +G+LG+       +P  V         AG+ V +      +ACG RHTLA V
Sbjct: 276 FTFGAGKYGQLGHNSTQNELRPRLVT------ELAGNRVTQ------IACGRRHTLAYV 322



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 116/212 (54%), Gaps = 14/212 (6%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKL--IAV 187
           + Q+A G  HS+ L++ G ++ WGQ    G +        I  P  V+ L  V L  I+ 
Sbjct: 151 IIQIACGDYHSLALSKGGELFAWGQNLH-GQLGVGRLFASIPTPQAVEHLSGVPLVQISA 209

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H++AL   G +++WG N+ GQLG G T     P  ++ L    +  +A GG H+  L
Sbjct: 210 GKAHSMALSMSGNVYSWGRNDLGQLGLGHTDGEDFPSLIETLDNQQVEFLACGGSHTALL 269

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GH 306
           T DG V+ +G G++G+L  G N   +++ P+ V  LAG  + Q++CG  H++A   D G 
Sbjct: 270 TTDGLVFTFGAGKYGQL--GHNSTQNELRPRLVTELAGNRVTQIACGRRHTLAYVSDLGK 327

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           +FSFG G  G+LG G   T  Q + +P+ +P+
Sbjct: 328 VFSFGSGKEGQLGNGG--THNQLIPLPMKLPS 357



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 32/274 (11%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVN----ALSNTKIVQAAIGGWHCL 87
           VK  +  K+ SV  G+ + L +  DGK    N   +       L    I+Q A G +H L
Sbjct: 103 VKLGKKMKIHSVDQGAEHMLILSSDGKPFEYNYSIEHARFQCILQEKSIIQIACGDYHSL 162

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTH 145
           A+   G  +AWG N +GQ G         GR+    I  PQ       + + Q++AG  H
Sbjct: 163 ALSKGGELFAWGQNLHGQLG--------VGRLF-ASIPTPQAVEHLSGVPLVQISAGKAH 213

Query: 146 SVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLAL 195
           S+ L+  G+V++WG+     D+ Q+          P  ++ L  +QV+ +A G  H   L
Sbjct: 214 SMALSMSGNVYSWGR----NDLGQLGLGHTDGEDFPSLIETLDNQQVEFLACGGSHTALL 269

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVY 254
             DG ++ +G  +YGQLG   TQ   +P  V  L+G  +  IA G  H+ A   D G+V+
Sbjct: 270 TTDGLVFTFGAGKYGQLGHNSTQNELRPRLVTELAGNRVTQIACGRRHTLAYVSDLGKVF 329

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            +G G+ G+LG G     ++++P  + L + E++
Sbjct: 330 SFGSGKEGQLGNGGT--HNQLIPLPMKLPSNEEL 361



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + ++ +WG  + GQLG+G+ +  ++  +++ L+  +V  +  G  ++  +  DG   
Sbjct: 217 LSMSGNVYSWGRNDLGQLGLGHTDGEDFPSLIETLDNQQVEFLACGGSHTALLTTDGLVF 276

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G  H LA V D G+ +++G  + 
Sbjct: 277 TFGAGKYGQLGHNSTQNELRPRLVTELAGNRVTQIACGRRHTLAYVSDLGKVFSFGSGKE 336

Query: 104 GQCG 107
           GQ G
Sbjct: 337 GQLG 340


>gi|348525468|ref|XP_003450244.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like
           [Oreochromis niloticus]
          Length = 536

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 127/242 (52%), Gaps = 26/242 (10%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLI 185
           K IV      G H V+ T +G V+ WG         G       P  V      ++V  +
Sbjct: 83  KKIVSLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTNLLSKRVTEV 142

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---TLVDIAAGGW 242
           A G+ H +AL  DG ++AWG N  GQ+G+G T   +QP P +  S L    +V+IA G  
Sbjct: 143 ACGSHHTIALTTDGEVYAWGYNNSGQVGSGSTA--NQPTPRRVSSCLQNKVVVNIACGQL 200

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            S A+ D+GE+YGWG   +G+LG G+N   ++  P ++  L G +IVQV+CG  H++ALT
Sbjct: 201 CSMAVLDNGEIYGWGYNCNGQLGLGNN--GNQQTPCRIAALQGVNIVQVACGYAHTLALT 258

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            +G ++++G   +G+LG G K  + Q +  PIN           D+  I ++ AC   HT
Sbjct: 259 DEGFVYAWGANSYGQLGTGNK--SNQALPTPIN----------TDKERIVEVAACHTSHT 306

Query: 363 LA 364
            A
Sbjct: 307 SA 308



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 129/258 (50%), Gaps = 20/258 (7%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ L   KIV  + G G H +     G  YAWG N Y Q G        T  ++  +
Sbjct: 74  PRRIDVLCGKKIVSLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTN 133

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL 179
           ++  +       V +VA G  H++ LT +G V+ WG         G       P RV   
Sbjct: 134 LLSKR-------VTEVACGSHHTIALTTDGEVYAWGYNNSGQVGSGSTANQPTPRRVSSC 186

Query: 180 EQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q K+   IA G   ++A+ ++G ++ WG N  GQLG G+   +  P  +  L G+ +V 
Sbjct: 187 LQNKVVVNIACGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNGNQQTPCRIAALQGVNIVQ 246

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-SCGG 295
           +A G  H+ ALTD+G VY WG   +G+LG G  +KS++ +P  +N    E IV+V +C  
Sbjct: 247 VACGYAHTLALTDEGFVYAWGANSYGQLGTG--NKSNQALPTPIN-TDKERIVEVAACHT 303

Query: 296 TH-SVALTRDGHIFSFGR 312
           +H S A T+ G +  +G+
Sbjct: 304 SHTSAAKTQSGQVLMWGQ 321



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 19/208 (9%)

Query: 165 GDIKQISVPVRVQGLEQVKLIAVG---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           GD++    P R+  L   K++++      H +    DG ++AWG+N Y QLG G T    
Sbjct: 66  GDLQSTIEPRRIDVLCGKKIVSLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGL 125

Query: 222 QPIPVQ-GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  V   L    + ++A G  H+ ALT DGEVY WG    G++G G    +++  P++V
Sbjct: 126 TPALVSTNLLSKRVTEVACGSHHTIALTTDGEVYAWGYNNSGQVGSGST--ANQPTPRRV 183

Query: 281 N-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +  L  + +V ++CG   S+A+  +G I+ +G   +G+LG G       P  +       
Sbjct: 184 SSCLQNKVVVNIACGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNGNQQTPCRIA------ 237

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             A  GV+   I + VACG  HTLA+ +
Sbjct: 238 --ALQGVN---IVQ-VACGYAHTLALTD 259



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   +  +  P  ++ + Q  +    A   L +  +  ++A G N  G LG GD Q   
Sbjct: 16  WP---VFALLPPEELRLIRQACVFGSAANEALYVTVNDEVFALGTNCSGCLGLGDLQSTI 72

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  L G  +V ++ G G H    T DGEVY WG   + +LG G  +          
Sbjct: 73  EPRRIDVLCGKKIVSLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVST 132

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL+ + + +V+CG  H++ALT DG ++++G  + G++G G             N P PR
Sbjct: 133 NLLS-KRVTEVACGSHHTIALTTDGEVYAWGYNNSGQVGSGSTA----------NQPTPR 181

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +  + +   +ACG   ++A+++
Sbjct: 182 RVSSCLQNKVVVN-IACGQLCSMAVLD 207



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D+G+       
Sbjct: 158 VYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGEIYGWGYN 217

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL    IVQ A G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 218 CNGQLGLGNNGNQQTPCRIAALQGVNIVQVACGYAHTLALTDEGFVYAWGANSYGQLG-- 275

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
                 TG    + +  P     + IV   A   +H S   T+ G V  WGQ
Sbjct: 276 ------TGNKSNQALPTPINTDKERIVEVAACHTSHTSAAKTQSGQVLMWGQ 321


>gi|224061683|ref|XP_002192615.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Taeniopygia
            guttata]
          Length = 4864

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R+++IP         +QV  G   + V+   G V
Sbjct: 4003 YLWGAGRHGQLAEA-----------GRNVMIPAAAPSFSPAQQVVCGQNCTFVIQANGTV 4051

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4052 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4111

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4112 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGL 4171

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H+VA++ DG  +++FG GD+G+LG G    
Sbjct: 4172 GNT--SNKKLPERVTALEGYQIGQVACGLNHTVAVSTDGSMVWAFGDGDYGKLGLGNSTA 4229

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V I        G G+      K VACG + ++A+ +
Sbjct: 4230 KSSPQKVDI------LCGIGI------KKVACGTQFSVALTK 4259



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4050 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4084

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4085 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4136

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4137 EEVV-----------QMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4185

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H +A+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4186 LEGYQIGQVACGLNHTVAVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCGIGIK 4245

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V LLAG  I  ++ G 
Sbjct: 4246 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPLLAGVFIEDIAVGA 4303

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL+  G ++++G    G+LG G      +P  V +
Sbjct: 4304 EHTLALSSTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4342



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  + G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4033 QQVVCGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4085

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4086 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4145

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4146 FKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTVAVS 4205

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4206 TDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDILCGIGIKKVACGTQFSVALTKDGHV 4263

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P +VP+       AG  ++       +A G  HTLA+
Sbjct: 4264 YTFGQDRLIGLPEGRARNHNRPQQVPL------LAGVFIED------IAVGAEHTLAL 4309



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 179/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLASSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDIINVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P      DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVGGLDGIAIQQI----SAGTSHSLA 732



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  + N  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDIIN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVGGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4098 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 4157

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H +AV   G   +A+G  
Sbjct: 4158 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTVAVSTDGSMVWAFGDG 4217

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + DI+    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4218 DYGKLGLGNSTAKSSPQ--KVDIL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4269

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  IAVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4270 RLIGLPEGRARNHNRPQQVPLLAGVFIEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGLG 4329

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4330 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4362



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP      + V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDIINVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV  L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVGGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|145594132|ref|YP_001158429.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
 gi|145303469|gb|ABP54051.1| regulator of chromosome condensation, RCC1 [Salinispora tropica
           CNB-440]
          Length = 570

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 132/292 (45%), Gaps = 16/292 (5%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+     DG T   N P  V+  + T       G +H LA+   G   AWG N+ GQ G+
Sbjct: 65  NAFGQLGDGTTTGSNTPLPVSLPAGTDATAVVAGDFHSLALTSAGTVLAWGRNDSGQLGD 124

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD 166
                  T  ++R  +         + V  VAAG  HS+ LT  G V  WG       GD
Sbjct: 125 GTTVSSSTPVVVRLPV--------GVTVTAVAAGFGHSLALTSTGVVLAWGSNSFGQLGD 176

Query: 167 IKQIS----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              +S    V VR+     V  +A G+ H+LAL   GA  AWGNN  GQLG G T   S 
Sbjct: 177 GTTVSSSTPVAVRLPVGVTVTAVAAGSGHSLALTSVGAALAWGNNFSGQLGDGTTVSSST 236

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P+ V+   G T+  +A G  HS ALT  G    WG    G+L  GD    S   P  V+L
Sbjct: 237 PVAVRLPVGTTVTAVAGGSHHSLALTSAGAALAWGGNFSGQL--GDGTTVSSSTPVVVSL 294

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             G  +  ++ G  HSVALT  G   ++G    G+LG G    +  P+ V +
Sbjct: 295 PVGTTVTALAGGDAHSVALTSAGAALAWGSNGDGQLGDGTNADSSVPIAVSL 346



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 154/356 (43%), Gaps = 35/356 (9%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           + +AWG    GQLG G          V         +VVAG  +SLA+            
Sbjct: 58  AFLAWGDNAFGQLGDGTTTGSNTPLPVSLPAGTDATAVVAGDFHSLALTSAGTVLAWGRN 117

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T + + P  V       +   A G  H LA+   G   AWG N +GQ G+ 
Sbjct: 118 DSGQLGDGTTVSSSTPVVVRLPVGVTVTAVAAGFGHSLALTSTGVVLAWGSNSFGQLGD- 176

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDI 167
                  G  +     +  R    + V  VAAG  HS+ LT  G    WG  +    GD 
Sbjct: 177 -------GTTVSSSTPVAVRLPVGVTVTAVAAGSGHSLALTSVGAALAWGNNFSGQLGDG 229

Query: 168 KQIS----VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
             +S    V VR+     V  +A G+ H+LAL   GA  AWG N  GQLG G T   S P
Sbjct: 230 TTVSSSTPVAVRLPVGTTVTAVAGGSHHSLALTSAGAALAWGGNFSGQLGDGTTVSSSTP 289

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V    G T+  +A G  HS ALT  G    WG    G+LG G N  SS  VP  V+L 
Sbjct: 290 VVVSLPVGTTVTALAGGDAHSVALTSAGAALAWGSNGDGQLGDGTNADSS--VPIAVSLP 347

Query: 284 AGEDIVQVSC-GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           AG  I  ++   G H++A+T  G   ++G    G+LG G    +  P+ V  ++PA
Sbjct: 348 AGATITAIAAHDGAHNLAITSTGAALAWGGNGDGQLGDGTNADSSVPIAV--SLPA 401



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 133/328 (40%), Gaps = 41/328 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  +++AWG  + GQLG G         VV+      V +V AG  +SLA+       
Sbjct: 105 LTSAGTVLAWGRNDSGQLGDGTTVSSSTPVVVRLPVGVTVTAVAAGFGHSLALTSTGVVL 164

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T + + P  V       +   A G  H LA+   G A AWG N  G
Sbjct: 165 AWGSNSFGQLGDGTTVSSSTPVAVRLPVGVTVTAVAAGSGHSLALTSVGAALAWGNNFSG 224

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G  +     +  R      V  VA G  HS+ LT  G    WG  +  
Sbjct: 225 QLGD--------GTTVSSSTPVAVRLPVGTTVTAVAGGSHHSLALTSAGAALAWGGNFSG 276

Query: 164 -PGD--------IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
             GD           +S+PV       V  +A G  H++AL   GA  AWG+N  GQLG 
Sbjct: 277 QLGDGTTVSSSTPVVVSLPVG----TTVTALAGGDAHSVALTSAGAALAWGSNGDGQLGD 332

Query: 215 GDTQPRSQPIPVQ-GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
           G     S PI V            A  G H+ A+T  G    WG    G+LG G N  SS
Sbjct: 333 GTNADSSVPIAVSLPAGATITAIAAHDGAHNLAITSTGAALAWGGNGDGQLGDGTNADSS 392

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             VP  V+L AG  I  ++    HS+AL
Sbjct: 393 --VPIAVSLPAGTTITAIAASVEHSLAL 418



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +PV +        +  G FH+LAL   G + AWG N+ GQLG G T   S P+ V+   G
Sbjct: 82  LPVSLPAGTDATAVVAGDFHSLALTSAGTVLAWGRNDSGQLGDGTTVSSSTPVVVRLPVG 141

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +T+  +AAG  HS ALT  G V  WG    G+LG G    SS   P  V L  G  +  V
Sbjct: 142 VTVTAVAAGFGHSLALTSTGVVLAWGSNSFGQLGDGTTVSSST--PVAVRLPVGVTVTAV 199

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + G  HS+ALT  G   ++G    G+LG G  V++  P+ V + +     A         
Sbjct: 200 AAGSGHSLALTSVGAALAWGNNFSGQLGDGTTVSSSTPVAVRLPVGTTVTA--------- 250

Query: 352 AKLVACGGRHTLAIVE 367
              VA G  H+LA+  
Sbjct: 251 ---VAGGSHHSLALTS 263



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           A  AWG+N +GQLG G T   + P+PV   +G     + AG +HS ALT  G V  WGR 
Sbjct: 58  AFLAWGDNAFGQLGDGTTTGSNTPLPVSLPAGTDATAVVAGDFHSLALTSAGTVLAWGRN 117

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           + G+LG G    SS   P  V L  G  +  V+ G  HS+ALT  G + ++G    G+LG
Sbjct: 118 DSGQLGDGTTVSSST--PVVVRLPVGVTVTAVAAGFGHSLALTSTGVVLAWGSNSFGQLG 175

Query: 320 YGRKVTTGQPMEV--PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G  V++  P+ V  P+ +                  VA G  H+LA+  
Sbjct: 176 DGTTVSSSTPVAVRLPVGV--------------TVTAVAAGSGHSLALTS 211


>gi|332233500|ref|XP_003265940.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Nomascus leucogenys]
          Length = 1024

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSVDQGAEHMLILSSDGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  +++  ++CGG+HS  LT+DG +F+FG G 
Sbjct: 214 SWGKNEFGQLGLGHTE--SKDYPSLIEALDNQEVEFLACGGSHSALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V          G+ V +      +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLVA------ELVGNRVTQ------IACGRWHTLAYV 311



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 41/287 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGAEHMLILSSDGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE+GQLG G T+ +  P  ++ L   
Sbjct: 185 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEALDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 244 EVEFLACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGNRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           CG  H++A   D G +FSFG G  G+LG G   T  Q + +P+ + +
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGG--TRDQLIPLPVKVSS 346



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 48/333 (14%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVNA-----LSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK    +  S  +      L   KI+Q   G +H LA+   G
Sbjct: 98  KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKIIQITCGDYHSLALSKGG 157

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 158 ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 203

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           + L+  G++++WG+        G  +    P  ++ L  ++V+ +A G  H+  L +DG 
Sbjct: 204 MALSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEALDNQEVEFLACGGSHSALLTQDGL 263

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
           L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+ A   D G+V+ +G G
Sbjct: 264 LFTFGAGKHGQLGHNSTQNELRPCLVAELVGNRVTQIACGRWHTLAYVSDLGKVFSFGSG 323

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           + G+LG G      +++P  V + + E++       TH    T +  +     G+   L 
Sbjct: 324 KDGQLGNGGT--RDQLIPLPVKVSSSEELKL----ETH----TSEKELIMIAGGNQSILL 373

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
           + +K  +   + +   IP      +G  RRWIA
Sbjct: 374 WIKKENSY--VNLKRTIPT---LNEGTVRRWIA 401



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 36/219 (16%)

Query: 35  LEPYKVRSVVAGSRNSLAICDDG-----------------KTKTENIPSQVNALSNTKIV 77
           L+  K+  +  G  +SLA+   G                 K  +   P  V  L+   + 
Sbjct: 135 LQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLA 194

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIV 136
           Q + G  H +A+   G  Y+WG NE+GQ G    E KD    I   D            V
Sbjct: 195 QISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEALD---------NQEV 245

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVKLIAVGA 189
             +A GG+HS +LT++G ++T+G     G +   S      P  V  L   +V  IA G 
Sbjct: 246 EFLACGGSHSALLTQDGLLFTFGAG-KHGQLGHNSTQNELRPCLVAELVGNRVTQIACGR 304

Query: 190 FHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +H LA   D G ++++G+ + GQLG G T+ +  P+PV+
Sbjct: 305 WHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLIPLPVK 343



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E +++  +++AL+  +V  +  G  +S  +  DG   
Sbjct: 206 LSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEALDNQEVEFLACGGSHSALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELVGNRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329


>gi|74140640|dbj|BAB27358.3| unnamed protein product [Mus musculus]
          Length = 576

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 123/247 (49%), Gaps = 36/247 (14%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS-VPVRVQGLEQVKLIAV--G 188
           V  V+ G  HSV +  +G V+ WG         G+ K+IS +P +++ L  +K+I V  G
Sbjct: 3   VDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCG 62

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTA 246
            +H+LAL EDG +++WG N  GQLG G    RSQ IP  V+ L G+ L  +AAGG HS A
Sbjct: 63  HYHSLALSEDGHVFSWGRNSEGQLGLGKNS-RSQAIPQKVKSLEGIPLAQVAAGGTHSFA 121

Query: 247 LTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           L+  G  +GWG    G+L   G+  K     P  +  L    ++ +SCG  H+  LT +G
Sbjct: 122 LSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEG 181

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG------DGVDRRWIAKLVACGG 359
            +F+FG    G+L                  P+PR+        +G+  R     + C  
Sbjct: 182 QVFTFGGNSSGQLQ-----------------PSPRSGQRGPQLIEGIGGR--VSQIECAS 222

Query: 360 RHTLAIV 366
            HT+A V
Sbjct: 223 YHTIAYV 229



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAA 239
            V L++ G  H++A+   G ++AWG    GQLG G+ +  S  P  ++ L+G+ ++ ++ 
Sbjct: 2   HVDLVSCGKEHSVAVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSC 61

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G +HS AL++DG V+ WGR   G+LG G N + S+ +PQKV  L G  + QV+ GGTHS 
Sbjct: 62  GHYHSLALSEDGHVFSWGRNSEGQLGLGKNSR-SQAIPQKVKSLEGIPLAQVAAGGTHSF 120

Query: 300 ALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           AL+  G  F +G    G+L   G KV   + +  P +I A +N             ++CG
Sbjct: 121 ALSLTGTSFGWGSNRSGQLALSGNKVK--EQIYKPHSIGALKNLS--------VIYISCG 170

Query: 359 GRHTLAIVE 367
             HT  + E
Sbjct: 171 YEHTAVLTE 179



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 129/301 (42%), Gaps = 66/301 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWG+G +GQLGIG  +E  +                                   +P+
Sbjct: 22  VFAWGAGSEGQLGIGEFKEISF-----------------------------------MPT 46

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++ AL+  KI+Q + G +H LA+ + G  ++WG N  GQ G              R   I
Sbjct: 47  KIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKN---------SRSQAI 97

Query: 127 PQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGD--IKQISVPVRVQ 177
           PQ+      + + QVAAGGTHS  L+  G  + W     GQ    G+   +QI  P  + 
Sbjct: 98  PQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIG 157

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L+ + +I +  G  H   L E+G ++ +G N  GQL       +  P  ++G+ G  + 
Sbjct: 158 ALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQLQPSPRSGQRGPQLIEGIGG-RVS 216

Query: 236 DIAAGGWHSTA-LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK----VNLLAGEDIVQ 290
            I    +H+ A +   G+V   GRG         ++ + +  P +      LLA ED+V 
Sbjct: 217 QIECASYHTIAYVYTTGQVVSLGRGPS-----HTSNPTHQEAPAENSDITCLLAAEDLVD 271

Query: 291 V 291
           +
Sbjct: 272 I 272


>gi|384947464|gb|AFI37337.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
          Length = 1023

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 25/234 (10%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNL 193
           +  V  G  H ++L+ +G  + +   +    ++  S+      L++ K+I +  G +H+L
Sbjct: 99  IHSVDQGADHMLILSSDGKPFEYD--YSMKHLRSESI------LQEKKIIQITCGDYHSL 150

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           AL + G L+AWG N +GQLG G T P +  P  V+ L+G+ L  I+AG  HS AL+  G 
Sbjct: 151 ALSKGGELFAWGQNLHGQLGVGRTFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGN 210

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG+ E G+LG G  +  SK  P  +  L  + +  ++CGG+HS  LT+DG +F+FG 
Sbjct: 211 IYSWGKNEFGQLGLGHTE--SKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFGA 268

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           G HG+LG+       +P  V          G+ V +      +ACG  HTLA V
Sbjct: 269 GKHGQLGHNSTQNELRPCLVA------ELVGNRVTQ------IACGRWHTLAYV 310



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 40/284 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ + +               D + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGADHMLILSSDGKPFEY---------------DYSMKHLRSES 132

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 133 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRTFPSTTTPQI---- 183

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE+GQLG G T+ +  P  ++ L   
Sbjct: 184 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQ 242

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 243 KVEFLACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGNRVTQIA 300

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           CG  H++A   D G +FSFG G  G+LG G  +    P+ V ++
Sbjct: 301 CGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQLIPLPVKVS 344



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 45/312 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 158 LFAWGQNLHGQLGVGRTFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 217

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS + AL N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 218 EFGQLGLGHTESKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFGAGKHGQLGHN 277

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 278 STQNE------LRPCLVAELVGNR--VTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGN 329

Query: 164 PGDIKQ-ISVPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G + Q I +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 330 GGTLDQLIPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 384

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P   +G     + D+    WHST   +  E++       G   F    ++++M+P 
Sbjct: 385 -RTIPTLNEGTVKRWIADVETKRWHSTK-REIQEIFSSPACLTG--SFLRKRRTTEMMPV 440

Query: 279 KVNLLAGEDIVQ 290
            ++L    DI +
Sbjct: 441 YLDLNKARDIFK 452



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E ++   +++AL+  KV  +  G  +S  +  DG   
Sbjct: 205 LSMSGNIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLF 264

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 265 TFGAGKHGQLGHNSTQNELRPCLVAELVGNRVTQIACGRWHTLAYVSDFGKVFSFGSGKD 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|330837350|ref|YP_004411991.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
 gi|329749253|gb|AEC02609.1| Listeria/Bacterioides repeat-containing protein [Sphaerochaeta
           coccoides DSM 17374]
          Length = 847

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 150/299 (50%), Gaps = 28/299 (9%)

Query: 45  AGSRNSLAICDDGKTKTENIPSQVNALSN-----TKIVQAAIGGWHCLAVDDQGRAYAWG 99
           A  RN+     D    +  IP QV   ++     T +V  + G  H + +   G  +A G
Sbjct: 564 ATGRNNYGQLGDATRISRYIPVQVKVSTSLTDFMTDVVAVSTGERHTMILKKDGTLWATG 623

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            NE+GQ G++      T          P R    L V  V+AG TH+++L ++G +W  G
Sbjct: 624 DNEFGQVGDKTMTTKTT----------PVRMG--LDVAAVSAGATHTMILKKDGTLWATG 671

Query: 160 QPWP--PGDIKQIS--VPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           + +    GD  +    +PV V  +   V  ++ GA H + L++DG LWA G+N YGQLG 
Sbjct: 672 RNYSGQLGDDTRTDRRMPVLVMSIGSDVAAVSAGATHTMILKKDGTLWATGDNSYGQLGI 731

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSS 273
           G+ + ++ P+ V       +  ++AG  H+  L  DG ++  G  E+G+LG GD+  ++ 
Sbjct: 732 GNNEDKNTPVKVM----TDVKAVSAGVSHTMILKKDGTLWATGNNEYGQLGLGDSGSRTH 787

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +  P++V  + G D+ +VS G   ++ L +DG +++ GR   G+ G G       P+++
Sbjct: 788 RCTPKQVTSM-GSDVAEVSAGAELTMILKKDGTLWATGRNRFGQRGDGDTSEKTTPVQI 845



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 139/278 (50%), Gaps = 36/278 (12%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP-- 132
           KI   + G  H + +   G  +A G N YGQ G               D  +P R  P  
Sbjct: 494 KIKAVSAGKSHTMILKMDGTLWATGDNYYGQLG---------------DKTMPTRTTPVR 538

Query: 133 -KLIVRQVAAGGTHSVVLTREGHVWTWGQP--WPPGDIKQIS--VPVRVQ-------GLE 180
             L V  V+AG +H+++L + G +W  G+      GD  +IS  +PV+V+        + 
Sbjct: 539 VSLDVAAVSAGESHTMILKKNGTLWATGRNNYGQLGDATRISRYIPVQVKVSTSLTDFMT 598

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
            V  ++ G  H + L++DG LWA G+NE+GQ+G      ++ P+ +    GL +  ++AG
Sbjct: 599 DVVAVSTGERHTMILKKDGTLWATGDNEFGQVGDKTMTTKTTPVRM----GLDVAAVSAG 654

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H+  L  DG ++  GR   G+LG  D+ ++ + +P  V +  G D+  VS G TH++ 
Sbjct: 655 ATHTMILKKDGTLWATGRNYSGQLG--DDTRTDRRMPVLV-MSIGSDVAAVSAGATHTMI 711

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           L +DG +++ G   +G+LG G       P++V  ++ A
Sbjct: 712 LKKDGTLWATGDNSYGQLGIGNNEDKNTPVKVMTDVKA 749



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           L ++K ++ G  H + L+ DG LWA G+N YGQLG      R+ P+ V     L +  ++
Sbjct: 492 LVKIKAVSAGKSHTMILKMDGTLWATGDNYYGQLGDKTMPTRTTPVRVS----LDVAAVS 547

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG-----EDIVQVSC 293
           AG  H+  L  +G ++  GR  +G+L  GD  + S+ +P +V +         D+V VS 
Sbjct: 548 AGESHTMILKKNGTLWATGRNNYGQL--GDATRISRYIPVQVKVSTSLTDFMTDVVAVST 605

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           G  H++ L +DG +++ G  + G++G     T   P+ + +++ A
Sbjct: 606 GERHTMILKKDGTLWATGDNEFGQVGDKTMTTKTTPVRMGLDVAA 650


>gi|387541824|gb|AFJ71539.1| E3 ISG15--protein ligase HERC5 [Macaca mulatta]
          Length = 1023

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 25/234 (10%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNL 193
           +  V  G  H ++L+ +G  + +   +    ++  S+      L++ K+I +  G +H+L
Sbjct: 99  IHSVDQGADHMLILSSDGKPFEYD--YSMKHLRSESI------LQEKKIIQITCGDYHSL 150

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           AL + G L+AWG N +GQLG G T P +  P  V+ L+G+ L  I+AG  HS AL+  G 
Sbjct: 151 ALSKGGELFAWGQNLHGQLGVGRTFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGN 210

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           +Y WG+ E G+LG G  +  SK  P  +  L  + +  ++CGG+HS  LT+DG +F+FG 
Sbjct: 211 IYSWGKNEFGQLGLGHTE--SKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFGA 268

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           G HG+LG+       +P  V          G+ V +      +ACG  HTLA V
Sbjct: 269 GKHGQLGHNSTQNELRPCLVA------ELVGNRVTQ------IACGRWHTLAYV 310



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 40/284 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ + +               D + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGADHMLILSSDGKPFEY---------------DYSMKHLRSES 132

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 133 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRTFPSTTTPQI---- 183

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE+GQLG G T+ +  P  ++ L   
Sbjct: 184 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQ 242

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 243 KVEFLACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGNRVTQIA 300

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           CG  H++A   D G +FSFG G  G+LG G  +    P+ V ++
Sbjct: 301 CGRWHTLAYVSDFGKVFSFGSGKDGQLGNGGTLDQLIPLPVKVS 344



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E ++   +++AL+  KV  +  G  +S  +  DG   
Sbjct: 205 LSMSGNIYSWGKNEFGQLGLGHTESKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLF 264

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 265 TFGAGKHGQLGHNSTQNELRPCLVAELVGNRVTQIACGRWHTLAYVSDFGKVFSFGSGKD 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 129/312 (41%), Gaps = 45/312 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 158 LFAWGQNLHGQLGVGRTFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 217

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS + AL N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 218 EFGQLGLGHTESKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFGAGKHGQLGHN 277

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 278 STQNE------LRPCLVAELVGNR--VTQIACGRWHTLAYVSDFGKVFSFGSGKDGQLGN 329

Query: 164 PGDIKQ-ISVPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G + Q I +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 330 GGTLDQLIPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 384

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P   +G     + D+    WHST   +  E++       G   F    ++++M+P 
Sbjct: 385 -RTIPTLNEGTVKRWIADVETKRWHSTK-REIQEIFSSPACLTG--SFLRKRRTTEMMPV 440

Query: 279 KVNLLAGEDIVQ 290
            ++L    +I +
Sbjct: 441 YLDLNKARNIFK 452


>gi|359726911|ref|ZP_09265607.1| RCC1 domain-containing protein [Leptospira weilii str. 2006001855]
          Length = 506

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 150/349 (42%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 193 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRT--AGNRQP---------- 230

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  + +   V  A G  H L +   G   A+G N  GQ G      +     +
Sbjct: 231 ----PTLVPGIDDA--VMGAYGFNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSM 284

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 285 NPVAVVGLRD-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANTAQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT-GDTQPRSQPIPVQGLS 230
            PV+V+GL ++K IA G  H LAL  DG +++WG N  GQLG  G+  P   PIP Q L+
Sbjct: 339 TPVKVEGLPEIKQIANGRDHILALASDGRIYSWGLNASGQLGIGGNGSPNPTPIPTQVLN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            L    + AGG  S ++   GEV GWG  G    L  G+ +      P K  ++  +D++
Sbjct: 399 ILNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTQKVYEPNKA-VVGIDDVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+  L  +G I+ +G    G LG    +   G P  V I +P
Sbjct: 458 HFGCGATHNFVLLGNGEIYGWGWNFKGSLGRQDLQANWGAPNPVSITLP 506



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 39/289 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+   + GG H   + + G  Y  G N +GQ G      D+       D+++
Sbjct: 122 EVNFYFGTKL---SAGGAHSGFLKN-GEVYTTGRNNFGQLGTGNSTGDE-----NNDVIV 172

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                    +  +     +S+ + + G V+TWG               P  P        
Sbjct: 173 KLNSIRN--ISSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQP 230

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-----QPIPVQ 227
           P  V G++   + A G  H L L+ DG + A+G N  GQLG G     +      P+ V 
Sbjct: 231 PTLVPGIDDAVMGAYGFNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSFSMNPVAVV 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAG 285
           GL    ++ + AG  HS ALT++GEVY WGR ++G LG G      +++  P KV  L  
Sbjct: 291 GLR--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANTAQSTPVKVEGLP- 347

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +I Q++ G  H +AL  DG I+S+G    G+LG G     G P   PI
Sbjct: 348 -EIKQIANGRDHILALASDGRIYSWGLNASGQLGIGGN---GSPNPTPI 392



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 43/272 (15%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
           R  + D  I Q+        +++AGG HS  L + G V+T G+     +  Q+       
Sbjct: 110 RFKKPDGTILQKEVNFYFGTKLSAGGAHSGFL-KNGEVYTTGR----NNFGQLGTGNSTG 164

Query: 171 ----SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP----- 219
                V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P     
Sbjct: 165 DENNDVIVKLNSIRNISSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRT 224

Query: 220 ---RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSS 273
              R  P  V G+    +   A G  H+  L  DG +  +G+   G+LG G ND    S 
Sbjct: 225 AGNRQPPTLVPGIDDAVMG--AYGFNHALILKSDGTIVAFGQNNVGQLGNGANDLNADSF 282

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            M P  V ++   D++QV  G  HS ALT +G ++ +GR  +G LG GR          P
Sbjct: 283 SMNP--VAVVGLRDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANTAQSTP 340

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           + +       +G+      K +A G  H LA+
Sbjct: 341 VKV-------EGLPE---IKQIANGRDHILAL 362


>gi|156396924|ref|XP_001637642.1| predicted protein [Nematostella vectensis]
 gi|156224756|gb|EDO45579.1| predicted protein [Nematostella vectensis]
          Length = 1152

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 139/285 (48%), Gaps = 26/285 (9%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G+ Y+WG  +YG+ G    +     +++   +     C        +AAG  
Sbjct: 461 HTLALTLDGKVYSWGDGDYGKLGHGNSQTQKIPKLVEGALGNKVVCC-------IAAGYR 513

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG- 199
           HS  +T +G ++TWG+        GD    +VPV+V+ +  V  +A G+ H + + +DG 
Sbjct: 514 HSAAVTEDGELYTWGEGDYGRLGHGDNNSRNVPVQVKDVANVGQVACGSAHTVCVSQDGQ 573

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            +W++G+ + G+LG  DT    +P  ++ L G+ +  +  G   S ALT  G+VY WG G
Sbjct: 574 TVWSFGSGDNGKLGHSDTNRVYKPKVIEALQGMVIRKVCCGSQCSLALTSTGQVYVWGCG 633

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
               LG G  D +S   P+ +  L    +V +S G +H VALT+D +++++G    G+ G
Sbjct: 634 P--SLGTGSVDATSA-TPKLLLALQSHSVVDISVGDSHCVALTQDNNVYAWGNNSMGQCG 690

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            G   T       PI  P      DGV        ++ G  HT+A
Sbjct: 691 QGHCTT-------PITKPKKVLGLDGV----AVHQISAGTSHTVA 724



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 37/280 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG G+ G+LG GN++ ++   +V+ AL    V  + AG R+S A+ +DG+  T    
Sbjct: 471 VYSWGDGDYGKLGHGNSQTQKIPKLVEGALGNKVVCCIAAGYRHSAAVTEDGELYTWGEG 530

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEYGQCGE 108
                        N+P QV  ++N  + Q A G  H + V   G+  +++G  + G+ G 
Sbjct: 531 DYGRLGHGDNNSRNVPVQVKDVAN--VGQVACGSAHTVCVSQDGQTVWSFGSGDNGKLGH 588

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGD 166
                 DT R+ +  ++        +++R+V  G   S+ LT  G V+ WG       G 
Sbjct: 589 S-----DTNRVYKPKVI---EALQGMVIRKVCCGSQCSLALTSTGQVYVWGCGPSLGTGS 640

Query: 167 IKQIS-VPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQ 222
           +   S  P  +  L+   V  I+VG  H +AL +D  ++AWGNN  GQ G G  T P ++
Sbjct: 641 VDATSATPKLLLALQSHSVVDISVGDSHCVALTQDNNVYAWGNNSMGQCGQGHCTTPITK 700

Query: 223 PIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGRG 259
           P  V GL G+ +  I+AG  H+   TAL  D +V  W R 
Sbjct: 701 PKKVLGLDGVAVHQISAGTSHTVAWTALPMDRQVVSWYRA 740



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 19/258 (7%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P    +  + + ++A  G +    +   G  +A G   YG+ G      D T +   + 
Sbjct: 387 VPKLATSFGSAQQIEA--GQYCTFVIFPDGFVHACGKGSYGRLG----LGDSTNQTQLKR 440

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           +     C     V        H++ LT +G V++WG         G+ +   +P  V+G 
Sbjct: 441 LNFDNECL-VKSVSSSKGSDGHTLALTLDGKVYSWGDGDYGKLGHGNSQTQKIPKLVEGA 499

Query: 180 ---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
              + V  IA G  H+ A+ EDG L+ WG  +YG+LG GD   R+ P+ V+ ++ +    
Sbjct: 500 LGNKVVCCIAAGYRHSAAVTEDGELYTWGEGDYGRLGHGDNNSRNVPVQVKDVANVG--Q 557

Query: 237 IAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           +A G  H+  ++ DG+ V+ +G G++G+LG  D ++  K  P+ +  L G  I +V CG 
Sbjct: 558 VACGSAHTVCVSQDGQTVWSFGSGDNGKLGHSDTNRVYK--PKVIEALQGMVIRKVCCGS 615

Query: 296 THSVALTRDGHIFSFGRG 313
             S+ALT  G ++ +G G
Sbjct: 616 QCSLALTSTGQVYVWGCG 633



 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 57  GKTKTENIPSQVN-ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G ++T+ IP  V  AL N  +   A G  H  AV + G  Y WG  +YG+ G      D+
Sbjct: 485 GNSQTQKIPKLVEGALGNKVVCCIAAGYRHSAAVTEDGELYTWGEGDYGRLGH----GDN 540

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ----PWPPGDIKQI 170
             R       +P +      V QVA G  H+V ++++G  VW++G          D  ++
Sbjct: 541 NSR------NVPVQVKDVANVGQVACGSAHTVCVSQDGQTVWSFGSGDNGKLGHSDTNRV 594

Query: 171 SVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQ 227
             P  ++ L+   ++ +  G+  +LAL   G ++ WG      LGTG     S  P  + 
Sbjct: 595 YKPKVIEALQGMVIRKVCCGSQCSLALTSTGQVYVWGCGP--SLGTGSVDATSATPKLLL 652

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L   ++VDI+ G  H  ALT D  VY WG    G+ G G +  +    P+KV  L G  
Sbjct: 653 ALQSHSVVDISVGDSHCVALTQDNNVYAWGNNSMGQCGQG-HCTTPITKPKKVLGLDGVA 711

Query: 288 IVQVSCGGTHSVALT 302
           + Q+S G +H+VA T
Sbjct: 712 VHQISAGTSHTVAWT 726



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
           +FH  +   +  ++ WG+N   QL  G        +P    S  +   I AG + +  + 
Sbjct: 354 SFHGNSFASNEEVYVWGSNSSHQLAEGSMD--KILVPKLATSFGSAQQIEAGQYCTFVIF 411

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL---LAGEDIVQVSCGGTHSVALTRDG 305
            DG V+  G+G +GRLG GD+   +++  +++N       + +        H++ALT DG
Sbjct: 412 PDGFVHACGKGSYGRLGLGDSTNQTQL--KRLNFDNECLVKSVSSSKGSDGHTLALTLDG 469

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++S+G GD+G+LG+G   T   P  V           +G     +   +A G RH+ A+
Sbjct: 470 KVYSWGDGDYGKLGHGNSQTQKIPKLV-----------EGALGNKVVCCIAAGYRHSAAV 518

Query: 366 VE 367
            E
Sbjct: 519 TE 520



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 30/164 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ ++GSG++G+LG  +        V++AL+   +R V  GS+ SLA+   G+       
Sbjct: 574 TVWSFGSGDNGKLGHSDTNRVYKPKVIEALQGMVIRKVCCGSQCSLALTSTGQVYVWGCG 633

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-- 108
                     T   P  + AL +  +V  ++G  HC+A+      YAWG N  GQCG+  
Sbjct: 634 PSLGTGSVDATSATPKLLLALQSHSVVDISVGDSHCVALTQDNNVYAWGNNSMGQCGQGH 693

Query: 109 --EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
              P  K    ++L  D V          V Q++AG +H+V  T
Sbjct: 694 CTTPITKPK--KVLGLDGV---------AVHQISAGTSHTVAWT 726


>gi|408500684|ref|YP_006864603.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465508|gb|AFU71037.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1173

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 167/361 (46%), Gaps = 62/361 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ +WG+  DG+LG      RE V       P                      +
Sbjct: 233 IGSDGNLYSWGNNADGELG------RETVSTTPKDNP----------------------Q 264

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +N P  V   +     QA  G WH LA+   G  Y+WG N+YG+ G       DTG  +
Sbjct: 265 IDNQPKLVTPPAGVHFTQACAGKWHSLALGSDGNLYSWGENKYGELGR------DTGSAI 318

Query: 121 RRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREGHVWTWGQ-------------PWPPG 165
             D+   +   PK I +  Q++AG  +S+ L  +G +++WG              P+   
Sbjct: 319 -YDVKPGKVNLPKGITKITQISAGTFYSMALDSDGDLYSWGDNTYDELGRYAGGYPFRDR 377

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ--- 222
             +++++P    G+++   I  G + +LA   DG+L++WG NEYGQLG  +T P  Q   
Sbjct: 378 SPRKMTMPA---GVKKFTWIKAGEWTSLATSSDGSLYSWGWNEYGQLGR-NTAPARQDRT 433

Query: 223 PIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           P  V   +G+T    ++A   HS AL  DG +Y WG  +  +LG         + P KV 
Sbjct: 434 PRKVTMPAGVTKFTKVSAEHRHSLALGSDGNLYSWGLNDCKQLGRDTGSAKYDVKPGKVP 493

Query: 282 LLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             AG     +VS G +HS+A+  DG+++S+G+  +G LG   + T+G+    P  +  P 
Sbjct: 494 TPAGVAQFTEVSAGYSHSLAIGSDGNLYSWGQNKYGELG---RPTSGKYDSSPGMVAFPE 550

Query: 341 N 341
           +
Sbjct: 551 D 551



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 152/327 (46%), Gaps = 41/327 (12%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE---PERKDDTGR 118
           +  PS VN  +     Q + G  H LA+   G  Y+WG N  G+ G E      KD+   
Sbjct: 206 KRTPSLVNPPTGVHFTQVSTGYTHFLAIGSDGNLYSWGNNADGELGRETVSTTPKDNPQI 265

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----------WPPGDIK 168
             +  +V P      +   Q  AG  HS+ L  +G++++WG+               D+K
Sbjct: 266 DNQPKLVTPPAG---VHFTQACAGKWHSLALGSDGNLYSWGENKYGELGRDTGSAIYDVK 322

Query: 169 --QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG-------TGDTQP 219
             ++++P   +G+ ++  I+ G F+++AL  DG L++WG+N Y +LG         D  P
Sbjct: 323 PGKVNLP---KGITKITQISAGTFYSMALDSDGDLYSWGDNTYDELGRYAGGYPFRDRSP 379

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R   +P  G+   T   I AG W S A + DG +Y WG  E+G+LG           P+K
Sbjct: 380 RKMTMPA-GVKKFTW--IKAGEWTSLATSSDGSLYSWGWNEYGQLGRNTAPARQDRTPRK 436

Query: 280 VNLLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           V + AG     +VS    HS+AL  DG+++S+G  D  +L  GR   + +    P  +P 
Sbjct: 437 VTMPAGVTKFTKVSAEHRHSLALGSDGNLYSWGLNDCKQL--GRDTGSAKYDVKPGKVPT 494

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P       +       V+ G  H+LAI
Sbjct: 495 PAGVAQFTE-------VSAGYSHSLAI 514



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 151/343 (44%), Gaps = 47/343 (13%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--SVVAGSRNSLAICDDG------ 57
            S+  WG    GQLG  +  ++      KA  P  V    V AG   S+A+  DG      
Sbjct: 728  SLYTWGDNSHGQLGR-DTADKPDSHPSKAEAPAGVTFVHVSAGYGFSVALASDGSLYSWG 786

Query: 58   --------KTKTENIPS----QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                    +T T N P+    +V A +    VQA+ GG H +A+   G  Y WG N  GQ
Sbjct: 787  DNSRGQLGRTVTSNNPANRPHKVEAPAGITFVQASAGGSHVVALSSDGNIYTWGDNSAGQ 846

Query: 106  CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
             G      +   +  + D          +    V+AG  H+V +  +G V+TWG     G
Sbjct: 847  LGRTVTSNNPADKPGKAD------TPADVTFTSVSAGQGHTVAVDTQGDVYTWGDN-THG 899

Query: 166  DI--KQISVPVRVQGLEQVKL------IAVGAFHNLALQEDGALWAWGNNEYGQLG-TGD 216
            ++     S P    G             + G  H++A+ +DG+++ WG+   G+LG   +
Sbjct: 900  ELGRSTTSTPADKPGKADTPAGITFTQASAGESHSVAVSDDGSIYTWGDTANGRLGRDTN 959

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
              P  +P      +G+T    +AGG HS AL  DG +Y WG          D+ K+S   
Sbjct: 960  ITPADKPGKADTPAGVTFTQASAGGKHSIALGSDGSLYTWG----------DSGKTSAGR 1009

Query: 277  PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            P KV+  AG    Q S G ++ +AL  DG+++S+G    G+LG
Sbjct: 1010 PNKVDTPAGITFTQASAGASYCLALGSDGNLYSWGDNAKGQLG 1052



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 30/292 (10%)

Query: 56   DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
            D   K ++ PS+  A +    V  + G    +A+   G  Y+WG N  GQ G      + 
Sbjct: 743  DTADKPDSHPSKAEAPAGVTFVHVSAGYGFSVALASDGSLYSWGDNSRGQLGRTVTSNNP 802

Query: 116  TGRILRRDIVIPQRC-APK-LIVRQVAAGGTHSVVLTREGHVWTWGQPW----------- 162
              R        P +  AP  +   Q +AGG+H V L+ +G+++TWG              
Sbjct: 803  ANR--------PHKVEAPAGITFVQASAGGSHVVALSSDGNIYTWGDNSAGQLGRTVTSN 854

Query: 163  -PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PR 220
             P     +   P  V        ++ G  H +A+   G ++ WG+N +G+LG   T  P 
Sbjct: 855  NPADKPGKADTPADVT----FTSVSAGQGHTVAVDTQGDVYTWGDNTHGELGRSTTSTPA 910

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             +P      +G+T    +AG  HS A++DDG +Y WG   +GRLG  D + +    P K 
Sbjct: 911  DKPGKADTPAGITFTQASAGESHSVAVSDDGSIYTWGDTANGRLGR-DTNITPADKPGKA 969

Query: 281  NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  AG    Q S GG HS+AL  DG ++++  GD G+   GR      P  +
Sbjct: 970  DTPAGVTFTQASAGGKHSIALGSDGSLYTW--GDSGKTSAGRPNKVDTPAGI 1019



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 35/304 (11%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-APK 133
           +I QA  G  H  AV   G  Y WG N +GQ G +   K D+          P +  AP 
Sbjct: 709 RISQADGGDLHSAAVGSDGSLYTWGDNSHGQLGRDTADKPDSH---------PSKAEAPA 759

Query: 134 -LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-------PVRVQGLEQVKLI 185
            +    V+AG   SV L  +G +++WG     G + +          P +V+    +  +
Sbjct: 760 GVTFVHVSAGYGFSVALASDGSLYSWGDN-SRGQLGRTVTSNNPANRPHKVEAPAGITFV 818

Query: 186 --AVGAFHNLALQEDGALWAWGNNEYGQLGTGDT--QPRSQPIPVQGLSGLTLVDIAAGG 241
             + G  H +AL  DG ++ WG+N  GQLG   T   P  +P      + +T   ++AG 
Sbjct: 819 QASAGGSHVVALSSDGNIYTWGDNSAGQLGRTVTSNNPADKPGKADTPADVTFTSVSAGQ 878

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            H+ A+   G+VY WG   HG LG       +   P K +  AG    Q S G +HSVA+
Sbjct: 879 GHTVAVDTQGDVYTWGDNTHGELGRSTTSTPADK-PGKADTPAGITFTQASAGESHSVAV 937

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           + DG I+++G   +GRLG    +T       P + P   +   GV         + GG+H
Sbjct: 938 SDDGSIYTWGDTANGRLGRDTNIT-------PADKPGKADTPAGV----TFTQASAGGKH 986

Query: 362 TLAI 365
           ++A+
Sbjct: 987 SIAL 990



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 149/333 (44%), Gaps = 54/333 (16%)

Query: 59  TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
           T+    P     +  + IV A   G   +A D  G  Y WG N Y     E E++     
Sbjct: 155 TRITLTPPTTPDIRFSHIVPAKEEGSQAIASD--GNLYRWGDNNYKLGTPEDEKR----- 207

Query: 119 ILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRV 176
                   P    P   V   QV+ G TH + +  +G++++WG     G++ + +V    
Sbjct: 208 -------TPSLVNPPTGVHFTQVSTGYTHFLAIGSDGNLYSWGNN-ADGELGRETVSTTP 259

Query: 177 QGLEQV----KLIA-----------VGAFHNLALQEDGALWAWGNNEYGQLG--TGDTQP 219
           +   Q+    KL+             G +H+LAL  DG L++WG N+YG+LG  TG    
Sbjct: 260 KDNPQIDNQPKLVTPPAGVHFTQACAGKWHSLALGSDGNLYSWGENKYGELGRDTGSAIY 319

Query: 220 RSQPIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRL-----GFGDNDKSS 273
             +P  V    G+T +  I+AG ++S AL  DG++Y WG   +  L     G+   D+S 
Sbjct: 320 DVKPGKVNLPKGITKITQISAGTFYSMALDSDGDLYSWGDNTYDELGRYAGGYPFRDRS- 378

Query: 274 KMVPQKVNLLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              P+K+ + AG +    +  G   S+A + DG ++S+G  ++G+L  GR     +    
Sbjct: 379 ---PRKMTMPAGVKKFTWIKAGEWTSLATSSDGSLYSWGWNEYGQL--GRNTAPARQDRT 433

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P  +  P     GV +      V+   RH+LA+
Sbjct: 434 PRKVTMPA----GVTK---FTKVSAEHRHSLAL 459



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 126/311 (40%), Gaps = 47/311 (15%)

Query: 1    MASTTSIIAWGSGEDGQLG--IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG- 57
            +AS  S+ +WG    GQLG  + +N        V+A          AG  + +A+  DG 
Sbjct: 776  LASDGSLYSWGDNSRGQLGRTVTSNNPANRPHKVEAPAGITFVQASAGGSHVVALSSDGN 835

Query: 58   -------------KTKTENIPS----QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                         +T T N P+    + +  ++      + G  H +AVD QG  Y WG 
Sbjct: 836  IYTWGDNSAGQLGRTVTSNNPADKPGKADTPADVTFTSVSAGQGHTVAVDTQGDVYTWGD 895

Query: 101  NEYGQCGEEPERK--DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
            N +G+ G        D  G+               +   Q +AG +HSV ++ +G ++TW
Sbjct: 896  NTHGELGRSTTSTPADKPGKA---------DTPAGITFTQASAGESHSVAVSDDGSIYTW 946

Query: 159  GQPWP-----PGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQ 211
            G           +I     P +      V     + G  H++AL  DG+L+ WG++  G+
Sbjct: 947  GDTANGRLGRDTNITPADKPGKADTPAGVTFTQASAGGKHSIALGSDGSLYTWGDS--GK 1004

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
               G      +P  V   +G+T    +AG  +  AL  DG +Y WG    G+LG    D 
Sbjct: 1005 TSAG------RPNKVDTPAGITFTQASAGASYCLALGSDGNLYSWGDNAKGQLGRDTGDT 1058

Query: 272  SSKMVPQKVNL 282
             S   P K N 
Sbjct: 1059 WS-ASPAKDNF 1068



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+ +     G  HS A+  DG +Y WG   HG+LG    DK     P K    AG   V 
Sbjct: 707 GIRISQADGGDLHSAAVGSDGSLYTWGDNSHGQLGRDTADKPDSH-PSKAEAPAGVTFVH 765

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           VS G   SVAL  DG ++S+G    G+L  GR VT+  P   P  + AP
Sbjct: 766 VSAGYGFSVALASDGSLYSWGDNSRGQL--GRTVTSNNPANRPHKVEAP 812



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 138/373 (36%), Gaps = 52/373 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP---YKVRSVVAGSRNSLAI---- 53
            +S  S+ +WG  E GQLG      R+     K   P    K   V A  R+SLA+    
Sbjct: 404 TSSDGSLYSWGWNEYGQLGRNTAPARQDRTPRKVTMPAGVTKFTKVSAEHRHSLALGSDG 463

Query: 54  ---------C-----DDGKTKTENIPSQVNALSN-TKIVQAAIGGWHCLAVDDQGRAYAW 98
                    C     D G  K +  P +V   +   +  + + G  H LA+   G  Y+W
Sbjct: 464 NLYSWGLNDCKQLGRDTGSAKYDVKPGKVPTPAGVAQFTEVSAGYSHSLAIGSDGNLYSW 523

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N+YG+ G     K D+   +   +  P+   P      V+  GT    L       TW
Sbjct: 524 GQNKYGELGRPTSGKYDSSPGM---VAFPEDPKP----VDVSFSGTPGTNLDPNSD-GTW 575

Query: 159 GQPWPPGDIKQISVPV--RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG-QLGTG 215
               PP D  ++   +  R+ G      ++     N  +  D      G   +G Q+ T 
Sbjct: 576 SVTTPPHDHGRVDTVITWRMNGERPDAHLSYRYLGNYLIVFDPD----GGTGFGFQIVTE 631

Query: 216 DTQ---PRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYG-WGRGEHGRLGFGDND 270
             +   P   P   + L  G  + D A     S  +TD   +   W   E  R    D D
Sbjct: 632 GNRLKPPAKDPTKDKHLFDGWFIGDTAYD--FSRPVTDKVTLTAHWSSAESNRWKL-DKD 688

Query: 271 KSSKMVPQKVNLLA----GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
              +   Q V L      G  I Q   G  HS A+  DG ++++G   HG+LG   + T 
Sbjct: 689 NGPESGGQTVTLTPPPARGIRISQADGGDLHSAAVGSDGSLYTWGDNSHGQLG---RDTA 745

Query: 327 GQPMEVPINIPAP 339
            +P   P    AP
Sbjct: 746 DKPDSHPSKAEAP 758


>gi|449456530|ref|XP_004146002.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
          Length = 463

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 190/435 (43%), Gaps = 100/435 (22%)

Query: 2   ASTTSII---AWGSGEDGQLGIGNNEEREWVCVVK----------ALEPYKVRSVVAGSR 48
           A TT+I+   +WG G  GQLG G  E R +   V           AL P ++ S    ++
Sbjct: 53  AGTTAILQLLSWGRGSSGQLGGGIEEIRLYPSPVANLSVPNIHNLALAPGQLPSFSGDNQ 112

Query: 49  NSLAICDDGKTKT--------------------------------EN---IPSQVNALSN 73
           +S    DDG  +                                 EN   +P+  + L +
Sbjct: 113 DS---GDDGSFELGISCGLFHSSLLVNGKVWIWGKGDGGRLGFGHENPVFVPTLNSRLES 169

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
            + +  A+GG H +A++  G+ + WG   +G  G           +  R++V      P+
Sbjct: 170 VRCI--ALGGLHSVALNALGQVFTWGYGGFGALGHS---------VYHRELV------PR 212

Query: 134 LI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-------------ISVP 173
           L+       ++ +A  G H+  +T  G V+TWG+    GD +              +S+P
Sbjct: 213 LVEGSWRGRIKHIATSGAHTAAITESGEVYTWGRD--EGDGRLGLGPGRGPNEGGGLSIP 270

Query: 174 VRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            RV+ L   V  ++ G F  +AL  DG LW WG N   +LG G+     +P PV  L   
Sbjct: 271 CRVRALPAPVAAVSCGGFFTMALGVDGKLWNWGANTNFELGRGNNIGGWEPKPVPSLEDT 330

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            ++ I  GG+HS  LT DG+V  WG G HG+L  G +   ++ VP+ ++ LA + ++ ++
Sbjct: 331 PIIQIVCGGYHSLVLTGDGKVLSWGYGGHGQL--GHSSIQNEKVPRVIDALADKRVIYIA 388

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           C G+ S A+T +G ++ +G     +LG  G       P+EV           DG+    +
Sbjct: 389 CCGSSSAAVTAEGKLYMWGNAKDSQLGVPGLPEVQTSPVEVIF-----LTEDDGLGPYHV 443

Query: 352 AKLVACGGRHTLAIV 366
              VA G  H + +V
Sbjct: 444 LS-VAVGASHAMCLV 457



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 54/199 (27%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLS---------------------------GLT 233
           L +WG    GQLG G  + R  P PV  LS                           G  
Sbjct: 61  LLSWGRGSSGQLGGGIEEIRLYPSPVANLSVPNIHNLALAPGQLPSFSGDNQDSGDDGSF 120

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
            + I+ G +HS+ L  +G+V+ WG+G+ GRLGFG  +     VP   + L  E +  ++ 
Sbjct: 121 ELGISCGLFHSSLLV-NGKVWIWGKGDGGRLGFGHENP--VFVPTLNSRL--ESVRCIAL 175

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLG---YGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           GG HSVAL   G +F++G G  G LG   Y R++              PR     V+  W
Sbjct: 176 GGLHSVALNALGQVFTWGYGGFGALGHSVYHRELV-------------PRL----VEGSW 218

Query: 351 IAKL--VACGGRHTLAIVE 367
             ++  +A  G HT AI E
Sbjct: 219 RGRIKHIATSGAHTAAITE 237


>gi|355694501|gb|AER99690.1| hect domain and RLD 5 [Mustela putorius furo]
          Length = 675

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 120/243 (49%), Gaps = 29/243 (11%)

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK---LI 185
           +   K+ +  V  G  H ++L+ +G          P +        R Q + Q K    I
Sbjct: 2   KLGKKMKIHSVDQGAEHMLILSSDG---------KPFEYNYSIEHARFQCILQEKSIIQI 52

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWH 243
             G +H+LAL + G L+AWG N +GQLG G     S P P  V+ LSG+ LV I+AG  H
Sbjct: 53  TCGDYHSLALSKGGELFAWGQNLHGQLGIGRLFA-SIPTPQLVEHLSGVPLVQISAGKAH 111

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S AL+  G +Y WGR + G+LG G  D      P  V  L  + +  ++CGG+H+  LT 
Sbjct: 112 SMALSMSGNIYSWGRNDLGQLGLGHTDGEE--FPSLVEALDSQKVEFLACGGSHTALLTE 169

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           DG +F+FG G HG+LG+       +P  V          G  V +      VACG RHTL
Sbjct: 170 DGQVFTFGAGKHGQLGHNSTQNELRPRLVT------ELTGIRVTQ------VACGRRHTL 217

Query: 364 AIV 366
           A V
Sbjct: 218 AYV 220



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 14/212 (6%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKL--IAV 187
           + Q+  G  HS+ L++ G ++ WGQ    G +        I  P  V+ L  V L  I+ 
Sbjct: 49  IIQITCGDYHSLALSKGGELFAWGQNLH-GQLGIGRLFASIPTPQLVEHLSGVPLVQISA 107

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H++AL   G +++WG N+ GQLG G T     P  V+ L    +  +A GG H+  L
Sbjct: 108 GKAHSMALSMSGNIYSWGRNDLGQLGLGHTDGEEFPSLVEALDSQKVEFLACGGSHTALL 167

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GH 306
           T+DG+V+ +G G+HG+L  G N   +++ P+ V  L G  + QV+CG  H++A   D G 
Sbjct: 168 TEDGQVFTFGAGKHGQL--GHNSTQNELRPRLVTELTGIRVTQVACGRRHTLAYVSDLGK 225

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           +FSFG G  G+LG G   T  Q + +P+ +P+
Sbjct: 226 VFSFGSGKEGQLGNGG--THNQLIPLPMKLPS 255



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 42/279 (15%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVN----ALSNTKIVQAAIGGWHCL 87
           +K  +  K+ SV  G+ + L +  DGK    N   +       L    I+Q   G +H L
Sbjct: 1   IKLGKKMKIHSVDQGAEHMLILSSDGKPFEYNYSIEHARFQCILQEKSIIQITCGDYHSL 60

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVA 140
           A+   G  +AWG N +GQ G         GR+      IP    P+L+       + Q++
Sbjct: 61  ALSKGGELFAWGQNLHGQLG--------IGRLFAS---IP---TPQLVEHLSGVPLVQIS 106

Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAF 190
           AG  HS+ L+  G++++WG+     D+ Q+          P  V+ L  ++V+ +A G  
Sbjct: 107 AGKAHSMALSMSGNIYSWGR----NDLGQLGLGHTDGEEFPSLVEALDSQKVEFLACGGS 162

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H   L EDG ++ +G  ++GQLG   TQ   +P  V  L+G+ +  +A G  H+ A   D
Sbjct: 163 HTALLTEDGQVFTFGAGKHGQLGHNSTQNELRPRLVTELTGIRVTQVACGRRHTLAYVSD 222

Query: 251 -GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            G+V+ +G G+ G+LG G     ++++P  + L + ED+
Sbjct: 223 LGKVFSFGSGKEGQLGNGGTH--NQLIPLPMKLPSNEDL 259



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 25/180 (13%)

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           GA H L L  DG  + +               R Q I    L   +++ I  G +HS AL
Sbjct: 15  GAEHMLILSSDGKPFEYN--------YSIEHARFQCI----LQEKSIIQITCGDYHSLAL 62

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +  GE++ WG+  HG+LG G    +S   PQ V  L+G  +VQ+S G  HS+AL+  G+I
Sbjct: 63  SKGGELFAWGQNLHGQLGIG-RLFASIPTPQLVEHLSGVPLVQISAGKAHSMALSMSGNI 121

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +S+GR D G+LG G   T G+        P+   A D        + +ACGG HT  + E
Sbjct: 122 YSWGRNDLGQLGLGH--TDGE------EFPSLVEALDSQK----VEFLACGGSHTALLTE 169



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 52/229 (22%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWG    GQLGIG    R +  +                                 P 
Sbjct: 68  LFAWGQNLHGQLGIG----RLFASI-------------------------------PTPQ 92

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V  LS   +VQ + G  H +A+   G  Y+WG N+ GQ G      ++   ++  + + 
Sbjct: 93  LVEHLSGVPLVQISAGKAHSMALSMSGNIYSWGRNDLGQLGLGHTDGEEFPSLV--EALD 150

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGLEQ 181
            Q+      V  +A GG+H+ +LT +G V+T+G     G +   S      P  V  L  
Sbjct: 151 SQK------VEFLACGGSHTALLTEDGQVFTFG-AGKHGQLGHNSTQNELRPRLVTELTG 203

Query: 182 VKL--IAVGAFHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +++  +A G  H LA   D G ++++G+ + GQLG G T  +  P+P++
Sbjct: 204 IRVTQVACGRRHTLAYVSDLGKVFSFGSGKEGQLGNGGTHNQLIPLPMK 252



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 23/170 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           ++ + +I +WG  + GQLG+G+ +  E+  +V+AL+  KV  +  G  ++  + +DG+  
Sbjct: 115 LSMSGNIYSWGRNDLGQLGLGHTDGEEFPSLVEALDSQKVEFLACGGSHTALLTEDGQVF 174

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G  H LA V D G+ +++G  + 
Sbjct: 175 TFGAGKHGQLGHNSTQNELRPRLVTELTGIRVTQVACGRRHTLAYVSDLGKVFSFGSGKE 234

Query: 104 GQCGEEPERKDDTGRILR----RDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           GQ G            ++     D+    R + K ++  + AGG  S++L
Sbjct: 235 GQLGNGGTHNQLIPLPMKLPSNEDLKFESRTSEKELI--MIAGGNQSILL 282


>gi|428178444|gb|EKX47319.1| hypothetical protein GUITHDRAFT_42892, partial [Guillardia theta
           CCMP2712]
          Length = 240

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 17/248 (6%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G +H   V   G  Y WG N +GQ G +  R       L           P + V   + 
Sbjct: 1   GPYHAALVSGLGDVYTWGANFFGQLGRDYSRLWSLPSELH---------LPNVFVVSASC 51

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLAL 195
           GG H+++L++EG V+++G         G+ +  S+P  +  LE  ++  IA G  H++A+
Sbjct: 52  GGMHTLLLSKEGKVFSFGDGANGRLGHGNCRNYSLPQPIASLESKRITFIAAGWTHSMAI 111

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW--HSTALTDDGEV 253
            +DG L+ WG    G+LG G+     +P  V  L  + +  + A G   HS    ++G V
Sbjct: 112 DDDGKLFTWGCGNAGRLGHGNVLDVWRPRFVDRLYRIRMKAMMASGSYDHSAVCCENGTV 171

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG GEHG+LG G  +   + V  K    A   IV+VSCGG H+ A+T DG + ++GRG
Sbjct: 172 WTWGLGEHGQLGVGSTESHLEPVLVKSMADANLHIVEVSCGGAHTAAVTNDGTLLTWGRG 231

Query: 314 DHGRLGYG 321
           D G+LG+G
Sbjct: 232 DWGQLGHG 239



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 122/222 (54%), Gaps = 23/222 (10%)

Query: 59  TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
           ++  ++PS+++ L N  +V A+ GG H L +  +G+ +++G    G+ G           
Sbjct: 30  SRLWSLPSELH-LPNVFVVSASCGGMHTLLLSKEGKVFSFGDGANGRLGHGN-------- 80

Query: 119 ILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISV 172
              R+  +PQ  A      +  +AAG THS+ +  +G ++TWG         G++  +  
Sbjct: 81  --CRNYSLPQPIASLESKRITFIAAGWTHSMAIDDDGKLFTWGCGNAGRLGHGNVLDVWR 138

Query: 173 PVRVQGLEQVKL---IAVGAF-HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           P  V  L ++++   +A G++ H+    E+G +W WG  E+GQLG G T+   +P+ V+ 
Sbjct: 139 PRFVDRLYRIRMKAMMASGSYDHSAVCCENGTVWTWGLGEHGQLGVGSTESHLEPVLVKS 198

Query: 229 LS--GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           ++   L +V+++ GG H+ A+T+DG +  WGRG+ G+LG G+
Sbjct: 199 MADANLHIVEVSCGGAHTAAVTNDGTLLTWGRGDWGQLGHGN 240



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 21/234 (8%)

Query: 142 GGTHSVVLTREGHVWTWGQPWPPG---DIKQI-SVPVRVQGLEQVKLIA--VGAFHNLAL 195
           G  H+ +++  G V+TWG  +      D  ++ S+P  +  L  V +++   G  H L L
Sbjct: 1   GPYHAALVSGLGDVYTWGANFFGQLGRDYSRLWSLPSELH-LPNVFVVSASCGGMHTLLL 59

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
            ++G ++++G+   G+LG G+ +  S P P+  L    +  IAAG  HS A+ DDG+++ 
Sbjct: 60  SKEGKVFSFGDGANGRLGHGNCRNYSLPQPIASLESKRITFIAAGWTHSMAIDDDGKLFT 119

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT--HSVALTRDGHIFSFGRG 313
           WG G  GRLG G+     +  P+ V+ L    +  +   G+  HS     +G ++++G G
Sbjct: 120 WGCGNAGRLGHGNVLDVWR--PRFVDRLYRIRMKAMMASGSYDHSAVCCENGTVWTWGLG 177

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +HG+LG G   +  +P+ V     A  +  +          V+CGG HT A+  
Sbjct: 178 EHGQLGVGSTESHLEPVLVKSMADANLHIVE----------VSCGGAHTAAVTN 221



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 49/243 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEP-YKVRSVVAGSRNSLAICDDGKT------ 59
           +  WG+   GQLG   +  R W    +   P   V S   G  ++L +  +GK       
Sbjct: 14  VYTWGANFFGQLG--RDYSRLWSLPSELHLPNVFVVSASCGGMHTLLLSKEGKVFSFGDG 71

Query: 60  ----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                     +  ++P  + +L + +I   A G  H +A+DD G+ + WG    G+ G  
Sbjct: 72  ANGRLGHGNCRNYSLPQPIASLESKRITFIAAGWTHSMAIDDDGKLFTWGCGNAGRLGH- 130

Query: 110 PERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGT--HSVVLTREGHVWTWGQPWPPG 165
                  G +L  D+  P+      ++ ++ + A G+  HS V    G VWTWG     G
Sbjct: 131 -------GNVL--DVWRPRFVDRLYRIRMKAMMASGSYDHSAVCCENGTVWTWGL----G 177

Query: 166 DIKQISV--------PVRVQGLEQVKL----IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           +  Q+ V        PV V+ +    L    ++ G  H  A+  DG L  WG  ++GQLG
Sbjct: 178 EHGQLGVGSTESHLEPVLVKSMADANLHIVEVSCGGAHTAAVTNDGTLLTWGRGDWGQLG 237

Query: 214 TGD 216
            G+
Sbjct: 238 HGN 240


>gi|148263849|ref|YP_001230555.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
 gi|146397349|gb|ABQ25982.1| regulator of chromosome condensation, RCC1 [Geobacter
           uraniireducens Rf4]
          Length = 417

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 161/354 (45%), Gaps = 49/354 (13%)

Query: 38  YKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           ++  + +A   N      D        P +V+ L   K V  AIG  H LA  +     A
Sbjct: 47  FRNSTTMAWGYNGFGQLGDVSLNNSASPVKVSGLVGAKGV--AIGADHSLAFFNNSTVRA 104

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI----------VRQVAAGGTHSV 147
           WG N +GQ G         G     +I +P +    LI          V  VAAGG HS+
Sbjct: 105 WGYNGFGQLGN--------GTTTYSNIPVPVKT---LIGTASSINLTGVTAVAAGGFHSL 153

Query: 148 VLTREGHVWTWGQ--------------PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            L + G VW+WG+              P   G +  ++ P    GL  +  IA G  H+L
Sbjct: 154 AL-KNGTVWSWGENTNGQLGRNVTDTSPLIAGQV--MTDPPNGIGLTSITRIAAGGSHSL 210

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL   GA+WAWG N YGQLG G    +  P+ + G++ + +V IAAGG  S A+ ++G V
Sbjct: 211 ALDSSGAVWAWGYNGYGQLGDGSLVDKKLPVKLTGIT-VPVVAIAAGGAFSVAVDNNGAV 269

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE---DIVQVSCGGTHSVALTRDGHIFSF 310
           + WG    G+L  G+   +   VP +V L  G    +I  ++ G  H +AL  +G I+++
Sbjct: 270 WAWGYNGFGQL--GNKSTTDSNVPVQVVLEDGTPLPNIKAIAAGLDHVLALDSNGAIWAW 327

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G    G+LG    + +  P++VP    A  ++   VD       +   G HTLA
Sbjct: 328 GYNGLGQLGNNTTINSSTPVQVPAFTAALIDSPFTVDG---VNPILAAGHHTLA 378



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 165/382 (43%), Gaps = 65/382 (17%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV------RSVVAGSRNSLAICDD-- 56
           ++ +AWG    GQLG         V +  +  P KV      + V  G+ +SLA  ++  
Sbjct: 50  STTMAWGYNGFGQLGD--------VSLNNSASPVKVSGLVGAKGVAIGADHSLAFFNNST 101

Query: 57  --------------GKTKTENIPSQVNALSNTK-------IVQAAIGGWHCLAVDDQGRA 95
                         G T   NIP  V  L  T        +   A GG+H LA+ + G  
Sbjct: 102 VRAWGYNGFGQLGNGTTTYSNIPVPVKTLIGTASSINLTGVTAVAAGGFHSLALKN-GTV 160

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG N  GQ G      D +  I  + +  P        + ++AAGG+HS+ L   G V
Sbjct: 161 WSWGENTNGQLGRN--VTDTSPLIAGQVMTDPPNGIGLTSITRIAAGGSHSLALDSSGAV 218

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           W WG         G +    +PV++ G+   V  IA G   ++A+  +GA+WAWG N +G
Sbjct: 219 WAWGYNGYGQLGDGSLVDKKLPVKLTGITVPVVAIAAGGAFSVAVDNNGAVWAWGYNGFG 278

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDI---AAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           QLG   T   + P+ V    G  L +I   AAG  H  AL  +G ++ WG    G+LG  
Sbjct: 279 QLGNKSTTDSNVPVQVVLEDGTPLPNIKAIAAGLDHVLALDSNGAIWAWGYNGLGQLG-- 336

Query: 268 DNDKSSKMVPQKVNLLAG---------EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
           +N   +   P +V              + +  +   G H++A   DG ++++G   +G+L
Sbjct: 337 NNTTINSSTPVQVPAFTAALIDSPFTVDGVNPILAAGHHTLARKADGTLWAWGDNAYGQL 396

Query: 319 GYGRKVTTGQPMEVPINIPAPR 340
           G+        P  +   I APR
Sbjct: 397 GF------APPSNLETFITAPR 412


>gi|330836304|ref|YP_004410945.1| hypothetical protein [Sphaerochaeta coccoides DSM 17374]
 gi|329748207|gb|AEC01563.1| Listeria/Bacterioides repeat-containing protein [Sphaerochaeta
           coccoides DSM 17374]
          Length = 786

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 172/362 (47%), Gaps = 50/362 (13%)

Query: 10  WGSGED--GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK--TKTEN-- 63
           W +GE+  GQLG+G+N +R     V ++    V +V AG ++++ +  DG      EN  
Sbjct: 434 WATGENKAGQLGVGDNTDRSTPVQVSSMGS-DVAAVSAGEKHTMILKKDGTLWATGENKY 492

Query: 64  ---------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                           P QV+++  + +   + G  H + +   G  +A G N  GQ G 
Sbjct: 493 GQLGLGDSDSGIDKSTPMQVSSM-GSDVAAVSTGASHTMILKKNGTLWATGQNNDGQLG- 550

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                D +    R   V  Q  A    V  V+AG  H+++L ++G +W  G+ +      
Sbjct: 551 ---LGDSSSGTDRSTPV--QVLAMGSDVEAVSAGSYHTMILKKDGTLWATGRNYDGQLGD 605

Query: 165 GDIKQISVPVRVQG-------LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG---T 214
           G     + PV+V+        +  VK ++ G FH + L++DG LW  G N+YGQLG   +
Sbjct: 606 GTTTSRTTPVQVKASPTFGDFMTNVKAVSAGGFHTMILKKDGTLWVTGRNQYGQLGDGTS 665

Query: 215 GDTQPRSQPIPVQGLSGL----TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           G T  +S P+ V+  SG+     +V ++AG  ++  L  DG ++  GR   G+LG G  +
Sbjct: 666 GITNNKSTPVQVRDSSGVGFMTDVVAVSAGLHYTIILKKDGTLWATGRNNFGQLGVG--N 723

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           K+ +  P KV  + G D+  VS G  H++   +DG +++ G   +G+LG         P 
Sbjct: 724 KTDRKTPVKVAFM-GTDVAAVSAGYNHTLIQKKDGSLWATGFNTNGQLGVSDNTNRSTPE 782

Query: 331 EV 332
           +V
Sbjct: 783 QV 784



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 18/239 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL-EQVKLIAVGAF 190
           ++ V+AG  H+++L  +G +W  G+        GD    S PV+V  +   V  ++ G  
Sbjct: 414 IKSVSAGYYHTMILKTDGTLWATGENKAGQLGVGDNTDRSTPVQVSSMGSDVAAVSAGEK 473

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQP---RSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           H + L++DG LWA G N+YGQLG GD+     +S P+ V  + G  +  ++ G  H+  L
Sbjct: 474 HTMILKKDGTLWATGENKYGQLGLGDSDSGIDKSTPMQVSSM-GSDVAAVSTGASHTMIL 532

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDK-SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
             +G ++  G+   G+LG GD+   + +  P +V L  G D+  VS G  H++ L +DG 
Sbjct: 533 KKNGTLWATGQNNDGQLGLGDSSSGTDRSTPVQV-LAMGSDVEAVSAGSYHTMILKKDGT 591

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +++ GR   G+LG G    T      P+ + A    GD +      K V+ GG HT+ +
Sbjct: 592 LWATGRNYDGQLGDG----TTTSRTTPVQVKASPTFGDFMTN---VKAVSAGGFHTMIL 643



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 111/257 (43%), Gaps = 57/257 (22%)

Query: 9   AWGSGEDGQLGIGNNE---EREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           A G   DGQLG+G++    +R     V A+    V +V AGS +++ +            
Sbjct: 540 ATGQNNDGQLGLGDSSSGTDRSTPVQVLAMGS-DVEAVSAGSYHTMILKKDGTLWATGRN 598

Query: 54  ----CDDGKTKTENIPSQVNA-------LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                 DG T +   P QV A       ++N K V A  GG+H + +   G  +  G N+
Sbjct: 599 YDGQLGDGTTTSRTTPVQVKASPTFGDFMTNVKAVSA--GGFHTMILKKDGTLWVTGRNQ 656

Query: 103 YGQCGE-----------EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
           YGQ G+             + +D +G     D+V             V+AG  ++++L +
Sbjct: 657 YGQLGDGTSGITNNKSTPVQVRDSSGVGFMTDVV------------AVSAGLHYTIILKK 704

Query: 152 EGHVWTWGQ----PWPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGN 206
           +G +W  G+        G+      PV+V  +   V  ++ G  H L  ++DG+LWA G 
Sbjct: 705 DGTLWATGRNNFGQLGVGNKTDRKTPVKVAFMGTDVAAVSAGYNHTLIQKKDGSLWATGF 764

Query: 207 NEYGQLGTGDTQPRSQP 223
           N  GQLG  D   RS P
Sbjct: 765 NTNGQLGVSDNTNRSTP 781


>gi|330800861|ref|XP_003288451.1| hypothetical protein DICPUDRAFT_79261 [Dictyostelium purpureum]
 gi|325081510|gb|EGC35023.1| hypothetical protein DICPUDRAFT_79261 [Dictyostelium purpureum]
          Length = 1909

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/184 (33%), Positives = 101/184 (54%), Gaps = 11/184 (5%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ------PWPPGDIKQIS---VPVRVQGLEQVKLIAVGA 189
           +++G  +S  LT  G V+ WG+      P P   I QI    +P++++ L  + ++++G 
Sbjct: 639 ISSGSYYSAALTENGDVYMWGRGSVKNPPVPVLGIPQIEDQLLPIKLESLTDIVVVSIGF 698

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           +H+ A++ +G L  WG  E GQLG GDTQ + +P  +Q L+   +  +  G  H+  LT 
Sbjct: 699 YHSAAVRANGELLTWGVGEEGQLGHGDTQNQVEPKVIQSLTSFWITQVQCGEKHTICLTK 758

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           +G+VY WG  E+G+LG GD  +  K  P  V  L   +++Q++ G TH   LT    +  
Sbjct: 759 NGKVYTWGSSEYGQLGLGDTTRYCK--PMPVTALEKYNVLQIASGSTHCAVLTNSKEVLV 816

Query: 310 FGRG 313
           FG G
Sbjct: 817 FGNG 820



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 130/297 (43%), Gaps = 51/297 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           ++ WG GE+GQLG                                     G T+ +  P 
Sbjct: 710 LLTWGVGEEGQLG------------------------------------HGDTQNQVEPK 733

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            + +L++  I Q   G  H + +   G+ Y WG +EYGQ G       DT R  +    +
Sbjct: 734 VIQSLTSFWITQVQCGEKHTICLTKNGKVYTWGSSEYGQLG-----LGDTTRYCKP---M 785

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKL-- 184
           P     K  V Q+A+G TH  VLT    V  +G     G    IS+P  V  L+ + +  
Sbjct: 786 PVTALEKYNVLQIASGSTHCAVLTNSKEVLVFGNGAAMGAASIISIPTLVPSLKYLHIDK 845

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +  G +   A+ E G ++ WG  +  +LG G+ Q  S P  V+ L   ++  I+ GG H+
Sbjct: 846 LCCGHYSTAAISECGDVYTWGTGQ--ELGHGNNQTESTPKLVEALRNQSIRQISCGGRHT 903

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             LTD G ++  G+   G+LG    D++    P+K+  L     + VSCG  +++AL
Sbjct: 904 AFLTDSGRIFTSGKDSFGQLGHQAGDQNK---PKKIESLTKTTFISVSCGENYNIAL 957



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 130/317 (41%), Gaps = 63/317 (19%)

Query: 58  KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
           K +++  P ++   + + I   + G ++  A+ + G  Y WG    G     P       
Sbjct: 618 KEQSQPTPERLPNFNVSDICSISSGSYYSAALTENGDVYMWG---RGSVKNPPVPVLGIP 674

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVP 173
           +I   D ++P +      +  V+ G  HS  +   G + TWG         GD +    P
Sbjct: 675 QI--EDQLLPIKLESLTDIVVVSIGFYHSAAVRANGELLTWGVGEEGQLGHGDTQNQVEP 732

Query: 174 VRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
             +Q L    +  +  G  H + L ++G ++ WG++EYGQLG GDT    +P+PV  L  
Sbjct: 733 KVIQSLTSFWITQVQCGEKHTICLTKNGKVYTWGSSEYGQLGLGDTTRYCKPMPVTALEK 792

Query: 232 LTLVDIAAGGWHSTALTDD----------------------------------------- 250
             ++ IA+G  H   LT+                                          
Sbjct: 793 YNVLQIASGSTHCAVLTNSKEVLVFGNGAAMGAASIISIPTLVPSLKYLHIDKLCCGHYS 852

Query: 251 -------GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
                  G+VY WG G+   LG G+N   S   P+ V  L  + I Q+SCGG H+  LT 
Sbjct: 853 TAAISECGDVYTWGTGQE--LGHGNNQTES--TPKLVEALRNQSIRQISCGGRHTAFLTD 908

Query: 304 DGHIFSFGRGDHGRLGY 320
            G IF+ G+   G+LG+
Sbjct: 909 SGRIFTSGKDSFGQLGH 925



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 87/153 (56%), Gaps = 9/153 (5%)

Query: 185 IAVGAFHNLALQEDGALWAWG-----NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           I+ G++++ AL E+G ++ WG     N     LG    + +  PI ++ L+ + +V I  
Sbjct: 639 ISSGSYYSAALTENGDVYMWGRGSVKNPPVPVLGIPQIEDQLLPIKLESLTDIVVVSI-- 696

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G +HS A+  +GE+  WG GE G+LG GD    +++ P+ +  L    I QV CG  H++
Sbjct: 697 GFYHSAAVRANGELLTWGVGEEGQLGHGDT--QNQVEPKVIQSLTSFWITQVQCGEKHTI 754

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            LT++G ++++G  ++G+LG G      +PM V
Sbjct: 755 CLTKNGKVYTWGSSEYGQLGLGDTTRYCKPMPV 787


>gi|307106099|gb|EFN54346.1| hypothetical protein CHLNCDRAFT_24715 [Chlorella variabilis]
          Length = 393

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 145/290 (50%), Gaps = 29/290 (10%)

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
           +E +P  V AL    +   A GG H  AVDD G  Y WG N+ GQ G + E   D+   L
Sbjct: 24  SEELPRVVRALLGVPLKAVACGGAHTAAVDDSGTVYTWGLNDKGQLGHDSE---DSEVGL 80

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVR 175
             ++ +P+R      V  ++AG  H++ +   G VW++     GQ     D+  +  P  
Sbjct: 81  PGEVAMPER------VVALSAGYYHTLCVGESGSVWSFGCNGKGQLGLGKDVVLVREPRL 134

Query: 176 VQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS--------QPIP 225
           V+ L+  K++AV  G  H+LAL   G +++WGN   G+LG G   PR          P  
Sbjct: 135 VKSLQDNKVVAVAAGMEHSLALTAGGEVYSWGNAANGRLGHGSATPRRLFGSSIEFLPRL 194

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V+    L +  ++AG  HS A++  G+ + WG G+  +LGFG ++  +   P  +  L G
Sbjct: 195 VRAFEALRVEQVSAGQMHSAAVSTAGDAFLWGYGKFHQLGFGSDEDLAG--PTVLPPLKG 252

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG--RKVTTGQPMEVP 333
                V+CG  HS+AL   GH+ ++G   +G LG G  ++    +P +VP
Sbjct: 253 -STAAVACGSLHSLALQYGGHVLAWGTNQNGVLGQGHEKQQQPKRPSKVP 301



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 148/338 (43%), Gaps = 48/338 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI- 64
           ++  WG  + GQLG  ++E+ E     +   P +V ++ AG  ++L + + G   +    
Sbjct: 57  TVYTWGLNDKGQLGH-DSEDSEVGLPGEVAMPERVVALSAGYYHTLCVGESGSVWSFGCN 115

Query: 65  ----------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                           P  V +L + K+V  A G  H LA+   G  Y+WG    G+ G 
Sbjct: 116 GKGQLGLGKDVVLVREPRLVKSLQDNKVVAVAAGMEHSLALTAGGEVYSWGNAANGRLGH 175

Query: 109 EPERKDDTGRILRRDI-VIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QP 161
                    R+    I  +P+  R    L V QV+AG  HS  ++  G  + WG      
Sbjct: 176 GSATPR---RLFGSSIEFLPRLVRAFEALRVEQVSAGQMHSAAVSTAGDAFLWGYGKFHQ 232

Query: 162 WPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              G  + ++ P  +  L+     +A G+ H+LALQ  G + AWG N+ G LG G  + +
Sbjct: 233 LGFGSDEDLAGPTVLPPLKGSTAAVACGSLHSLALQYGGHVLAWGTNQNGVLGQGH-EKQ 291

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG--------------RGEHGRLGF 266
            QP     + G++   IAAG  HS A+T  G++Y WG               G  G+LG 
Sbjct: 292 QQPKRPSKVPGVSAEQIAAGWKHSAAVTGSGKLYTWGWGGSQGTALSFEGRTGTGGQLGH 351

Query: 267 G-DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           G D D  S   P  V+ L+  +   V+CG  H+ A+  
Sbjct: 352 GNDFDYWS---PHHVDWLSLTETDLVACGMNHTAAIVE 386



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           +G G+ GRLG    + +S+ +P+ V  L G  +  V+CGG H+ A+   G ++++G  D 
Sbjct: 8   FGNGDCGRLGH-SLEYASEELPRVVRALLGVPLKAVACGGAHTAAVDDSGTVYTWGLNDK 66

Query: 316 GRLGYGRKVT-TGQPMEVPI 334
           G+LG+  + +  G P EV +
Sbjct: 67  GQLGHDSEDSEVGLPGEVAM 86


>gi|449518441|ref|XP_004166250.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus]
          Length = 463

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 155/325 (47%), Gaps = 49/325 (15%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P+  + L + + +  A+GG H +A++  G+ + WG   +G  G           +  R+
Sbjct: 160 VPTLNSRLESVRCI--ALGGLHSVALNALGQVFTWGYGGFGALGHS---------VYHRE 208

Query: 124 IVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ------- 169
           +V      P+L+       ++ +A  G H+  +T  G V+TWG+    GD +        
Sbjct: 209 LV------PRLVEGSWRGRIKHIATSGAHTAAITESGEVYTWGRD--EGDGRLGLGPGRG 260

Query: 170 ------ISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                 +S+P RV+ L   V  ++ G F  +AL  DG LW WG N   +LG G+     +
Sbjct: 261 PNEGGGLSIPCRVRALPAPVAAVSCGGFFTMALGVDGKLWNWGANTNFELGRGNNIGGWE 320

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P PV  L    ++ I  GG+HS ALT DG+V  WG G HG+L  G +   ++ VP+ ++ 
Sbjct: 321 PKPVPSLEDTPIIQIVCGGYHSLALTGDGKVLSWGYGGHGQL--GHSSIQNEKVPRVIDA 378

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRN 341
           LA + +  ++C G+ S A+T +G ++ +G     +LG  G       P+EV         
Sbjct: 379 LADKRVSYIACCGSSSAAVTAEGKLYMWGNAKDSQLGVPGLPEVQTSPVEVIF-----LT 433

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIV 366
             DG+    +   VA G  H + +V
Sbjct: 434 EDDGLGPYHVLS-VAVGASHAMCLV 457



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 109/236 (46%), Gaps = 23/236 (9%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           ++ G  HS +L   G VW WG+        G    + VP     LE V+ IA+G  H++A
Sbjct: 124 ISCGLFHSSLLV-NGKVWIWGKGDGGRLGFGHENPVFVPTLNSRLESVRCIALGGLHSVA 182

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L   G ++ WG   +G LG         P  V+G     +  IA  G H+ A+T+ GEVY
Sbjct: 183 LNALGQVFTWGYGGFGALGHSVYHRELVPRLVEGSWRGRIKHIATSGAHTAAITESGEVY 242

Query: 255 GWGRGE-----HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            WGR E         G G N+     +P +V  L    +  VSCGG  ++AL  DG +++
Sbjct: 243 TWGRDEGDGRLGLGPGRGPNEGGGLSIPCRVRALPAP-VAAVSCGGFFTMALGVDGKLWN 301

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +G   +  LG G  +   +P  VP     P           I ++V CGG H+LA+
Sbjct: 302 WGANTNFELGRGNNIGGWEPKPVPSLEDTP-----------IIQIV-CGGYHSLAL 345



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 134/324 (41%), Gaps = 39/324 (12%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------- 61
           WG G+ G+LG G+        +   LE   VR +  G  +S+A+   G+  T        
Sbjct: 142 WGKGDGGRLGFGHENPVFVPTLNSRLE--SVRCIALGGLHSVALNALGQVFTWGYGGFGA 199

Query: 62  --------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE--YGQCGEEPE 111
                   E +P  V      +I   A  G H  A+ + G  Y WG +E           
Sbjct: 200 LGHSVYHRELVPRLVEGSWRGRIKHIATSGAHTAAITESGEVYTWGRDEGDGRLGLGPGR 259

Query: 112 RKDDTGRILRRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIK 168
             ++ G      + IP R  A    V  V+ GG  ++ L  +G +W WG    +  G   
Sbjct: 260 GPNEGG-----GLSIPCRVRALPAPVAAVSCGGFFTMALGVDGKLWNWGANTNFELGRGN 314

Query: 169 QIS--VPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            I    P  V  LE   +I +  G +H+LAL  DG + +WG   +GQLG    Q    P 
Sbjct: 315 NIGGWEPKPVPSLEDTPIIQIVCGGYHSLALTGDGKVLSWGYGGHGQLGHSSIQNEKVPR 374

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            +  L+   +  IA  G  S A+T +G++Y WG  +  +LG        +  P +V  L 
Sbjct: 375 VIDALADKRVSYIACCGSSSAAVTAEGKLYMWGNAKDSQLGV-PGLPEVQTSPVEVIFLT 433

Query: 285 GED------IVQVSCGGTHSVALT 302
            +D      ++ V+ G +H++ L 
Sbjct: 434 EDDGLGPYHVLSVAVGASHAMCLV 457



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 54/199 (27%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLS---------------------------GLT 233
           L +WG    GQLG G  + R  P PV  LS                           G  
Sbjct: 61  LLSWGRGSSGQLGGGIEEIRLYPSPVANLSVPNIHTLALAPGQLPSFSGDNQDSGDDGSF 120

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
            + I+ G +HS+ L  +G+V+ WG+G+ GRLGFG  +     VP   + L  E +  ++ 
Sbjct: 121 ELGISCGLFHSSLLV-NGKVWIWGKGDGGRLGFGHENP--VFVPTLNSRL--ESVRCIAL 175

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLG---YGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           GG HSVAL   G +F++G G  G LG   Y R++              PR     V+  W
Sbjct: 176 GGLHSVALNALGQVFTWGYGGFGALGHSVYHRELV-------------PRL----VEGSW 218

Query: 351 IAKL--VACGGRHTLAIVE 367
             ++  +A  G HT AI E
Sbjct: 219 RGRIKHIATSGAHTAAITE 237



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 40/139 (28%)

Query: 252 EVYGWGRGEHGRLGFG----------------DNDKSSKMVPQKVNLLAGEDI------- 288
           ++  WGRG  G+LG G                 N  +  + P ++   +G++        
Sbjct: 60  QLLSWGRGSSGQLGGGIEEIRLYPSPVANLSVPNIHTLALAPGQLPSFSGDNQDSGDDGS 119

Query: 289 --VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
             + +SCG  HS +L  +G ++ +G+GD GRLG+G         E P+ +P   +  + V
Sbjct: 120 FELGISCGLFHS-SLLVNGKVWIWGKGDGGRLGFGH--------ENPVFVPTLNSRLESV 170

Query: 347 DRRWIAKLVACGGRHTLAI 365
                 + +A GG H++A+
Sbjct: 171 ------RCIALGGLHSVAL 183


>gi|297696825|ref|XP_002825580.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1 [Pongo abelii]
          Length = 4864

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4050 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4084

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4085 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4136

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4137 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4185

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4186 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4245

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ LLAG  I  V+ G 
Sbjct: 4246 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPLLAGVIIEDVAVGA 4303

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4304 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4340



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4003 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4051

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4052 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4111

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4112 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4171

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4172 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4229

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4230 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4259



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4033 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4085

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4086 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4145

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4146 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4205

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4206 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4263

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4264 YTFGQDRLIGLPEGRARNHNRPQQIPLLA--------GV----IIEDVAVGAEHTLAL 4309



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4098 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4157

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4158 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4217

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4218 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4269

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4270 RLIGLPEGRARNHNRPQQIPLLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4329

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4330 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4362



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|325180681|emb|CCA15086.1| RCC1 and BTB domaincontaining protein putative [Albugo laibachii
           Nc14]
          Length = 554

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 146/322 (45%), Gaps = 38/322 (11%)

Query: 59  TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
           T    +P+ ++   N KI+  A G      + + G  +  G N+ GQCG     +  + R
Sbjct: 29  TVDRTLPTPISFCHNVKILDVACGNEQTAFLFETGDVFTCGYNDSGQCGIGSTSRVQSLR 88

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPV 174
           +      +P      +   + A G  H   ++R G ++T+G         G    I+ P 
Sbjct: 89  L------VPALVTEDIAHIRSANGCEHLTAISRSGALYTFGFNSRGQLGHGSTNPITTPT 142

Query: 175 RVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           +++ L    ++ V    FH + +  +G L+A+G N+ GQLG  D   R  P+P+   +  
Sbjct: 143 KIKDLASYHVVEVACSYFHTIVMTMEGTLYAFGRNDLGQLGIDDGMDRHVPVPLTYFNSR 202

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG---DNDKSSKMVPQKVNLLAGEDIV 289
            ++ +A G  H+     +G V  +G+ +HG+LG G   D   S  ++   ++ L    + 
Sbjct: 203 PVLAVACGQHHTVVSLTNGGVVAFGKNDHGQLGTGYTLDYHASPSLLAAPLDSLV---VP 259

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            ++CG  H++AL   G ++SFGR D+G+LG+G +    +P  +                +
Sbjct: 260 SLACGYYHTIALAEHGSVYSFGRNDYGQLGHGHRHHLSEPTLI----------------K 303

Query: 350 WIAKL----VACGGRHTLAIVE 367
            +AK     V CG  HTL + E
Sbjct: 304 ALAKTHAVQVTCGCYHTLVLSE 325



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 124/261 (47%), Gaps = 18/261 (6%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           +++A G  H  A+   G  Y +G N  GQ G        T   ++              V
Sbjct: 101 IRSANGCEHLTAISRSGALYTFGFNSRGQLGHGSTNPITTPTKIKD--------LASYHV 152

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLIAVGAF 190
            +VA    H++V+T EG ++ +G+          G  + + VP+       V  +A G  
Sbjct: 153 VEVACSYFHTIVMTMEGTLYAFGRNDLGQLGIDDGMDRHVPVPLTYFNSRPVLAVACGQH 212

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPR--SQPIPVQGLSGLTLVDIAAGGWHSTALT 248
           H +    +G + A+G N++GQLGTG T     S  +    L  L +  +A G +H+ AL 
Sbjct: 213 HTVVSLTNGGVVAFGKNDHGQLGTGYTLDYHASPSLLAAPLDSLVVPSLACGYYHTIALA 272

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           + G VY +GR ++G+LG G     S+  P  +  LA    VQV+CG  H++ L+ DG ++
Sbjct: 273 EHGSVYSFGRNDYGQLGHGHRHHLSE--PTLIKALAKTHAVQVTCGCYHTLVLSEDGKVY 330

Query: 309 SFGRGDHGRLGYGRKVTTGQP 329
            FGR +HG+LG G  +    P
Sbjct: 331 PFGRNNHGQLGLGNLIDCTSP 351



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 44/332 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKAL---EPYKVRS------VVAGSR--- 48
           +  T  +   G  + GQ GIG+    + + +V AL   +   +RS      + A SR   
Sbjct: 59  LFETGDVFTCGYNDSGQCGIGSTSRVQSLRLVPALVTEDIAHIRSANGCEHLTAISRSGA 118

Query: 49  ------NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                 NS      G T     P+++  L++  +V+ A   +H + +  +G  YA+G N+
Sbjct: 119 LYTFGFNSRGQLGHGSTNPITTPTKIKDLASYHVVEVACSYFHTIVMTMEGTLYAFGRND 178

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            GQ G      DD    + R + +P        V  VA G  H+VV    G V  +G+  
Sbjct: 179 LGQLG-----IDDG---MDRHVPVPLTYFNSRPVLAVACGQHHTVVSLTNGGVVAFGK-- 228

Query: 163 PPGDIKQI----------SVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYG 210
              D  Q+          S  +    L+ + +  +A G +H +AL E G+++++G N+YG
Sbjct: 229 --NDHGQLGTGYTLDYHASPSLLAAPLDSLVVPSLACGYYHTIALAEHGSVYSFGRNDYG 286

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G     S+P  ++ L+    V +  G +H+  L++DG+VY +GR  HG+LG G+  
Sbjct: 287 QLGHGHRHHLSEPTLIKALAKTHAVQVTCGCYHTLVLSEDGKVYPFGRNNHGQLGLGNLI 346

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
             +   PQ +  L  + +V+V+ G  HS+ LT
Sbjct: 347 DCTS--PQIIASLRDKFVVKVASGFYHSICLT 376



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 20/168 (11%)

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           +++G N YG+L   DT  R+ P P+     + ++D+A G   +  L + G+V+  G  + 
Sbjct: 14  YSFGQNSYGELCHNDTVDRTLPTPISFCHNVKILDVACGNEQTAFLFETGDVFTCGYNDS 73

Query: 262 GRLGFGDNDK--SSKMVPQKVNLLAGEDIVQV--SCGGTHSVALTRDGHIFSFGRGDHGR 317
           G+ G G   +  S ++VP     L  EDI  +  + G  H  A++R G +++FG    G+
Sbjct: 74  GQCGIGSTSRVQSLRLVPA----LVTEDIAHIRSANGCEHLTAISRSGALYTFGFNSRGQ 129

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           LG+G    +  P+  P  I       D      +   VAC   HT+ +
Sbjct: 130 LGHG----STNPITTPTKIK------DLASYHVVE--VACSYFHTIVM 165


>gi|195449389|ref|XP_002072053.1| GK22640 [Drosophila willistoni]
 gi|194168138|gb|EDW83039.1| GK22640 [Drosophila willistoni]
          Length = 1261

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 116/239 (48%), Gaps = 22/239 (9%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQISVPVRVQGLEQVKL---IAVGAF 190
           V  +A G +HS+VLT+ G V +WG       G      VP  V+  ++  L   IA G  
Sbjct: 78  VSAIACGSSHSLVLTKSGVVMSWGVNDCGQLGQTTNSRVPTMVKVPDKKPLFVQIACGNE 137

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ---PIPVQGLSGLTLVDIAAGGWHSTAL 247
           H+LAL  DG +++WG+N YGQLG  + +  S    P+ +  + G+ +  IA GG H   +
Sbjct: 138 HSLALTNDGTIYSWGSNRYGQLGMSEPENMSNCHFPMHLTSIHGIPIATIACGGNHCFLI 197

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +    VYGWGR   G+LG   ND S +  P ++  L    +  V+CG   SV LT  G +
Sbjct: 198 SKSSAVYGWGRNNRGQLGL--NDLSDRPYPTELTTLRPCGVRYVACGDEFSVFLTHKGAL 255

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           F+ G G HG+LG+G       P +V      P               VAC   +TLA V
Sbjct: 256 FTCGDGTHGQLGHGNLSNALAPFKVMKLRDKP------------VTQVACAKHYTLAFV 302



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 36/299 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVN---------------ALSNTKIVQAAIGG 83
           ++R +  G R +L +   GK        QV+                L + ++   A G 
Sbjct: 26  QLRDIAFGDRYTLFLTAKGKVYECETHGQVHNTRKRSRLSPFRLVAGLQDIEVSAIACGS 85

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
            H L +   G   +WG N+ GQ G+    +  T       + +P +   K +  Q+A G 
Sbjct: 86  SHSLVLTKSGVVMSWGVNDCGQLGQTTNSRVPTM------VKVPDK---KPLFVQIACGN 136

Query: 144 THSVVLTREGHVWTWGQPW-------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLA 194
            HS+ LT +G +++WG           P ++     P+ +  +  + +  IA G  H   
Sbjct: 137 EHSLALTNDGTIYSWGSNRYGQLGMSEPENMSNCHFPMHLTSIHGIPIATIACGGNHCFL 196

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + +  A++ WG N  GQLG  D   R  P  +  L    +  +A G   S  LT  G ++
Sbjct: 197 ISKSSAVYGWGRNNRGQLGLNDLSDRPYPTELTTLRPCGVRYVACGDEFSVFLTHKGALF 256

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGR 312
             G G HG+LG G  + S+ + P KV  L  + + QV+C   +++A     G ++ FG+
Sbjct: 257 TCGDGTHGQLGHG--NLSNALAPFKVMKLRDKPVTQVACAKHYTLAFVPSIGQLYGFGQ 313



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 96/239 (40%), Gaps = 40/239 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +++WG  + GQLG   N     +  V   +P  V+ +  G+ +SLA+ +DG         
Sbjct: 97  VMSWGVNDCGQLGQTTNSRVPTMVKVPDKKPLFVQ-IACGNEHSLALTNDGTIYSWGSNR 155

Query: 59  ------TKTENI-----PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                 ++ EN+     P  + ++    I   A GG HC  +      Y WG N  GQ G
Sbjct: 156 YGQLGMSEPENMSNCHFPMHLTSIHGIPIATIACGGNHCFLISKSSAVYGWGRNNRGQLG 215

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
                 D + R    ++   + C     VR VA G   SV LT +G ++T G        
Sbjct: 216 ----LNDLSDRPYPTELTTLRPCG----VRYVACGDEFSVFLTHKGALFTCGDGTHGQLG 267

Query: 164 PGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQED-GALWAWGNNEYGQLGTGDTQP 219
            G++     P +V  L    V  +A    + LA     G L+      +GQLG   T P
Sbjct: 268 HGNLSNALAPFKVMKLRDKPVTQVACAKHYTLAFVPSIGQLYG-----FGQLGKIYTLP 321



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 22/135 (16%)

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS- 292
           L DIA G  ++  LT  G+VY      HG++   +  K S++ P +  L+AG   ++VS 
Sbjct: 27  LRDIAFGDRYTLFLTAKGKVYECE--THGQVH--NTRKRSRLSPFR--LVAGLQDIEVSA 80

Query: 293 --CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
             CG +HS+ LT+ G + S+G  D G+LG     TT   +   + +P         D++ 
Sbjct: 81  IACGSSHSLVLTKSGVVMSWGVNDCGQLGQ----TTNSRVPTMVKVP---------DKKP 127

Query: 351 IAKLVACGGRHTLAI 365
           +   +ACG  H+LA+
Sbjct: 128 LFVQIACGNEHSLAL 142



 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 21/167 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--------RNSLA 52
           ++ ++++  WG    GQLG+ +  +R +   +  L P  VR V  G         + +L 
Sbjct: 197 ISKSSAVYGWGRNNRGQLGLNDLSDRPYPTELTTLRPCGVRYVACGDEFSVFLTHKGALF 256

Query: 53  ICDD--------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
            C D        G       P +V  L +  + Q A    + LA V   G+ Y +G  + 
Sbjct: 257 TCGDGTHGQLGHGNLSNALAPFKVMKLRDKPVTQVACAKHYTLAFVPSIGQLYGFG--QL 314

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
           G+    P + +  G  +   +         +IV Q+ +GG  SVV T
Sbjct: 315 GKIYTLPGKIN--GPWISPTLTANSAFNDAVIVNQIFSGGLKSVVTT 359


>gi|403353075|gb|EJY76071.1| hypothetical protein OXYTRI_02425 [Oxytricha trifallax]
          Length = 794

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 46/285 (16%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE-PERKDDTGRILRRDIVIPQRCA 131
           N K+ Q A G +H L +   G+ +AWGG  + + GE+  + +++  RI+           
Sbjct: 259 NQKVKQVACGDYHTLCLMQDGQVFAWGGTLHKKVGEKNAQAQNNEPRIVSG-------LQ 311

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWG---QPWPPG-----DIKQISVPVRVQGLEQVK 183
            K IV  +  G  HSV L  +G V++WG     +  G     + + I  P++VQG+   K
Sbjct: 312 GKQIVH-IDCGDFHSVALDIQGRVYSWGGGGASYNKGQCGHGNNEDIEQPIQVQGIAHRK 370

Query: 184 L--IAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQP----IPVQGLSGLTL-- 234
           +  I+ G FH LAL +ED  L+AWG+  YG+ G G+ Q  S+P    +P   +S   +  
Sbjct: 371 IVQISAGGFHTLALCEEDNELYAWGSGTYGECGLGEFQASSKPKIVKMPKDFVSNQEMNQ 430

Query: 235 --------------VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--PQ 278
                           I+AGG H+  LT  G VY +G G HG+LG     +S+K    PQ
Sbjct: 431 MQNEFAFSSQKPLITQISAGGHHTLLLTSRGRVYSFGYGSHGQLGL----RSTKNFCSPQ 486

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
            V  L  ++I  ++ G  HS+ L+  G +F+ G G+HG+LG   K
Sbjct: 487 LVKDLLSKNIKAIAAGWNHSLILSDKGDLFACGYGNHGQLGLNDK 531



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 49/340 (14%)

Query: 60  KTENIPSQVNALSNTKIVQAA----IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           K + +P  + ++ N K+   A     G  H   V   G  Y  G   +G+ G +      
Sbjct: 185 KDQFLPKPI-SIQNLKLSHTAKYISSGSHHSAIVTKAGELYVSGSQLHGKLGIQSVNGMH 243

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQI 170
             +  +  +    +   K  V+QVA G  H++ L ++G V+ WG     +        Q 
Sbjct: 244 VSKFTQVTMFDGIKVNQK--VKQVACGDYHTLCLMQDGQVFAWGGTLHKKVGEKNAQAQN 301

Query: 171 SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWG----NNEYGQLGTGDTQPRSQPI 224
           + P  V GL+  Q+  I  G FH++AL   G +++WG    +   GQ G G+ +   QPI
Sbjct: 302 NEPRIVSGLQGKQIVHIDCGDFHSVALDIQGRVYSWGGGGASYNKGQCGHGNNEDIEQPI 361

Query: 225 PVQGLSGLTLVDIAAGGWHSTAL-TDDGEVYGWGRGEHGRLGFGDNDKSSK--------- 274
            VQG++   +V I+AGG+H+ AL  +D E+Y WG G +G  G G+   SSK         
Sbjct: 362 QVQGIAHRKIVQISAGGFHTLALCEEDNELYAWGSGTYGECGLGEFQASSKPKIVKMPKD 421

Query: 275 -MVPQKVNLLAGED--------IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            +  Q++N +  E         I Q+S GG H++ LT  G ++SFG G HG+LG      
Sbjct: 422 FVSNQEMNQMQNEFAFSSQKPLITQISAGGHHTLLLTSRGRVYSFGYGSHGQLG------ 475

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
               +    N  +P+   D + +    K +A G  H+L +
Sbjct: 476 ----LRSTKNFCSPQLVKDLLSKN--IKAIAAGWNHSLIL 509



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 129/312 (41%), Gaps = 66/312 (21%)

Query: 39  KVRSVVAGSRNSLAICDDGKT-----------------KTENIPSQVNALSNTKIVQAAI 81
           KV+ V  G  ++L +  DG+                     N P  V+ L   +IV    
Sbjct: 261 KVKQVACGDYHTLCLMQDGQVFAWGGTLHKKVGEKNAQAQNNEPRIVSGLQGKQIVHIDC 320

Query: 82  GGWHCLAVDDQGRAYAWGG----NEYGQCG----EEPERKDDTGRILRRDIVIPQRCAPK 133
           G +H +A+D QGR Y+WGG       GQCG    E+ E+      I  R IV        
Sbjct: 321 GDFHSVALDIQGRVYSWGGGGASYNKGQCGHGNNEDIEQPIQVQGIAHRKIV-------- 372

Query: 134 LIVRQVAAGGTHSVVLTRE-GHVWTWGQ-------------PWPPGDIKQISVPVRVQGL 179
               Q++AGG H++ L  E   ++ WG                 P  +K     V  Q +
Sbjct: 373 ----QISAGGFHTLALCEEDNELYAWGSGTYGECGLGEFQASSKPKIVKMPKDFVSNQEM 428

Query: 180 EQVK-------------LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            Q++              I+ G  H L L   G ++++G   +GQLG   T+    P  V
Sbjct: 429 NQMQNEFAFSSQKPLITQISAGGHHTLLLTSRGRVYSFGYGSHGQLGLRSTKNFCSPQLV 488

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L    +  IAAG  HS  L+D G+++  G G HG+LG   NDK  +     V  L G+
Sbjct: 489 KDLLSKNIKAIAAGWNHSLILSDKGDLFACGYGNHGQLGL--NDKEPRTQFTHVANLGGK 546

Query: 287 DIVQVSCGGTHS 298
           +   +  GG HS
Sbjct: 547 NAYNIYAGGNHS 558



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 42/248 (16%)

Query: 148 VLTREGHVWTWGQPWPPGDI-------KQISVPVRVQGLE---QVKLIAVGAFHNLALQE 197
           + T++ ++W++G+    G++       + +  P+ +Q L+     K I+ G+ H+  + +
Sbjct: 161 IKTKKAYIWSFGKN-SDGELGISSQKDQFLPKPISIQNLKLSHTAKYISSGSHHSAIVTK 219

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD----------IAAGGWHSTAL 247
            G L+  G+  +G+LG          + V   + +T+ D          +A G +H+  L
Sbjct: 220 AGELYVSGSQLHGKLGIQSVNG----MHVSKFTQVTMFDGIKVNQKVKQVACGDYHTLCL 275

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG+V+ WG   H ++G   N ++    P+ V+ L G+ IV + CG  HSVAL   G +
Sbjct: 276 MQDGQVFAWGGTLHKKVG-EKNAQAQNNEPRIVSGLQGKQIVHIDCGDFHSVALDIQGRV 334

Query: 308 FSFGRG----DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +S+G G    + G+ G+G      QP++V            G+  R I ++ A GG HTL
Sbjct: 335 YSWGGGGASYNKGQCGHGNNEDIEQPIQV-----------QGIAHRKIVQISA-GGFHTL 382

Query: 364 AIVEWQTE 371
           A+ E   E
Sbjct: 383 ALCEEDNE 390



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 24/206 (11%)

Query: 173 PVRVQGLEQVKLIAVGAFHNLA------LQEDGALWAWGNNEYGQLGTGDTQPR--SQPI 224
           PVR Q +EQ K  +     N++        +   +W++G N  G+LG    + +   +PI
Sbjct: 134 PVRPQQIEQQKPYSESNLENISEIAKEIKTKKAYIWSFGKNSDGELGISSQKDQFLPKPI 193

Query: 225 PVQGLS-GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            +Q L    T   I++G  HS  +T  GE+Y  G   HG+LG    +        +V + 
Sbjct: 194 SIQNLKLSHTAKYISSGSHHSAIVTKAGELYVSGSQLHGKLGIQSVNGMHVSKFTQVTMF 253

Query: 284 AG----EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
            G    + + QV+CG  H++ L +DG +F++G   H ++  G K    Q  E       P
Sbjct: 254 DGIKVNQKVKQVACGDYHTLCLMQDGQVFAWGGTLHKKV--GEKNAQAQNNE-------P 304

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
           R    G+  + I   + CG  H++A+
Sbjct: 305 RIVS-GLQGKQIVH-IDCGDFHSVAL 328



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 92/253 (36%), Gaps = 84/253 (33%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI 64
             + AWGSG  G+ G+G  +      +VK  + +     +   +N  A            
Sbjct: 389 NELYAWGSGTYGECGLGEFQASSKPKIVKMPKDFVSNQEMNQMQNEFAFSSQKPL----- 443

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
                      I Q + GG H L +  +GR Y++G   +GQ G            LR   
Sbjct: 444 -----------ITQISAGGHHTLLLTSRGRVYSFGYGSHGQLG------------LRS-- 478

Query: 125 VIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ 177
                C+P+L+       ++ +AAG  HS++L+ +G ++  G                  
Sbjct: 479 -TKNFCSPQLVKDLLSKNIKAIAAGWNHSLILSDKGDLFACG------------------ 519

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
                                     +GN  +GQLG  D +PR+Q   V  L G    +I
Sbjct: 520 --------------------------YGN--HGQLGLNDKEPRTQFTHVANLGGKNAYNI 551

Query: 238 AAGGWHSTALTDD 250
            AGG HS  + DD
Sbjct: 552 YAGGNHSWVVIDD 564


>gi|224118018|ref|XP_002331537.1| predicted protein [Populus trichocarpa]
 gi|222873761|gb|EEF10892.1| predicted protein [Populus trichocarpa]
          Length = 320

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 143/302 (47%), Gaps = 33/302 (10%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A+GG H  A+   G  + WG   +G  G     ++   R++        RC        +
Sbjct: 34  ALGGVHSAAITSLGHIFTWGYGGFGALGHSVYHRELFPRLVEGSWDGKIRC--------I 85

Query: 140 AAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-------------ISVPVRVQGLE-QVKLI 185
           +  GTH+  +T  G V+TWG+    GD +              +S+P +V+ L   V  +
Sbjct: 86  STSGTHTAAVTESGEVYTWGRE--EGDGRLGLGPGRGPNEGGGLSIPCKVKTLPVPVATV 143

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G F  + L E+G +W WG N   +LG GD     +P P+  L    ++ IA GG+H  
Sbjct: 144 YCGGFFTMVLTEEGQIWNWGANSNYELGRGDKVGGWRPKPIPSLEDARIIQIAGGGYHCL 203

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALTD+G+V  WG G HG+L  G +   S+ +P  ++ LA + ++ ++CGG+ S A+T  G
Sbjct: 204 ALTDEGKVLSWGFGGHGQL--GHSSIQSQKIPAVIDALADQHVIYIACGGSSSAAITDKG 261

Query: 306 HIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            ++ +G     +LG  G       P+EV   +       DG+ +  +   V+ G  H + 
Sbjct: 262 KLYMWGNAKDSQLGIPGLPEVQSCPVEVKFLMED-----DGLGQHSVLS-VSVGASHAMC 315

Query: 365 IV 366
           +V
Sbjct: 316 LV 317



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 134/323 (41%), Gaps = 37/323 (11%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPY--KVRSVVAGSRNSLAICDDGKTKT------ 61
           WG G+ G+LG G+         +  L P+   VRS+  G  +S AI   G   T      
Sbjct: 2   WGKGDGGRLGFGHENP----AFLPTLNPFLDSVRSIALGGVHSAAITSLGHIFTWGYGGF 57

Query: 62  ----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                     E  P  V    + KI   +  G H  AV + G  Y W G E G       
Sbjct: 58  GALGHSVYHRELFPRLVEGSWDGKIRCISTSGTHTAAVTESGEVYTW-GREEGDGRLGLG 116

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDI 167
                       I    +  P + V  V  GG  ++VLT EG +W WG         GD 
Sbjct: 117 PGRGPNEGGGLSIPCKVKTLP-VPVATVYCGGFFTMVLTEEGQIWNWGANSNYELGRGDK 175

Query: 168 KQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                P  +  LE  ++I +  G +H LAL ++G + +WG   +GQLG    Q +  P  
Sbjct: 176 VGGWRPKPIPSLEDARIIQIAGGGYHCLALTDEGKVLSWGFGGHGQLGHSSIQSQKIPAV 235

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           +  L+   ++ IA GG  S A+TD G++Y WG  +  +LG        +  P +V  L  
Sbjct: 236 IDALADQHVIYIACGGSSSAAITDKGKLYMWGNAKDSQLGI-PGLPEVQSCPVEVKFLME 294

Query: 286 ED------IVQVSCGGTHSVALT 302
           +D      ++ VS G +H++ L 
Sbjct: 295 DDGLGQHSVLSVSVGASHAMCLV 317



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 50/256 (19%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRVQGL--EQVKLI 185
           VR +A GG HS  +T  GH++TWG     G    +          P  V+G    +++ I
Sbjct: 30  VRSIALGGVHSAAITSLGHIFTWGY----GGFGALGHSVYHRELFPRLVEGSWDGKIRCI 85

Query: 186 AVGAFHNLALQEDGALWAWGNNE-----------YGQLGTGDTQP---RSQPIPVQGLSG 231
           +    H  A+ E G ++ WG  E               G G + P   ++ P+PV     
Sbjct: 86  STSGTHTAAVTESGEVYTWGREEGDGRLGLGPGRGPNEGGGLSIPCKVKTLPVPV----- 140

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
                +  GG+ +  LT++G+++ WG   +  LG G  DK     P+ +  L    I+Q+
Sbjct: 141 ---ATVYCGGFFTMVLTEEGQIWNWGANSNYELGRG--DKVGGWRPKPIPSLEDARIIQI 195

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           + GG H +ALT +G + S+G G HG+LG+    ++ Q  ++P  I A        D+  I
Sbjct: 196 AGGGYHCLALTDEGKVLSWGFGGHGQLGH----SSIQSQKIPAVIDAL------ADQHVI 245

Query: 352 AKLVACGGRHTLAIVE 367
              +ACGG  + AI +
Sbjct: 246 --YIACGGSSSAAITD 259



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 18/201 (8%)

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +P     L+ V+ IA+G  H+ A+   G ++ WG   +G LG         P  V+G   
Sbjct: 20  LPTLNPFLDSVRSIALGGVHSAAITSLGHIFTWGYGGFGALGHSVYHRELFPRLVEGSWD 79

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGE-----HGRLGFGDNDKSSKMVPQKVNLLAGE 286
             +  I+  G H+ A+T+ GEVY WGR E         G G N+     +P KV  L   
Sbjct: 80  GKIRCISTSGTHTAAVTESGEVYTWGREEGDGRLGLGPGRGPNEGGGLSIPCKVKTLP-V 138

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            +  V CGG  ++ LT +G I+++G   +  LG G KV   +P  +P             
Sbjct: 139 PVATVYCGGFFTMVLTEEGQIWNWGANSNYELGRGDKVGGWRPKPIP----------SLE 188

Query: 347 DRRWIAKLVACGGRHTLAIVE 367
           D R I   +A GG H LA+ +
Sbjct: 189 DARIIQ--IAGGGYHCLALTD 207



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG+G+ GRLGFG  + +   +P     L  + +  ++ GG HS A+T  GHIF++G G  
Sbjct: 2   WGKGDGGRLGFGHENPA--FLPTLNPFL--DSVRSIALGGVHSAAITSLGHIFTWGYGGF 57

Query: 316 GRLGY 320
           G LG+
Sbjct: 58  GALGH 62


>gi|456861134|gb|EMF79839.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           weilii serovar Topaz str. LT2116]
          Length = 506

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 149/349 (42%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R    +       
Sbjct: 193 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRT--AGNRQPPTL------- 233

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
              IP   +A      V  A G  H L +   G   A+G N  GQ G      +     +
Sbjct: 234 ---IPGIDDA------VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANNLNADSFSM 284

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 285 NPVAVVGLRD-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   PIP Q L+
Sbjct: 339 TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGGNGSPNPTPIPTQVLN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            L    + AGG  S ++   GEV GWG  G    L  G+ +      P K  ++  +D++
Sbjct: 399 ILNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTQKVYEPNKA-VVGIDDVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+  L  +G I+ +G    G LG    +   G P  V I +P
Sbjct: 458 HFGCGATHNFVLLGNGEIYGWGWNFKGSLGRQDLQANWGAPNPVSITLP 506



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 130/289 (44%), Gaps = 39/289 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+   + GG H   + + G  Y  G N +GQ G      D+       D+++
Sbjct: 122 EVNFYFGTKL---SAGGAHSGFLKN-GEVYTTGRNNFGQLGTGNSTGDE-----NNDVIV 172

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                  +    +     +S+ + + G V+TWG               P  P        
Sbjct: 173 KLNSIRNIF--SIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQP 230

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-----QPIPVQ 227
           P  + G++   + A G  H L L+ DG + A+G N  GQLG G     +      P+ V 
Sbjct: 231 PTLIPGIDDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANNLNADSFSMNPVAVV 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAG 285
           GL    ++ + AG  HS ALT++GEVY WGR ++G LG G      +++  P KV  L+G
Sbjct: 291 GLR--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQSTPVKVEGLSG 348

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             I Q++ G  H +AL  DG I+S+G    G+LG G     G P   PI
Sbjct: 349 --IKQIANGRDHILALASDGKIYSWGLNASGQLGIGGN---GSPNPTPI 392



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
           R  + D  I Q+        +++AGG HS  L + G V+T G+     +  Q+       
Sbjct: 110 RFKKPDGTILQKEVNFYFGTKLSAGGAHSGFL-KNGEVYTTGR----NNFGQLGTGNSTG 164

Query: 171 ----SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP----- 219
                V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P     
Sbjct: 165 DENNDVIVKLNSIRNIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRT 224

Query: 220 ---RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSS 273
              R  P  + G+    +   A G  H+  L  DG V  +G+   G+LG G N+    S 
Sbjct: 225 AGNRQPPTLIPGIDDAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGANNLNADSF 282

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            M P  V ++   D++QV  G  HS ALT +G ++ +GR  +G LG GR          P
Sbjct: 283 SMNP--VAVVGLRDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQSTP 340

Query: 334 INI 336
           + +
Sbjct: 341 VKV 343


>gi|408681155|ref|YP_006880982.1| hypothetical protein SVEN_5437 [Streptomyces venezuelae ATCC 10712]
 gi|328885484|emb|CCA58723.1| hypothetical protein SVEN_5437 [Streptomyces venezuelae ATCC 10712]
          Length = 386

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 158/370 (42%), Gaps = 49/370 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRN---SLAIC--------- 54
           + AWG    GQLG G    ++    V+ L    VR + AG  +   S A+          
Sbjct: 33  VRAWGGNGAGQLGNGTTLAQQTPAGVRGLNRADVRHLAAGGDSDTRSFAVALLNDGTVQS 92

Query: 55  ---------DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                     DG T   + P+ V  LS      A +   + +     GR  AWG N YGQ
Sbjct: 93  WGGNAAGQLGDGSTVGRSFPAAVTGLSGVSKTAAGVNSAYAV---RGGRVLAWGDNTYGQ 149

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLI--VRQVAAGGTHSVVLTREGHVWTWGQ--- 160
            G                   P+  A + +  V  +AAG  H++ L  +G VWTWG+   
Sbjct: 150 LGNGTAGAS------------PRPVAVQSLNKVEDIAAGCFHAIALREDGTVWTWGRNHY 197

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G     + P RV  L  V  ++ G  H+LA   DG + AWG N  GQLG G T  
Sbjct: 198 GQLGLGTTTDRNTPQRVPDLTDVVEVSAGCHHSLARTADGTVKAWGYNASGQLGNGSTAH 257

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S P+ V  L+ ++   I A G+HS A+ DDG++  WG    G LG  D    S+  P  
Sbjct: 258 ASAPVDVAHLADVS--RIFAAGYHSFAVLDDGQLRAWGWNSAGHLG--DGSTVSRTTPVP 313

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME-VPINIPA 338
           V  L   D+  ++ G  H+VA+  DG + ++G    G+LG G    +  P+  +P    A
Sbjct: 314 VPGL--TDVTALAGGYNHTVAVLADGSVLAWGENTLGQLGDGTTTNSSTPVTALPPGSGA 371

Query: 339 PRNAGDGVDR 348
            R A   V R
Sbjct: 372 TRVAVSTVSR 381



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 128/289 (44%), Gaps = 33/289 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALE-----------PYKVRS--VVAGSRNSLA 52
           ++ +WG    GQLG G+   R +   V  L             Y VR   V+A   N+  
Sbjct: 89  TVQSWGGNAAGQLGDGSTVGRSFPAAVTGLSGVSKTAAGVNSAYAVRGGRVLAWGDNTYG 148

Query: 53  ICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              +G       P  V +L+  K+   A G +H +A+ + G  + WG N YGQ G     
Sbjct: 149 QLGNGTAGASPRPVAVQSLN--KVEDIAAGCFHAIALREDGTVWTWGRNHYGQLGLGTTT 206

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK 168
             +T          PQR      V +V+AG  HS+  T +G V  WG         G   
Sbjct: 207 DRNT----------PQRVPDLTDVVEVSAGCHHSLARTADGTVKAWGYNASGQLGNGSTA 256

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
             S PV V  L  V  I    +H+ A+ +DG L AWG N  G LG G T  R+ P+PV G
Sbjct: 257 HASAPVDVAHLADVSRIFAAGYHSFAVLDDGQLRAWGWNSAGHLGDGSTVSRTTPVPVPG 316

Query: 229 LSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           L+ +T +   AGG+ H+ A+  DG V  WG    G+LG G    SS  V
Sbjct: 317 LTDVTAL---AGGYNHTVAVLADGSVLAWGENTLGQLGDGTTTNSSTPV 362


>gi|260791114|ref|XP_002590585.1| hypothetical protein BRAFLDRAFT_123620 [Branchiostoma floridae]
 gi|229275780|gb|EEN46596.1| hypothetical protein BRAFLDRAFT_123620 [Branchiostoma floridae]
          Length = 710

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 150/328 (45%), Gaps = 39/328 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           AI   GK+K  ENI S+   + N +I   A G  H   V + GR Y +G N++GQ G   
Sbjct: 13  AIFTFGKSKFAENISSKF-WIRNDRICAVACGDEHTALVTENGRLYTFGSNDWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWG-----QPW 162
                   +          C   L     + VA G +H+++ T +G V+ WG     Q  
Sbjct: 69  --------LGHTKTASKPSCVKSLKHEKAKLVACGRSHTLIATGDGKVYVWGGGSEGQLG 120

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              D  + + P  +    +   ++ G +H   + EDG L+ +G  EYG+LG  ++   S 
Sbjct: 121 LGEDTTECTEPTLLDFDSKAISVSCGYYHTAVVTEDGNLYTFGETEYGKLGLNNSDLDSS 180

Query: 223 PIPVQGLSGLT--LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P Q ++G+   +  +  GG H+TA+ + G VY +G G  G+LG G N       P +V
Sbjct: 181 DTP-QKVTGIKEKVKFVVCGGGHTTAIAESGAVYTFGNGASGQLGHG-NSLLESPTPHRV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ--PMEVPINIPA 338
                 D    SCG   +  +T  GH+++FG G HG+LG G +  T Q  P +V     A
Sbjct: 239 ERFRDADCKHASCGENFTAVITGKGHLYTFGDGRHGKLGLGDESFTNQFRPFKV-----A 293

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIV 366
             N       ++  + VACGG H + I 
Sbjct: 294 RFN-------KFQVQWVACGGCHMMVIA 314



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 18/190 (9%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           +++  +A G  H   + E+G L+ +G+N++GQLG G T+  S+P  V+ L       +A 
Sbjct: 35  DRICAVACGDEHTALVTENGRLYTFGSNDWGQLGLGHTKTASKPSCVKSLKHEKAKLVAC 94

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           G  H+   T DG+VY WG G  G+LG G+ D +    P  ++  +    + VSCG  H+ 
Sbjct: 95  GRSHTLIATGDGKVYVWGGGSEGQLGLGE-DTTECTEPTLLDFDS--KAISVSCGYYHTA 151

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRK--VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
            +T DG++++FG  ++G+LG       ++  P +V            G+  +   K V C
Sbjct: 152 VVTEDGNLYTFGETEYGKLGLNNSDLDSSDTPQKVT-----------GIKEK--VKFVVC 198

Query: 358 GGRHTLAIVE 367
           GG HT AI E
Sbjct: 199 GGGHTTAIAE 208



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 37/264 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS + GQLG+G+ +       VK+L+  K + V  G  ++L    DGK        
Sbjct: 56  LYTFGSNDWGQLGLGHTKTASKPSCVKSLKHEKAKLVACGRSHTLIATGDGKVYVWGGGS 115

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P+ ++   ++K +  + G +H   V + G  Y +G  EYG+ G  
Sbjct: 116 EGQLGLGEDTTECTEPTLLDF--DSKAISVSCGYYHTAVVTEDGNLYTFGETEYGKLGLN 173

Query: 110 PERKDDTGRILRRDIVIPQRCA-PKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWP 163
               D +          PQ+    K  V+ V  GG H+  +   G V+T+     GQ   
Sbjct: 174 NSDLDSSD--------TPQKVTGIKEKVKFVVCGGGHTTAIAESGAVYTFGNGASGQLGH 225

Query: 164 PGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              + +   P RV+       K  + G      +   G L+ +G+  +G+LG GD    +
Sbjct: 226 GNSLLESPTPHRVERFRDADCKHASCGENFTAVITGKGHLYTFGDGRHGKLGLGDESFTN 285

Query: 222 Q--PIPVQGLSGLTLVDIAAGGWH 243
           Q  P  V   +   +  +A GG H
Sbjct: 286 QFRPFKVARFNKFQVQWVACGGCH 309


>gi|118396198|ref|XP_001030441.1| Regulator of chromosome condensation (RCC1) [Tetrahymena thermophila]
 gi|89284744|gb|EAR82778.1| Regulator of chromosome condensation (RCC1) [Tetrahymena thermophila
            SB210]
          Length = 1984

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/263 (33%), Positives = 130/263 (49%), Gaps = 19/263 (7%)

Query: 90   DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI--PQRCAP--KLIVRQVAAGGTH 145
            D  G  ++WG N  GQ G   + K +   +L + I +  P+   P    IV  VA G  H
Sbjct: 1497 DAVGVMFSWGQNTEGQMGNVYDPKQN---LLSKKIKVNFPKLIVPLKDTIVTSVACGYQH 1553

Query: 146  SVVLTREGHVWTWGQPWPP----GDIKQISVP--VRVQGLEQVKLIAVGAFHNLALQEDG 199
            SV +T  G V  WG         G+    SVP    +  L  ++ ++ G+ H LAL   G
Sbjct: 1554 SVAITYAGTVLAWGDNSHSQLGLGEKSPSSVPFPTPIPALTNIQSVSCGSEHTLALDYIG 1613

Query: 200  ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
             +++WGN E G LG G+      P  ++ L GL +  I  GG HS  LT + +VY WGR 
Sbjct: 1614 QVFSWGNGEGGLLGHGNEDVCPSPKIIEALKGLNVDFIVCGGLHSLVLTKNRQVYSWGRN 1673

Query: 260  EHGRLGFGD----NDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            E G+LG       N+K     P++V   L G  ++Q++ G  HS+AL  +G ++ +G   
Sbjct: 1674 EGGQLGIDKKLFTNEKCYLTTPKRVKGNLEGVGVIQIAAGEAHSLALALNGQVYGWGYNM 1733

Query: 315  HGRLGYGRKVTTGQPMEVPINIP 337
            +G++G G +  T  P+  P  IP
Sbjct: 1734 NGQIGLGMQTDT-YPVYEPQLIP 1755



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 111/411 (27%), Positives = 178/411 (43%), Gaps = 74/411 (18%)

Query: 7    IIAWGSGEDGQLGIGNNEEREW------VCVVKALEPYK---VRSVVAGSRNSLAICDDG 57
            + +WG   +GQ+G   + ++        V   K + P K   V SV  G ++S+AI   G
Sbjct: 1502 MFSWGQNTEGQMGNVYDPKQNLLSKKIKVNFPKLIVPLKDTIVTSVACGYQHSVAITYAG 1561

Query: 58   KT------------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
                                 +   P+ + AL+N + V  + G  H LA+D  G+ ++WG
Sbjct: 1562 TVLAWGDNSHSQLGLGEKSPSSVPFPTPIPALTNIQSV--SCGSEHTLALDYIGQVFSWG 1619

Query: 100  GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
              E G  G   E    + +I+             L V  +  GG HS+VLT+   V++WG
Sbjct: 1620 NGEGGLLGHGNEDVCPSPKII--------EALKGLNVDFIVCGGLHSLVLTKNRQVYSWG 1671

Query: 160  --QPWPPGDIKQ--------ISVPVRVQG-LEQVKL--IAVGAFHNLALQEDGALWAWGN 206
              +    G  K+        ++ P RV+G LE V +  IA G  H+LAL  +G ++ WG 
Sbjct: 1672 RNEGGQLGIDKKLFTNEKCYLTTPKRVKGNLEGVGVIQIAAGEAHSLALALNGQVYGWGY 1731

Query: 207  NEYGQLGTG---DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
            N  GQ+G G   DT P  +P  +  L+ +  +    G   S  L  + E        +  
Sbjct: 1732 NMNGQIGLGMQTDTYPVYEPQLIPKLNKIEKI-FCCGLNDSNQLGLEKEPIKITSTTNNI 1790

Query: 264  LG-FGDNDKSSKM----VPQKVNLLAGEDIVQVSCGGTHSVAL----TRDGHIFSFGRGD 314
            L  +   D+   +    +P+K++      ++ VSCG  HS+AL    T+   +F++G   
Sbjct: 1791 LDQYKPQDQKRAVTDVFIPKKMDCFHQIPVLHVSCGHNHSLALVVADTKHYMLFAWGMHK 1850

Query: 315  HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            HG+LG G    TGQ   VP  I   ++             +ACG  H+L +
Sbjct: 1851 HGQLGIGE---TGQNSSVPRPITYLQDV--------TTYSMACGSYHSLVV 1890



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 140/340 (41%), Gaps = 62/340 (18%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            N P  +  L +T +   A G  H +A+   G   AWG N + Q G         G     
Sbjct: 1531 NFPKLIVPLKDTIVTSVACGYQHSVAITYAGTVLAWGDNSHSQLG--------LGEKSPS 1582

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQG 178
             +  P        ++ V+ G  H++ L   G V++WG         G+      P  ++ 
Sbjct: 1583 SVPFPTPIPALTNIQSVSCGSEHTLALDYIGQVFSWGNGEGGLLGHGNEDVCPSPKIIEA 1642

Query: 179  LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG------TGDTQPRSQPIPVQG-L 229
            L+   V  I  G  H+L L ++  +++WG NE GQLG      T +    + P  V+G L
Sbjct: 1643 LKGLNVDFIVCGGLHSLVLTKNRQVYSWGRNEGGQLGIDKKLFTNEKCYLTTPKRVKGNL 1702

Query: 230  SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG-DNDKSSKMVPQKVNLLAGEDI 288
             G+ ++ IAAG  HS AL  +G+VYGWG   +G++G G   D      PQ +        
Sbjct: 1703 EGVGVIQIAAGEAHSLALALNGQVYGWGYNMNGQIGLGMQTDTYPVYEPQLIP------- 1755

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP------INIPAPRNA 342
                        L +   IF  G  D  +LG  +     +P+++       ++   P++ 
Sbjct: 1756 -----------KLNKIEKIFCCGLNDSNQLGLEK-----EPIKITSTTNNILDQYKPQDQ 1799

Query: 343  GDGVDRRWIAKL-----------VACGGRHTLAIVEWQTE 371
               V   +I K            V+CG  H+LA+V   T+
Sbjct: 1800 KRAVTDVFIPKKMDCFHQIPVLHVSCGHNHSLALVVADTK 1839



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 124/287 (43%), Gaps = 51/287 (17%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----------- 55
            + +WG+GE G LG GN +      +++AL+   V  +V G  +SL +             
Sbjct: 1615 VFSWGNGEGGLLGHGNEDVCPSPKIIEALKGLNVDFIVCGGLHSLVLTKNRQVYSWGRNE 1674

Query: 56   ------DGKTKTE-----NIPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                  D K  T        P +V   L    ++Q A G  H LA+   G+ Y WG N  
Sbjct: 1675 GGQLGIDKKLFTNEKCYLTTPKRVKGNLEGVGVIQIAAGEAHSLALALNGQVYGWGYNMN 1734

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKL-IVRQVAAGG---THSVVLTREGHVWTWG 159
            GQ G     + DT  +    ++      PKL  + ++   G   ++ + L +E    T  
Sbjct: 1735 GQIGLG--MQTDTYPVYEPQLI------PKLNKIEKIFCCGLNDSNQLGLEKEPIKITST 1786

Query: 160  -----QPWPPGDIKQ----ISVPVRVQGLEQVKLIAVGAFHNLAL------QEDGALWAW 204
                   + P D K+    + +P ++    Q+ ++ V   HN +L       +   L+AW
Sbjct: 1787 TNNILDQYKPQDQKRAVTDVFIPKKMDCFHQIPVLHVSCGHNHSLALVVADTKHYMLFAW 1846

Query: 205  GNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
            G +++GQLG G+T Q  S P P+  L  +T   +A G +HS  + +D
Sbjct: 1847 GMHKHGQLGIGETGQNSSVPRPITYLQDVTTYSMACGSYHSLVVAND 1893



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 19/122 (15%)

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKMVPQ-KVNL------LAGEDIVQVSCGGTHSVALTR 303
            G ++ WG+   G++G   + K + +  + KVN       L    +  V+CG  HSVA+T 
Sbjct: 1500 GVMFSWGQNTEGQMGNVYDPKQNLLSKKIKVNFPKLIVPLKDTIVTSVACGYQHSVAITY 1559

Query: 304  DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
             G + ++G   H +LG G K  +  P   PI  PA  N           + V+CG  HTL
Sbjct: 1560 AGTVLAWGDNSHSQLGLGEKSPSSVPFPTPI--PALTNI----------QSVSCGSEHTL 1607

Query: 364  AI 365
            A+
Sbjct: 1608 AL 1609


>gi|326926479|ref|XP_003209427.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Meleagris
            gallopavo]
          Length = 4334

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3473 YLWGAGRHGQLAEAG-----------RNVMVPVAAPSFSQAQQVVCGQNCTFVIQANGTV 3521

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 3522 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 3581

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 3582 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGL 3641

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H+VA++ DG  +++FG GD+G+LG G    
Sbjct: 3642 GNT--SNKKLPERVTALEGYQIGQVACGLNHTVAVSMDGSMVWAFGDGDYGKLGLGNSTA 3699

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V I        G G+      K VACG + ++A+ +
Sbjct: 3700 KSSPQKVDI------LCGIGI------KKVACGTQFSVALTK 3729



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGVSIQQI----SAGTSHSLA 732



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 3520 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 3554

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 3555 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 3606

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 3607 EEVV-----------QMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 3655

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H +A+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 3656 LEGYQIGQVACGLNHTVAVSMDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCGIGIK 3715

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V +L+G  I  ++ G 
Sbjct: 3716 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLSGVFIEDIAVGA 3773

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL+  G ++++G    G+LG G      +P  + +
Sbjct: 3774 EHTLALSSTGDVYAWGSNSEGQLGLGHTNHVREPTLITV 3812



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 155/312 (49%), Gaps = 30/312 (9%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            N+   V A S ++  Q   G      +   G   A G   YG+ G+     DD       
Sbjct: 3489 NVMVPVAAPSFSQAQQVVCGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 3541

Query: 123  DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             + +       ++ + V + G+  HS+ LT  G V++WG         G+  +   P ++
Sbjct: 3542 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQI 3601

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +
Sbjct: 3602 EALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQI 3661

Query: 235  VDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+C
Sbjct: 3662 GQVACGLNHTVAVSMDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDILCGIGIKKVAC 3719

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   SVALT+DGH+++FG+     L  GR     +P +VP+          GV      +
Sbjct: 3720 GTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQVPVL--------SGV----FIE 3767

Query: 354  LVACGGRHTLAI 365
             +A G  HTLA+
Sbjct: 3768 DIAVGAEHTLAL 3779



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+++  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGVSIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 3568 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 3627

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H +AV  D    +A+G  
Sbjct: 3628 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTVAVSMDGSMVWAFGDG 3687

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + DI+    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 3688 DYGKLGLGNSTAKSSPQ--KVDIL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 3739

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  IAVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 3740 RLIGLPEGRARNHNRPQQVPVLSGVFIEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGLG 3799

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  +  L G  +  I+AG  HS A T
Sbjct: 3800 HTNHVREPTLITVLQGKNIRQISAGRCHSAAWT 3832



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGVSIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|326432295|gb|EGD77865.1| ITCH protein [Salpingoeca sp. ATCC 50818]
          Length = 1207

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 155/320 (48%), Gaps = 28/320 (8%)

Query: 6   SIIAWGSGEDGQLGIGNNEE--REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-- 61
           S+  WG+   GQLGIG+ +   +  V +V +LE  ++  V  G  +SLAI   G   T  
Sbjct: 2   SVAVWGATGAGQLGIGDADGTGKTRVTLVPSLE-QELAFVATGYYHSLAITRSGTVYTTG 60

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       E+  ++V  L     V  A+G    + VD  G+ Y WGG E GQ G  
Sbjct: 61  KNDRRQLGRSGDEHKWARVTPLETITAVAGAVGLDFSVVVDSTGKVYTWGGGERGQLGLG 120

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDI 167
            E  +   R+ R     P +      V  VA G  H + LTR+G V++WG+      GD 
Sbjct: 121 REAMETGSRVPR-----PVKGLGNAFVISVACGTRHCLALTRDGRVFSWGEGADGQLGDG 175

Query: 168 KQIS--VPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           + +S   P  +  L  + V  +A G+ ++LA+     ++A+G+N  GQLG GDT  R +P
Sbjct: 176 QFVSRHSPEVIADLRGKGVVSVAAGSTYSLAVTGADQVYAFGSNSKGQLGVGDTTARFRP 235

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V+ L G  +  + AG +H+ A T  G +Y WG  + G+LG G    S     +  ++L
Sbjct: 236 TLVRFLDGKQVCHVTAGDFHTLARTRTGHLYAWGSNQWGQLGLGSEADSVAAPTEITHIL 295

Query: 284 AGEDIVQVSCGGTHSVALTR 303
               +++VS G  H+VAL R
Sbjct: 296 EIGRVLEVSAGRRHTVALIR 315



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 144/332 (43%), Gaps = 77/332 (23%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           ST  +  WG GE GQLG+G           +A+E         GSR              
Sbjct: 102 STGKVYTWGGGERGQLGLGR----------EAME--------TGSR-------------- 129

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +P  V  L N  ++  A G  HCLA+   GR ++WG    GQ G+        G+ + R
Sbjct: 130 -VPRPVKGLGNAFVISVACGTRHCLALTRDGRVFSWGEGADGQLGD--------GQFVSR 180

Query: 123 DIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
                   +P++I       V  VAAG T+S+ +T    V+ +G         GD     
Sbjct: 181 H-------SPEVIADLRGKGVVSVAAGSTYSLAVTGADQVYAFGSNSKGQLGVGDTTARF 233

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            P  V+ L+  QV  +  G FH LA    G L+AWG+N++GQLG G ++  S   P +  
Sbjct: 234 RPTLVRFLDGKQVCHVTAGDFHTLARTRTGHLYAWGSNQWGQLGLG-SEADSVAAPTEIT 292

Query: 230 SGLTL---VDIAAGGWHSTAL----TDDGE----VYGWGRGEHGRLGFGDNDKSSKMV-- 276
             L +   ++++AG  H+ AL    T+ G        +G    G+LG   +  +SK    
Sbjct: 293 HILEIGRVLEVSAGRRHTVALIRTVTETGAQATVAVAFGANNTGQLGLDPDHPASKRTQL 352

Query: 277 --PQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
             P ++  ++    +++  GG H++ +  + H
Sbjct: 353 FHPVRLKRISSMHPIKLIAGGNHTIMIFGEQH 384



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 6/157 (3%)

Query: 176 VQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLG-TGDTQPRSQPIPVQGLSGLT 233
           V  LEQ +  +A G +H+LA+   G ++  G N+  QLG +GD    ++  P   L  +T
Sbjct: 30  VPSLEQELAFVATGYYHSLAITRSGTVYTTGKNDRRQLGRSGDEHKWARVTP---LETIT 86

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG-DNDKSSKMVPQKVNLLAGEDIVQVS 292
            V  A G   S  +   G+VY WG GE G+LG G +  ++   VP+ V  L    ++ V+
Sbjct: 87  AVAGAVGLDFSVVVDSTGKVYTWGGGERGQLGLGREAMETGSRVPRPVKGLGNAFVISVA 146

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           CG  H +ALTRDG +FS+G G  G+LG G+ V+   P
Sbjct: 147 CGTRHCLALTRDGRVFSWGEGADGQLGDGQFVSRHSP 183


>gi|320169612|gb|EFW46511.1| Rcc1 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 481

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 187/412 (45%), Gaps = 62/412 (15%)

Query: 6   SIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAI----------C 54
           S+   G G+ GQLG+G     R+    ++++E   +  + AG  +++AI          C
Sbjct: 67  SVFTVGEGDAGQLGLGEEITSRKKPTPLRSIENVPIVRMAAGGVHTVAITAKGQVYSWGC 126

Query: 55  DD----GKTKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQCG 107
           +D    G++  E  P+ V  L  N  IV    G  H   + D+G  Y WG   +  G+ G
Sbjct: 127 NDEGALGRSGEEAEPALVKGLIENEFIVAVTCGDSHTNVLSDKGVVYGWGTYRDSAGRMG 186

Query: 108 EE-----PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            +      E   D   +     V+    A    V +++A   H++ LT +G++ TWG   
Sbjct: 187 FDFDTLFKEGGADKATVQFEPKVVLDYTAKHDRVVRISASNNHTIALTEKGNIVTWGC-- 244

Query: 163 PPGDIKQI------------------SVPVRVQGLEQV-KLIAVGAFHNLALQEDGALWA 203
             G+  Q+                    PV ++  +   K +  G F +  L +D  + A
Sbjct: 245 --GEHGQLGRVGSRMSDRSKHLHMLGPAPVLIRRKKAAPKDVFTGGFQSFVLFDDDTVVA 302

Query: 204 WGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           +G N Y Q G  D   P   P  V  LSG  +V I  G  H+ AL  DG V  +GRG++G
Sbjct: 303 FGLNNYYQCGIPDVADPIYAPTEVPALSGRQVVSIKGGEHHTLALLADGSVLSFGRGDYG 362

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGED---IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           RLG G+N++ S+  P K++ L   D   I +++ GG  S AL+  G ++++G G + +L 
Sbjct: 363 RLGHGNNNELSQ--PVKIDSLGPSDQVHIDKIATGGIVSYALSNHGEVYAWGMGSNYQLA 420

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
            G        M+ P  +PAPR   + V        V  GG+HT+ +V ++ +
Sbjct: 421 LGPD----DDMDTPTLVPAPRFGDNSVLD------VVSGGQHTVFLVNYKNK 462



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 151/334 (45%), Gaps = 48/334 (14%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDD 91
           + AL    V +V  G    L + ++  ++ +  P+ + ++ N  IV+ A GG H +A+  
Sbjct: 60  IAALPAGSVFTVGEGDAGQLGLGEEITSRKK--PTPLRSIENVPIVRMAAGGVHTVAITA 117

Query: 92  QGRAYAWGGNE---YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           +G+ Y+WG N+    G+ GEE E     G I    IV             V  G +H+ V
Sbjct: 118 KGQVYSWGCNDEGALGRSGEEAEPALVKGLIENEFIV------------AVTCGDSHTNV 165

Query: 149 LTREGHVWTWGQP--------------WPPGDIKQISVPVRVQGL-------EQVKLIAV 187
           L+ +G V+ WG                +  G   + +V    + +       ++V  I+ 
Sbjct: 166 LSDKGVVYGWGTYRDSAGRMGFDFDTLFKEGGADKATVQFEPKVVLDYTAKHDRVVRISA 225

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGT--GDTQPRSQPIPVQGLSGLTL-------VDIA 238
              H +AL E G +  WG  E+GQLG        RS+ + + G + + +        D+ 
Sbjct: 226 SNNHTIALTEKGNIVTWGCGEHGQLGRVGSRMSDRSKHLHMLGPAPVLIRRKKAAPKDVF 285

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG+ S  L DD  V  +G   + + G  D        P +V  L+G  +V +  G  H+
Sbjct: 286 TGGFQSFVLFDDDTVVAFGLNNYYQCGIPDV-ADPIYAPTEVPALSGRQVVSIKGGEHHT 344

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +AL  DG + SFGRGD+GRLG+G      QP+++
Sbjct: 345 LALLADGSVLSFGRGDYGRLGHGNNNELSQPVKI 378


>gi|308535275|ref|YP_002138732.2| hypothetical protein [Geobacter bemidjiensis Bem]
 gi|308052620|gb|ACH38936.2| LOW QUALITY PROTEIN: ATS1 domain repeat protein [Geobacter
            bemidjiensis Bem]
          Length = 1917

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 159/356 (44%), Gaps = 47/356 (13%)

Query: 9    AWGSGEDGQLGIGNNEER----------EWVCVVKALEPYKVRSVVAGS-----RNSLAI 53
            +WG    GQLG G    R          +W+ +   ++ + +     G+     RN L  
Sbjct: 1117 SWGYNAFGQLGDGTTVNRYVPVQIGDDNKWISISAGVD-FTLALKSDGTLWGWGRNDLGQ 1175

Query: 54   CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
              DG T     P Q+   ++T  +    GG+H  A+   G  +AWGGN  GQ G      
Sbjct: 1176 LGDGTTTFRYSPVQIG--NSTDWISIHAGGYHAAALKSDGTLWAWGGNYNGQVGN----- 1228

Query: 114  DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDI 167
               G  L +  + P +         ++AGG H++ L   G +W WG           G +
Sbjct: 1229 ---GSTLNQ--LFPLQIGTDRSWTAISAGGAHTLALKANGTLWGWGSNSSGQVGLGYGSL 1283

Query: 168  KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ---PI 224
             Q + P R+      KLI+ G +H++ALQ D  LW WG+N+YGQLG G T    Q   P+
Sbjct: 1284 AQYTSPTRIGTAGNWKLISAGTYHSMALQTDNTLWGWGSNQYGQLGNGTTSSYGQLSFPV 1343

Query: 225  PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
             +  +S  + V  A G  H+ AL  +G ++ WGR   G L  GD     K+ P ++   A
Sbjct: 1344 KIGSVSNWSSVSAAYG--HTVALDLNGALWAWGRNSSGEL--GDATSVDKVYPVRIGTNA 1399

Query: 285  GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG----RKVTTGQPMEVPINI 336
                ++   G +++VA   DG ++++G   +G LG G    R   T     VP +I
Sbjct: 1400 TWTTME--TGDSYTVASKSDGTLWAWGNNWYGGLGDGTASERDGATTATKYVPTHI 1453



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 27/276 (9%)

Query: 74   TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
            T   + + G  H +A+   G  ++WG N +GQ G+        G  + R + +      K
Sbjct: 1094 TVFSKVSAGTRHTIALKSDGTLWSWGYNAFGQLGD--------GTTVNRYVPVQIGDDNK 1145

Query: 134  LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRVQGLEQVKLI 185
             I   ++AG   ++ L  +G +W WG+     D+ Q+          PV++        I
Sbjct: 1146 WI--SISAGVDFTLALKSDGTLWGWGR----NDLGQLGDGTTTFRYSPVQIGNSTDWISI 1199

Query: 186  AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
              G +H  AL+ DG LWAWG N  GQ+G G T   +Q  P+Q  +  +   I+AGG H+ 
Sbjct: 1200 HAGGYHAAALKSDGTLWAWGGNYNGQVGNGST--LNQLFPLQIGTDRSWTAISAGGAHTL 1257

Query: 246  ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
            AL  +G ++GWG    G++G G    +    P ++       ++  S G  HS+AL  D 
Sbjct: 1258 ALKANGTLWGWGSNSSGQVGLGYGSLAQYTSPTRIGTAGNWKLI--SAGTYHSMALQTDN 1315

Query: 306  HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
             ++ +G   +G+LG G   + GQ +  P+ I +  N
Sbjct: 1316 TLWGWGSNQYGQLGNGTTSSYGQ-LSFPVKIGSVSN 1350



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 144/335 (42%), Gaps = 77/335 (22%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           S++AWG+   GQ             V   L    V +V AG  +++ +  DG        
Sbjct: 295 SVVAWGNNNYGQ-----------ARVPAGLS--DVIAVSAGGTDTIVLKSDGTIVAWGYN 341

Query: 60  --KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
               +NIP +    S       ++GG+H  A++  G   AWG N YGQ    P   ++  
Sbjct: 342 SHSQDNIPQKPGCFS-----AVSVGGYHSTAINPDGTITAWGSNLYGQA-NVPTGLNNVS 395

Query: 118 RI---------LRRDIVI-----PQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQPW 162
            +         L+ D  +       +  P +  V  +A GG H++ L  +  V +WG  +
Sbjct: 396 AVGIGEGVTVALKSDGTVVTWGHNSKTPPAVSGVTAIAVGGFHALALKPDATVVSWGTDY 455

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                 +  VP    GL  V  IA G +H+LAL+ DG+L AWGNN YGQ+          
Sbjct: 456 ----YGETMVP---AGLNGVSAIAAGFYHSLALKADGSLVAWGNNGYGQVS--------- 499

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            IP  GL+ +T   IAAG  H+ A+  DG V  WG    G+            VP  +  
Sbjct: 500 -IP-AGLNNVT--SIAAGMDHNVAVRSDGTVAAWGSNSSGQ----------ATVPAGL-- 543

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
                + QV+ G  HSVAL  DG + ++G   +G+
Sbjct: 544 ---SGVRQVAAGDLHSVALKTDGTVIAWGDSTYGQ 575



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 20/181 (11%)

Query: 185  IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
            ++ G  H +AL+ DG LW+WG N +GQLG G T  R   +PVQ       + I+AG   +
Sbjct: 1099 VSAGTRHTIALKSDGTLWSWGYNAFGQLGDGTTVNRY--VPVQIGDDNKWISISAGVDFT 1156

Query: 245  TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
             AL  DG ++GWGR + G+LG    D ++      V +    D + +  GG H+ AL  D
Sbjct: 1157 LALKSDGTLWGWGRNDLGQLG----DGTTTFRYSPVQIGNSTDWISIHAGGYHAAALKSD 1212

Query: 305  GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            G ++++G   +G++G G  +    P+++            G DR W A  ++ GG HTLA
Sbjct: 1213 GTLWAWGGNYNGQVGNGSTLNQLFPLQI------------GTDRSWTA--ISAGGAHTLA 1258

Query: 365  I 365
            +
Sbjct: 1259 L 1259



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 139/348 (39%), Gaps = 102/348 (29%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           +++AWG   DGQ           V V   L    V ++ AG+ NS A+  DG        
Sbjct: 218 TVVAWGYNYDGQ-----------VTVPTGLA--GVTAIAAGANNSAAVKTDGTVVVWGMN 264

Query: 59  -TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
            T   N+P+ +     T +   A+GG H +A+   G   AWG N YGQ    P    D  
Sbjct: 265 YTNNNNVPAGL-----TGVAAIAVGG-HVVALKSDGSVVAWGNNNYGQA-RVPAGLSD-- 315

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ 177
                             V  V+AGGT ++VL  +G +  WG         Q ++P +  
Sbjct: 316 ------------------VIAVSAGGTDTIVLKSDGTIVAWGY----NSHSQDNIPQKPG 353

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ--------------LGTGDT------ 217
               V   +VG +H+ A+  DG + AWG+N YGQ              +G G T      
Sbjct: 354 CFSAV---SVGGYHSTAINPDGTITAWGSNLYGQANVPTGLNNVSAVGIGEGVTVALKSD 410

Query: 218 -------QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
                       P  V G++      IA GG+H+ AL  D  V  WG   +G        
Sbjct: 411 GTVVTWGHNSKTPPAVSGVTA-----IAVGGFHALALKPDATVVSWGTDYYGE------- 458

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
               MVP  +N      +  ++ G  HS+AL  DG + ++G   +G++
Sbjct: 459 ---TMVPAGLN-----GVSAIAAGFYHSLALKADGSLVAWGNNGYGQV 498



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 110/272 (40%), Gaps = 74/272 (27%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           + +   +IGG H LA+   G   AWG N YGQ                    +P   +  
Sbjct: 120 SAVASVSIGGSHSLALKSDGTVAAWGSNAYGQSS------------------VPSGLSN- 160

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
             V  +AAG  HS  L  +G V  WG         Q SVP    GL  V  IA G  H L
Sbjct: 161 --VVAIAAGERHSAALKSDGTVIEWGD----NSYGQSSVP---AGLSGVVAIAAGDLHTL 211

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+ DG + AWG N  GQ+    T P        GL+G+T   IAAG  +S A+  DG V
Sbjct: 212 ALKSDGTVVAWGYNYDGQV----TVP-------TGLAGVTA--IAAGANNSAAVKTDGTV 258

Query: 254 YGWG----------------------------RGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
             WG                            + +   + +G+N+     VP  +     
Sbjct: 259 VVWGMNYTNNNNVPAGLTGVAAIAVGGHVVALKSDGSVVAWGNNNYGQARVPAGL----- 313

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
            D++ VS GGT ++ L  DG I ++G   H +
Sbjct: 314 SDVIAVSAGGTDTIVLKSDGTIVAWGYNSHSQ 345



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 126/307 (41%), Gaps = 73/307 (23%)

Query: 40  VRSVVAGSRNSLAICDDGKTKT--------ENIPSQVNALSNTKIVQAAIGGWHCLAVDD 91
           V SV  G  +SLA+  DG             ++PS    LSN  +V  A G  H  A+  
Sbjct: 122 VASVSIGGSHSLALKSDGTVAAWGSNAYGQSSVPS---GLSN--VVAIAAGERHSAALKS 176

Query: 92  QGRAYAWGGNEYGQCG-----------------EEPERKDDT----GRILRRDIVIPQRC 130
            G    WG N YGQ                       + D T    G      + +P   
Sbjct: 177 DGTVIEWGDNSYGQSSVPAGLSGVVAIAAGDLHTLALKSDGTVVAWGYNYDGQVTVPTGL 236

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF 190
           A    V  +AAG  +S  +  +G V  WG  +        +VP    GL  V  IAVG  
Sbjct: 237 AG---VTAIAAGANNSAAVKTDGTVVVWGMNY----TNNNNVP---AGLTGVAAIAVGG- 285

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H +AL+ DG++ AWGNN YGQ            +P  GLS   ++ ++AGG  +  L  D
Sbjct: 286 HVVALKSDGSVVAWGNNNYGQ----------ARVP-AGLSD--VIAVSAGGTDTIVLKSD 332

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G +  WG   H +    DN      +PQK    +      VS GG HS A+  DG I ++
Sbjct: 333 GTIVAWGYNSHSQ----DN------IPQKPGCFS-----AVSVGGYHSTAINPDGTITAW 377

Query: 311 GRGDHGR 317
           G   +G+
Sbjct: 378 GSNLYGQ 384



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 39/195 (20%)

Query: 128 QRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK 183
            +C   L     V  ++  G H + +T +G +W WG         +   PV   GL  V 
Sbjct: 71  NKCNASLTRASKVTNISTFGDHILSITSDGAIWGWGG----STYGETIAPV---GLSAVA 123

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            +++G  H+LAL+ DG + AWG+N YGQ            +P  GLS   +V IAAG  H
Sbjct: 124 SVSIGGSHSLALKSDGTVAAWGSNAYGQ----------SSVP-SGLS--NVVAIAAGERH 170

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S AL  DG V  W          GDN      VP  +       +V ++ G  H++AL  
Sbjct: 171 SAALKSDGTVIEW----------GDNSYGQSSVPAGL-----SGVVAIAAGDLHTLALKS 215

Query: 304 DGHIFSFGRGDHGRL 318
           DG + ++G    G++
Sbjct: 216 DGTVVAWGYNYDGQV 230



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 90/201 (44%), Gaps = 48/201 (23%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P+ +N +S       A G +H LA+   G   AWG N YGQ                  
Sbjct: 461 VPAGLNGVS-----AIAAGFYHSLALKADGSLVAWGNNGYGQ------------------ 497

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK 183
           + IP        V  +AAG  H+V +  +G V  WG         Q +VP  + G+ QV 
Sbjct: 498 VSIPAGLNN---VTSIAAGMDHNVAVRSDGTVAAWGS----NSSGQATVPAGLSGVRQV- 549

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT-LVDIAAGGW 242
             A G  H++AL+ DG + AWG++ YGQ            +P    +GLT +V +AAG  
Sbjct: 550 --AAGDLHSVALKTDGTVIAWGDSTYGQTA----------VP----AGLTDVVAVAAGNG 593

Query: 243 HSTALTDDGEVYGWGRGEHGR 263
           ++ AL   G V GWG    G+
Sbjct: 594 YTLALKSGGTVVGWGDNRFGQ 614


>gi|118095631|ref|XP_413753.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Gallus gallus]
          Length = 4860

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3999 YLWGAGRHGQLAEA-----------GRNVMVPVAAPSFSQAQQVVCGQNCTFVIQANGTV 4047

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4048 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4107

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4108 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGL 4167

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H+VA++ DG  +++FG GD+G+LG G    
Sbjct: 4168 GNT--SNKKLPERVTALEGYQIGQVACGLNHTVAVSTDGSMVWAFGDGDYGKLGLGNSTA 4225

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V I        G G+      K VACG + ++A+ +
Sbjct: 4226 KSSPQKVDI------LCGIGI------KKVACGTQFSVALTK 4255



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGVSIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 155/312 (49%), Gaps = 30/312 (9%)

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            N+   V A S ++  Q   G      +   G   A G   YG+ G+     DD       
Sbjct: 4015 NVMVPVAAPSFSQAQQVVCGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 4067

Query: 123  DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             + +       ++ + V + G+  HS+ LT  G V++WG         G+  +   P ++
Sbjct: 4068 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQI 4127

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +
Sbjct: 4128 EALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQI 4187

Query: 235  VDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+C
Sbjct: 4188 GQVACGLNHTVAVSTDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDILCGIGIKKVAC 4245

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   SVALT+DGH+++FG+     L  GR     +P +VP+          GV      +
Sbjct: 4246 GTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQVPVL--------SGV----FIE 4293

Query: 354  LVACGGRHTLAI 365
             +A G  HTLA+
Sbjct: 4294 DIAVGAEHTLAL 4305



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4046 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4080

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4081 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4132

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4133 EEVV-----------QMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4181

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H +A+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4182 LEGYQIGQVACGLNHTVAVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCGIGIK 4241

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V +L+G  I  ++ G 
Sbjct: 4242 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLSGVFIEDIAVGA 4299

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL+  G ++++G    G+LG G      +P  + +
Sbjct: 4300 EHTLALSSTGDVYAWGSNSEGQLGLGHTNHVREPTLITV 4338



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+++  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGVSIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4094 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 4153

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H +AV   G   +A+G  
Sbjct: 4154 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTVAVSTDGSMVWAFGDG 4213

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + DI+    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4214 DYGKLGLGNSTAKSSPQ--KVDIL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4265

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  IAVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4266 RLIGLPEGRARNHNRPQQVPVLSGVFIEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGLG 4325

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  +  L G  +  I+AG  HS A T
Sbjct: 4326 HTNHVREPTLITVLQGKNIRQISAGRCHSAAWT 4358



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGVSIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|356526924|ref|XP_003532065.1| PREDICTED: uncharacterized protein LOC100797527 [Glycine max]
          Length = 1099

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 156/336 (46%), Gaps = 58/336 (17%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + +     +   A GG H   V  QG  ++WGG   G+ G               D
Sbjct: 295 LPKALESAVVLDVQNIACGGEHAAMVTKQGEVFSWGGESGGRLGHGV------------D 342

Query: 124 IVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ-PWPPGDI---KQIS- 171
             +P    PKLI       +  VA G  H+  +T  G ++TWG   +  G +    Q+S 
Sbjct: 343 SDVPH---PKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSH 399

Query: 172 -VPVRVQG-LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            VP RV G LE   V  I+ G +H   +   G L+ +G+  +G LG GD +  S P  ++
Sbjct: 400 WVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIE 459

Query: 228 GLSGLTLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSSKM 275
            L GL  V  A G WH+ A+ +             G+++ WG G+ GRLG GD  K SK+
Sbjct: 460 SLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGD--KESKL 517

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           VP +V  L   +  QV+CG + +VAL+R GH+++ G   +G LG           +    
Sbjct: 518 VPTRVVTLDEPNFCQVACGHSMTVALSRLGHVYTMGSCVYGHLGN---------TQADGK 568

Query: 336 IPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
           +P P    +G   +   + +ACG  H +A++  +TE
Sbjct: 569 LPTPV---EGKLSKSFVEEIACGAYH-VAVLTSRTE 600



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 140/337 (41%), Gaps = 57/337 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG    G+LG G + +     ++++L    +  V  G  ++ A+   G   T     
Sbjct: 326 VFSWGGESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGT 385

Query: 62  -------------ENIPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                          +P +VN  L    +   + G WH   V   G+ + +G   +G  G
Sbjct: 386 YNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLG 445

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTR------------EG 153
                        R+ + +P+       +R  Q A G  H+  +               G
Sbjct: 446 HGD----------RKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSG 495

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL--ALQEDGALWAWGNN 207
            ++TWG         GD +   VP RV  L++     V   H++  AL   G ++  G+ 
Sbjct: 496 KLFTWGDGDKGRLGHGDKESKLVPTRVVTLDEPNFCQVACGHSMTVALSRLGHVYTMGSC 555

Query: 208 EYGQLGTGDTQPRSQ-PIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            YG LG  +TQ   + P PV+G LS   + +IA G +H   LT   EV+ WG+G +G LG
Sbjct: 556 VYGHLG--NTQADGKLPTPVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGCLG 613

Query: 266 FGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            GD ND+++   P  V  L  + +  ++CG   + A+
Sbjct: 614 HGDTNDRNT---PTLVEALKDKQVKSIACGTNFTAAI 647



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           K   ++P+ +      D+  ++CGG H+  +T+ G +FS+G    GRLG+G         
Sbjct: 290 KMDSLLPKALESAVVLDVQNIACGGEHAAMVTKQGEVFSWGGESGGRLGHG--------- 340

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            V  ++P P+   + +    I +LVACG  HT A+ 
Sbjct: 341 -VDSDVPHPKLI-ESLSNTNI-ELVACGEYHTCAVT 373



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S T +  WG G +G LG G+  +R    +V+AL+  +V+S+  G+  + AIC
Sbjct: 595 LTSRTEVFTWGKGANGCLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAIC 648


>gi|449268693|gb|EMC79542.1| X-linked retinitis pigmentosa GTPase regulator, partial [Columba
           livia]
          Length = 719

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 150/323 (46%), Gaps = 26/323 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K   A  G  H L   ++G  YA GGN  GQ G     +  T
Sbjct: 65  GSKNTVSKPTCVKALKPEKTKLAVCGRNHTLVYTEKGNVYAAGGNSEGQLGLGDTEERST 124

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             ++       Q       ++Q+AAG   S  +T +G ++ WG          D   +SV
Sbjct: 125 FHLI--SFFTNQH-----KIKQLAAGSYTSAAVTEDGQLFVWGDNSEGQIGLADEACVSV 177

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ--PIPVQGLS 230
           P +V   + V  I+ G +H+  +  DG L+ +G  E G+LG    Q ++   P PV G+ 
Sbjct: 178 PCQVDVGKPVSSISCGYYHSALITGDGELYTFGEPENGKLGLLPEQLKNNRVPQPVPGIM 237

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +  +A GG H+  LT+  +VY +G G++G+LG G     +  VP+ V  L    I  
Sbjct: 238 E-KVNKVACGGEHTVVLTET-DVYTFGLGQYGQLGHGTFIFETS-VPKSVKHLRRHKICN 294

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++CG  H+  +  +G +F+FG G HG+LG G +  T Q          P    + +  R+
Sbjct: 295 ITCGENHTAVVAENGLMFTFGDGRHGKLGLGEENYTNQ--------FDPTLCYNFL--RF 344

Query: 351 IAKLVACGGRHTLAIVEWQTEES 373
              LVACGG H L     + E S
Sbjct: 345 TVLLVACGGCHMLVFAAPRPEGS 367



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 154/327 (47%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK++  E+IPS+     N K V  + G  H   V   G+ Y +G N +GQ G   
Sbjct: 8   AVFTFGKSRFAEDIPSKF-WFKNDKPVLISCGDEHTAIVTGNGKLYMFGSNNWGQLG--- 63

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  ++ V    C   L     +    G  H++V T +G+V+  G        
Sbjct: 64  --------LGSKNTVSKPTCVKALKPEKTKLAVCGRNHTLVYTEKGNVYAAGGNSEGQLG 115

Query: 164 PGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++ S    +       ++K +A G++ + A+ EDG L+ WG+N  GQ+G  D    
Sbjct: 116 LGDTEERSTFHLISFFTNQHKIKQLAAGSYTSAAVTEDGQLFVWGDNSEGQIGLADEACV 175

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           S  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG       +  VPQ V
Sbjct: 176 S--VPCQVDVGKPVSSISCGYYHSALITGDGELYTFGEPENGKLGLLPEQLKNNRVPQPV 233

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             +  E + +V+CGG H+V LT +  +++FG G +G+LG+G  +       VP ++   R
Sbjct: 234 PGIM-EKVNKVACGGEHTVVLT-ETDVYTFGLGQYGQLGHGTFIFE---TSVPKSVKHLR 288

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R  I   + CG  HT  + E
Sbjct: 289 -------RHKICN-ITCGENHTAVVAE 307



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 56/305 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKAL-EPYKVRSVVAGSRNSLAICDDGKTKTENI 64
           ++ A G   +GQLG+G+ EER    ++      +K++ + AGS  S A+ +D        
Sbjct: 102 NVYAAGGNSEGQLGLGDTEERSTFHLISFFTNQHKIKQLAAGSYTSAAVTED-------- 153

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
                                       G+ + WG N  GQ G   E            +
Sbjct: 154 ----------------------------GQLFVWGDNSEGQIGLADEAC----------V 175

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQG 178
            +P +      V  ++ G  HS ++T +G ++T+G+P        P  +K   VP  V G
Sbjct: 176 SVPCQVDVGKPVSSISCGYYHSALITGDGELYTFGEPENGKLGLLPEQLKNNRVPQPVPG 235

Query: 179 -LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVD 236
            +E+V  +A G  H + L E   ++ +G  +YGQLG G      S P  V+ L    + +
Sbjct: 236 IMEKVNKVACGGEHTVVLTETD-VYTFGLGQYGQLGHGTFIFETSVPKSVKHLRRHKICN 294

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I  G  H+  + ++G ++ +G G HG+LG G+ + +++  P          ++ V+CGG 
Sbjct: 295 ITCGENHTAVVAENGLMFTFGDGRHGKLGLGEENYTNQFDPTLCYNFLRFTVLLVACGGC 354

Query: 297 HSVAL 301
           H +  
Sbjct: 355 HMLVF 359


>gi|402573744|ref|YP_006623087.1| cell wall binding protein [Desulfosporosinus meridiei DSM 13257]
 gi|402254941|gb|AFQ45216.1| putative cell wall binding protein [Desulfosporosinus meridiei DSM
           13257]
          Length = 955

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 133/267 (49%), Gaps = 42/267 (15%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-----EPERKDDTGRILRRDIVIPQR 129
             + A+ G    LA++  G  + WG N+ GQ G+     +P R   TG            
Sbjct: 22  NFIAASGGSQSMLALNSDGTVWGWGINQNGQIGDGTTNTKPYRVKVTGLA---------- 71

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLI 185
                 V+ +A+G THSV L ++G V+TWG  +      G +K+  +PV+V GL  VK +
Sbjct: 72  -----DVKAIASGTTHSVALQKDGDVFTWGSNFSGELGNGTLKESFLPVQVTGLSDVKAV 126

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           + G    +AL+ DG +WAWG+N  G+LG    +    P+ + GL  ++ V  +A G H+ 
Sbjct: 127 SAGTLFTVALKNDGTVWAWGDNSSGELGNSTGKSSITPVQIPGLVNISAV--SAQGTHTL 184

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           ALTDDG V+ WG               +   P+K+  L+  +IV VS G  H  AL  DG
Sbjct: 185 ALTDDGTVWKWG--------------GTISSPEKLESLS--NIVAVSAGYDHFTALKADG 228

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            ++++G    G+LG G   +   P++V
Sbjct: 229 TVWAWGENGCGQLGDGTITSRTSPIQV 255



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 156/334 (46%), Gaps = 54/334 (16%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------- 59
           WG  ++GQ+G G    + +   V  L    V+++ +G+ +S+A+  DG            
Sbjct: 45  WGINQNGQIGDGTTNTKPYRVKVTGLA--DVKAIASGTTHSVALQKDGDVFTWGSNFSGE 102

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                 K   +P QV  LS+ K V A  G    +A+ + G  +AWG N  G+ G      
Sbjct: 103 LGNGTLKESFLPVQVTGLSDVKAVSA--GTLFTVALKNDGTVWAWGDNSSGELG------ 154

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVP 173
           + TG+      + P +    + +  V+A GTH++ LT +G VW WG          IS P
Sbjct: 155 NSTGK----SSITPVQIPGLVNISAVSAQGTHTLALTDDGTVWKWG--------GTISSP 202

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
            +++ L  +  ++ G  H  AL+ DG +WAWG N  GQLG G    R+ PI V GL+ + 
Sbjct: 203 EKLESLSNIVAVSAGYDHFTALKADGTVWAWGENGCGQLGDGTITSRTSPIQVAGLTEVK 262

Query: 234 LVDIAAGGWHSTALTDDGEVYGWG------RGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
              I+AG  ++ AL  DG V+ WG        +   LG+  N  S   VP   N+     
Sbjct: 263 A--ISAGVRNTIALRQDGTVWVWGIDFTKPMDQPTDLGYHLN-LSPVTVPNLTNVQG--- 316

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              ++ G +  + +T +G + ++G  + G LG G
Sbjct: 317 ---IAAGPSSYLIITAEGSMLTWGF-NQGILGDG 346



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 20/175 (11%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           LAL  DG +W WG N+ GQ+G G T  +   + V GL+ +    IA+G  HS AL  DG+
Sbjct: 34  LALNSDGTVWGWGINQNGQIGDGTTNTKPYRVKVTGLADVKA--IASGTTHSVALQKDGD 91

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG    G LG G   +S   +P +V  L+  D+  VS G   +VAL  DG ++++G 
Sbjct: 92  VFTWGSNFSGELGNGTLKES--FLPVQVTGLS--DVKAVSAGTLFTVALKNDGTVWAWGD 147

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              G LG     +TG+    P+ IP   N             V+  G HTLA+ +
Sbjct: 148 NSSGELGN----STGKSSITPVQIPGLVN----------ISAVSAQGTHTLALTD 188



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 6/108 (5%)

Query: 227 QGLSGLTLVDIAAGGWHST--ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           Q + G+T   IAA G   +  AL  DG V+GWG  ++G++G    D ++   P +V +  
Sbjct: 14  QPVYGVTNNFIAASGGSQSMLALNSDGTVWGWGINQNGQIG----DGTTNTKPYRVKVTG 69

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             D+  ++ G THSVAL +DG +F++G    G LG G    +  P++V
Sbjct: 70  LADVKAIASGTTHSVALQKDGDVFTWGSNFSGELGNGTLKESFLPVQV 117


>gi|428174549|gb|EKX43444.1| hypothetical protein GUITHDRAFT_61168, partial [Guillardia theta
           CCMP2712]
          Length = 308

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 116/235 (49%), Gaps = 21/235 (8%)

Query: 140 AAGGTHSVVLTREGHVWTWGQP---WPPGDIKQISVPVR-----VQGLEQVKLIAVGAFH 191
           A G  H+V LT EG V++WG        G+ K   +P       +  +  +  IA G FH
Sbjct: 4   ACGKLHTVALTEEGRVYSWGCANGALGHGNSKSQLLPKALDRPLIYSMPSITTIACGEFH 63

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            LA+ +DG LW WG N+YGQLG GD +    P  V+ L     +  AAGG HS  LT+  
Sbjct: 64  TLAVGQDGTLWTWGRNQYGQLGHGDCKTHKLPRRVEALEKKICIKAAAGGQHSLVLTEAN 123

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           +VY +G    G+LG     K S   P  V+ L    +  ++CG +HS+AL +   ++S+G
Sbjct: 124 KVYAFGSNVFGQLGLESKVKYS-AAPDIVSRLRRSGVCHITCGYSHSMALLKSEQLYSWG 182

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           R D G+LG G   ++  P  + +             ++   + ++CG  H +A V
Sbjct: 183 RNDCGQLGLGHYRSSPVPEHLTMF------------KKSQVQQISCGYDHNIAFV 225



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 24/260 (9%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V AA G  H +A+ ++GR Y+WG    G  G    +     + L R ++      P +  
Sbjct: 1   VGAACGKLHTVALTEEGRVYSWGCAN-GALGHGNSKSQLLPKALDRPLIYSM---PSITT 56

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLI--AVGAF 190
             +A G  H++ + ++G +WTWG+        GD K   +P RV+ LE+   I  A G  
Sbjct: 57  --IACGEFHTLAVGQDGTLWTWGRNQYGQLGHGDCKTHKLPRRVEALEKKICIKAAAGGQ 114

Query: 191 HNLALQEDGALWAWGNNEYGQLGT-GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           H+L L E   ++A+G+N +GQLG     +  + P  V  L    +  I  G  HS AL  
Sbjct: 115 HSLVLTEANKVYAFGSNVFGQLGLESKVKYSAAPDIVSRLRRSGVCHITCGYSHSMALLK 174

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD----- 304
             ++Y WGR + G+LG G    S   VP+ + +     + Q+SCG  H++A   +     
Sbjct: 175 SEQLYSWGRNDCGQLGLGHYRSSP--VPEHLTMFKKSQVQQISCGYDHNIAFVSEYAGPG 232

Query: 305 ----GHIFSFGRGDHGRLGY 320
                 ++++GRG+ G+LG+
Sbjct: 233 VPPLEKVYTWGRGEEGQLGH 252



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 137/289 (47%), Gaps = 33/289 (11%)

Query: 57  GKTKTENIPSQVN---ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
           G +K++ +P  ++     S   I   A G +H LAV   G  + WG N+YGQ G    + 
Sbjct: 32  GNSKSQLLPKALDRPLIYSMPSITTIACGEFHTLAVGQDGTLWTWGRNQYGQLGHGDCK- 90

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW-----TWGQPWPPGDIK 168
             T ++ RR   + ++     I  + AAGG HS+VLT    V+      +GQ      +K
Sbjct: 91  --THKLPRRVEALEKK-----ICIKAAAGGQHSLVLTEANKVYAFGSNVFGQLGLESKVK 143

Query: 169 QISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP- 225
             + P  V  L +  V  I  G  H++AL +   L++WG N+ GQLG G    RS P+P 
Sbjct: 144 YSAAPDIVSRLRRSGVCHITCGYSHSMALLKSEQLYSWGRNDCGQLGLGHY--RSSPVPE 201

Query: 226 -VQGLSGLTLVDIAAGGWHSTALTDD---------GEVYGWGRGEHGRLGFGDNDKSSKM 275
            +       +  I+ G  H+ A   +          +VY WGRGE G+LG   ++  S+ 
Sbjct: 202 HLTMFKKSQVQQISCGYDHNIAFVSEYAGPGVPPLEKVYTWGRGEEGQLG--HDELYSRC 259

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           VP+ V  L    I  V+ GG  S A+     ++++G    G+LG+G  +
Sbjct: 260 VPKVVQTLLARGIRAVAAGGFSSAAIDEAKQLYTWGCSREGQLGHGDDI 308



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 137/300 (45%), Gaps = 48/300 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALE-PY-----KVRSVVAGSRNSLAICDDGK-- 58
           + +WG   +G LG GN++ +    + KAL+ P       + ++  G  ++LA+  DG   
Sbjct: 19  VYSWGCA-NGALGHGNSKSQ---LLPKALDRPLIYSMPSITTIACGEFHTLAVGQDGTLW 74

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                          KT  +P +V AL     ++AA GG H L + +  + YA+G N +G
Sbjct: 75  TWGRNQYGQLGHGDCKTHKLPRRVEALEKKICIKAAAGGQHSLVLTEANKVYAFGSNVFG 134

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G E + K         DIV   R   +  V  +  G +HS+ L +   +++WG+    
Sbjct: 135 QLGLESKVKYSAAP----DIVSRLR---RSGVCHITCGYSHSMALLKSEQLYSWGRNDCG 187

Query: 161 PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGA---------LWAWGNNEY 209
               G  +   VP  +   +  QV+ I+ G  HN+A   + A         ++ WG  E 
Sbjct: 188 QLGLGHYRSSPVPEHLTMFKKSQVQQISCGYDHNIAFVSEYAGPGVPPLEKVYTWGRGEE 247

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG  +   R  P  VQ L    +  +AAGG+ S A+ +  ++Y WG    G+LG GD+
Sbjct: 248 GQLGHDELYSRCVPKVVQTLLARGIRAVAAGGFSSAAIDEAKQLYTWGCSREGQLGHGDD 307



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 18/136 (13%)

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN---LLAGEDIVQV 291
           V  A G  H+ ALT++G VY WG   +G LG G++   S+++P+ ++   + +   I  +
Sbjct: 1   VGAACGKLHTVALTEEGRVYSWGCA-NGALGHGNSK--SQLLPKALDRPLIYSMPSITTI 57

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           +CG  H++A+ +DG ++++GR  +G+LG+G   T   P  V           + ++++  
Sbjct: 58  ACGEFHTLAVGQDGTLWTWGRNQYGQLGHGDCKTHKLPRRV-----------EALEKKIC 106

Query: 352 AKLVACGGRHTLAIVE 367
            K  A GG+H+L + E
Sbjct: 107 IK-AAAGGQHSLVLTE 121


>gi|301111610|ref|XP_002904884.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262095214|gb|EEY53266.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 527

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 170/383 (44%), Gaps = 63/383 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEER----EWVCVVKALEPYKVRSVVAGSRNSLAI--------- 53
           ++ +GSG+ GQLG G  +++    E+  VV+ L   ++  V  G  +S AI         
Sbjct: 109 MLTFGSGDCGQLGHGVEKDKDLMVEFPLVVRPLVKLEIVRVACGGLHSAAITSAGEVFTW 168

Query: 54  -CDD----GKTKTENIPSQVNAL--SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
            CDD    G+   ENIP++V          VQ   G  H   V   G+ Y WG      C
Sbjct: 169 GCDDDGALGRVGDENIPTKVTGFGPQQATAVQVVGGDCHTAVVTLAGKVYTWG------C 222

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWG-- 159
             + E K        +D    ++  P LI     +  V  G + ++  T +G V++WG  
Sbjct: 223 YRDKEGKQWCDAPSAKDAFKKKQTEPFLIKALDNIADVRCGSSFNLARTNDGRVYSWGLG 282

Query: 160 ------------QPWPPGDIKQISV--------PVRV--QGLEQVKLIAVGAFHNL-ALQ 196
                            GD K   V        PV +    L  VK I  G++H+L AL 
Sbjct: 283 EMGQLGRTVDDQMKDFKGDYKVDMVYNDHLQPKPVTLGNDPLPVVKAIGCGSYHSLFALS 342

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +G L+  G N YGQLG G+T+  ++   V+ LS   +  +  G  HS  LT DG+VY +
Sbjct: 343 SNGYLYTCGLNNYGQLGIGNTENCTELQLVEDLSSKNVAYVDGGSHHSVVLTIDGDVYTF 402

Query: 257 GRGEHGRLGFGDNDKSS--KMVPQKVNLLAGED-----IVQVSCGGTHSVALTRDGHIFS 309
           GR + G+LG  +   +   K  PQKV +   +D     +  +S G  H++ALT    IFS
Sbjct: 403 GRADSGQLGMLETCSTGDFKDRPQKVTIPKPKDGGSRQVCMISSGSNHTLALTESNAIFS 462

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV 332
           +G GD   LG G      +P +V
Sbjct: 463 WGYGDMLALGNGVDRDENKPYQV 485


>gi|395822793|ref|XP_003784693.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Otolemur
            garnettii]
          Length = 4828

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4014 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4048

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4049 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4100

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4101 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4149

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4150 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4209

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4210 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4267

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL  +G ++++G    G+LG G      +P  V +
Sbjct: 4268 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4306



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3967 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4015

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4016 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4075

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4076 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4135

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4136 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4193

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4194 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4223



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 3997 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4049

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4050 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4109

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4110 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4169

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4170 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4227

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4228 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4273



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4062 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4121

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4122 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4181

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4182 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4233

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4234 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4293

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4294 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4326



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|338723782|ref|XP_001915115.2| PREDICTED: LOW QUALITY PROTEIN: e3 ISG15--protein ligase HERC5
           [Equus caballus]
          Length = 966

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 25/237 (10%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
           K+ +  +  G  H +VL+ +G  + +        I+       +Q  + +  I  G +H+
Sbjct: 41  KMKIHSMDQGAEHLLVLSSDGKPFEYNY-----SIEHARFQCVLQE-KNIIQITCGDYHS 94

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDD 250
           LAL + G L+AWG N YGQLG G T   S P P  V+ LSG+ LV I+AG  HS AL+  
Sbjct: 95  LALSKGGELFAWGQNTYGQLGVGRTFA-STPTPQIVEHLSGVPLVQISAGEAHSMALSMS 153

Query: 251 GEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
             VY WGR + G+LG G  N+K S   P  +  L  +++  ++CGG+H+  LT+DG +F+
Sbjct: 154 RNVYSWGRNDCGQLGLGHTNNKDS---PSLIEALDNQEVEFLACGGSHTALLTKDGLVFT 210

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           FG G  G+LG+        P  V           + V +R     +ACG RHTLA V
Sbjct: 211 FGAGKCGQLGHNSTQNELTPCLV----------TELVGKR--VTQIACGRRHTLAYV 255



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 114/215 (53%), Gaps = 20/215 (9%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV---------PVRVQGLEQVKL-- 184
           + Q+  G  HS+ L++ G ++ WGQ        Q+ V         P  V+ L  V L  
Sbjct: 84  IIQITCGDYHSLALSKGGELFAWGQ----NTYGQLGVGRTFASTPTPQIVEHLSGVPLVQ 139

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           I+ G  H++AL     +++WG N+ GQLG G T  +  P  ++ L    +  +A GG H+
Sbjct: 140 ISAGEAHSMALSMSRNVYSWGRNDCGQLGLGHTNNKDSPSLIEALDNQEVEFLACGGSHT 199

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
             LT DG V+ +G G+ G+L  G N   +++ P  V  L G+ + Q++CG  H++A   D
Sbjct: 200 ALLTKDGLVFTFGAGKCGQL--GHNSTQNELTPCLVTELVGKRVTQIACGRRHTLAYVSD 257

Query: 305 -GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            G +FSFG G+ G+LG G   T  Q + +P+ +P+
Sbjct: 258 LGKVFSFGSGEGGQLGNG--ATHHQLIPLPMKLPS 290



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 30/266 (11%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGR 94
           K+ S+  G+ + L +  DGK    N   +       L    I+Q   G +H LA+   G 
Sbjct: 43  KIHSMDQGAEHLLVLSSDGKPFEYNYSIEHARFQCVLQEKNIIQITCGDYHSLALSKGGE 102

Query: 95  AYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
            +AWG N YGQ G         T +I+     +P        + Q++AG  HS+ L+   
Sbjct: 103 LFAWGQNTYGQLGVGRTFASTPTPQIVEHLSGVP--------LVQISAGEAHSMALSMSR 154

Query: 154 HVWTWGQPWPPGDIKQISV--------PVRVQGL--EQVKLIAVGAFHNLALQEDGALWA 203
           +V++WG+     D  Q+ +        P  ++ L  ++V+ +A G  H   L +DG ++ 
Sbjct: 155 NVYSWGR----NDCGQLGLGHTNNKDSPSLIEALDNQEVEFLACGGSHTALLTKDGLVFT 210

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHG 262
           +G  + GQLG   TQ    P  V  L G  +  IA G  H+ A   D G+V+ +G GE G
Sbjct: 211 FGAGKCGQLGHNSTQNELTPCLVTELVGKRVTQIACGRRHTLAYVSDLGKVFSFGSGEGG 270

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDI 288
           +LG G      +++P  + L + E++
Sbjct: 271 QLGNGATHH--QLIPLPMKLPSNEEL 294



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + ++ +WG  + GQLG+G+   ++   +++AL+  +V  +  G  ++  +  DG   
Sbjct: 150 LSMSRNVYSWGRNDCGQLGLGHTNNKDSPSLIEALDNQEVEFLACGGSHTALLTKDGLVF 209

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G  H LA V D G+ +++G  E 
Sbjct: 210 TFGAGKCGQLGHNSTQNELTPCLVTELVGKRVTQIACGRRHTLAYVSDLGKVFSFGSGEG 269

Query: 104 GQCG 107
           GQ G
Sbjct: 270 GQLG 273



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 34/175 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-----VVKALEPYKVRSVVAGSRNSLAICDD----- 56
           + AWG    GQLG+G    R +       +V+ L    +  + AG  +S+A+        
Sbjct: 103 LFAWGQNTYGQLGVG----RTFASTPTPQIVEHLSGVPLVQISAGEAHSMALSMSRNVYS 158

Query: 57  -----------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                      G T  ++ PS + AL N ++   A GG H   +   G  + +G  + GQ
Sbjct: 159 WGRNDCGQLGLGHTNNKDSPSLIEALDNQEVEFLACGGSHTALLTKDGLVFTFGAGKCGQ 218

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTWG 159
            G    + + T  ++    ++ +R      V Q+A G  H++    + G V+++G
Sbjct: 219 LGHNSTQNELTPCLVTE--LVGKR------VTQIACGRRHTLAYVSDLGKVFSFG 265


>gi|42572533|ref|NP_974362.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|9279617|dbj|BAB01075.1| unnamed protein product [Arabidopsis thaliana]
 gi|110740358|dbj|BAF02074.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643596|gb|AEE77117.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 532

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 169/361 (46%), Gaps = 49/361 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S   +  +G    GQLG G+ E+   +  V++L+  ++    AG+  ++ I DDGK  
Sbjct: 158 VTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVY 217

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           TK    P  V +L N  +VQAAIG +    +  +G+ Y +    
Sbjct: 218 ACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGN 277

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH---VWTWG 159
            G+ G + E  D    +  R ++ P    P   V Q+AAG  + + L  + +   V++ G
Sbjct: 278 DGRLGHQTEAAD----VEPRPLLGPLENVP---VVQIAAGYCYLLALACQPNGMSVYSVG 330

Query: 160 QPW-------PPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
                        D K   V  + Q L  Q +++A GA+H   + +DG +  WG   YG 
Sbjct: 331 CGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGC 390

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG----FG 267
           LG G+ +  S P  V+GLS +  V +A G + +  ++DDG+VY +G GE   LG    F 
Sbjct: 391 LGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFD 450

Query: 268 D--NDKSSKMVPQKVNLL--AGEDIVQVSCGGT-----HSVALTRDGHIFSFGRGDHGRL 318
           +  N  ++ + P  V  L    E +VQ+S   +     H+ ALT  G +F+FG GD G+L
Sbjct: 451 EQGNRHANVLSPTVVTSLKQVNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQL 510

Query: 319 G 319
           G
Sbjct: 511 G 511



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 129/282 (45%), Gaps = 32/282 (11%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T+ E     V +L   +I+QAA G    + + D G+ YA        CG+E   + + 
Sbjct: 178 GHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYA--------CGKESFGEAEY 229

Query: 117 GRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTW--------GQPWPPGD 166
           G    + +  PQ       + V Q A G   + VL+REG V+T+        G      D
Sbjct: 230 GGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAAD 289

Query: 167 IKQISVPVRVQG-LEQVKLIAVGA----FHNLALQEDG-ALWAWGNNEYGQLGTGDTQPR 220
           ++    P  + G LE V ++ + A       LA Q +G ++++ G    G+LG G     
Sbjct: 290 VE----PRPLLGPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDE 345

Query: 221 SQPIPVQGLSGLTLVD--IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             P  ++    L L    +AAG WH+  +  DG V  WG G +G LG G+ +  S  VP+
Sbjct: 346 KYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES--VPK 403

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            V  L+    V V+ G   +  ++ DG ++SFG G+   LG+
Sbjct: 404 VVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGH 445



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%)

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H++A+   G ++ +G N  GQLG G T+  ++  PV+ L G+ ++  AAG   +  ++DD
Sbjct: 154 HSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDD 213

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+VY  G+   G   +G         PQ V  L    +VQ + G   +  L+R+G +++F
Sbjct: 214 GKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTF 273

Query: 311 GRGDHGRLGYGRKVTTGQP 329
             G+ GRLG+  +    +P
Sbjct: 274 SWGNDGRLGHQTEAADVEP 292



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 26/270 (9%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           QA  G  H +AV  +G  Y +G N  GQ G      +D  RI       P R    + + 
Sbjct: 147 QAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHG--HTEDEARIQ------PVRSLQGVRII 198

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLI--AVGA 189
           Q AAG   +++++ +G V+  G+       +     K ++ P  V  L+ + ++  A+G 
Sbjct: 199 QAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGN 258

Query: 190 FHNLALQEDGALW--AWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTA 246
           +    L  +G ++  +WGN+  G+LG        +P P+ G L  + +V IAAG  +  A
Sbjct: 259 YFTAVLSREGKVYTFSWGND--GRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLA 316

Query: 247 LT---DDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           L    +   VY  G G  G+LG G   D+    V ++  +L  +  V V+ G  H+  + 
Sbjct: 317 LACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRV-VAAGAWHAAVVG 375

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +DG + ++G G +G LG+G +     P  V
Sbjct: 376 QDGRVCTWGWGRYGCLGHGNEECESVPKVV 405



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  HS A+T  GEVY +G    G+LG G  +  +++ P  V  L G  I+Q + G   +
Sbjct: 150 AGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQP--VRSLQGVRIIQAAAGAART 207

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           + ++ DG +++ G+   G   YG + T  +P+  P  + + +N
Sbjct: 208 MLISDDGKVYACGKESFGEAEYGGQGT--KPVTTPQLVTSLKN 248



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 57/227 (25%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV--RSVVAGSRNSLAICDDGKTKT-- 61
           S+ + G G  G+LG G+  + ++  V++  +   +  R V AG+ ++  +  DG+  T  
Sbjct: 325 SVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWG 384

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                         E++P  V  LS+ K V  A G +    V D G  Y++G  E    G
Sbjct: 385 WGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLG 444

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
             P   +                           G  H+ VL+          P     +
Sbjct: 445 HHPSFDEQ--------------------------GNRHANVLS----------PTVVTSL 468

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           KQ++   R+  +     I   A H  AL E G L+A+G  + GQLGT
Sbjct: 469 KQVNE--RMVQISLTNSIYWNA-HTFALTESGKLFAFGAGDQGQLGT 512


>gi|338717875|ref|XP_001918080.2| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1-like [Equus caballus]
          Length = 4860

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4046 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4080

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4081 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4132

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4133 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4181

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4182 LEGYQIGQVACGLNHTLAVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4241

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4242 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4299

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL  +G ++++G    G+LG G      +P  V +
Sbjct: 4300 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4338



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3999 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4047

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4048 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4107

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4108 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4167

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4168 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSTDGSMVWAFGDGDYGKLGLGNSTA 4225

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4226 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4255



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ V  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLVEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4029 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4081

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4082 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4141

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4142 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4201

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4202 TDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4259

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4260 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4305



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLVEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4094 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4153

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV   G   +A+G  
Sbjct: 4154 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSTDGSMVWAFGDG 4213

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4214 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4265

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4266 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4325

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4326 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4358



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  V+ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLVEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|294816128|ref|ZP_06774771.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444463|ref|ZP_08219197.1| regulator of chromosome condensation-like protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294328727|gb|EFG10370.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 406

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 168/366 (45%), Gaps = 46/366 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAG---SRNSLAICDDGKT--- 59
           ++++WG+G  GQLG G+  +      V +L    V  + AG   S +S A+   G T   
Sbjct: 44  TVLSWGAGRTGQLGNGSLTDSLTPTSVTSLFRSDVNKMSAGGTSSADSFALALVGTTLKS 103

Query: 60  --------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                           + +P+ V  L   KI   A GG H LA+D  G+ Y+WG N YGQ
Sbjct: 104 WGDNASGQLGNGGRADQTVPAVVPGLQ--KIKDVAAGGRHALALDTDGQVYSWGDNSYGQ 161

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G    R  D       D ++P R      V+QV+AG   S+ L   G V++WG+     
Sbjct: 162 LGN--NRTGD-------DRILPDRVQGLPKVKQVSAGCDFSLALLESGEVYSWGRGMYGQ 212

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              GD    SVPV+V  L  +  I  G  H LA      + +WG N YGQLG       S
Sbjct: 213 LGNGDYAVSSVPVQVTDLTNIVSIDAGCHHALAQTNANTVKSWGYNLYGQLGNSTNVSSS 272

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           + + V  L  ++  +I AG +H+ A   D  V+GWG  ++G+L   + D++ ++   +VN
Sbjct: 273 KAVDVAWLKDVS--EIEAGAFHNYAKGSDSVVWGWGNNQYGQL--LEKDETFELNVSRVN 328

Query: 282 LLAG------EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
             A       + +  ++ G  H VA+  D  +F++G    G+LG G  V   + + +   
Sbjct: 329 HNAPVTIERLKGVQHLAAGLRHGVAVIGD-TVFTWGFNSEGQLGNGTTVARFESVNILKE 387

Query: 336 IPAPRN 341
             A +N
Sbjct: 388 GAAVKN 393



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 20/138 (14%)

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           LTL+ ++A    + A   +  V  WG G  G+LG G    +  + P  V  L   D+ ++
Sbjct: 24  LTLLSLSATVPRAVAGEVNPTVLSWGAGRTGQLGNG--SLTDSLTPTSVTSLFRSDVNKM 81

Query: 292 SCGGTH---SVALTRDGHIF-SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           S GGT    S AL   G    S+G    G+LG G +     P  VP           G+ 
Sbjct: 82  SAGGTSSADSFALALVGTTLKSWGDNASGQLGNGGRADQTVPAVVP-----------GLQ 130

Query: 348 RRWIAKLVACGGRHTLAI 365
           +    K VA GGRH LA+
Sbjct: 131 K---IKDVAAGGRHALAL 145


>gi|146298949|ref|YP_001193540.1| regulator of chromosome condensation, RCC1 [Flavobacterium
           johnsoniae UW101]
 gi|146153367|gb|ABQ04221.1| regulator of chromosome condensation, RCC1 [Flavobacterium
           johnsoniae UW101]
          Length = 1679

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 30/278 (10%)

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
           AA G  H +AV + G  + WG N+ GQ G                I IP +       + 
Sbjct: 24  AAAGYSHTVAVRNDGTLWTWGNNDEGQLGNSTPAA----------INIPTKMGTANNWKT 73

Query: 139 VAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRVQGLEQVKLIAVGA 189
            AAG  H+V L  +G +W WG     G + Q+         ++P ++      + IA G 
Sbjct: 74  AAAGWGHTVALKTDGTLWAWGY----GRLGQLGNGNYNTNFNLPQQIGTENDWQTIAAGH 129

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H +AL+ DG LWAWGNN  GQLG G +  R+ P  +   S    + I+AGG ++ AL  
Sbjct: 130 GHTVALKNDGTLWAWGNNFSGQLGNGTSFDRNTPTKIG--SDSNWLAISAGGLYTIALKK 187

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG ++ WG+  +G L  GD   ++  VP+++      D   ++ G  H++A+  DG ++ 
Sbjct: 188 DGTLWAWGKNTYGTL--GDGTTTNNRVPKQIG--TDTDWKTIAAGSDHTIAIKNDGSLWI 243

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           +G+  +G LG    +    P ++  +    ++A  GVD
Sbjct: 244 WGKNTYGALGDNTTIDKIVPTKIGTDTDW-KSAEGGVD 280



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 27/235 (11%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-----ISVPVRVQGLEQVKLIAVGAFH 191
           +  AAG +H+V +  +G +WTWG     G +       I++P ++      K  A G  H
Sbjct: 22  KTAAAGYSHTVAVRNDGTLWTWGNN-DEGQLGNSTPAAINIPTKMGTANNWKTAAAGWGH 80

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            +AL+ DG LWAWG    GQLG G+       +P Q  +      IAAG  H+ AL +DG
Sbjct: 81  TVALKTDGTLWAWGYGRLGQLGNGNYNTNFN-LPQQIGTENDWQTIAAGHGHTVALKNDG 139

Query: 252 EVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            ++ WG    G+LG G + D+++   P K+   +  + + +S GG +++AL +DG ++++
Sbjct: 140 TLWAWGNNFSGQLGNGTSFDRNT---PTKIG--SDSNWLAISAGGLYTIALKKDGTLWAW 194

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+  +G LG G       P ++            G D  W  K +A G  HT+AI
Sbjct: 195 GKNTYGTLGDGTTTNNRVPKQI------------GTDTDW--KTIAAGSDHTIAI 235



 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 150/345 (43%), Gaps = 41/345 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++  WG+ ++GQLG  N+         K       ++  AG  +++A+  DG        
Sbjct: 39  TLWTWGNNDEGQLG--NSTPAAINIPTKMGTANNWKTAAAGWGHTVALKTDGTLWAWGYG 96

Query: 59  ----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N+P Q+   ++ + + A  G  H +A+ + G  +AWG N  GQ G 
Sbjct: 97  RLGQLGNGNYNTNFNLPQQIGTENDWQTIAAGHG--HTVALKNDGTLWAWGNNFSGQLGN 154

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                 +T          P +         ++AGG +++ L ++G +W WG+        
Sbjct: 155 GTSFDRNT----------PTKIGSDSNWLAISAGGLYTIALKKDGTLWAWGKNTYGTLGD 204

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G      VP ++      K IA G+ H +A++ DG+LW WG N YG LG  D     + +
Sbjct: 205 GTTTNNRVPKQIGTDTDWKTIAAGSDHTIAIKNDGSLWIWGKNTYGALG--DNTTIDKIV 262

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           P +  +         G  ++ A+  DG ++ WG    G   FG+  K + ++P  V +  
Sbjct: 263 PTKIGTDTDWKSAEGGVDYTVAIKTDGTLWAWGYNADGV--FGNGSKINSLIP--VQIGT 318

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
            ++   VS G  H+VA+  D  ++S+G   +G+LG G  +    P
Sbjct: 319 EKNWQMVSGGSVHTVAVKTDESLWSWGNNSYGQLGDGTSIEKNIP 363


>gi|296213415|ref|XP_002753260.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 isoform 1
            [Callithrix jacchus]
 gi|390468428|ref|XP_003733941.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 isoform 2
            [Callithrix jacchus]
          Length = 4860

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4046 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4080

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4081 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4132

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4133 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4181

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4182 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4241

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V +LAG  I  V+ G 
Sbjct: 4242 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGA 4299

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4300 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4336



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3999 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4047

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4048 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4107

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4108 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4167

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4168 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4225

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4226 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4255



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4029 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4081

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4082 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4141

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4142 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4201

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4202 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4259

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P +VP+          GV    + + VA G  HTLA+
Sbjct: 4260 YTFGQDRLIGLPEGRARNHNRPQQVPVLA--------GV----VIEDVAVGAEHTLAL 4305



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4094 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4153

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4154 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4213

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4214 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4265

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4266 RLIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4325

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4326 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4358



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|428173156|gb|EKX42060.1| hypothetical protein GUITHDRAFT_95823 [Guillardia theta CCMP2712]
          Length = 546

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 126/254 (49%), Gaps = 25/254 (9%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI--VR 137
           + G  HC AV D G  Y WG   YGQ G      DD       D +IPQ   P++   V+
Sbjct: 279 SFGAGHCAAVTDTGLVYTWGQGRYGQLGH----GDDV------DKIIPQPV-PRIKGEVK 327

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ----VKLIAVGA 189
            V+AG  H+V +T  G ++TWG          D  Q  +P  V    +    V     G 
Sbjct: 328 SVSAGFYHTVAVTHHGALFTWGDGKEGKLGHNDNAQRLIPTLVAAFIEWGMPVAAAQAGG 387

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H L L   G ++++G+ + G+LG G+   +  P  +  L     V IAAG  HS ALTD
Sbjct: 388 SHTLVLNRRGQVFSFGSGDSGRLGHGNDNDQWSPTFLSALESERCVSIAAGFAHSVALTD 447

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVALTRDGHI 307
            G++Y WG G+ GRLG G +  S +++P+K+ L++ + I  + V+ G  H+     +G +
Sbjct: 448 QGQIYTWGCGKLGRLGHGSD--SDEVLPRKLALISHDTIKAIAVAAGEAHTCIFRSEGSL 505

Query: 308 FSFGRGDHGRLGYG 321
            + GR  HGR+  G
Sbjct: 506 ITLGRVSHGRMAEG 519



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 108/199 (54%), Gaps = 15/199 (7%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD--IKQISVPV-RVQGLEQVKLI 185
           +++   ++ G  H   +T  G V+TWGQ        GD   K I  PV R++G  +VK +
Sbjct: 272 RVVFSALSFGAGHCAAVTDTGLVYTWGQGRYGQLGHGDDVDKIIPQPVPRIKG--EVKSV 329

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS--GLTLVDIAAGGWH 243
           + G +H +A+   GAL+ WG+ + G+LG  D   R  P  V      G+ +    AGG H
Sbjct: 330 SAGFYHTVAVTHHGALFTWGDGKEGKLGHNDNAQRLIPTLVAAFIEWGMPVAAAQAGGSH 389

Query: 244 STALTDDGEVYGWGRGEHGRLGFG-DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           +  L   G+V+ +G G+ GRLG G DND+ S   P  ++ L  E  V ++ G  HSVALT
Sbjct: 390 TLVLNRRGQVFSFGSGDSGRLGHGNDNDQWS---PTFLSALESERCVSIAAGFAHSVALT 446

Query: 303 RDGHIFSFGRGDHGRLGYG 321
             G I+++G G  GRLG+G
Sbjct: 447 DQGQIYTWGCGKLGRLGHG 465



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 24/173 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEER----------EWVCVVKALEPYKVRSVVAGSRN---SLA 52
           ++  WG G++G+LG  +N +R          EW   V A +     ++V   R    S  
Sbjct: 344 ALFTWGDGKEGKLGHNDNAQRLIPTLVAAFIEWGMPVAAAQAGGSHTLVLNRRGQVFSFG 403

Query: 53  ICDDGKTKTEN-----IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
             D G+    N      P+ ++AL + + V  A G  H +A+ DQG+ Y WG  + G+ G
Sbjct: 404 SGDSGRLGHGNDNDQWSPTFLSALESERCVSIAAGFAHSVALTDQGQIYTWGCGKLGRLG 463

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
                  D+  +L R + +      K I   VAAG  H+ +   EG + T G+
Sbjct: 464 H----GSDSDEVLPRKLALISHDTIKAIA--VAAGEAHTCIFRSEGSLITLGR 510



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 105/237 (44%), Gaps = 37/237 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +  WG G  GQLG G++ ++     V  ++  +V+SV AG  +++A+   G   T     
Sbjct: 294 VYTWGQGRYGQLGHGDDVDKIIPQPVPRIKG-EVKSVSAGFYHTVAVTHHGALFTWGDGK 352

Query: 62  -----------ENIPSQVNALSN--TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        IP+ V A       +  A  GG H L ++ +G+ +++G  + G+ G 
Sbjct: 353 EGKLGHNDNAQRLIPTLVAAFIEWGMPVAAAQAGGSHTLVLNRRGQVFSFGSGDSGRLGH 412

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWP 163
             +    +   L    +  +RC        +AAG  HSV LT +G ++TW     G+   
Sbjct: 413 GNDNDQWSPTFL--SALESERCV------SIAAGFAHSVALTDQGQIYTWGCGKLGRLGH 464

Query: 164 PGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGD 216
             D  ++ +P ++  +  + +K IAV A   H    + +G+L   G   +G++  G 
Sbjct: 465 GSDSDEV-LPRKLALISHDTIKAIAVAAGEAHTCIFRSEGSLITLGRVSHGRMAEGS 520


>gi|426344976|ref|XP_004039179.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Gorilla gorilla gorilla]
          Length = 1016

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 141/287 (49%), Gaps = 41/287 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGAEHMLILSSDGKPF--------------EYDNYSMKHLRFEN 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           V+ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 VLQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE+GQLG G T+ +  P  ++GL   
Sbjct: 185 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 244 KVEFVACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGYRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           CG  H++A   D G +FSFG G  G+LG G   T  Q M +P+ + +
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGG--TRDQLMPLPVKVSS 346



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSVDQGAEHMLILSSDGKPFEYDN----YSMKHLRFENVLQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  + +  V+CGG+HS  LT+DG +F+FG G 
Sbjct: 214 SWGKNEFGQLGLGHTE--SKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V           + V  R     +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLV----------AELVGYR--VTQIACGRWHTLAYV 311



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 128/262 (48%), Gaps = 33/262 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGK-TKTENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK  + +N   +     N L   KI+Q   G +H LA+   G
Sbjct: 98  KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFENVLQEKKIIQITCGDYHSLALSKGG 157

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 158 ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 203

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           + L+  G++++WG+        G  +    P  ++GL  ++V+ +A G  H+  L +DG 
Sbjct: 204 MALSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGL 263

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
           L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+ A   D G+V+ +G G
Sbjct: 264 LFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSG 323

Query: 260 EHGRLGFGDNDKSSKMVPQKVN 281
           + G+LG G        +P KV+
Sbjct: 324 KDGQLGNGGTRDQLMPLPVKVS 345



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E +++  +++ L+  KV  V  G  +S  +  DG   
Sbjct: 206 LSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 42/267 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 159 LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 218

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS +  L N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 219 EFGQLGLGHTESKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHN 278

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 279 STQNE------LRPCLVAELVGYR--VTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGN 330

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDG----ALWAWGNNEYGQLGTGDTQ 218
            G   Q+  +PV+V   E++KL +  +   L +   G     LW    N Y  L      
Sbjct: 331 GGTRDQLMPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNL------ 384

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHST 245
            R+ P   +G     + D+    W ST
Sbjct: 385 KRTIPTLNEGTVKRWIADVETKRWQST 411


>gi|18404804|ref|NP_566789.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|14334716|gb|AAK59536.1| unknown protein [Arabidopsis thaliana]
 gi|16323434|gb|AAL15211.1| unknown protein [Arabidopsis thaliana]
 gi|332643597|gb|AEE77118.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 432

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 169/361 (46%), Gaps = 49/361 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S   +  +G    GQLG G+ E+   +  V++L+  ++    AG+  ++ I DDGK  
Sbjct: 58  VTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVY 117

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           TK    P  V +L N  +VQAAIG +    +  +G+ Y +    
Sbjct: 118 ACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGN 177

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH---VWTWG 159
            G+ G + E  D    +  R ++ P    P   V Q+AAG  + + L  + +   V++ G
Sbjct: 178 DGRLGHQTEAAD----VEPRPLLGPLENVP---VVQIAAGYCYLLALACQPNGMSVYSVG 230

Query: 160 QPW-------PPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
                        D K   V  + Q L  Q +++A GA+H   + +DG +  WG   YG 
Sbjct: 231 CGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGC 290

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG----FG 267
           LG G+ +  S P  V+GLS +  V +A G + +  ++DDG+VY +G GE   LG    F 
Sbjct: 291 LGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFD 350

Query: 268 D--NDKSSKMVPQKVNLL--AGEDIVQVSCGGT-----HSVALTRDGHIFSFGRGDHGRL 318
           +  N  ++ + P  V  L    E +VQ+S   +     H+ ALT  G +F+FG GD G+L
Sbjct: 351 EQGNRHANVLSPTVVTSLKQVNERMVQISLTNSIYWNAHTFALTESGKLFAFGAGDQGQL 410

Query: 319 G 319
           G
Sbjct: 411 G 411



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 130/278 (46%), Gaps = 24/278 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T+ E     V +L   +I+QAA G    + + D G+ YA        CG+E   + + 
Sbjct: 78  GHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYA--------CGKESFGEAEY 129

Query: 117 GRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWT--WGQPWPPGDIKQIS- 171
           G    + +  PQ       + V Q A G   + VL+REG V+T  WG     G   + + 
Sbjct: 130 GGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAAD 189

Query: 172 -VPVRVQG-LEQVKLIAVGAFH----NLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPI 224
             P  + G LE V ++ + A +     LA Q +G ++++ G    G+LG G       P 
Sbjct: 190 VEPRPLLGPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPR 249

Query: 225 PVQGLSGLTLVD--IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            ++    L L    +AAG WH+  +  DG V  WG G +G LG G+ +  S  VP+ V  
Sbjct: 250 VIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES--VPKVVEG 307

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           L+    V V+ G   +  ++ DG ++SFG G+   LG+
Sbjct: 308 LSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGH 345



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 3/150 (2%)

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H++A+   G ++ +G N  GQLG G T+  ++  PV+ L G+ ++  AAG   +  ++DD
Sbjct: 54  HSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDD 113

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+VY  G+   G   +G         PQ V  L    +VQ + G   +  L+R+G +++F
Sbjct: 114 GKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTF 173

Query: 311 GRGDHGRLGYGRKVTTGQPMEV--PI-NIP 337
             G+ GRLG+  +    +P  +  P+ N+P
Sbjct: 174 SWGNDGRLGHQTEAADVEPRPLLGPLENVP 203



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 26/270 (9%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           QA  G  H +AV  +G  Y +G N  GQ G      +D  RI       P R    + + 
Sbjct: 47  QAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHG--HTEDEARIQ------PVRSLQGVRII 98

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLI--AVGA 189
           Q AAG   +++++ +G V+  G+       +     K ++ P  V  L+ + ++  A+G 
Sbjct: 99  QAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGN 158

Query: 190 FHNLALQEDGALW--AWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTA 246
           +    L  +G ++  +WGN+  G+LG        +P P+ G L  + +V IAAG  +  A
Sbjct: 159 YFTAVLSREGKVYTFSWGND--GRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLA 216

Query: 247 LT---DDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           L    +   VY  G G  G+LG G   D+    V ++  +L  +  V V+ G  H+  + 
Sbjct: 217 LACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRV-VAAGAWHAAVVG 275

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +DG + ++G G +G LG+G +     P  V
Sbjct: 276 QDGRVCTWGWGRYGCLGHGNEECESVPKVV 305



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  HS A+T  GEVY +G    G+LG G  +  +++ P  V  L G  I+Q + G   +
Sbjct: 50  AGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQP--VRSLQGVRIIQAAAGAART 107

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           + ++ DG +++ G+   G   YG + T  +P+  P  + + +N
Sbjct: 108 MLISDDGKVYACGKESFGEAEYGGQGT--KPVTTPQLVTSLKN 148



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 88/227 (38%), Gaps = 57/227 (25%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV--RSVVAGSRNSLAICDDGKTKT-- 61
           S+ + G G  G+LG G+  + ++  V++  +   +  R V AG+ ++  +  DG+  T  
Sbjct: 225 SVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWG 284

Query: 62  --------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                         E++P  V  LS+ K V  A G +    V D G  Y++G  E    G
Sbjct: 285 WGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLG 344

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
             P   +                           G  H+ VL+          P     +
Sbjct: 345 HHPSFDEQ--------------------------GNRHANVLS----------PTVVTSL 368

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           KQ++   R+  +     I   A H  AL E G L+A+G  + GQLGT
Sbjct: 369 KQVNE--RMVQISLTNSIYWNA-HTFALTESGKLFAFGAGDQGQLGT 412


>gi|402869932|ref|XP_003898997.1| PREDICTED: LOW QUALITY PROTEIN: E3 ISG15--protein ligase HERC5
           [Papio anubis]
          Length = 1023

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 125/234 (53%), Gaps = 25/234 (10%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNL 193
           +  V  G  H ++L+ +G  + +   +    ++  S+      L++ K+I +  G +H+L
Sbjct: 99  IHSVDQGADHMLILSSDGKPFEYD--YSMKHLRSESI------LQEKKIIQITCGDYHSL 150

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           AL + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G 
Sbjct: 151 ALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGN 210

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG+ E G+LG G  +  SK  P  +  L  + +  ++CGG+HS  LT+DG +F+FG 
Sbjct: 211 VYSWGKNEFGQLGLGHTE--SKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFGA 268

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           G HG+LG+       +P  V          G+ V +      +ACG  HTLA V
Sbjct: 269 GKHGQLGHNSTQNELRPCLVA------ELVGNRVTQ------IACGRWHTLAYV 310



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 40/284 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ + +               D + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGADHMLILSSDGKPFEY---------------DYSMKHLRSES 132

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 133 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 183

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE+GQLG G T+ +  P  ++ L   
Sbjct: 184 -VEHLAGVPLAQISAGEAHSMALSMSGNVYSWGKNEFGQLGLGHTESKDSPSLIEALDNQ 242

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 243 KVEFLACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGNRVTQIA 300

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           CG  H++A   D G +FSFG G  G+LG G  +    P+ V ++
Sbjct: 301 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTLDQLIPLPVKVS 344



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 129/312 (41%), Gaps = 45/312 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 158 LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNVYSWGKN 217

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS + AL N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 218 EFGQLGLGHTESKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLFTFGAGKHGQLGHN 277

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 278 STQNE------LRPCLVAELVGNR--VTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGN 329

Query: 164 PGDIKQ-ISVPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G + Q I +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 330 GGTLDQLIPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 384

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P   +G     + D+    WHST   +  E++       G   F    ++++M+P 
Sbjct: 385 -RTIPTLNEGTVKRWIADVETKRWHSTK-REIQEIFSSPACLTG--SFLRKRRTAEMMPV 440

Query: 279 KVNLLAGEDIVQ 290
            ++L    +I +
Sbjct: 441 YLDLNKARNIFK 452



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + ++ +WG  E GQLG+G+ E ++   +++AL+  KV  +  G  +S  +  DG   
Sbjct: 205 LSMSGNVYSWGKNEFGQLGLGHTESKDSPSLIEALDNQKVEFLACGGSHSALLTQDGLLF 264

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 265 TFGAGKHGQLGHNSTQNELRPCLVAELVGNRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 324

Query: 104 GQCG 107
           GQ G
Sbjct: 325 GQLG 328


>gi|42573750|ref|NP_974971.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
 gi|332010006|gb|AED97389.1| regulator of chromosome condensation repeat-containing protein
           [Arabidopsis thaliana]
          Length = 383

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 132/262 (50%), Gaps = 30/262 (11%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G+  +  +P+         I   A+GG H +A+  QG  + WG   +G  G         
Sbjct: 66  GQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGH-------- 117

Query: 117 GRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ----- 169
            ++  R++V P+R        +  +A  GTH+  +T  G ++ WG+    GD +      
Sbjct: 118 -KVYTRELV-PRRVDDSWDCKISAIATSGTHTAAITESGELYMWGRE--EGDGRLGLGPG 173

Query: 170 --------ISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                   +SVP +V+ L   V  ++ G F  +AL ++G LW WG N   +LG GD    
Sbjct: 174 RGPNEGGGLSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGG 233

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +P+PV  L G+ +  IA GG+HS ALT++G+V  WG G HG+L  G +   ++ VP ++
Sbjct: 234 WEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQL--GSSSLRNQKVPTEI 291

Query: 281 NLLAGEDIVQVSCGGTHSVALT 302
             LA + IV ++ GG+ S A+T
Sbjct: 292 EALADKKIVFIASGGSSSAAIT 313



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 149/331 (45%), Gaps = 46/331 (13%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-------- 61
           WG G+ G+LG G         +    E + +R +  G  +S+A+   G   T        
Sbjct: 55  WGKGDGGRLGFGQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGA 114

Query: 62  --------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG---GNEYGQCGEEP 110
                   E +P +V+   + KI   A  G H  A+ + G  Y WG   G+     G   
Sbjct: 115 LGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGR 174

Query: 111 ERKDDTGRILRRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPG 165
              +  G      + +P +  A  + V  V+ GG  ++ LT+EG +W WG         G
Sbjct: 175 GPNEGGG------LSVPSKVKALTVPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRG 228

Query: 166 DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           D      P+ V  LE V++  IA G +H+LAL E+G + +WG+  +GQLG+   + +  P
Sbjct: 229 DNLGGWEPMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVP 288

Query: 224 IPVQGLSGLTLVDIAAGGWHSTA-------LTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
             ++ L+   +V IA+GG  S A       LTD GE++ WG  +  +LG        +  
Sbjct: 289 TEIEALADKKIVFIASGGSSSAAITGWDWFLTDGGELWMWGNAKDFQLGV-PGLPEIQTT 347

Query: 277 PQKVNLLAGED------IVQVSCGGTHSVAL 301
           P +VN L  ED      ++ +S G +H++ L
Sbjct: 348 PVEVNFLTEEDECQPHKVISISIGASHALCL 378



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 152/339 (44%), Gaps = 51/339 (15%)

Query: 50  SLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGE 108
           +L    D        P +++A S++  +  + G +H  L +D  G  + WG  + G+ G 
Sbjct: 8   NLLFRSDQSFSLAQTPGRIDADSSSFRIGISCGLFHSGLTID--GDLWIWGKGDGGRLGF 65

Query: 109 EPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
             E            + +P       +  +R +A GG HSV LT +G V+TWG     G 
Sbjct: 66  GQENS----------VFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGY----GG 111

Query: 167 IKQIS--------VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNE-------Y 209
              +         VP RV      K+  IA    H  A+ E G L+ WG  E        
Sbjct: 112 FGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLG 171

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
              G  +    S P  V+ L+ + +  ++ GG+ + ALT +G+++ WG   +  LG GDN
Sbjct: 172 PGRGPNEGGGLSVPSKVKALT-VPVASVSCGGFFTMALTKEGQLWNWGANSNYELGRGDN 230

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
               +  P  V  L G  I Q++CGG HS+ALT +G + S+G G HG+LG     ++ + 
Sbjct: 231 LGGWE--PMPVPSLEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGS----SSLRN 284

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
            +VP  I A        D++ +   +A GG  + AI  W
Sbjct: 285 QKVPTEIEAL------ADKKIV--FIASGGSSSAAITGW 315


>gi|344293366|ref|XP_003418394.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Loxodonta
            africana]
          Length = 4858

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3997 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4045

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4046 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4105

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4106 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4165

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4166 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSSDGSMVWAFGDGDYGKLGLGNSTA 4223

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4224 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4253



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4044 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4078

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4079 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4130

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4131 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4179

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4180 LEGYQIGQVACGLNHTLAVSSDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4239

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4240 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4297

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4298 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4336



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 177/394 (44%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNAL------SNTKIVQAAIGGWHCLAVDDQGRA 95
            DG  +               N  S +  L      S  K+  +     H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIRKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4027 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4079

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4080 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4139

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4140 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4199

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4200 SDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4257

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4258 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4303



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4092 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4151

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV   G   +A+G  
Sbjct: 4152 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSSDGSMVWAFGDG 4211

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4212 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4263

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4264 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4323

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4324 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4356



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIRKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|452825756|gb|EME32751.1| UVB-resistance protein UVR8-like / chromatin binding /
           guanyl-nucleotide exchange factor isoform 1 [Galdieria
           sulphuraria]
          Length = 562

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 155/338 (45%), Gaps = 41/338 (12%)

Query: 38  YKVRSVVAGSRNSLAICDDGKTKT--ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA 95
           +K++ V +   NS   C  G  ++  + IP+ V  L+N K+VQ   G  H L +  +G  
Sbjct: 58  HKLQGVFSFGDNSEGCCGLGSLESSRQPIPAHVATLANKKVVQVVCGHRHVLVLTVEGEV 117

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           Y++G N+ G+CG        TG      I  P    P   +     G +    L  EG +
Sbjct: 118 YSFGSNKLGECG--------TGVASSTPIPSP---VPITTINYDERGCS----LDDEGRI 162

Query: 156 WTWGQPWPPGDIKQISVPVRVQG----LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
               +  P    K+ S+PV  +     + +V  IA G   + AL +D  ++ WG NE   
Sbjct: 163 QIINERIP----KKASIPVYTKNGNTKIRRVVFIAAGYSTSFALTDDDRVYVWGRNESAA 218

Query: 212 LGTGDTQ-PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           LG G +      P+    LSGL LV+IA+GG H  ALT  G VYGWG   +G++GF    
Sbjct: 219 LGLGISGGCVHTPVMNPYLSGLCLVEIASGGVHGLALTKQGVVYGWGGNSYGQVGFPSGS 278

Query: 271 KSSKMV--PQKVNLLAGEDIVQVSCGGTHS-VALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
            +S +V  P  +  L       +SCG   S V  T+D  +++FG   HG LG G      
Sbjct: 279 GASSIVAYPTIITSLQCTHFSHISCGKDMSFVVSTQDDEVWAFGYNAHGELGLGHTNPVP 338

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +P +V            G+  + I + +A G RH LA+
Sbjct: 339 EPQQVV-----------GLQSKGIIQ-IAAGIRHVLAL 364



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 23/256 (8%)

Query: 73  NTKI---VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
           NTKI   V  A G     A+ D  R Y WG NE    G        +G  +   ++ P  
Sbjct: 183 NTKIRRVVFIAAGYSTSFALTDDDRVYVWGRNESAALG-----LGISGGCVHTPVMNPYL 237

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWG--------QPWPPGDIKQISVPVRVQGLEQ 181
               L+  ++A+GG H + LT++G V+ WG         P   G    ++ P  +  L+ 
Sbjct: 238 SGLCLV--EIASGGVHGLALTKQGVVYGWGGNSYGQVGFPSGSGASSIVAYPTIITSLQC 295

Query: 182 VKLIAVGAFHNLAL---QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
                +    +++     +D  +WA+G N +G+LG G T P  +P  V GL    ++ IA
Sbjct: 296 THFSHISCGKDMSFVVSTQDDEVWAFGYNAHGELGLGHTNPVPEPQQVVGLQSKGIIQIA 355

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  H  AL+    VY WG   +G+LG G  + S+ +  +++++L    ++QVS     S
Sbjct: 356 AGIRHVLALSSSELVYAWGENNYGQLGDGTVENSTLI--KEIHILRNRRVIQVSVSECAS 413

Query: 299 VALTRDGHIFSFGRGD 314
            A+T    +F +G  +
Sbjct: 414 FAVTIHAELFVWGSNE 429


>gi|403369334|gb|EJY84511.1| hypothetical protein OXYTRI_17643 [Oxytricha trifallax]
          Length = 1141

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 8/215 (3%)

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTWGQPWP------PGDIKQISVPVRVQG 178
           +P+ C+  +++  +A G  H+  +  + GHV+  G             +K  +VP  V+G
Sbjct: 40  MPKICSFNIVINYIACGDEHTAFIAEQVGHVYCMGSNADGKLGIGEKTLKSSNVPCLVEG 99

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
           ++ +  +A G+ H +AL   G ++AWG   YG LG GD +   +P  +Q L    +VDIA
Sbjct: 100 IQDIVQVACGSQHTMALNRKGEIYAWGGGFYGALGLGDARMCDKPQIIQALQHERIVDIA 159

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV-PQKVNLLAGEDIVQVSCGGTH 297
           AG  HS  L ++  VYG G  + G+LG G  ++  +++ PQ +  L+G+ + +V CG  H
Sbjct: 160 AGNRHSLFLAENQRVYGCGESKAGQLGLGQGNQHDRILSPQSITALSGQGVKKVCCGKFH 219

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           S+ LT    +FS G    G+LG G +     P ++
Sbjct: 220 SLFLTHSKEVFSTGGNSFGQLGTGNQSNLYVPEKI 254



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 122/279 (43%), Gaps = 44/279 (15%)

Query: 60  KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
           K+ N+P  V  + +  IVQ A G  H +A++ +G  YAWGG  YG  G    R  D  +I
Sbjct: 89  KSSNVPCLVEGIQD--IVQVACGSQHTMALNRKGEIYAWGGGFYGALGLGDARMCDKPQI 146

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI--------KQIS 171
           +       Q    + IV  +AAG  HS+ L     V+  G+    G +         +I 
Sbjct: 147 I-------QALQHERIV-DIAAGNRHSLFLAENQRVYGCGES-KAGQLGLGQGNQHDRIL 197

Query: 172 VPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            P  +  L  + VK +  G FH+L L     +++ G N +GQLGTG+      P  ++ L
Sbjct: 198 SPQSITALSGQGVKKVCCGKFHSLFLTHSKEVFSTGGNSFGQLGTGNQSNLYVPEKIKNL 257

Query: 230 SGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           S +  +      W +S A+T+  E++ WG G  G            ++P + +    +D 
Sbjct: 258 SKVNQIS----AWQYSAAITEQDELFVWGTGIFGEY----------LIPTQQHF--PKDK 301

Query: 289 VQVS------CGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            Q S       GG+ SV +      + +G   +  +G G
Sbjct: 302 CQTSQFKSIQIGGSFSVLIDHQNKAYVWGANTNNEIGSG 340



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 40/242 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD------GKTK 60
           I AWG G  G LG+G+    +   +++AL+  ++  + AG+R+SL + ++      G++K
Sbjct: 122 IYAWGGGFYGALGLGDARMCDKPQIIQALQHERIVDIAAGNRHSLFLAENQRVYGCGESK 181

Query: 61  TENI-------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
              +             P  + ALS   + +   G +H L +      ++ GGN +GQ G
Sbjct: 182 AGQLGLGQGNQHDRILSPQSITALSGQGVKKVCCGKFHSLFLTHSKEVFSTGGNSFGQLG 241

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
                   TG   + ++ +P++      V Q++A   +S  +T +  ++ WG     G  
Sbjct: 242 --------TGN--QSNLYVPEKIKNLSKVNQISA-WQYSAAITEQDELFVWGT----GIF 286

Query: 168 KQISVPVRVQ------GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            +  +P +           Q K I +G   ++ +      + WG N   ++G+GD+QP+ 
Sbjct: 287 GEYLIPTQQHFPKDKCQTSQFKSIQIGGSFSVLIDHQNKAYVWGANTNNEIGSGDSQPKL 346

Query: 222 QP 223
            P
Sbjct: 347 YP 348



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 75/320 (23%), Positives = 131/320 (40%), Gaps = 50/320 (15%)

Query: 11  GSGEDGQLGIGNN--EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           GS  DG+LGIG    +     C+V+ ++   +  V  GS++++A+   G+          
Sbjct: 74  GSNADGKLGIGEKTLKSSNVPCLVEGIQ--DIVQVACGSQHTMALNRKGEIYAWGGGFYG 131

Query: 59  ------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                  +  + P  + AL + +IV  A G  H L + +  R Y  G ++ GQ G     
Sbjct: 132 ALGLGDARMCDKPQIIQALQHERIVDIAAGNRHSLFLAENQRVYGCGESKAGQLGLGQGN 191

Query: 113 KDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----P 161
           + D  RIL          +P+ I       V++V  G  HS+ LT    V++ G      
Sbjct: 192 QHD--RIL----------SPQSITALSGQGVKKVCCGKFHSLFLTHSKEVFSTGGNSFGQ 239

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
              G+   + VP +++ L +V  I+   + + A+ E   L+ WG   +G+       P  
Sbjct: 240 LGTGNQSNLYVPEKIKNLSKVNQISAWQY-SAAITEQDELFVWGTGIFGEY----LIPTQ 294

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           Q  P           I  GG  S  +    + Y WG   +  +G GD+    K+ P  ++
Sbjct: 295 QHFPKDKCQTSQFKSIQIGGSFSVLIDHQNKAYVWGANTNNEIGSGDS--QPKLYPTILS 352

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
            +  ++ + V  G   +  L
Sbjct: 353 CIQEKESMSVGVGNNFAFVL 372


>gi|159036719|ref|YP_001535972.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157915554|gb|ABV96981.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 553

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 155/357 (43%), Gaps = 36/357 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           +I+AWG  + GQLG G   +      V       V +V  G R+ LA+            
Sbjct: 55  TILAWGENDGGQLGNGTMIDSSEPVAVSLPAGTAVAAVAVGDRHGLALTSAGTVLAWGRN 114

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 +G T + + P  V+  + T+ V  A G  H LA+   G   AWG N +GQ G+ 
Sbjct: 115 IEGQLGNGSTTSSSTPVAVSLPTGTRAVAVAAGADHSLALTSAGTILAWGDNTFGQLGD- 173

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG-HVWTWGQ----PWPP 164
                  G    R   +         V  +AAG  H++VLT  G  + TWG+        
Sbjct: 174 -------GSTTDRSTPVAVSLPAGTTVAAIAAGRDHNLVLTSTGPTLLTWGKNTRGQLGD 226

Query: 165 GDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G       PV V     V + +V  G  H+L L  D    AWG N +GQLG G T     
Sbjct: 227 GTTTGRDTPVAVTLPPGVTVTSVAGGRDHSLVLTSDDTALAWGGNSFGQLGNGTTTDSLV 286

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           PI V   +G     IAAG  HS ALT +G  + WG    G+LG G    SS+  P  V+L
Sbjct: 287 PIAVALPTGTEATAIAAGRLHSAALTSEGAAFAWGHNGRGQLGNGSTTDSSE--PVAVSL 344

Query: 283 LAGEDIVQVSCGGT-HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            A   +  ++   + H+V +T  G   ++G   +G LG G   TT +   V +++PA
Sbjct: 345 PADTRLTAIAGRDSDHNVTITSAGAALAWGANANGELGDGS--TTDRSTPVAVSLPA 399



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 135/326 (41%), Gaps = 36/326 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + S  +++AWG   +GQLG G+         V      +  +V AG+ +SLA+       
Sbjct: 102 LTSAGTVLAWGRNIEGQLGNGSTTSSSTPVAVSLPTGTRAVAVAAGADHSLALTSAGTIL 161

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEY 103
                      DG T   + P  V+  + T +   A G  H L +   G     WG N  
Sbjct: 162 AWGDNTFGQLGDGSTTDRSTPVAVSLPAGTTVAAIAAGRDHNLVLTSTGPTLLTWGKNTR 221

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---- 159
           GQ G+        G    RD  +     P + V  VA G  HS+VLT +     WG    
Sbjct: 222 GQLGD--------GTTTGRDTPVAVTLPPGVTVTSVAGGRDHSLVLTSDDTALAWGGNSF 273

Query: 160 QPWPPGDIKQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                G      VP+ V    G E    IA G  H+ AL  +GA +AWG+N  GQLG G 
Sbjct: 274 GQLGNGTTTDSLVPIAVALPTGTEATA-IAAGRLHSAALTSEGAAFAWGHNGRGQLGNGS 332

Query: 217 TQPRSQPIPVQGLSGLTLVDIAA-GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           T   S+P+ V   +   L  IA     H+  +T  G    WG   +G L  GD   + + 
Sbjct: 333 TTDSSEPVAVSLPADTRLTAIAGRDSDHNVTITSAGAALAWGANANGEL--GDGSTTDRS 390

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVAL 301
            P  V+L AG  +  ++ G   S+AL
Sbjct: 391 TPVAVSLPAGTRVAAIAAGDDQSMAL 416


>gi|334314433|ref|XP_003340037.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Monodelphis
            domestica]
          Length = 4790

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R+++IP         +QV  G   + V+   G V
Sbjct: 3929 YLWGAGRHGQLAEA-----------GRNVMIPAAAPSFSQAQQVICGQNCTFVIQANGTV 3977

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 3978 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4037

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  ++ ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4038 GDYGKLGHGNSDRQRRPRQIEALQGEEVIQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4097

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4098 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4155

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4156 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4185



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 3976 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4010

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4011 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4062

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + VI           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4063 EEVI-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4111

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4112 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4171

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  ++ G 
Sbjct: 4172 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDIAVGA 4229

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  + I
Sbjct: 4230 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLITI 4268



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGVAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 34/312 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            IP+   + S     Q  I G +C   +   G   A G   YG+ G+     DD       
Sbjct: 3948 IPAAAPSFSQ---AQQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 3997

Query: 123  DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             + +       ++ + V + G+  HS+ LT  G V++WG         G+  +   P ++
Sbjct: 3998 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQI 4057

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +
Sbjct: 4058 EALQGEEVIQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQI 4117

Query: 235  VDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+C
Sbjct: 4118 GQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVAC 4175

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   SVALT+DGH+++FG+     L  GR     +P ++P+          GV    + +
Sbjct: 4176 GTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIE 4223

Query: 354  LVACGGRHTLAI 365
             +A G  HTLA+
Sbjct: 4224 DIAVGAEHTLAL 4235



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4024 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVIQMSCGFKHSAVVTSDGK 4083

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4084 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4143

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4144 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4195

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  IAVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4196 RLIGLPEGRARNHNRPQQIPVLAGVVIEDIAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4255

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  +  L G  +  I+AG  HS A T
Sbjct: 4256 HTNHVREPTLITILQGKNIRQISAGRCHSAAWT 4288



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|291402886|ref|XP_002718216.1| PREDICTED: hect domain and RCC1-like domain 1 [Oryctolagus cuniculus]
          Length = 4860

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4046 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4080

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4081 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4132

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4133 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4181

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4182 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4241

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V +LAG  I  V+ G 
Sbjct: 4242 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGA 4299

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4300 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4338



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3999 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4047

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4048 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4107

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4108 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4167

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4168 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4225

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4226 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4255



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4029 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4081

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4082 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4141

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4142 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4201

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4202 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4259

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P +VP+          GV    + + VA G  HTLA+
Sbjct: 4260 YTFGQDRLIGLPEGRARNHNRPQQVPVLA--------GV----VIEDVAVGAEHTLAL 4305



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4094 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4153

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4154 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4213

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4214 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4265

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4266 RLIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4325

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4326 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4358



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|431911480|gb|ELK13686.1| Putative E3 ubiquitin-protein ligase HERC5 [Pteropus alecto]
          Length = 923

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 27/229 (11%)

Query: 142 GGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK---LIAVGAFHNLALQED 198
           G  H ++L+ +G          P +        R Q + Q K    I  G +H+LAL + 
Sbjct: 4   GAEHMLILSSDG---------KPFEYNYSIEHARFQCILQEKNIIQITCGDYHSLALSKG 54

Query: 199 GALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           G L+AWG N +GQLG G      + P  V+ LSG+ L  I+AG  HS AL+  G +Y WG
Sbjct: 55  GELFAWGQNLHGQLGVGKIFDSTTAPQIVEHLSGVPLAQISAGKSHSMALSVSGNIYSWG 114

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           R + G+LG G  D   K  P  +  L  + +  ++CGG+H+  LT+DG +F+FG G +G+
Sbjct: 115 RNDFGQLGLGHTD--DKDFPSLIEALENQKVEFLACGGSHTALLTKDGLVFTFGAGKYGQ 172

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           LG+       +P  V       + AG+ V +      VACG +HTLA V
Sbjct: 173 LGHNSTQNELRPCLVT------KLAGNRVTQ------VACGRQHTLAYV 209



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 117/211 (55%), Gaps = 12/211 (5%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI-KQISVPVRVQGLEQVKL--IAVG 188
           + Q+  G  HS+ L++ G ++ WGQ        G I    + P  V+ L  V L  I+ G
Sbjct: 38  IIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGKIFDSTTAPQIVEHLSGVPLAQISAG 97

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H++AL   G +++WG N++GQLG G T  +  P  ++ L    +  +A GG H+  LT
Sbjct: 98  KSHSMALSVSGNIYSWGRNDFGQLGLGHTDDKDFPSLIEALENQKVEFLACGGSHTALLT 157

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHI 307
            DG V+ +G G++G+L  G N   +++ P  V  LAG  + QV+CG  H++A   D G +
Sbjct: 158 KDGLVFTFGAGKYGQL--GHNSTQNELRPCLVTKLAGNRVTQVACGRQHTLAYVSDLGKV 215

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           FSFG G+ G+LG G   T  Q + +P+ +P+
Sbjct: 216 FSFGSGEEGQLGNGG--THNQLIPLPMKLPS 244



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 42/265 (15%)

Query: 46  GSRNSLAICDDGKTKTENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           G+ + L +  DGK    N   +       L    I+Q   G +H LA+   G  +AWG N
Sbjct: 4   GAEHMLILSSDGKPFEYNYSIEHARFQCILQEKNIIQITCGDYHSLALSKGGELFAWGQN 63

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGH 154
            +GQ G         G+I           AP+++       + Q++AG +HS+ L+  G+
Sbjct: 64  LHGQLG--------VGKIF------DSTTAPQIVEHLSGVPLAQISAGKSHSMALSVSGN 109

Query: 155 VWTWGQPWPPGDIKQI--------SVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAW 204
           +++WG+     D  Q+          P  ++ LE  +V+ +A G  H   L +DG ++ +
Sbjct: 110 IYSWGR----NDFGQLGLGHTDDKDFPSLIEALENQKVEFLACGGSHTALLTKDGLVFTF 165

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRGEHGR 263
           G  +YGQLG   TQ   +P  V  L+G  +  +A G  H+ A   D G+V+ +G GE G+
Sbjct: 166 GAGKYGQLGHNSTQNELRPCLVTKLAGNRVTQVACGRQHTLAYVSDLGKVFSFGSGEEGQ 225

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDI 288
           LG G     ++++P  + L + E++
Sbjct: 226 LGNGGT--HNQLIPLPMKLPSNEEL 248



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  + GQLG+G+ +++++  +++ALE  KV  +  G  ++  +  DG   
Sbjct: 104 LSVSGNIYSWGRNDFGQLGLGHTDDKDFPSLIEALENQKVEFLACGGSHTALLTKDGLVF 163

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G  H LA V D G+ +++G  E 
Sbjct: 164 TFGAGKYGQLGHNSTQNELRPCLVTKLAGNRVTQVACGRQHTLAYVSDLGKVFSFGSGEE 223

Query: 104 GQCG 107
           GQ G
Sbjct: 224 GQLG 227



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 26/171 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G   +      +V+ L    +  + AG  +S+A+   G        
Sbjct: 57  LFAWGQNLHGQLGVGKIFDSTTAPQIVEHLSGVPLAQISAGKSHSMALSVSGNIYSWGRN 116

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T  ++ PS + AL N K+   A GG H   +   G  + +G  +YGQ G  
Sbjct: 117 DFGQLGLGHTDDKDFPSLIEALENQKVEFLACGGSHTALLTKDGLVFTFGAGKYGQLGHN 176

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTWG 159
             + +       R  ++ +    +  V QVA G  H++    + G V+++G
Sbjct: 177 STQNE------LRPCLVTKLAGNR--VTQVACGRQHTLAYVSDLGKVFSFG 219


>gi|281347310|gb|EFB22894.1| hypothetical protein PANDA_002155 [Ailuropoda melanoleuca]
          Length = 4871

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4009 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4057

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4058 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4117

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4118 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4177

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4178 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4235

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4236 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4265



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4056 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4090

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4091 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4142

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4143 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4191

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4192 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4251

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4252 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4309

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4310 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4348



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  V+ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4039 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4091

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4092 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4151

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4152 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4211

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4212 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4269

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4270 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4315



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4104 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4163

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4164 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4223

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4224 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4275

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4276 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4335

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4336 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4368



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  V+ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|417407153|gb|JAA50201.1| Putative e3 ubiquitin-protein ligase herc1 [Desmodus rotundus]
          Length = 4846

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3985 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4033

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4034 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4093

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4094 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4153

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF-SFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG +  +FG GD+G+LG G    
Sbjct: 4154 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSVVWAFGDGDYGKLGLGNSTA 4211

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4212 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4241



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4032 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4066

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4067 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4118

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4119 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4167

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4168 LEGYQIGQVACGLNHTLAVSADGSVVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4227

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4228 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4285

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4286 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4324



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4015 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4067

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4068 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4127

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4128 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4187

Query: 249  DDGEV-YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V + +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4188 ADGSVVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4245

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4246 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4291



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S +LT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLSLTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4080 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4139

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV   G   +A+G  
Sbjct: 4140 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSVVWAFGDG 4199

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4200 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4251

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4252 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4311

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4312 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4344



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLSLTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|301756863|ref|XP_002914279.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
            [Ailuropoda melanoleuca]
          Length = 4861

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4301 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4339



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  V+ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4306



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4359



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  V+ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|402874534|ref|XP_003901090.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Papio
            anubis]
          Length = 3314

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 2500 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 2534

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 2535 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 2586

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 2587 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 2635

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 2636 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 2695

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 2696 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 2753

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 2754 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 2790



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 2453 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 2501

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 2502 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 2561

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 2562 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 2621

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 2622 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 2679

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 2680 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 2709



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 2483 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 2535

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 2536 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 2595

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 2596 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 2655

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 2656 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 2713

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 2714 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 2759



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 2548 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 2607

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 2608 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 2667

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 2668 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 2719

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 2720 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 2779

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 2780 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 2812


>gi|380788265|gb|AFE66008.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
          Length = 4861

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4301 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4337



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4306



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4359



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|156406658|ref|XP_001641162.1| predicted protein [Nematostella vectensis]
 gi|156228299|gb|EDO49099.1| predicted protein [Nematostella vectensis]
          Length = 596

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 151/329 (45%), Gaps = 40/329 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G+   E  P  V AL    I + A G  H LA+   G  ++WG    G+ G+        
Sbjct: 223 GEDTQEAHPHVVEALLGKDIRKVACGATHTLALSKDGEVFSWGSGYGGRLGQ-------- 274

Query: 117 GRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVL---TREGHVWT-----WGQPWPPGD 166
           G +  RD   P R      L + QVA    HS  +   +++G +++     +GQ   P D
Sbjct: 275 GHL--RDRFTPIRICGLESLNLTQVACNEFHSAAVCACSKQGALFSFGENDYGQLGIPED 332

Query: 167 IKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
               S    V  L + K+  +A G+FH+ AL E G+LW WG NE GQLG G+    S P 
Sbjct: 333 KLLTSYIQCVSSLSEHKISRVACGSFHSAALAEHGSLWLWGCNESGQLGNGNYTSTSLPS 392

Query: 225 PVQGLSGL---TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGDN--DKSSKMVP 277
            ++  + L    ++++A G  HS  +T  G ++  G   +G+LG    DN  D  +  V 
Sbjct: 393 LLEAGNDLRHDAVMEVACGDQHSAFITKKGRMFCCGDNTYGQLGAHLNDNQDDHVTYNVA 452

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            +V +      V V+CG +H+  +T  G IF++GRG  GRLG+G  +    P E+ I + 
Sbjct: 453 VRVRVPTDFRCVHVACGDSHTAVVTDGGEIFTWGRGKGGRLGHGDNLNRHLPTEIEIGME 512

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                G           V+CG  HT   V
Sbjct: 513 GKHVRG-----------VSCGRAHTACTV 530



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 50/332 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           I  WG G +G LG G + +     VV+AL    +R V  G+ ++LA+  DG+        
Sbjct: 209 IYTWGEGTNGMLGHGEDTQEAHPHVVEALLGKDIRKVACGATHTLALSKDGEVFSWGSGY 268

Query: 60  ---------KTENIPSQVNALSNTKIVQAAIGGWHCLAV---DDQGRAYAWGGNEYGQCG 107
                    +    P ++  L +  + Q A   +H  AV     QG  +++G N+YGQ G
Sbjct: 269 GGRLGQGHLRDRFTPIRICGLESLNLTQVACNEFHSAAVCACSKQGALFSFGENDYGQLG 328

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
             PE K  T  I         +C   L    + +VA G  HS  L   G +W WG     
Sbjct: 329 I-PEDKLLTSYI---------QCVSSLSEHKISRVACGSFHSAALAEHGSLWLWGCNESG 378

Query: 164 ---PGDIKQISVPVRVQG-----LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT- 214
               G+    S+P  ++       + V  +A G  H+  + + G ++  G+N YGQLG  
Sbjct: 379 QLGNGNYTSTSLPSLLEAGNDLRHDAVMEVACGDQHSAFITKKGRMFCCGDNTYGQLGAH 438

Query: 215 -----GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
                 D    +  + V+  +    V +A G  H+  +TD GE++ WGRG+ GRLG GDN
Sbjct: 439 LNDNQDDHVTYNVAVRVRVPTDFRCVHVACGDSHTAVVTDGGEIFTWGRGKGGRLGHGDN 498

Query: 270 DKSSKMVPQKVNL-LAGEDIVQVSCGGTHSVA 300
              ++ +P ++ + + G+ +  VSCG  H+  
Sbjct: 499 --LNRHLPTEIEIGMEGKHVRGVSCGRAHTAC 528



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 19/222 (8%)

Query: 155 VWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           ++TWG+        G+  Q + P  V+ L  + ++ +A GA H LAL +DG +++WG+  
Sbjct: 209 IYTWGEGTNGMLGHGEDTQEAHPHVVEALLGKDIRKVACGATHTLALSKDGEVFSWGSGY 268

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL---TDDGEVYGWGRGEHGRLG 265
            G+LG G  + R  PI + GL  L L  +A   +HS A+   +  G ++ +G  ++G+LG
Sbjct: 269 GGRLGQGHLRDRFTPIRICGLESLNLTQVACNEFHSAAVCACSKQGALFSFGENDYGQLG 328

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             + DK      Q V+ L+   I +V+CG  HS AL   G ++ +G  + G+LG G   +
Sbjct: 329 IPE-DKLLTSYIQCVSSLSEHKISRVACGSFHSAALAEHGSLWLWGCNESGQLGNGNYTS 387

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           T        ++P+   AG+ +    + + VACG +H+  I +
Sbjct: 388 T--------SLPSLLEAGNDLRHDAVME-VACGDQHSAFITK 420



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 33/261 (12%)

Query: 126 IPQ-RCAPKLIVRQVAAGGTHSVVLT----REGHVWTWGQPWPPGDIKQISVPVRV---- 176
           +PQ  C    I+ +V  G   S+ +     RE  +WT G          I    +V    
Sbjct: 119 VPQYECLSFSIMYKVNNGPIRSLDIVCKSRREFDIWTCGIQALLSGFSDIQAMNKVDFED 178

Query: 177 ------QGLEQVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
                  G  +V+   +G    + ++ED   ++ WG    G LG G+    + P  V+ L
Sbjct: 179 SQDQTDSGTVEVEFGLLGQ-ATVHVKEDACDIYTWGEGTNGMLGHGEDTQEAHPHVVEAL 237

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            G  +  +A G  H+ AL+ DGEV+ WG G  GRLG G      +  P ++  L   ++ 
Sbjct: 238 LGKDIRKVACGATHTLALSKDGEVFSWGSGYGGRLGQG--HLRDRFTPIRICGLESLNLT 295

Query: 290 QVSCGGTHSVAL---TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
           QV+C   HS A+   ++ G +FSFG  D+G+LG          ++   ++   +     +
Sbjct: 296 QVACNEFHSAAVCACSKQGALFSFGENDYGQLGIPEDKLLTSYIQCVSSLSEHK-----I 350

Query: 347 DRRWIAKLVACGGRHTLAIVE 367
            R      VACG  H+ A+ E
Sbjct: 351 SR------VACGSFHSAALAE 365



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 41/163 (25%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A   S+  WG  E GQLG GN                                      
Sbjct: 363 LAEHGSLWLWGCNESGQLGNGN------------------------------------YT 386

Query: 61  TENIPSQV---NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
           + ++PS +   N L +  +++ A G  H   +  +GR +  G N YGQ G      D+  
Sbjct: 387 STSLPSLLEAGNDLRHDAVMEVACGDQHSAFITKKGRMFCCGDNTYGQLG--AHLNDNQD 444

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
             +  ++ +  R         VA G +H+ V+T  G ++TWG+
Sbjct: 445 DHVTYNVAVRVRVPTDFRCVHVACGDSHTAVVTDGGEIFTWGR 487


>gi|410961060|ref|XP_003987103.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1 [Felis catus]
          Length = 4861

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4301 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4339



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  V+ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4306



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4359



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  V+ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|403298208|ref|XP_003939923.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Saimiri
            boliviensis boliviensis]
          Length = 4860

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3999 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4047

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4048 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4107

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4108 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4167

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF-SFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG +  +FG GD+G+LG G    
Sbjct: 4168 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSVVWAFGDGDYGKLGLGNSTA 4225

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4226 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4255



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4046 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4080

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4081 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4132

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4133 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4181

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4182 LEGYQIGQVACGLNHTLAVSADGSVVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4241

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4242 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4299

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4300 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4336



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4029 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4081

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4082 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4141

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4142 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4201

Query: 249  DDGEV-YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V + +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4202 ADGSVVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4259

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4260 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4305



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4094 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4153

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV   G   +A+G  
Sbjct: 4154 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSVVWAFGDG 4213

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4214 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4265

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4266 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4325

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4326 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4358



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|297814848|ref|XP_002875307.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297321145|gb|EFH51566.1| regulator of chromosome condensation family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 533

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 170/367 (46%), Gaps = 61/367 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S   +  +G    GQLG G+ EE+  +  V++L+  ++    AG+  ++ I DDGK  
Sbjct: 159 VTSKGEVYTFGYNNSGQLGHGHTEEQARIQPVRSLQGIRIIQAAAGAARTMLISDDGKVY 218

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           T+    P  V +L N  +VQAAIG +    +  +G+ Y +    
Sbjct: 219 ACGKESFGEAEYGGQGTQPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGN 278

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT------------ 150
            G+ G + E  D    +  R ++ P    P   V Q+AAG  + + L             
Sbjct: 279 DGRLGHQTEAAD----VEPRPLLGPLENVP---VVQIAAGYCYLLALACQPNGMSVYSVG 331

Query: 151 -----REGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
                + GH     + +P     ++    ++  L Q +++A GA+H   + +DG +  WG
Sbjct: 332 CGLGGKLGHGSRTDEKYP-----RVIEQFKILNL-QPRVVAAGAWHAAVVGQDGRVCTWG 385

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
              YG LG G+ +  S P  V+GL+ +  V +A G + +  ++DDG+VY +G GE   LG
Sbjct: 386 WGRYGCLGHGNEECESVPKVVEGLNHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLG 445

Query: 266 ----FGD--NDKSSKMVPQKVNLL--AGEDIVQVSCGGT-----HSVALTRDGHIFSFGR 312
               F +  N  ++ + P  V  L  A E +VQ+S   +     H+ ALT  G +++FG 
Sbjct: 446 HHPSFDEQGNRHANVLSPAVVTSLKQANERVVQISLTNSIYWNAHTFALTESGKLYAFGA 505

Query: 313 GDHGRLG 319
           GD G+LG
Sbjct: 506 GDQGQLG 512



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 42/287 (14%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA-----WGGNEYGQCGEEPE 111
           G T+ +     V +L   +I+QAA G    + + D G+ YA     +G  EYG  G +P 
Sbjct: 179 GHTEEQARIQPVRSLQGIRIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTQP- 237

Query: 112 RKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTW--------GQP 161
                       +  PQ       + V Q A G   + VL+REG V+T+        G  
Sbjct: 238 ------------VTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQ 285

Query: 162 WPPGDIKQISVPVRVQG-LEQVKLIAVGA----FHNLALQEDG-ALWAWGNNEYGQLGTG 215
               D++    P  + G LE V ++ + A       LA Q +G ++++ G    G+LG G
Sbjct: 286 TEAADVE----PRPLLGPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHG 341

Query: 216 DTQPRSQPIPVQGLSGLTLVD--IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
                  P  ++    L L    +AAG WH+  +  DG V  WG G +G LG G+ +  S
Sbjct: 342 SRTDEKYPRVIEQFKILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 401

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
             VP+ V  L     V V+ G   +  ++ DG ++SFG G+   LG+
Sbjct: 402 --VPKVVEGLNHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGH 446



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 75/139 (53%)

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H++A+   G ++ +G N  GQLG G T+ +++  PV+ L G+ ++  AAG   +  ++DD
Sbjct: 155 HSIAVTSKGEVYTFGYNNSGQLGHGHTEEQARIQPVRSLQGIRIIQAAAGAARTMLISDD 214

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+VY  G+   G   +G         PQ V  L    +VQ + G   +  L+R+G +++F
Sbjct: 215 GKVYACGKESFGEAEYGGQGTQPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTF 274

Query: 311 GRGDHGRLGYGRKVTTGQP 329
             G+ GRLG+  +    +P
Sbjct: 275 SWGNDGRLGHQTEAADVEP 293



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 26/270 (9%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           QA  G  H +AV  +G  Y +G N  GQ G         G    +  + P R    + + 
Sbjct: 148 QAVAGPGHSIAVTSKGEVYTFGYNNSGQLGH--------GHTEEQARIQPVRSLQGIRII 199

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLI--AVGA 189
           Q AAG   +++++ +G V+  G+       +     + ++ P  V  L+ + ++  A+G 
Sbjct: 200 QAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTQPVTTPQLVTSLKNIFVVQAAIGN 259

Query: 190 FHNLALQEDGALW--AWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTA 246
           +    L  +G ++  +WGN+  G+LG        +P P+ G L  + +V IAAG  +  A
Sbjct: 260 YFTAVLSREGKVYTFSWGND--GRLGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLA 317

Query: 247 LT---DDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           L    +   VY  G G  G+LG G   D+    V ++  +L  +  V V+ G  H+  + 
Sbjct: 318 LACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFKILNLQPRV-VAAGAWHAAVVG 376

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +DG + ++G G +G LG+G +     P  V
Sbjct: 377 QDGRVCTWGWGRYGCLGHGNEECESVPKVV 406



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  HS A+T  GEVY +G    G+LG G  ++ +++ P  V  L G  I+Q + G   +
Sbjct: 151 AGPGHSIAVTSKGEVYTFGYNNSGQLGHGHTEEQARIQP--VRSLQGIRIIQAAAGAART 208

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           + ++ DG +++ G+   G   YG + T  QP+  P  + + +N
Sbjct: 209 MLISDDGKVYACGKESFGEAEYGGQGT--QPVTTPQLVTSLKN 249


>gi|147920282|ref|YP_685948.1| regulator of chromosome condensation [Methanocella arvoryzae MRE50]
 gi|110621344|emb|CAJ36622.1| predicted regulator of chromosome condensation [Methanocella
           arvoryzae MRE50]
          Length = 451

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 163/338 (48%), Gaps = 41/338 (12%)

Query: 28  WVCVVKALEPYKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSN-TKIVQAA 80
           +V ++ A    KV S+ A +  S+A+ D+G       T+     S    L + T I  A+
Sbjct: 22  FVILMPATAFSKVVSIDAQADVSVALNDNGTVFMWGDTRDGTFRSDEPVLVDITNITAAS 81

Query: 81  IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA 140
            G ++ L + D G  +A G NEYGQ G+        G  +     +  +C  +++   ++
Sbjct: 82  AGVFNALFLKDDGTVWAIGDNEYGQLGD--------GTRVDSSKAVQVQCLSEVV--AIS 131

Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISV------PVRVQGLEQVKLIAVGAFHNLA 194
           AG  H++ L R+G VW WG     G I   +V      PV+V GL  VK I+ G   + A
Sbjct: 132 AGDCHNLALKRDGTVWAWGCNLF-GQIGNDNVGHDELTPVQVPGLSGVKEISAGYMGSKA 190

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           +  DG +WAWG NEYGQ+G G  + RS P+ +  ++ ++ +D    G  S AL  DG V+
Sbjct: 191 ITGDGTVWAWGINEYGQIGDGTKEIRSLPVRIS-INNVSAIDTGEYG-TSIALKSDGSVW 248

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE-----------DIVQVSCGGTHSVALTR 303
            WG    G+LG    D  S M+P  V+ L  E           ++  VS G  +S+A+  
Sbjct: 249 TWGNNGQGQLGDPAEDTLSMMLP--VSNLGSERLVPGKTGGLYNVTSVSAGARNSLAVKD 306

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           DG ++ +G    GR G G K   G+    P+ +P   N
Sbjct: 307 DGTLWVWGENQEGRFGNGLKF--GRDSIRPVIVPGLNN 342



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 167/364 (45%), Gaps = 64/364 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++  WG   DG          E V V    +   + +  AG  N+L + DDG        
Sbjct: 52  TVFMWGDTRDGTF-----RSDEPVLV----DITNITAASAGVFNALFLKDDGTVWAIGDN 102

Query: 59  --------TKTENIPS-QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+ ++  + QV  LS  ++V  + G  H LA+   G  +AWG N +GQ G  
Sbjct: 103 EYGQLGDGTRVDSSKAVQVQCLS--EVVAISAGDCHNLALKRDGTVWAWGCNLFGQIG-- 158

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGD- 166
               D+ G     D + P +      V++++AG   S  +T +G VW WG  +    GD 
Sbjct: 159 ---NDNVGH----DELTPVQVPGLSGVKEISAGYMGSKAITGDGTVWAWGINEYGQIGDG 211

Query: 167 IKQI-SVPVRVQGLEQVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            K+I S+PVR+  +  V  I  G +  ++AL+ DG++W WGNN  GQLG       S  +
Sbjct: 212 TKEIRSLPVRIS-INNVSAIDTGEYGTSIALKSDGSVWTWGNNGQGQLGDPAEDTLSMML 270

Query: 225 PVQGLSGLTLV-----------DIAAGGWHSTALTDDGEVYGWGRGEHGRLG----FGDN 269
           PV  L    LV            ++AG  +S A+ DDG ++ WG  + GR G    FG +
Sbjct: 271 PVSNLGSERLVPGKTGGLYNVTSVSAGARNSLAVKDDGTLWVWGENQEGRFGNGLKFGRD 330

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG-RKVTTGQ 328
                +VP   N      IV V  G ++ +AL+ DG ++ +G+   G +G G R  T  +
Sbjct: 331 SIRPVIVPGLNN------IVSVKAGASYMLALSDDGTVYGWGKNIFGAVGNGERSETVVK 384

Query: 329 PMEV 332
           P+ V
Sbjct: 385 PLIV 388



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 56/137 (40%), Gaps = 31/137 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVRSVVAGSRN 49
           + S  S+  WG+   GQLG    +    +  V  L             Y V SV AG+RN
Sbjct: 241 LKSDGSVWTWGNNGQGQLGDPAEDTLSMMLPVSNLGSERLVPGKTGGLYNVTSVSAGARN 300

Query: 50  SLAICDDG-----------------KTKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDD 91
           SLA+ DDG                 K   ++I P  V  L+N  IV    G  + LA+ D
Sbjct: 301 SLAVKDDGTLWVWGENQEGRFGNGLKFGRDSIRPVIVPGLNN--IVSVKAGASYMLALSD 358

Query: 92  QGRAYAWGGNEYGQCGE 108
            G  Y WG N +G  G 
Sbjct: 359 DGTVYGWGKNIFGAVGN 375


>gi|355778100|gb|EHH63136.1| hypothetical protein EGM_16043 [Macaca fascicularis]
          Length = 4862

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4301 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4337



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4306



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTGLQGKNIRQISAGRCHSAAWT 4359



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|257196144|ref|NP_663592.3| hect domain and RCC1-like domain 1 [Mus musculus]
          Length = 4859

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3998 YLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTV 4046

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4047 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4106

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4107 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4166

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4167 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4224

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4225 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4254



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4045 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4079

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4080 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4131

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4132 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4180

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4181 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4240

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4241 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4298

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4299 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4337



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H ++L+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4028 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4080

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4081 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4140

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4141 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4200

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4201 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4258

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4259 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4304



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H L+L  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4093 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4152

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4153 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4212

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4213 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4264

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4265 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4324

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4325 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4357



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  +L+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|345795045|ref|XP_544717.3| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase
            HERC1 isoform 1 [Canis lupus familiaris]
          Length = 4861

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4301 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4339



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4306



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 178/388 (45%), Gaps = 47/388 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ T  +  WGS    QL  G  E+   +    AL     +++ AG   +  I  DG  +
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQEK--ILQPKMALSFSDAQTIEAGQYCTFVISTDGSVR 425

Query: 61  T-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRAYAWGGN 101
                          N  S +  L+     + K V ++ G   H LA   +G  ++WG  
Sbjct: 426 ACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWGDG 485

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
           +YG+ G          ++++  +          +V  V+AG  HS  +T +G ++TWG+ 
Sbjct: 486 DYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGELYTWGEG 538

Query: 161 ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGD 216
                  GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G+LG GD
Sbjct: 539 DFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGD 598

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T    +P  V+ L G+ +  + AG   S ALT  G+VY WG G    LG G ++ ++ + 
Sbjct: 599 TNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE-ATALR 655

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P+ +  LA   IV +S G +  +AL  D  ++++G    G+ G G   +TG     PI  
Sbjct: 656 PKLIEELAATRIVDISIGDSXCLALRHDNEVYAWGNNSMGQCGQGN--STG-----PITK 708

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           P   +  DG+  + I    + G  H+LA
Sbjct: 709 PKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G    LAL+ D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSXCLALRHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4359



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 155/339 (45%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  V+ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVVEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G     AL  D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSXCLALRHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|383422563|gb|AFH34495.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
          Length = 4846

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4032 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4066

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4067 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4118

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4119 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4167

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4168 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4227

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4228 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4285

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4286 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4322



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3985 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4033

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4034 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4093

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4094 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4153

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4154 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4211

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4212 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4241



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4015 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4067

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4068 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4127

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4128 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4187

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4188 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4245

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4246 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4291



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4080 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4139

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4140 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4199

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4200 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4251

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4252 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4311

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4312 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4344



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|380817672|gb|AFE80710.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
          Length = 4854

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4040 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4074

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4075 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4126

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4127 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4175

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4176 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4235

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4236 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4293

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4294 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4330



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3993 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4041

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4042 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4101

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4102 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4161

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4162 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4219

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4220 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4249



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4023 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4075

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4076 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4135

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4136 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4195

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4196 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4253

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4254 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4299



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4088 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4147

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4148 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4207

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4208 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4259

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4260 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4319

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4320 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4352



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|383422561|gb|AFH34494.1| putative E3 ubiquitin-protein ligase HERC1 [Macaca mulatta]
          Length = 4853

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4039 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4073

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4074 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4125

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4126 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4174

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4175 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4234

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4235 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4292

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4293 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4329



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3992 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4040

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4041 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4100

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4101 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4160

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4161 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4218

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4219 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4248



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4022 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4074

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4075 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4134

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4135 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4194

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4195 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4252

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4253 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4298



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4087 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4146

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4147 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4206

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4207 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4258

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4259 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4318

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4319 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4351



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|395502621|ref|XP_003755677.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Sarcophilus
            harrisii]
          Length = 4865

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R+++IP         +QV  G   + V+   G V
Sbjct: 4004 YLWGAGRHGQLAEA-----------GRNVMIPAAAPSFSQAQQVICGQNCTFVIQANGTV 4052

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4053 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4112

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  ++ ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4113 GDYGKLGHGNSDRQRRPRQIEALQGEEVIQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4172

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4173 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4230

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4231 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4260



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4051 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4085

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4086 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4137

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + VI           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4138 EEVI-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4186

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4187 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4246

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4247 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4304

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  + +
Sbjct: 4305 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLITV 4343



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  ++ +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVSEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGVAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 157/312 (50%), Gaps = 34/312 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            IP+   + S     Q  I G +C   +   G   A G   YG+ G+     DD       
Sbjct: 4023 IPAAAPSFSQ---AQQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 4072

Query: 123  DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             + +       ++ + V + G+  HS+ LT  G V++WG         G+  +   P ++
Sbjct: 4073 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQI 4132

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +
Sbjct: 4133 EALQGEEVIQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQI 4192

Query: 235  VDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+C
Sbjct: 4193 GQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVAC 4250

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   SVALT+DGH+++FG+     L  GR     +P ++P+          GV    + +
Sbjct: 4251 GTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIE 4298

Query: 354  LVACGGRHTLAI 365
             VA G  HTLA+
Sbjct: 4299 DVAVGAEHTLAL 4310



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4099 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVIQMSCGFKHSAVVTSDGK 4158

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4159 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4218

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4219 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4270

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4271 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4330

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  +  L G  +  I+AG  HS A T
Sbjct: 4331 HTNHVREPTLITVLQGKNIRQISAGRCHSAAWT 4363



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|148694174|gb|EDL26121.1| mCG130390 [Mus musculus]
          Length = 4870

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4009 YLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTV 4057

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4058 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4117

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4118 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4177

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4178 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4235

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4236 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4265



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4056 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4090

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4091 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4142

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4143 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4191

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4192 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4251

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4252 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4309

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4310 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4348



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H ++L+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4039 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4091

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4092 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4151

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4152 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4211

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4212 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4269

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4270 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4315



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H L+L  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4104 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4163

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4164 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4223

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4224 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4275

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4276 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4335

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4336 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4368



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  +L+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|392350138|ref|XP_236362.6| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Rattus
            norvegicus]
          Length = 4859

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3998 YLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTV 4046

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4047 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4106

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4107 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4166

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4167 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4224

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4225 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4254



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4045 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4079

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4080 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4131

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4132 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4180

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4181 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4240

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4241 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4298

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4299 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4337



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H ++L+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4028 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4080

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4081 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4140

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4141 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4200

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4201 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4258

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4259 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4304



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H L+L  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4093 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4152

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4153 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4212

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4213 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4264

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4265 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4324

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4325 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4357



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  +L+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|350578534|ref|XP_001927286.4| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Sus scrofa]
          Length = 4859

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3998 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4046

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4047 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4106

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4107 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4166

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4167 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4224

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4225 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4254



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4045 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4079

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4080 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4131

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4132 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4180

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4181 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4240

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4241 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4298

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4299 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4337



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4028 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4080

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4081 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4140

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4141 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4200

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4201 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4258

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4259 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4304



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4093 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4152

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4153 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4212

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4213 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4264

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4265 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4324

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4325 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4357



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|327261091|ref|XP_003215365.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Anolis
           carolinensis]
          Length = 530

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 23/238 (9%)

Query: 136 VRQVAAG-GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAV 187
           +R ++ G G H V+ T +G V+ WG         G   Q   P++V     +++V  +A 
Sbjct: 75  IRSLSYGSGPHVVLSTEDGEVYAWGHNGYSQLGNGTTNQGVTPIQVCTNLLIKKVIEVAC 134

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTA 246
           G+ H+LAL  DG ++AWG N  GQ+G+G T  +  P  V   L    +V IA G   S A
Sbjct: 135 GSHHSLALSSDGDVYAWGYNNCGQVGSGSTANQPTPRKVSNCLQTKIVVSIACGQTSSVA 194

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D+GEVYGWG   +G+LG G+N   +++ P +V  L G  I+Q++CG  H++ALT +G 
Sbjct: 195 IVDNGEVYGWGYNGNGQLGLGNN--GNQLTPCRVAALQGVCIMQIACGYAHTLALTDEGL 252

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           ++S+G   +G+LG G K     P ++ +            ++  + ++ AC   HT A
Sbjct: 253 MYSWGANTYGQLGTGNKSNQLSPGQILM------------EKERVVEIAACHSAHTSA 298



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 137/266 (51%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ +LS  +I   + G G H +   + G  YAWG N Y Q G     +  
Sbjct: 56  GDNQSTIVPKKLESLSGKRIRSLSYGSGPHVVLSTEDGEVYAWGHNGYSQLGNGTTNQGV 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T   +  +++I +       V +VA G  HS+ L+ +G V+ WG         G      
Sbjct: 116 TPIQVCTNLLIKK-------VIEVACGSHHSLALSSDGDVYAWGYNNCGQVGSGSTANQP 168

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P +V    Q K+   IA G   ++A+ ++G ++ WG N  GQLG G+   +  P  V  
Sbjct: 169 TPRKVSNCLQTKIVVSIACGQTSSVAIVDNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA 228

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L G+ ++ IA G  H+ ALTD+G +Y WG   +G+LG G  +KS+++ P ++ L+  E +
Sbjct: 229 LQGVCIMQIACGYAHTLALTDEGLMYSWGANTYGQLGTG--NKSNQLSPGQI-LMEKERV 285

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C   H S A T+ G ++ +G+
Sbjct: 286 VEIAACHSAHTSAAKTQSGLVYMWGQ 311



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 29/265 (10%)

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDI 167
           D G+     ++ PQ  A    +R+    GT    ++ +T    V+ +G         GD 
Sbjct: 2   DVGKWPIFTLLSPQEIAT---IRKACVFGTSANEAIYITHNDEVFVFGLNCSNCLGTGDN 58

Query: 168 KQISVPVRVQGL--EQVKLIAVGAFHNLALQ-EDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   VP +++ L  ++++ ++ G+  ++ L  EDG ++AWG+N Y QLG G T     PI
Sbjct: 59  QSTIVPKKLESLSGKRIRSLSYGSGPHVVLSTEDGEVYAWGHNGYSQLGNGTTNQGVTPI 118

Query: 225 PV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NL 282
            V   L    ++++A G  HS AL+ DG+VY WG    G++G G    +++  P+KV N 
Sbjct: 119 QVCTNLLIKKVIEVACGSHHSLALSSDGDVYAWGYNNCGQVGSGST--ANQPTPRKVSNC 176

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L  + +V ++CG T SVA+  +G ++ +G   +G+LG G       P  V         A
Sbjct: 177 LQTKIVVSIACGQTSSVAIVDNGEVYGWGYNGNGQLGLGNNGNQLTPCRVA--------A 228

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
             GV        +ACG  HTLA+ +
Sbjct: 229 LQGV----CIMQIACGYAHTLALTD 249



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 34/182 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDD 56
           ++S   + AWG    GQ+G G+       R+   V   L+   V S+  G  +S+AI D+
Sbjct: 142 LSSDGDVYAWGYNNCGQVGSGSTANQPTPRK---VSNCLQTKIVVSIACGQTSSVAIVDN 198

Query: 57  GKTK----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G+                   +  P +V AL    I+Q A G  H LA+ D+G  Y+WG 
Sbjct: 199 GEVYGWGYNGNGQLGLGNNGNQLTPCRVAALQGVCIMQIACGYAHTLALTDEGLMYSWGA 258

Query: 101 NEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTW 158
           N YGQ G      +   G+IL            + +V   A    H S   T+ G V+ W
Sbjct: 259 NTYGQLGTGNKSNQLSPGQILME---------KERVVEIAACHSAHTSAAKTQSGLVYMW 309

Query: 159 GQ 160
           GQ
Sbjct: 310 GQ 311



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 102/274 (37%), Gaps = 79/274 (28%)

Query: 7   IIAWGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           + AWG     QLG G  N+    + V   L   KV  V  GS +SLA+  D         
Sbjct: 95  VYAWGHNGYSQLGNGTTNQGVTPIQVCTNLLIKKVIEVACGSHHSLALSSDGDVYAWGYN 154

Query: 57  -------GKTKTENIPSQVNALSNTKIVQA-AIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                  G T  +  P +V+    TKIV + A G    +A+ D G  Y WG N  GQ G 
Sbjct: 155 NCGQVGSGSTANQPTPRKVSNCLQTKIVVSIACGQTSSVAIVDNGEVYGWGYNGNGQLG- 213

Query: 109 EPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
                 + G  L      P R A    + + Q+A G  H++ LT EG +++WG       
Sbjct: 214 ----LGNNGNQLT-----PCRVAALQGVCIMQIACGYAHTLALTDEGLMYSWGA------ 258

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
                                                   N YGQLGTG+   +  P  +
Sbjct: 259 ----------------------------------------NTYGQLGTGNKSNQLSPGQI 278

Query: 227 QGLSGLTLVDIAA--GGWHSTALTDDGEVYGWGR 258
             +    +V+IAA      S A T  G VY WG+
Sbjct: 279 L-MEKERVVEIAACHSAHTSAAKTQSGLVYMWGQ 311


>gi|426233168|ref|XP_004010589.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Ovis aries]
          Length = 4856

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3995 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4043

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4044 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4103

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4104 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4163

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4164 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4221

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4222 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4251



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4042 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4076

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4077 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4128

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4129 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4177

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4178 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4237

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4238 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4295

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4296 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4334



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4025 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4077

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4078 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4137

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4138 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4197

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4198 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4255

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4256 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4301



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4090 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4149

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4150 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4209

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4210 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4261

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4262 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4321

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4322 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4354



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|417407155|gb|JAA50202.1| Putative e3 ubiquitin-protein ligase herc1 [Desmodus rotundus]
          Length = 4853

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3992 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4040

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4041 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4100

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4101 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4160

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF-SFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG +  +FG GD+G+LG G    
Sbjct: 4161 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSVVWAFGDGDYGKLGLGNSTA 4218

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4219 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4248



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4039 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4073

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4074 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4125

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4126 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4174

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4175 LEGYQIGQVACGLNHTLAVSADGSVVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4234

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4235 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4292

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4293 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4331



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4022 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4074

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4075 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4134

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4135 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4194

Query: 249  DDGEV-YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V + +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4195 ADGSVVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4252

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4253 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4298



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S +LT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLSLTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4087 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4146

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV   G   +A+G  
Sbjct: 4147 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSVVWAFGDG 4206

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4207 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4258

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4259 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4318

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4319 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4351



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLSLTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|431895932|gb|ELK05350.1| Putative E3 ubiquitin-protein ligase HERC1 [Pteropus alecto]
          Length = 4850

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3989 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4037

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4038 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4097

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4098 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4157

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4158 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4215

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4216 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4245



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4036 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4070

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4071 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4122

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4123 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4171

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4172 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4231

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4232 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4289

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4290 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4328



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4019 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4071

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4072 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4131

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4132 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4191

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4192 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4249

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4250 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4295



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4084 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4143

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4144 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4203

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4204 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4255

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4256 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4315

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4316 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4348



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|297296624|ref|XP_002804832.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Macaca
            mulatta]
          Length = 4824

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4010 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4044

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4045 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4096

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4097 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4145

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4146 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4205

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4206 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4263

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4264 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4300



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3963 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4011

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4012 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4071

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4072 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4131

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4132 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4189

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4190 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4219



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 3993 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4045

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4046 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4105

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4106 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4165

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4166 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4223

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4224 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4269



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4058 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4117

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4118 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4177

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4178 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4229

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4230 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4289

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4290 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4322



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|149574281|ref|XP_001514757.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1
            [Ornithorhynchus anatinus]
          Length = 4866

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4052 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4086

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4087 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4138

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4139 EEVV-----------QMSCGFKHSAVVTADGKMFTFGNGDYGRLGLGNTSNKKLPERVTA 4187

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4188 LEGYQIGQVACGLNHTLAVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4247

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V +LAG  I  V+ G 
Sbjct: 4248 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGA 4305

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++A+T  G ++++G    G+LG G      +P  + +
Sbjct: 4306 EHTLAITSTGDVYAWGSNSEGQLGLGHTNHVREPTLITV 4344



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ V  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLVEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGVAIQQI----SAGTSHSLA 732



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R+++IP         +QV  G   + V+   G V
Sbjct: 4005 YLWGAGRHGQLAEA-----------GRNVMIPAGAPSFSQAQQVICGQNCTFVIQANGTV 4053

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4054 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4113

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4114 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKMFTFGNGDYGRLGL 4173

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4174 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSTDGSMVWAFGDGDYGKLGLGNSTA 4231

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4232 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4261



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 31/299 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4035 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4087

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4088 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4147

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG ++ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4148 FKHSAVVTADGKMFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4207

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4208 TDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4265

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            ++FG+     L  GR     +P +VP+          GV    + + VA G  HTLAI 
Sbjct: 4266 YTFGQDRLIGLPEGRARNHNRPQQVPVLA--------GV----VIEDVAVGAEHTLAIT 4312



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLVEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4100 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 4159

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV   G   +A+G  
Sbjct: 4160 MFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSTDGSMVWAFGDG 4219

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4220 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4271

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  +AVGA H LA+   G ++AWG+N  GQLG G
Sbjct: 4272 RLIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGAEHTLAITSTGDVYAWGSNSEGQLGLG 4331

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  +  L G  +  I+AG  HS A T
Sbjct: 4332 HTNHVREPTLITVLQGKNIRQISAGRCHSAAWT 4364



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  V+ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLVEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|109484871|ref|XP_001075834.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Rattus
            norvegicus]
          Length = 4859

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3998 YLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTV 4046

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4047 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4106

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4107 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4166

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4167 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4224

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4225 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4254



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4045 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4079

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4080 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4131

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4132 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4180

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4181 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4240

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4241 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4298

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4299 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4337



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H ++L+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4028 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4080

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4081 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4140

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4141 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4200

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4201 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4258

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4259 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4304



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H L+L  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4093 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4152

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4153 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4212

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4213 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4264

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4265 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4324

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4325 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4357



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  +L+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|354474338|ref|XP_003499388.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
            [Cricetulus griseus]
          Length = 4859

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3998 YLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTV 4046

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4047 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4106

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4107 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4166

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4167 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4224

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4225 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4254



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4045 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4079

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4080 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4131

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4132 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4180

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4181 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4240

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4241 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 4298

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4299 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4337



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H ++L+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4028 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4080

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4081 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4140

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4141 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4200

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4201 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHV 4258

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    + + VA G  HTLA+
Sbjct: 4259 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAVGAEHTLAL 4304



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H L+L  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4093 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4152

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4153 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4212

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4213 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4264

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4265 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 4324

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4325 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 4357



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  +L+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|37695550|gb|AAR00320.1| HECT E3 ubiquitin ligase [Homo sapiens]
          Length = 1024

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSVDQGAEHMLILSSDGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HSTAL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSTALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  + +  V+CGG+HS  LT+DG +F+FG G 
Sbjct: 214 SWGKNECGQLGLGHTE--SKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V           + V  R     +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLV----------AELVGYR--VTQIACGRWHTLAYV 311



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 41/287 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGAEHMLILSSDGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H+ AL   G +++WG NE GQLG G T+ +  P  ++GL   
Sbjct: 185 -VEHLAGVPLAQISAGEAHSTALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 244 KVEFVACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGYRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           CG  H++A   D G +FSFG G  G+LG G   T  Q M +P+ + +
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGG--TRDQLMPLPVKVSS 346



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 33/262 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVNA-----LSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK    +  S  +      L   KI+Q   G +H LA+   G
Sbjct: 98  KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKIIQITCGDYHSLALSKGG 157

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 158 ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 203

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
             L+  G++++WG+        G  +    P  ++GL  ++V+ +A G  H+  L +DG 
Sbjct: 204 TALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGL 263

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
           L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+ A   D G+V+ +G G
Sbjct: 264 LFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSG 323

Query: 260 EHGRLGFGDNDKSSKMVPQKVN 281
           + G+LG G        +P KV+
Sbjct: 324 KDGQLGNGGTRDQLMPLPVKVS 345



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E ++   +++ L+  KV  V  G  +S  +  DG   
Sbjct: 206 LSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 42/267 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S A+   G        
Sbjct: 159 LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSTALSMSGNIYSWGKN 218

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS +  L N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 219 ECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHN 278

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 279 STQNE------LRPCLVAELVGYR--VTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGN 330

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G   Q+  +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 331 GGTRDQLMPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 385

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHST 245
            R+ P   +G     + D+    W ST
Sbjct: 386 -RTIPTLNEGTVKRWIADVETKRWQST 411


>gi|149042013|gb|EDL95854.1| rCG58270 [Rattus norvegicus]
          Length = 3507

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 2646 YLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTV 2694

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 2695 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 2754

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 2755 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 2814

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 2815 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 2872

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 2873 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 2902



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 2693 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 2727

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 2728 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 2779

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 2780 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 2828

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 2829 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 2888

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 2889 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 2946

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 2947 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 2985



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 34/312 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +P+   + S     Q  I G +C   +   G   A G   YG+ G+     DD       
Sbjct: 2665 VPATAPSFSQ---AQQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 2714

Query: 123  DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             + +       ++ + V + G+  HS+ LT  G V++WG         G+  +   P ++
Sbjct: 2715 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQI 2774

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +
Sbjct: 2775 EALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQI 2834

Query: 235  VDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+C
Sbjct: 2835 GQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVAC 2892

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   SVALT+DGH+++FG+     L  GR     +P ++P+          GV    + +
Sbjct: 2893 GTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIE 2940

Query: 354  LVACGGRHTLAI 365
             VA G  HTLA+
Sbjct: 2941 DVAVGAEHTLAL 2952



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 2741 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 2800

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 2801 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 2860

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 2861 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 2912

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 2913 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 2972

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 2973 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 3005


>gi|355692784|gb|EHH27387.1| hypothetical protein EGK_17574 [Macaca mulatta]
          Length = 4862

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4301 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4337



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+       AG       I + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPV------LAG------MIIEDVAVGAEHTLAL 4306



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  + +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGMIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTGLQGKNIRQISAGRCHSAAWT 4359



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|426379401|ref|XP_004056386.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Gorilla
            gorilla gorilla]
          Length = 4502

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 3688 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 3722

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 3723 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 3774

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 3775 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 3823

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 3824 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 3883

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 3884 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 3941

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 3942 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTVV 3978



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3641 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 3689

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 3690 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 3749

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 3750 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 3809

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 3810 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 3867

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 3868 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 3897



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 3671 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 3723

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 3724 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 3783

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 3784 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 3843

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 3844 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 3901

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 3902 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 3947



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 3736 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 3795

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 3796 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 3855

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 3856 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 3907

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 3908 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 3967

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 3968 HTNHVREPTVVTGLQGKNVRQISAGRCHSAAWT 4000



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 143/285 (50%), Gaps = 39/285 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGW 256
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D E + +
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDREHHSF 745



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 155/337 (45%), Gaps = 46/337 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSF 310
           P+KV+ L G  I Q+S G +HS+   AL RD    SF
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDREHHSF 745


>gi|126131099|ref|NP_003913.3| probable E3 ubiquitin-protein ligase HERC1 [Homo sapiens]
 gi|296434522|sp|Q15751.2|HERC1_HUMAN RecName: Full=Probable E3 ubiquitin-protein ligase HERC1; AltName:
            Full=HECT domain and RCC1-like domain-containing protein
            1; AltName: Full=p532; AltName: Full=p619
 gi|119598061|gb|EAW77655.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1, isoform CRA_b [Homo
            sapiens]
 gi|119598062|gb|EAW77656.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1, isoform CRA_b [Homo
            sapiens]
          Length = 4861

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4301 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4337



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4306



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4359



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|281207411|gb|EFA81594.1| hypothetical protein PPL_05585 [Polysphondylium pallidum PN500]
          Length = 624

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 27/266 (10%)

Query: 93  GRAYAWGGNEYGQCGEE---------------PERKDDTGRILRRDIVIPQRCAPKLIVR 137
           G+ Y+WG N YGQC  +                E  DD+   +   I +P      LIV 
Sbjct: 85  GQLYSWGYNFYGQCALDNNHNHNNNNNNKQTVDEDDDDSNFNI---IKLPTLIKQGLIVS 141

Query: 138 QVAAGGTHSV-VLTREGHVWTWG-QPWPP---GDIKQISVPVRVQGLEQV--KLIAVGAF 190
            +A G +H++ VL  +  V +WG   W     GD      P  + GL Q     +A G+ 
Sbjct: 142 MIACGDSHALAVLPNDATVLSWGCNRWGQLGLGDQVNRCHPTPISGLSQSIPVFVAAGSQ 201

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H+  L + G L+++G   +G+LG G+  P   P P+  L G  +V +AAG  HS A+   
Sbjct: 202 HSFVLSKFGELFSFGCGTFGRLGHGNELPSFNPRPISTLVGKHIVSVAAGLMHSAAVDSQ 261

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G +Y WG   +G+LG G   K +  +P K   L   +IV+V CG  H++ L  +GH++SF
Sbjct: 262 GALYTWGWNRYGQLGLGTVKKHT--LPNKNKELERFNIVKVVCGKNHTLVLDVNGHVYSF 319

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINI 336
           G    G+LG G    + +P  + +++
Sbjct: 320 GFNVCGQLGIGSYTDSIKPNRIDLDL 345



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 117/260 (45%), Gaps = 23/260 (8%)

Query: 76  IVQAAIGGWHCLAV-DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           +   A G  H LAV  +     +WG N +GQ G         G  + R    P     + 
Sbjct: 140 VSMIACGDSHALAVLPNDATVLSWGCNRWGQLG--------LGDQVNRCHPTPISGLSQS 191

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWG----------QPWPPGDIKQISVPVRVQGLEQVKL 184
           I   VAAG  HS VL++ G ++++G             P  + + IS  V     + +  
Sbjct: 192 IPVFVAAGSQHSFVLSKFGELFSFGCGTFGRLGHGNELPSFNPRPISTLVG----KHIVS 247

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +A G  H+ A+   GAL+ WG N YGQLG G  +  + P   + L    +V +  G  H+
Sbjct: 248 VAAGLMHSAAVDSQGALYTWGWNRYGQLGLGTVKKHTLPNKNKELERFNIVKVVCGKNHT 307

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
             L  +G VY +G    G+LG G    S K     ++L   ++I+ ++ G  H + LT+ 
Sbjct: 308 LVLDVNGHVYSFGFNVCGQLGIGSYTDSIKPNRIDLDLKQNDEIIDIAAGYYHVLLLTKK 367

Query: 305 GHIFSFGRGDHGRLGYGRKV 324
           G ++SFG    G LG G  V
Sbjct: 368 GCVYSFGYISDGALGLGDVV 387



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 64/309 (20%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ ++ LS +  V  A G  H   +   G  +++G   +G+ G   E      R +    
Sbjct: 182 PTPISGLSQSIPVFVAAGSQHSFVLSKFGELFSFGCGTFGRLGHGNELPSFNPRPI---- 237

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDIKQISVPVRVQG 178
                   K IV  VAAG  HS  +  +G ++TWG  W        G +K+ ++P + + 
Sbjct: 238 ---STLVGKHIV-SVAAGLMHSAAVDSQGALYTWG--WNRYGQLGLGTVKKHTLPNKNKE 291

Query: 179 LEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP--IPVQGLSGLTL 234
           LE+  ++ V  G  H L L  +G ++++G N  GQLG G      +P  I +       +
Sbjct: 292 LERFNIVKVVCGKNHTLVLDVNGHVYSFGFNVCGQLGIGSYTDSIKPNRIDLDLKQNDEI 351

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-------------------------- 268
           +DIAAG +H   LT  G VY +G    G LG GD                          
Sbjct: 352 IDIAAGYYHVLLLTKKGCVYSFGYISDGALGLGDVVGHQSRPKLMPFSHFNHEFNDSIDS 411

Query: 269 ----------------NDKSSKMVPQKVNLL--AGEDIVQVSCGGTHSVALTRDGHIFSF 310
                           N+ ++K+ P+ V L    G+  V+++ GG HS  +T  G +++F
Sbjct: 412 YKEIYGEYNSDSENDINNNNAKLPPKVVELHNEIGDVAVKIAAGGWHSAIITSSGRLYTF 471

Query: 311 GRGDHGRLG 319
           G GD+ RLG
Sbjct: 472 GLGDNFRLG 480



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 140/351 (39%), Gaps = 80/351 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + +  ++++WG    GQLG+G+   R     +  L       V AGS++S  +   G+  
Sbjct: 154 LPNDATVLSWGCNRWGQLGLGDQVNRCHPTPISGLSQSIPVFVAAGSQHSFVLSKFGELF 213

Query: 61  T------------ENIPS----QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           +              +PS     ++ L    IV  A G  H  AVD QG  Y WG N YG
Sbjct: 214 SFGCGTFGRLGHGNELPSFNPRPISTLVGKHIVSVAAGLMHSAAVDSQGALYTWGWNRYG 273

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--- 161
           Q G         G + +  +    +   +  + +V  G  H++VL   GHV+++G     
Sbjct: 274 QLG--------LGTVKKHTLPNKNKELERFNIVKVVCGKNHTLVLDVNGHVYSFGFNVCG 325

Query: 162 -----WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                     IK   + + ++  +++  IA G +H L L + G ++++G    G LG GD
Sbjct: 326 QLGIGSYTDSIKPNRIDLDLKQNDEIIDIAAGYYHVLLLTKKGCVYSFGYISDGALGLGD 385

Query: 217 T---QPRSQPIPVQGLS------------------------------------------- 230
               Q R + +P    +                                           
Sbjct: 386 VVGHQSRPKLMPFSHFNHEFNDSIDSYKEIYGEYNSDSENDINNNNAKLPPKVVELHNEI 445

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           G   V IAAGGWHS  +T  G +Y +G G++ RL  G+N +  + +P  VN
Sbjct: 446 GDVAVKIAAGGWHSAIITSSGRLYTFGLGDNFRL--GNNCQEDQDMPCIVN 494


>gi|148654597|ref|YP_001274802.1| regulator of chromosome condensation, RCC1 [Roseiflexus sp. RS-1]
 gi|148566707|gb|ABQ88852.1| regulator of chromosome condensation, RCC1 [Roseiflexus sp. RS-1]
          Length = 837

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 132/328 (40%), Gaps = 36/328 (10%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEP--------------YKVRSVVAGSRNSLAICD 55
           WG    GQLG G  E R     V  L                   R V    RNS     
Sbjct: 500 WGRNSSGQLGDGTTERRLTPVTVSGLSAATALAAGDSHTCALLDTRRVRCWGRNSSGQLG 559

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG       P  V+ LS    + A  G  H   + D G    WG N  GQ G+       
Sbjct: 560 DGTRTDRVTPVAVSGLSGATALAA--GNSHTCTLLDTGTVQCWGWNSSGQLGDGT----- 612

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
                R D V P   +    V  +AAG  H+  L   G V  WG+        G      
Sbjct: 613 -----RTDRVTPAAVSGLSGVTALAAGANHTCALMDSGTVQCWGRNSSGQLGDGTRTDRV 667

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            P  V GL  V  +A GA H  AL + G +  WG N  GQLG G T  R  P  V GLSG
Sbjct: 668 TPAAVSGLSGVTALAAGANHTCALMDSGTVQCWGRNSSGQLGDGTTTDRVTPAAVSGLSG 727

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +T   + AG  H+ AL   G V  WG+ E G+LG  D   + ++ P  V+ L+G  I  +
Sbjct: 728 VT--ALVAGANHTCALMPTGTVQCWGKNEFGQLG--DGTTTDRLTPVAVSGLSG--ITAL 781

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           + G  H+ A+   G    +GR   GRLG
Sbjct: 782 AAGSEHTCAVLNTGAARCWGRNLFGRLG 809



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 148/352 (42%), Gaps = 40/352 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           +  T ++  WG  E GQLG G  E R    VV  L      ++ AG R++ A+       
Sbjct: 391 LLQTGTVQCWGRNEFGQLGDGTTERRLTPVVVSGLS--GATALTAGDRHTCAVLQTRTAQ 448

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T+    P  V+ LS    + A  G  H  A+ +   A  WG N  G
Sbjct: 449 CWGENSPGQLGDGTTERRLTPVTVSGLSGATSLAAGDG--HTCALMNVRTAQCWGRNSSG 506

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G   RR  + P   +       +AAG +H+  L     V  WG+    
Sbjct: 507 QLGD--------GTTERR--LTPVTVSGLSAATALAAGDSHTCALLDTRRVRCWGRNSSG 556

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G       PV V GL     +A G  H   L + G +  WG N  GQLG G    R
Sbjct: 557 QLGDGTRTDRVTPVAVSGLSGATALAAGNSHTCTLLDTGTVQCWGWNSSGQLGDGTRTDR 616

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  V GLSG+T   +AAG  H+ AL D G V  WGR   G+LG  D  ++ ++ P  V
Sbjct: 617 VTPAAVSGLSGVT--ALAAGANHTCALMDSGTVQCWGRNSSGQLG--DGTRTDRVTPAAV 672

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + L+G  +  ++ G  H+ AL   G +  +GR   G+LG G       P  V
Sbjct: 673 SGLSG--VTALAAGANHTCALMDSGTVQCWGRNSSGQLGDGTTTDRVTPAAV 722



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 170/392 (43%), Gaps = 54/392 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + +T ++  WG    GQLG G   +R     V  L    V ++ AG  ++ A+ + G   
Sbjct: 91  LLNTGTVWCWGWNGSGQLGDGTTTDRAMPVAVSGLS--GVTALAAGRYHTCALLNTGTVQ 148

Query: 59  -------------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T T  + P  V+ LS   ++  A G  H  A+ D      WG NE+G
Sbjct: 149 CWGLNSSGQLGDWTITNRVTPVAVSGLSG--VIALAAGDRHTCALLDTRTVRCWGENEHG 206

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPW 162
           Q G+              D   P   +    V  +AAGG H+      G V  WG     
Sbjct: 207 QLGDGTT----------NDRWTPVAVSGLSGVTALAAGGRHTCAALNTGTVQCWGGNGAG 256

Query: 163 PPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             GD  + S   P+ V GL     +A G  H  AL + G +  WG N  GQLG G T+ R
Sbjct: 257 QLGDGTRTSRLTPMAVSGLSGATALAAGFEHTCALLDTGTVRCWGLNSSGQLGDGTTERR 316

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V GLSG+T   +AAG +H+ A+     V  WG    G+LG G  ++  ++ P  V
Sbjct: 317 LTPVAVSGLSGVT--ALAAGDFHTCAVLQTETVQCWGLNSSGQLGDGTTER--RLTPVSV 372

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + L+G     ++ GG H+ AL + G +  +GR + G+LG G    T +    P+ +    
Sbjct: 373 SGLSGS--TALAAGGVHTCALLQTGTVQCWGRNEFGQLGDG----TTERRLTPVVVSGLS 426

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
                      A  +  G RHT A+++ +T +
Sbjct: 427 G----------ATALTAGDRHTCAVLQTRTAQ 448



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 131/311 (42%), Gaps = 38/311 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           +  T  +  WG    GQLG G   +R     V  L      ++ AG+ ++  + D G   
Sbjct: 541 LLDTRRVRCWGRNSSGQLGDGTRTDRVTPVAVSGLS--GATALAAGNSHTCTLLDTGTVQ 598

Query: 59  -------------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T+T+ + P+ V+ LS   +   A G  H  A+ D G    WG N  G
Sbjct: 599 CWGWNSSGQLGDGTRTDRVTPAAVSGLSG--VTALAAGANHTCALMDSGTVQCWGRNSSG 656

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+            R D V P   +    V  +AAG  H+  L   G V  WG+    
Sbjct: 657 QLGDGT----------RTDRVTPAAVSGLSGVTALAAGANHTCALMDSGTVQCWGRNSSG 706

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G       P  V GL  V  +  GA H  AL   G +  WG NE+GQLG G T  R
Sbjct: 707 QLGDGTTTDRVTPAAVSGLSGVTALVAGANHTCALMPTGTVQCWGKNEFGQLGDGTTTDR 766

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V GLSG+T   +AAG  H+ A+ + G    WGR   GRLG    D S   +P+ V
Sbjct: 767 LTPVAVSGLSGIT--ALAAGSEHTCAVLNTGAARCWGRNLFGRLGISPLDYSP--LPRTV 822

Query: 281 NLLAGEDIVQV 291
            ++  +  + V
Sbjct: 823 VIIPHQVFIPV 833



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 154/392 (39%), Gaps = 70/392 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           +  T ++  WG    GQLG G  E R     V  L    V ++ AG  ++ A+       
Sbjct: 291 LLDTGTVRCWGLNSSGQLGDGTTERRLTPVAVSGLS--GVTALAAGDFHTCAVLQTETVQ 348

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T+    P  V+ LS +  + A  GG H  A+   G    WG NE+G
Sbjct: 349 CWGLNSSGQLGDGTTERRLTPVSVSGLSGSTALAA--GGVHTCALLQTGTVQCWGRNEFG 406

Query: 105 QCGE-EPERK-------------------DDTGRILRR---------------DIVIPQR 129
           Q G+   ER+                     T  +L+                D    +R
Sbjct: 407 QLGDGTTERRLTPVVVSGLSGATALTAGDRHTCAVLQTRTAQCWGENSPGQLGDGTTERR 466

Query: 130 CAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
             P  +        +AAG  H+  L        WG+        G  ++   PV V GL 
Sbjct: 467 LTPVTVSGLSGATSLAAGDGHTCALMNVRTAQCWGRNSSGQLGDGTTERRLTPVTVSGLS 526

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
               +A G  H  AL +   +  WG N  GQLG G    R  P+ V GLSG T   +AAG
Sbjct: 527 AATALAAGDSHTCALLDTRRVRCWGRNSSGQLGDGTRTDRVTPVAVSGLSGAT--ALAAG 584

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H+  L D G V  WG    G+L  GD  ++ ++ P  V+ L+G  +  ++ G  H+ A
Sbjct: 585 NSHTCTLLDTGTVQCWGWNSSGQL--GDGTRTDRVTPAAVSGLSG--VTALAAGANHTCA 640

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L   G +  +GR   G+LG G +     P  V
Sbjct: 641 LMDSGTVQCWGRNSSGQLGDGTRTDRVTPAAV 672



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 129/282 (45%), Gaps = 20/282 (7%)

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            +G+  T    +  + L  ++++  A G +H  A+ + G  + WG N  GQ G+      
Sbjct: 57  SEGRLMTNPGKAPASPLPLSRVIALAAGRYHTCALLNTGTVWCWGWNGSGQLGDGTTT-- 114

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGD--IKQI 170
                   D  +P   +    V  +AAG  H+  L   G V  WG       GD  I   
Sbjct: 115 --------DRAMPVAVSGLSGVTALAAGRYHTCALLNTGTVQCWGLNSSGQLGDWTITNR 166

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             PV V GL  V  +A G  H  AL +   +  WG NE+GQLG G T  R  P+ V GLS
Sbjct: 167 VTPVAVSGLSGVIALAAGDRHTCALLDTRTVRCWGENEHGQLGDGTTNDRWTPVAVSGLS 226

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+T   +AAGG H+ A  + G V  WG    G+L  GD  ++S++ P  V+ L+G     
Sbjct: 227 GVT--ALAAGGRHTCAALNTGTVQCWGGNGAGQL--GDGTRTSRLTPMAVSGLSGA--TA 280

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ G  H+ AL   G +  +G    G+LG G       P+ V
Sbjct: 281 LAAGFEHTCALLDTGTVRCWGLNSSGQLGDGTTERRLTPVAV 322



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 159/387 (41%), Gaps = 54/387 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           +  T ++  WG  E GQLG G   +R     V  L    V ++ AG R++ A  +     
Sbjct: 191 LLDTRTVRCWGENEHGQLGDGTTNDRWTPVAVSGLS--GVTALAAGGRHTCAALNTGTVQ 248

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG   +   P  V+ LS    + A  G  H  A+ D G    WG N  G
Sbjct: 249 CWGGNGAGQLGDGTRTSRLTPMAVSGLSGATALAA--GFEHTCALLDTGTVRCWGLNSSG 306

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           Q G+        G   RR  + P   +    V  +AAG  H+  + +   V  WG     
Sbjct: 307 QLGD--------GTTERR--LTPVAVSGLSGVTALAAGDFHTCAVLQTETVQCWGLNSSG 356

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
               G  ++   PV V GL     +A G  H  AL + G +  WG NE+GQLG G T+ R
Sbjct: 357 QLGDGTTERRLTPVSVSGLSGSTALAAGGVHTCALLQTGTVQCWGRNEFGQLGDGTTERR 416

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V GLSG T   + AG  H+ A+        WG    G+LG G  ++  ++ P  V
Sbjct: 417 LTPVVVSGLSGAT--ALTAGDRHTCAVLQTRTAQCWGENSPGQLGDGTTER--RLTPVTV 472

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + L+G     ++ G  H+ AL        +GR   G+LG G    T +    P+ +    
Sbjct: 473 SGLSGA--TSLAAGDGHTCALMNVRTAQCWGRNSSGQLGDG----TTERRLTPVTVSGLS 526

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                      A  +A G  HT A+++
Sbjct: 527 ----------AATALAAGDSHTCALLD 543


>gi|288921247|ref|ZP_06415531.1| regulator of chromosome condensation RCC1 [Frankia sp. EUN1f]
 gi|288347337|gb|EFC81630.1| regulator of chromosome condensation RCC1 [Frankia sp. EUN1f]
          Length = 370

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 149/346 (43%), Gaps = 41/346 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------------ 54
           ++AWG+   GQLG G    R     V  ++  ++ +V AG     A+             
Sbjct: 26  VLAWGANGQGQLGDGTTTGRLTPVQVTGID--EITAVAAGESTGYAMAWGAVQAWGDNSH 83

Query: 55  ---DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T     P QV+ L    ++    G  +  AV   G A+AWG N  G  G+   
Sbjct: 84  NELGDGTTTDRLTPVQVSDL--VDVIAVGAGAHNGYAVRSDGTAWAWGENSDGAVGD--- 138

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR-EGHVWTWG----QPWPPGD 166
                G  + R    P + +    V  VA GG H+    R +G  W WG         G 
Sbjct: 139 -----GTTVNRST--PVQVSDLTDVISVA-GGMHTGYAVRSDGTAWAWGFNNAGQLGDGT 190

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
               S PV+V  L QVK +A G +   AL++DG +WAWG+N +G LG G T     P+PV
Sbjct: 191 TTSRSTPVQVSNLTQVKAVAGGVYRGYALRDDGTVWAWGSNSFGALGNGTTTDSLTPVPV 250

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL+   ++ IAAG     AL  DG V+ WG    G+LG G    S    P  V +    
Sbjct: 251 SGLT--QIIAIAAGSNSGYALRSDGTVWAWGYNYVGQLGDGTTTNS----PTPVQVSGLT 304

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  ++ G     AL RDG + ++G    G LG G       P +V
Sbjct: 305 RVAAIAAGAYTGYALRRDGTVRAWGSNAGGALGDGTNTNRPTPAQV 350



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 104/251 (41%), Gaps = 32/251 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVRS---VVAGSRNSLAIC 54
           AWG   DG +G G    R     V  L             Y VRS     A   N+    
Sbjct: 127 AWGENSDGAVGDGTTVNRSTPVQVSDLTDVISVAGGMHTGYAVRSDGTAWAWGFNNAGQL 186

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            DG T + + P QV+ L+  K V   +  +   A+ D G  +AWG N +G  G       
Sbjct: 187 GDGTTTSRSTPVQVSNLTQVKAVAGGV--YRGYALRDDGTVWAWGSNSFGALGNGTTT-- 242

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
                   D + P   +    +  +AAG      L  +G VW WG  +      G     
Sbjct: 243 --------DSLTPVPVSGLTQIIAIAAGSNSGYALRSDGTVWAWGYNYVGQLGDGTTTNS 294

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             PV+V GL +V  IA GA+   AL+ DG + AWG+N  G LG G    R  P  V GLS
Sbjct: 295 PTPVQVSGLTRVAAIAAGAYTGYALRRDGTVRAWGSNAGGALGDGTNTNRPTPAQVTGLS 354

Query: 231 GLTLVDIAAGG 241
           G++   IA GG
Sbjct: 355 GISA--IAGGG 363


>gi|1477565|gb|AAD12586.1| p532 [Homo sapiens]
          Length = 4861

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4301 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4337



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 ADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4306



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4359



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|297838741|ref|XP_002887252.1| hypothetical protein ARALYDRAFT_476103 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333093|gb|EFH63511.1| hypothetical protein ARALYDRAFT_476103 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1027

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 174/356 (48%), Gaps = 59/356 (16%)

Query: 43  VVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQA---AIGGWHCLAVDDQGRAYAWG 99
           V+ G+ NSL    +  T+   +P    AL +T ++ A   A G  H + V  QG  ++WG
Sbjct: 260 VLTGTGNSL----NSTTEDVLLP---KALESTIVLDAQNIACGKCHAVLVTKQGEIFSWG 312

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWT 157
             + G+ G   E           D+  P+  +    L  + +A G  H+  +T+ G +++
Sbjct: 313 EGKGGKLGHGLET----------DVQQPKFISSVRGLGFKSLACGDFHTCAITQSGDLYS 362

Query: 158 WGQPWPPGDI------KQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNE 208
           WG      D+          +P RV G  Q   V  +A G +H   +   G L+ +G+  
Sbjct: 363 WGDGTHNVDLLGHGNESSCWIPKRVTGALQGLYVSYVACGPWHTAVVASSGQLFTFGDGS 422

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-------------DGEVYG 255
           +G LG GD +  S P  V+ LSGL +  +A G WH+ AL +              G+V+ 
Sbjct: 423 FGALGHGDRRSTSVPREVKILSGLIVTKVACGVWHTAALVEVTNEASEAEVGSSRGQVFT 482

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG GE G+LG GDND  ++++P+ V  L+ E+I QV+CG + +V+LT  GH+++ G   +
Sbjct: 483 WGDGEKGQLGHGDND--AQLLPECVISLSNENICQVACGHSLTVSLTSTGHVYTMGSTAY 540

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
           G+L  G     G       N PA R  GD V+     + +ACG  H +A++  ++E
Sbjct: 541 GQL--GNPTAKG-------NFPA-RVEGDIVEAS--VEEIACGSYH-VAVLTSKSE 583



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 13/191 (6%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           IA G  H + + + G +++WG  + G+LG G      QP  +  + GL    +A G +H+
Sbjct: 292 IACGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDVQQPKFISSVRGLGFKSLACGDFHT 351

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTR 303
            A+T  G++Y WG G H     G  ++SS  +P++V   L G  +  V+CG  H+  +  
Sbjct: 352 CAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGALQGLYVSYVACGPWHTAVVAS 411

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
            G +F+FG G  G LG+G + +T  P EV I          G+    I   VACG  HT 
Sbjct: 412 SGQLFTFGDGSFGALGHGDRRSTSVPREVKI--------LSGL----IVTKVACGVWHTA 459

Query: 364 AIVEWQTEESK 374
           A+VE   E S+
Sbjct: 460 ALVEVTNEASE 470



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 110/261 (42%), Gaps = 36/261 (13%)

Query: 64  IPSQVN-ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           IP +V  AL    +   A G WH   V   G+ + +G   +G  G             RR
Sbjct: 383 IPKRVTGALQGLYVSYVACGPWHTAVVASSGQLFTFGDGSFGALGHGD----------RR 432

Query: 123 DIVIPQ--RCAPKLIVRQVAAGGTHSVVL-------------TREGHVWTWGQ----PWP 163
              +P+  +    LIV +VA G  H+  L             +  G V+TWG        
Sbjct: 433 STSVPREVKILSGLIVTKVACGVWHTAALVEVTNEASEAEVGSSRGQVFTWGDGEKGQLG 492

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNL--ALQEDGALWAWGNNEYGQLGTGDTQPRS 221
            GD     +P  V  L    +  V   H+L  +L   G ++  G+  YGQLG   T   +
Sbjct: 493 HGDNDAQLLPECVISLSNENICQVACGHSLTVSLTSTGHVYTMGSTAYGQLG-NPTAKGN 551

Query: 222 QPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  V+G +   ++ +IA G +H   LT   E+Y WG+G +G+LG G  +  +K  P  V
Sbjct: 552 FPARVEGDIVEASVEEIACGSYHVAVLTSKSEIYTWGKGLNGQLGHGTIE--NKREPAVV 609

Query: 281 NLLAGEDIVQVSCGGTHSVAL 301
             L  + +  ++CG   +  +
Sbjct: 610 GFLKEKQVKAITCGSNFTAVI 630



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 59/154 (38%), Gaps = 44/154 (28%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG GE GQLG G+N+                                     + +P 
Sbjct: 480 VFTWGDGEKGQLGHGDND------------------------------------AQLLPE 503

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V +LSN  I Q A G    +++   G  Y  G   YGQ G    + +   R+   DIV 
Sbjct: 504 CVISLSNENICQVACGHSLTVSLTSTGHVYTMGSTAYGQLGNPTAKGNFPARV-EGDIV- 561

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
                 +  V ++A G  H  VLT +  ++TWG+
Sbjct: 562 ------EASVEEIACGSYHVAVLTSKSEIYTWGK 589



 Score = 37.7 bits (86), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S + I  WG G +GQLG G  E +    VV  L+  +V+++  GS  +  IC
Sbjct: 578 LTSKSEIYTWGKGLNGQLGHGTIENKREPAVVGFLKEKQVKAITCGSNFTAVIC 631


>gi|403347403|gb|EJY73122.1| RCC1 and BTB domaincontaining protein putative [Oxytricha
           trifallax]
          Length = 685

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 135/286 (47%), Gaps = 38/286 (13%)

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            + +G N YG+ G         G +  R I    R   ++ V Q+AAG  H  VLTR G 
Sbjct: 41  VFVFGQNSYGELG--------LGDVQERSIPSQVRFFDEMNVTQIAAGNEHIAVLTRNGD 92

Query: 155 VWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFH---NLA-LQEDGALWAWGN 206
           V T G         G+ K IS P +++ L+ +++  + + +   NLA + +DG L+  G 
Sbjct: 93  VLTVGFNGSGQLGHGNNKSISTPKKIESLKNIRITHISSANGCENLAIISQDGKLYTCGY 152

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE--------VYGWGR 258
           N YGQLG G     S P  VQ L    + +++   +HS  +T D          VY  GR
Sbjct: 153 NNYGQLGHGTQSNLSTPTLVQALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVYSVGR 212

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            ++G+L  G      ++ P+ +  L    ++Q +CG  HSV +T  G +FS G  D+G+L
Sbjct: 213 NDNGQL--GQEHTCHEITPKIIRSLNTRQVIQTACGLHHSVFVTVHGEVFSCGFNDNGQL 270

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G+    +  QP+ +           + +  ++I +  ACG  HTL 
Sbjct: 271 GHNDTKSRNQPVLI-----------ESLKNKFIVQ-AACGYYHTLV 304



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 181/404 (44%), Gaps = 66/404 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA--GSRNSLAICDDGKTKT--- 61
           ++  G    GQLG GNN+       +++L+  ++  + +  G  N   I  DGK  T   
Sbjct: 93  VLTVGFNGSGQLGHGNNKSISTPKKIESLKNIRITHISSANGCENLAIISQDGKLYTCGY 152

Query: 62  -----------ENI--PSQVNALSNTKIVQAAIGGWHCLAV--------DDQGRAYAWGG 100
                       N+  P+ V AL +T++   +   +H L V        + Q   Y+ G 
Sbjct: 153 NNYGQLGHGTQSNLSTPTLVQALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVYSVGR 212

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWT 157
           N+ GQ G+E    + T +I+R            L  RQV   A G  HSV +T  G V++
Sbjct: 213 NDNGQLGQEHTCHEITPKIIR-----------SLNTRQVIQTACGLHHSVFVTVHGEVFS 261

Query: 158 WGQ----PWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQ 211
            G          D K  + PV ++ L+   ++  A G +H L  ++ G ++A+G N+ GQ
Sbjct: 262 CGFNDNGQLGHNDTKSRNQPVLIESLKNKFIVQAACGYYHTLVRRDTGEIYAFGRNDKGQ 321

Query: 212 LGT-GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL---TDDGEVYGWGRGEHGRL--G 265
           LG   + Q   QP  +Q    LT+ +I   G +   L    +  +      GE G +  G
Sbjct: 322 LGIETNGQALIQPKQIQEF--LTVSNIQHSGGNQNQLHSGQEHNQPSSQSLGESGAIMQG 379

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             +++  +   PQ   L    +I +++CG  HS+AL   G +F+FGRG+HG+LG G   T
Sbjct: 380 LAESNNLNNQQPQVQYLSKKVNISKIACGCYHSIALCESGQLFTFGRGNHGQLGQGN--T 437

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
             Q +        P+      D++ I   +A G  HT+ +V+ +
Sbjct: 438 EDQKL--------PKQVASLHDKKVIG--IAGGFYHTIVLVKQK 471



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 29/296 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G  +  +IPSQV       + Q A G  H   +   G     G N  GQ G    +   T
Sbjct: 55  GDVQERSIPSQVRFFDEMNVTQIAAGNEHIAVLTRNGDVLTVGFNGSGQLGHGNNKSIST 114

Query: 117 GRILR--RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQI 170
            + +   ++I I    +        A G  +  +++++G ++T G         G    +
Sbjct: 115 PKKIESLKNIRITHISS--------ANGCENLAIISQDGKLYTCGYNNYGQLGHGTQSNL 166

Query: 171 SVPVRVQGLE--QVKLIAVGAFHNLALQED--------GALWAWGNNEYGQLGTGDTQPR 220
           S P  VQ L+  QV  ++   +H+L + +D          +++ G N+ GQLG   T   
Sbjct: 167 STPTLVQALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVYSVGRNDNGQLGQEHTCHE 226

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P  ++ L+   ++  A G  HS  +T  GEV+  G  ++G+L  G ND  S+  P  +
Sbjct: 227 ITPKIIRSLNTRQVIQTACGLHHSVFVTVHGEVFSCGFNDNGQL--GHNDTKSRNQPVLI 284

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
             L  + IVQ +CG  H++     G I++FGR D G+LG     T GQ +  P  I
Sbjct: 285 ESLKNKFIVQAACGYYHTLVRRDTGEIYAFGRNDKGQLGIE---TNGQALIQPKQI 337



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 166/393 (42%), Gaps = 48/393 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           +  +G    G+LG+G+ +ER     V+  +   V  + AG+ +   +  +          
Sbjct: 41  VFVFGQNSYGELGLGDVQERSIPSQVRFFDEMNVTQIAAGNEHIAVLTRNGDVLTVGFNG 100

Query: 57  ------GKTKTENIPSQVNALSNTKIVQ-AAIGGWHCLAVDDQ-GRAYAWGGNEYGQCGE 108
                 G  K+ + P ++ +L N +I   ++  G   LA+  Q G+ Y  G N YGQ G 
Sbjct: 101 SGQLGHGNNKSISTPKKIESLKNIRITHISSANGCENLAIISQDGKLYTCGYNNYGQLGH 160

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH--------VWTW-- 158
             +    T  ++        +      V  V+    HS+++T++          V++   
Sbjct: 161 GTQSNLSTPTLV--------QALKDTQVTNVSCSYYHSLIVTQDMRQASNQQTTVYSVGR 212

Query: 159 ---GQPWPPGDIKQISVP-VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
              GQ        +I+   +R     QV   A G  H++ +   G +++ G N+ GQLG 
Sbjct: 213 NDNGQLGQEHTCHEITPKIIRSLNTRQVIQTACGLHHSVFVTVHGEVFSCGFNDNGQLGH 272

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            DT+ R+QP+ ++ L    +V  A G +H+    D GE+Y +GR + G+LG   N + + 
Sbjct: 273 NDTKSRNQPVLIESLKNKFIVQAACGYYHTLVRRDTGEIYAFGRNDKGQLGIETNGQ-AL 331

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           + P+++        +Q S GG  +   +   H     +     LG    +  G      +
Sbjct: 332 IQPKQIQEFLTVSNIQHS-GGNQNQLHSGQEH----NQPSSQSLGESGAIMQGLAESNNL 386

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           N   P+     + ++     +ACG  H++A+ E
Sbjct: 387 NNQQPQ--VQYLSKKVNISKIACGCYHSIALCE 417



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 130/289 (44%), Gaps = 50/289 (17%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVC------VVKALEPYKVRSVVAGSRNSLAIC---- 54
           T++ + G  ++GQLG      +E  C      ++++L   +V     G  +S+ +     
Sbjct: 205 TTVYSVGRNDNGQLG------QEHTCHEITPKIIRSLNTRQVIQTACGLHHSVFVTVHGE 258

Query: 55  -------DDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                  D+G+     TK+ N P  + +L N  IVQAA G +H L   D G  YA+G N+
Sbjct: 259 VFSCGFNDNGQLGHNDTKSRNQPVLIESLKNKFIVQAACGYYHTLVRRDTGEIYAFGRND 318

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA-AGGTHSVVLTREGHVWTWGQP 161
            GQ G E       G+ L    + P++    L V  +  +GG  + + + + H     Q 
Sbjct: 319 KGQLGIET-----NGQAL----IQPKQIQEFLTVSNIQHSGGNQNQLHSGQEHNQPSSQS 369

Query: 162 W-PPGDIKQ--------ISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEY 209
               G I Q         +   +VQ L +   +  IA G +H++AL E G L+ +G   +
Sbjct: 370 LGESGAIMQGLAESNNLNNQQPQVQYLSKKVNISKIACGCYHSIALCESGQLFTFGRGNH 429

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           GQLG G+T+ +  P  V  L    ++ IA G +H+  L    +V G  +
Sbjct: 430 GQLGQGNTEDQKLPKQVASLHDKKVIGIAGGFYHTIVLVKQKKVKGISQ 478


>gi|418694952|ref|ZP_13255978.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. H1]
 gi|421108363|ref|ZP_15568903.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. H2]
 gi|409957111|gb|EKO16026.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. H1]
 gi|410006629|gb|EKO60380.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. H2]
          Length = 431

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 155/351 (44%), Gaps = 51/351 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ +  +  WG+   GQLGIGNN            +P K     AG+R            
Sbjct: 118 ISQSGRVYTWGANSKGQLGIGNNNT----------DPAKASD--AGNRQP---------- 155

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+++  ++N   V  A G  H L +   G   A+G N  GQ G      +      
Sbjct: 156 ----PTEIPGINNA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSS 209

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---------PPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+            P +  Q S
Sbjct: 210 NPVNVVQLRN-----VIQVIAGSEHSAALTENGEVYIWGRNQYGNLGNGIISPANTVQ-S 263

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           VPV+V+GL ++K IA G  H LAL  DG +++WG N  GQLG G     + P        
Sbjct: 264 VPVKVEGLSKIKQIANGRDHILALTSDGKIYSWGLNASGQLGIGGNG--NPPPTPIPTQI 321

Query: 232 LTLVDIA---AGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           L + D+A   AGG  S A+  +GEV GWG  G    L  G+++      P K  ++  ++
Sbjct: 322 LNIQDVASIWAGGTQSFAILKNGEVKGWGANGNMASLALGESNTQKVYEPNKA-VVGIDN 380

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR-KVTTGQPMEVPINIP 337
           +V   CG TH+ AL  +G I+ +G    G LG    +   G P  V INIP
Sbjct: 381 VVHFGCGATHNFALLGNGEIYGWGWNFKGSLGRNDLQNNLGGPNPVSINIP 431



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 115/250 (46%), Gaps = 30/250 (12%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
            G  Y  G N +GQ G      D+   RI++ D +   R    +   Q      +S+ ++
Sbjct: 68  NGELYTVGRNNFGQLGTGISTGDNINDRIMKVDRI---RDIFSIHFNQ-----NNSMAIS 119

Query: 151 REGHVWTWG--------------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           + G V+TWG               P    D      P  + G+    + A G  H L L+
Sbjct: 120 QSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMGAYGFNHALILK 179

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            DG + A+G N  GQLG G+           PV  +    ++ + AG  HS ALT++GEV
Sbjct: 180 SDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEV 239

Query: 254 YGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           Y WGR ++G LG G      + + VP KV  L+   I Q++ G  H +ALT DG I+S+G
Sbjct: 240 YIWGRNQYGNLGNGIISPANTVQSVPVKVEGLS--KIKQIANGRDHILALTSDGKIYSWG 297

Query: 312 RGDHGRLGYG 321
               G+LG G
Sbjct: 298 LNASGQLGIG 307



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 46/277 (16%)

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
           K   G IL ++I             +++AGG HS  L   G ++T G+     +  Q+  
Sbjct: 37  KKSNGFILSQEIHF-------YFGTKLSAGGAHSGFLI-NGELYTVGR----NNFGQLGT 84

Query: 173 PV--------RVQGLEQVKLIAVGAFH---NLALQEDGALWAWGNNEYGQLGTGD--TQP 219
            +        R+  +++++ I    F+   ++A+ + G ++ WG N  GQLG G+  T P
Sbjct: 85  GISTGDNINDRIMKVDRIRDIFSIHFNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDP 144

Query: 220 --------RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND- 270
                   R  P  + G++   +   A G  H+  L  DG V  +G+   G+LG G+N+ 
Sbjct: 145 AKASDAGNRQPPTEIPGINNAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGENNL 202

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             +      VN++   +++QV  G  HS ALT +G ++ +GR  +G LG G         
Sbjct: 203 NRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEVYIWGRNQYGNLGNGIISPANTVQ 262

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            VP+ +       +G+ +    K +A G  H LA+  
Sbjct: 263 SVPVKV-------EGLSK---IKQIANGRDHILALTS 289


>gi|444725178|gb|ELW65756.1| putative E3 ubiquitin-protein ligase HERC4 [Tupaia chinensis]
          Length = 870

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 108/187 (57%), Gaps = 15/187 (8%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAA 239
           Q+  +A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +AA
Sbjct: 12  QIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAA 71

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           GG HS  LT  G ++GWGR + G+LG   ND++ + VP  +  L  + IV + CG  H+ 
Sbjct: 72  GGAHSFVLTLSGAIFGWGRNKFGQLGL--NDENDRYVPNLLKSLRSQKIVYICCGEDHTA 129

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           ALT++G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG 
Sbjct: 130 ALTKEGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACGR 177

Query: 360 RHTLAIV 366
           +HT A V
Sbjct: 178 QHTSAFV 184



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 17/242 (7%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPG-----DIKQISVPVRVQGLEQVKL--IAVG 188
           + QVA G  HS+ L++   V+ WGQ          D K+ + P  ++ L  +    +A G
Sbjct: 13  IVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGIPFMQVAAG 72

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H+  L   GA++ WG N++GQLG  D   R  P  ++ L    +V I  G  H+ ALT
Sbjct: 73  GAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALT 132

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHI 307
            +G V+ +G G +G+L  G N  S ++ P+KV  L G  + Q++CG  H+ A     G I
Sbjct: 133 KEGGVFTFGAGGYGQL--GHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRI 190

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEV-----PINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
           +SFG G +G+LG G       P  V     P N   P +     +  +  K +  GG  +
Sbjct: 191 YSFGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPPDVDS--EEYFCVKRIFSGGDQS 248

Query: 363 LA 364
            +
Sbjct: 249 FS 250



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 16/208 (7%)

Query: 68  VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV-I 126
           + +LS+ +IVQ A G +H LA+      + WG N+YGQ G   + K  T   L + ++ I
Sbjct: 5   IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGI 64

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQV 182
           P          QVAAGG HS VLT  G ++ WG+         D     VP  ++ L   
Sbjct: 65  P--------FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQ 116

Query: 183 KLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           K++ +  G  H  AL ++G ++ +G   YGQLG   T     P  V  L G  +  IA G
Sbjct: 117 KIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACG 176

Query: 241 GWHSTALT-DDGEVYGWGRGEHGRLGFG 267
             H++A     G +Y +G G +G+LG G
Sbjct: 177 RQHTSAFVPSSGRIYSFGLGGNGQLGTG 204



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           ++ LS + +V +A G +HS AL+   EV+ WG+ ++G+LG G  D   +  PQ +  L G
Sbjct: 5   IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI-DCKKQTSPQLIKSLLG 63

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
              +QV+ GG HS  LT  G IF +GR   G+LG
Sbjct: 64  IPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLG 97



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 34/222 (15%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT-----------------KTENIPSQVNALSNT 74
           +K+L   ++  V  G  +SLA+    +                  K +  P  + +L   
Sbjct: 5   IKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLLGI 64

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
             +Q A GG H   +   G  + WG N++GQ G   E       +L+   +  Q+     
Sbjct: 65  PFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKS--LRSQK----- 117

Query: 135 IVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGL--EQVKLIAV 187
            +  +  G  H+  LT+EG V+T     +GQ        +I+ P +V  L    V  IA 
Sbjct: 118 -IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRKVFELMGSIVTQIAC 175

Query: 188 GAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 176 GRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 217



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 17/91 (18%)

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG---RKVTTGQPMEVPI 334
           + +  L+   IVQV+CG  HS+AL++   +F +G+  +G+LG G   +K T+ Q ++  +
Sbjct: 3   RNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCKKQTSPQLIKSLL 62

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            IP  +              VA GG H+  +
Sbjct: 63  GIPFMQ--------------VAAGGAHSFVL 79



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           +I  WG  + GQLG+ +  +R    ++K+L   K+  +  G  ++ A+  +G        
Sbjct: 84  AIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG 143

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                    T  E  P +V  L  + + Q A G  H  A V   GR Y++G    GQ G
Sbjct: 144 GYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLG 202


>gi|392423407|ref|YP_006464398.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus acidiphilus SJ4]
 gi|391357873|gb|AFM43571.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Desulfosporosinus acidiphilus SJ4]
          Length = 1910

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 26/287 (9%)

Query: 45  AGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           AGS N+     +  T   + P QV+ LS   IV  + G    +A+   G  + WG    G
Sbjct: 355 AGS-NTFGQLGNNSTANSSTPVQVSGLS--SIVGVSAGDSTSMALRSDGIVFVWGRGTEG 411

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G        T          P +      +  ++ GG H + L ++G V+ WG  +  
Sbjct: 412 QLGNGTYSNSST----------PVQVPGLSNIVSISCGGYHCMALRKDGAVFVWGYGYN- 460

Query: 165 GDIKQ-----ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           G++        + P++VQ L ++  I  GA+H LA+  DG  W+WG N YGQLG G T  
Sbjct: 461 GELGNNTYSCSATPLQVQNLPKITCIGAGAYHCLAVAYDGTCWSWGYNNYGQLGDGTTTN 520

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           RS P+ V G++    V  + G +HS   + DG  YGWG   +G+LG GDN  S   VP  
Sbjct: 521 RSIPVQVIGITNAKFV--SGGMYHSVLQSTDGSFYGWGWNAYGQLGKGDNGDS--YVPAG 576

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           +   +G+ I  V+CG + ++ +  D  ++S G G  G+LG G   T+
Sbjct: 577 MVGWSGQSI--VACGYSTTI-IGNDNTVYSTGYGGDGQLGNGTNNTS 620



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 142/349 (40%), Gaps = 51/349 (14%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD------------- 56
           W +G +    +GNN        V+      +  V AG   S+A+  D             
Sbjct: 353 WSAGSNTFGQLGNNSTANSSTPVQVSGLSSIVGVSAGDSTSMALRSDGIVFVWGRGTEGQ 412

Query: 57  ---GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG-------GNEYGQC 106
              G     + P QV  LSN  IV  + GG+HC+A+   G  + WG       GN    C
Sbjct: 413 LGNGTYSNSSTPVQVPGLSN--IVSISCGGYHCMALRKDGAVFVWGYGYNGELGNNTYSC 470

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
              P +  +  +I          C        + AG  H + +  +G  W+WG       
Sbjct: 471 SATPLQVQNLPKI---------TC--------IGAGAYHCLAVAYDGTCWSWGYNNYGQL 513

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             G     S+PV+V G+   K ++ G +H++    DG+ + WG N YGQLG GD      
Sbjct: 514 GDGTTTNRSIPVQVIGITNAKFVSGGMYHSVLQSTDGSFYGWGWNAYGQLGKGDNGDSYV 573

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  + G SG ++V   A G+ +T + +D  VY  G G  G+LG G N+ S   V     L
Sbjct: 574 PAGMVGWSGQSIV---ACGYSTTIIGNDNTVYSTGYGGDGQLGNGTNNTSYTFV--STGL 628

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           +    I          +A+T D     +G+  +G+ G    V +  P +
Sbjct: 629 INTLRIASGPYDCRTVLAITADYSAHVWGQNAYGQYGDMNTVNSNTPTD 677



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 9/171 (5%)

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           +  ++ PV++   +    IA G+ H LA++ D  +W+ G+N +GQLG   T   S P+ V
Sbjct: 320 VTALAQPVQIDATKST--IAAGSGHTLAVRSDSTVWSAGSNTFGQLGNNSTANSSTPVQV 377

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GLS  ++V ++AG   S AL  DG V+ WGRG  G+LG G    SS   P +V  L+  
Sbjct: 378 SGLS--SIVGVSAGDSTSMALRSDGIVFVWGRGTEGQLGNGTYSNSST--PVQVPGLS-- 431

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           +IV +SCGG H +AL +DG +F +G G +G LG      +  P++V  N+P
Sbjct: 432 NIVSISCGGYHCMALRKDGAVFVWGYGYNGELGNNTYSCSATPLQVQ-NLP 481



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
           +AAG  H++ +  +  VW     T+GQ          S PV+V GL  +  ++ G   ++
Sbjct: 336 IAAGSGHTLAVRSDSTVWSAGSNTFGQ-LGNNSTANSSTPVQVSGLSSIVGVSAGDSTSM 394

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL+ DG ++ WG    GQLG G     S P+ V GLS +  V I+ GG+H  AL  DG V
Sbjct: 395 ALRSDGIVFVWGRGTEGQLGNGTYSNSSTPVQVPGLSNI--VSISCGGYHCMALRKDGAV 452

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           + WG G +G LG  +N  S    P +V  L    I  +  G  H +A+  DG  +S+G  
Sbjct: 453 FVWGYGYNGELG--NNTYSCSATPLQVQNL--PKITCIGAGAYHCLAVAYDGTCWSWGYN 508

Query: 314 DHGRLGYGRKVTTGQPMEV 332
           ++G+LG G       P++V
Sbjct: 509 NYGQLGDGTTTNRSIPVQV 527



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 121/322 (37%), Gaps = 89/322 (27%)

Query: 6   SIIAWGSGEDGQLGIG-NNEEREWVC--VVKALE----PYKVRSVVAGS---------RN 49
           ++ + G G DGQLG G NN    +V   ++  L     PY  R+V+A +         +N
Sbjct: 600 TVYSTGYGGDGQLGNGTNNTSYTFVSTGLINTLRIASGPYDCRTVLAITADYSAHVWGQN 659

Query: 50  SLAICDDGKTKTENIPSQVNALSNTKIVQAAIG-----GWHCLAVDDQGRAYAWGGNEYG 104
           +     D  T   N P+     ++TK +  A+        + + +   G  +AWG N   
Sbjct: 660 AYGQYGDMNTVNSNTPTD---YASTKNIAKALSVNQQNDQYSMLLKSDGSVWAWGNNGEY 716

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG-THSVV-LTREGHVWTWGQPW 162
           Q G               DI  P      ++   +  GG T++   +  +G VW WGQ  
Sbjct: 717 QLGIAGSNG--------TDIWTPTEVTTGMVDIAMPGGGYTYNTYGVKSDGTVWAWGQ-- 766

Query: 163 PPGDIKQISV-------------PVRVQGLEQVKLIAVG--AFHNL-------------- 193
                 +I V             PV+V  L  +  I+ G  A + +              
Sbjct: 767 ----CSEIYVGWGRNQTFEGEGPPVQVTALNNIASISTGNGALYFVKKDGTVCDINGNVI 822

Query: 194 ------------------ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
                              L+ DG +W++G +  G  G G   P S  + + GLSG  ++
Sbjct: 823 PGTANIIKASTSLYGMVTMLKSDGTVWSYGTDSSGNGGLGGASPTSNAVQIPGLSG--II 880

Query: 236 DIAAGGWHSTALTDDGEVYGWG 257
           DIA    +  AL  DG VY WG
Sbjct: 881 DIADNSNNVLALKSDGTVYHWG 902



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/370 (21%), Positives = 137/370 (37%), Gaps = 74/370 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----------- 54
           ++  WG G +G+LG  NN        ++     K+  + AG+ + LA+            
Sbjct: 451 AVFVWGYGYNGELG--NNTYSCSATPLQVQNLPKITCIGAGAYHCLAVAYDGTCWSWGYN 508

Query: 55  -----DDGKTKTENIPSQVNALSNTKIVQAAIG--------------GWHC---LAVDDQ 92
                 DG T   +IP QV  ++N K V   +               GW+    L   D 
Sbjct: 509 NYGQLGDGTTTNRSIPVQVIGITNAKFVSGGMYHSVLQSTDGSFYGWGWNAYGQLGKGDN 568

Query: 93  GRAYA------WGGNEYGQCGEEPERKDDTGRILRR------------DIVIPQRCAPKL 134
           G +Y       W G     CG       +   +               +       +  L
Sbjct: 569 GDSYVPAGMVGWSGQSIVACGYSTTIIGNDNTVYSTGYGGDGQLGNGTNNTSYTFVSTGL 628

Query: 135 IVRQVAAGGTH------SVVLTREGHVW---TWGQPWPPGDIKQIS--VPVRVQGLEQV- 182
           I     A G +      ++      HVW    +GQ    GD+  ++   P      + + 
Sbjct: 629 INTLRIASGPYDCRTVLAITADYSAHVWGQNAYGQY---GDMNTVNSNTPTDYASTKNIA 685

Query: 183 KLIAVGAF---HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           K ++V      +++ L+ DG++WAWGNN   QLG   +       P +  +G+  + +  
Sbjct: 686 KALSVNQQNDQYSMLLKSDGSVWAWGNNGEYQLGIAGSNGTDIWTPTEVTTGMVDIAMPG 745

Query: 240 GG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           GG  +++  +  DG V+ WG+     +G+G N       P  V + A  +I  +S G   
Sbjct: 746 GGYTYNTYGVKSDGTVWAWGQCSEIYVGWGRNQTFEGEGP-PVQVTALNNIASISTGNGA 804

Query: 298 SVALTRDGHI 307
              + +DG +
Sbjct: 805 LYFVKKDGTV 814


>gi|321471075|gb|EFX82049.1| hypothetical protein DAPPUDRAFT_210805 [Daphnia pulex]
          Length = 510

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 127/279 (45%), Gaps = 18/279 (6%)

Query: 43  VVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGN 101
           V A   NS      G T +   P ++ +L   KI   A G G H LA  D G  Y WG N
Sbjct: 21  VYAMGCNSSGCLGLGDTASALQPRKIESLCKKKIKGLAYGSGLHLLAFSDSGELYTWGYN 80

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
            Y Q G       +T   L   +V        +I  QV  G  H + LT EG V+ WGQ 
Sbjct: 81  TYSQLG-----NGNTNHTLTPSLVSGVLAGKTVI--QVGCGNHHCLALTSEGEVFAWGQN 133

Query: 161 ---PWPPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                  G     SVP RV    G  +V  IA G   ++AL +DG L+ WG N  G+LG 
Sbjct: 134 NGGQCGSGTTTGQSVPRRVTSGIGGHKVVAIACGQLTSMALLDDGDLYGWGYNGNGELGI 193

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           G+   +  P+ V  L  + +  I  G  H  ALTD GE+Y WG   +G+LG G   K+  
Sbjct: 194 GNNNNQHNPVRVSNLHKVFITQIVCGFAHCLALTDQGELYAWGANSYGQLGTG--YKTHH 251

Query: 275 MVPQKVNLLAGEDIVQVSCGGTH-SVALTRDGHIFSFGR 312
           + P  V    G+ +   +C  +H S A+  DG IF +G 
Sbjct: 252 LSPVIVAPELGKAVEIAACHLSHISAAMFHDGKIFMWGH 290



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 123/255 (48%), Gaps = 21/255 (8%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-GTH 145
           + VDD    YA G N  G  G       DT   L+    I   C  K  ++ +A G G H
Sbjct: 15  VTVDDD--VYAMGCNSSGCLG-----LGDTASALQPR-KIESLCKKK--IKGLAYGSGLH 64

Query: 146 SVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQED 198
            +  +  G ++TWG         G+      P  V G+   + V  +  G  H LAL  +
Sbjct: 65  LLAFSDSGELYTWGYNTYSQLGNGNTNHTLTPSLVSGVLAGKTVIQVGCGNHHCLALTSE 124

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           G ++AWG N  GQ G+G T  +S P  V  G+ G  +V IA G   S AL DDG++YGWG
Sbjct: 125 GEVFAWGQNNGGQCGSGTTTGQSVPRRVTSGIGGHKVVAIACGQLTSMALLDDGDLYGWG 184

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
              +G LG G+N+      P +V+ L    I Q+ CG  H +ALT  G ++++G   +G+
Sbjct: 185 YNGNGELGIGNNNNQHN--PVRVSNLHKVFITQIVCGFAHCLALTDQGELYAWGANSYGQ 242

Query: 318 LGYGRKVTTGQPMEV 332
           LG G K     P+ V
Sbjct: 243 LGTGYKTHHLSPVIV 257



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGW 256
           D  ++A G N  G LG GDT    QP  ++ L    +  +A G G H  A +D GE+Y W
Sbjct: 18  DDDVYAMGCNSSGCLGLGDTASALQPRKIESLCKKKIKGLAYGSGLHLLAFSDSGELYTW 77

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           G   + +LG G+ + +  + P  V+ +LAG+ ++QV CG  H +ALT +G +F++G+ + 
Sbjct: 78  GYNTYSQLGNGNTNHT--LTPSLVSGVLAGKTVIQVGCGNHHCLALTSEGEVFAWGQNNG 135

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+ G G   TTGQ +        PR    G+    +   +ACG   ++A+++
Sbjct: 136 GQCGSG--TTTGQSV--------PRRVTSGIGGHKVVA-IACGQLTSMALLD 176



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 74/180 (41%), Gaps = 30/180 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDD--- 56
           + S   + AWG    GQ G G    +     V   +  +KV ++  G   S+A+ DD   
Sbjct: 121 LTSEGEVFAWGQNNGGQCGSGTTTGQSVPRRVTSGIGGHKVVAIACGQLTSMALLDDGDL 180

Query: 57  -------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        G    ++ P +V+ L    I Q   G  HCLA+ DQG  YAWG N Y
Sbjct: 181 YGWGYNGNGELGIGNNNNQHNPVRVSNLHKVFITQIVCGFAHCLALTDQGELYAWGANSY 240

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG   +   + P   AP+L   V   A   +H S  +  +G ++ WG 
Sbjct: 241 GQLG--------TG--YKTHHLSPVIVAPELGKAVEIAACHLSHISAAMFHDGKIFMWGH 290


>gi|22795248|gb|AAN08220.1| putative chromosome condensation regulator [Oryza sativa Japonica
           Group]
 gi|108709680|gb|ABF97475.1| regulator of chromosome condensation, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 505

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 151/334 (45%), Gaps = 53/334 (15%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG---EEPERKDDTGRILRRDIVIPQR 129
           N + +  A G  H  AV   G  Y WG N++GQ G   EE  ++    + L  + V    
Sbjct: 59  NLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSVS 118

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP------------PGDIKQISV- 172
           C        VA    ++  ++R   +W WGQ     +P             G  +Q ++ 
Sbjct: 119 CGAHCTA-AVAEPRENNGTISRS-RLWVWGQNQGSDYPRLFWGAFAPNTASGATEQSTIT 176

Query: 173 -------PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                   +R   LE +  ++ GA H +AL EDG L AWG NEYGQLG G T    Q   
Sbjct: 177 CASSQFLSLRCLSLEVIHQVSCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGAR 236

Query: 226 VQGLSG---------LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK-M 275
           V              + +V ++ G +H+ A++++GEVY WG G  G+LG        K +
Sbjct: 237 VLNAYARFLDEAPELVKIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHCSLQSGDKEL 296

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK------VTTGQP 329
           +P++V  L    I  VSCGG HS A+T DG ++++G G  G+LG G +         G  
Sbjct: 297 IPRRVVALDRTVIRDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSD 356

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           M +  NIP       GV      +LV CG  HTL
Sbjct: 357 MLLR-NIPV-LVIPSGV------QLVTCGHSHTL 382



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 159/374 (42%), Gaps = 84/374 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           +AS  S+  WG+ + GQLG G  E  +    VKALE   V+SV  G+  + A+ +     
Sbjct: 75  VASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSVSCGAHCTAAVAEPRENN 134

Query: 56  --------------------------------DGKTKTENIPS------QVNALSNTKIV 77
                                            G T+   I         +  LS   I 
Sbjct: 135 GTISRSRLWVWGQNQGSDYPRLFWGAFAPNTASGATEQSTITCASSQFLSLRCLSLEVIH 194

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLI- 135
           Q + G  H +A+ + G   AWG NEYGQ G     +   G R+L          AP+L+ 
Sbjct: 195 QVSCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGARVLNAYARFLDE-APELVK 253

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-----------VPVRVQGLEQ--V 182
           + +V+ G  H+  ++  G V+TWG     G + Q+            +P RV  L++  +
Sbjct: 254 IVRVSCGEYHTAAISENGEVYTWGL----GSMGQLGHCSLQSGDKELIPRRVVALDRTVI 309

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-------------DTQPRSQPIPVQGL 229
           + ++ G  H+ A+ EDGAL+AWG    GQLG G             D   R+ P+ V   
Sbjct: 310 RDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLRNIPVLVIP- 368

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDI 288
           SG+ LV    G  H+     D  +YGWG   +G+     N+KS+    P  V+   GE +
Sbjct: 369 SGVQLV--TCGHSHTLVSMKDSRIYGWGYNSYGQ---AANEKSTYAWFPSPVDWCVGE-V 422

Query: 289 VQVSCGGTHSVALT 302
            +++ GG HS  LT
Sbjct: 423 RRLAAGGGHSAVLT 436



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 146/336 (43%), Gaps = 67/336 (19%)

Query: 81  IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ-- 138
           +GG     V  +   Y WG N  GQ   + +            + IP+   PKL   Q  
Sbjct: 7   LGGLRVAGVPTKSAIYLWGYNHSGQTARKGKEC---------HLRIPKSLPPKLFKWQDG 57

Query: 139 -------VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLI 185
                  VA G  H+  +  +G ++TWG         G  +    P +V+ LE   VK +
Sbjct: 58  KNLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSV 117

Query: 186 AVGAFHNLALQE---------DGALWAWGNNE---YGQLGTGDTQPR------------- 220
           + GA    A+ E            LW WG N+   Y +L  G   P              
Sbjct: 118 SCGAHCTAAVAEPRENNGTISRSRLWVWGQNQGSDYPRLFWGAFAPNTASGATEQSTITC 177

Query: 221 --SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG---DNDKSSKM 275
             SQ + ++ LS   +  ++ G  H  AL++DG +  WG  E+G+LG G   +  + +++
Sbjct: 178 ASSQFLSLRCLSLEVIHQVSCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGARV 237

Query: 276 VPQKVNLL--AGE--DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           +      L  A E   IV+VSCG  H+ A++ +G ++++G G  G+LG+   + +G    
Sbjct: 238 LNAYARFLDEAPELVKIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHC-SLQSGDKEL 296

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +P  + A       +DR  + + V+CGG H+ A+ E
Sbjct: 297 IPRRVVA-------LDRT-VIRDVSCGGVHSCAVTE 324



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 103/258 (39%), Gaps = 51/258 (19%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
           AWG  E GQLG G        C  + L+  +V +  A                +  P  V
Sbjct: 214 AWGYNEYGQLGRG--------CTSEGLQGARVLNAYA-------------RFLDEAPELV 252

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
                 KIV+ + G +H  A+ + G  Y WG    GQ G    +  D   I RR + +  
Sbjct: 253 ------KIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHCSLQSGDKELIPRRVVALD- 305

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----------------QPWPPGDIKQIS 171
               + ++R V+ GG HS  +T +G ++ WG                       D+   +
Sbjct: 306 ----RTVIRDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLRN 361

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +PV V     V+L+  G  H L   +D  ++ WG N YGQ     +     P PV    G
Sbjct: 362 IPVLVIP-SGVQLVTCGHSHTLVSMKDSRIYGWGYNSYGQAANEKSTYAWFPSPVDWCVG 420

Query: 232 LTLVDIAAGGWHSTALTD 249
             +  +AAGG HS  LTD
Sbjct: 421 -EVRRLAAGGGHSAVLTD 437


>gi|242004863|ref|XP_002423296.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis]
 gi|212506298|gb|EEB10558.1| hypothetical protein Phum_PHUM047680 [Pediculus humanus corporis]
          Length = 1229

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 131/279 (46%), Gaps = 23/279 (8%)

Query: 71   LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP--- 127
            L N KI      G+   A+   G  Y WG    G  G+ P        + R  +  P   
Sbjct: 819  LFNKKINSVLNCGYGHTALIRNGTIYTWGQTVKGCLGQGPT-------MSRHSLPSPISL 871

Query: 128  QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGL--EQ 181
              C  KL V  VA G  H+  LT  G V+ WG         GD+ +   P  +  L  E 
Sbjct: 872  LNCF-KLEVLYVACGKNHTTALTNNG-VYAWGCSKYGQLGLGDVYESPYPRLITSLANEN 929

Query: 182  VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
            V  ++ G FH LAL E G ++AWG   +GQLG G+   +  P+ V  L    + DIAAG 
Sbjct: 930  VITLSCGQFHTLALTEKGQVFAWGWGVHGQLGLGNIDDQRLPVCVNHLKDQVIKDIAAGH 989

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS-----KMVPQKVNLLAGEDIVQVSCGGT 296
             HS  L+D G+++ +G G  G+LG G+  KSS     + + +K+ L+A      +SCG  
Sbjct: 990  GHSLVLSDKGQIFSFGSGVFGQLGTGNTTKSSVPVLIQGISEKIILIATGYFHSISCGCH 1049

Query: 297  HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            HS  LT  G ++++GR   G+LG G       P ++  N
Sbjct: 1050 HSALLTVSGGVYTWGRSLDGQLGNGGHKEVTAPTQINEN 1088



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 61/277 (22%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
            +   + AWG  + GQLG+G+  E           PY                        
Sbjct: 893  TNNGVYAWGCSKYGQLGLGDVYE----------SPY------------------------ 918

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
              P  + +L+N  ++  + G +H LA+ ++G+ +AWG   +GQ G         G I  +
Sbjct: 919  --PRLITSLANENVITLSCGQFHTLALTEKGQVFAWGWGVHGQLG--------LGNIDDQ 968

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
             + +        +++ +AAG  HS+VL+ +G ++++G         G+  + SVPV +QG
Sbjct: 969  RLPVCVNHLKDQVIKDIAAGHGHSLVLSDKGQIFSFGSGVFGQLGTGNTTKSSVPVLIQG 1028

Query: 179  L-EQVKLIAVGAFHNLA--------LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            + E++ LIA G FH+++        L   G ++ WG +  GQLG G  +  + P  +   
Sbjct: 1029 ISEKIILIATGYFHSISCGCHHSALLTVSGGVYTWGRSLDGQLGNGGHKEVTAPTQIN-- 1086

Query: 230  SGLTLVDIAAGGWHSTALTDD--GEVYGWGRGEHGRL 264
                  D  + G   TA  +   G+++ WG    G++
Sbjct: 1087 ENTFKADCISCGCEFTAAQEKQTGKIFCWGSNSVGQV 1123


>gi|452825757|gb|EME32752.1| UVB-resistance protein UVR8-like / chromatin binding /
           guanyl-nucleotide exchange factor isoform 2 [Galdieria
           sulphuraria]
          Length = 663

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 155/338 (45%), Gaps = 41/338 (12%)

Query: 38  YKVRSVVAGSRNSLAICDDGKTKT--ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA 95
           +K++ V +   NS   C  G  ++  + IP+ V  L+N K+VQ   G  H L +  +G  
Sbjct: 58  HKLQGVFSFGDNSEGCCGLGSLESSRQPIPAHVATLANKKVVQVVCGHRHVLVLTVEGEV 117

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           Y++G N+ G+CG        TG      I  P    P   +     G +    L  EG +
Sbjct: 118 YSFGSNKLGECG--------TGVASSTPIPSP---VPITTINYDERGCS----LDDEGRI 162

Query: 156 WTWGQPWPPGDIKQISVPVRVQG----LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
               +  P    K+ S+PV  +     + +V  IA G   + AL +D  ++ WG NE   
Sbjct: 163 QIINERIP----KKASIPVYTKNGNTKIRRVVFIAAGYSTSFALTDDDRVYVWGRNESAA 218

Query: 212 LGTGDTQ-PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           LG G +      P+    LSGL LV+IA+GG H  ALT  G VYGWG   +G++GF    
Sbjct: 219 LGLGISGGCVHTPVMNPYLSGLCLVEIASGGVHGLALTKQGVVYGWGGNSYGQVGFPSGS 278

Query: 271 KSSKMV--PQKVNLLAGEDIVQVSCGGTHS-VALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
            +S +V  P  +  L       +SCG   S V  T+D  +++FG   HG LG G      
Sbjct: 279 GASSIVAYPTIITSLQCTHFSHISCGKDMSFVVSTQDDEVWAFGYNAHGELGLGHTNPVP 338

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +P +V            G+  + I + +A G RH LA+
Sbjct: 339 EPQQVV-----------GLQSKGIIQ-IAAGIRHVLAL 364



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 23/256 (8%)

Query: 73  NTKI---VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
           NTKI   V  A G     A+ D  R Y WG NE    G        +G  +   ++ P  
Sbjct: 183 NTKIRRVVFIAAGYSTSFALTDDDRVYVWGRNESAALG-----LGISGGCVHTPVMNPYL 237

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWG--------QPWPPGDIKQISVPVRVQGLEQ 181
               L+  ++A+GG H + LT++G V+ WG         P   G    ++ P  +  L+ 
Sbjct: 238 SGLCLV--EIASGGVHGLALTKQGVVYGWGGNSYGQVGFPSGSGASSIVAYPTIITSLQC 295

Query: 182 VKLIAVGAFHNLAL---QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
                +    +++     +D  +WA+G N +G+LG G T P  +P  V GL    ++ IA
Sbjct: 296 THFSHISCGKDMSFVVSTQDDEVWAFGYNAHGELGLGHTNPVPEPQQVVGLQSKGIIQIA 355

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
           AG  H  AL+    VY WG   +G+LG G  + S+ +  +++++L    ++QVS     S
Sbjct: 356 AGIRHVLALSSSELVYAWGENNYGQLGDGTVENSTLI--KEIHILRNRRVIQVSVSECAS 413

Query: 299 VALTRDGHIFSFGRGD 314
            A+T    +F +G  +
Sbjct: 414 FAVTIHAELFVWGSNE 429


>gi|449680679|ref|XP_002161042.2| PREDICTED: uncharacterized protein LOC100209924 [Hydra
           magnipapillata]
          Length = 809

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 174/388 (44%), Gaps = 52/388 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           I  WG+   G LG G   E  +  VV+AL    +R+V  G+ ++LA+  +G         
Sbjct: 375 IYTWGASPKGVLGHGEETEELFPRVVEALLGRDIRTVACGTEHTLAVSVNGEMFSWGCGR 434

Query: 58  --KTKTENI-----PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG--GNEYGQCGE 108
             K   +NI     P ++ A  N  I   +    H  +V + G  Y +G  G   G   E
Sbjct: 435 GGKLGLKNILDRYMPLKIGAFENVNITFVSCNELHSASVTESGELYTFGRSGPHLGYTTE 494

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
           +  RK    R  + D     +      ++ V+ G   ++ L  EG ++++G+        
Sbjct: 495 D--RKQAVPR--KVDFSTANK------IKAVSCGLEFTIALNSEGELYSFGKNDCGQLGA 544

Query: 165 GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           G    I  P  ++ L  V++  ++ G+ H  A+  +G +W WG+NE+GQLGT   +  + 
Sbjct: 545 GHFNDIEEPYLIKHLNGVRISKVSCGSKHVGAVTVNGDVWLWGSNEFGQLGTDKLE--AH 602

Query: 223 PIPVQGLSGL---TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV-PQ 278
            IP +  S      + DI  GG H+  L+  G VY +G G+ G+LG   N  S  +  P 
Sbjct: 603 DIPFEAPSTFWNEEIQDIKCGGSHTVVLSCTGVVYVFGNGQSGQLGVAVNQTSPYITNPC 662

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
            +++     I +V CG  H+ A+T  G ++++G G  GRLG+G      Q   VP  + +
Sbjct: 663 ILSMPNNTKIAKVDCGIEHTAAVTESGCLYTWGNGSRGRLGHGDH----QDRYVPTLVES 718

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                         + +ACG  HT A V
Sbjct: 719 LAYKQ--------VQSIACGAYHTAACV 738



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 149/318 (46%), Gaps = 26/318 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G+   E  P  V AL    I   A G  H LAV   G  ++WG    G+ G         
Sbjct: 389 GEETEELFPRVVEALLGRDIRTVACGTEHTLAVSVNGEMFSWGCGRGGKLG--------L 440

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP-----PGDIKQIS 171
             IL R + +       + +  V+    HS  +T  G ++T+G+  P       D KQ +
Sbjct: 441 KNILDRYMPLKIGAFENVNITFVSCNELHSASVTESGELYTFGRSGPHLGYTTEDRKQ-A 499

Query: 172 VPVRV--QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
           VP +V      ++K ++ G    +AL  +G L+++G N+ GQLG G      +P  ++ L
Sbjct: 500 VPRKVDFSTANKIKAVSCGLEFTIALNSEGELYSFGKNDCGQLGAGHFNDIEEPYLIKHL 559

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +G+ +  ++ G  H  A+T +G+V+ WG  E G+LG  D  ++  +  +  +    E+I 
Sbjct: 560 NGVRISKVSCGSKHVGAVTVNGDVWLWGSNEFGQLG-TDKLEAHDIPFEAPSTFWNEEIQ 618

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
            + CGG+H+V L+  G ++ FG G  G+LG     T+   +  P  +  P N        
Sbjct: 619 DIKCGGSHTVVLSCTGVVYVFGNGQSGQLGVAVNQTSPY-ITNPCILSMPNNTK------ 671

Query: 350 WIAKLVACGGRHTLAIVE 367
            IAK V CG  HT A+ E
Sbjct: 672 -IAK-VDCGIEHTAAVTE 687



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 104/264 (39%), Gaps = 70/264 (26%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + ++G  + GQLG G+  + E        EPY ++                   
Sbjct: 525 LNSEGELYSFGKNDCGQLGAGHFNDIE--------EPYLIKH------------------ 558

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                     L+  +I + + G  H  AV   G  + WG NE+GQ G +     D     
Sbjct: 559 ----------LNGVRISKVSCGSKHVGAVTVNGDVWLWGSNEFGQLGTDKLEAHD----- 603

Query: 121 RRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWG------------QPWPP 164
                IP   AP       ++ +  GG+H+VVL+  G V+ +G            Q  P 
Sbjct: 604 -----IPFE-APSTFWNEEIQDIKCGGSHTVVLSCTGVVYVFGNGQSGQLGVAVNQTSP- 656

Query: 165 GDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                I+ P  +      K+  V  G  H  A+ E G L+ WGN   G+LG GD Q R  
Sbjct: 657 ----YITNPCILSMPNNTKIAKVDCGIEHTAAVTESGCLYTWGNGSRGRLGHGDHQDRYV 712

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTA 246
           P  V+ L+   +  IA G +H+ A
Sbjct: 713 PTLVESLAYKQVQSIACGAYHTAA 736



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 18/185 (9%)

Query: 184 LIAVGAF-HNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           ++ +G F   ++++ED   ++ WG +  G LG G+      P  V+ L G  +  +A G 
Sbjct: 356 MLELGLFGDRVSVKEDACDIYTWGASPKGVLGHGEETEELFPRVVEALLGRDIRTVACGT 415

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            H+ A++ +GE++ WG G  G+LG    +   + +P K+      +I  VSC   HS ++
Sbjct: 416 EHTLAVSVNGEMFSWGCGRGGKLGL--KNILDRYMPLKIGAFENVNITFVSCNELHSASV 473

Query: 302 TRDGHIFSFGR-GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           T  G +++FGR G H  LGY    TT    +       PR        +   K V+CG  
Sbjct: 474 TESGELYTFGRSGPH--LGY----TTEDRKQ-----AVPRKVDFSTANK--IKAVSCGLE 520

Query: 361 HTLAI 365
            T+A+
Sbjct: 521 FTIAL 525



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G  ++++   G   +   D  ++Y WG    G LG G  +++ ++ P+ V  L G DI  
Sbjct: 353 GKLMLELGLFGDRVSVKEDACDIYTWGASPKGVLGHG--EETEELFPRVVEALLGRDIRT 410

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V+CG  H++A++ +G +FS+G G  G+LG    +    P+++         A + V+   
Sbjct: 411 VACGTEHTLAVSVNGEMFSWGCGRGGKLGLKNILDRYMPLKI--------GAFENVN--- 459

Query: 351 IAKLVACGGRHTLAIVE 367
               V+C   H+ ++ E
Sbjct: 460 -ITFVSCNELHSASVTE 475


>gi|375010994|ref|YP_004987982.1| Regulator of chromosome condensation (RCC1) repeat protein
           [Owenweeksia hongkongensis DSM 17368]
 gi|359346918|gb|AEV31337.1| Regulator of chromosome condensation (RCC1) repeat protein
           [Owenweeksia hongkongensis DSM 17368]
          Length = 440

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 37/305 (12%)

Query: 43  VVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           V    RN+     D   +  N P  V  L   KI+  A G  H LA+D+QGR +AWG N 
Sbjct: 39  VFTMGRNNYGQIGDSTYEDHNTPYHVERLPKIKII--ARGYDHSLAIDEQGRVWAWGRNN 96

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
           YGQ G            +  D   PQ          V  G  H+V L  +G VWTWG   
Sbjct: 97  YGQLGSA----------IPIDFNTPQLVVNHRDFISVEGGHWHTVALKEDGTVWTWGHNF 146

Query: 161 ------------PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
                        +P   +K+      +QG+  VK+++VG +H LAL ++G +++WG+N+
Sbjct: 147 YGELGDGTREHSQYPRSVVKKDKTT--LQGI--VKIVSVG-YHTLALDKNGEVYSWGSND 201

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           +G+LG      +     V+GL  +    IA G  HS A+ ++GE++ WG     ++    
Sbjct: 202 FGELGHFHNVIQHYAEKVEGLQNIK--SIAVGWHHSVAINENGELFMWGSDPSTQVREST 259

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
           +D  + +V  K++ L    +V+++CG  HS+A+   G ++ +G   +G LG    ++   
Sbjct: 260 SDHFNSIV--KIDSLP--PMVKIACGSWHSLAIDETGQVWGWGNNRYGMLGTKDTISYTY 315

Query: 329 PMEVP 333
           P ++P
Sbjct: 316 PKKIP 320



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 160/349 (45%), Gaps = 33/349 (9%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +   G    GQ+G    E+      V+ L   K++ +  G  +SLAI + G+        
Sbjct: 39  VFTMGRNNYGQIGDSTYEDHNTPYHVERLP--KIKIIARGYDHSLAIDEQGRVWAWGRNN 96

Query: 62  -----ENIPSQVNA----LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                  IP   N     +++   +    G WH +A+ + G  + WG N YG+ G+    
Sbjct: 97  YGQLGSAIPIDFNTPQLVVNHRDFISVEGGHWHTVALKEDGTVWTWGHNFYGELGDGTRE 156

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
                    R +V   +   + IV+ V+ G  H++ L + G V++WG     G++     
Sbjct: 157 HSQ----YPRSVVKKDKTTLQGIVKIVSVG-YHTLALDKNGEVYSWGSN-DFGELGHFHN 210

Query: 173 PV-----RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            +     +V+GL+ +K IAVG  H++A+ E+G L+ WG++   Q+    +   +  + + 
Sbjct: 211 VIQHYAEKVEGLQNIKSIAVGWHHSVAINENGELFMWGSDPSTQVRESTSDHFNSIVKID 270

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            L    +V IA G WHS A+ + G+V+GWG   +G LG    D  S   P+K+    G  
Sbjct: 271 SLP--PMVKIACGSWHSLAIDETGQVWGWGNNRYGMLG--TKDTISYTYPKKIPGFKG-- 324

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           I ++  G   S+A+ + G  ++FG    G+ G G       P ++ +++
Sbjct: 325 IEEIGGGCFQSLAIDKKGDFYTFGGNASGQQGQGDFAYIFVPTKLDLSL 373



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 33/242 (13%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAVG 188
           + V AG  H++VL ++G V+T G+     +  QI        + P  V+ L ++K+IA G
Sbjct: 21  QMVDAGNGHAIVLDKDGKVFTMGR----NNYGQIGDSTYEDHNTPYHVERLPKIKIIARG 76

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             H+LA+ E G +WAWG N YGQLG+    P     P   ++    + +  G WH+ AL 
Sbjct: 77  YDHSLAIDEQGRVWAWGRNNYGQLGSA--IPIDFNTPQLVVNHRDFISVEGGHWHTVALK 134

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSS---KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           +DG V+ WG   +G LG G  + S     +V +    L G  IV++   G H++AL ++G
Sbjct: 135 EDGTVWTWGHNFYGELGDGTREHSQYPRSVVKKDKTTLQG--IVKIVSVGYHTLALDKNG 192

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++S+G  D G LG+   V               ++  + V+     K +A G  H++AI
Sbjct: 193 EVYSWGSNDFGELGHFHNVI--------------QHYAEKVEGLQNIKSIAVGWHHSVAI 238

Query: 366 VE 367
            E
Sbjct: 239 NE 240


>gi|298714154|emb|CBJ33856.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 669

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 176/383 (45%), Gaps = 72/383 (18%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT--------------ENI--PSQVNALSNT 74
           VV+ L    V+ V  G +++  + D G+  T              E +  P ++ AL   
Sbjct: 264 VVQGLLGLSVQQVCCGGQHAAVLTDCGEIFTWGRGGFGRLGHGNREGLESPRRIEALEGI 323

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-APK 133
             VQ A G  +  AV   G  Y WG  E G+ G         G +  R    P R     
Sbjct: 324 PCVQVACGFAYTAAVTASGELYTWGAGENGRLG--------LGDVADRHT--PSRVEGLH 373

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG--DIKQISVPVRVQGLE-----QVKLIA 186
             V++V AG  HS VLTREG V+ +G+    G  D + +  P  +          V+ I+
Sbjct: 374 SKVKEVYAGSVHSCVLTREGTVYAFGKHEYTGHGDHEDVLDPRLIPTFSGGSGALVRQIS 433

Query: 187 VG--AFHNLALQEDGALWAWGNNEYGQLGTGD--TQPRSQ--------PIPVQGLSGLTL 234
           VG   +H +AL   G ++AWG+N   QLG G+  T PR+         P  V+ L G+ +
Sbjct: 434 VGPGGYHTMALTCQGQVYAWGHNRVAQLGIGNSFTVPRNMEGAYFLPSPQLVESLVGMNI 493

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK------------VNL 282
           V + AG  HS ALT DG++Y  GR   G+LG G    S +  PQ             ++ 
Sbjct: 494 VKVVAGWGHSAALTVDGQLYVCGRNYQGQLGLG----SPQGFPQNERGHPFQADFCLIDR 549

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L    I Q++CGG HSVA+  +G ++SFG G  G+LG+  + TT +  + P  + A ++ 
Sbjct: 550 LQHLKIKQIACGGEHSVAVAENGEVWSFGAGQKGQLGH--ESTTRE--DFPRLVQALKST 605

Query: 343 GDGVDRRWIAKLVACGGRHTLAI 365
                RR I   VACG   TL +
Sbjct: 606 -----RREIMH-VACGNNCTLVL 622



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 147/325 (45%), Gaps = 38/325 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  V  L    + Q   GG H   + D G  + WG   +G+ G       ++ R +    
Sbjct: 262 PVVVQGLLGLSVQQVCCGGQHAAVLTDCGEIFTWGRGGFGRLGHGNREGLESPRRIEALE 321

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
            IP  C       QVA G  ++  +T  G ++TWG         GD+     P RV+GL 
Sbjct: 322 GIP--CV------QVACGFAYTAAVTASGELYTWGAGENGRLGLGDVADRHTPSRVEGLH 373

Query: 181 -QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG-----LTL 234
            +VK +  G+ H+  L  +G ++A+G +EY   G GD +    P  +   SG     +  
Sbjct: 374 SKVKEVYAGSVHSCVLTREGTVYAFGKHEY--TGHGDHEDVLDPRLIPTFSGGSGALVRQ 431

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--------PQKVNLLAGE 286
           + +  GG+H+ ALT  G+VY WG     +LG G++    + +        PQ V  L G 
Sbjct: 432 ISVGPGGYHTMALTCQGQVYAWGHNRVAQLGIGNSFTVPRNMEGAYFLPSPQLVESLVGM 491

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG- 345
           +IV+V  G  HS ALT DG ++  GR   G+LG       G P   P N        D  
Sbjct: 492 NIVKVVAGWGHSAALTVDGQLYVCGRNYQGQLGL------GSPQGFPQNERGHPFQADFC 545

Query: 346 -VDRRWIAKL--VACGGRHTLAIVE 367
            +DR    K+  +ACGG H++A+ E
Sbjct: 546 LIDRLQHLKIKQIACGGEHSVAVAE 570



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 148/348 (42%), Gaps = 70/348 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           I  WG G  G+LG GN E  E    ++ALE      V  G   + A+   G+  T     
Sbjct: 292 IFTWGRGGFGRLGHGNREGLESPRRIEALEGIPCVQVACGFAYTAAVTASGELYTWGAGE 351

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                       + PS+V  L ++K+ +   G  H   +  +G  YA+G +EY       
Sbjct: 352 NGRLGLGDVADRHTPSRVEGL-HSKVKEVYAGSVHSCVLTREGTVYAFGKHEY------- 403

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL------IVRQVAA--GGTHSVVLTREGHVWTWGQPW 162
                TG     D++ P R  P        +VRQ++   GG H++ LT +G V+ WG   
Sbjct: 404 -----TGHGDHEDVLDP-RLIPTFSGGSGALVRQISVGPGGYHTMALTCQGQVYAWGHNR 457

Query: 163 PP--GDIKQISVPVRVQ---------------GLEQVKLIAVGAFHNLALQEDGALWAWG 205
               G     +VP  ++               G+  VK++A G  H+ AL  DG L+  G
Sbjct: 458 VAQLGIGNSFTVPRNMEGAYFLPSPQLVESLVGMNIVKVVA-GWGHSAALTVDGQLYVCG 516

Query: 206 NNEYGQLGTGDTQ-----PRSQPIP-----VQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
            N  GQLG G  Q      R  P       +  L  L +  IA GG HS A+ ++GEV+ 
Sbjct: 517 RNYQGQLGLGSPQGFPQNERGHPFQADFCLIDRLQHLKIKQIACGGEHSVAVAENGEVWS 576

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAG--EDIVQVSCGGTHSVAL 301
           +G G+ G+LG     +     P+ V  L     +I+ V+CG   ++ L
Sbjct: 577 FGAGQKGQLGHESTTRED--FPRLVQALKSTRREIMHVACGNNCTLVL 622



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 50/272 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + ++  +  WG+GE+G+LG+G+  +R     V+ L   KV+ V AGS +S  +  +G   
Sbjct: 338 VTASGELYTWGAGENGRLGLGDVADRHTPSRVEGLHS-KVKEVYAGSVHSCVLTREGTVY 396

Query: 61  T------------ENI--PSQVNALSN-----TKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                        E++  P  +   S       + +    GG+H +A+  QG+ YAWG N
Sbjct: 397 AFGKHEYTGHGDHEDVLDPRLIPTFSGGSGALVRQISVGPGGYHTMALTCQGQVYAWGHN 456

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGH 154
              Q G          R +     +P   +P+L+       + +V AG  HS  LT +G 
Sbjct: 457 RVAQLG--IGNSFTVPRNMEGAYFLP---SPQLVESLVGMNIVKVVAGWGHSAALTVDGQ 511

Query: 155 VWTWGQPW-------PPGDIKQ----------ISVPVRVQGLEQVKLIAVGAFHNLALQE 197
           ++  G+ +        P    Q            +  R+Q L ++K IA G  H++A+ E
Sbjct: 512 LYVCGRNYQGQLGLGSPQGFPQNERGHPFQADFCLIDRLQHL-KIKQIACGGEHSVAVAE 570

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
           +G +W++G  + GQLG   T     P  VQ L
Sbjct: 571 NGEVWSFGAGQKGQLGHESTTREDFPRLVQAL 602



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           S + P  V  L G  + QV CGG H+  LT  G IF++GRG  GRLG+G +    + +E 
Sbjct: 258 SDVSPVVVQGLLGLSVQQVCCGGQHAAVLTDCGEIFTWGRGGFGRLGHGNR----EGLES 313

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           P  I A     +G+        VACG  +T A+ 
Sbjct: 314 PRRIEAL----EGIP----CVQVACGFAYTAAVT 339


>gi|350402535|ref|XP_003486520.1| PREDICTED: hypothetical protein LOC100745121 [Bombus impatiens]
          Length = 1865

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 13/208 (6%)

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQIS-VPVRVQGLEQVKLIAV-- 187
            R + AG +H V L R G+V+TWG          P  ++  S   +    L +V++++V  
Sbjct: 820  RPLCAGFSH-VALIRNGNVYTWGSSVHGCLGIGPSVLRYGSPQAITFFWLMEVEVLSVSC 878

Query: 188  GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
            G  H LA+  +G ++AWG++++GQLG G     S P  +  L+   ++D  AG +HS AL
Sbjct: 879  GHCHTLAVTNNG-VYAWGSSQFGQLGLGKVLQCSTPELITSLAQEVIIDAVAGQYHSVAL 937

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            T DG V+ WG G HG+LG G+ DK  KM P  V  L G  I  ++ G  H++AL+ +G +
Sbjct: 938  TADGRVFTWGWGVHGQLGHGNTDK--KMTPTLVTSLLGTVIRYITAGHAHTLALSTEGIV 995

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            ++FG    G+LG G  V +  PM+V ++
Sbjct: 996  YAFGCNIFGQLGVGSNVKSSVPMKVSLS 1023



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 160/386 (41%), Gaps = 75/386 (19%)

Query: 6    SIIAWGSGEDGQLGIGNNEERE---------WVCVVKALEPYKVRSVVAGSRNSLAICDD 56
            ++  WGS   G LGIG +  R          W+  V+ L      SV  G  ++LA+ ++
Sbjct: 836  NVYTWGSSVHGCLGIGPSVLRYGSPQAITFFWLMEVEVL------SVSCGHCHTLAVTNN 889

Query: 57   G---------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
            G               K    + P  + +L+   I+ A  G +H +A+   GR + WG  
Sbjct: 890  GVYAWGSSQFGQLGLGKVLQCSTPELITSLAQEVIIDAVAGQYHSVALTADGRVFTWGWG 949

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-- 159
             +GQ G     K  T  ++   +          ++R + AG  H++ L+ EG V+ +G  
Sbjct: 950  VHGQLGHGNTDKKMTPTLVTSLL--------GTVIRYITAGHAHTLALSTEGIVYAFGCN 1001

Query: 160  ---QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
               Q     ++K  SVP++V   E++ LI  G FHNLA+     L+ WG +         
Sbjct: 1002 IFGQLGVGSNVKS-SVPMKVSLSERITLITTGYFHNLAVSYTNKLYIWGASPQVLRLQAQ 1060

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL---GFGDNDKSS 273
            TQ R++ +  + L     +D       S  + D  E       ++  +     G + +S 
Sbjct: 1061 TQKRTRILEQRDLKQFENIDEFEKVTDSANMNDTNEEVLENNAQNRNVQSKACGISTESR 1120

Query: 274  KMVP----QKVNL------------------LAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            K +     + VN+                  L   DI+++S G  H+  +T+DG ++ +G
Sbjct: 1121 KKLDNSCLKSVNVGSLEEAQTHLKPTIVDTSLVKGDIIRISAGCHHNALITKDGSLYMWG 1180

Query: 312  RGDHGRLGYGRKVTTGQPMEVPINIP 337
            R   G++G G +       EVPI  P
Sbjct: 1181 RNLDGQIGNGSR------REVPIPTP 1200



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/329 (23%), Positives = 126/329 (38%), Gaps = 73/329 (22%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
            +   + AWGS + GQLG+G   +     ++ +L    +   VAG  +S+A+  DG+    
Sbjct: 887  TNNGVYAWGSSQFGQLGLGKVLQCSTPELITSLAQEVIIDAVAGQYHSVALTADGRVFTW 946

Query: 59   ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        T  +  P+ V +L  T I     G  H LA+  +G  YA+G N +GQ 
Sbjct: 947  GWGVHGQLGHGNTDKKMTPTLVTSLLGTVIRYITAGHAHTLALSTEGIVYAFGCNIFGQL 1006

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
            G     K            +P + +    +  +  G  H++ ++    ++ WG    P  
Sbjct: 1007 GVGSNVKSS----------VPMKVSLSERITLITTGYFHNLAVSYTNKLYIWGA--SPQV 1054

Query: 167  IK-QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            ++ Q     R + LEQ  L     F N+   E     A  N+   ++   + Q R+    
Sbjct: 1055 LRLQAQTQKRTRILEQRDL---KQFENIDEFEKVTDSANMNDTNEEVLENNAQNRNVQSK 1111

Query: 226  VQGLS---------------------------GLTLVD----------IAAGGWHSTALT 248
              G+S                             T+VD          I+AG  H+  +T
Sbjct: 1112 ACGISTESRKKLDNSCLKSVNVGSLEEAQTHLKPTIVDTSLVKGDIIRISAGCHHNALIT 1171

Query: 249  DDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             DG +Y WGR   G++G G    S + VP
Sbjct: 1172 KDGSLYMWGRNLDGQIGNG----SRREVP 1196


>gi|301610125|ref|XP_002934599.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Xenopus
            (Silurana) tropicalis]
          Length = 4842

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 157/312 (50%), Gaps = 34/312 (10%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            IPS   + S     Q  I G +C   +   G   A G   YG+ G+     DD       
Sbjct: 4000 IPSGAGSFSQ---AQQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 4049

Query: 123  DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             + +       ++ + V + G+  HS+ LT  G V++WG         G+  +   P ++
Sbjct: 4050 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQI 4109

Query: 177  QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            + L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L GL +
Sbjct: 4110 EALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGLHI 4169

Query: 235  VDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
              +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+C
Sbjct: 4170 GQVACGLNHTLAVSADGSLVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVAC 4227

Query: 294  GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
            G   SVALT+DGH+++FG+     L  GR     +P  VP+ +      G  +D      
Sbjct: 4228 GTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQLVPVLL------GIFIDD----- 4276

Query: 354  LVACGGRHTLAI 365
             +A G  HTLA+
Sbjct: 4277 -IAVGAEHTLAL 4287



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 178/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPCFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          +++       Q      +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLI-------QGTLQGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  V+ L G+    + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVVEALQGMFTRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGVAIQQI----SAGTSHSLA 732



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            + WG   +GQ  E             R+++IP         +QV  G   + V+   G V
Sbjct: 3981 FLWGAGRHGQLAEAG-----------RNVMIPSGAGSFSQAQQVICGQNCTFVIQANGTV 4029

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4030 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4089

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4090 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGL 4149

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4150 GNT--SNKKLPERVTALEGLHIGQVACGLNHTLAVSADGSLVWAFGDGDYGKLGLGNSTA 4207

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4208 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4237



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 159/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4028 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4062

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4063 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4114

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4115 EEVV-----------QMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4163

Query: 179  LEQVKL--IAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE + +  +A G  H LA+  DG+L WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4164 LEGLHIGQVACGLNHTLAVSADGSLVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4223

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ V +L G  I  ++ G 
Sbjct: 4224 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQLVPVLLGIFIDDIAVGA 4281

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL+  G ++++G    G+LG G      +P  V
Sbjct: 4282 EHTLALSASGEVYAWGSNSEGQLGLGHTNHVREPTLV 4318



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 143/287 (49%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGTLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        +  R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFTRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4076 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 4135

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL    I Q A G  H LAV   G   +A+G  
Sbjct: 4136 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGLHIGQVACGLNHTLAVSADGSLVWAFGDG 4195

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4196 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4247

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P  V  L  + +  IAVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4248 RLIGLPEGRARNHNRPQLVPVLLGIFIDDIAVGAEHTLALSASGEVYAWGSNSEGQLGLG 4307

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4308 HTNHVREPTLVTALQGKNIRQISAGRCHSAAWT 4340



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGTLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  V+ L+ +  + +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVVEALQGMFTRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 18/179 (10%)

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           N  + E   ++ WG+N   QL  G  +   QP      S    ++  AG + +  ++ DG
Sbjct: 365 NPVVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAPCFSDAQTIE--AGQYCTFVISTDG 422

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC---GGTHSVALTRDGHIF 308
            V   G+G +GRLG GD++  S +  +K+       I +VS       H++A T +G +F
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTL--KKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVF 480

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           S+G GD+G+LG+G   T   P  +            G  +  +   V+ G RH+ A+ E
Sbjct: 481 SWGDGDYGKLGHGNSSTQKYPKLI-----------QGTLQGKVVVCVSAGYRHSAAVTE 528


>gi|350596671|ref|XP_003361480.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like, partial
            [Sus scrofa]
          Length = 2561

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 1658 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 1692

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 1693 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 1744

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 1745 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 1793

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 1794 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 1853

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 1854 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 1911

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 1912 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 1950



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 1611 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 1659

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 1660 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 1719

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 1720 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 1779

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 1780 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 1837

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 1838 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 1867



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 38/314 (12%)

Query: 64   IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +P+   + S     Q  I G +C   +   G   A G   YG+ G+      D   +L  
Sbjct: 1630 VPAAAPSFSQ---AQQVICGQNCTFVIQANGTVLACGEGSYGRLGQG---NSDDLHVLTV 1683

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPV 174
               +      +L+    + G  HS+ LT  G V++WG     GD  ++          P 
Sbjct: 1684 ISALQGFVVTQLVTSCGSDG--HSMALTESGEVFSWGD----GDYGKLGHGNSDRQRRPR 1737

Query: 175  RVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            +++ L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G 
Sbjct: 1738 QIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGY 1797

Query: 233  TLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             +  +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V
Sbjct: 1798 QIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKV 1855

Query: 292  SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            +CG   SVALT+DGH+++FG+     L  GR     +P ++P+          GV    +
Sbjct: 1856 ACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----V 1903

Query: 352  AKLVACGGRHTLAI 365
             + VA G  HTLA+
Sbjct: 1904 IEDVAVGAEHTLAL 1917



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 1706 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 1765

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 1766 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 1825

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++        + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 1826 DYGKLGLGNSTAKSSPQ--KVDVLC------GIGIKKVACGTQFSVALTKDGHVYTFGQD 1877

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 1878 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 1937

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 1938 HTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 1970


>gi|410988349|ref|XP_004000448.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Felis
           catus]
          Length = 993

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 26/315 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G     + +T
Sbjct: 70  GSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEGQLGLGDTEERNT 129

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
             ++            +  ++Q++AG   S  LT +G ++ WG          D+  + V
Sbjct: 130 FHLI-------SFFTSQHKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLKDVTNVCV 182

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ--PRSQPIPVQGLS 230
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG  +        P PV G+ 
Sbjct: 183 PQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPNQLLCNHRMPQPVPGIP 242

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +  + I  
Sbjct: 243 E-KVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETS-VPKVIEHVKDQKISS 299

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           +SCG  H+  +T  G +++FG G +G+LG G +  T Q +        P      +  R+
Sbjct: 300 ISCGENHTALITDIGLMYTFGDGRYGKLGLGLENFTNQFL--------PTLCSHFL--RF 349

Query: 351 IAKLVACGGRHTLAI 365
           IA+LV+CGG H L  
Sbjct: 350 IAQLVSCGGCHMLVF 364



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ V+T    ++      WGQ    G    +S P  V+ L  E+VK  A G  H
Sbjct: 40  LSCGDEHTAVVTGNKKLYMFGSNNWGQ-LGLGSKSTVSKPTCVKALKPEKVKFAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+D
Sbjct: 99  TLVSTEGGKVYAAGGNNEGQLGLGDTEERNTFHLISFFTSQHKIKQLSAGSNTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    D ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 159 GELFMWGDNSEGQIGL--KDVTNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGELYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG   ++     M  P+          G+  + +   VACGG HT+ + E
Sbjct: 215 GEPESGKLGLPNQLLCNHRMPQPV---------PGIPEKVVQ--VACGGGHTVVLTE 260



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 144/320 (45%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + GK        
Sbjct: 56  LYMFGSNNWGQLGLGSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + G  + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHLISFFTSQHKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
              KD T      ++ +PQ+      +  ++ G  HS  +T EG ++T+G+P       P
Sbjct: 174 --LKDVT------NVCVPQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLP 225

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRS 221
              +    +P  V G+ E+V  +A G  H + L E  A++ +G  ++GQLG G      S
Sbjct: 226 NQLLCNHRMPQPVPGIPEKVVQVACGGGHTVVLTEK-AVYTFGLGQFGQLGLGTFLFETS 284

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ +    +  I+ G  H+  +TD G +Y +G G +G+LG G  + +++ +P   +
Sbjct: 285 VPKVIEHVKDQKISSISCGENHTALITDIGLMYTFGDGRYGKLGLGLENFTNQFLPTLCS 344

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
                    VSCGG H +  
Sbjct: 345 HFLRFIAQLVSCGGCHMLVF 364



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 150/330 (45%), Gaps = 38/330 (11%)

Query: 49  NSLAICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           +S A+   GKT+  ENIPS+    ++   V  + G  H   V    + Y +G N +GQ G
Sbjct: 10  DSGAVFTFGKTRFAENIPSKFWFKNDIPTV-LSCGDEHTAVVTGNKKLYMFGSNNWGQLG 68

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----Q 160
                      +  +  V    C   L    V+  A G  H++V T  G V+  G     
Sbjct: 69  -----------LGSKSTVSKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYAAGGNNEG 117

Query: 161 PWPPGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD ++     +        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  D 
Sbjct: 118 QLGLGDTEERNTFHLISFFTSQHKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLKDV 177

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              +  +P Q   G  +  I+ G +HS  +T +GE+Y +G  E G+LG  +    +  +P
Sbjct: 178 T--NVCVPQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPNQLLCNHRMP 235

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
           Q V  +  E +VQV+CGG H+V LT    +++FG G  G+LG G  +             
Sbjct: 236 QPVPGIP-EKVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFL---------FETS 284

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            P+      D++  +  ++CG  HT  I +
Sbjct: 285 VPKVIEHVKDQKISS--ISCGENHTALITD 312


>gi|410336797|gb|JAA37345.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
          Length = 4854

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3993 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4041

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4042 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4101

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4102 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4161

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4162 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSVDGSMVWAFGDGDYGKLGLGNSTA 4219

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4220 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4249



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4040 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4074

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4075 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4126

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4127 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4175

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4176 LEGYQIGQVACGLNHTLAVSVDGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4235

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4236 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4293

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4294 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4330



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4023 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4075

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4076 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4135

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4136 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4195

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4196 VDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4253

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4254 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4299



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4088 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4147

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4148 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSVDGSMVWAFGDG 4207

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4208 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4259

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4260 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4319

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4320 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4352



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|397515719|ref|XP_003828093.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Pan
           paniscus]
          Length = 4798

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 3984 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4018

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4019 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4070

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4071 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4119

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4120 LEGYQIGQVACGLNHTLAVSVDGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4179

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4180 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4237

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4238 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4274



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3937 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 3985

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 3986 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4045

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4046 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4105

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4106 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSVDGSMVWAFGDGDYGKLGLGNSTA 4163

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4164 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4193



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 3967 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4019

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4020 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4079

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4080 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4139

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4140 VDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4197

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4198 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4243



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4032 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4091

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4092 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSVDGSMVWAFGDG 4151

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4152 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4203

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4204 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4263

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4264 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4296



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|332235891|ref|XP_003267138.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC1 [Nomascus leucogenys]
          Length = 4855

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 158/337 (46%), Gaps = 61/337 (18%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4046 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4080

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+   G     
Sbjct: 4081 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPXQGEE--- 4129

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
                         V Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4130 -------------VVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4176

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4177 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4236

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4237 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4294

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4295 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4331



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 149/297 (50%), Gaps = 34/297 (11%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4029 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4081

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQPWPPGDIKQI-----SVPVRVQGLEQVKLIAVGA 189
            + V + G+  HS+ LT  G V++WG     GD  ++         R    E+V  ++ G 
Sbjct: 4082 QLVTSCGSDGHSMALTESGEVFSWGD----GDYGKLGHGNSDRQRRPXQGEEVVQMSCGF 4137

Query: 190  FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
             H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++ 
Sbjct: 4138 KHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSA 4197

Query: 250  DGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH++
Sbjct: 4198 DGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVY 4255

Query: 309  SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            +FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4256 TFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4300



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 38/273 (13%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +      +  +  +V  +  G ++S  +  DGK
Sbjct: 4094 MALTESGEVFSWGDGDYGKLGHGNSDRQR-----RPXQGEEVVQMSCGFKHSAVVTSDGK 4148

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4149 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 4208

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4209 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4260

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4261 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4320

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4321 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4353



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score = 37.7 bits (86), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            WH   L    +VY WG G HG+L     +    MVP      +     QV CG   +  +
Sbjct: 3990 WH---LGGKCDVYLWGAGRHGQLAEAGRN---VMVPAAAPSFSQAQ--QVICGQNCTFVI 4041

Query: 302  TRDGHIFSFGRGDHGRLGYG 321
              +G + + G G +GRLG G
Sbjct: 4042 QANGTVLACGEGSYGRLGQG 4061


>gi|149701724|ref|XP_001494887.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC6 [Equus
           caballus]
          Length = 988

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/251 (32%), Positives = 125/251 (49%), Gaps = 26/251 (10%)

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQ 181
           P R    L V  V+ G  HS+ +   G V+ WG         G++K I+  P +++ L  
Sbjct: 39  PIRTLETLRVSLVSCGQEHSLAVCHRGRVFAWGAGSEGQLGTGEVKGINFTPKKIKTLTG 98

Query: 182 VKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVDIA 238
           +K+I V  G +H+LAL E G +++WG N  GQLG G   P +  P  V+ L G+ L  +A
Sbjct: 99  IKIIQVSCGDYHSLALSEGGQVFSWGKNSQGQLGLGKEFPSQDSPQRVRSLEGIPLAQVA 158

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           AGG HS AL+  G  +GWG    G+L   G+N       P+ +  L    ++ +SCG  H
Sbjct: 159 AGGAHSFALSVSGTSFGWGNNSAGQLALSGNNVPVQSYKPRSIGALRNLGVIYISCGYEH 218

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW--IAKLV 355
           +  LT++G +F+FG    G+LG+                P+ ++ G  +  R   +   +
Sbjct: 219 TAVLTQNGKVFTFGDNSCGQLGHS---------------PSAQDRGPQLVERIDGLVSQI 263

Query: 356 ACGGRHTLAIV 366
            CG  HTLA V
Sbjct: 264 DCGSYHTLAYV 274



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 131/276 (47%), Gaps = 36/276 (13%)

Query: 60  KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
           +T+N P  +  L   ++   + G  H LAV  +GR +AWG    GQ G        TG +
Sbjct: 33  ETKN-PEPIRTLETLRVSLVSCGQEHSLAVCHRGRVFAWGAGSEGQLG--------TGEV 83

Query: 120 LRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTW----------GQPWPPGDI 167
              +   P++      + + QV+ G  HS+ L+  G V++W          G+ +P  D 
Sbjct: 84  KGINFT-PKKIKTLTGIKIIQVSCGDYHSLALSEGGQVFSWGKNSQGQLGLGKEFPSQD- 141

Query: 168 KQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG-TGDTQP--RSQ 222
                P RV+ LE + L  +A G  H+ AL   G  + WGNN  GQL  +G+  P    +
Sbjct: 142 ----SPQRVRSLEGIPLAQVAAGGAHSFALSVSGTSFGWGNNSAGQLALSGNNVPVQSYK 197

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +  L  L ++ I+ G  H+  LT +G+V+ +G    G+LG   + +     PQ V  
Sbjct: 198 PRSIGALRNLGVIYISCGYEHTAVLTQNGKVFTFGDNSCGQLGHSPSAQDRG--PQLVER 255

Query: 283 LAGEDIVQVSCGGTHSVA-LTRDGHIFSFGRGDHGR 317
           + G  + Q+ CG  H++A +   G + SFGRG   R
Sbjct: 256 IDGL-VSQIDCGSYHTLAYVYTTGQVVSFGRGPSCR 290



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 128/297 (43%), Gaps = 56/297 (18%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT----------------KTENI-PSQVNALSNT 74
           ++ LE  +V  V  G  +SLA+C  G+                 K  N  P ++  L+  
Sbjct: 40  IRTLETLRVSLVSCGQEHSLAVCHRGRVFAWGAGSEGQLGTGEVKGINFTPKKIKTLTGI 99

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ--CGEEPERKDDTGRILRRDIVIPQRCAP 132
           KI+Q + G +H LA+ + G+ ++WG N  GQ   G+E   +D   R+         R   
Sbjct: 100 KIIQVSCGDYHSLALSEGGQVFSWGKNSQGQLGLGKEFPSQDSPQRV---------RSLE 150

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQ----------V 182
            + + QVAAGG HS  L+  G  + WG     G +      V VQ  +           V
Sbjct: 151 GIPLAQVAAGGAHSFALSVSGTSFGWGNN-SAGQLALSGNNVPVQSYKPRSIGALRNLGV 209

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
             I+ G  H   L ++G ++ +G+N  GQLG   +     P  V+ + GL +  I  G +
Sbjct: 210 IYISCGYEHTAVLTQNGKVFTFGDNSCGQLGHSPSAQDRGPQLVERIDGL-VSQIDCGSY 268

Query: 243 HSTA-LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK-------VNLLAGEDIVQV 291
           H+ A +   G+V  +GRG   R        SS   P+          LL+ ED+V V
Sbjct: 269 HTLAYVYTTGQVVSFGRGPSCR--------SSSTHPEAQIENFDISCLLSAEDLVDV 317



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 12/143 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P P++ L  L +  ++ G  HS A+   G V+ WG G  G+LG G+  K     P+K+  
Sbjct: 37  PEPIRTLETLRVSLVSCGQEHSLAVCHRGRVFAWGAGSEGQLGTGE-VKGINFTPKKIKT 95

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  I+QVSCG  HS+AL+  G +FS+G+   G+LG G++  +        + P    +
Sbjct: 96  LTGIKIIQVSCGDYHSLALSEGGQVFSWGKNSQGQLGLGKEFPSQ-------DSPQRVRS 148

Query: 343 GDGVDRRWIAKLVACGGRHTLAI 365
            +G+    +A+ VA GG H+ A+
Sbjct: 149 LEGIP---LAQ-VAAGGAHSFAL 167


>gi|398332633|ref|ZP_10517338.1| RCC1 domain-containing protein [Leptospira alexanderi serovar
           Manhao 3 str. L 60]
          Length = 527

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 150/349 (42%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 214 IAKNGRVYTWGNNAKGQLGIGNNNT----------NPANPRA--AGNRQP---------- 251

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  + +   V  A G  H L +   G   A+G N  GQ G      +     +
Sbjct: 252 ----PTLVPGIDDA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANNLNADSFSM 305

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 306 DPVAVVGLRD-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQ-S 359

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT-GDTQPRSQPIPVQGLS 230
           +PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG  G+  P   PIP Q L+
Sbjct: 360 IPVKVEGLPGIKQIANGRDHILALASDGRIYSWGLNASGQLGIGGNGSPNPTPIPTQVLN 419

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            L    + AGG  S ++   GEV GWG  G    L  G+ +      P K  ++  ++++
Sbjct: 420 ILNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTLKVYEPNKA-VVGIDNVI 478

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+  L  +G I+ +G    G LG    +   G P  V I +P
Sbjct: 479 HFGCGATHNFVLLGNGEIYGWGWNFKGSLGRQDLQANWGAPNPVSITLP 527



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 142/355 (40%), Gaps = 61/355 (17%)

Query: 43  VVAGSRNSLAICDDGKT---KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99
           V    RN+      G +   +  ++  ++N++SN  I        + +A+   GR Y WG
Sbjct: 167 VYTAGRNNFGQLGTGNSTGDENNDVIVKLNSISN--IFSIHFNQNNSMAIAKNGRVYTWG 224

Query: 100 GNEYGQCG-----EEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVL 149
            N  GQ G       P      G           R  P L+         A G  H+++L
Sbjct: 225 NNAKGQLGIGNNNTNPANPRAAG----------NRQPPTLVPGIDDAVMGAYGFNHALIL 274

Query: 150 TREGHVWTWGQPWPPGDIKQISV-------------PVRVQGLEQVKLIAVGAFHNLALQ 196
             +G V  +GQ     ++ Q+               PV V GL  V  +  G+ H+ AL 
Sbjct: 275 KSDGTVVAFGQ----NNVGQLGNGANNLNADSFSMDPVAVVGLRDVIQVIAGSEHSAALT 330

Query: 197 EDGALWAWGNNEYGQLGTG----DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           E+G ++ WG N+YG LG G        +S P+ V+GL G+    IA G  H  AL  DG 
Sbjct: 331 ENGEVYVWGRNQYGNLGNGRLSAANAAQSIPVKVEGLPGIK--QIANGRDHILALASDGR 388

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG- 311
           +Y WG    G+LG G N  S    P    +L   +   V  GGT S ++ + G +  +G 
Sbjct: 389 IYSWGLNASGQLGIGGNG-SPNPTPIPTQVLNILNASSVWAGGTQSFSILKSGEVKGWGA 447

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            G+   L  G   T        + +  P  A  G+D         CG  H   ++
Sbjct: 448 NGNTANLAIGETNT--------LKVYEPNKAVVGIDN---VIHFGCGATHNFVLL 491



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 20/180 (11%)

Query: 197 EDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           ++G ++  G N +GQLGTG+ T   +  + V+  S   +  I     +S A+  +G VY 
Sbjct: 163 KNGEVYTAGRNNFGQLGTGNSTGDENNDVIVKLNSISNIFSIHFNQNNSMAIAKNGRVYT 222

Query: 256 WGRGEHGRLGFGDNDKSSKMVP------QKVNLLAG-EDIVQVSCGGTHSVALTRDGHIF 308
           WG    G+LG G+N+ ++   P      Q   L+ G +D V  + G  H++ L  DG + 
Sbjct: 223 WGNNAKGQLGIGNNN-TNPANPRAAGNRQPPTLVPGIDDAVMGAYGFNHALILKSDGTVV 281

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEV-PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +FG+ + G+LG G          + P+ +         V  R + +++A G  H+ A+ E
Sbjct: 282 AFGQNNVGQLGNGANNLNADSFSMDPVAV---------VGLRDVIQVIA-GSEHSAALTE 331


>gi|114657534|ref|XP_001174017.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 isoform 1 [Pan
            troglodytes]
 gi|410226250|gb|JAA10344.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
 gi|410226252|gb|JAA10345.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
 gi|410263976|gb|JAA19954.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
 gi|410293838|gb|JAA25519.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
 gi|410293840|gb|JAA25520.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
 gi|410336799|gb|JAA37346.1| hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and
            RCC1 (CHC1)-like domain (RLD) 1 [Pan troglodytes]
          Length = 4861

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4000 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4048

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4049 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4108

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4109 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4168

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4169 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSVDGSMVWAFGDGDYGKLGLGNSTA 4226

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 4227 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 4256



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4047 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4081

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4082 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4133

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4134 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4182

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 4183 LEGYQIGQVACGLNHTLAVSVDGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 4242

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 4243 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 4300

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 4301 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 4337



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4030 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4082

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4083 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4142

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4143 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVS 4202

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+
Sbjct: 4203 VDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHV 4260

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 4261 YTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 4306



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4095 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4154

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 4155 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSVDGSMVWAFGDG 4214

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4215 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4266

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 4267 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 4326

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 4327 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 4359



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|383319179|ref|YP_005380020.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320549|gb|AFC99501.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 453

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 150/326 (46%), Gaps = 50/326 (15%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKT-----------------ENIPSQVNALSNTKIVQAAI 81
           KV ++ AG   SLA+ DDG                      + P  VN    T +   + 
Sbjct: 31  KVVAIDAGGHLSLALKDDGTVMAWGTMMGFLPNRGKPFFQSSTPVVVNI---TDVSAVSA 87

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           G +  L + + G  + WG NE+G+ G+    +           + P + A    +  ++ 
Sbjct: 88  GNFFVLFLKNDGTVWGWGDNEFGELGDGTNEETS---------LEPVQVAGLHDIIAIST 138

Query: 142 GGTHSVVLTREGHVWTWGQPWPPGDIKQISV-------PVRVQGLEQVKLIAVGAFHNLA 194
            GTH + L R+G VW WG  W       I         PV+V GL  +K+I+ G   ++A
Sbjct: 139 SGTHCLALRRDGTVWAWG--WNVAGQLGIGTTSEGEYTPVQVPGLSDIKIISAGYQCSMA 196

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPI--PVQGLSGLTLVDIAAG-GWHSTALTDDG 251
           + +DG LWAWG+N  G+LG G T  R  PI  P+       ++D+AA  G H+ AL  DG
Sbjct: 197 IDKDGRLWAWGSNGRGKLGDGTTITRLYPIQVPID-----DVIDVAASEGAHTLALKKDG 251

Query: 252 EVYGWGRGEHGRLGF--GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            V+ WG  +   LGF  G +  S K     V +   + +V VS   ++S+AL  DG ++ 
Sbjct: 252 TVWAWGWNQENELGFVSGSSVNSVKECHTPVMVKGVDSVVSVSTTDSNSIALRSDGTVWI 311

Query: 310 FGRGDHGRLGYG--RKVTTGQPMEVP 333
           +G G  GRLG G      +  P +VP
Sbjct: 312 WGNGQQGRLGNGALYGADSATPQQVP 337



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 137/299 (45%), Gaps = 58/299 (19%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAICDDGK- 58
           ++  WG  E G+LG G NEE        +LEP +V       ++     + LA+  DG  
Sbjct: 100 TVWGWGDNEFGELGDGTNEE-------TSLEPVQVAGLHDIIAISTSGTHCLALRRDGTV 152

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGN 101
                           ++ E  P QV  LS+ KI+ A   G+ C +A+D  GR +AWG N
Sbjct: 153 WAWGWNVAGQLGIGTTSEGEYTPVQVPGLSDIKIISA---GYQCSMAIDKDGRLWAWGSN 209

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
             G+ G+        G  + R  + P +     ++   A+ G H++ L ++G VW WG  
Sbjct: 210 GRGKLGD--------GTTITR--LYPIQVPIDDVIDVAASEGAHTLALKKDGTVWAWG-- 257

Query: 162 W------------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
           W                +K+   PV V+G++ V  ++    +++AL+ DG +W WGN + 
Sbjct: 258 WNQENELGFVSGSSVNSVKECHTPVMVKGVDSVVSVSTTDSNSIALRSDGTVWIWGNGQQ 317

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           G+LG G         P Q      +V IA G  H  A+T DG VY WG  + G++G G+
Sbjct: 318 GRLGNGALYGADSATPQQVPGLENVVAIAGGSAHIMAMTGDGSVYAWGDNQGGQIGNGE 376



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 27/245 (11%)

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-----PWPPGDIKQISVPVRVQGLEQ 181
           P   A   +V  + AGG  S+ L  +G V  WG      P       Q S PV V  +  
Sbjct: 24  PVSAASSKVV-AIDAGGHLSLALKDDGTVMAWGTMMGFLPNRGKPFFQSSTPVVVN-ITD 81

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAAG 240
           V  ++ G F  L L+ DG +W WG+NE+G+LG G  +  S +P+ V GL    ++ I+  
Sbjct: 82  VSAVSAGNFFVLFLKNDGTVWGWGDNEFGELGDGTNEETSLEPVQVAGLH--DIIAISTS 139

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
           G H  AL  DG V+ WG    G+LG G   +  +  P +V  L+  DI  +S G   S+A
Sbjct: 140 GTHCLALRRDGTVWAWGWNVAGQLGIGTTSE-GEYTPVQVPGLS--DIKIISAGYQCSMA 196

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           + +DG ++++G    G+LG G  +T   P++VPI+        D +D      + A  G 
Sbjct: 197 IDKDGRLWAWGSNGRGKLGDGTTITRLYPIQVPID--------DVID------VAASEGA 242

Query: 361 HTLAI 365
           HTLA+
Sbjct: 243 HTLAL 247



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 34/278 (12%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           +++K+V    GG   LA+ D G   AWG       G  P R               Q   
Sbjct: 28  ASSKVVAIDAGGHLSLALKDDGTVMAWG----TMMGFLPNRGKP----------FFQSST 73

Query: 132 PKLI----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISV-PVRVQGLEQV 182
           P ++    V  V+AG    + L  +G VW WG         G  ++ S+ PV+V GL  +
Sbjct: 74  PVVVNITDVSAVSAGNFFVLFLKNDGTVWGWGDNEFGELGDGTNEETSLEPVQVAGLHDI 133

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGG 241
             I+    H LAL+ DG +WAWG N  GQLG G T +    P+ V GLS + +  I+AG 
Sbjct: 134 IAISTSGTHCLALRRDGTVWAWGWNVAGQLGIGTTSEGEYTPVQVPGLSDIKI--ISAGY 191

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG-GTHSVA 300
             S A+  DG ++ WG    G+L  GD    +++ P +V +   +D++ V+   G H++A
Sbjct: 192 QCSMAIDKDGRLWAWGSNGRGKL--GDGTTITRLYPIQVPI---DDVIDVAASEGAHTLA 246

Query: 301 LTRDGHIFSFGRGDHGRLGY--GRKVTTGQPMEVPINI 336
           L +DG ++++G      LG+  G  V + +    P+ +
Sbjct: 247 LKKDGTVWAWGWNQENELGFVSGSSVNSVKECHTPVMV 284


>gi|444911273|ref|ZP_21231448.1| hypothetical protein D187_02792 [Cystobacter fuscus DSM 2262]
 gi|444718031|gb|ELW58847.1| hypothetical protein D187_02792 [Cystobacter fuscus DSM 2262]
          Length = 476

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 141/279 (50%), Gaps = 30/279 (10%)

Query: 68  VNALSNTKIVQA--------AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
           V+A  NT + +         A G  H  A+ D G+ + WGGN+ GQ G     + D G  
Sbjct: 107 VDAAGNTGVAEVRFRWGTSLAAGLSHSAALRD-GQLFTWGGNDAGQLG-----RPDAGNT 160

Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI---KQISVPVRV 176
               + +P   AP   VR V AG + ++VL  EG  W WG   P G +   K+ S P RV
Sbjct: 161 -PHPLPVPG-LAP---VRAVVAGPSSTLVLLEEGGAWAWGT-LPRGLVPARKEPSTPTRV 214

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           +    V  +A+GA H L L  DG + A G+N  GQLG G T P   P  V GLS   +V 
Sbjct: 215 ESPGPVVDVALGASHALLLLADGTVLAVGSNTKGQLGLGSTAPVEAPTRVPGLS--DIVR 272

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +A G  HS AL  DG V+ WG    G+LG G+ D +    P +V  L    +V ++ G  
Sbjct: 273 VAVGTAHSVALRRDGTVFTWGDNGDGQLGNGELDATPHPEPLEVAHLG--QVVDIATGRG 330

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTG---QPMEV 332
           H +AL  DG + ++G G  G+LG+G+    G   QP++V
Sbjct: 331 HVLALGADGRVRAWGLGMSGQLGHGKSGMLGSRAQPVDV 369



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 141/332 (42%), Gaps = 59/332 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG  + GQLG  +         V  L P  VR+VVAG  ++L + ++G         
Sbjct: 141 LFTWGGNDAGQLGRPDAGNTPHPLPVPGLAP--VRAVVAGPSSTLVLLEEGG-------- 190

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                       A+AWG    G     P RK+ +          
Sbjct: 191 ----------------------------AWAWGTLPRGLV---PARKEPS---------T 210

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQV 182
           P R      V  VA G +H+++L  +G V   G         G    +  P RV GL  +
Sbjct: 211 PTRVESPGPVVDVALGASHALLLLADGTVLAVGSNTKGQLGLGSTAPVEAPTRVPGLSDI 270

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG--DTQPRSQPIPVQGLSGLTLVDIAAG 240
             +AVG  H++AL+ DG ++ WG+N  GQLG G  D  P  +P+ V  L    +VDIA G
Sbjct: 271 VRVAVGTAHSVALRRDGTVFTWGDNGDGQLGNGELDATPHPEPLEVAHLG--QVVDIATG 328

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H  AL  DG V  WG G  G+LG G +        Q V++L   D V VS       A
Sbjct: 329 RGHVLALGADGRVRAWGLGMSGQLGHGKSGMLGSRA-QPVDVLDVTDAVAVSALNNVGFA 387

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           L+  G ++++G+  + +LG G      +P++V
Sbjct: 388 LSASGTLWAWGQNSNAQLGDGSLAERPRPIQV 419



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 103/247 (41%), Gaps = 37/247 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++A GS   GQLG+G+    E    V  L    +  V  G+ +S+A+  DG   T    
Sbjct: 238 TVLAVGSNTKGQLGLGSTAPVEAPTRVPGLS--DIVRVAVGTAHSVALRRDGTVFTWGDN 295

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                          P  +      ++V  A G  H LA+   GR  AWG    GQ G  
Sbjct: 296 GDGQLGNGELDATPHPEPLEVAHLGQVVDIATGRGHVLALGADGRVRAWGLGMSGQLGH- 354

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV--VLTREGHVWTWGQ----PWP 163
                 +G +  R     Q      +   VA    ++V   L+  G +W WGQ       
Sbjct: 355 ----GKSGMLGSRA----QPVDVLDVTDAVAVSALNNVGFALSASGTLWAWGQNSNAQLG 406

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT---GDTQPR 220
            G + +   P++VQGL  V+ +A G+ H LA   DG   AWG N  GQLG     +  PR
Sbjct: 407 DGSLAERPRPIQVQGLGPVRAVAAGSLHTLACTRDGDCLAWGANHDGQLGASTPSEGSPR 466

Query: 221 S-QPIPV 226
           S  P+PV
Sbjct: 467 SPTPLPV 473



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 102/245 (41%), Gaps = 60/245 (24%)

Query: 143 GTHSVVLTREGHVWTWGQPWPPGDIKQISV--PVRVQGLEQVKL-----IAVGAFHNLAL 195
           GT SV  T        G+P P  +  ++         G+ +V+      +A G  H+ AL
Sbjct: 77  GTPSVDFTPSATFTLEGRPLPGTNHLRVEAVDAAGNTGVAEVRFRWGTSLAAGLSHSAAL 136

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS------------------------- 230
           + DG L+ WG N+ GQLG  D      P+PV GL+                         
Sbjct: 137 R-DGQLFTWGGNDAGQLGRPDAGNTPHPLPVPGLAPVRAVVAGPSSTLVLLEEGGAWAWG 195

Query: 231 ----GLT-----------------LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
               GL                  +VD+A G  H+  L  DG V   G    G+LG G  
Sbjct: 196 TLPRGLVPARKEPSTPTRVESPGPVVDVALGASHALLLLADGTVLAVGSNTKGQLGLGST 255

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT--G 327
             +    P +V  L+  DIV+V+ G  HSVAL RDG +F++G    G+LG G    T   
Sbjct: 256 --APVEAPTRVPGLS--DIVRVAVGTAHSVALRRDGTVFTWGDNGDGQLGNGELDATPHP 311

Query: 328 QPMEV 332
           +P+EV
Sbjct: 312 EPLEV 316


>gi|344237346|gb|EGV93449.1| putative E3 ubiquitin-protein ligase HERC3 [Cricetulus griseus]
          Length = 461

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 110/208 (52%), Gaps = 33/208 (15%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 7   VAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRV 66

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAG 285
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  
Sbjct: 67  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRT 123

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +V +SCG  H+  LT+ G +F+FG G  G+LG+G                   +  D 
Sbjct: 124 QKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHG-------------------SMNDE 164

Query: 346 VDRRWIAKL-------VACGGRHTLAIV 366
           V+ R + +L       +ACG +HTLA V
Sbjct: 165 VNPRRVLELMGSEVTQIACGRQHTLAFV 192



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 19/217 (8%)

Query: 132 PKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL 179
           P+LI       + QV+ G  H + L  +G  +TWG     Q     +    + P RV+ L
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSL 69

Query: 180 EQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           E + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V+ L    +V I
Sbjct: 70  EGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYI 129

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           + G  H+  LT  G V+ +G G  G+LG G  ND+ +   P++V  L G ++ Q++CG  
Sbjct: 130 SCGEEHTAVLTKSGGVFTFGAGSCGQLGHGSMNDEVN---PRRVLELMGSEVTQIACGRQ 186

Query: 297 HSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           H++A     G I++FG G  G+LG G       P  V
Sbjct: 187 HTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 223



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E    T       
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTS------ 62

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D K    P  V+
Sbjct: 63  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK 119

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G    GQLG G       P  V  L G  + 
Sbjct: 120 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHGSMNDEVNPRRVLELMGSEVT 179

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 212



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGK-EFPSQTSPQRVRS 68

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  + QV+ GG HS AL+  G +F +G  + G+LG   +     P  V +        
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL-------- 120

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                R      ++CG  HT  + +
Sbjct: 121 ----LRTQKVVYISCGEEHTAVLTK 141



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 95/225 (42%), Gaps = 38/225 (16%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT------------ENIPSQ-----VNALSN 73
           +++ L    +  V  G+ + LA+  DG+  T            +  PSQ     V +L  
Sbjct: 12  LIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEG 71

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG---RILRRDIVIPQRC 130
             + Q A GG H  A+   G  + WG N  GQ G   E+  ++    ++LR   V+   C
Sbjct: 72  IPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISC 131

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKL 184
                      G  H+ VLT+ G V+T+G         G +     P RV  L   +V  
Sbjct: 132 -----------GEEHTAVLTKSGGVFTFGAGSCGQLGHGSMNDEVNPRRVLELMGSEVTQ 180

Query: 185 IAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 181 IACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 225



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 17/96 (17%)

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV---TTGQP 329
           S  VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++    T+ Q 
Sbjct: 6   SVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQR 65

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +     IP  +              VA GG H+ A+
Sbjct: 66  VRSLEGIPLAQ--------------VAAGGAHSFAL 87



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 39/195 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 92  AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 151

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCGE 108
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G 
Sbjct: 152 SCGQLGHGSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGT 211

Query: 109 ---------EPER---KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
                     P +      +G++  R      R     +V+Q+ +GG  + VL       
Sbjct: 212 GHTCNVKCPSPVKGYWAAHSGQLSARADRFKYR-----VVKQIFSGGDQTFVLCS----- 261

Query: 157 TWGQPWPPGDIKQIS 171
           T+    P  D + ++
Sbjct: 262 TYENSSPAVDFRTVN 276


>gi|229442455|gb|AAI72910.1| guanine nucleotide exchange factor p532 [synthetic construct]
          Length = 2441

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 161/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 1627 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 1661

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 1662 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 1713

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 1714 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 1762

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  +  L G+ + 
Sbjct: 1763 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIK 1822

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 1823 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGA 1880

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL  +G ++++G    G+LG G      +P  V
Sbjct: 1881 EHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLV 1917



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 1580 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 1628

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 1629 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 1688

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 1689 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 1748

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 1749 GNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTA 1806

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P ++ +        G G+      K VACG + ++A+ +
Sbjct: 1807 KSSPQKIDV------LCGIGI------KKVACGTQFSVALTK 1836



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 150/296 (50%), Gaps = 27/296 (9%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+      D   +L     +      +L+ 
Sbjct: 1610 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG---NSDDLHVLTVISALQGFVVTQLVT 1666

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAF 190
               + G  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G  
Sbjct: 1667 SCGSDG--HSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFK 1724

Query: 191  HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
            H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++ D
Sbjct: 1725 HSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSAD 1784

Query: 251  GE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            G  V+ +G G++G+LG G++  ++K  PQK+++L G  I +V+CG   SVALT+DGH+++
Sbjct: 1785 GSMVWAFGDGDYGKLGLGNS--TAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYT 1842

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            FG+     L  GR     +P ++P+          GV    I + VA G  HTLA+
Sbjct: 1843 FGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----IIEDVAVGAEHTLAL 1886



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 1675 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 1734

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                            T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 1735 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 1794

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G      + T +   + I +   C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 1795 DYGKLG----LGNSTAKSSPQKIDV--LCG--IGIKKVACGTQFSVALTKDGHVYTFGQD 1846

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P ++  L  V +  +AVGA H LAL  +G ++AWG+N  GQLG G
Sbjct: 1847 RLIGLPEGRARNHNRPQQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLG 1906

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V GL G  +  I+AG  HS A T
Sbjct: 1907 HTNHVREPTLVTGLQGKNVRQISAGRCHSAAWT 1939


>gi|444912395|ref|ZP_21232559.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444716977|gb|ELW57814.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 391

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 125/254 (49%), Gaps = 20/254 (7%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H LA+   G  +AWG N  G+ G+        G  L R    P +      V  VAAG  
Sbjct: 49  HTLALRYDGTVWAWGENGNGELGD--------GTTLSRS--TPAQVPGLSGVLAVAAGRN 98

Query: 145 HSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
           HS+VL  +G VW WG         G      VP++V GL  VK IA  A+ + AL  DG 
Sbjct: 99  HSLVLRVDGTVWAWGGNSSGQLGNGTTTSSLVPLQVPGLGGVKAIAAVAYSSFALLSDGT 158

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           + AWG N +G LG G T  R  P+PV  LS    V IAAGG H+ A+  +G V GWG   
Sbjct: 159 VRAWGRNGFGVLGDGTTSDRYTPVPVLNLS--QAVSIAAGGDHAFAVLANGTVMGWGYNY 216

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G++  GD    S+  P  V  L G   V V  G   SVA   DG ++S+G    G+LG 
Sbjct: 217 FGQV--GDGTTISRTAPVPVKNLTGVSAVSV-MGSNSSVARKSDGTVWSWGDNWVGQLGV 273

Query: 321 GRKVTTG-QPMEVP 333
           G  V+T   P++VP
Sbjct: 274 GSAVSTSPTPVQVP 287



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 128/298 (42%), Gaps = 42/298 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--------------RNSL 51
           ++ AWG    GQLG G          V  L   K  + VA S              RN  
Sbjct: 108 TVWAWGGNSSGQLGNGTTTSSLVPLQVPGLGGVKAIAAVAYSSFALLSDGTVRAWGRNGF 167

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
            +  DG T     P  V  L+ ++ V  A GG H  AV   G    WG N +GQ G+   
Sbjct: 168 GVLGDGTTSDRYTP--VPVLNLSQAVSIAAGGDHAFAVLANGTVMGWGYNYFGQVGD--- 222

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
                G  + R   +P +    +    V  G   SV    +G VW+WG  W    + Q+ 
Sbjct: 223 -----GTTISRTAPVPVKNLTGVSAVSVM-GSNSSVARKSDGTVWSWGDNW----VGQLG 272

Query: 172 V---------PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           V         PV+V G+     I  G  H +AL  DG L  WG N YGQLG G T+ R  
Sbjct: 273 VGSAVSTSPTPVQVPGITTAVAIQSGVGHGMALLADGTLKGWGYNLYGQLGDGTTRTRYT 332

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           P+ V GL+   +V +AAG  HS A+T DG+V+ WG    G L  GD   + ++ P  V
Sbjct: 333 PVLVPGLA--QVVHLAAGTLHSLAVTADGKVWAWGDNAQGTL--GDGTTTQRLAPVTV 386



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 158/353 (44%), Gaps = 41/353 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG   +G+LG G    R     V  L    V +V AG  +SL +            
Sbjct: 58  TVWAWGENGNGELGDGTTLSRSTPAQVPGLS--GVLAVAAGRNHSLVLRVDGTVWAWGGN 115

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 +G T +  +P QV  L   K + A    +   A+   G   AWG N +G  G+ 
Sbjct: 116 SSGQLGNGTTTSSLVPLQVPGLGGVKAIAAV--AYSSFALLSDGTVRAWGRNGFGVLGD- 172

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGDI 167
                  G    R   +P     + +   +AAGG H+  +   G V  WG  +    GD 
Sbjct: 173 -------GTTSDRYTPVPVLNLSQAV--SIAAGGDHAFAVLANGTVMGWGYNYFGQVGDG 223

Query: 168 KQIS--VPVRVQGLEQVKLIAV-GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
             IS   PV V+ L  V  ++V G+  ++A + DG +W+WG+N  GQLG G     S P 
Sbjct: 224 TTISRTAPVPVKNLTGVSAVSVMGSNSSVARKSDGTVWSWGDNWVGQLGVGSAVSTS-PT 282

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           PVQ     T V I +G  H  AL  DG + GWG   +G+LG  D    ++  P  V  LA
Sbjct: 283 PVQVPGITTAVAIQSGVGHGMALLADGTLKGWGYNLYGQLG--DGTTRTRYTPVLVPGLA 340

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
              +V ++ G  HS+A+T DG ++++G    G LG G       P+ V + +P
Sbjct: 341 --QVVHLAAGTLHSLAVTADGKVWAWGDNAQGTLGDGTTTQRLAPVTV-VGLP 390


>gi|403330678|gb|EJY64235.1| hypothetical protein OXYTRI_24854 [Oxytricha trifallax]
          Length = 1365

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 106/394 (26%), Positives = 177/394 (44%), Gaps = 52/394 (13%)

Query: 5   TSIIAWGSGEDGQLGIGNNE-EREWVCVVKALEPYKVRSVVAGSRNSLAICD-------- 55
           T I +WGS + GQLG+G ++  + +           ++ V  G  ++  I          
Sbjct: 82  TEIFSWGSDQAGQLGLGQSQIGKSYPVPRYCTYNIGIKYVSCGDEHAAFITTGNMVYSMG 141

Query: 56  ----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                     D   K +N P  V AL + K +  A G  H L   ++G  Y+WG   +G 
Sbjct: 142 SNTNGQLGVGDMSLKMKNSPMLVEALMDQKPISIACGANHTLVCTERGDVYSWGQGIFGA 201

Query: 106 CGEEPERKDDTGRILRRDIVIPQ-RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
            G      DD  + L + I I   + + K  + QV+AG   S +L + G V+T GQ    
Sbjct: 202 LG--AGNLDD--QFLPKLIHISHDQLSTKSQMIQVSAGMRFSAILDQSGRVYTCGQNDAG 257

Query: 161 PWPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G   Q ++P+ ++   E+V +IA G  H L L + G +++ G N +GQLG  + + 
Sbjct: 258 QLGIGGRDQENIPISIKKFPERVSMIACGQMHLLMLTKQGTVYSCGANSFGQLGLNNKRN 317

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S P+ +Q +S + +  +AAG + ++   D G++Y WG G  G            + P +
Sbjct: 318 SSSPLLIQDISHIPMRYVAAGSFSASISYDSGDLYLWGSGVFGEF----------LTPHR 367

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  + G   V VS G    +A+ +DG ++S+G  + G LG G               P P
Sbjct: 368 VKTIKGM-TVSVSIGNHFGIAVNQDGIVYSWGHNNSGELGQGDFDER----------PTP 416

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEES 373
           +      D+  I  LV+CG   ++A+ +   +E+
Sbjct: 417 QIINQLNDK--IVTLVSCGRNFSIALGQTLKQEA 448


>gi|410903564|ref|XP_003965263.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
           [Takifugu rubripes]
          Length = 3883

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 180/388 (46%), Gaps = 57/388 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDDGKTK---- 60
           ++  WGS    QL  G  E+   + + K  + +   +++ AG   + ++  DG  K    
Sbjct: 382 TVYVWGSNSSHQLAEGTLEK---ILLPKLTQGFSDAQTIEAGQYCTFSVSTDGSVKACGK 438

Query: 61  ------------TENIPSQV--NALSNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQ 105
                        +++P ++      N K V ++ G   H LA+   G  ++WG  EYG+
Sbjct: 439 GSYGRLGLGDSNNQSLPKKLVLEPHRNIKKVSSSKGSDGHTLAITVDGEVFSWGDGEYGK 498

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
            G          +I++  +          IV   +AG  HS  +T++G ++TWG+    G
Sbjct: 499 LGHGNSATQKYPKIIQGPLF-------SKIVVSASAGYRHSAAVTKDGELYTWGE----G 547

Query: 166 DIKQI--------SVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGD 216
           D  ++        ++P  V+ +  V  +A G+ H +A+ +DG  +W++G  + G+LG GD
Sbjct: 548 DFGRLGHSDSQSRNMPTLVKDISGVGQVACGSSHTIAVAQDGRTVWSFGGGDNGKLGHGD 607

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T    +P  ++ L G  +  + AG   S ALT  G+V+ WG G    LG G ++ +S + 
Sbjct: 608 TNRVYRPKVIEALHGFIIRKVCAGSQSSLALTSAGQVFAWGCG--SCLGCGSSETTS-LR 664

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P+ V  L+   I+ +SCG +H +AL+ +  ++++G    G+ G G   T       PI  
Sbjct: 665 PRFVEDLSITKIIDISCGDSHCLALSHENEVYAWGNNTMGQCGQGHTST-------PITR 717

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           P      +GV  + I      G  H+LA
Sbjct: 718 PKKVLGLEGVSIQQITA----GTSHSLA 741



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 25/248 (10%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGH 154
            Y WG   YGQ          TG     ++ +P   AP L   +QV  G   S ++   G 
Sbjct: 3023 YLWGNGRYGQLA-------GTGT----NLTVPT-LAPSLSQTQQVVCGQNCSFLIQSNGV 3070

Query: 155  VWTWGQ----PWPPGDIKQISVPVRV---QGLEQVKLIAVGAF--HNLALQEDGALWAWG 205
            V   G+        G+   + VP  +   QG    +L+       H++AL E G +++WG
Sbjct: 3071 VTAVGEGQYGRLGQGNSDDLYVPTIISAFQGYVVTQLVTSCGSDGHSMALTETGEVFSWG 3130

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            + ++G+LG G+ + + +P  ++ L G  +V +A G  HS  +T DG+++ +G GE GRL 
Sbjct: 3131 DGDFGKLGHGNNERQRRPKQIEALQGEDVVQLACGFRHSAVVTADGKLFTFGSGESGRL- 3189

Query: 266  FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKV 324
             G    S+KM+P++V  L G  + QVSCG  H++ L+ DG  +++FG GD+G+LG G   
Sbjct: 3190 -GQRSTSNKMLPERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGDGDYGKLGAGSST 3248

Query: 325  TTGQPMEV 332
                P +V
Sbjct: 3249 AKYYPQKV 3256



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 128/271 (47%), Gaps = 31/271 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            +  T  + +WG G+ G+LG GNNE +     ++AL+   V  +  G R+S  +  DGK  
Sbjct: 3120 LTETGEVFSWGDGDFGKLGHGNNERQRRPKQIEALQGEDVVQLACGFRHSAVVTADGKLF 3179

Query: 59   --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEY 103
                          T  + +P +V AL    + Q + G  H L +   G A +A+G  +Y
Sbjct: 3180 TFGSGESGRLGQRSTSNKMLPERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGDGDY 3239

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-- 161
            G+ G        T +   + +   Q C   +  ++V  G   SVV+  +GHV+T+GQ   
Sbjct: 3240 GKLGA----GSSTAKYYPQKV--EQLCNKGM--KKVCCGAQFSVVVACDGHVYTFGQERL 3291

Query: 162  --WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               P   +K  S P  V  LE + +  IAVG  H LAL   G ++AWG N  GQLG G  
Sbjct: 3292 IGLPDSMLKNRSNPQVVPSLEGLFIEDIAVGCEHVLALSSTGDVYAWGCNSEGQLGLGHC 3351

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             P  +P  +  L G  +  I+AG  HS+A T
Sbjct: 3352 NPVKEPTLITALQGKNIKQISAGRCHSSAWT 3382



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 48/328 (14%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSR-NSLAICDDGKT---- 59
            + A G G+ G+LG GN+++     ++ A + Y V  +V   GS  +S+A+ + G+     
Sbjct: 3071 VTAVGEGQYGRLGQGNSDDLYVPTIISAFQGYVVTQLVTSCGSDGHSMALTETGEVFSWG 3130

Query: 60   ------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                        + +  P Q+ AL    +VQ A G  H   V   G+ + +G  E G+ G
Sbjct: 3131 DGDFGKLGHGNNERQRRPKQIEALQGEDVVQLACGFRHSAVVTADGKLFTFGSGESGRLG 3190

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGH-VWTWGQPWPP 164
            +    +  + ++L      P+R A      V QV+ G  H++VL+ +G  VW +G     
Sbjct: 3191 Q----RSTSNKML------PERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGD---- 3236

Query: 165  GDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
            GD  ++          P +V+ L  + +K +  GA  ++ +  DG ++ +G      L  
Sbjct: 3237 GDYGKLGAGSSTAKYYPQKVEQLCNKGMKKVCCGAQFSVVVACDGHVYTFGQERLIGLPD 3296

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
               + RS P  V  L GL + DIA G  H  AL+  G+VY WG    G+LG G  +   +
Sbjct: 3297 SMLKNRSNPQVVPSLEGLFIEDIAVGCEHVLALSSTGDVYAWGCNSEGQLGLGHCNPVKE 3356

Query: 275  MVPQKVNLLAGEDIVQVSCGGTHSVALT 302
              P  +  L G++I Q+S G  HS A T
Sbjct: 3357 --PTLITALQGKNIKQISAGRCHSSAWT 3382



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 24/221 (10%)

Query: 155 VWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           V+ WG         G +++I +P   QG    + I  G +   ++  DG++ A G   YG
Sbjct: 383 VYVWGSNSSHQLAEGTLEKILLPKLTQGFSDAQTIEAGQYCTFSVSTDGSVKACGKGSYG 442

Query: 211 QLGTGDTQPRSQP--IPVQGLSGLTLVDIAAGG-WHSTALTDDGEVYGWGRGEHGRLGFG 267
           +LG GD+  +S P  + ++    +  V  + G   H+ A+T DGEV+ WG GE+G+LG G
Sbjct: 443 RLGLGDSNNQSLPKKLVLEPHRNIKKVSSSKGSDGHTLAITVDGEVFSWGDGEYGKLGHG 502

Query: 268 DNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           ++  +++  P+ +   L  + +V  S G  HS A+T+DG ++++G GD GRLG+    + 
Sbjct: 503 NS--ATQKYPKIIQGPLFSKIVVSASAGYRHSAAVTKDGELYTWGEGDFGRLGHSDSQSR 560

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                   N+P       GV +      VACG  HT+A+ +
Sbjct: 561 --------NMPTLVKDISGVGQ------VACGSSHTIAVAQ 587



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 153/331 (46%), Gaps = 53/331 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +     +  LEP++    V+ S+ S    LAI  DG+   
Sbjct: 432 SVKACGKGSYGRLGLGDSNNQSLPKKL-VLEPHRNIKKVSSSKGSDGHTLAITVDGEVFS 490

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +     +KIV +A  G+ H  AV   G  Y WG  ++G
Sbjct: 491 WGDGEYGKLGHGNSATQKYPKIIQGPLFSKIVVSASAGYRHSAAVTKDGELYTWGEGDFG 550

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGH-VWTW 158
           + G    +                R  P L+     V QVA G +H++ + ++G  VW++
Sbjct: 551 RLGHSDSQS---------------RNMPTLVKDISGVGQVACGSSHTIAVAQDGRTVWSF 595

Query: 159 GQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G         GD  ++  P  ++ L    ++ +  G+  +LAL   G ++AWG      L
Sbjct: 596 GGGDNGKLGHGDTNRVYRPKVIEALHGFIIRKVCAGSQSSLALTSAGQVFAWGCGSC--L 653

Query: 213 GTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           G G ++  S +P  V+ LS   ++DI+ G  H  AL+ + EVY WG    G+ G G +  
Sbjct: 654 GCGSSETTSLRPRFVEDLSITKIIDISCGDSHCLALSHENEVYAWGNNTMGQCGQG-HTS 712

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           +    P+KV  L G  I Q++ G +HS+A T
Sbjct: 713 TPITRPKKVLGLEGVSIQQITAGTSHSLAWT 743



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 94/217 (43%), Gaps = 66/217 (30%)

Query: 201  LWAWGNNEYGQL---GTGDTQPRSQP---------------------------------- 223
            ++ WGN  YGQL   GT  T P   P                                  
Sbjct: 3022 VYLWGNGRYGQLAGTGTNLTVPTLAPSLSQTQQVVCGQNCSFLIQSNGVVTAVGEGQYGR 3081

Query: 224  ----------IP-----VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
                      +P      QG     LV       HS ALT+ GEV+ WG G+ G+LG G+
Sbjct: 3082 LGQGNSDDLYVPTIISAFQGYVVTQLVTSCGSDGHSMALTETGEVFSWGDGDFGKLGHGN 3141

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
            N++  +  P+++  L GED+VQ++CG  HS  +T DG +F+FG G+ GRLG   + +T  
Sbjct: 3142 NERQRR--PKQIEALQGEDVVQLACGFRHSAVVTADGKLFTFGSGESGRLG---QRSTSN 3196

Query: 329  PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             M     +P    A +G    +    V+CG  HTL +
Sbjct: 3197 KM-----LPERVAALEG----YHVGQVSCGLNHTLVL 3224


>gi|301755358|ref|XP_002913533.1| PREDICTED: x-linked retinitis pigmentosa GTPase regulator-like
           [Ailuropoda melanoleuca]
          Length = 1011

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 149/316 (47%), Gaps = 26/316 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T N P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G       DT
Sbjct: 80  GSKSTVNKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYASGGNNEGQLG-----LGDT 134

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISV 172
               R    +      +  ++Q++AG   S  LT +G ++ WG          +I  + V
Sbjct: 135 DE--RNSFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLKNITNVCV 192

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG       +  +P Q + G+
Sbjct: 193 PQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPKQLLVNHRMP-QSVPGI 251

Query: 233 --TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +    I  
Sbjct: 252 PEKVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETP-VPKVIEHIKDLKISS 309

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           + CG  H+  +T  G +++FG G HG+LG G +  T Q          P    + +  R+
Sbjct: 310 IFCGENHTALITDLGLMYTFGDGRHGKLGLGLENFTNQ--------FTPTLCSNFL--RF 359

Query: 351 IAKLVACGGRHTLAIV 366
           I +LVACGG HTL   
Sbjct: 360 IVQLVACGGCHTLVFA 375



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 146/321 (45%), Gaps = 38/321 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + GK        
Sbjct: 66  LYMFGSNNWGQLGLGSKSTVNKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYASGGNN 125

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T   N    ++   S  KI Q + G     A+ + G  + WG N  GQ G  
Sbjct: 126 EGQLGLGDTDERNSFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIG-- 183

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
              K+ T      ++ +PQ+      +  ++ G  HS  +T EG ++T+G+P       P
Sbjct: 184 --LKNIT------NVCVPQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLP 235

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
              +    +P  V G+ E+V  +A G  H + L E  A++ +G  ++GQLG G T     
Sbjct: 236 KQLLVNHRMPQSVPGIPEKVVQVACGGGHTVVLTEK-AVYTFGLGQFGQLGLG-TFLFET 293

Query: 223 PIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           P+P  ++ +  L +  I  G  H+  +TD G +Y +G G HG+LG G  + +++  P   
Sbjct: 294 PVPKVIEHIKDLKISSIFCGENHTALITDLGLMYTFGDGRHGKLGLGLENFTNQFTPTLC 353

Query: 281 NLLAGEDIVQVSCGGTHSVAL 301
           +      +  V+CGG H++  
Sbjct: 354 SNFLRFIVQLVACGGCHTLVF 374



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    ++ P  V+ L  E+VK  A G  H
Sbjct: 50  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKSTVNKPTCVKALKPEKVKFAACGRNH 108

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT  R+    +    S   +  ++AG   S ALT+D
Sbjct: 109 TLVSTEGGKVYASGGNNEGQLGLGDTDERNSFHLISFFTSQRKIKQLSAGSNTSAALTED 168

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    + ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 169 GELFMWGDNSEGQIGL--KNITNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGELYTF 224

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG  +++     M  P ++P       G+  + +   VACGG HT+ + E
Sbjct: 225 GEPESGKLGLPKQLLVNHRM--PQSVP-------GIPEKVVQ--VACGGGHTVVLTE 270



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 143/328 (43%), Gaps = 38/328 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N      + G  H   V    + Y +G N +GQ G   
Sbjct: 23  AVFTFGKTKFAENIPSKF-WFKNDIPAFLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 78

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  V    C   L    V+  A G  H++V T  G V+  G        
Sbjct: 79  --------LGSKSTVNKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYASGGNNEGQLG 130

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD  +     +        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 131 LGDTDERNSFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLKNI--T 188

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T +GE+Y +G  E G+LG       +  +PQ V
Sbjct: 189 NVCVPQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPKQLLVNHRMPQSV 248

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             +  E +VQV+CGG H+V LT    +++FG G  G+LG G  +            P P+
Sbjct: 249 PGIP-EKVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFL---------FETPVPK 297

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVEW 368
                 D +  +  + CG  HT  I + 
Sbjct: 298 VIEHIKDLKISS--IFCGENHTALITDL 323


>gi|167517927|ref|XP_001743304.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778403|gb|EDQ92018.1| predicted protein [Monosiga brevicollis MX1]
          Length = 850

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 124/254 (48%), Gaps = 28/254 (11%)

Query: 96  YAWGGN---EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           ++WG     E G    +P        +L R           L    +A G   + V+  E
Sbjct: 2   FSWGNTRDAELGYVANQPVESPQINTLLSR-----------LNPTHIALGQRGTFVIDGE 50

Query: 153 GHVWTWG-QPWPPGDIKQI-----SVPVRVQGLEQVKLIAVGAF-HNLALQEDGALWAWG 205
           G +W+ G    P  D+K       S    V+GLE  + I V A  H LA+   G +++WG
Sbjct: 51  GRLWSCGSHTRPQNDVKSFLGHAESSLALVEGLESERFIQVSATSHVLAVTLQGEVYSWG 110

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           +N Y QLG      R  P+ +  L G  +V + AGG HS A++  G +Y WGRG +GRLG
Sbjct: 111 SNSYKQLGRDGVNNR--PMKITALEGEEVVQVCAGGHHSAAVSKAGNLYTWGRGGYGRLG 168

Query: 266 FGDNDKSSKMVPQKVNLL-AGEDIVQVSCG--GTHSVALTRDGHIFSFGRGDHGRLGYGR 322
            G +D  +  VP +V     G  +V V+CG    HS+ +T DGHI+SFG GD G+LG+G 
Sbjct: 169 HGTSDDVN--VPTRVAAFPEGIRVVHVACGLGDAHSMCVTEDGHIYSFGDGDFGKLGHGT 226

Query: 323 KVTTGQPMEVPINI 336
                QP  +  +I
Sbjct: 227 NDRRRQPERIDFDI 240



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 163/363 (44%), Gaps = 48/363 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG+  D +LG   N+  E   +   L       +  G R +  I  +G+        
Sbjct: 1   VFSWGNTRDAELGYVANQPVESPQINTLLSRLNPTHIALGQRGTFVIDGEGRLWSCGSHT 60

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        E+  + V  L + + +Q +    H LAV  QG  Y+WG N Y Q G 
Sbjct: 61  RPQNDVKSFLGHAESSLALVEGLESERFIQVSATS-HVLAVTLQGEVYSWGSNSYKQLGR 119

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
           +         +  R + I      +++  QV AGG HS  +++ G+++TWG+        
Sbjct: 120 DG--------VNNRPMKITALEGEEVV--QVCAGGHHSAAVSKAGNLYTWGRGGYGRLGH 169

Query: 165 GDIKQISVPVRVQGL-EQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           G    ++VP RV    E ++++ V    G  H++ + EDG ++++G+ ++G+LG G    
Sbjct: 170 GTSDDVNVPTRVAAFPEGIRVVHVACGLGDAHSMCVTEDGHIYSFGDGDFGKLGHGTNDR 229

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R QP  +       +V +  G   S A++  G +Y WG G   RLG G   ++    P+ 
Sbjct: 230 RRQPERID----FDIVKVVCGSSTSAAISLSGALYVWGGGRRYRLGTGT--EAVIWQPRT 283

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG--YGRKVTTGQP--MEVPIN 335
            + L    +V  +    H VA+T  G +F +G  DHG+LG   G + T   P  +++P  
Sbjct: 284 AHALNTHKVVDCALSSEHGVAVTDRGEVFVWGANDHGQLGADAGSEKTIIAPRVIKLPGE 343

Query: 336 IPA 338
            PA
Sbjct: 344 FPA 346


>gi|449280356|gb|EMC87683.1| RCC1 and BTB domain-containing protein 1 [Columba livia]
          Length = 531

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 22/230 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLAL 195
           G H V+ T +G V+ WG         G   Q   PV+V     +++V  +A G+ H++AL
Sbjct: 84  GPHVVLCTEDGEVYAWGHNGYSQLGNGTTNQGITPVQVCTNLLIKKVVEVACGSHHSMAL 143

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVY 254
             DG L+AWG N  GQ+G+G T  +  P  V   L G  +V IA G   S A+  +GEVY
Sbjct: 144 SFDGDLYAWGYNNCGQVGSGSTANQPTPRRVSNCLQGKMVVGIACGQTSSMAVVSNGEVY 203

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
           GWG   +G+LG G+N   +++ P +V  L G  I+Q++CG  H++ALT +G ++++G   
Sbjct: 204 GWGYNGNGQLGLGNN--GNQLTPCRVAALHGVCILQIACGYAHTLALTDEGLLYAWGANT 261

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P+++ +            ++  + ++ AC   HT A
Sbjct: 262 YGQLGTGNKSNQLSPVQIMM------------EKERVVEIAACHSAHTSA 299



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 135/266 (50%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H +   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVYAWGHNGYSQLGNGTTNQGI 116

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T   +  +++I +       V +VA G  HS+ L+ +G ++ WG         G      
Sbjct: 117 TPVQVCTNLLIKK-------VVEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQP 169

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P RV    Q K+   IA G   ++A+  +G ++ WG N  GQLG G+   +  P  V  
Sbjct: 170 TPRRVSNCLQGKMVVGIACGQTSSMAVVSNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA 229

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L G+ ++ IA G  H+ ALTD+G +Y WG   +G+LG G  +KS+++ P ++ ++  E +
Sbjct: 230 LHGVCILQIACGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNQLSPVQI-MMEKERV 286

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C   H S A T+ G ++ +G+
Sbjct: 287 VEIAACHSAHTSAAKTQSGQVYMWGQ 312



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 131/265 (49%), Gaps = 29/265 (10%)

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDI 167
           D G+     ++ PQ  A    +R+    GT    ++ +T    V+ +G         GD 
Sbjct: 3   DVGKWPIFTLLSPQEVAS---IRKACVFGTSANEAIYITHNDEVFVFGLNCSNCLGTGDN 59

Query: 168 KQISVPVRVQGL--EQVKLIAVGA-FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   VP +++ L  +++  ++ G+  H +   EDG ++AWG+N Y QLG G T     P+
Sbjct: 60  QSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVYAWGHNGYSQLGNGTTNQGITPV 119

Query: 225 PV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NL 282
            V   L    +V++A G  HS AL+ DG++Y WG    G++G G    +++  P++V N 
Sbjct: 120 QVCTNLLIKKVVEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGST--ANQPTPRRVSNC 177

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G+ +V ++CG T S+A+  +G ++ +G   +G+LG G       P  V         A
Sbjct: 178 LQGKMVVGIACGQTSSMAVVSNGEVYGWGYNGNGQLGLGNNGNQLTPCRVA--------A 229

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
             GV        +ACG  HTLA+ +
Sbjct: 230 LHGV----CILQIACGYAHTLALTD 250



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 45/161 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   +  WG   +GQLG+GNN  +   C V AL    +  +  G  ++LA+       
Sbjct: 196 VVSNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAALHGVCILQIACGYAHTLAL------- 248

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                         D+G  YAWG N YGQ G      + + ++ 
Sbjct: 249 -----------------------------TDEGLLYAWGANTYGQLG----TGNKSNQLS 275

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
              I++ +    + +V   A    H S   T+ G V+ WGQ
Sbjct: 276 PVQIMMEK----ERVVEIAACHSAHTSAAKTQSGQVYMWGQ 312


>gi|229442453|gb|AAI72909.1| guanine nucleotide exchange factor p532 [synthetic construct]
          Length = 2440

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV VS G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 732



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       +++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VD++ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|428171592|gb|EKX40507.1| hypothetical protein GUITHDRAFT_96261, partial [Guillardia theta
           CCMP2712]
          Length = 424

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 128/255 (50%), Gaps = 25/255 (9%)

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSV 147
           ++G  Y +G N +GQ G        TG +   + VIP    P L    +  VAAG   SV
Sbjct: 94  NEGDVYGFGSNNFGQLG--------TGSL--NNTVIPM-IVPVLRNQNMSAVAAGEEFSV 142

Query: 148 VLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQV---KLIAVGAFHNLALQEDGALWAW 204
             + +G +W+WG+ +  G +      + +         K + +   H LAL   G L+AW
Sbjct: 143 SSSLKGRLWSWGRNYR-GQLGLTDAGINLCTYPPCSVEKSVKLTNHHTLALSRSGILFAW 201

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           G N  GQLGTGDT  R QP P +    L    ++AGG HS A+T  G+VY WG G  G+L
Sbjct: 202 GINHMGQLGTGDTADRFQPTPTKNSKDLLFFQVSAGGEHSMAVTSLGKVYVWGSGSSGQL 261

Query: 265 GFGDNDKSSKMVPQKVNL-------LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           G    D     V  + +L       L  + IVQV+ G  HS+AL++DG I+ +G   HG+
Sbjct: 262 GQDSLDIGPNSVEPRRSLEAILVPGLKDQFIVQVAAGWLHSIALSKDGEIWIWGGNRHGQ 321

Query: 318 LGYGRKVTTGQPMEV 332
           LG G K+    P+++
Sbjct: 322 LGLGDKLNRFAPVKL 336



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 131/311 (42%), Gaps = 56/311 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS------------------- 47
           +  +GS   GQLG G+        +V  L    + +V AG                    
Sbjct: 98  VYGFGSNNFGQLGTGSLNNTVIPMIVPVLRNQNMSAVAAGEEFSVSSSLKGRLWSWGRNY 157

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           R  L + D G       P  V            +   H LA+   G  +AWG N  GQ G
Sbjct: 158 RGQLGLTDAGINLCTYPPCSVEK-------SVKLTNHHTLALSRSGILFAWGINHMGQLG 210

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
                   TG    R    P + +  L+  QV+AGG HS+ +T  G V+ WG     G +
Sbjct: 211 --------TGDTADRFQPTPTKNSKDLLFFQVSAGGEHSMAVTSLGKVYVWGSG-SSGQL 261

Query: 168 KQISV--------------PVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQ 211
            Q S+               + V GL+   ++ V A   H++AL +DG +W WG N +GQ
Sbjct: 262 GQDSLDIGPNSVEPRRSLEAILVPGLKDQFIVQVAAGWLHSIALSKDGEIWIWGGNRHGQ 321

Query: 212 LGTGDTQPRSQPIPVQGLSGLTL---VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           LG GD   R  P+ +QG     L   + IAAG  HS  L   G V+  GR + G+LG G+
Sbjct: 322 LGLGDKLNRFAPVKLQGKEFQMLGPVISIAAGHGHSLFLNSSGHVFSSGRNDAGQLGVGN 381

Query: 269 N-DKSS-KMVP 277
           + D+SS   VP
Sbjct: 382 SIDRSSISFVP 392



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 135/309 (43%), Gaps = 42/309 (13%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           N+      G      IP  V  L N  +   A G    ++   +GR ++WG N  GQ G 
Sbjct: 104 NNFGQLGTGSLNNTVIPMIVPVLRNQNMSAVAAGEEFSVSSSLKGRLWSWGRNYRGQLG- 162

Query: 109 EPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
                 D G  L         C   P  + + V     H++ L+R G ++ WG       
Sbjct: 163 ----LTDAGINL---------CTYPPCSVEKSVKLTNHHTLALSRSGILFAWGINHMGQL 209

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLG--TGDTQ 218
             GD      P   +  + +    V  G  H++A+   G ++ WG+   GQLG  + D  
Sbjct: 210 GTGDTADRFQPTPTKNSKDLLFFQVSAGGEHSMAVTSLGKVYVWGSGSSGQLGQDSLDIG 269

Query: 219 PRS-------QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           P S       + I V GL    +V +AAG  HS AL+ DGE++ WG   HG+LG GD  K
Sbjct: 270 PNSVEPRRSLEAILVPGLKDQFIVQVAAGWLHSIALSKDGEIWIWGGNRHGQLGLGD--K 327

Query: 272 SSKMVPQKVNLLAGED------IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
            ++  P K   L G++      ++ ++ G  HS+ L   GH+FS GR D G+LG G  + 
Sbjct: 328 LNRFAPVK---LQGKEFQMLGPVISIAAGHGHSLFLNSSGHVFSSGRNDAGQLGVGNSID 384

Query: 326 TGQPMEVPI 334
                 VPI
Sbjct: 385 RSSISFVPI 393



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 20/197 (10%)

Query: 172 VPVRVQGLEQVKLIAVG-AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           V + +  L   +++  G  F  L + E G ++ +G+N +GQLGTG       P+ V  L 
Sbjct: 69  VDIGMHNLSSDEILLYGNPFSTLTINE-GDVYGFGSNNFGQLGTGSLNNTVIPMIVPVLR 127

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +  +AAG   S + +  G ++ WGR   G+LG  D   +    P      + E  V+
Sbjct: 128 NQNMSAVAAGEEFSVSSSLKGRLWSWGRNYRGQLGLTDAGINLCTYPP----CSVEKSVK 183

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           ++    H++AL+R G +F++G    G+LG G      QP          +N+ D      
Sbjct: 184 LT--NHHTLALSRSGILFAWGINHMGQLGTGDTADRFQPTPT-------KNSKD-----L 229

Query: 351 IAKLVACGGRHTLAIVE 367
           +   V+ GG H++A+  
Sbjct: 230 LFFQVSAGGEHSMAVTS 246


>gi|357393793|ref|YP_004908634.1| hypothetical protein KSE_69190 [Kitasatospora setae KM-6054]
 gi|311900270|dbj|BAJ32678.1| hypothetical protein KSE_69190 [Kitasatospora setae KM-6054]
          Length = 430

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 151/359 (42%), Gaps = 53/359 (14%)

Query: 9   AWGSGEDGQLGIGN-NEEREWVCVVKALEPYKV---------------------RSVVAG 46
           AWG+   GQLG G   + R     V  L   +V                     R+V + 
Sbjct: 64  AWGNNRSGQLGDGTWTDFRTTATTVLGLTSAEVVKIAAGGGGSATGHGLALLTDRTVQSW 123

Query: 47  SRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
             N      DG   + N P QV  LS+ + V A  GGWH LA+ D     AWG N YGQ 
Sbjct: 124 GANGSGQLGDGSVFSHNAPGQVVNLSSARDVAA--GGWHSLALLDDQTVVAWGRNNYGQL 181

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G               D  +P R      V  +AAG  HS+ L  +G VW WG       
Sbjct: 182 GNGTNS----------DSSVPVRVEGLNKVIAIAAGLNHSIALREDGTVWAWGYNINGQL 231

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL----------QEDGALWAWGNNEYGQL 212
             G     +VP  V GL  V  IA G  HNLAL              A+ AWG N  GQL
Sbjct: 232 GDGTSASRNVPAPVGGLTGVTKIAAGCNHNLALVGPPSGGVKPTSGNAVKAWGYNATGQL 291

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-DGEVYGWGRGEHGRLGFGDNDK 271
           G   T  R  P+  QG+    +  IAAG  HS A+TD D ++  WG+   G++G G  D 
Sbjct: 292 GDNSTINRYTPVDTQGIWLGGVSQIAAGCNHSLAVTDSDNKLKAWGQNTSGQVGDGTTDY 351

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             ++ P  V  L G  I  V+ G  H++ L  D  + S+G    G+LG G    +  P+
Sbjct: 352 --RITPVPVPGLKG--IQLVAGGREHTIVLLGDNTVRSWGANGSGQLGNGTTTESSTPV 406



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 123/252 (48%), Gaps = 29/252 (11%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           +WG N  GQ G+        G +   +   P +       R VAAGG HS+ L  +  V 
Sbjct: 122 SWGANGSGQLGD--------GSVFSHNA--PGQVVNLSSARDVAAGGWHSLALLDDQTVV 171

Query: 157 TWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
            WG+        G     SVPVRV+GL +V  IA G  H++AL+EDG +WAWG N  GQL
Sbjct: 172 AWGRNNYGQLGNGTNSDSSVPVRVEGLNKVIAIAAGLNHSIALREDGTVWAWGYNINGQL 231

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL----------TDDGEVYGWGRGEHG 262
           G G +  R+ P PV GL+G+T   IAAG  H+ AL          T    V  WG    G
Sbjct: 232 GDGTSASRNVPAPVGGLTGVT--KIAAGCNHNLALVGPPSGGVKPTSGNAVKAWGYNATG 289

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYG 321
           +L  GDN   ++  P     +    + Q++ G  HS+A+T  D  + ++G+   G++G G
Sbjct: 290 QL--GDNSTINRYTPVDTQGIWLGGVSQIAAGCNHSLAVTDSDNKLKAWGQNTSGQVGDG 347

Query: 322 RKVTTGQPMEVP 333
                  P+ VP
Sbjct: 348 TTDYRITPVPVP 359



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 138/328 (42%), Gaps = 50/328 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD--------- 56
           ++ +WG+   GQLG G+         V  L     R V AG  +SLA+ DD         
Sbjct: 119 TVQSWGANGSGQLGDGSVFSHNAPGQVVNLS--SARDVAAGGWHSLALLDDQTVVAWGRN 176

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G     ++P +V  L+  K++  A G  H +A+ + G  +AWG N  GQ G+ 
Sbjct: 177 NYGQLGNGTNSDSSVPVRVEGLN--KVIAIAAGLNHSIALREDGTVWAWGYNINGQLGDG 234

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT------------REGHVWT 157
                +          +P        V ++AAG  H++ L                  W 
Sbjct: 235 TSASRN----------VPAPVGGLTGVTKIAAGCNHNLALVGPPSGGVKPTSGNAVKAWG 284

Query: 158 WGQPWPPGDIKQIS--VPVRVQG--LEQVKLIAVGAFHNLALQE-DGALWAWGNNEYGQL 212
           +      GD   I+   PV  QG  L  V  IA G  H+LA+ + D  L AWG N  GQ+
Sbjct: 285 YNATGQLGDNSTINRYTPVDTQGIWLGGVSQIAAGCNHSLAVTDSDNKLKAWGQNTSGQV 344

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G G T  R  P+PV GL G+ LV  A G  H+  L  D  V  WG    G+LG G   +S
Sbjct: 345 GDGTTDYRITPVPVPGLKGIQLV--AGGREHTIVLLGDNTVRSWGANGSGQLGNGTTTES 402

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
           S  V   +  L G D +    GG  S+A
Sbjct: 403 STPV-TTLTALTGVDKIAAPVGGDFSLA 429



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 12/212 (5%)

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           R  AWG N  GQ G+       T       +   +    K+      +   H + L  + 
Sbjct: 61  RLKAWGNNRSGQLGDGTWTDFRTTATTVLGLTSAEVV--KIAAGGGGSATGHGLALLTDR 118

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
            V +WG         G +   + P +V  L   + +A G +H+LAL +D  + AWG N Y
Sbjct: 119 TVQSWGANGSGQLGDGSVFSHNAPGQVVNLSSARDVAAGGWHSLALLDDQTVVAWGRNNY 178

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQLG G     S P+ V+GL+   ++ IAAG  HS AL +DG V+ WG   +G+L  GD 
Sbjct: 179 GQLGNGTNSDSSVPVRVEGLN--KVIAIAAGLNHSIALREDGTVWAWGYNINGQL--GDG 234

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             +S+ VP  V  L G  + +++ G  H++AL
Sbjct: 235 TSASRNVPAPVGGLTG--VTKIAAGCNHNLAL 264



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 173 PVRVQGLEQVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLS 230
           PV   GL     +++ A     A  ++  L AWGNN  GQLG G  T  R+    V GL+
Sbjct: 33  PVLAAGLAAFTALSLAAVPAGTAHAQEKRLKAWGNNRSGQLGDGTWTDFRTTATTVLGLT 92

Query: 231 GLTLVDIAAGGWHST-----ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP-QKVNLLA 284
              +V IAAGG  S      AL  D  V  WG    G+L  GD    S   P Q VNL +
Sbjct: 93  SAEVVKIAAGGGGSATGHGLALLTDRTVQSWGANGSGQL--GDGSVFSHNAPGQVVNLSS 150

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             D   V+ GG HS+AL  D  + ++GR ++G+LG G    +  P+ V
Sbjct: 151 ARD---VAAGGWHSLALLDDQTVVAWGRNNYGQLGNGTNSDSSVPVRV 195


>gi|297673959|ref|XP_002815008.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 3
           [Pongo abelii]
          Length = 932

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 110/208 (52%), Gaps = 33/208 (15%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 7   VAVPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRV 66

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAG 285
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  
Sbjct: 67  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRT 123

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +V +SCG  H+  LT+ G +F+FG G +G+LG+                    +  D 
Sbjct: 124 QKVVYISCGEEHTAVLTKSGGVFTFGAGSYGQLGHD-------------------SMNDE 164

Query: 346 VDRRWIAKL-------VACGGRHTLAIV 366
           V+ R + +L       +ACG +HTLA V
Sbjct: 165 VNPRRVLELMGSEVTQIACGRQHTLAFV 192



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 17/217 (7%)

Query: 131 APKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQG 178
            P+LI       + QV+ G  H + L  +G  +TWG     Q     +    + P RV+ 
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRS 68

Query: 179 LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V+ L    +V 
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVY 128

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+  LT  G V+ +G G +G+L  G +  + ++ P++V  L G ++ Q++CG  
Sbjct: 129 ISCGEEHTAVLTKSGGVFTFGAGSYGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQ 186

Query: 297 HSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           H++A     G I++FG G  G+LG G       P  V
Sbjct: 187 HTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 223



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 94/213 (44%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E            
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQAS------ 62

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D K    P  V+
Sbjct: 63  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK 119

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G   YGQLG         P  V  L G  + 
Sbjct: 120 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSYGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 212



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRS 68

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  + QV+ GG HS AL+  G +F +G  + G+LG   +     P  V +        
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL-------- 120

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                R      ++CG  HT  + +
Sbjct: 121 ----LRTQKVVYISCGEEHTAVLTK 141



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 40/226 (17%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT------------ENIPSQ-----VNALSN 73
           +++ L    +  V  G+ + LA+  DG+  T            +  PSQ     V +L  
Sbjct: 12  LIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEG 71

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG---RILRRDIVIPQRC 130
             + Q A GG H  A+   G  + WG N  GQ G   E+  ++    ++LR   V+   C
Sbjct: 72  IPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISC 131

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVK 183
                      G  H+ VLT+ G V+T+G     G +   S+     P RV  L   +V 
Sbjct: 132 -----------GEEHTAVLTKSGGVFTFG-AGSYGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 184 LIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 225



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           + S  VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++  +    
Sbjct: 4   EDSVAVPRLIQKLNQQTILQVSCGNWHCLALASDGQFFTWGKNSHGQLGLGKEFPSQAS- 62

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 P    + +G+    +A+ VA GG H+ A+
Sbjct: 63  ------PQRVRSLEGIP---LAQ-VAAGGAHSFAL 87



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 92  AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 151

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 152 SYGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 210


>gi|325181521|emb|CCA15971.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 6906

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 175/394 (44%), Gaps = 52/394 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI-- 64
           + + G    G+LG+G++ ER  +  V       +R VV+G+     +  DG   T  +  
Sbjct: 350 LYSCGQNSYGELGLGDDIERHQLTSVPLCGWDHIRQVVSGNEILAILTSDGVVLTCGLNK 409

Query: 65  -----------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                            P Q       K + A+ G  H +A+ D G AY+WG N+ GQ G
Sbjct: 410 SGQCGHGNFDERVMLLRPIQALRSHRVKYINASNGCEHLIAITDTGLAYSWGYNDRGQLG 469

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
            E     + G  L    +I      K+  +  A    HS +++  G ++T+G      D 
Sbjct: 470 HE-----NVGTKLYLPKLIESIKEKKM--KSAAVSYHHSALVSVSGELYTFGM----NDC 518

Query: 168 KQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
            Q+        S P  V+ L    V +++ G +H +     G ++  G N++GQLG G  
Sbjct: 519 GQLGLDHTQHQSTPQLVKALLGHHVSMVSCGLYHMVLCTISGEVFTCGKNDHGQLGLGHN 578

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           +    P  V  L    +  +A G +H+TA+T  G  Y +GR ++G+LG G   K  + +P
Sbjct: 579 KQVKVPTQVV-LPNELVCFVACGYYHATAITSTGLTYSFGRNDYGQLGIGS--KIHQNIP 635

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             + + +   +V  +CG  H++ ++  G +F FGR + G+L  G +  T   + VP+ + 
Sbjct: 636 IALTISSNTRMVHAACGCYHTLLMSDSGQVFVFGRNNKGQL--GNRGNTDSLLPVPLKVR 693

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
             +N      RR +   +A G   T  IVE + E
Sbjct: 694 PEKNM-----RRCLH--IAAGFYTTSLIVERKRE 720



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 142/316 (44%), Gaps = 39/316 (12%)

Query: 70   ALSNTKIVQAAIGGWHCLAV-DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV--- 125
            +  + K +Q+  GG   L V    G  +  G N+ GQCG         G    R IV   
Sbjct: 3161 SFFSYKSIQSIAGGNEVLVVLMKDGAVFTCGLNKSGQCG--------IGNFDERLIVPSP 3212

Query: 126  IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLE 180
            IP      + +   + G  H + ++ +G V++WG     Q      + +   P  ++ L 
Sbjct: 3213 IPALSGIPITMVAASNGCEHMLAISHDGAVYSWGYNDRGQLGLGTTVSKSHTPRVIESLR 3272

Query: 181  QVKLI---AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
            +   I   AV   H+  +  +G L  +G N+ GQLG   TQ +  P  V+ LS   +  +
Sbjct: 3273 EKYFITFAAVSYHHSAVVSNNGDLLTFGMNDSGQLGLDHTQHQHTPQLVETLSSQKVGRV 3332

Query: 238  AAGGWHSTALTDDGEVYGWGRGEHGRLGFG--DNDKSSKMV-----PQKVNLLAGEDIVQ 290
            A G +H+ A+ DDG+VY +G+ E+G+LG     N K   +V     P+   L A    VQ
Sbjct: 3333 ACGLYHTVAIVDDGDVYSFGKNEYGQLGLSHTQNTKVPMLVKIPPAPRTPMLDAVNKAVQ 3392

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            V CG  H+V +   G + ++GR D+G+LG G K        VP+ + +            
Sbjct: 3393 VYCGYYHTVTILECGKVVTWGRNDYGQLGIGSKEHKSIAQFVPLPLTSR----------- 3441

Query: 351  IAKLVACGGRHTLAIV 366
              K  +CG  HTL ++
Sbjct: 3442 -VKRASCGCYHTLLLL 3456



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 133/282 (47%), Gaps = 35/282 (12%)

Query: 64   IPSQVNALSNTKI--VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRIL 120
            +PS + ALS   I  V A+ G  H LA+   G  Y+WG N+ GQ G      K  T R++
Sbjct: 3209 VPSPIPALSGIPITMVAASNGCEHMLAISHDGAVYSWGYNDRGQLGLGTTVSKSHTPRVI 3268

Query: 121  RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-------- 172
                   +    K  +   A    HS V++  G + T+G      D  Q+ +        
Sbjct: 3269 -------ESLREKYFITFAAVSYHHSAVVSNNGDLLTFGM----NDSGQLGLDHTQHQHT 3317

Query: 173  PVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ--- 227
            P  V+ L   K+  +A G +H +A+ +DG ++++G NEYGQLG   TQ    P+ V+   
Sbjct: 3318 PQLVETLSSQKVGRVACGLYHTVAIVDDGDVYSFGKNEYGQLGLSHTQNTKVPMLVKIPP 3377

Query: 228  -----GLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
                  L  +   V +  G +H+  + + G+V  WGR ++G+LG G   K  K + Q V 
Sbjct: 3378 APRTPMLDAVNKAVQVYCGYYHTVTILECGKVVTWGRNDYGQLGIGS--KEHKSIAQFVP 3435

Query: 282  LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
            L     + + SCG  H++ L  +G    FGR + G+LG   +
Sbjct: 3436 LPLTSRVKRASCGCYHTLLLLVNGRPMVFGRNNKGQLGVASR 3477



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 125/287 (43%), Gaps = 41/287 (14%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVV 148
           G  Y+ G N YG+ G            L  DI   Q  +  L     +RQV +G     +
Sbjct: 348 GELYSCGQNSYGELG------------LGDDIERHQLTSVPLCGWDHIRQVVSGNEILAI 395

Query: 149 LTREGHVWTWGQPWP----PGDIKQISVPVR-VQGL--EQVKLI--AVGAFHNLALQEDG 199
           LT +G V T G         G+  +  + +R +Q L   +VK I  + G  H +A+ + G
Sbjct: 396 LTSDGVVLTCGLNKSGQCGHGNFDERVMLLRPIQALRSHRVKYINASNGCEHLIAITDTG 455

Query: 200 ALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
             ++WG N+ GQLG  +   +   P  ++ +    +   A    HS  ++  GE+Y +G 
Sbjct: 456 LAYSWGYNDRGQLGHENVGTKLYLPKLIESIKEKKMKSAAVSYHHSALVSVSGELYTFGM 515

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            + G+LG       S   PQ V  L G  +  VSCG  H V  T  G +F+ G+ DHG+L
Sbjct: 516 NDCGQLGLDHTQHQS--TPQLVKALLGHHVSMVSCGLYHMVLCTISGEVFTCGKNDHGQL 573

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G G      + ++VP  +  P           +   VACG  H  AI
Sbjct: 574 GLGH----NKQVKVPTQVVLPNE---------LVCFVACGYYHATAI 607



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 17/179 (9%)

Query: 193  LALQEDGALWAWGNNEYGQLGTGDTQPRS-QPIPVQGLSGLTLVDIAA--GGWHSTALTD 249
            + L +DGA++  G N+ GQ G G+   R   P P+  LSG+ +  +AA  G  H  A++ 
Sbjct: 3179 VVLMKDGAVFTCGLNKSGQCGIGNFDERLIVPSPIPALSGIPITMVAASNGCEHMLAISH 3238

Query: 250  DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC-GGTHSVALTRDGHIF 308
            DG VY WG  + G+LG G    S    P+ +  L  +  +  +     HS  ++ +G + 
Sbjct: 3239 DGAVYSWGYNDRGQLGLGTT-VSKSHTPRVIESLREKYFITFAAVSYHHSAVVSNNGDLL 3297

Query: 309  SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +FG  D G+LG         P  V           + +  + + + VACG  HT+AIV+
Sbjct: 3298 TFGMNDSGQLGLDHTQHQHTPQLV-----------ETLSSQKVGR-VACGLYHTVAIVD 3344



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 121/278 (43%), Gaps = 41/278 (14%)

Query: 6    SIIAWGSGEDGQLGIGNN-----------EEREWVCVVKALEPYKVRSVVA--GSRNSLA 52
            ++ +WG  + GQLG+G               RE   +  A   Y   +VV+  G   +  
Sbjct: 3241 AVYSWGYNDRGQLGLGTTVSKSHTPRVIESLREKYFITFAAVSYHHSAVVSNNGDLLTFG 3300

Query: 53   ICDDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
            + D G+     T+ ++ P  V  LS+ K+ + A G +H +A+ D G  Y++G NEYGQ G
Sbjct: 3301 MNDSGQLGLDHTQHQHTPQLVETLSSQKVGRVACGLYHTVAIVDDGDVYSFGKNEYGQLG 3360

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKL----IVRQVAAGGTHSVVLTREGHVWTWGQP-- 161
                +      +++   + P    P L       QV  G  H+V +   G V TWG+   
Sbjct: 3361 LSHTQNTKVPMLVK---IPPAPRTPMLDAVNKAVQVYCGYYHTVTILECGKVVTWGRNDY 3417

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                    + K I+  V +    +VK  + G +H L L  +G    +G N  GQLG    
Sbjct: 3418 GQLGIGSKEHKSIAQFVPLPLTSRVKRASCGCYHTLLLLVNGRPMVFGRNNKGQLGVAS- 3476

Query: 218  QPRSQP-------IPVQGLSGLTLVDIAAGGWHSTALT 248
              RS P       IP+  LS   +V I+AG + S  LT
Sbjct: 3477 --RSLPSADLPLPIPLHPLSSDEVVYISAGFYCSYILT 3512



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 195  LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + E+  +++ G N YG+L  G   P ++       S  ++  IA G      L  DG V+
Sbjct: 3129 MFEECEIFSCGQNNYGELCLGHCNPTNKLERASFFSYKSIQSIAGGNEVLVVLMKDGAVF 3188

Query: 255  GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV--SCGGTHSVALTRDGHIFSFGR 312
              G  + G+ G G+ D+   +VP  +  L+G  I  V  S G  H +A++ DG ++S+G 
Sbjct: 3189 TCGLNKSGQCGIGNFDE-RLIVPSPIPALSGIPITMVAASNGCEHMLAISHDGAVYSWGY 3247

Query: 313  GDHGRLGYGRKVT 325
             D G+LG G  V+
Sbjct: 3248 NDRGQLGLGTTVS 3260


>gi|440907021|gb|ELR57214.1| Putative E3 ubiquitin-protein ligase HERC1, partial [Bos grunniens
           mutus]
          Length = 4874

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 366 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 417

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 418 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 477

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 478 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 530

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 531 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 590

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 591 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 648

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 649 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 702

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 703 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 730



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 66/349 (18%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4049 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4083

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4084 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4135

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4136 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4184

Query: 179  LEQVKL------------IAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIP 225
            LE  ++            +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  
Sbjct: 4185 LEGYQIGQARNNTLFFLQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQK 4244

Query: 226  VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            V  L G+ +  +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG
Sbjct: 4245 VDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAG 4302

Query: 286  EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
              I  V+ G  H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 4303 VVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 4351



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 45/292 (15%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 4002 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4050

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4051 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4110

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4111 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4170

Query: 267  GDNDKSSKMVPQKVNLLAGEDI----------VQVSCGGTHSVALTRDGH-IFSFGRGDH 315
            G+   S+K +P++V  L G  I          +QV+CG  H++A++ DG  +++FG GD+
Sbjct: 4171 GNT--SNKKLPERVTALEGYQIGQARNNTLFFLQVACGLNHTLAVSADGSMVWAFGDGDY 4228

Query: 316  GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G+LG G       P +V +        G G+      K VACG + ++A+ +
Sbjct: 4229 GKLGLGNSTAKSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4268



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 41/308 (13%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4032 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4084

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4085 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4144

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG----------LTLVDIA 238
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G          L  + +A
Sbjct: 4145 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQARNNTLFFLQVA 4204

Query: 239  AGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
             G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   
Sbjct: 4205 CGLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQF 4262

Query: 298  SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
            SVALT+DGH+++FG+     L  GR     +P ++P+          GV    + + VA 
Sbjct: 4263 SVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLA--------GV----VIEDVAV 4310

Query: 358  GGRHTLAI 365
            G  HTLA+
Sbjct: 4311 GAEHTLAL 4318



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 469 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 528

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 529 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 586

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 587 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 638

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 639 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 698

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 699 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 745



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 138/283 (48%), Gaps = 43/283 (15%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4097 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4156

Query: 59   ----------------TKTENIPSQVNALSNTKI----------VQAAIGGWHCLAVD-D 91
                            T  + +P +V AL   +I          +Q A G  H LAV  D
Sbjct: 4157 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQARNNTLFFLQVACGLNHTLAVSAD 4216

Query: 92   QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
                +A+G  +YG+ G        + +  + D++    C   + +++VA G   SV LT+
Sbjct: 4217 GSMVWAFGDGDYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTK 4268

Query: 152  EGHVWTWGQP----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWG 205
            +GHV+T+GQ      P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG
Sbjct: 4269 DGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWG 4328

Query: 206  NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            +N  GQLG G T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4329 SNSEGQLGLGHTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4371



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 421 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 479

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 480 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 539

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 540 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 589

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 590 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 647

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 648 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 706

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 707 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 745


>gi|327286813|ref|XP_003228124.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein
           ligase HERC1-like [Anolis carolinensis]
          Length = 4963

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 370 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 421

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 422 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 481

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 482 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 534

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 535 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 594

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 595 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 652

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 653 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 706

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DGV  + I    + G  H+LA
Sbjct: 707 --PITKPKKVSGLDGVAIQQI----SAGTSHSLA 734



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4121 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4173

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4174 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4233

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  + ++A G  H+  ++
Sbjct: 4234 FKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVAALEGYQIGEVACGLNHTLVVS 4293

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DGH+
Sbjct: 4294 TDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDILCGIGIKKVACGTQFSVALTKDGHV 4351

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P +VP        A  GV      + +A G  HTLA+
Sbjct: 4352 YTFGQDRLIGLPEGRARNHNRPQQVP--------ALSGV----FVEDIAVGAEHTLAL 4397



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 159/337 (47%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4138 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4172

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4173 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4224

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4225 EEVV-----------QMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPERVAA 4273

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  Q+  +A G  H L +  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4274 LEGYQIGEVACGLNHTLVVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDILCGIGIK 4333

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V  L+G  +  ++ G 
Sbjct: 4334 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPALSGVFVEDIAVGA 4391

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++AL+  G ++++G    G+LG G      +P  V
Sbjct: 4392 EHTLALSASGDVYAWGSNSEGQLGLGHTNHVREPTLV 4428



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 141/282 (50%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            + WG   +GQ  E             R+ V P         +QV  G   + V+   G V
Sbjct: 4091 FLWGAGRHGQLAEA-----------GRNAVSPPPSPSFCQAQQVICGQNCTFVIQANGTV 4139

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4140 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4199

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4200 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGL 4259

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V  L G  I +V+CG  H++ ++ DG  +++FG GD+G+LG G    
Sbjct: 4260 GNT--SNKKLPERVAALEGYQIGEVACGLNHTLVVSTDGSMVWAFGDGDYGKLGLGNSTA 4317

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V I        G G+      K VACG + ++A+ +
Sbjct: 4318 KSSPQKVDI------LCGIGI------KKVACGTQFSVALTK 4347



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 473 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 532

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 533 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 590

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 591 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 642

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 643 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 702

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 703 NSTGPITKPKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 749



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 33/271 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4186 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 4245

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR-AYAWGGN 101
                            T  + +P +V AL   +I + A G  H L V   G   +A+G  
Sbjct: 4246 LFTFGNGDYGRLGLGNTSNKKLPERVAALEGYQIGEVACGLNHTLVVSTDGSMVWAFGDG 4305

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + DI+    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 4306 DYGKLGLGNSTAKSSPQ--KVDIL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 4357

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  IAVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 4358 RLIGLPEGRARNHNRPQQVPALSGVFVEDIAVGAEHTLALSASGDVYAWGSNSEGQLGLG 4417

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             T    +P  V  L G ++  I+AG  HS A
Sbjct: 4418 HTNHVREPTLVTSLQGKSVRQISAGRCHSAA 4448



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 425 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 483

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 484 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 543

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 544 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 593

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 594 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 651

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 652 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 710

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 711 PKKVSGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 749


>gi|222625331|gb|EEE59463.1| hypothetical protein OsJ_11655 [Oryza sativa Japonica Group]
          Length = 581

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 151/334 (45%), Gaps = 53/334 (15%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG---EEPERKDDTGRILRRDIVIPQR 129
           N + +  A G  H  AV   G  Y WG N++GQ G   EE  ++    + L  + V    
Sbjct: 135 NLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSVS 194

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP------------PGDIKQISV- 172
           C        VA    ++  ++R   +W WGQ     +P             G  +Q ++ 
Sbjct: 195 CGAHCTA-AVAEPRENNGTISRS-RLWVWGQNQGSDYPRLFWGAFAPNTASGATEQSTIT 252

Query: 173 -------PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                   +R   LE +  ++ GA H +AL EDG L AWG NEYGQLG G T    Q   
Sbjct: 253 CASSQFLSLRCLSLEVIHQVSCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGAR 312

Query: 226 VQGLSG---------LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK-M 275
           V              + +V ++ G +H+ A++++GEVY WG G  G+LG        K +
Sbjct: 313 VLNAYARFLDEAPELVKIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHCSLQSGDKEL 372

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK------VTTGQP 329
           +P++V  L    I  VSCGG HS A+T DG ++++G G  G+LG G +         G  
Sbjct: 373 IPRRVVALDRTVIRDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSD 432

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           M +  NIP       GV      +LV CG  HTL
Sbjct: 433 MLLR-NIPV-LVIPSGV------QLVTCGHSHTL 458



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 159/374 (42%), Gaps = 84/374 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           +AS  S+  WG+ + GQLG G  E  +    VKALE   V+SV  G+  + A+ +     
Sbjct: 151 VASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSVSCGAHCTAAVAEPRENN 210

Query: 56  --------------------------------DGKTKTENIPS------QVNALSNTKIV 77
                                            G T+   I         +  LS   I 
Sbjct: 211 GTISRSRLWVWGQNQGSDYPRLFWGAFAPNTASGATEQSTITCASSQFLSLRCLSLEVIH 270

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLI- 135
           Q + G  H +A+ + G   AWG NEYGQ G     +   G R+L          AP+L+ 
Sbjct: 271 QVSCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGARVLNAYARFLDE-APELVK 329

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS-----------VPVRVQGLEQ--V 182
           + +V+ G  H+  ++  G V+TWG     G + Q+            +P RV  L++  +
Sbjct: 330 IVRVSCGEYHTAAISENGEVYTWGL----GSMGQLGHCSLQSGDKELIPRRVVALDRTVI 385

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-------------DTQPRSQPIPVQGL 229
           + ++ G  H+ A+ EDGAL+AWG    GQLG G             D   R+ P+ V   
Sbjct: 386 RDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLRNIPVLVIP- 444

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDI 288
           SG+ LV    G  H+     D  +YGWG   +G+     N+KS+    P  V+   GE +
Sbjct: 445 SGVQLV--TCGHSHTLVSMKDSRIYGWGYNSYGQAA---NEKSTYAWFPSPVDWCVGE-V 498

Query: 289 VQVSCGGTHSVALT 302
            +++ GG HS  LT
Sbjct: 499 RRLAAGGGHSAVLT 512



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 146/336 (43%), Gaps = 67/336 (19%)

Query: 81  IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ-- 138
           +GG     V  +   Y WG N  GQ   + +            + IP+   PKL   Q  
Sbjct: 83  LGGLRVAGVPTKSAIYLWGYNHSGQTARKGKEC---------HLRIPKSLPPKLFKWQDG 133

Query: 139 -------VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLI 185
                  VA G  H+  +  +G ++TWG         G  +    P +V+ LE   VK +
Sbjct: 134 KNLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSV 193

Query: 186 AVGAFHNLALQE---------DGALWAWGNNE---YGQLGTGDTQPR------------- 220
           + GA    A+ E            LW WG N+   Y +L  G   P              
Sbjct: 194 SCGAHCTAAVAEPRENNGTISRSRLWVWGQNQGSDYPRLFWGAFAPNTASGATEQSTITC 253

Query: 221 --SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG---DNDKSSKM 275
             SQ + ++ LS   +  ++ G  H  AL++DG +  WG  E+G+LG G   +  + +++
Sbjct: 254 ASSQFLSLRCLSLEVIHQVSCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGARV 313

Query: 276 VPQKVNLL--AGE--DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           +      L  A E   IV+VSCG  H+ A++ +G ++++G G  G+LG+   + +G    
Sbjct: 314 LNAYARFLDEAPELVKIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHC-SLQSGDKEL 372

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +P  + A       +DR  + + V+CGG H+ A+ E
Sbjct: 373 IPRRVVA-------LDRT-VIRDVSCGGVHSCAVTE 400



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 103/258 (39%), Gaps = 51/258 (19%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
           AWG  E GQLG G        C  + L+  +V +  A                +  P  V
Sbjct: 290 AWGYNEYGQLGRG--------CTSEGLQGARVLNAYA-------------RFLDEAPELV 328

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
                 KIV+ + G +H  A+ + G  Y WG    GQ G    +  D   I RR + +  
Sbjct: 329 ------KIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHCSLQSGDKELIPRRVVALD- 381

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----------------QPWPPGDIKQIS 171
               + ++R V+ GG HS  +T +G ++ WG                       D+   +
Sbjct: 382 ----RTVIRDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLRN 437

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +PV V     V+L+  G  H L   +D  ++ WG N YGQ     +     P PV    G
Sbjct: 438 IPVLVIP-SGVQLVTCGHSHTLVSMKDSRIYGWGYNSYGQAANEKSTYAWFPSPVDWCVG 496

Query: 232 LTLVDIAAGGWHSTALTD 249
             +  +AAGG HS  LTD
Sbjct: 497 -EVRRLAAGGGHSAVLTD 513


>gi|428178434|gb|EKX47309.1| hypothetical protein GUITHDRAFT_137494 [Guillardia theta CCMP2712]
          Length = 432

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 182/398 (45%), Gaps = 56/398 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKV----------RSVVAGSRNS 50
           +A   ++ +WGS + G+ G G + +     V++  EP KV          + V  G  +S
Sbjct: 58  LAGARTLWSWGSADHGRGGSGGHTDAPIFEVIQK-EPEKVEKPVLPAKLIKKVACGGAHS 116

Query: 51  LAICDDGKTKT--------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAY 96
           + + + G+  T              EN            I   A G WH LA   +G+ Y
Sbjct: 117 MIVTESGRLLTCGLNDNGQLGLGNLENASEFEEVKGTESIADVAAGFWHTLAASKKGKLY 176

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDI--VIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
           AWG N++GQ G       DT   L  +   ++  R AP   ++QVA G  HS+ LT++G 
Sbjct: 177 AWGSNKHGQLGHH-----DTAVKLAVEPQEILLLRDAP---IKQVACGSYHSMALTKDGE 228

Query: 155 VWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           V+TWG         G  +   +P RV+ L  E +  I  G  ++ A+   G ++ WG   
Sbjct: 229 VYTWGFGAHGRLGHGSTEDEFMPKRVEALVGENISSIHAGFEYSSAVSTSGKVFVWGYGH 288

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           +  LG GD + +  P+ +   +  ++  +A G +H+ A++  G ++ WG   HG LG G 
Sbjct: 289 FYVLGQGDKKDQLAPVVLDFPT--SIRQLAFGSFHAAAVSHSGMLFTWGHATHGPLGHGL 346

Query: 269 NDKSSKMVPQKVNLLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
              +  + P  ++  A  ++  QV+CG  H++ +T  G +FSFG G  G+LG G  +   
Sbjct: 347 KSPNIILEPTVLDAPAQLQNSKQVACGSQHTLVVTGTGDVFSFGLGGQGQLGLGSDLDHY 406

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +P ++      PR  G  + +      VACG  H +  
Sbjct: 407 EPKQI------PRFVGKSLRQ------VACGLFHCIGF 432



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 32/225 (14%)

Query: 156 WTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
           WT    +   +   +S P+  +      LI  G    + L     LW+WG+ ++G+ G+G
Sbjct: 20  WTMSSAFRHKENSMLSAPLICRLHAGSNLIH-GREQKVTLAGARTLWSWGSADHGRGGSG 78

Query: 216 -----------DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
                        +P     PV  L    +  +A GG HS  +T+ G +   G  ++G+L
Sbjct: 79  GHTDAPIFEVIQKEPEKVEKPV--LPAKLIKKVACGGAHSMIVTESGRLLTCGLNDNGQL 136

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           G G+ + +S+    K      E I  V+ G  H++A ++ G ++++G   HG+LG+    
Sbjct: 137 GLGNLENASEFEEVK----GTESIADVAAGFWHTLAASKKGKLYAWGSNKHGQLGHHDTA 192

Query: 325 T--TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +P E+ +   AP             K VACG  H++A+ +
Sbjct: 193 VKLAVEPQEILLLRDAP------------IKQVACGSYHSMALTK 225


>gi|442319025|ref|YP_007359046.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
 gi|441486667|gb|AGC43362.1| RCC1 repeat-containing protein [Myxococcus stipitatus DSM 14675]
          Length = 746

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 138/300 (46%), Gaps = 53/300 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG G+         V  L    V +V AG   SLA+  DG        
Sbjct: 468 TVWAWGGNGSGQLGDGSTTASLIPIQVPGLT--GVAAVAAGDGFSLALKSDGTLWAWGRN 525

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T     P+ V   +  K V  A G  H LA+   G  +AWGGN YGQ G+ 
Sbjct: 526 SSGSLGDGTTTGRTTPALVPNFTGVKAVATAPGADHVLALKTNGTLWAWGGNSYGQLGD- 584

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
                  G +LR+        +P  +    V  +A G  HS+V+   G VWTWG+     
Sbjct: 585 -------GSVLRK-------LSPVFVNLTGVLSIATGSDHSLVVRTGGAVWTWGR----N 626

Query: 166 DIKQI--------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           D  Q+        ++PV+VQG+     +A G  H+L L+ DG LWAWG+N  G+LG G  
Sbjct: 627 DAAQLGDGTGTTRTLPVQVQGVTGATALAAGDRHSLMLRSDGTLWAWGSNSEGELGDGTM 686

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R  P+ V+  +G  +V ++AG  HS A+T DG V+ WG    G+   G+N    K  P
Sbjct: 687 TGRPLPVRVRAPAG--VVALSAGARHSLAMTPDGTVWAWGLNLFGQ--HGNNKWGFKTTP 742



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 148/326 (45%), Gaps = 41/326 (12%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           RN      DG      +P+Q   L  T  V  A G  H LA    G  +AWGGN  GQ G
Sbjct: 424 RNGSGQLGDGSGTQRVVPAQAVGL--TGAVSVASGANHALAAKSDGTVWAWGGNGSGQLG 481

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           +                +IP +      V  VAAG   S+ L  +G +W WG+    G +
Sbjct: 482 DGSTTAS----------LIPIQVPGLTGVAAVAAGDGFSLALKSDGTLWAWGRN-SSGSL 530

Query: 168 KQISV-----PVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              +      P  V     VK +A   GA H LAL+ +G LWAWG N YGQLG G    +
Sbjct: 531 GDGTTTGRTTPALVPNFTGVKAVATAPGADHVLALKTNGTLWAWGGNSYGQLGDGSVLRK 590

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ V  L+G+  + IA G  HS  +   G V+ WGR +  +LG  D   +++ +P +V
Sbjct: 591 LSPVFVN-LTGV--LSIATGSDHSLVVRTGGAVWTWGRNDAAQLG--DGTGTTRTLPVQV 645

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             + G     ++ G  HS+ L  DG ++++G    G LG G    TG+P+ V +  PA  
Sbjct: 646 QGVTGA--TALAAGDRHSLMLRSDGTLWAWGSNSEGELGDG--TMTGRPLPVRVRAPAGV 701

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIV 366
            A            ++ G RH+LA+ 
Sbjct: 702 VA------------LSAGARHSLAMT 715



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 19/282 (6%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG     + P+QV  L++   V+A  G  + +A    G  + WG N YGQ G      D 
Sbjct: 80  DGTHNHRSTPAQVPNLTSVTAVEAGRGN-YSMARRADGSLWVWGYNTYGQLG------DG 132

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T       I +P        V  V+ G  HS+ L  +G VW WG+        G   Q  
Sbjct: 133 TTTSRWSPIPVPGFSG----VSSVSGGYMHSMALKSDGTVWAWGRNADGQLGDGSTTQRL 188

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PVR  GL  V  ++ G   + AL+ DG +W WG+N  G+LG G    R  P  V GL+G
Sbjct: 189 SPVRALGLSLVTSVSAGYDFSAALKADGTVWTWGDNTDGELGNGTLTDRLTPAQVPGLTG 248

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +  V + AG  H  A+  DG V+ WGR + G LG G+     ++ P +V  ++   +  V
Sbjct: 249 V--VFLMAGHSHVMAVKSDGTVWVWGRNDWGVLGLGEGAPIRQLTPTQVPGIS--QVAFV 304

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             G  ++VAL  DG ++ +G  ++G+LG G       P ++P
Sbjct: 305 DSGEHYTVALKTDGTLWGWGYNNYGQLGEGTGGVKYLPTQLP 346



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 155/341 (45%), Gaps = 44/341 (12%)

Query: 10  WGSGEDG--QLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI-------------- 53
           WG+G +G  QLG G+  +R  V   +A+      SV +G+ ++LA               
Sbjct: 420 WGAGRNGSGQLGDGSGTQR--VVPAQAVGLTGAVSVASGANHALAAKSDGTVWAWGGNGS 477

Query: 54  --CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T    IP QV  L+    V A  G    LA+   G  +AWG N  G  G+   
Sbjct: 478 GQLGDGSTTASLIPIQVPGLTGVAAVAAGDG--FSLALKSDGTLWAWGRNSSGSLGDGTT 535

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
                        ++P     K +    A G  H + L   G +W WG         G +
Sbjct: 536 TGR------TTPALVPNFTGVKAVA--TAPGADHVLALKTNGTLWAWGGNSYGQLGDGSV 587

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            +   PV V  L  V  IA G+ H+L ++  GA+W WG N+  QLG G    R+ P+ VQ
Sbjct: 588 LRKLSPVFVN-LTGVLSIATGSDHSLVVRTGGAVWTWGRNDAAQLGDGTGTTRTLPVQVQ 646

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           G++G T   +AAG  HS  L  DG ++ WG    G LG  D   + + +P +V   AG  
Sbjct: 647 GVTGATA--LAAGDRHSLMLRSDGTLWAWGSNSEGELG--DGTMTGRPLPVRVRAPAG-- 700

Query: 288 IVQVSCGGTHSVALTRDGHIFSFG---RGDHGRLGYGRKVT 325
           +V +S G  HS+A+T DG ++++G    G HG   +G K T
Sbjct: 701 VVALSAGARHSLAMTPDGTVWAWGLNLFGQHGNNKWGFKTT 741



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 171/372 (45%), Gaps = 48/372 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  ++ AWG   DGQLG G+  +R  +  V+AL    V SV AG   S A+  DG   
Sbjct: 162 LKSDGTVWAWGRNADGQLGDGSTTQR--LSPVRALGLSLVTSVSAGYDFSAALKADGTVW 219

Query: 59  -------------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        T T+ + P+QV  L+    + A  G  H +AV   G  + WG N++G
Sbjct: 220 TWGDNTDGELGNGTLTDRLTPAQVPGLTGVVFLMA--GHSHVMAVKSDGTVWVWGRNDWG 277

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
             G         G  +R+  + P +      V  V +G  ++V L  +G +W WG     
Sbjct: 278 VLGL------GEGAPIRQ--LTPTQVPGISQVAFVDSGEHYTVALKTDGTLWGWGY---- 325

Query: 165 GDIKQIS--------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
            +  Q+         +P ++ GL QV  + VG +H +A+++DG  WAWG ++  Q     
Sbjct: 326 NNYGQLGEGTGGVKYLPTQLPGLTQVATLGVGRYHAMAIKQDGTAWAWGLHDAYQYAN-V 384

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T+P S        +G   +    G + +  L  DG V+G GR   G+L  GD   + ++V
Sbjct: 385 TRPDSAVAVATQFTG--ALRPVGGLYETLVLKADGTVWGAGRNGSGQL--GDGSGTQRVV 440

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-IN 335
           P +   L G   V V+ G  H++A   DG ++++G    G+LG G    +  P++VP + 
Sbjct: 441 PAQAVGLTGA--VSVASGANHALAAKSDGTVWAWGGNGSGQLGDGSTTASLIPIQVPGLT 498

Query: 336 IPAPRNAGDGVD 347
             A   AGDG  
Sbjct: 499 GVAAVAAGDGFS 510



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 148/330 (44%), Gaps = 39/330 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREW------VCVVKALEP----YKVRSVVAGS-----RNS 50
           ++ +WG+   G+LG G +  R        +  V A+E     Y +     GS      N+
Sbjct: 66  TVWSWGTNYGGELGDGTHNHRSTPAQVPNLTSVTAVEAGRGNYSMARRADGSLWVWGYNT 125

Query: 51  LAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                DG T +   P  V   S    V    G  H +A+   G  +AWG N  GQ G+  
Sbjct: 126 YGQLGDGTTTSRWSPIPVPGFSGVSSVSG--GYMHSMALKSDGTVWAWGRNADGQLGD-- 181

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGD 166
                 G   +R  + P R     +V  V+AG   S  L  +G VWTWG         G 
Sbjct: 182 ------GSTTQR--LSPVRALGLSLVTSVSAGYDFSAALKADGTVWTWGDNTDGELGNGT 233

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           +     P +V GL  V  +  G  H +A++ DG +W WG N++G LG G+  P  Q  P 
Sbjct: 234 LTDRLTPAQVPGLTGVVFLMAGHSHVMAVKSDGTVWVWGRNDWGVLGLGEGAPIRQLTPT 293

Query: 227 Q--GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
           Q  G+S +  VD  +G  ++ AL  DG ++GWG   +G+LG G      K +P ++  L 
Sbjct: 294 QVPGISQVAFVD--SGEHYTVALKTDGTLWGWGYNNYGQLGEGTG--GVKYLPTQLPGL- 348

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
              +  +  G  H++A+ +DG  +++G  D
Sbjct: 349 -TQVATLGVGRYHAMAIKQDGTAWAWGLHD 377



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 105/212 (49%), Gaps = 11/212 (5%)

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQV 182
           P   + +L  +   +  +H++ L  +G VW+WG  +      G     S P +V  L  V
Sbjct: 39  PTTQSARLAPQDTLSLQSHTLWLKPDGTVWSWGTNYGGELGDGTHNHRSTPAQVPNLTSV 98

Query: 183 KLIAVG-AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
             +  G   +++A + DG+LW WG N YGQLG G T  R  PIPV G SG++   ++ G 
Sbjct: 99  TAVEAGRGNYSMARRADGSLWVWGYNTYGQLGDGTTTSRWSPIPVPGFSGVS--SVSGGY 156

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            HS AL  DG V+ WGR   G+LG  D   + ++ P  V  L    +  VS G   S AL
Sbjct: 157 MHSMALKSDGTVWAWGRNADGQLG--DGSTTQRLSP--VRALGLSLVTSVSAGYDFSAAL 212

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             DG ++++G    G LG G       P +VP
Sbjct: 213 KADGTVWTWGDNTDGELGNGTLTDRLTPAQVP 244



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 162/386 (41%), Gaps = 71/386 (18%)

Query: 29  VCVVKALEPYKVRSVVAGS-----RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGG 83
           V  V + E Y V     G+      N+     +G    + +P+Q+  L  T++    +G 
Sbjct: 301 VAFVDSGEHYTVALKTDGTLWGWGYNNYGQLGEGTGGVKYLPTQLPGL--TQVATLGVGR 358

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD--------TGR-----------ILRRDI 124
           +H +A+   G A+AWG ++  Q      R D         TG            +L+ D 
Sbjct: 359 YHAMAIKQDGTAWAWGLHDAYQYANV-TRPDSAVAVATQFTGALRPVGGLYETLVLKADG 417

Query: 125 VI----------------PQRCAPKLIV-----RQVAAGGTHSVVLTREGHVWTWGQ--- 160
            +                 QR  P   V       VA+G  H++    +G VW WG    
Sbjct: 418 TVWGAGRNGSGQLGDGSGTQRVVPAQAVGLTGAVSVASGANHALAAKSDGTVWAWGGNGS 477

Query: 161 -PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                G      +P++V GL  V  +A G   +LAL+ DG LWAWG N  G LG G T  
Sbjct: 478 GQLGDGSTTASLIPIQVPGLTGVAAVAAGDGFSLALKSDGTLWAWGRNSSGSLGDGTTTG 537

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           R+ P  V   +G+  V  A G  H  AL  +G ++ WG   +G+L  GD     K+ P  
Sbjct: 538 RTTPALVPNFTGVKAVATAPGADHVLALKTNGTLWAWGGNSYGQL--GDGSVLRKLSPVF 595

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           VNL     ++ ++ G  HS+ +   G ++++GR D  +LG G   T   P++V       
Sbjct: 596 VNL---TGVLSIATGSDHSLVVRTGGAVWTWGRNDAAQLGDGTGTTRTLPVQV------- 645

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
                GV     A  +A G RH+L +
Sbjct: 646 ----QGVTG---ATALAAGDRHSLML 664



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 120/256 (46%), Gaps = 23/256 (8%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-G 143
           H L +   G  ++WG N  G+ G+       T          P +      V  V AG G
Sbjct: 57  HTLWLKPDGTVWSWGTNYGGELGDGTHNHRST----------PAQVPNLTSVTAVEAGRG 106

Query: 144 THSVVLTREGHVWTWGQPW--PPGDIKQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDG 199
            +S+    +G +W WG       GD    S   P+ V G   V  ++ G  H++AL+ DG
Sbjct: 107 NYSMARRADGSLWVWGYNTYGQLGDGTTTSRWSPIPVPGFSGVSSVSGGYMHSMALKSDG 166

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            +WAWG N  GQLG G T  R  P+   GLS +T   ++AG   S AL  DG V+ WG  
Sbjct: 167 TVWAWGRNADGQLGDGSTTQRLSPVRALGLSLVT--SVSAGYDFSAALKADGTVWTWGDN 224

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             G LG G    + ++ P +V  L G  +V +  G +H +A+  DG ++ +GR D G LG
Sbjct: 225 TDGELGNGT--LTDRLTPAQVPGLTG--VVFLMAGHSHVMAVKSDGTVWVWGRNDWGVLG 280

Query: 320 YGRKVTTGQ--PMEVP 333
            G      Q  P +VP
Sbjct: 281 LGEGAPIRQLTPTQVP 296


>gi|357393792|ref|YP_004908633.1| hypothetical protein KSE_69180 [Kitasatospora setae KM-6054]
 gi|311900269|dbj|BAJ32677.1| hypothetical protein KSE_69180 [Kitasatospora setae KM-6054]
          Length = 419

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 162/373 (43%), Gaps = 67/373 (17%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
           AWG+  +GQLG G+ + +        L P  V  +                      +++
Sbjct: 47  AWGNNANGQLGDGSAKTQR-------LTPVSVVGMAG--------------------AEL 79

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
           N +S              LA+   G   AWG N+ GQ G       +       D  +P 
Sbjct: 80  NGISAGGTTSGTTVTGFALALLGNGTVEAWGRNDKGQLGNGTTSATE-------DAAVPG 132

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL 184
             A    V  VAAGG+H++ L ++G V  WG         G     ++PV V GL  VK 
Sbjct: 133 LVAGLTGVEAVAAGGSHALALLKDGTVKAWGNNDKGQLGDGTAVNTNLPVTVAGLSDVKA 192

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGT-----GDTQPRSQPIPV-----QGLSGLTL 234
           IA G   ++AL +DG +  WGNN+ GQLG        T     P P        + GLT 
Sbjct: 193 IAAGDAFSIALLKDGTVKTWGNNDKGQLGVTPLPVSSTAAVPAPTPATRNTAMSIPGLTT 252

Query: 235 VD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           V  I AG  H+ AL  DG VY WG  + G+LG  D+   +K  P  V  +   D+V ++ 
Sbjct: 253 VKGITAGASHALALLADGHVYAWGLNDKGQLG--DDTIVNKPYPVPVQEV--TDVVALAG 308

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G THS+AL +D  + ++G  D G++G G   TT +   VP+    P  AG         +
Sbjct: 309 GATHSLALLQDHTLRAWGANDKGQIGDG--TTTQRNTSVPV----PGVAG--------VE 354

Query: 354 LVACGGRHTLAIV 366
            +A G  H LA++
Sbjct: 355 AIAAGAAHNLAVL 367



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 148/323 (45%), Gaps = 37/323 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDDGKTKT--- 61
           ++ AWG  + GQLG G     E   V   +     V +V AG  ++LA+  DG  K    
Sbjct: 105 TVEAWGRNDKGQLGNGTTSATEDAAVPGLVAGLTGVEAVAAGGSHALALLKDGTVKAWGN 164

Query: 62  -------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         N+P  V  LS+ K + A  G    +A+   G    WG N+ GQ G 
Sbjct: 165 NDKGQLGDGTAVNTNLPVTVAGLSDVKAIAA--GDAFSIALLKDGTVKTWGNNDKGQLGV 222

Query: 109 EPERKDDTGRI-----LRRDIVIPQRCAPKL-IVRQVAAGGTHSVVLTREGHVWTWG--Q 160
            P     T  +       R+  +     P L  V+ + AG +H++ L  +GHV+ WG   
Sbjct: 223 TPLPVSSTAAVPAPTPATRNTAM---SIPGLTTVKGITAGASHALALLADGHVYAWGLND 279

Query: 161 PWPPGD--IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               GD  I     PV VQ +  V  +A GA H+LAL +D  L AWG N+ GQ+G G T 
Sbjct: 280 KGQLGDDTIVNKPYPVPVQEVTDVVALAGGATHSLALLQDHTLRAWGANDKGQIGDGTTT 339

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+  +PV G++G+    IAAG  H+ A+  DG V  WG  + G+L  GD   + +  P 
Sbjct: 340 QRNTSVPVPGVAGVEA--IAAGAAHNLAVLADGTVQAWGLNDKGQL--GDGTTTQRNTPV 395

Query: 279 KVNLLAGE-DIVQVSCGGTHSVA 300
           +V   +G   +V     G  S+A
Sbjct: 396 QVLAKSGSVSLVSAPSNGNFSLA 418



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 35/291 (12%)

Query: 59  TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
           T+   +P  V  L+  + V A  GG H LA+   G   AWG N+ GQ G+      +   
Sbjct: 125 TEDAAVPGLVAGLTGVEAVAA--GGSHALALLKDGTVKAWGNNDKGQLGDGTAVNTN--- 179

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---------PWPPGDIKQ 169
                  +P   A    V+ +AAG   S+ L ++G V TWG          P P      
Sbjct: 180 -------LPVTVAGLSDVKAIAAGDAFSIALLKDGTVKTWGNNDKGQLGVTPLPVSSTAA 232

Query: 170 ISVP--------VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           +  P        + + GL  VK I  GA H LAL  DG ++AWG N+ GQLG      + 
Sbjct: 233 VPAPTPATRNTAMSIPGLTTVKGITAGASHALALLADGHVYAWGLNDKGQLGDDTIVNKP 292

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+PVQ ++   +V +A G  HS AL  D  +  WG  + G++G G   + +  VP  V 
Sbjct: 293 YPVPVQEVT--DVVALAGGATHSLALLQDHTLRAWGANDKGQIGDGTTTQRNTSVP--VP 348

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +AG  +  ++ G  H++A+  DG + ++G  D G+LG G       P++V
Sbjct: 349 GVAG--VEAIAAGAAHNLAVLADGTVQAWGLNDKGQLGDGTTTQRNTPVQV 397



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 132/314 (42%), Gaps = 73/314 (23%)

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA------------ 141
           R  AWG N  GQ G+   +               QR  P  +V    A            
Sbjct: 44  RLRAWGNNANGQLGDGSAKT--------------QRLTPVSVVGMAGAELNGISAGGTTS 89

Query: 142 ---GGTHSVVLTREGHVWTWGQPWPPGDIKQI-----------SVPVRVQGLEQVKLIAV 187
                  ++ L   G V  WG+     D  Q+           +VP  V GL  V+ +A 
Sbjct: 90  GTTVTGFALALLGNGTVEAWGR----NDKGQLGNGTTSATEDAAVPGLVAGLTGVEAVAA 145

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LAL +DG + AWGNN+ GQLG G     + P+ V GLS +    IAAG   S AL
Sbjct: 146 GGSHALALLKDGTVKAWGNNDKGQLGDGTAVNTNLPVTVAGLSDVKA--IAAGDAFSIAL 203

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKM-----VPQKVNL---LAGEDIVQ-VSCGGTHS 298
             DG V  WG  + G+LG      SS        P   N    + G   V+ ++ G +H+
Sbjct: 204 LKDGTVKTWGNNDKGQLGVTPLPVSSTAAVPAPTPATRNTAMSIPGLTTVKGITAGASHA 263

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC- 357
           +AL  DGH++++G  D G+LG    V   +P  VP+              + +  +VA  
Sbjct: 264 LALLADGHVYAWGLNDKGQLGDDTIVN--KPYPVPV--------------QEVTDVVALA 307

Query: 358 -GGRHTLAIVEWQT 370
            G  H+LA+++  T
Sbjct: 308 GGATHSLALLQDHT 321



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 14/176 (7%)

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIP 225
           +  +++P  V GL  V   A+ A    A   D  L AWGNN  GQLG G  +  R  P+ 
Sbjct: 13  LPAVTLPAMVAGLTLVCTTALPA--GTASAYDLRLRAWGNNANGQLGDGSAKTQRLTPVS 70

Query: 226 VQGLSGLTLVDIAA--------GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS-SKMV 276
           V G++G  L  I+A            + AL  +G V  WGR + G+LG G    +    V
Sbjct: 71  VVGMAGAELNGISAGGTTSGTTVTGFALALLGNGTVEAWGRNDKGQLGNGTTSATEDAAV 130

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           P  V  L G  +  V+ GG+H++AL +DG + ++G  D G+LG G  V T  P+ V
Sbjct: 131 PGLVAGLTG--VEAVAAGGSHALALLKDGTVKAWGNNDKGQLGDGTAVNTNLPVTV 184


>gi|255549098|ref|XP_002515604.1| Williams-Beuren syndrome chromosome region 16 protein, putative
           [Ricinus communis]
 gi|223545242|gb|EEF46749.1| Williams-Beuren syndrome chromosome region 16 protein, putative
           [Ricinus communis]
          Length = 374

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 138/295 (46%), Gaps = 41/295 (13%)

Query: 90  DDQGRAYA--WGGNEYGQCGEEPERKDDTGRILR--RDIVIPQRCAPKLIVRQVAAGGTH 145
            + G+ YA  WG  ++G+ G        TG +    R  ++   C     ++ +A GG H
Sbjct: 16  SEAGKRYAAVWGNGDFGRLG--------TGSLDSQWRPKLLLSSCFANHSLKSIACGGAH 67

Query: 146 SVVLTREGHVWT-----WGQPWPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDG 199
           ++ LT  G V+      +GQ    G++   + PV+V GL+ ++  I+ G  H+ A+  DG
Sbjct: 68  TLFLTETGCVYATGLNDFGQLGISGNLSYTTEPVKVSGLQKEIMQISAGYHHSCAITVDG 127

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            L+ WG N  GQLG G    R  P+P  V+ L+GLT+  +A G  HS A+TD GE   WG
Sbjct: 128 ELYMWGRNSNGQLGLGKKAQRIVPLPTKVEYLNGLTIKLVALGSEHSIAVTDRGEALSWG 187

Query: 258 RGEHGRLGFGDND-------KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            G  GRLG  +          +S+  P+ +  L    +  V+ G  HS  +  +G +F F
Sbjct: 188 LGGFGRLGHSNQSGTFRFWTSTSEYTPRSIKKLEEVKVKSVAAGLLHSACIDVNGSVFVF 247

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G     R G+G  +      E+P            V +   A  V+CGG HT  +
Sbjct: 248 GEVSVDRTGFGEAIGA----EIP----------SMVGKLPCANEVSCGGYHTCVV 288



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 14/166 (8%)

Query: 204 WGNNEYGQLGTG--DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           WGN ++G+LGTG  D+Q R + +     +  +L  IA GG H+  LT+ G VY  G  + 
Sbjct: 26  WGNGDFGRLGTGSLDSQWRPKLLLSSCFANHSLKSIACGGAHTLFLTETGCVYATGLNDF 85

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G+LG   N  S    P KV+ L  E I+Q+S G  HS A+T DG ++ +GR  +G+LG G
Sbjct: 86  GQLGISGN-LSYTTEPVKVSGLQKE-IMQISAGYHHSCAITVDGELYMWGRNSNGQLGLG 143

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +K     P+      P      +G+      KLVA G  H++A+ +
Sbjct: 144 KKAQRIVPL------PTKVEYLNGLT----IKLVALGSEHSIAVTD 179



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 134/307 (43%), Gaps = 49/307 (15%)

Query: 10  WGSGEDGQLGIG--NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENI--- 64
           WG+G+ G+LG G  +++ R  + +      + ++S+  G  ++L + + G      +   
Sbjct: 26  WGNGDFGRLGTGSLDSQWRPKLLLSSCFANHSLKSIACGGAHTLFLTETGCVYATGLNDF 85

Query: 65  --------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                         P +V+ L   +I+Q + G  H  A+   G  Y WG N  GQ G   
Sbjct: 86  GQLGISGNLSYTTEPVKVSGLQK-EIMQISAGYHHSCAITVDGELYMWGRNSNGQLG--- 141

Query: 111 ERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWG--------Q 160
                 G+  +R + +P +      L ++ VA G  HS+ +T  G   +WG         
Sbjct: 142 -----LGKKAQRIVPLPTKVEYLNGLTIKLVALGSEHSIAVTDRGEALSWGLGGFGRLGH 196

Query: 161 PWPPGDIKQIS-----VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLG 213
               G  +  +      P  ++ LE+VK+  +A G  H+  +  +G+++ +G     + G
Sbjct: 197 SNQSGTFRFWTSTSEYTPRSIKKLEEVKVKSVAAGLLHSACIDVNGSVFVFGEVSVDRTG 256

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            G+      P  V  L      +++ GG+H+  +T  GE+Y WG  E+G LG G  +  S
Sbjct: 257 FGEAIGAEIPSMVGKLPCAN--EVSCGGYHTCVVTSGGELYAWGVNENGCLGIGSFN--S 312

Query: 274 KMVPQKV 280
              P++V
Sbjct: 313 LHAPERV 319



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 104/260 (40%), Gaps = 41/260 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR-------SVVAGSRNSLAI 53
           +  T  + A G  + GQLGI  N       +    EP KV         + AG  +S AI
Sbjct: 71  LTETGCVYATGLNDFGQLGISGN-------LSYTTEPVKVSGLQKEIMQISAGYHHSCAI 123

Query: 54  CDDGKT---------------KTENI---PSQVNALSNTKIVQAAIGGWHCLAVDDQGRA 95
             DG+                K + I   P++V  L+   I   A+G  H +AV D+G A
Sbjct: 124 TVDGELYMWGRNSNGQLGLGKKAQRIVPLPTKVEYLNGLTIKLVALGSEHSIAVTDRGEA 183

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTRE 152
            +WG   +G+ G     +  T R          R   KL    V+ VAAG  HS  +   
Sbjct: 184 LSWGLGGFGRLGHS--NQSGTFRFWTSTSEYTPRSIKKLEEVKVKSVAAGLLHSACIDVN 241

Query: 153 GHVWTWGQPWPP----GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           G V+ +G+        G+     +P  V  L     ++ G +H   +   G L+AWG NE
Sbjct: 242 GSVFVFGEVSVDRTGFGEAIGAEIPSMVGKLPCANEVSCGGYHTCVVTSGGELYAWGVNE 301

Query: 209 YGQLGTGDTQPRSQPIPVQG 228
            G LG G       P  VQG
Sbjct: 302 NGCLGIGSFNSLHAPERVQG 321


>gi|444730943|gb|ELW71312.1| putative E3 ubiquitin-protein ligase HERC1 [Tupaia chinensis]
          Length = 4409

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 366 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 417

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 418 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 477

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 478 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 530

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 531 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 590

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 591 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 648

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 649 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 702

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I    + G  H+LA
Sbjct: 703 --PITKPKKVSGLDGIAIQQI----SAGTSHSLA 730



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 63/337 (18%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 3585 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 3619

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 3620 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 3671

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 3672 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERV-- 3718

Query: 179  LEQVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
                   A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ +  +
Sbjct: 3719 -------ACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIKKV 3771

Query: 238  AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
            A G   S ALT DG VY +G+     +G  +    +   PQ+V +LAG  I  V+ G  H
Sbjct: 3772 ACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGAEH 3829

Query: 298  SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            ++AL   G ++++G    G+LG G      +P  V +
Sbjct: 3830 TLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 3866



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 144/319 (45%), Gaps = 72/319 (22%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3538 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 3586

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 3587 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 3646

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG- 265
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 3647 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 3706

Query: 266  -------------------------------FGDND--------KSSKMVPQKVNLLAGE 286
                                           FGD D         ++K  PQKV++L G 
Sbjct: 3707 GNTSNKKLPERVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGI 3766

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
             I +V+CG   SVALT+DGH+++FG+     L  GR     +P +VP+          GV
Sbjct: 3767 GIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQVPVLA--------GV 3818

Query: 347  DRRWIAKLVACGGRHTLAI 365
                + + VA G  HTLA+
Sbjct: 3819 ----VIEDVAVGAEHTLAL 3833



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 469 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 528

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 529 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 586

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 587 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 638

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 639 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 698

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 699 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 745



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 421 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 479

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 480 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 539

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 540 RLGH----GDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 589

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 590 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 647

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  AL+ D EVY WG    G+ G G N       
Sbjct: 648 EATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG-NSTGPITK 706

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 707 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 745



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 133/262 (50%), Gaps = 22/262 (8%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 3633 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 3692

Query: 59   TKTENIPSQ----VNALSNTKIVQ-AAIGGWHCLAVD-DQGRAYAWGGNEYGQCGEEPER 112
              T          +   SN K+ +  A G  H LAV  D    +A+G  +YG+ G     
Sbjct: 3693 LFTFGNGDYGRLGLGNTSNKKLPERVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNST 3752

Query: 113  KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIK 168
               + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ      P G  +
Sbjct: 3753 AKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRAR 3804

Query: 169  QISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
              + P +V  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G T    +P  V
Sbjct: 3805 NHNRPQQVPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLV 3864

Query: 227  QGLSGLTLVDIAAGGWHSTALT 248
              L G  +  I+AG  HS A T
Sbjct: 3865 TVLQGKNVRQISAGRCHSAAWT 3886


>gi|159037172|ref|YP_001536425.1| chromosome condensation regulator RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916007|gb|ABV97434.1| regulator of chromosome condensation RCC1 [Salinispora arenicola
           CNS-205]
          Length = 560

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 155/387 (40%), Gaps = 43/387 (11%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD------------ 55
           +AWG    GQLG G+  +      V       V +V AG+ ++LA+              
Sbjct: 59  LAWGDNASGQLGDGSTADSSMPVAVSLPAGVTVTTVAAGAAHNLAVTSAGTILAWGDNSS 118

Query: 56  ----DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T   + P  V   +   +   A G  H LA+   G   AWG N  GQ G+   
Sbjct: 119 GQLGDGTTSNRHTPVAVGLPTGVTVTAVAAGAAHSLALTSAGTVLAWGANTIGQLGD--- 175

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDI 167
                G  +     +     P +    VAAG  HS+ +T  G V  WG         G  
Sbjct: 176 -----GTTIDSPAPVDVNLPPGVTATAVAAGAAHSLAVTSAGTVLAWGDNASGQLGEGTT 230

Query: 168 KQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                PV V     V   AV  G  H+LA+   GA+ AWG+N  GQLG G T  RS P+ 
Sbjct: 231 IPSRTPVVVSLPSGVTATAVAGGDLHSLAVTSAGAVLAWGSNSSGQLGDGTTADRSTPVA 290

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V    G T+  +AAG   S AL+  G V  WG    G+L  GD   + +  P  V+  AG
Sbjct: 291 VSLSGGTTVTAVAAGIAFSLALSSAGAVLAWGSNSSGQL--GDGTTADRSTPVTVSSPAG 348

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             +  ++ G  H +A+T  G   ++G    G+LG G       P+ V + +         
Sbjct: 349 TTVTAIAGGDAHGLAVTSVGAAIAWGNNSFGQLGDGTNTDRVTPVAVSLPV--------- 399

Query: 346 VDRRWIAKLVACGGRHTLAIVEWQTEE 372
                    +A G  H++A+    T  
Sbjct: 400 --GTTTLTAIAAGAAHSVAVAAPPTSS 424



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 131/319 (41%), Gaps = 33/319 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVV----------------KALEPYKVRSVVAGSRN 49
           +I+AWG    GQLG G    R     V                 +L      +V+A   N
Sbjct: 109 TILAWGDNSSGQLGDGTTSNRHTPVAVGLPTGVTVTAVAAGAAHSLALTSAGTVLAWGAN 168

Query: 50  SLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
           ++    DG T     P  VN          A G  H LAV   G   AWG N  GQ GE 
Sbjct: 169 TIGQLGDGTTIDSPAPVDVNLPPGVTATAVAAGAAHSLAVTSAGTVLAWGDNASGQLGEG 228

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                 T  ++     +P      +    VA G  HS+ +T  G V  WG         G
Sbjct: 229 TTIPSRTPVVVS----LPS----GVTATAVAGGDLHSLAVTSAGAVLAWGSNSSGQLGDG 280

Query: 166 DIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                S PV V   G   V  +A G   +LAL   GA+ AWG+N  GQLG G T  RS P
Sbjct: 281 TTADRSTPVAVSLSGGTTVTAVAAGIAFSLALSSAGAVLAWGSNSSGQLGDGTTADRSTP 340

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V   +G T+  IA G  H  A+T  G    WG    G+LG G N  + ++ P  V+L 
Sbjct: 341 VTVSSPAGTTVTAIAGGDAHGLAVTSVGAAIAWGNNSFGQLGDGTN--TDRVTPVAVSLP 398

Query: 284 AG-EDIVQVSCGGTHSVAL 301
            G   +  ++ G  HSVA+
Sbjct: 399 VGTTTLTAIAAGAAHSVAV 417



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 5/144 (3%)

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           A+  D AL AWG+N  GQLG G T   S P+ V   +G+T+  +AAG  H+ A+T  G +
Sbjct: 52  AVAADTAL-AWGDNASGQLGDGSTADSSMPVAVSLPAGVTVTTVAAGAAHNLAVTSAGTI 110

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
             WG    G+L  GD   S++  P  V L  G  +  V+ G  HS+ALT  G + ++G  
Sbjct: 111 LAWGDNSSGQL--GDGTTSNRHTPVAVGLPTGVTVTAVAAGAAHSLALTSAGTVLAWGAN 168

Query: 314 DHGRLGYGRKVTTGQPMEVPINIP 337
             G+LG G  + +  P++V  N+P
Sbjct: 169 TIGQLGDGTTIDSPAPVDV--NLP 190


>gi|358458193|ref|ZP_09168405.1| regulator of chromosome condensation RCC1 [Frankia sp. CN3]
 gi|357078539|gb|EHI87986.1| regulator of chromosome condensation RCC1 [Frankia sp. CN3]
          Length = 405

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 151/346 (43%), Gaps = 41/346 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------------ 54
           ++ WG+   GQLG G    R  +  V+     ++ +V AG     A+             
Sbjct: 61  VLPWGANGQGQLGDGTTTGR--LTPVQTAGIDEITAVAAGESTGYAMAFGAVQAWGDNSH 118

Query: 55  ---DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T     P QV+ L    +V    G  +  AV   G A+AWG N +G  G+   
Sbjct: 119 NELGDGTTTDRLTPVQVSDL--VDVVAVGAGAHNGYAVRSDGTAWAWGLNNHGSVGD--- 173

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR-EGHVWTWG----QPWPPGD 166
                G  + R    P + +    V  VA GG H+    R +G  W WG         G 
Sbjct: 174 -----GTTINRST--PVQVSDLTDVTAVA-GGLHTGYAVRSDGTAWAWGFNNAGALGDGT 225

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
                 PV+V GL  V  +A G +   AL+ DG +WAWG+N +G LG G T  R  P+PV
Sbjct: 226 TTDSPTPVQVSGLTDVTAVAGGVYRGYALRSDGTVWAWGSNSFGALGDGTTTGRLTPVPV 285

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            GL+   ++ IAAG     AL  DG V+ WG    G+LG G    S    P +V+ L G 
Sbjct: 286 AGLT--QIIAIAAGSNSGYALRGDGTVWAWGYNYEGQLGNGTTTNSPT--PVQVSGLTG- 340

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  ++ G     AL  +G ++++G G  G LG G       P+ V
Sbjct: 341 -VTAIAAGAYTGYALRSNGTVWAWGSGAGGALGNGTTTNRLTPVRV 385



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 135/305 (44%), Gaps = 40/305 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG     +LG G   +R  +  V+  +   V +V AG+ N  A+            
Sbjct: 109 AVQAWGDNSHNELGDGTTTDR--LTPVQVSDLVDVVAVGAGAHNGYAVRSDGTAWAWGLN 166

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGE 108
                 DG T   + P QV+ L++   V A  GG H   AV   G A+AWG N  G  G+
Sbjct: 167 NHGSVGDGTTINRSTPVQVSDLTD---VTAVAGGLHTGYAVRSDGTAWAWGFNNAGALGD 223

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                  T          P + +    V  VA G      L  +G VW WG         
Sbjct: 224 GTTTDSPT----------PVQVSGLTDVTAVAGGVYRGYALRSDGTVWAWGSNSFGALGD 273

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           G       PV V GL Q+  IA G+    AL+ DG +WAWG N  GQLG G T     P+
Sbjct: 274 GTTTGRLTPVPVAGLTQIIAIAAGSNSGYALRGDGTVWAWGYNYEGQLGNGTTTNSPTPV 333

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V GL+G+T   IAAG +   AL  +G V+ WG G  G LG G    ++++ P +V  L+
Sbjct: 334 QVSGLTGVTA--IAAGAYTGYALRSNGTVWAWGSGAGGALGNG--TTTNRLTPVRVTGLS 389

Query: 285 GEDIV 289
           G + +
Sbjct: 390 GINTI 394



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 103/251 (41%), Gaps = 32/251 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVRS---VVAGSRNSLAIC 54
           AWG    G +G G    R     V  L             Y VRS     A   N+    
Sbjct: 162 AWGLNNHGSVGDGTTINRSTPVQVSDLTDVTAVAGGLHTGYAVRSDGTAWAWGFNNAGAL 221

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            DG T     P QV+ L++   V   +  +   A+   G  +AWG N +G  G+      
Sbjct: 222 GDGTTTDSPTPVQVSGLTDVTAVAGGV--YRGYALRSDGTVWAWGSNSFGALGD----GT 275

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
            TGR+       P   A    +  +AAG      L  +G VW WG  +      G     
Sbjct: 276 TTGRL------TPVPVAGLTQIIAIAAGSNSGYALRGDGTVWAWGYNYEGQLGNGTTTNS 329

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             PV+V GL  V  IA GA+   AL+ +G +WAWG+   G LG G T  R  P+ V GLS
Sbjct: 330 PTPVQVSGLTGVTAIAAGAYTGYALRSNGTVWAWGSGAGGALGNGTTTNRLTPVRVTGLS 389

Query: 231 GLTLVDIAAGG 241
           G+    IA GG
Sbjct: 390 GIN--TIAGGG 398


>gi|125821491|ref|XP_698091.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Danio
            rerio]
          Length = 4846

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 145/282 (51%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            + WG   +GQ  E             R+I++P         +QV  G   + V+   G V
Sbjct: 3985 FLWGAGRHGQLAEA-----------GRNILVPTLAPSFSQAQQVVCGQNCTFVIQANGTV 4033

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +++       H++AL E G +++WG+
Sbjct: 4034 SACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQMVTSCGSDGHSMALTESGEVFSWGD 4093

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4094 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFSFGNGDYGRLGL 4153

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P++V+ L G  + QV+CG  H++A++ DG  +++FG GD+G+LG G    
Sbjct: 4154 GNT--SNKKLPERVSALEGHQVGQVACGLNHTLAVSADGMTVWAFGDGDYGKLGLGNSTA 4211

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4212 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4241



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 173/369 (46%), Gaps = 59/369 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S  S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S     DG   
Sbjct: 413 ISSDGSVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRAIKKVSSSKGS-----DG--- 463

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                   H LA   +G  ++WG  +YG+ G          +++
Sbjct: 464 ------------------------HTLAFTSEGEVFSWGDGDYGKLGHGNSSTQKYPKLI 499

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
           +  +          +V  V+AG  HS  ++ +G ++TWG+        GD    ++P  V
Sbjct: 500 QGPL-------QGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGRLGHGDSNSRNIPTLV 552

Query: 177 QGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           + +  V  ++ G+ H +AL +DG  +W++G  + G+LG GDT    +P  V+ L G+ + 
Sbjct: 553 KDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVVEALQGMFIR 612

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            + AG   S ALT  G+VY WG G    LG G ++ ++ + P+ +  LA   +V +S G 
Sbjct: 613 KVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE-ATALRPKLIEELATTRVVDISIGD 669

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           +H +AL+ D  ++++G    G+ G G   +TG     PI  P      DGV  + I+   
Sbjct: 670 SHCLALSHDNEVYAWGNNSMGQCGQGN--STG-----PITKPKKVIGLDGVAIQQISA-- 720

Query: 356 ACGGRHTLA 364
             G  H+LA
Sbjct: 721 --GTSHSLA 727



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 56/334 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            ++ A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4032 TVSACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4066

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4067 --------TQMVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4118

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++++G         G+     +P RV  
Sbjct: 4119 EEVV-----------QMSCGFKHSAVVTSDGKLFSFGNGDYGRLGLGNTSNKKLPERVSA 4167

Query: 179  LE--QVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE  QV  +A G  H LA+  DG  +WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4168 LEGHQVGQVACGLNHTLAVSADGMTVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4227

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG VY +G+     +G  +    +   PQ+V  L G  I  V+ G 
Sbjct: 4228 KVACGTQFSVALTKDGNVYTFGQDR--LIGLPEGRARNHNRPQQVPALTGVFIEDVAVGA 4285

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
             H++ L+  G ++++G    G+LG G      +P
Sbjct: 4286 EHTLTLSSTGDVYAWGSNSEGQLGLGHTNHVREP 4319



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 151/298 (50%), Gaps = 31/298 (10%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  + G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4015 QQVVCGQNCTFVIQANGTVSACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4067

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4068 QMVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4127

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+++GN +YG+LG G+T  +  P  V  L G  +  +A G  H+ A++
Sbjct: 4128 FKHSAVVTSDGKLFSFGNGDYGRLGLGNTSNKKLPERVSALEGHQVGQVACGLNHTLAVS 4187

Query: 249  DDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DG++
Sbjct: 4188 ADGMTVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGNV 4245

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG+     L  GR     +P +VP        A  GV      + VA G  HTL +
Sbjct: 4246 YTFGQDRLIGLPEGRARNHNRPQQVP--------ALTGV----FIEDVAVGAEHTLTL 4291



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 37/279 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG+  T    
Sbjct: 474 VFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEG 533

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEYGQCGE 108
                        NIP+ V  +SN  + + + G  H +A+   GR  +++GG + G+ G 
Sbjct: 534 DFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGH 591

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
                 DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG     G   
Sbjct: 592 -----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGS 643

Query: 169 QISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQPRSQ 222
             +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G+ T P ++
Sbjct: 644 SEATALRPKLIEELATTRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTGPITK 703

Query: 223 PIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 704 PKKVIGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 742



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4080 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4139

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGN 101
                            T  + +P +V+AL   ++ Q A G  H LAV   G   +A+G  
Sbjct: 4140 LFSFGNGDYGRLGLGNTSNKKLPERVSALEGHQVGQVACGLNHTLAVSADGMTVWAFGDG 4199

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++G+V+T+GQ 
Sbjct: 4200 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGNVYTFGQD 4251

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V  L  V +  +AVGA H L L   G ++AWG+N  GQLG G
Sbjct: 4252 RLIGLPEGRARNHNRPQQVPALTGVFIEDVAVGAEHTLTLSSTGDVYAWGSNSEGQLGLG 4311

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  +  L G  +  I+AG  HS A T
Sbjct: 4312 HTNHVREPTLISALQGKNIQQISAGRCHSAAWT 4344


>gi|432092257|gb|ELK24881.1| Putative E3 ubiquitin-protein ligase HERC1 [Myotis davidii]
          Length = 4856

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 163/348 (46%), Gaps = 65/348 (18%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4033 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4067

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4068 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4119

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 4120 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 4168

Query: 179  LEQVKL-----------IAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPV 226
            LE  ++           +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V
Sbjct: 4169 LEGYQIGQARNKSIICSVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKV 4228

Query: 227  QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
              L G+ +  +A G   S ALT DG+VY +G+     +G  +    +   PQ+V +LAG 
Sbjct: 4229 DVLCGIGIKKVACGTQFSVALTKDGQVYTFGQDR--LIGLPEGRARNHNRPQQVPVLAGV 4286

Query: 287  DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             I  V+ G  H++ALT  G I+++G    G+LG G      +P  V +
Sbjct: 4287 VIEDVAVGAEHTLALTSTGDIYAWGSNSEGQLGLGHTNHVREPTLVTV 4334



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 144/291 (49%), Gaps = 44/291 (15%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 3986 YLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 4034

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4035 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4094

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4095 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 4154

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQ---------VSCGGTHSVALTRDGH-IFSFGRGDHG 316
            G+   S+K +P++V  L G  I Q         V+CG  H++A++ DG  +++FG GD+G
Sbjct: 4155 GNT--SNKKLPERVTALEGYQIGQARNKSIICSVACGLNHTLAVSADGSMVWAFGDGDYG 4212

Query: 317  RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +LG G       P +V +        G G+      K VACG + ++A+ +
Sbjct: 4213 KLGLGNSTAKSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4251



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S +LT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLSLTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H +AL+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+      + V+ G  H+LA
Sbjct: 705 --PITKPKKVSGLDGI----AIQQVSAGTSHSLA 732



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 40/308 (12%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4016 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4068

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4069 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4128

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---------TLVDIAA 239
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G           +  +A 
Sbjct: 4129 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQARNKSIICSVAC 4188

Query: 240  GGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   S
Sbjct: 4189 GLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFS 4246

Query: 299  VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
            VALT+DG +++FG+     L  GR     +P +VP+          GV    + + VA G
Sbjct: 4247 VALTKDGQVYTFGQDRLIGLPEGRARNHNRPQQVPVLA--------GV----VIEDVAVG 4294

Query: 359  GRHTLAIV 366
              HTLA+ 
Sbjct: 4295 AEHTLALT 4302



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLSLTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  ++AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQVSAGTSHSLAWTALPRDRQVVAWHR 747



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 137/282 (48%), Gaps = 42/282 (14%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4081 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 4140

Query: 59   ----------------TKTENIPSQVNALSNTKIVQA---------AIGGWHCLAVD-DQ 92
                            T  + +P +V AL   +I QA         A G  H LAV  D 
Sbjct: 4141 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQARNKSIICSVACGLNHTLAVSADG 4200

Query: 93   GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
               +A+G  +YG+ G        + +  + D++    C   + +++VA G   SV LT++
Sbjct: 4201 SMVWAFGDGDYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKD 4252

Query: 153  GHVWTWGQP----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGN 206
            G V+T+GQ      P G  +  + P +V  L  V +  +AVGA H LAL   G ++AWG+
Sbjct: 4253 GQVYTFGQDRLIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGAEHTLALTSTGDIYAWGS 4312

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            N  GQLG G T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4313 NSEGQLGLGHTNHVREPTLVTVLQGKNVRQISAGRCHSAAWT 4354


>gi|145509481|ref|XP_001440679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407907|emb|CAK73282.1| unnamed protein product [Paramecium tetraurelia]
          Length = 401

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 177/395 (44%), Gaps = 49/395 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNN--EEREWVCVVKALEPYKVRSVVAGS----------- 47
           + S   + AWG    GQLGIGN+  +    +  ++ +     +S V+ +           
Sbjct: 26  VFSQEQLYAWGWNNFGQLGIGNSISQYSPQLVPIQDVLFVACKSSVSAAIDKSGKLYTWG 85

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           R+   +  +G+ +  N+PS V  L +      A G +H  A+   G+ Y WG  ++G+ G
Sbjct: 86  RSKFGLLGNGQVENINVPSLVQCLKHLDFKFVACGNYHMAAITTDGQLYTWGNFDHGKLG 145

Query: 108 EEPERKDDTGRILRRDIV----------IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
                 D++ ++  R+            +P+       V+QVA G   +++L+ +G+V++
Sbjct: 146 HS---FDNSAKLPSREKYEYQKNLGSAKLPELVQLNFKVQQVALGDQFTIILSEDGNVYS 202

Query: 158 WG---QPWPPGDIKQISVPV--RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
            G   +       K +  P   ++  L+ +  I  G   ++AL  DG ++AWG+N +GQL
Sbjct: 203 VGLNKKGILGYQTKNVDEPTFKQIPDLKNIVQIDSGTDFSVALDSDGNMFAWGSNYFGQL 262

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           GT        P  ++GL  +     + G     AL+ DG +Y WG G  G+LG      S
Sbjct: 263 GTPSPSVVQTPQQIKGLPKIK--QFSCGEQFIGALSTDGVLYTWGFGGDGQLG----TPS 316

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            + +P    +   ++I +VSCG  H V +     ++  GRG  G+LG G +  +      
Sbjct: 317 KQDIPTPHKIQFDQNIDKVSCGQAH-VGIVSKNKLYMHGRGKEGQLGRGSETESPNSSRY 375

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +P    + V +      +ACGG H+ A+V 
Sbjct: 376 -----SPLLVMENVIK------IACGGSHSFAVVN 399



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 31/203 (15%)

Query: 144 THSVVLTREG-HVWTW---GQPWPPGDIKQIS---VPVRVQGLEQVKLIAVGAFHNLALQ 196
           T S V ++E  + W W   GQ      I Q S   VP+     + V  +A  +  + A+ 
Sbjct: 22  TSSFVFSQEQLYAWGWNNFGQLGIGNSISQYSPQLVPI-----QDVLFVACKSSVSAAID 76

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           + G L+ WG +++G LG G  +  + P  VQ L  L    +A G +H  A+T DG++Y W
Sbjct: 77  KSGKLYTWGRSKFGLLGNGQVENINVPSLVQCLKHLDFKFVACGNYHMAAITTDGQLYTW 136

Query: 257 GRGEHGRLGFGDNDKSSKM----------------VPQKVNLLAGEDIVQVSCGGTHSVA 300
           G  +HG+LG    D S+K+                +P+ V L     + QV+ G   ++ 
Sbjct: 137 GNFDHGKLGH-SFDNSAKLPSREKYEYQKNLGSAKLPELVQL--NFKVQQVALGDQFTII 193

Query: 301 LTRDGHIFSFGRGDHGRLGYGRK 323
           L+ DG+++S G    G LGY  K
Sbjct: 194 LSEDGNVYSVGLNKKGILGYQTK 216


>gi|299469793|emb|CBN76647.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2478

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 172/384 (44%), Gaps = 48/384 (12%)

Query: 10  WGSGED--GQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------ 61
           W  G++  G+LG  +   R+  C+VK  E  +V  V AG+ +++ +C  G+  T      
Sbjct: 234 WTCGQNSYGELGHSDTGTRKTHCLVKPFEGREVVDVAAGNEHTVLLCSTGEVYTAGYNDN 293

Query: 62  ----ENIPSQVNALSNTKI--------VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
               +    +V  L+   I        V A  G  H L V D G+  ++G N  GQ G+ 
Sbjct: 294 GQCGQGTTQRVGVLTRVPIDGGRKAVQVHAYNGCEHTLVVLDDGQMMSFGYNYRGQLGQ- 352

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                  G      +  P R    + V Q +    HSV+    G V+T+G+        G
Sbjct: 353 -------GNTSSEPVPKPVRGLNGIRVTQASCSYYHSVIACDNGEVYTFGRNDFGQLGSG 405

Query: 166 DIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           D+    +P  V+ L  +++  +A G +H +    +  + + G N+YGQLG   T+ + + 
Sbjct: 406 DVIDRKLPCLVESLRGQRITTLACGQYHTVVSTLEIGVQSCGKNDYGQLGLESTESQRKF 465

Query: 224 IPVQG-LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           + V+G L G  +  +  G +H+  LT +  V+G+GR ++G+LG G   +     P  +  
Sbjct: 466 VAVKGKLDGAQVRHVRCGYYHTIVLTAEEHVFGFGRNDYGQLGLGHTTQRV-FGPTIIEG 524

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
              + + ++S G  H+V +  DG +F FGR  HG+LG G       P  V   +      
Sbjct: 525 AQEKHVYRISAGCYHTVLIDADGMLFVFGRNHHGQLGTGDTNERHSPFPVSTFLG----- 579

Query: 343 GDGVDRRWIAKLVACGGRHTLAIV 366
                 + IAK VA G  HT+ + 
Sbjct: 580 ------KRIAK-VAAGFYHTIVLT 596



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 13/296 (4%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDD 91
           ++A   +  R V    +NS        T T      V      ++V  A G  H + +  
Sbjct: 222 LRACSSFHEREVWTCGQNSYGELGHSDTGTRKTHCLVKPFEGREVVDVAAGNEHTVLLCS 281

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y  G N+ GQCG+   ++   G + R    +P     K +      G  H++V+  
Sbjct: 282 TGEVYTAGYNDNGQCGQGTTQR--VGVLTR----VPIDGGRKAVQVHAYNGCEHTLVVLD 335

Query: 152 EGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWG 205
           +G + ++G  +      G+     VP  V+GL  +++   +   +H++   ++G ++ +G
Sbjct: 336 DGQMMSFGYNYRGQLGQGNTSSEPVPKPVRGLNGIRVTQASCSYYHSVIACDNGEVYTFG 395

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            N++GQLG+GD   R  P  V+ L G  +  +A G +H+   T +  V   G+ ++G+LG
Sbjct: 396 RNDFGQLGSGDVIDRKLPCLVESLRGQRITTLACGQYHTVVSTLEIGVQSCGKNDYGQLG 455

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
               +   K V  K   L G  +  V CG  H++ LT + H+F FGR D+G+LG G
Sbjct: 456 LESTESQRKFVAVK-GKLDGAQVRHVRCGYYHTIVLTAEEHVFGFGRNDYGQLGLG 510



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 126/297 (42%), Gaps = 38/297 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           ++++G    GQLG GN         V+ L   +V        +S+  CD+G+  T     
Sbjct: 339 MMSFGYNYRGQLGQGNTSSEPVPKPVRGLNGIRVTQASCSYYHSVIACDNGEVYTFGRND 398

Query: 62  -----------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                        +P  V +L   +I   A G +H +    +    + G N+YGQ G E 
Sbjct: 399 FGQLGSGDVIDRKLPCLVESLRGQRITTLACGQYHTVVSTLEIGVQSCGKNDYGQLGLES 458

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW-----TWGQPWPPG 165
                     +R  V  +       VR V  G  H++VLT E HV+      +GQ     
Sbjct: 459 TES-------QRKFVAVKGKLDGAQVRHVRCGYYHTIVLTAEEHVFGFGRNDYGQLGLGH 511

Query: 166 DIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
             +++  P  ++G ++  V  I+ G +H + +  DG L+ +G N +GQLGTGDT  R  P
Sbjct: 512 TTQRVFGPTIIEGAQEKHVYRISAGCYHTVLIDADGMLFVFGRNHHGQLGTGDTNERHSP 571

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            PV    G  +  +AAG +H+  LT        G  + G       + +S+  P K+
Sbjct: 572 FPVSTFLGKRIAKVAAGFYHTIVLT--------GGDKEGLSDLHSGEATSRFSPYKI 620



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           L A  +FH      +  +W  G N YG+LG  DT  R     V+   G  +VD+AAG  H
Sbjct: 222 LRACSSFH------EREVWTCGQNSYGELGHSDTGTRKTHCLVKPFEGREVVDVAAGNEH 275

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVAL 301
           +  L   GEVY  G  ++G+ G G   +   +   +V +  G   VQV    G  H++ +
Sbjct: 276 TVLLCSTGEVYTAGYNDNGQCGQGTTQRVGVLT--RVPIDGGRKAVQVHAYNGCEHTLVV 333

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             DG + SFG    G+LG G   T+ +P+  P+
Sbjct: 334 LDDGQMMSFGYNYRGQLGQGN--TSSEPVPKPV 364



 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EV+  G+  +G LG   +D  ++     V    G ++V V+ G  H+V L   G +++ G
Sbjct: 232 EVWTCGQNSYGELGH--SDTGTRKTHCLVKPFEGREVVDVAAGNEHTVLLCSTGEVYTAG 289

Query: 312 RGDHGRLGYGRKVTTGQPMEVPIN 335
             D+G+ G G     G    VPI+
Sbjct: 290 YNDNGQCGQGTTQRVGVLTRVPID 313


>gi|326444459|ref|ZP_08219193.1| regulator of chromosome condensation, rcc1 [Streptomyces
           clavuligerus ATCC 27064]
          Length = 416

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 40/285 (14%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT------HSVVLT 150
           +WG N  GQ G           ++ R    P    PK  V+Q+AAG         +V L 
Sbjct: 43  SWGANVTGQLGNA--------TMIDRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALL 94

Query: 151 REGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDG----A 200
            +  VWTWGQ    G +      K I VP RV GL  +  +A G+ H LAL+ +G     
Sbjct: 95  NDNTVWTWGQN-DKGQLGTGLVTKAIPVPGRVPGLNGITQVAAGSLHALALRNNGDPQDG 153

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +WAWG+N +GQLG     P++ P+PVQGL+G   + +A G  HS AL + G +  WG  +
Sbjct: 154 VWAWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGNND 213

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+L  G++      +P +V  L    +V+++ G   S+A   DG I ++G   HG LG 
Sbjct: 214 KGQL--GNDTILLSTIPVEVKNLT-SPVVEIAAGCNFSLARLADGTIKAWGENGHGELGN 270

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+   +  P+ V    P              A+ +  GG H+ A+
Sbjct: 271 GQTANSLTPVSVTGLPPGS------------AERIVAGGNHSYAL 303



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 153/354 (43%), Gaps = 59/354 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAG------SRNSLAICDDGK-- 58
           + +WG+   GQLG     +R     + AL    V+ + AG      S  ++A+ +D    
Sbjct: 41  VQSWGANVTGQLGNATMIDRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALLNDNTVW 100

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAV----DDQGRAYAWG 99
                          TK   +P +V  L+   I Q A G  H LA+    D Q   +AWG
Sbjct: 101 TWGQNDKGQLGTGLVTKAIPVPGRVPGLNG--ITQVAAGSLHALALRNNGDPQDGVWAWG 158

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            N +GQ G+           + + + +P +         VA G  HS+ L   G +  WG
Sbjct: 159 DNIHGQLGDSTN--------VPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWG 210

Query: 160 QPWPPGDIKQI--------SVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                 D  Q+        ++PV V+ L   V  IA G   +LA   DG + AWG N +G
Sbjct: 211 N----NDKGQLGNDTILLSTIPVEVKNLTSPVVEIAAGCNFSLARLADGTIKAWGENGHG 266

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-N 269
           +LG G T     P+ V GL   +   I AGG HS AL  D  VYGWG  + G+L  G  N
Sbjct: 267 ELGNGQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSNDKGQLADGTIN 326

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG--HIFSFGRGDHGRLGYG 321
            ++  M   K+       +  ++ G  + +ALT DG  +I  +G    G+LG G
Sbjct: 327 PRTQAMQASKL-----PKVTSIAAGKDYGIALT-DGNQNIIGWGNNARGQLGSG 374



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 131/304 (43%), Gaps = 53/304 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALE-PYKV------RSVVAGSRNSLAI 53
           + +  ++  WG  + GQLG G         V KA+  P +V        V AGS ++LA+
Sbjct: 93  LLNDNTVWTWGQNDKGQLGTG--------LVTKAIPVPGRVPGLNGITQVAAGSLHALAL 144

Query: 54  CDDGKTK--------------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
            ++G  +                     + +P  V  L+ +  +  A G  H LA+ + G
Sbjct: 145 RNNGDPQDGVWAWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGG 204

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
              AWG N+ GQ G      +DT  +    + +    +P   V ++AAG   S+    +G
Sbjct: 205 TLMAWGNNDKGQLG------NDTILLSTIPVEVKNLTSP---VVEIAAGCNFSLARLADG 255

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNN 207
            +  WG+        G       PV V GL     + I  G  H+ AL  D  ++ WG+N
Sbjct: 256 TIKAWGENGHGELGNGQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSN 315

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGF 266
           + GQL  G   PR+Q +    L  +T   IAAG  +  ALTD  + + GWG    G+LG 
Sbjct: 316 DKGQLADGTINPRTQAMQASKLPKVT--SIAAGKDYGIALTDGNQNIIGWGNNARGQLGS 373

Query: 267 GDND 270
           G  D
Sbjct: 374 GTTD 377



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 95/235 (40%), Gaps = 32/235 (13%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------- 61
           AWG    GQLG   N  +     V+ L      +V  G  +SLA+ + G           
Sbjct: 156 AWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGNNDKG 215

Query: 62  ---------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                      IP +V  L+ + +V+ A G    LA    G   AWG N +G+ G     
Sbjct: 216 QLGNDTILLSTIPVEVKNLT-SPVVEIAAGCNFSLARLADGTIKAWGENGHGELGN---- 270

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
               G+       +     P     ++ AGG HS  L  +  V+ WG     G +   ++
Sbjct: 271 ----GQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSN-DKGQLADGTI 325

Query: 173 PVRVQGLEQVKL-----IAVGAFHNLALQE-DGALWAWGNNEYGQLGTGDTQPRS 221
             R Q ++  KL     IA G  + +AL + +  +  WGNN  GQLG+G T P +
Sbjct: 326 NPRTQAMQASKLPKVTSIAAGKDYGIALTDGNQNIIGWGNNARGQLGSGTTDPHT 380


>gi|375267564|emb|CCD28232.1| regulator of chromosome condensation, partial [Plasmopara viticola]
          Length = 287

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 28/219 (12%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPP------GDIKQISVPVRVQGLEQ----VKLI 185
           V  V+ G  H++ L   G V++WG  W        GD+K +++P +V   EQ    V  I
Sbjct: 48  VVAVSCGSRHTMALAASGAVYSWG--WGSMGQLGHGDLKSVNIPQKVVFFEQNGLKVNYI 105

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLG-------TGDTQPRSQPIPVQGLSGLTLVDIA 238
           + G  H+ A+ +DG L+ WG + +GQLG         ++ P   P+P +GL+   +V ++
Sbjct: 106 SCGGCHSAAVTKDGTLYMWGESHWGQLGLPKEHEAAHESLPVECPMP-EGLTKECIVKVS 164

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFG----DNDKSSKMV----PQKVNLLAGEDIVQ 290
            GG H+ ALT+ G VY WGRG+ G+LG G    +N +   ++    PQ ++   GE +VQ
Sbjct: 165 CGGTHTAALTNHGRVYIWGRGDSGQLGIGSTWFNNTEDESLLRTSRPQLLDGFNGERVVQ 224

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           V+CG  HS A+T  G+++ + + D+G LG G+      P
Sbjct: 225 VACGAFHSAAVTEKGYVYIWXKEDYGMLGIGQSSDXQNP 263



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 114/209 (54%), Gaps = 10/209 (4%)

Query: 167 IKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   + P  + GL+  +++AV  G+ H +AL   GA+++WG    GQLG GD +  + P 
Sbjct: 31  VSAANFPQNIDGLQDEEVVAVSCGSRHTMALAASGAVYSWGWGSMGQLGHGDLKSVNIPQ 90

Query: 225 PVQGL--SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF-GDNDKSSKMVPQKVN 281
            V     +GL +  I+ GG HS A+T DG +Y WG    G+LG   +++ + + +P +  
Sbjct: 91  KVVFFEQNGLKVNYISCGGCHSAAVTKDGTLYMWGESHWGQLGLPKEHEAAHESLPVECP 150

Query: 282 L---LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           +   L  E IV+VSCGGTH+ ALT  G ++ +GRGD G+LG G         E  +    
Sbjct: 151 MPEGLTKECIVKVSCGGTHTAALTNHGRVYIWGRGDSGQLGIGSTWFNNTEDESLLRTSR 210

Query: 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           P+   DG +   + + VACG  H+ A+ E
Sbjct: 211 PQLL-DGFNGERVVQ-VACGAFHSAAVTE 237



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 128/288 (44%), Gaps = 54/288 (18%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN 63
           T ++I +G  +DGQLG G                       A  R  LAI  DG     N
Sbjct: 2   TDAVITFGCNDDGQLGTG-----------------------AKRRPMLAI--DG-VSAAN 35

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
            P  ++ L + ++V  + G  H +A+   G  Y+WG    GQ G    +  +   I ++ 
Sbjct: 36  FPQNIDGLQDEEVVAVSCGSRHTMALAASGAVYSWGWGSMGQLGHGDLKSVN---IPQKV 92

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-W------PPGDIKQISVPVRV 176
           +   Q     L V  ++ GG HS  +T++G ++ WG+  W         +    S+PV  
Sbjct: 93  VFFEQN---GLKVNYISCGGCHSAAVTKDGTLYMWGESHWGQLGLPKEHEAAHESLPVEC 149

Query: 177 ---QGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT----------QPRS 221
              +GL  E +  ++ G  H  AL   G ++ WG  + GQLG G T             S
Sbjct: 150 PMPEGLTKECIVKVSCGGTHTAALTNHGRVYIWGRGDSGQLGIGSTWFNNTEDESLLRTS 209

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           +P  + G +G  +V +A G +HS A+T+ G VY W + ++G LG G +
Sbjct: 210 RPQLLDGFNGERVVQVACGAFHSAAVTEKGYVYIWXKEDYGMLGIGQS 257



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 106/268 (39%), Gaps = 65/268 (24%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A++ ++ +WG G  GQLG                                     G  K
Sbjct: 61  LAASGAVYSWGWGSMGQLG------------------------------------HGDLK 84

Query: 61  TENIPSQVNALSNT--KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
           + NIP +V        K+   + GG H  AV   G  Y WG + +GQ G  P+  +    
Sbjct: 85  SVNIPQKVVFFEQNGLKVNYISCGGCHSAAVTKDGTLYMWGESHWGQLG-LPKEHEAAHE 143

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV------ 172
            L  +  +P+    + IV+ V+ GGTH+  LT  G V+ WG+    GD  Q+ +      
Sbjct: 144 SLPVECPMPEGLTKECIVK-VSCGGTHTAALTNHGRVYIWGR----GDSGQLGIGSTWFN 198

Query: 173 ------------PVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                       P  + G   E+V  +A GAFH+ A+ E G ++ W   +YG LG G + 
Sbjct: 199 NTEDESLLRTSRPQLLDGFNGERVVQVACGAFHSAAVTEKGYVYIWXKEDYGMLGIGQSS 258

Query: 219 PRSQPIPVQG-LSGLTLVDIAAGGWHST 245
               P         ++ + +   GW  T
Sbjct: 259 DXQNPKSASSFFDDISXIXVYPCGWXGT 286



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           DDG++   G G   R     +  S+   PQ ++ L  E++V VSCG  H++AL   G ++
Sbjct: 12  DDGQL---GTGAKRRPMLAIDGVSAANFPQNIDGLQDEEVVAVSCGSRHTMALAASGAVY 68

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           S+G G  G+LG+G   +   P +V           +G+   +I    +CGG H+ A+ +
Sbjct: 69  SWGWGSMGQLGHGDLKSVNIPQKVVF------FEQNGLKVNYI----SCGGCHSAAVTK 117


>gi|449685467|ref|XP_002154638.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like, partial
           [Hydra magnipapillata]
          Length = 1679

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 173/386 (44%), Gaps = 51/386 (13%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDDGK--------- 58
           AWGS    QL  GN ++   +   K  + +K    + AG   + A+ DDG          
Sbjct: 341 AWGSNSSHQLVEGNKDK---ILTPKKNDAFKNAIQLEAGQYCTFALFDDGSLHACGKGSH 397

Query: 59  -------TKTENIPSQVNALS-NTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  + ++    ++N  + N   + ++ G   H LA+   G  Y+WG  E+G+ G  
Sbjct: 398 GKLGLGDSSSKQCLHKLNLFNQNIDQISSSKGSDSHTLALTKNGVVYSWGDGEFGKLGHG 457

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
                   +++R             I+  ++AG  HS  +T++G ++TWG+        G
Sbjct: 458 NVATQKLPKVIRG-------VFKNQIITFISAGSRHSAAITKDGDLYTWGEGEHGRLGHG 510

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPI 224
           D     VP  V+ ++    +A G  H + L +D   +W +G  + G+LG G+T+    P 
Sbjct: 511 DSSIQRVPTLVRSIDAASQVAAGCSHTVVLSKDEMTVWTFGAGDNGKLGHGNTKMEYYPK 570

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V  L G+ +  IAAG   S ALT  G +Y WG G    LG G  D +  ++P+ V  L 
Sbjct: 571 IVDALKGIRIKKIAAGTQCSIALTWTGFIYVWGCGPC--LGVGAAD-AVHLLPKIVESLR 627

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
              IV +S G  H +AL+ D  ++S+G  + G+ G G   T       P+++P    A D
Sbjct: 628 DVHIVDISLGDCHCLALSADHEVYSWGNNNMGQCGLGHCFT-------PVSLPTKVLALD 680

Query: 345 GVDRRWIAKLVACGGRHTLAIVEWQT 370
           G+      + ++ G  H+ A   W T
Sbjct: 681 GIK----IEQISTGTSHSFA---WTT 699



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 131/304 (43%), Gaps = 56/304 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV-AGSRNSLAICDDGKTKTENIP 65
           + +WG GE G+LG GN   ++   V++ +   ++ + + AGSR+S AI  DG        
Sbjct: 443 VYSWGDGEFGKLGHGNVATQKLPKVIRGVFKNQIITFISAGSRHSAAITKDGDL------ 496

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
                                         Y WG  E+G+ G           I R    
Sbjct: 497 ------------------------------YTWGEGEHGRLGH------GDSSIQR---- 516

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTR-EGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
           +P          QVAAG +H+VVL++ E  VWT+G         G+ K    P  V  L+
Sbjct: 517 VPTLVRSIDAASQVAAGCSHTVVLSKDEMTVWTFGAGDNGKLGHGNTKMEYYPKIVDALK 576

Query: 181 --QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
             ++K IA G   ++AL   G ++ WG      +G  D      P  V+ L  + +VDI+
Sbjct: 577 GIRIKKIAAGTQCSIALTWTGFIYVWGCGPCLGVGAADAV-HLLPKIVESLRDVHIVDIS 635

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            G  H  AL+ D EVY WG    G+ G G +  +   +P KV  L G  I Q+S G +HS
Sbjct: 636 LGDCHCLALSADHEVYSWGNNNMGQCGLG-HCFTPVSLPTKVLALDGIKIEQISTGTSHS 694

Query: 299 VALT 302
            A T
Sbjct: 695 FAWT 698



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++  +G+G++G+LG GN +   +  +V AL+  +++ + AG++ S+A+   G        
Sbjct: 546 TVWTFGAGDNGKLGHGNTKMEYYPKIVDALKGIRIKKIAAGTQCSIALTWTGFIYVWGCG 605

Query: 58  -------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                        +P  V +L +  IV  ++G  HCLA+      Y+WG N  GQCG
Sbjct: 606 PCLGVGAADAVHLLPKIVESLRDVHIVDISLGDCHCLALSADHEVYSWGNNNMGQCG 662



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 67/169 (39%)

Query: 252 EVYGWG--------------------------------------------------RGEH 261
           E Y WG                                                  +G H
Sbjct: 338 EAYAWGSNSSHQLVEGNKDKILTPKKNDAFKNAIQLEAGQYCTFALFDDGSLHACGKGSH 397

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC---GGTHSVALTRDGHIFSFGRGDHGRL 318
           G+LG GD+  SSK    K+NL   ++I Q+S      +H++ALT++G ++S+G G+ G+L
Sbjct: 398 GKLGLGDS--SSKQCLHKLNLF-NQNIDQISSSKGSDSHTLALTKNGVVYSWGDGEFGKL 454

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+G   T   P  +            GV +  I   ++ G RH+ AI +
Sbjct: 455 GHGNVATQKLPKVI-----------RGVFKNQIITFISAGSRHSAAITK 492


>gi|344251059|gb|EGW07163.1| putative E3 ubiquitin-protein ligase HERC1 [Cricetulus griseus]
          Length = 1016

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 161/339 (47%), Gaps = 56/339 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 202 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 236

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                   T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 237 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 288

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
           + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 289 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 337

Query: 179 LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           LE  Q+  +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 338 LEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 397

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            +A G   S ALT DG VY +G+     +G  +    +   PQ++ +LAG  I  V+ G 
Sbjct: 398 KVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGA 455

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 456 EHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 494



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 144/283 (50%), Gaps = 35/283 (12%)

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            Y WG   +GQ  E             R++++P         +QV  G   + V+   G 
Sbjct: 154 VYLWGAGRHGQLAEA-----------GRNVMVPATAPSFSQAQQVICGQNCTFVIQANGT 202

Query: 155 VWTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWG 205
           V   G+            D+  ++V   +QG    +L+       H++AL E G +++WG
Sbjct: 203 VLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWG 262

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           + +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG
Sbjct: 263 DGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLG 322

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKV 324
            G+   S+K +P++V  L G  I QV+CG  H++A++ DG  +++FG GD+G+LG G   
Sbjct: 323 LGNT--SNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNST 380

Query: 325 TTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 381 AKSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 411



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 42/316 (13%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           +P+   + S     Q  I G +C   +   G   A G   YG+ G+     DD       
Sbjct: 174 VPATAPSFSQA---QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----H 223

Query: 123 DIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQPWPPGDIKQI--------SV 172
            + +       ++ + V + G+  HS+ LT  G V++WG     GD  ++          
Sbjct: 224 VLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD----GDYGKLGHGNSDRQRR 279

Query: 173 PVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
           P +++ L  E+V  ++ G  H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L 
Sbjct: 280 PRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALE 339

Query: 231 GLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           G  +  +A G  H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I 
Sbjct: 340 GYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIK 397

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
           +V+CG   SVALT+DGH+++FG+     L  GR     +P ++P+       AG  ++  
Sbjct: 398 KVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPV------LAGVVIED- 450

Query: 350 WIAKLVACGGRHTLAI 365
                VA G  HTLA+
Sbjct: 451 -----VAVGAEHTLAL 461



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 33/273 (12%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
           MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 250 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 309

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVD-DQGRAYAWGGN 101
                           T  + +P +V AL   +I Q A G  H LAV  D    +A+G  
Sbjct: 310 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDG 369

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           +YG+ G        + +  + D++    C   + +++VA G   SV LT++GHV+T+GQ 
Sbjct: 370 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGHVYTFGQD 421

Query: 162 ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                P G  +  + P ++  L  V +  +AVGA H LAL   G ++AWG+N  GQLG G
Sbjct: 422 RLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLG 481

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            T    +P  V  L G  +  I+AG  HS A T
Sbjct: 482 HTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 514


>gi|348688463|gb|EGZ28277.1| hypothetical protein PHYSODRAFT_309181 [Phytophthora sojae]
          Length = 4167

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 149/326 (45%), Gaps = 42/326 (12%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAV-DDQGRAYAWGGNEYGQCGEEPERKD 114
           +  +K E++P       + K ++   GG   LAV    G  +  G N+ GQCG       
Sbjct: 488 NSTSKLEHVP-----FFSAKAIRDIAGGNEVLAVVMKDGAVFTCGLNKSGQCG------- 535

Query: 115 DTGRILRRDIV-IPQRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWG-----QPWPPGD 166
             G    R I+  P R    +++  VAA  G  H + +  +G V++WG     Q      
Sbjct: 536 -NGTFEERVIIATPVRALSGIVINMVAAANGCEHMLAVASDGAVYSWGYNDRGQLGLGST 594

Query: 167 IKQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           I +   P  +  L +   +   AV   H+  +  +G L  +G N+ GQLG   TQ +  P
Sbjct: 595 ISKSHTPRMIDSLREKYHITTAAVSYHHSAVVSSNGELLMFGMNDCGQLGLDHTQHQHTP 654

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V  LS   + ++A G +H+ A+T  GEVY +G+ ++G+LG G     +  VP  V   
Sbjct: 655 QLVDSLSSQVITEVACGLYHTIAITSGGEVYSFGKNDYGQLGLG--HARNMKVPTLVKTS 712

Query: 284 AGED---IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            GE    IV VSCG  H+V ++  G + ++GR D+G+LG G K        VP+ + +  
Sbjct: 713 LGESDEKIVAVSCGYYHTVTISEKGKLITWGRNDYGQLGIGSKDHKNSAQYVPLPLSSK- 771

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIV 366
                       K  +CG  HTL ++
Sbjct: 772 -----------IKTASCGCYHTLILM 786



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 31/301 (10%)

Query: 64  IPSQVNALSNTKI--VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRIL 120
           I + V ALS   I  V AA G  H LAV   G  Y+WG N+ GQ G      K  T R++
Sbjct: 545 IATPVRALSGIVINMVAAANGCEHMLAVASDGAVYSWGYNDRGQLGLGSTISKSHTPRMI 604

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-------- 172
                       K  +   A    HS V++  G +  +G      D  Q+ +        
Sbjct: 605 -------DSLREKYHITTAAVSYHHSAVVSSNGELLMFGM----NDCGQLGLDHTQHQHT 653

Query: 173 PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ--- 227
           P  V  L    +  +A G +H +A+   G ++++G N+YGQLG G  +    P  V+   
Sbjct: 654 PQLVDSLSSQVITEVACGLYHTIAITSGGEVYSFGKNDYGQLGLGHARNMKVPTLVKTSL 713

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           G S   +V ++ G +H+  +++ G++  WGR ++G+LG G  D   K   Q V L     
Sbjct: 714 GESDEKIVAVSCGYYHTVTISEKGKLITWGRNDYGQLGIGSKDH--KNSAQYVPLPLSSK 771

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           I   SCG  H++ L  +G +  FGR + G+LG G +  T    ++P+ +P+   A D V 
Sbjct: 772 IKTASCGCYHTLILMSNGRVMVFGRNNKGQLGAGSR--TLPSADLPLPVPSNSLANDEVV 829

Query: 348 R 348
           R
Sbjct: 830 R 830



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 130/282 (46%), Gaps = 45/282 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC-VVKAL-EPYKVRSVVAGSRNSLAICDDGK 58
           +AS  ++ +WG  + GQLG+G+   +     ++ +L E Y + +      +S  +  +G+
Sbjct: 572 VASDGAVYSWGYNDRGQLGLGSTISKSHTPRMIDSLREKYHITTAAVSYHHSAVVSSNGE 631

Query: 59  ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           T+ ++ P  V++LS+  I + A G +H +A+   G  Y++G N+
Sbjct: 632 LLMFGMNDCGQLGLDHTQHQHTPQLVDSLSSQVITEVACGLYHTIAITSGGEVYSFGKND 691

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           YGQ G    R      +++  +        K++   V+ G  H+V ++ +G + TWG+  
Sbjct: 692 YGQLGLGHARNMKVPTLVKTSL---GESDEKIVA--VSCGYYHTVTISEKGKLITWGR-- 744

Query: 163 PPGDIKQI------------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
              D  Q+             VP+ +    ++K  + G +H L L  +G +  +G N  G
Sbjct: 745 --NDYGQLGIGSKDHKNSAQYVPLPLSS--KIKTASCGCYHTLILMSNGRVMVFGRNNKG 800

Query: 211 QLGTGD-TQPRSQ---PIPVQGLSGLTLVDIAAGGWHSTALT 248
           QLG G  T P +    P+P   L+   +V IAAG + S  LT
Sbjct: 801 QLGAGSRTLPSADLPLPVPSNSLANDEVVRIAAGFYSSYILT 842


>gi|340378681|ref|XP_003387856.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like
           [Amphimedon queenslandica]
          Length = 599

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 173/393 (44%), Gaps = 55/393 (13%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           ++  +  WG G+ G+LG  +++ R    VV++L    V  +  G  +++A+   G+    
Sbjct: 160 NSCDLYLWGGGDRGRLGHKDDKPRFLPNVVESLLGQNVTMIACGGSHTIALNSKGQVFSW 219

Query: 60  -------------KTENIPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        +    P  ++  L +  +V  A    H   + + G  Y WG     +
Sbjct: 220 GAGPQGCLGHGNLRDRYSPLMIDGPLRDVNVVHVACYENHSAVISEDGNLYTWG-----K 274

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTW 158
            G      DD+         + ++  P+L+       + QVA G +H++V+  EG V+++
Sbjct: 275 AGPFLGYMDDS---------VTKQTKPRLVDALYGTRIVQVACGRSHTLVIDEEGRVYSF 325

Query: 159 GQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           G         G  K I+ P  V  L  +  ++ G  H+ A+ EDG L+ WG    GQLG 
Sbjct: 326 GINKFGELGQGHDKAITKPTMVPNLVSICKVSCGRHHSAAIDEDGVLFMWGWGARGQLGQ 385

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           G+ +    P PV G +   L D++ G  H+ A+T +G  Y WG     + G   +     
Sbjct: 386 GEPKSLFSPTPVNGFNDQPLEDVSCGYGHTAAITANGVAYCWGDNASSQCGVPSSVYGEL 445

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR-KVTTGQPMEVP 333
             P+ + L +G    Q++CG   +V +T  G +F++G    G+LG G  K T  QPM V 
Sbjct: 446 SSPRGIVLPSGIRPTQINCGANFTVLVTSIGQLFTWGCNMSGQLGNGEAKKTFSQPMPV- 504

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                     + +  + + K+VACG  H   +V
Sbjct: 505 ----------ESLSEKRV-KMVACGEDHIGCLV 526



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 139/292 (47%), Gaps = 42/292 (14%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI--VIPQRCAPKLIVRQVAAGGT 144
           L  D+    Y WGG + G+ G     KDD  R L   +  ++ Q       V  +A GG+
Sbjct: 156 LLKDNSCDLYLWGGGDRGRLGH----KDDKPRFLPNVVESLLGQN------VTMIACGGS 205

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG-LEQVKLIAVGAF--HNLALQE 197
           H++ L  +G V++WG         G+++    P+ + G L  V ++ V  +  H+  + E
Sbjct: 206 HTIALNSKGQVFSWGAGPQGCLGHGNLRDRYSPLMIDGPLRDVNVVHVACYENHSAVISE 265

Query: 198 DGALWAWGNN--EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           DG L+ WG      G +    T+ +++P  V  L G  +V +A G  H+  + ++G VY 
Sbjct: 266 DGNLYTWGKAGPFLGYMDDSVTK-QTKPRLVDALYGTRIVQVACGRSHTLVIDEEGRVYS 324

Query: 256 WGRGEHGRLGFGDNDKSSK--MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           +G  + G LG G +   +K  MVP  V+      I +VSCG  HS A+  DG +F +G G
Sbjct: 325 FGINKFGELGQGHDKAITKPTMVPNLVS------ICKVSCGRHHSAAIDEDGVLFMWGWG 378

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             G+LG G   +   P   P+N         G + + +   V+CG  HT AI
Sbjct: 379 ARGQLGQGEPKSLFSP--TPVN---------GFNDQPLED-VSCGYGHTAAI 418



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 185 IAVGAFHNLALQEDGA--LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
           + +G      L +D +  L+ WG  + G+LG  D +PR  P  V+ L G  +  IA GG 
Sbjct: 146 VQLGTIKTKVLLKDNSCDLYLWGGGDRGRLGHKDDKPRFLPNVVESLLGQNVTMIACGGS 205

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           H+ AL   G+V+ WG G  G LG G+  D+ S ++      L   ++V V+C   HS  +
Sbjct: 206 HTIALNSKGQVFSWGAGPQGCLGHGNLRDRYSPLMID--GPLRDVNVVHVACYENHSAVI 263

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
           + DG+++++G+     LGY     T Q          PR        R +   VACG  H
Sbjct: 264 SEDGNLYTWGKAGP-FLGYMDDSVTKQT--------KPRLVDALYGTRIVQ--VACGRSH 312

Query: 362 TLAIVE 367
           TL I E
Sbjct: 313 TLVIDE 318



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 125/321 (38%), Gaps = 71/321 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKA-LEPYKVRSVVAGSRNSLAICDDGKT 59
           + S   + +WG+G  G LG GN  +R    ++   L    V  V     +S  I +DG  
Sbjct: 210 LNSKGQVFSWGAGPQGCLGHGNLRDRYSPLMIDGPLRDVNVVHVACYENHSAVISEDGNL 269

Query: 60  KT-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
            T                 +  P  V+AL  T+IVQ A G  H L +D++GR Y++G N+
Sbjct: 270 YTWGKAGPFLGYMDDSVTKQTKPRLVDALYGTRIVQVACGRSHTLVIDEEGRVYSFGINK 329

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQ-RCA----------------------------PK 133
           +G+ G+  ++      ++   + I +  C                             PK
Sbjct: 330 FGELGQGHDKAITKPTMVPNLVSICKVSCGRHHSAAIDEDGVLFMWGWGARGQLGQGEPK 389

Query: 134 LI-------------VRQVAAGGTHSVVLTREGHVWTWGQPW------PPGDIKQISVP- 173
            +             +  V+ G  H+  +T  G  + WG         P     ++S P 
Sbjct: 390 SLFSPTPVNGFNDQPLEDVSCGYGHTAAITANGVAYCWGDNASSQCGVPSSVYGELSSPR 449

Query: 174 --VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLS 230
             V   G+   + I  GA   + +   G L+ WG N  GQLG G+ +   SQP+PV+ LS
Sbjct: 450 GIVLPSGIRPTQ-INCGANFTVLVTSIGQLFTWGCNMSGQLGNGEAKKTFSQPMPVESLS 508

Query: 231 GLTLVDIAAGGWHSTALTDDG 251
              +  +A G  H   L   G
Sbjct: 509 EKRVKMVACGEDHIGCLVGHG 529


>gi|328870950|gb|EGG19322.1| regulator of chromosome condensation domain-containing protein
            [Dictyostelium fasciculatum]
          Length = 2003

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 131/290 (45%), Gaps = 46/290 (15%)

Query: 60   KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
            K ++ P +V +L  T I+  ++GG H + +D     Y+WG  +YGQ G       +    
Sbjct: 1234 KHQSTPMRVESLKQTPIMMMSLGGEHTVVIDRSFHIYSWGNGKYGQLGHGVSTPHN---- 1289

Query: 120  LRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQ---------------PW 162
                  +P+R        +  +A G  H++VL   G ++ +G                P 
Sbjct: 1290 ------LPKRIEEFAGQKISSIATGYWHTLVLRSGGDLFAFGSNEHGQLGLNDLKHHLPI 1343

Query: 163  PP----GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
            P      DI     P RV G      I  G  H++     G ++++G N  GQLG G T+
Sbjct: 1344 PTRVNTADIHHAGQPTRVTG------IFCGHSHSVLRTSHGDVYSFGANAKGQLGHGSTE 1397

Query: 219  PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
                P  +QGL G  +  I  G +H+   TD   VY WG+GEH  LG G N   +++VP+
Sbjct: 1398 SCRYPKLIQGLKGKNIKRITCGPYHTVVTTDLDSVYCWGQGEHMCLGTGSN--KNELVPK 1455

Query: 279  KVNLLAGEDIVQVSCGGTHSVALTR-------DGHIFSFGRGDHGRLGYG 321
             V L   + + +V CG  H+  LT+        G+++  G  +HG+LG G
Sbjct: 1456 LVELFVNKRVERVVCGLYHTATLTQPMGDSNTGGNVYICGSSEHGKLGIG 1505



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 29/246 (11%)

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-------KQISVPVRVQGLEQ--VKLIAV 187
            + V+ G  H+ V+T +G ++TWG     G +       K  S P+RV+ L+Q  + ++++
Sbjct: 1197 KSVSCGWEHAAVITVDGELFTWGNN-TSGQLGHGLAAGKHQSTPMRVESLKQTPIMMMSL 1255

Query: 188  GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
            G  H + +     +++WGN +YGQLG G + P + P  ++  +G  +  IA G WH+  L
Sbjct: 1256 GGEHTVVIDRSFHIYSWGNGKYGQLGHGVSTPHNLPKRIEEFAGQKISSIATGYWHTLVL 1315

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL----AGED--IVQVSCGGTHSVAL 301
               G+++ +G  EHG+LG  D  K    +P +VN      AG+   +  + CG +HSV  
Sbjct: 1316 RSGGDLFAFGSNEHGQLGLNDL-KHHLPIPTRVNTADIHHAGQPTRVTGIFCGHSHSVLR 1374

Query: 302  TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
            T  G ++SFG    G+LG+G   +   P  +            G+  + I K + CG  H
Sbjct: 1375 TSHGDVYSFGANAKGQLGHGSTESCRYPKLI-----------QGLKGKNI-KRITCGPYH 1422

Query: 362  TLAIVE 367
            T+   +
Sbjct: 1423 TVVTTD 1428



 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 159/377 (42%), Gaps = 51/377 (13%)

Query: 7    IIAWGSGEDGQLGIG--NNEEREWVCVVKALEPYKVRSVVAGSRNSLAI----------- 53
            +  WG+   GQLG G    + +     V++L+   +  +  G  +++ I           
Sbjct: 1215 LFTWGNNTSGQLGHGLAAGKHQSTPMRVESLKQTPIMMMSLGGEHTVVIDRSFHIYSWGN 1274

Query: 54   -----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                    G +   N+P ++   +  KI   A G WH L +   G  +A+G NE+GQ G 
Sbjct: 1275 GKYGQLGHGVSTPHNLPKRIEEFAGQKISSIATGYWHTLVLRSGGDLFAFGSNEHGQLGL 1334

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLI--------VRQVAAGGTHSVVLTREGHVWTWGQ 160
                       L+  + IP R     I        V  +  G +HSV+ T  G V+++G 
Sbjct: 1335 ND---------LKHHLPIPTRVNTADIHHAGQPTRVTGIFCGHSHSVLRTSHGDVYSFGA 1385

Query: 161  ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                    G  +    P  +QGL+   +K I  G +H +   +  +++ WG  E+  LGT
Sbjct: 1386 NAKGQLGHGSTESCRYPKLIQGLKGKNIKRITCGPYHTVVTTDLDSVYCWGQGEHMCLGT 1445

Query: 215  GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-------DGEVYGWGRGEHGRLGFG 267
            G  +    P  V+      +  +  G +H+  LT         G VY  G  EHG+LG G
Sbjct: 1446 GSNKNELVPKLVELFVNKRVERVVCGLYHTATLTQPMGDSNTGGNVYICGSSEHGKLGIG 1505

Query: 268  DNDKS---SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
             + +S    K  P  +  +   ++V ++ G   +  +T +G ++ +G G HG++G G+  
Sbjct: 1506 GDPRSPSLDKAYPAIIPSINSANVVDLASGAEFNALITSNGALYMWGAGTHGQIGNGKNQ 1565

Query: 325  TTGQPMEVPINIPAPRN 341
             T  P  V ++    +N
Sbjct: 1566 DTWIPTRVSLSSEKNQN 1582



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 141/316 (44%), Gaps = 48/316 (15%)

Query: 73   NTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
            N K  ++   GW H   +   G  + WG N  GQ G         G    +    P R  
Sbjct: 1192 NEKHAKSVSCGWEHAAVITVDGELFTWGNNTSGQLGH--------GLAAGKHQSTPMRVE 1243

Query: 132  P--KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL-- 179
               +  +  ++ GG H+VV+ R  H+++WG     G   Q+        ++P R++    
Sbjct: 1244 SLKQTPIMMMSLGGEHTVVIDRSFHIYSWGN----GKYGQLGHGVSTPHNLPKRIEEFAG 1299

Query: 180  EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG-------- 231
            +++  IA G +H L L+  G L+A+G+NE+GQLG  D +    PIP +  +         
Sbjct: 1300 QKISSIATGYWHTLVLRSGGDLFAFGSNEHGQLGLNDLK-HHLPIPTRVNTADIHHAGQP 1358

Query: 232  LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
              +  I  G  HS   T  G+VY +G    G+LG G  +  S   P+ +  L G++I ++
Sbjct: 1359 TRVTGIFCGHSHSVLRTSHGDVYSFGANAKGQLGHGSTE--SCRYPKLIQGLKGKNIKRI 1416

Query: 292  SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
            +CG  H+V  T    ++ +G+G+H  LG G       P  V +           V++R  
Sbjct: 1417 TCGPYHTVVTTDLDSVYCWGQGEHMCLGTGSNKNELVPKLVELF----------VNKR-- 1464

Query: 352  AKLVACGGRHTLAIVE 367
             + V CG  HT  + +
Sbjct: 1465 VERVVCGLYHTATLTQ 1480



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 87/315 (27%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
            + S   + A+GS E GQLG+ +         +K   P                       
Sbjct: 1315 LRSGGDLFAFGSNEHGQLGLND---------LKHHLP----------------------- 1342

Query: 61   TENIPSQVN------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
               IP++VN      A   T++     G  H +     G  Y++G N  GQ G       
Sbjct: 1343 ---IPTRVNTADIHHAGQPTRVTGIFCGHSHSVLRTSHGDVYSFGANAKGQLGHGST--- 1396

Query: 115  DTGRILRRDIVIPQRCA-PKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP----W 162
                         + C  PKLI       ++++  G  H+VV T    V+ WGQ      
Sbjct: 1397 -------------ESCRYPKLIQGLKGKNIKRITCGPYHTVVTTDLDSVYCWGQGEHMCL 1443

Query: 163  PPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQE-------DGALWAWGNNEYGQLG 213
              G  K   VP  V+    ++V+ +  G +H   L +        G ++  G++E+G+LG
Sbjct: 1444 GTGSNKNELVPKLVELFVNKRVERVVCGLYHTATLTQPMGDSNTGGNVYICGSSEHGKLG 1503

Query: 214  TGDTQPRSQ------PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
             G   PRS       P  +  ++   +VD+A+G   +  +T +G +Y WG G HG++G G
Sbjct: 1504 IGG-DPRSPSLDKAYPAIIPSINSANVVDLASGAEFNALITSNGALYMWGAGTHGQIGNG 1562

Query: 268  DNDKSSKMVPQKVNL 282
             N  +   +P +V+L
Sbjct: 1563 KNQDT--WIPTRVSL 1575


>gi|296196028|ref|XP_002745648.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Callithrix jacchus]
          Length = 1024

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  +  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSMDLGADHMLILSSDGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTAPQIVEHLAGIPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG    +  SK  P  +  L  + +  ++CGG+H+  LT+DG +F+FG G 
Sbjct: 214 SWGKNEFGQLGLDHTE--SKDSPSLIEALDNQKVEFLACGGSHTALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V         AG+ V +      +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLVA------ELAGNRVTQ------IACGRWHTLAYV 311



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 139/286 (48%), Gaps = 41/286 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI    +G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSMDLGADHMLILSSDGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTAPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  + L  I+ G  H++AL   G +++WG NE+GQLG   T+ +  P  ++ L   
Sbjct: 185 -VEHLAGIPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG H+  LT DG ++ +G G+HG+L  G N   +++ P  V  LAG  + Q++
Sbjct: 244 KVEFLACGGSHTALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELAGNRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYG--RKVTTGQPMEVPIN 335
           CG  H++A   D G +FSFG G  G+LG G  R      PM+V  N
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKEGQLGNGGTRDQLIPLPMKVSSN 347



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 24/231 (10%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           RQ+         L R G      Q  P  D  +    +++    ++  + +GA H L L 
Sbjct: 54  RQICCSSGRLAFLERGGAGVQVHQLLPGSDGLRTPKCIKLGKNMKIHSMDLGADHMLILS 113

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            DG  + + N     L       R + I    L    ++ I  G +HS AL+  GE++ W
Sbjct: 114 SDGKPFEYDNYSMKHL-------RFESI----LQEKKIIQITCGDYHSLALSKGGELFAW 162

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G+  HG+LG G    S+   PQ V  LAG  + Q+S G  HS+AL+  G+I+S+G+ + G
Sbjct: 163 GQNLHGQLGVGRKFPSTT-APQIVEHLAGIPLAQISAGEAHSMALSMSGNIYSWGKNEFG 221

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +LG     +   P  +           + +D + + + +ACGG HT  + +
Sbjct: 222 QLGLDHTESKDSPSLI-----------EALDNQKV-EFLACGGSHTALLTQ 260



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 36/219 (16%)

Query: 35  LEPYKVRSVVAGSRNSLAICDDG-----------------KTKTENIPSQVNALSNTKIV 77
           L+  K+  +  G  +SLA+   G                 K  +   P  V  L+   + 
Sbjct: 135 LQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTAPQIVEHLAGIPLA 194

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-EEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           Q + G  H +A+   G  Y+WG NE+GQ G +  E KD    I   D    Q+      V
Sbjct: 195 QISAGEAHSMALSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALD---NQK------V 245

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVKLIAVGA 189
             +A GG+H+ +LT++G ++T+G     G +   S      P  V  L   +V  IA G 
Sbjct: 246 EFLACGGSHTALLTQDGLLFTFGAG-KHGQLGHNSTQNELRPCLVAELAGNRVTQIACGR 304

Query: 190 FHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +H LA   D G ++++G+ + GQLG G T+ +  P+P++
Sbjct: 305 WHTLAYVSDLGKVFSFGSGKEGQLGNGGTRDQLIPLPMK 343



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+ + E ++   +++AL+  KV  +  G  ++  +  DG   
Sbjct: 206 LSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQKVEFLACGGSHTALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELAGNRVTQIACGRWHTLAYVSDLGKVFSFGSGKE 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329


>gi|298713261|emb|CBJ26957.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 530

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 32/345 (9%)

Query: 35  LEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR 94
           ++ ++ R +    +N+      G T   + P+         IV    G      + + G 
Sbjct: 5   IDRFQERELYGFGQNACGELGLGDTLERHTPTLSQTSRGKDIVGVTAGNELTAVLTNTGE 64

Query: 95  AYAWGGNEYGQCG------EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
            Y+ G N  GQCG        PE      ++  R+     R A ++ +     G  H VV
Sbjct: 65  VYSCGYNSEGQCGIGEIDETVPEMVPSLTKVTLREPSF--RPAGRVSLVHSGNGSEHLVV 122

Query: 149 LTREGHVWTWGQ----PWPPGDI-KQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGAL 201
           +T EG + T G+        G++ K  S+P  V G    +V  +A    H + + +D   
Sbjct: 123 VTEEGELQTCGRNNSGQLGHGEVGKGYSLPRPVAGFAGYRVTKVACSYSHTVVVTDDDRT 182

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           W +G N YGQLG GD   RS P  +    GL ++ +A G +H+      G +Y +G+ +H
Sbjct: 183 WTFGGNGYGQLGHGDHSSRSAPAALACFQGLGVLSVACGVYHTVVSVASGGLYSFGKNDH 242

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIV-QVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           G+LG    +  S+  P  V   A   +V Q++CG  H+VAL+R G + +FGR D+G+LG 
Sbjct: 243 GQLGLEGGE--SRFTP--VQHRACTSVVEQLACGYYHTVALSRAGEVVAFGRNDYGQLGL 298

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G + +T Q  +VP          D    R I   VACG  HT+++
Sbjct: 299 GHRESTWQGGQVP----------DLAGLRIIQ--VACGSYHTISL 331



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 177/396 (44%), Gaps = 62/396 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           +  +G    G+LG+G+  ER    + +      +  V AG+  +  + + G+  +     
Sbjct: 13  LYGFGQNACGELGLGDTLERHTPTLSQTSRGKDIVGVTAGNELTAVLTNTGEVYSCGYNS 72

Query: 62  ----------ENIPSQVNALSNT-------------KIVQAAIGGWHCLAVDDQGRAYAW 98
                     E +P  V +L+                +V +  G  H + V ++G     
Sbjct: 73  EGQCGIGEIDETVPEMVPSLTKVTLREPSFRPAGRVSLVHSGNGSEHLVVVTEEGELQTC 132

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N  GQ G     K   G  L R    P        V +VA   +H+VV+T +   WT+
Sbjct: 133 GRNNSGQLGHGEVGK---GYSLPR----PVAGFAGYRVTKVACSYSHTVVVTDDDRTWTF 185

Query: 159 GQ----PWPPGDIKQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
           G         GD    S P  +   QGL  V  +A G +H +     G L+++G N++GQ
Sbjct: 186 GGNGYGQLGHGDHSSRSAPAALACFQGL-GVLSVACGVYHTVVSVASGGLYSFGKNDHGQ 244

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG    + R  P+  +  + + +  +A G +H+ AL+  GEV  +GR ++G+LG G  + 
Sbjct: 245 LGLEGGESRFTPVQHRACTSV-VEQLACGYYHTVALSRAGEVVAFGRNDYGQLGLGHRES 303

Query: 272 S--SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +     VP     LAG  I+QV+CG  H+++L  +G ++ FGR +HG+LG G +    +P
Sbjct: 304 TWQGGQVPD----LAGLRIIQVACGSYHTISLDDEGRVYPFGRNNHGQLGTGTREDACRP 359

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             V           +G+ + ++ + VA G  HTL +
Sbjct: 360 CFV-----------EGLSQSFVCQ-VAAGFYHTLCL 383



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 154/340 (45%), Gaps = 52/340 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEER--EWVCVVK-------ALEPYKVRSVVA---GSR 48
           + +T  + + G   +GQ GIG  +E   E V  +        +  P    S+V    GS 
Sbjct: 59  LTNTGEVYSCGYNSEGQCGIGEIDETVPEMVPSLTKVTLREPSFRPAGRVSLVHSGNGSE 118

Query: 49  NSLAICDDGKTKT-----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDD 91
           + + + ++G+ +T                  ++P  V   +  ++ + A    H + V D
Sbjct: 119 HLVVVTEEGELQTCGRNNSGQLGHGEVGKGYSLPRPVAGFAGYRVTKVACSYSHTVVVTD 178

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
             R + +GGN YGQ G         G    R       C   L V  VA G  H+VV   
Sbjct: 179 DDRTWTFGGNGYGQLGH--------GDHSSRSAPAALACFQGLGVLSVACGVYHTVVSVA 230

Query: 152 EGHVWTWGQPWPPGDIKQISV--------PVRVQGLEQ-VKLIAVGAFHNLALQEDGALW 202
            G ++++G+     D  Q+ +        PV+ +     V+ +A G +H +AL   G + 
Sbjct: 231 SGGLYSFGK----NDHGQLGLEGGESRFTPVQHRACTSVVEQLACGYYHTVALSRAGEVV 286

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           A+G N+YGQLG G  +   Q   V  L+GL ++ +A G +H+ +L D+G VY +GR  HG
Sbjct: 287 AFGRNDYGQLGLGHRESTWQGGQVPDLAGLRIIQVACGSYHTISLDDEGRVYPFGRNNHG 346

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           +LG G  + + +  P  V  L+   + QV+ G  H++ LT
Sbjct: 347 QLGTGTREDACR--PCFVEGLSQSFVCQVAAGFYHTLCLT 384



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 21/177 (11%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           L+ +G N  G+LG GDT  R  P   Q   G  +V + AG   +  LT+ GEVY  G   
Sbjct: 13  LYGFGQNACGELGLGDTLERHTPTLSQTSRGKDIVGVTAGNELTAVLTNTGEVYSCGYNS 72

Query: 261 HGRLGFGDNDKS-SKMVPQKVNLLAGE---------DIVQVSCGGTHSVALTRDGHIFSF 310
            G+ G G+ D++  +MVP    +   E          +V    G  H V +T +G + + 
Sbjct: 73  EGQCGIGEIDETVPEMVPSLTKVTLREPSFRPAGRVSLVHSGNGSEHLVVVTEEGELQTC 132

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           GR + G+LG+G     G+   +P   P    AG  V +      VAC   HT+ + +
Sbjct: 133 GRNNSGQLGHGE---VGKGYSLP--RPVAGFAGYRVTK------VACSYSHTVVVTD 178


>gi|6630609|dbj|BAA88519.1| cyclin-E binding protein 1 [Homo sapiens]
          Length = 1024

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSVDQGAEHMLILSSDGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  + +  V+CGG+HS  LT+DG +F+FG G 
Sbjct: 214 SWGKNECGQLGLGHTE--SKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V           + V  R     +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLV----------AELVGYR--VTQIACGRWHTLAYV 311



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 41/287 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGAEHMLILSSDGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE GQLG G T+ +  P  ++GL   
Sbjct: 185 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 244 KVEFVACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGYRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           CG  H++A   D G +FSFG G  G+LG G   T  Q M +P+ + +
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGG--TRDQLMPLPVKVSS 346



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 33/262 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVNA-----LSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK    +  S  +      L   KI+Q   G +H LA+   G
Sbjct: 98  KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKIIQITCGDYHSLALSKGG 157

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 158 ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 203

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           + L+  G++++WG+        G  +    P  ++GL  ++V+ +A G  H+  L +DG 
Sbjct: 204 MALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGL 263

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
           L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+ A   D G+V+ +G G
Sbjct: 264 LFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSG 323

Query: 260 EHGRLGFGDNDKSSKMVPQKVN 281
           + G+LG G        +P KV+
Sbjct: 324 KDGQLGNGGTRDQLMPLPVKVS 345



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E ++   +++ L+  KV  V  G  +S  +  DG   
Sbjct: 206 LSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 45/312 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 159 LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 218

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS +  L N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 219 ECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHN 278

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 279 STQNE------LRPCLVAELVGYR--VTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGN 330

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G   Q+  +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 331 GGTRDQLMPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 385

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P   +G     + D+    W ST   +  E++       G   F    ++++M+P 
Sbjct: 386 -RTIPTLNEGTVKRWIADVETKRWQSTK-REIQEIFSSPACLTG--SFLRKRRTTEMMPV 441

Query: 279 KVNLLAGEDIVQ 290
            ++L    +I +
Sbjct: 442 YLDLNKARNIFR 453


>gi|433547476|ref|ZP_20503684.1| hypothetical protein D478_27117 [Brevibacillus agri BAB-2500]
 gi|432181233|gb|ELK38926.1| hypothetical protein D478_27117 [Brevibacillus agri BAB-2500]
          Length = 286

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 118/242 (48%), Gaps = 34/242 (14%)

Query: 42  SVVAGSRNSLAI----------------CDDGKTKTENIPSQVNALSNTKIVQAAIGGWH 85
           S  AGSR+SL +                  DG T  +N+P QV  L+N  + + A G   
Sbjct: 37  SSAAGSRHSLVLKGDGTVWSWGDNAAGQLGDGTTIQQNVPVQVKGLTN--VTRIAAGSSF 94

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            +A+   G  ++WG N +GQ G       +T          P +      V ++AAG  H
Sbjct: 95  SVALKADGTVWSWGDNGFGQLGNGKTSTSNT----------PVQAVGLTDVIEIAAGTNH 144

Query: 146 SVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
            + L ++G VW WG+          + P +V G+  VK IA G+  NLA+++DG +WAWG
Sbjct: 145 GLALKKDGTVWLWGKLLNS----SYNTPFQVGGIADVKEIAAGSNFNLAVKKDGTVWAWG 200

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           NN +GQLG  +      P  +  L+   +V +AAG +   AL  DG+VY WG   +GRLG
Sbjct: 201 NNGFGQLGINNIYDTPSPTKIGTLA--NIVSVAAGEFSGYALDVDGKVYAWGHNGYGRLG 258

Query: 266 FG 267
            G
Sbjct: 259 DG 260



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 18/197 (9%)

Query: 140 AAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           AAG  HS+VL  +G VW+WG         G   Q +VPV+V+GL  V  IA G+  ++AL
Sbjct: 39  AAGSRHSLVLKGDGTVWSWGDNAAGQLGDGTTIQQNVPVQVKGLTNVTRIAAGSSFSVAL 98

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + DG +W+WG+N +GQLG G T   + P+   GL+   +++IAAG  H  AL  DG V+ 
Sbjct: 99  KADGTVWSWGDNGFGQLGNGKTSTSNTPVQAVGLT--DVIEIAAGTNHGLALKKDGTVWL 156

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG+  +          SS   P +V  +A  D+ +++ G   ++A+ +DG ++++G    
Sbjct: 157 WGKLLN----------SSYNTPFQVGGIA--DVKEIAAGSNFNLAVKKDGTVWAWGNNGF 204

Query: 316 GRLGYGRKVTTGQPMEV 332
           G+LG      T  P ++
Sbjct: 205 GQLGINNIYDTPSPTKI 221



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 122/253 (48%), Gaps = 34/253 (13%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V +A G  H L +   G  ++WG N  GQ G+        G  +++++  P +      V
Sbjct: 36  VSSAAGSRHSLVLKGDGTVWSWGDNAAGQLGD--------GTTIQQNV--PVQVKGLTNV 85

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHN 192
            ++AAG + SV L  +G VW+WG         G     + PV+  GL  V  IA G  H 
Sbjct: 86  TRIAAGSSFSVALKADGTVWSWGDNGFGQLGNGKTSTSNTPVQAVGLTDVIEIAAGTNHG 145

Query: 193 LALQEDGALWAWG---NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           LAL++DG +W WG   N+ Y           + P  V G++ +   +IAAG   + A+  
Sbjct: 146 LALKKDGTVWLWGKLLNSSY-----------NTPFQVGGIADVK--EIAAGSNFNLAVKK 192

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           DG V+ WG    G+LG   N+      P K+  LA  +IV V+ G     AL  DG +++
Sbjct: 193 DGTVWAWGNNGFGQLGI--NNIYDTPSPTKIGTLA--NIVSVAAGEFSGYALDVDGKVYA 248

Query: 310 FGRGDHGRLGYGR 322
           +G   +GRLG GR
Sbjct: 249 WGHNGYGRLGDGR 261



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           V   E     A G+ H+L L+ DG +W+WG+N  GQLG G T  ++ P+ V+GL+ +T  
Sbjct: 29  VSAAENAVSSAAGSRHSLVLKGDGTVWSWGDNAAGQLGDGTTIQQNVPVQVKGLTNVT-- 86

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IAAG   S AL  DG V+ WG    G+LG G    S+  V Q V L    D+++++ G 
Sbjct: 87  RIAAGSSFSVALKADGTVWSWGDNGFGQLGNGKTSTSNTPV-QAVGL---TDVIEIAAGT 142

Query: 296 THSVALTRDGHIFSFGR 312
            H +AL +DG ++ +G+
Sbjct: 143 NHGLALKKDGTVWLWGK 159



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 22/163 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           ++ +WG    GQLG G          V+A+    V  + AG+ + LA+  DG        
Sbjct: 103 TVWSWGDNGFGQLGNGKTSTSN--TPVQAVGLTDVIEIAAGTNHGLALKKDGTVWLWGKL 160

Query: 60  --KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
              + N P QV  +++ K  + A G    LAV   G  +AWG N +GQ G          
Sbjct: 161 LNSSYNTPFQVGGIADVK--EIAAGSNFNLAVKKDGTVWAWGNNGFGQLGINN------- 211

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
                D   P +      +  VAAG      L  +G V+ WG 
Sbjct: 212 ---IYDTPSPTKIGTLANIVSVAAGEFSGYALDVDGKVYAWGH 251


>gi|89273844|emb|CAJ81935.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Xenopus (Silurana) tropicalis]
          Length = 526

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 29/256 (11%)

Query: 122 RDIVIPQR---CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPV 174
           + I+ P+R    + K IV      G H V++T +G V++WG         G   Q   P 
Sbjct: 59  QSIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLGNGSTNQALSPC 118

Query: 175 RVQ-GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +V   L   K I+V  G+ H++ L  DG ++AWG N  GQ+G+G T   +QPIP +  S 
Sbjct: 119 QVSTNLINKKAISVACGSHHSMVLTCDGEVYAWGYNNSGQVGSGST--ANQPIPRKVTSC 176

Query: 232 L---TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L   T++ IA G   S A+ D+GEVY WG   +G+LG G +   ++  P ++  L G  +
Sbjct: 177 LQNKTVIGIACGQMSSMAVVDNGEVYAWGYNGNGQLGLGSS--GNQPTPCRIAALQGIRV 234

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            QV CG  H++ALT +G ++++G   +G+LG G K     P++V             VD+
Sbjct: 235 EQVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQVI------------VDK 282

Query: 349 RWIAKLVACGGRHTLA 364
             I ++ AC   HT A
Sbjct: 283 ERIVEIAACHSSHTSA 298



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ LS  +IV  + G G H + V   G  Y+WG N Y Q G        T + L   
Sbjct: 64  PRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLG-----NGSTNQALS-- 116

Query: 124 IVIPQRCAPKLIVRQ---VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRV 176
              P + +  LI ++   VA G  HS+VLT +G V+ WG         G      +P +V
Sbjct: 117 ---PCQVSTNLINKKAISVACGSHHSMVLTCDGEVYAWGYNNSGQVGSGSTANQPIPRKV 173

Query: 177 QGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
               Q K    IA G   ++A+ ++G ++AWG N  GQLG G +  +  P  +  L G+ 
Sbjct: 174 TSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNGNGQLGLGSSGNQPTPCRIAALQGIR 233

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-S 292
           +  +  G  H+ ALTD+G +Y WG   +G+LG G  +KS++  P +V ++  E IV++ +
Sbjct: 234 VEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTG--NKSNQSYPVQV-IVDKERIVEIAA 290

Query: 293 CGGTH-SVALTRDGHIFSFGR 312
           C  +H S A ++ G ++ +G+
Sbjct: 291 CHSSHTSAAKSQSGQVYMWGQ 311



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDG 251
           L L ++  ++  G N  G LGTGD Q   +P  +  LSG  +V ++ G G H   +T DG
Sbjct: 34  LYLTKNDEVFVMGTNSSGCLGTGDAQSIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDG 93

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EVY WG   + +LG G  +++        NL+  +  + V+CG  HS+ LT DG ++++G
Sbjct: 94  EVYSWGHNAYSQLGNGSTNQALSPCQVSTNLI-NKKAISVACGSHHSMVLTCDGEVYAWG 152

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             + G++G G             N P PR     +  + +   +ACG   ++A+V+
Sbjct: 153 YNNSGQVGSGSTA----------NQPIPRKVTSCLQNKTVIG-IACGQMSSMAVVD 197



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V  +  G  +S+A+ D+G+       
Sbjct: 148 VYAWGYNNSGQVGSGSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYN 207

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL   ++ Q   G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 208 GNGQLGLGSSGNQPTPCRIAALQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLG-- 265

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
                 TG    +   +      + IV   A   +H S   ++ G V+ WGQ
Sbjct: 266 ------TGNKSNQSYPVQVIVDKERIVEIAACHSSHTSAAKSQSGQVYMWGQ 311


>gi|383861352|ref|XP_003706150.1| PREDICTED: uncharacterized protein LOC100881287 [Megachile rotundata]
          Length = 1884

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 114/210 (54%), Gaps = 23/210 (10%)

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQP--------------WPPGDIKQISVPVRVQGLEQV 182
            R + AG +H VVL R G+V+TWG                 PP  I    + + V+ L   
Sbjct: 822  RPLCAGFSH-VVLIRNGNVYTWGSSVQGCLGTGPSVLRYGPPQAISFFKI-MEVEVLS-- 877

Query: 183  KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
              ++ G  H LA+  +G ++AWG++ +GQLG G     S P  +  L+   ++D  AG +
Sbjct: 878  --VSCGHCHTLAVTNNG-VYAWGSSRFGQLGLGKILQCSTPELITYLAQEVIIDAVAGQY 934

Query: 243  HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            HS ALT DG V+ WG G HG+LG G+ DK  K+VP  +  L G  I  +S G  H++AL+
Sbjct: 935  HSVALTADGRVFTWGWGVHGQLGHGNTDK--KIVPTLITSLLGTVIRYISAGHAHTLALS 992

Query: 303  RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             +G +++FG    G+LG G  V +  P++V
Sbjct: 993  TEGIVYAFGCNIFGQLGVGSNVKSSVPIKV 1022



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 164/391 (41%), Gaps = 81/391 (20%)

Query: 6    SIIAWGSGEDGQLGIGNNEER----EWVCVVKALEPYKVRSVVAGSRNSLAICDDG---- 57
            ++  WGS   G LG G +  R    + +   K +E  +V SV  G  ++LA+ ++G    
Sbjct: 838  NVYTWGSSVQGCLGTGPSVLRYGPPQAISFFKIME-VEVLSVSCGHCHTLAVTNNGVYAW 896

Query: 58   -----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       K    + P  +  L+   I+ A  G +H +A+   GR + WG   +GQ 
Sbjct: 897  GSSRFGQLGLGKILQCSTPELITYLAQEVIIDAVAGQYHSVALTADGRVFTWGWGVHGQL 956

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGHVWT-----WG 159
            G     K           ++P      L  ++R ++AG  H++ L+ EG V+      +G
Sbjct: 957  GHGNTDKK----------IVPTLITSLLGTVIRYISAGHAHTLALSTEGIVYAFGCNIFG 1006

Query: 160  QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            Q     ++K  SVP++V   E++ LI  G FHNLA+     L+ WG +         TQ 
Sbjct: 1007 QLGVGSNVKS-SVPIKVLLPEKIFLITTGYFHNLAVSYTNKLYVWGASPQVLRLQAQTQK 1065

Query: 220  RS-------------------QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV------Y 254
            R+                   + +P Q  +  T  +++     S A   + +V      Y
Sbjct: 1066 RARILEQRDNIIKQFENIDEFEKVPDQACTNDTSEEVS----ESNAQNKNAQVKQTESSY 1121

Query: 255  GWGRGEH------GRLGFGD-NDKSSKMVPQKVNL-LAGEDIVQVSCGGTHSVALTRDGH 306
               R +         +  G   +  + + P  V+  L   DI+Q+S G  H+  +T+DG 
Sbjct: 1122 SDSRKKQLDNVCLKNVNVGSIEEAQTHLKPTVVDTSLVRGDIIQISAGCHHNALVTKDGS 1181

Query: 307  IFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            ++++GR   G++G G +       EVPI  P
Sbjct: 1182 LYTWGRNLDGQIGNGSR------REVPIPTP 1206



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 95/414 (22%), Positives = 152/414 (36%), Gaps = 91/414 (21%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE--NI 64
            +  WG G  GQLG GN +++    ++ +L    +R + AG  ++LA+  +G       NI
Sbjct: 945  VFTWGWGVHGQLGHGNTDKKIVPTLITSLLGTVIRYISAGHAHTLALSTEGIVYAFGCNI 1004

Query: 65   PSQVNALSNTK------------IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
              Q+   SN K            I     G +H LAV    + Y WG +   Q      +
Sbjct: 1005 FGQLGVGSNVKSSVPIKVLLPEKIFLITTGYFHNLAVSYTNKLYVWGASP--QVLRLQAQ 1062

Query: 113  KDDTGRIL-RRDIVIPQ--------RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
                 RIL +RD +I Q        +   +      +   + S    +   V      + 
Sbjct: 1063 TQKRARILEQRDNIIKQFENIDEFEKVPDQACTNDTSEEVSESNAQNKNAQVKQTESSYS 1122

Query: 164  PGDIKQIS----VPVRVQGLEQVKL------------------IAVGAFHNLALQEDGAL 201
                KQ+       V V  +E+ +                   I+ G  HN  + +DG+L
Sbjct: 1123 DSRKKQLDNVCLKNVNVGSIEEAQTHLKPTVVDTSLVRGDIIQISAGCHHNALVTKDGSL 1182

Query: 202  WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-----DGEVYGW 256
            + WG N  GQ+G G    R  PIP         +       H++   D     DG +   
Sbjct: 1183 YTWGRNLDGQIGNGSR--REVPIPTPLCYNPASIFAQVPPRHNSHRRDEEQELDGGMKNS 1240

Query: 257  GRGEHGRLGFGDNDKSSKMVP-------QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            G  E      G+ +  +K  P       +K+N +     V + CG  ++VA+   G + +
Sbjct: 1241 GNSEKN----GNGNDEAKSSPAESSESREKINPII--KTVGIYCGYDYTVAVQPGGTVLA 1294

Query: 310  FGRGDHGRLG----------------YGRKV-----TTGQPMEVPI---NIPAP 339
            +G     +LG                  ++V     T+   MEVP    NIPAP
Sbjct: 1295 WGNNSRAQLGRLPAKDTRDTDDKLVLIKKRVVRLPHTSHIAMEVPSQVPNIPAP 1348



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 129/335 (38%), Gaps = 81/335 (24%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSV----VAGSRNSLAICDDGK 58
            +   + AWGS   GQLG+G   +    C    L  Y  + V    VAG  +S+A+  DG+
Sbjct: 889  TNNGVYAWGSSRFGQLGLGKILQ----CSTPELITYLAQEVIIDAVAGQYHSVALTADGR 944

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                            T  + +P+ + +L  T I   + G  H LA+  +G  YA+G N 
Sbjct: 945  VFTWGWGVHGQLGHGNTDKKIVPTLITSLLGTVIRYISAGHAHTLALSTEGIVYAFGCNI 1004

Query: 103  YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
            +GQ G         G  ++  + I      K+ +  +  G  H++ ++    ++ WG   
Sbjct: 1005 FGQLG--------VGSNVKSSVPIKVLLPEKIFL--ITTGYFHNLAVSYTNKLYVWGA-- 1052

Query: 163  PPGDIK-QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             P  ++ Q     R + LEQ   I +  F N+   E     A  N+   ++   + Q ++
Sbjct: 1053 SPQVLRLQAQTQKRARILEQRDNI-IKQFENIDEFEKVPDQACTNDTSEEVSESNAQNKN 1111

Query: 222  QPIP-----------------------------VQGLSGLTLVD----------IAAGGW 242
              +                               Q     T+VD          I+AG  
Sbjct: 1112 AQVKQTESSYSDSRKKQLDNVCLKNVNVGSIEEAQTHLKPTVVDTSLVRGDIIQISAGCH 1171

Query: 243  HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            H+  +T DG +Y WGR   G++G G    S + VP
Sbjct: 1172 HNALVTKDGSLYTWGRNLDGQIGNG----SRREVP 1202


>gi|148234239|ref|NP_001080313.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Xenopus laevis]
 gi|28278605|gb|AAH44119.1| Chc1l-prov protein [Xenopus laevis]
          Length = 526

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 29/256 (11%)

Query: 122 RDIVIPQR---CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPV 174
           + I+ P+R    + K IV      G H V++T +G V++WG         G   Q   P 
Sbjct: 59  QSIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLGNGSTNQALSPC 118

Query: 175 RVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +V      ++   +A G+ H++ L  DG ++AWG N  GQ+G+G T   +QPIP +  S 
Sbjct: 119 QVSTNLINKKAHSVACGSHHSMVLTCDGEVYAWGYNNSGQVGSGST--ANQPIPRKVTSC 176

Query: 232 L---TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L   T++ IA G   S A+ D+GEVY WG   +G+LG G +   ++  P ++  L G  +
Sbjct: 177 LQNKTVIGIACGQMSSMAVVDNGEVYAWGYNGNGQLGLGSS--GNQPTPCRIAALQGIRV 234

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
            QV CG  H++ALT +G ++++G   +G+LG G K     P++V             VD+
Sbjct: 235 EQVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQVI------------VDK 282

Query: 349 RWIAKLVACGGRHTLA 364
             I ++ AC   HT A
Sbjct: 283 ERIVEIAACHSSHTSA 298



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ LS  +IV  + G G H + V   G  Y+WG N Y Q G        T + L   
Sbjct: 64  PRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLG-----NGSTNQALS-- 116

Query: 124 IVIPQRCAPKLIVRQ---VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRV 176
              P + +  LI ++   VA G  HS+VLT +G V+ WG         G      +P +V
Sbjct: 117 ---PCQVSTNLINKKAHSVACGSHHSMVLTCDGEVYAWGYNNSGQVGSGSTANQPIPRKV 173

Query: 177 QGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
               Q K    IA G   ++A+ ++G ++AWG N  GQLG G +  +  P  +  L G+ 
Sbjct: 174 TSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNGNGQLGLGSSGNQPTPCRIAALQGIR 233

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-S 292
           +  +  G  H+ ALTD+G +Y WG   +G+LG G  +KS++  P +V ++  E IV++ +
Sbjct: 234 VEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTG--NKSNQSYPVQV-IVDKERIVEIAA 290

Query: 293 CGGTH-SVALTRDGHIFSFGR 312
           C  +H S A ++ G ++ +G+
Sbjct: 291 CHSSHTSAAKSQSGQVYMWGQ 311



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 13/176 (7%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDG 251
           L + ++  ++  G N  G LGTGD Q   +P  +  LSG  +V ++ G G H   +T DG
Sbjct: 34  LYITKNDEVFVMGTNSSGCLGTGDAQSIIEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDG 93

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EVY WG   + +LG G  +++        NL+  +    V+CG  HS+ LT DG ++++G
Sbjct: 94  EVYSWGHNAYSQLGNGSTNQALSPCQVSTNLI-NKKAHSVACGSHHSMVLTCDGEVYAWG 152

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             + G++G G             N P PR     +  + +   +ACG   ++A+V+
Sbjct: 153 YNNSGQVGSGSTA----------NQPIPRKVTSCLQNKTVIG-IACGQMSSMAVVD 197



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V  +  G  +S+A+ D+G+       
Sbjct: 148 VYAWGYNNSGQVGSGSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYN 207

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL   ++ Q   G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 208 GNGQLGLGSSGNQPTPCRIAALQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLG-- 265

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
                 TG    +   +      + IV   A   +H S   ++ G V+ WGQ
Sbjct: 266 ------TGNKSNQSYPVQVIVDKERIVEIAACHSSHTSAAKSQSGQVYMWGQ 311


>gi|145494340|ref|XP_001433164.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124400281|emb|CAK65767.1| unnamed protein product [Paramecium tetraurelia]
          Length = 401

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 173/393 (44%), Gaps = 45/393 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEER---EWVCVVKALEPYKVRSVVAG----------S 47
           + S   + AWG    GQLGIGN+  +   + V +   L      SV A            
Sbjct: 26  VFSQEQLYAWGWNNFGQLGIGNSISQYSPQLVPIQNVLFVACKSSVSAAIDKSGKLYTWG 85

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           R+   +  +G+ +  NIP+ V  L +      A G +H  A+   G+ Y WG  ++G+ G
Sbjct: 86  RSKFGLLGNGQVENINIPTLVECLKHLDFKYVACGNYHMAAITRDGQLYTWGNQDHGKLG 145

Query: 108 EE-------PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
                    P R+    +       +P+       V QV+ G   +++L+ +G+V++ G 
Sbjct: 146 HSFDNLAKLPSREKYEYQKNLGSAKLPELVKLNFKVHQVSLGDQFTLILSDDGNVYSVGL 205

Query: 161 P------WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
                  +   + +++S   ++  L+ +  I  G   ++AL  DG ++AWG+N +GQLGT
Sbjct: 206 NKKGILGYETKNAEELSFK-QISNLKNIIQIDSGTDFSVALDSDGNMFAWGSNYFGQLGT 264

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
                   P  ++GL  +     + G     AL+ DG +Y WG G  G+LG      S +
Sbjct: 265 PSPSVIQTPQQIKGLPKIK--QFSCGEQFIGALSADGVLYTWGFGGDGQLG----TPSKQ 318

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +P    +    +I +VSCG  H V +  +  ++  GRG  G+LG G +  +        
Sbjct: 319 DIPTPHKISFDHNIDKVSCGQAH-VGIISNNKLYMHGRGKEGQLGRGSETESPNSSRY-- 375

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              +P    + V +      +ACGG H+ AIV 
Sbjct: 376 ---SPLLVLENVLK------IACGGSHSFAIVN 399



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 29/202 (14%)

Query: 144 THSVVLTREG-HVWTW---GQPWPPGDIKQIS---VPVRVQGLEQVKLIAVGAFHNLALQ 196
           T S V ++E  + W W   GQ      I Q S   VP+     + V  +A  +  + A+ 
Sbjct: 22  TSSFVFSQEQLYAWGWNNFGQLGIGNSISQYSPQLVPI-----QNVLFVACKSSVSAAID 76

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           + G L+ WG +++G LG G  +  + P  V+ L  L    +A G +H  A+T DG++Y W
Sbjct: 77  KSGKLYTWGRSKFGLLGNGQVENINIPTLVECLKHLDFKYVACGNYHMAAITRDGQLYTW 136

Query: 257 GRGEHGRLGFG-DN--------------DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           G  +HG+LG   DN              +  S  +P+ V L     + QVS G   ++ L
Sbjct: 137 GNQDHGKLGHSFDNLAKLPSREKYEYQKNLGSAKLPELVKL--NFKVHQVSLGDQFTLIL 194

Query: 302 TRDGHIFSFGRGDHGRLGYGRK 323
           + DG+++S G    G LGY  K
Sbjct: 195 SDDGNVYSVGLNKKGILGYETK 216


>gi|449522147|ref|XP_004168089.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like, partial
           [Cucumis sativus]
          Length = 302

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 132/244 (54%), Gaps = 26/244 (10%)

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHV 155
           WG N+ GQ G               D ++PQ+      + ++ VAAG  H+  +T +G +
Sbjct: 1   WGRNQNGQLGLGTTE----------DSLVPQKIQAFEGISIKMVAAGAEHTAAVTEDGEL 50

Query: 156 WTWGQPWPP------GDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNN 207
           + WG  W        GD     VP +V  ++  ++ ++A G  H +++   G L+ +G +
Sbjct: 51  FGWG--WGRYGNLGLGDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWS 108

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           +YGQLG GD + R  P  ++ L G  +  I+ G  H+ ALT DG++YGWG  + G++G G
Sbjct: 109 KYGQLGHGDFEDRLVPHRLEALRGDNISQISGGWRHTMALTTDGKLYGWGWNKFGQVGAG 168

Query: 268 DN-DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           DN D  S   P ++     + ++Q+SCG  H++A+T   ++FS+GRG +G+LG+G  V  
Sbjct: 169 DNIDHCS---PIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNGQLGHGESVDR 225

Query: 327 GQPM 330
             PM
Sbjct: 226 NTPM 229



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 112/201 (55%), Gaps = 16/201 (7%)

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
           VP ++Q  E   +K++A GA H  A+ EDG L+ WG   YG LG GD   R  P  V  +
Sbjct: 19  VPQKIQAFEGISIKMVAAGAEHTAAVTEDGELFGWGWGRYGNLGLGDRNDRLVPQKVSSV 78

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            G  +V +A G  H+ +++  G +Y +G  ++G+LG GD +   ++VP ++  L G++I 
Sbjct: 79  DGDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGHGDFE--DRLVPHRLEALRGDNIS 136

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
           Q+S G  H++ALT DG ++ +G    G++G G  +    P++  I  P         D++
Sbjct: 137 QISGGWRHTMALTTDGKLYGWGWNKFGQVGAGDNIDHCSPIQ--IKFPQ--------DQK 186

Query: 350 WIAKLVACGGRHTLAIVEWQT 370
            I   ++CG RHTLA+ + Q 
Sbjct: 187 VIQ--ISCGWRHTLAVTDKQN 205



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 38/247 (15%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------- 59
           WG  ++GQLG+G  E+      ++A E   ++ V AG+ ++ A+ +DG+           
Sbjct: 1   WGRNQNGQLGLGTTEDSLVPQKIQAFEGISIKMVAAGAEHTAAVTEDGELFGWGWGRYGN 60

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
                     +P +V+++   K+V  A G  H ++V   G  Y +G ++YGQ G      
Sbjct: 61  LGLGDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGHGD--- 117

Query: 114 DDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGHVWTWGQPWP------PG 165
                    D ++P R        + Q++ G  H++ LT +G ++ WG  W        G
Sbjct: 118 -------FEDRLVPHRLEALRGDNISQISGGWRHTMALTTDGKLYGWG--WNKFGQVGAG 168

Query: 166 DIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           D      P++++  +  K+I +  G  H LA+ +   +++WG    GQLG G++  R+ P
Sbjct: 169 DNIDHCSPIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNGQLGHGESVDRNTP 228

Query: 224 IPVQGLS 230
           + ++ LS
Sbjct: 229 MILEALS 235



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 26/171 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTEN--- 63
           +  WG G  G LG+G+  +R     V +++  K+  V  G R+++++   G   T     
Sbjct: 50  LFGWGWGRYGNLGLGDRNDRLVPQKVSSVDGDKMVMVACGWRHTISVSSLGGLYTYGWSK 109

Query: 64  -------------IPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEE 109
                        +P ++ AL    I Q + GGW H +A+   G+ Y WG N++GQ G  
Sbjct: 110 YGQLGHGDFEDRLVPHRLEALRGDNISQIS-GGWRHTMALTTDGKLYGWGWNKFGQVGA- 167

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
               D+        I  PQ    K+I  Q++ G  H++ +T + +V++WG+
Sbjct: 168 ---GDNIDHCSPIQIKFPQD--QKVI--QISCGWRHTLAVTDKQNVFSWGR 211



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           ++S   +  +G  + GQLG G+ E+R     ++AL    +  +  G R+++A+  DGK  
Sbjct: 96  VSSLGGLYTYGWSKYGQLGHGDFEDRLVPHRLEALRGDNISQISGGWRHTMALTTDGKLY 155

Query: 60  -----------KTENI----PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                        +NI    P Q+    + K++Q + G  H LAV D+   ++WG    G
Sbjct: 156 GWGWNKFGQVGAGDNIDHCSPIQIKFPQDQKVIQISCGWRHTLAVTDKQNVFSWGRGTNG 215

Query: 105 QCGEEPERKDDTGRIL 120
           Q G       +T  IL
Sbjct: 216 QLGHGESVDRNTPMIL 231


>gi|383319135|ref|YP_005379976.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320505|gb|AFC99457.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 413

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 169/368 (45%), Gaps = 52/368 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S  S+ AWG+   GQ+G+ N ++   V   + +    V +V  G  +++A+  DG   
Sbjct: 21  VMSDGSVWAWGNNHHGQVGVANAQD---VYTPEKVAVSNVTAVSGGKLHAVALKCDGTVW 77

Query: 58  ----------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                           +T     P +V  LS  + V A  G    LA+ D G  +AWG N
Sbjct: 78  EWGHTNFYEDQSPGYDETLVTFPPVKV-PLSGVRRVSA--GDSFTLALCDNGTVWAWGSN 134

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            YGQ G+   +     R+   + V           + V AG  +S+ L  +G VW WG+ 
Sbjct: 135 YYGQLGDGTNKSSRLVRVKGLENV-----------KDVHAGYGYSMALDEDGRVWEWGRI 183

Query: 162 WPPGDIKQISVPVRVQGLEQVKL-------IAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
           +   +    + P+    L  V++       I+ G F +LAL++DG +WAWG N  GQLG 
Sbjct: 184 YKGHENNTYATPITSNALTPVEVPISNVTAISSGIFFSLALKDDGTVWAWGRNVDGQLGD 243

Query: 215 GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           G T+    P+ V GL    +V I+ G   S AL  DG V+ WG    G  G  D D    
Sbjct: 244 GTTEDSLVPVMVSGLR--DIVAISGGETASMALKKDGSVWAWGD-SIGSFGNVDTDAKEY 300

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVP 333
           + P +V++    ++  +S  G H++AL  D  ++++G+  +G +G  G     G P  V 
Sbjct: 301 LTPIQVSI---SNVTMISFSGLHALALKDDDTLWAWGQNGNGEVGNSGNGSIVGYP--VM 355

Query: 334 INIPAPRN 341
           + IP  +N
Sbjct: 356 VEIPENQN 363



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 136/273 (49%), Gaps = 30/273 (10%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V AA GG+  LAV   G  +AWG N +GQ G              +D+  P++ A    V
Sbjct: 10  VDAAKGGF-SLAVMSDGSVWAWGNNHHGQVGVANA----------QDVYTPEKVAVS-NV 57

Query: 137 RQVAAGGTHSVVLTREGHVWTWG-----QPWPPG-DIKQISVPVRVQGLEQVKLIAVGAF 190
             V+ G  H+V L  +G VW WG     +   PG D   ++ P     L  V+ ++ G  
Sbjct: 58  TAVSGGKLHAVALKCDGTVWEWGHTNFYEDQSPGYDETLVTFPPVKVPLSGVRRVSAGDS 117

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
             LAL ++G +WAWG+N YGQLG G T   S+ + V+GL  +   D+ AG  +S AL +D
Sbjct: 118 FTLALCDNGTVWAWGSNYYGQLGDG-TNKSSRLVRVKGLENVK--DVHAGYGYSMALDED 174

Query: 251 GEVYGWGR--GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           G V+ WGR    H    +     S+ + P +V +    ++  +S G   S+AL  DG ++
Sbjct: 175 GRVWEWGRIYKGHENNTYATPITSNALTPVEVPI---SNVTAISSGIFFSLALKDDGTVW 231

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
           ++GR   G+LG G    T +   VP+ +   R+
Sbjct: 232 AWGRNVDGQLGDG----TTEDSLVPVMVSGLRD 260



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 9/117 (7%)

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+  VD A GG+ S A+  DG V+ WG   HG++G    +      P+KV   A  ++  
Sbjct: 6   GVAGVDAAKGGF-SLAVMSDGSVWAWGNNHHGQVGVA--NAQDVYTPEKV---AVSNVTA 59

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGR---LGYGRKVTTGQPMEVPINIPAPRNAGD 344
           VS G  H+VAL  DG ++ +G  +       GY   + T  P++VP++     +AGD
Sbjct: 60  VSGGKLHAVALKCDGTVWEWGHTNFYEDQSPGYDETLVTFPPVKVPLSGVRRVSAGD 116


>gi|187954501|gb|AAI40717.1| Hect domain and RLD 5 [Homo sapiens]
          Length = 1024

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSVDQGAEHMLILSSDGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  + +  V+CGG+HS  LT+DG +F+FG G 
Sbjct: 214 SWGKNECGQLGLGHTE--SKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V           + V  R     +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLV----------AELVGYR--VTQIACGRWHTLAYV 311



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 41/287 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGAEHMLILSSDGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE GQLG G T+ +  P  ++GL   
Sbjct: 185 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 244 KVEFVACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGYRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           CG  H++A   D G +FSFG G  G+LG G   T  Q M +P+ + +
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGG--TRDQLMPLPVKVSS 346



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 33/262 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVNA-----LSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK    +  S  +      L   KI+Q   G +H LA+   G
Sbjct: 98  KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKIIQITCGDYHSLALSKGG 157

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 158 ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 203

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           + L+  G++++WG+        G  +    P  ++GL  ++V+ +A G  H+  L +DG 
Sbjct: 204 MALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGL 263

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
           L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+ A   D G+V+ +G G
Sbjct: 264 LFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSG 323

Query: 260 EHGRLGFGDNDKSSKMVPQKVN 281
           + G+LG G        +P KV+
Sbjct: 324 KDGQLGNGGTRDQLMPLPVKVS 345



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E ++   +++ L+  KV  V  G  +S  +  DG   
Sbjct: 206 LSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 45/312 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 159 LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 218

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS +  L N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 219 ECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHN 278

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 279 STQNE------LRPCLVAELVGYR--VTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGN 330

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G   Q+  +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 331 GGTRDQLMPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 385

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P   +G     + D+    W ST   +  E++       G   F    ++++M+P 
Sbjct: 386 -RTIPTLNEGTVKRWIADVETKRWQSTK-REIQEIFSSPACLTG--SFLRKRRTTEMMPV 441

Query: 279 KVNLLAGEDIVQ 290
            ++L    +I +
Sbjct: 442 YLDLNKARNIFK 453


>gi|110825982|ref|NP_057407.2| E3 ISG15--protein ligase HERC5 [Homo sapiens]
 gi|296434523|sp|Q9UII4.2|HERC5_HUMAN RecName: Full=E3 ISG15--protein ligase HERC5; AltName:
           Full=Cyclin-E-binding protein 1; AltName: Full=HECT
           domain and RCC1-like domain-containing protein 5
 gi|119626425|gb|EAX06020.1| hect domain and RLD 5 [Homo sapiens]
          Length = 1024

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSVDQGAEHMLILSSDGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  + +  V+CGG+HS  LT+DG +F+FG G 
Sbjct: 214 SWGKNECGQLGLGHTE--SKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V           + V  R     +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLV----------AELVGYR--VTQIACGRWHTLAYV 311



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 41/287 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI     G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSVDQGAEHMLILSSDGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  V L  I+ G  H++AL   G +++WG NE GQLG G T+ +  P  ++GL   
Sbjct: 185 -VEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  V  L G  + Q++
Sbjct: 244 KVEFVACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELVGYRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           CG  H++A   D G +FSFG G  G+LG G   T  Q M +P+ + +
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKDGQLGNGG--TRDQLMPLPVKVSS 346



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 126/262 (48%), Gaps = 33/262 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVNA-----LSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK    +  S  +      L   KI+Q   G +H LA+   G
Sbjct: 98  KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKIIQITCGDYHSLALSKGG 157

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 158 ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 203

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           + L+  G++++WG+        G  +    P  ++GL  ++V+ +A G  H+  L +DG 
Sbjct: 204 MALSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGL 263

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD-GEVYGWGRG 259
           L+ +G  ++GQLG   TQ   +P  V  L G  +  IA G WH+ A   D G+V+ +G G
Sbjct: 264 LFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSG 323

Query: 260 EHGRLGFGDNDKSSKMVPQKVN 281
           + G+LG G        +P KV+
Sbjct: 324 KDGQLGNGGTRDQLMPLPVKVS 345



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E ++   +++ L+  KV  V  G  +S  +  DG   
Sbjct: 206 LSMSGNIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L   ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKD 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 45/312 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 159 LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 218

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS +  L N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 219 ECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHN 278

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE-GHVWTW-----GQPWP 163
             + +       R  ++ +    +  V Q+A G  H++    + G V+++     GQ   
Sbjct: 279 STQNE------LRPCLVAELVGYR--VTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGN 330

Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLAL----QEDGALWAWGNNEYGQLGTGDTQ 218
            G   Q+  +PV+V   E++KL +  +   L +     +   LW    N Y  L      
Sbjct: 331 GGTRDQLMPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKENSYVNLK----- 385

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            R+ P   +G     + D+    W ST   +  E++       G   F    ++++M+P 
Sbjct: 386 -RTIPTLNEGTVKRWIADVETKRWQSTK-REIQEIFSSPACLTG--SFLRKRRTTEMMPV 441

Query: 279 KVNLLAGEDIVQ 290
            ++L    +I +
Sbjct: 442 YLDLNKARNIFK 453


>gi|255569912|ref|XP_002525919.1| Protein pim1, putative [Ricinus communis]
 gi|223534748|gb|EEF36439.1| Protein pim1, putative [Ricinus communis]
          Length = 478

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 150/327 (45%), Gaps = 26/327 (7%)

Query: 57  GKTKTENIPSQVN-------ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-- 107
           GK +   IP Q++       A +N + +  A G  H  AV   G  + WG NE+GQ G  
Sbjct: 38  GKEQELRIPKQLSPELFGCPAGANARWLDIACGREHTAAVASDGSLFTWGANEFGQLGDG 97

Query: 108 -EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
            EE ++     + L  + V    C                 + T    +W WGQ      
Sbjct: 98  TEEGKKYPKKVKQLETEFVKSVSCGAHCTAAIAEPRENDGTISTS--RLWVWGQNQGSNY 155

Query: 167 IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-----PRS 221
            +  S    +  +  +  ++ GA H +AL EDG L AWG NEYGQLG G T      PR 
Sbjct: 156 PRLFSGAFALNTI--ICQVSCGAVHVVALSEDGLLQAWGYNEYGQLGRGITCEGLQGPRV 213

Query: 222 QPIPVQGLSG----LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK-MV 276
                + L      + +  ++ G +H+ A+++ GEVY WG G  G+LG       +K ++
Sbjct: 214 INAYAKFLDEAPELVKITRVSCGEYHTAAISEKGEVYTWGLGSTGQLGHTSLQSGNKELL 273

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P++V  L G  I  V+CGG H+ A+T+ G ++++G    G+LG G +  TG    +P + 
Sbjct: 274 PRRVVALDGILITDVACGGVHTCAVTQKGALYAWGGSQFGQLGLGPQ--TGSFSFIPSDT 331

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTL 363
            +       +      +LVACG  HTL
Sbjct: 332 ESFLRNIPALVFPTGVQLVACGHSHTL 358



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 133/340 (39%), Gaps = 94/340 (27%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----D 56
           +AS  S+  WG+ E GQLG G  E +++   VK LE   V+SV  G+  + AI +    D
Sbjct: 77  VASDGSLFTWGANEFGQLGDGTEEGKKYPKKVKQLETEFVKSVSCGAHCTAAIAEPREND 136

Query: 57  GKTKTE-----------NIP---SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
           G   T            N P   S   AL NT I Q + G  H +A+ + G   AWG NE
Sbjct: 137 GTISTSRLWVWGQNQGSNYPRLFSGAFAL-NTIICQVSCGAVHVVALSEDGLLQAWGYNE 195

Query: 103 YGQCG----------------------EEPERKD-------------------------- 114
           YGQ G                      E PE                             
Sbjct: 196 YGQLGRGITCEGLQGPRVINAYAKFLDEAPELVKITRVSCGEYHTAAISEKGEVYTWGLG 255

Query: 115 DTGRILRRDI------VIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWG------- 159
            TG++    +      ++P+R      +++  VA GG H+  +T++G ++ WG       
Sbjct: 256 STGQLGHTSLQSGNKELLPRRVVALDGILITDVACGGVHTCAVTQKGALYAWGGSQFGQL 315

Query: 160 --------QPWPPGDIKQI--SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
                     + P D +    ++P  V     V+L+A G  H L    DG +  WG N Y
Sbjct: 316 GLGPQTGSFSFIPSDTESFLRNIPALVFP-TGVQLVACGHSHTLICLRDGRIHGWGYNSY 374

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           GQ     T     P PV    G  +  +AAGG HS  LTD
Sbjct: 375 GQAANEKTTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTD 413



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 135/308 (43%), Gaps = 67/308 (21%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV---------RQVAAGGTHS 146
           Y WG N  GQ G + + ++         + IP++ +P+L             +A G  H+
Sbjct: 24  YVWGYNHNGQTGRKGKEQE---------LRIPKQLSPELFGCPAGANARWLDIACGREHT 74

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQE--- 197
             +  +G ++TWG         G  +    P +V+ LE   VK ++ GA    A+ E   
Sbjct: 75  AAVASDGSLFTWGANEFGQLGDGTEEGKKYPKKVKQLETEFVKSVSCGAHCTAAIAEPRE 134

Query: 198 -DGA-----LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIAAGGWHSTALTD 249
            DG      LW WG N+      G   PR       G   L   +  ++ G  H  AL++
Sbjct: 135 NDGTISTSRLWVWGQNQ------GSNYPR----LFSGAFALNTIICQVSCGAVHVVALSE 184

Query: 250 DGEVYGWGRGEHGRLGFGDN----------DKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           DG +  WG  E+G+LG G            +  +K + +   L+    I +VSCG  H+ 
Sbjct: 185 DGLLQAWGYNEYGQLGRGITCEGLQGPRVINAYAKFLDEAPELV---KITRVSCGEYHTA 241

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A++  G ++++G G  G+LG+   + +G    +P  + A     DG+    +   VACGG
Sbjct: 242 AISEKGEVYTWGLGSTGQLGH-TSLQSGNKELLPRRVVAL----DGI----LITDVACGG 292

Query: 360 RHTLAIVE 367
            HT A+ +
Sbjct: 293 VHTCAVTQ 300


>gi|330798916|ref|XP_003287495.1| hypothetical protein DICPUDRAFT_151599 [Dictyostelium purpureum]
 gi|325082514|gb|EGC35994.1| hypothetical protein DICPUDRAFT_151599 [Dictyostelium purpureum]
          Length = 1935

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 149/315 (47%), Gaps = 44/315 (13%)

Query: 71   LSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
            L N K       GW H   + D G  Y WG N+ GQ G         G  + + + +P+R
Sbjct: 1118 LKNEKKAIKVSCGWDHIAVITDDGELYTWGSNQSGQLGH--------GLEVNKTLSLPKR 1169

Query: 130  C---APKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL-- 179
                  K  +  V  GG H++ +     V++WG     Q          S P  ++ L  
Sbjct: 1170 VDFFRGKSPIFMVECGGEHTIAVDSNYFVYSWGSDKFGQLGHGTKAVNQSRPKVIEELTG 1229

Query: 180  EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ------GLS--- 230
            ++++ IA G  HN+ L++ G L+++G  ++GQLGTG    ++ P  ++      GL    
Sbjct: 1230 QKIQAIAAGFAHNIVLKKSGELFSFGYGDFGQLGTGSFHSKNIPTRIEINAIMGGLQHHD 1289

Query: 231  GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            G  +  IA G  HS   +++GEVY WG G+ G+LG    +  SK  P+ +  L G  + +
Sbjct: 1290 GGKITQIACGFGHSVICSENGEVYSWGLGKQGQLGHKVFENISK--PRLIETLRG--VTK 1345

Query: 291  VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
            +SCG  H+VA T   +++S+G G+H +LG+        P  V   I           ++ 
Sbjct: 1346 ISCGHFHTVATTDLKNVYSWGSGEHMKLGHSSDKDESVPKVVDFFI-----------QKN 1394

Query: 351  IAKLVACGGRHTLAI 365
            ++K+V CG  HT+ I
Sbjct: 1395 VSKVV-CGQNHTMTI 1408



 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 58/304 (19%)

Query: 60   KTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
            KT ++P +V+     + I     GG H +AVD     Y+WG +++GQ G   +  + +  
Sbjct: 1162 KTLSLPKRVDFFRGKSPIFMVECGGEHTIAVDSNYFVYSWGSDKFGQLGHGTKAVNQS-- 1219

Query: 119  ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI-------- 170
               R  VI +    K  ++ +AAG  H++VL + G ++++G     GD  Q+        
Sbjct: 1220 ---RPKVIEELTGQK--IQAIAAGFAHNIVLKKSGELFSFGY----GDFGQLGTGSFHSK 1270

Query: 171  SVPVRVQ------GLE-----QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
            ++P R++      GL+     ++  IA G  H++   E+G +++WG  + GQLG    + 
Sbjct: 1271 NIPTRIEINAIMGGLQHHDGGKITQIACGFGHSVICSENGEVYSWGLGKQGQLGHKVFEN 1330

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG-DNDKSSKMVPQ 278
             S+P  ++ L G+T   I+ G +H+ A TD   VY WG GEH +LG   D D+S   VP+
Sbjct: 1331 ISKPRLIETLRGVT--KISCGHFHTVATTDLKNVYSWGSGEHMKLGHSSDKDES---VPK 1385

Query: 279  KVNLLAGEDIVQVSCGGTHSVALT---------------------RDGHIFSFGRGDHGR 317
             V+    +++ +V CG  H++ +T                         I+++G  +HG+
Sbjct: 1386 VVDFFIQKNVSKVVCGQNHTMTITFPDDLNNSNQDDEDEENMNGKSSSPIYAWGSAEHGK 1445

Query: 318  LGYG 321
            LG G
Sbjct: 1446 LGLG 1449



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 137/270 (50%), Gaps = 43/270 (15%)

Query: 120  LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-------KQISV 172
            L+R  + P +   K I  +V+ G  H  V+T +G ++TWG     G +       K +S+
Sbjct: 1110 LKRFPMAPLKNEKKAI--KVSCGWDHIAVITDDGELYTWGSN-QSGQLGHGLEVNKTLSL 1166

Query: 173  PVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQG 228
            P RV   +G   + ++  G  H +A+  +  +++WG++++GQLG G     +S+P  ++ 
Sbjct: 1167 PKRVDFFRGKSPIFMVECGGEHTIAVDSNYFVYSWGSDKFGQLGHGTKAVNQSRPKVIEE 1226

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA---- 284
            L+G  +  IAAG  H+  L   GE++ +G G+ G+LG G     SK +P ++ + A    
Sbjct: 1227 LTGQKIQAIAAGFAHNIVLKKSGELFSFGYGDFGQLGTGSF--HSKNIPTRIEINAIMGG 1284

Query: 285  -----GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
                 G  I Q++CG  HSV  + +G ++S+G G  G+LG+          +V  NI  P
Sbjct: 1285 LQHHDGGKITQIACGFGHSVICSENGEVYSWGLGKQGQLGH----------KVFENISKP 1334

Query: 340  R--NAGDGVDRRWIAKLVACGGRHTLAIVE 367
            R      GV +      ++CG  HT+A  +
Sbjct: 1335 RLIETLRGVTK------ISCGHFHTVATTD 1358



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 84/341 (24%)

Query: 7    IIAWGSGEDGQLGIGN---NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---- 59
            + +WGS + GQLG G    N+ R  V  ++ L   K++++ AG  +++ +   G+     
Sbjct: 1198 VYSWGSDKFGQLGHGTKAVNQSRPKV--IEELTGQKIQAIAAGFAHNIVLKKSGELFSFG 1255

Query: 60   ------------KTENIPS--QVNAL-------SNTKIVQAAIGGWHCLAVDDQGRAYAW 98
                         ++NIP+  ++NA+          KI Q A G  H +   + G  Y+W
Sbjct: 1256 YGDFGQLGTGSFHSKNIPTRIEINAIMGGLQHHDGGKITQIACGFGHSVICSENGEVYSW 1315

Query: 99   GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREG 153
            G  + GQ G +               V      P+LI     V +++ G  H+V  T   
Sbjct: 1316 GLGKQGQLGHK---------------VFENISKPRLIETLRGVTKISCGHFHTVATTDLK 1360

Query: 154  HVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLAL----------QE 197
            +V++WG            K  SVP  V    Q  V  +  G  H + +          Q+
Sbjct: 1361 NVYSWGSGEHMKLGHSSDKDESVPKVVDFFIQKNVSKVVCGQNHTMTITFPDDLNNSNQD 1420

Query: 198  D-----------GALWAWGNNEYGQLGTGDTQPR---SQPIP--VQGLSGLTLVDIAAGG 241
            D             ++AWG+ E+G+LG G         +PIP  ++G++ L L+DI+ G 
Sbjct: 1421 DEDEENMNGKSSSPIYAWGSAEHGKLGLGGDLKSPFFDKPIPTAIKGVNSLNLIDISCGS 1480

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
              S  +T +  +Y WG G  G++G G ND     VP +++L
Sbjct: 1481 DFSAMITSNNAIYVWGCGRFGQIGNGKNDDV--WVPTRISL 1519


>gi|118084892|ref|XP_417063.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Gallus gallus]
          Length = 537

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 22/230 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLAL 195
           G H ++ T +G V+ WG         G   Q   PV+V     L++V  +A G+ H++AL
Sbjct: 90  GPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGVTPVQVCTNLLLKKVIEVACGSHHSMAL 149

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVY 254
             DG L+AWG N  GQ+G+G T  +  P  V   L    +V IA G   S A+ ++GEVY
Sbjct: 150 SFDGDLYAWGYNNCGQVGSGSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVY 209

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
           GWG   +G+LG G+N   +++ P +V  L G  I+Q++CG  H++ALT +G ++++G   
Sbjct: 210 GWGYNGNGQLGLGNN--GNQLTPCRVAALHGVCILQIACGYAHTLALTDEGLLYAWGANT 267

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P+++ +            ++  + ++ AC   HT A
Sbjct: 268 YGQLGTGNKSNQLSPLQIMM------------EKERVVEIAACHSAHTSA 305



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G +++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 63  GDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGV 122

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T   +  ++++ +       V +VA G  HS+ L+ +G ++ WG         G      
Sbjct: 123 TPVQVCTNLLLKK-------VIEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQP 175

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P RV    Q K+   IA G   ++A+  +G ++ WG N  GQLG G+   +  P  V  
Sbjct: 176 TPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA 235

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L G+ ++ IA G  H+ ALTD+G +Y WG   +G+LG G  +KS+++ P ++ ++  E +
Sbjct: 236 LHGVCILQIACGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNQLSPLQI-MMEKERV 292

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C   H S A T+ G ++ +G+
Sbjct: 293 VEIAACHSAHTSAAKTQSGQVYMWGQ 318



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 29/265 (10%)

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDI 167
           D G+     ++ PQ  A    +R+    GT    ++  T    V+ +G         GD 
Sbjct: 9   DVGKWPIFTLLSPQEIAS---IRKACVFGTSANEAIYTTHNDEVFVFGLNCSNCLGTGDS 65

Query: 168 KQISVPVRVQGL--EQVKLIAVGA-FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   VP +++ L  +++  ++ G+  H L   EDG ++AWG+N Y QLG G T     P+
Sbjct: 66  QSTIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGVTPV 125

Query: 225 PV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NL 282
            V   L    ++++A G  HS AL+ DG++Y WG    G++G G    +++  P++V N 
Sbjct: 126 QVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGST--ANQPTPRRVSNC 183

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L  + +V ++CG T S+A+  +G ++ +G   +G+LG G       P  V         A
Sbjct: 184 LQDKMVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQLTPCRVA--------A 235

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
             GV        +ACG  HTLA+ +
Sbjct: 236 LHGV----CILQIACGYAHTLALTD 256



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 45/155 (29%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG   +GQLG+GNN  +   C V AL    +  +  G  ++LA+             
Sbjct: 208 VYGWGYNGNGQLGLGNNGNQLTPCRVAALHGVCILQIACGYAHTLAL------------- 254

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                   D+G  YAWG N YGQ G      + + ++    I++
Sbjct: 255 -----------------------TDEGLLYAWGANTYGQLG----TGNKSNQLSPLQIMM 287

Query: 127 PQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
            +    + +V   A    H S   T+ G V+ WGQ
Sbjct: 288 EK----ERVVEIAACHSAHTSAAKTQSGQVYMWGQ 318


>gi|390479661|ref|XP_002762827.2| PREDICTED: LOW QUALITY PROTEIN: X-linked retinitis pigmentosa
           GTPase regulator, partial [Callithrix jacchus]
          Length = 817

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 150/310 (48%), Gaps = 32/310 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--EEPERKDDTGRILRR 122
           P+ V AL   K+  AA G  H L   + G  YA GGN+ GQ G  +  ER        R 
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNDEGQLGLGDTEERT----TFHRV 133

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
                Q       ++Q++AG   S  LT +G ++ WG     Q   P +I    VP +V 
Sbjct: 134 SFFTSQH-----KIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLP-NILNACVPHQVT 187

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLV 235
             + V  I+ G +H+  +  DG L+ +G +E G+LG  +    +  IP Q +  +   ++
Sbjct: 188 IGKPVSWISCGYYHSAFVTTDGELYIFGESENGKLGLPNELLSNHRIP-QLVPEIPEKVI 246

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            +A GG HS  LT+D  VY +G G+ G+LG G     +   P+ V  +  + I  +SCG 
Sbjct: 247 QVACGGEHSVVLTEDA-VYTFGLGQFGQLGLGTLLFETSE-PKVVENIGNKTISYISCGE 304

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            H+  LT +G +++FG G HG+LG G +  T Q          P    + +  +++ KLV
Sbjct: 305 NHAALLTDNGLMYTFGDGRHGKLGLGLENFTNQ--------FTPTLCCNFL--KFVVKLV 354

Query: 356 ACGGRHTLAI 365
           ACGG H +  
Sbjct: 355 ACGGCHMVVF 364



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 156/331 (47%), Gaps = 40/331 (12%)

Query: 49  NSLAICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           NS A+   GK+K  ENIP +     N   V  + G  H   V    + Y +G N +GQ G
Sbjct: 10  NSGAVFIFGKSKIAENIPGKF-WFKNDVAVHLSCGDEHSAVVTGNNKLYVFGSNNWGQLG 68

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----Q 160
                      +  +  V    C   L    V+  A G  H++V T  G+V+  G     
Sbjct: 69  -----------LGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNDEG 117

Query: 161 PWPPGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD ++ +   RV       ++K ++ G+  + AL EDG L+ WG+N  GQ+G  + 
Sbjct: 118 QLGLGDTEERTTFHRVSFFTSQHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLPNI 177

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +   S+  +P
Sbjct: 178 --LNACVPHQVTIGKPVSWISCGYYHSAFVTTDGELYIFGESENGKLGLPNELLSNHRIP 235

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINI 336
           Q V  +  E ++QV+CGG HSV LT D  +++FG G  G+LG G  +  T +P  V    
Sbjct: 236 QLVPEIP-EKVIQVACGGEHSVVLTEDA-VYTFGLGQFGQLGLGTLLFETSEPKVV---- 289

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  + +  + I+  ++CG  H   + +
Sbjct: 290 -------ENIGNKTIS-YISCGENHAALLTD 312


>gi|366164059|ref|ZP_09463814.1| Ig domain-containing protein [Acetivibrio cellulolyticus CD2]
          Length = 825

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 146/305 (47%), Gaps = 50/305 (16%)

Query: 40  VRSVVAGSRNSLAICDDG-------------KTKTENIPSQVNALSNTKIVQAAIGGWHC 86
           V  V AGS+ +LA+  DG               +  N P ++  L+  K + AA  G HC
Sbjct: 234 VIDVSAGSKYTLALKSDGIVWCWGEINSGSGDKRYINTPVKMEKLTGVKKISAAYDG-HC 292

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHS 146
           LA+   G  + WG +   + G EP   D    I+                  +AA   +S
Sbjct: 293 LAMKSDGTVWTWGIDLSLEIGPEPVLVDGLSNIV-----------------DIAAESYYS 335

Query: 147 VVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGN 206
             L ++G VWTWG+        +  +P +V+G+  V  ++ G  H LAL+ DG +W W  
Sbjct: 336 FALDKDGAVWTWGE-------NKSELPEKVKGISGVIDVSAGQSHVLALKNDGTVWVWKY 388

Query: 207 NEYGQLGTGDTQ--PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           ++   + +G  +    S PI V+ LSG+  +  A GG HS AL DDG VY WG   +   
Sbjct: 389 DDQALVYSGQQEGADLSVPIQVKELSGIVAIS-ARGGGHSIALKDDGSVYIWGSNWY--- 444

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
                D+S+ + P  ++ L+G  + +++ G  H +AL  DG +++FG   +G++G G  +
Sbjct: 445 ----KDESNYLTPVMISELSG--VREIASGNGHLLALKNDGSLWAFGGNGNGQIGDGSFI 498

Query: 325 TTGQP 329
           T  +P
Sbjct: 499 TRKKP 503



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 13/109 (11%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+ A+ +DG V+ WG        +GD +     +P++V  L  +D++ VS G  
Sbjct: 195 ISGGNDHTVAIKEDGTVWAWG-------DYGDRNIP---IPERVPNL--DDVIDVSAGSK 242

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           +++AL  DG ++ +G  + G  G  R + T   ME    +     A DG
Sbjct: 243 YTLALKSDGIVWCWGEINSGS-GDKRYINTPVKMEKLTGVKKISAAYDG 290


>gi|348685793|gb|EGZ25608.1| hypothetical protein PHYSODRAFT_297207 [Phytophthora sojae]
          Length = 529

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 147/327 (44%), Gaps = 49/327 (14%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           KI + A GG H   +   G  Y WG ++ G  G    R  D     + D   P++     
Sbjct: 148 KIARVACGGLHSAVITTAGEVYTWGCSDDGALG----RDGDENTPSKVDGFGPEQAT--- 200

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWG------------QPWPPGDIKQISV-PVRVQGLEQ 181
              Q+  G  H+ V+T  G V+ WG             P      KQ    P  ++ L+ 
Sbjct: 201 -AVQIVGGDCHTAVVTLAGRVYMWGCYRDKEGKQWCDAPSAKAAFKQKQTRPFLIKALDN 259

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRS---------------QP-I 224
           +  +  G   NLA   DG +++WG  E GQLG   D + +                QP +
Sbjct: 260 IADVKCGNAFNLARTNDGRVYSWGLGEMGQLGRKVDAEMKDADGEYKVEMVYKEHLQPKL 319

Query: 225 PVQGLSGLTLV-DIAAGGWHST-ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
            + G   L +V  I  G +HS  AL+ +G +Y  G   +G+LG G  D  S++  Q V  
Sbjct: 320 VMLGKDQLPVVKSIGCGSYHSMFALSSNGYLYTCGLNNYGQLGIGSTDNCSEL--QLVED 377

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP--INIPAPR 340
           L+ +++  V  G  HSV LT DG +++FGR D G+LG     +TG   + P  + IP P+
Sbjct: 378 LSFKNVAFVDGGEHHSVVLTNDGDVYTFGRADSGQLGMLDTCSTGDFKDRPQKVTIPKPK 437

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
           N+G  V R     ++A G  H LA+ E
Sbjct: 438 NSGSNVVR-----MIATGSNHALALTE 459



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 171/390 (43%), Gaps = 74/390 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCV-----VKALEPYKVR--SVVAGSRNSLAI------ 53
           ++ +GSG+ GQLG G   E E + V     V+ L   K++   V  G  +S  I      
Sbjct: 109 LLTFGSGDCGQLGHGVEGEDEDLMVKFPRVVRPLLKLKLKIARVACGGLHSAVITTAGEV 168

Query: 54  ----CDD----GKTKTENIPSQVNAL--SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
               C D    G+   EN PS+V+         VQ   G  H   V   GR Y WG    
Sbjct: 169 YTWGCSDDGALGRDGDENTPSKVDGFGPEQATAVQIVGGDCHTAVVTLAGRVYMWG---- 224

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTW 158
             C  + E K        +     ++  P LI     +  V  G   ++  T +G V++W
Sbjct: 225 --CYRDKEGKQWCDAPSAKAAFKQKQTRPFLIKALDNIADVKCGNAFNLARTNDGRVYSW 282

Query: 159 GQPWPPGDIKQISVPVRVQ-------------------------GLEQ---VKLIAVGAF 190
           G     G++ Q+   V  +                         G +Q   VK I  G++
Sbjct: 283 GL----GEMGQLGRKVDAEMKDADGEYKVEMVYKEHLQPKLVMLGKDQLPVVKSIGCGSY 338

Query: 191 HNL-ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
           H++ AL  +G L+  G N YGQLG G T   S+   V+ LS   +  +  G  HS  LT+
Sbjct: 339 HSMFALSSNGYLYTCGLNNYGQLGIGSTDNCSELQLVEDLSFKNVAFVDGGEHHSVVLTN 398

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSS--KMVPQKVNLL----AGEDIVQ-VSCGGTHSVALT 302
           DG+VY +GR + G+LG  D   +   K  PQKV +     +G ++V+ ++ G  H++ALT
Sbjct: 399 DGDVYTFGRADSGQLGMLDTCSTGDFKDRPQKVTIPKPKNSGSNVVRMIATGSNHALALT 458

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
               IFS+G GD  +LG+G      +P ++
Sbjct: 459 ESDAIFSWGYGDMLQLGHGLDQDENKPRQL 488



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 47/278 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE--EPERKDDTGRILRR 122
           P  + AL N  I     G    LA  + GR Y+WG  E GQ G   + E KD  G   + 
Sbjct: 251 PFLIKALDN--IADVKCGNAFNLARTNDGRVYSWGLGEMGQLGRKVDAEMKDADGE-YKV 307

Query: 123 DIVIPQRCAPKLI---------VRQVAAGGTHSVV-LTREGHVWT-----WGQPWPPGDI 167
           ++V  +   PKL+         V+ +  G  HS+  L+  G+++T     +GQ    G  
Sbjct: 308 EMVYKEHLQPKLVMLGKDQLPVVKSIGCGSYHSMFALSSNGYLYTCGLNNYGQ-LGIGST 366

Query: 168 KQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-------- 217
              S    V+ L  + V  +  G  H++ L  DG ++ +G  + GQLG  DT        
Sbjct: 367 DNCSELQLVEDLSFKNVAFVDGGEHHSVVLTNDGDVYTFGRADSGQLGMLDTCSTGDFKD 426

Query: 218 QPRSQPIPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +P+   IP    SG  +V  IA G  H+ ALT+   ++ WG G+  +LG G +   +K  
Sbjct: 427 RPQKVTIPKPKNSGSNVVRMIATGSNHALALTESDAIFSWGYGDMLQLGHGLDQDENK-- 484

Query: 277 PQKVN-------------LLAGEDIVQVSCGGTHSVAL 301
           P+++N                  +I+Q+  GG HS  L
Sbjct: 485 PRQLNWSNATYGKEGKNKKFGEAEILQIEAGGQHSAVL 522


>gi|115373014|ref|ZP_01460317.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821893|ref|YP_003954251.1| regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
 gi|115369926|gb|EAU68858.1| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394965|gb|ADO72424.1| Regulator of chromosome condensation [Stigmatella aurantiaca
           DW4/3-1]
          Length = 864

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 170/366 (46%), Gaps = 55/366 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + ST +++AWG    GQLG G+ + R     V  L    ++++ AG   SLA+  DGK  
Sbjct: 78  LRSTGAVLAWGQNNSGQLGDGSTQNRTLPVNVLGLP--SIKAISAGGSYSLAVGADGKVW 135

Query: 59  -------------------TKTENIPSQVNALSNTKIV----QAAIGGW--HCLAVDDQG 93
                              + +E    QV  +S   IV     AA+ G   H LA+   G
Sbjct: 136 AWGANNSGQLGTGYLGNGKSGSEYADFQVTPVS---IVIPGGAAAVSGGLNHSLALAKDG 192

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           + +AWG N YGQ G+         R+    + IP           +AAG  HS+ + R+G
Sbjct: 193 KLWAWGANTYGQLGDGTTAN----RLAPVSVNIPGG------AIAIAAGWYHSLAIARDG 242

Query: 154 HVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            VW WG     Q    G   Q++ PV V        +A G  H+L +  +G +W+WG N 
Sbjct: 243 RVWAWGRNNSGQVGNGGTANQLT-PVVVAFPGSAIAVAGGGSHSLVVLSNGTVWSWGANN 301

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            GQLG G    R  PI V G+   T V  AAGG+ S A+T DG V+ WG+   G+LG G 
Sbjct: 302 AGQLGDGSNATRVSPIQVPGIGVATKV--AAGGYFSLAITSDG-VWSWGQNTRGQLGNGS 358

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
              SS  VP  V + A  + + +S G  HS+ L     I+++G   +G+LG G  V    
Sbjct: 359 LANSS--VP--VFITATSNALALSGGYHHSLILRPGCPIWAWGFNAYGQLGDGTLVDRLA 414

Query: 329 PMEVPI 334
           P++  I
Sbjct: 415 PVQAEI 420



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 157/322 (48%), Gaps = 47/322 (14%)

Query: 62  ENIPSQVNALSNTKIVQA-AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
           E+  ++++ALS +   Q  + G +H L +   G   AWG N  GQ G+   +     R L
Sbjct: 50  ESSLTEISALSLSNTQQGVSAGSYHSLLLRSTGAVLAWGQNNSGQLGDGSTQN----RTL 105

Query: 121 RRDIV-IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-------GDIKQIS- 171
             +++ +P        ++ ++AGG++S+ +  +G VW WG            G+ K  S 
Sbjct: 106 PVNVLGLPS-------IKAISAGGSYSLAVGADGKVWAWGANNSGQLGTGYLGNGKSGSE 158

Query: 172 ------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                  PV +        ++ G  H+LAL +DG LWAWG N YGQLG G T  R  P+ 
Sbjct: 159 YADFQVTPVSIVIPGGAAAVSGGLNHSLALAKDGKLWAWGANTYGQLGDGTTANRLAPVS 218

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V    G   + IAAG +HS A+  DG V+ WGR   G++G G    ++++ P  V     
Sbjct: 219 VNIPGG--AIAIAAGWYHSLAIARDGRVWAWGRNNSGQVGNG--GTANQLTPVVVAFPG- 273

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
              + V+ GG+HS+ +  +G ++S+G  + G+LG G   T   P++VP         G G
Sbjct: 274 -SAIAVAGGGSHSLVVLSNGTVWSWGANNAGQLGDGSNATRVSPIQVP---------GIG 323

Query: 346 VDRRWIAKLVACGGRHTLAIVE 367
           V     A  VA GG  +LAI  
Sbjct: 324 V-----ATKVAAGGYFSLAITS 340


>gi|326914182|ref|XP_003203406.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like [Meleagris
           gallopavo]
          Length = 537

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 22/230 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLAL 195
           G H ++ T +G V+ WG         G   Q   PV+V     L++V  +A G+ H++AL
Sbjct: 90  GPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGVTPVQVCTNLLLKKVIEVACGSHHSMAL 149

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVY 254
             DG L+AWG N  GQ+G+G T  +  P  V   L    +V IA G   S A+ ++GEVY
Sbjct: 150 SFDGDLYAWGYNNCGQVGSGSTANQPTPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVY 209

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
           GWG   +G+LG G+N   +++ P +V  L G  I+Q++CG  H++ALT +G ++++G   
Sbjct: 210 GWGYNGNGQLGLGNN--GNQLTPCRVAALHGVCILQIACGYAHTLALTDEGLLYAWGANT 267

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P+++ +            ++  + ++ AC   HT A
Sbjct: 268 YGQLGTGNKSNQLSPLQIMM------------EKERVVEIAACHSAHTSA 305



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 136/266 (51%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G +++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 63  GDSQSTIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGV 122

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T   +  ++++ +       V +VA G  HS+ L+ +G ++ WG         G      
Sbjct: 123 TPVQVCTNLLLKK-------VIEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGSTANQP 175

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P RV    Q K+   IA G   ++A+  +G ++ WG N  GQLG G+   +  P  V  
Sbjct: 176 TPRRVSNCLQDKMVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA 235

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L G+ ++ IA G  H+ ALTD+G +Y WG   +G+LG G  +KS+++ P ++ ++  E +
Sbjct: 236 LHGVCILQIACGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNQLSPLQI-MMEKERV 292

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C   H S A T+ G ++ +G+
Sbjct: 293 VEIAACHSAHTSAAKTQSGQVYMWGQ 318



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 29/265 (10%)

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDI 167
           D G+     ++ PQ  A    +R+    GT    ++  T    V+ +G         GD 
Sbjct: 9   DVGKWPIFTLLSPQEIAS---IRKACVFGTSANEAIYTTHNDEVFVFGLNCSNCLGTGDS 65

Query: 168 KQISVPVRVQGL--EQVKLIAVGA-FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   VP +++ L  +++  ++ G+  H L   EDG ++AWG+N Y QLG G T     P+
Sbjct: 66  QSTIVPKKLEALCGKKISSLSYGSGPHVLLCTEDGEVYAWGHNGYSQLGNGATNQGVTPV 125

Query: 225 PV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NL 282
            V   L    ++++A G  HS AL+ DG++Y WG    G++G G    +++  P++V N 
Sbjct: 126 QVCTNLLLKKVIEVACGSHHSMALSFDGDLYAWGYNNCGQVGSGST--ANQPTPRRVSNC 183

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L  + +V ++CG T S+A+  +G ++ +G   +G+LG G       P  V         A
Sbjct: 184 LQDKMVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQLTPCRVA--------A 235

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
             GV        +ACG  HTLA+ +
Sbjct: 236 LHGV----CILQIACGYAHTLALTD 256



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 45/155 (29%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG   +GQLG+GNN  +   C V AL    +  +  G  ++LA+             
Sbjct: 208 VYGWGYNGNGQLGLGNNGNQLTPCRVAALHGVCILQIACGYAHTLAL------------- 254

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                   D+G  YAWG N YGQ G      + + ++    I++
Sbjct: 255 -----------------------TDEGLLYAWGANTYGQLG----TGNKSNQLSPLQIMM 287

Query: 127 PQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
            +    + +V   A    H S   T+ G V+ WGQ
Sbjct: 288 EK----ERVVEIAACHSAHTSAAKTQSGQVYMWGQ 318


>gi|168024283|ref|XP_001764666.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684244|gb|EDQ70648.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 401

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 183/412 (44%), Gaps = 70/412 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+G+ G+LG  + E      V K+++  +  ++  G  ++L + ++G+     +  
Sbjct: 11  VALWGNGDYGRLGQASGESFWEPTVCKSMQHLQPIALACGGAHTLVLTEEGRVYASGLND 70

Query: 67  -----------------QVNALSN-TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                            +V  L +  K    A G +H  A+ + GR Y WG N  GQ G 
Sbjct: 71  WGQLGLPLSTGHSMEFLEVEGLPDEAKFTHIAAGDFHSAAISEDGRVYMWGRNTQGQLGL 130

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
               K   G++     V          ++ +A G  HS+ L+ EG V +WG         
Sbjct: 131 GKRGK---GKVCAAQWV---ESLKDFRIQALALGAEHSLALSEEGEVLSWGTSLNGRLGH 184

Query: 165 GDIKQIS------------VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYG 210
           G+  + S             P  V+G   VK+  +A G  H+  L E G+L+ +G     
Sbjct: 185 GEGHRSSSMFSIFRKSSEYTPRLVKGFRDVKVSKVAAGLTHSACLDEQGSLFTFGKGREC 244

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G  +  S+P  V  +    + +IA GG+H+ A++ +G++Y WG  E+G LGFG   
Sbjct: 245 QLGLGGDRDISEPKRVPVIP--PVEEIACGGYHTGAISRNGQLYMWGSNEYGCLGFGYKH 302

Query: 271 KSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFG----RGDH--------GR 317
           +++  +P  V   L    + QV CG  H++ALT DG +F++G    +G H        G+
Sbjct: 303 QNATSLPMLVEGALESLRVTQVQCGWKHTMALTVDGDVFAWGWGGSQGTHGVDGLSSGGQ 362

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
           LG G +    +P +V               +   A  ++CG  H+ AI+E Q
Sbjct: 363 LGLGNENDFLEPTQVK-------------SKNMKAIQISCGFNHSGAILEEQ 401


>gi|198477465|ref|XP_002136602.1| GA29094 [Drosophila pseudoobscura pseudoobscura]
 gi|198142893|gb|EDY71606.1| GA29094 [Drosophila pseudoobscura pseudoobscura]
          Length = 243

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 130/244 (53%), Gaps = 18/244 (7%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERK-DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
           +A+ + G+  + G N+ GQ G   +    +  +ILR   ++ +R    ++V Q+A G  H
Sbjct: 1   MALTEWGQILSCGDNDCGQVGHFTDNDVIELSKILR--FLVSKR---LVVVVQIACGNNH 55

Query: 146 SVVLTREGHVWTWGQPW-------PPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQ 196
           S+ LT  G +++WG           P D+   + PV++  +    L  IA G  H+  + 
Sbjct: 56  SLALTSCGELYSWGYNIYGQLGVQSPKDLPHFNAPVQLTTILGTSLATIACGGNHSFLIS 115

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           +  A++ WG N  GQLG  D Q R+ P  ++ +  L +  +  G  +S  LT++G V+  
Sbjct: 116 KSSAVFGWGKNTCGQLGLNDEQSRAYPSQLKTMRTLGVRFVPCGDEYSVFLTNEGGVFTC 175

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGRGDH 315
           G G +G+LG G +   ++M+P+ V  L G  I QV+CG  H++AL R  G ++SFG G  
Sbjct: 176 GAGNYGQLGHGVS--YNEMIPRMVMELMGSTITQVACGNRHTLALVRSGGRVYSFGLGAS 233

Query: 316 GRLG 319
           G+LG
Sbjct: 234 GQLG 237



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 108/212 (50%), Gaps = 20/212 (9%)

Query: 162 WPPGDIKQISVPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT---G 215
           +   D+ ++S  +R    + L  V  IA G  H+LAL   G L++WG N YGQLG     
Sbjct: 23  FTDNDVIELSKILRFLVSKRLVVVVQIACGNNHSLALTSCGELYSWGYNIYGQLGVQSPK 82

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           D    + P+ +  + G +L  IA GG HS  ++    V+GWG+   G+LG   ND+ S+ 
Sbjct: 83  DLPHFNAPVQLTTILGTSLATIACGGNHSFLISKSSAVFGWGKNTCGQLGL--NDEQSRA 140

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            P ++  +    +  V CG  +SV LT +G +F+ G G++G+LG+G          V  N
Sbjct: 141 YPSQLKTMRTLGVRFVPCGDEYSVFLTNEGGVFTCGAGNYGQLGHG----------VSYN 190

Query: 336 IPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
              PR   + +        VACG RHTLA+V 
Sbjct: 191 EMIPRMVMELMGSTITQ--VACGNRHTLALVR 220



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 26/204 (12%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +VQ A G  H LA+   G  Y+WG N YGQ G +  +             +P   AP  +
Sbjct: 46  VVQIACGNNHSLALTSCGELYSWGYNIYGQLGVQSPKD------------LPHFNAPVQL 93

Query: 136 -------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ--V 182
                  +  +A GG HS ++++   V+ WG+         D +  + P +++ +    V
Sbjct: 94  TTILGTSLATIACGGNHSFLISKSSAVFGWGKNTCGQLGLNDEQSRAYPSQLKTMRTLGV 153

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
           + +  G  +++ L  +G ++  G   YGQLG G +     P  V  L G T+  +A G  
Sbjct: 154 RFVPCGDEYSVFLTNEGGVFTCGAGNYGQLGHGVSYNEMIPRMVMELMGSTITQVACGNR 213

Query: 243 HSTALTDD-GEVYGWGRGEHGRLG 265
           H+ AL    G VY +G G  G+LG
Sbjct: 214 HTLALVRSGGRVYSFGLGASGQLG 237



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 46/245 (18%)

Query: 7   IIAWGSGEDGQLG-IGNNEEREWVCVVKALEPYKVRSVV---AGSRNSLAICDDGKTKT- 61
           I++ G  + GQ+G   +N+  E   +++ L   ++  VV    G+ +SLA+   G+  + 
Sbjct: 9   ILSCGDNDCGQVGHFTDNDVIELSKILRFLVSKRLVVVVQIACGNNHSLALTSCGELYSW 68

Query: 62  ------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                              N P Q+  +  T +   A GG H   +      + WG N  
Sbjct: 69  GYNIYGQLGVQSPKDLPHFNAPVQLTTILGTSLATIACGGNHSFLISKSSAVFGWGKNTC 128

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQ G   E+         R      +    L VR V  G  +SV LT EG V+T G    
Sbjct: 129 GQLGLNDEQS--------RAYPSQLKTMRTLGVRFVPCGDEYSVFLTNEGGVFTCG---- 176

Query: 164 PGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQL 212
            G+  Q+         +P  V  L    +  +A G  H LAL +  G ++++G    GQL
Sbjct: 177 AGNYGQLGHGVSYNEMIPRMVMELMGSTITQVACGNRHTLALVRSGGRVYSFGLGASGQL 236

Query: 213 GTGDT 217
           G  +T
Sbjct: 237 GIRNT 241



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ ++++  WG    GQLG+ + + R +   +K +    VR V  G   S+ + ++G   
Sbjct: 114 ISKSSAVFGWGKNTCGQLGLNDEQSRAYPSQLKTMRTLGVRFVPCGDEYSVFLTNEGGVF 173

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
           T                E IP  V  L  + I Q A G  H LA V   GR Y++G    
Sbjct: 174 TCGAGNYGQLGHGVSYNEMIPRMVMELMGSTITQVACGNRHTLALVRSGGRVYSFGLGAS 233

Query: 104 GQCG 107
           GQ G
Sbjct: 234 GQLG 237


>gi|74213730|dbj|BAC39029.2| unnamed protein product [Mus musculus]
          Length = 1203

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 180/394 (45%), Gaps = 59/394 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAIC 54
           ++ T  +  WGS    QL  G  E        K L+P         +++ AG   +  I 
Sbjct: 368 VSETCEVYVWGSNSSHQLVEGTQE--------KILQPKLAPSFSDAQTIEAGQYCTFVIS 419

Query: 55  DDGKTKT-------------ENIPSQVNALS-----NTKIVQAAIGG-WHCLAVDDQGRA 95
            DG  +               N  S +  L+     + K V ++ G   H LA   +G  
Sbjct: 420 TDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEV 479

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           ++WG  +YG+ G          ++++  +          +V  V+AG  HS  +T +G +
Sbjct: 480 FSWGDGDYGKLGHGNSSTQKYPKLIQGPL-------QGKVVVCVSAGYRHSAAVTEDGEL 532

Query: 156 WTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYG 210
           +TWG+        GD    ++P  V+ +  V  ++ G+ H +AL +DG  +W++G  + G
Sbjct: 533 YTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNG 592

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           +LG GDT    +P  ++ L G+ +  + AG   S ALT  G+VY WG G    LG G ++
Sbjct: 593 KLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE 650

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
            ++ + P+ +  LA   IV +S G +H ++L+ D  ++++G    G+ G G   +TG   
Sbjct: 651 -ATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGN--STG--- 704

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             PI  P   +  DG+  + I+     G  H+LA
Sbjct: 705 --PITKPKKVSGLDGIAIQQISA----GTSHSLA 732



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 471 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDG 530

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 531 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 588

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  ++        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 589 GDNGKLGH-----GDTNRVYKPKVI---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H L+L  D  ++AWGNN  GQ G G
Sbjct: 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG 700

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 701 NSTGPITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK--- 58
           S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S    LA   +G+   
Sbjct: 423 SVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFS 481

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
                        + T+  P  +      K+V     G+ H  AV + G  Y WG  ++G
Sbjct: 482 WGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFG 541

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ--- 160
           + G      D   R       IP        V +V+ G +H++ L+++G  VW++G    
Sbjct: 542 RLG----HGDSNSR------NIPTLVKDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDN 591

Query: 161 -PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                GD  ++  P  ++ L+   ++ +  G+  +LAL   G ++AWG      LG G +
Sbjct: 592 GKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSS 649

Query: 218 QPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           +  + +P  ++ L+   +VDI+ G  H  +L+ D EVY WG    G+ G G N       
Sbjct: 650 EATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQG-NSTGPITK 708

Query: 277 PQKVNLLAGEDIVQVSCGGTHSV---ALTRDGHIFSFGR 312
           P+KV+ L G  I Q+S G +HS+   AL RD  + ++ R
Sbjct: 709 PKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHR 747


>gi|255081710|ref|XP_002508077.1| E3 ubiquitin-protein ligase [Micromonas sp. RCC299]
 gi|226523353|gb|ACO69335.1| E3 ubiquitin-protein ligase [Micromonas sp. RCC299]
          Length = 1348

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 152/333 (45%), Gaps = 48/333 (14%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKT------------------ENI--PSQVNAL 71
           V +L+   V  V  G+R+S+A+   G+                     E +  P +V A 
Sbjct: 202 VSSLDGRDVTHVAGGARHSVAVTSAGEVYAFGDCSGEGKALSAPTRLREAVIDPPEVTAT 261

Query: 72  SNT--KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER----KDDTGRILRRDIV 125
           +N   ++   A G  HC AV   G   +WG  E+GQ G+ P R    K D   ++RR   
Sbjct: 262 TNAMPRVATVACGQRHCAAVTTSGVLLSWGNEEFGQLGQGPPRDSSSKGDAKSLIRRRA- 320

Query: 126 IPQRCAPKLI------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVR 175
                 P+L+         VA G  H++ LT  G V+++G+        GD     VP  
Sbjct: 321 -DASMMPRLVGSGHVKFTSVACGAGHTLALTANGRVFSFGRGAFGALGHGDRLNCDVPRL 379

Query: 176 VQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL--SG 231
           V  L    V  IA G  H+ +L   G ++ WG  +YG LG  D   RS+P PVQ L  +G
Sbjct: 380 VDALWGVGVAQIAAGDNHSASLSASGRVYTWGRGKYGALGHRDVDNRSRPTPVQALDDAG 439

Query: 232 LTLVDIAAGGWHSTALTDDGE--VYGWGRGEHGRLGFGDNDKSSKMVPQKVN--LLAGED 287
           +    IA GG H+ A+   G   +  WGRG  G  G G    +  + P  ++  LL  E 
Sbjct: 440 VRCEQIACGGDHTLAIAGGGSGVLLAWGRGSSGPAGTGAT--ADVLTPTIIDRALLGDEK 497

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           + Q+S G  HSVA+T  G ++++G    G+LG+
Sbjct: 498 VFQISAGSKHSVAVTEGGCVYTWGARTQGQLGH 530



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 122/260 (46%), Gaps = 44/260 (16%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ--------------GLEQ 181
           V  VA G  HSV +T  G V+ +G     G+ K +S P R++               + +
Sbjct: 210 VTHVAGGARHSVAVTSAGEVYAFGDC--SGEGKALSAPTRLREAVIDPPEVTATTNAMPR 267

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL------------ 229
           V  +A G  H  A+   G L +WGN E+GQLG G  +  S     + L            
Sbjct: 268 VATVACGQRHCAAVTTSGVLLSWGNEEFGQLGQGPPRDSSSKGDAKSLIRRRADASMMPR 327

Query: 230 ---SG-LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
              SG +    +A G  H+ ALT +G V+ +GRG  G LG GD       VP+ V+ L G
Sbjct: 328 LVGSGHVKFTSVACGAGHTLALTANGRVFSFGRGAFGALGHGDRLNCD--VPRLVDALWG 385

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             + Q++ G  HS +L+  G ++++GRG +G LG+ R V          + P P  A D 
Sbjct: 386 VGVAQIAAGDNHSASLSASGRVYTWGRGKYGALGH-RDVDNR-------SRPTPVQALDD 437

Query: 346 VDRRWIAKLVACGGRHTLAI 365
              R   + +ACGG HTLAI
Sbjct: 438 AGVR--CEQIACGGDHTLAI 455



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 145/336 (43%), Gaps = 54/336 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  V++L    +   A G  H +AV   G  YA     +G C  E +      R+    I
Sbjct: 199 PRSVSSLDGRDVTHVAGGARHSVAVTSAGEVYA-----FGDCSGEGKALSAPTRLREAVI 253

Query: 125 VIPQRCA-----PKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-------PP------GD 166
             P+  A     P+  V  VA G  H   +T  G + +WG          PP      GD
Sbjct: 254 DPPEVTATTNAMPR--VATVACGQRHCAAVTTSGVLLSWGNEEFGQLGQGPPRDSSSKGD 311

Query: 167 IKQI-------SVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
            K +       S+  R+ G   VK   +A GA H LAL  +G ++++G   +G LG GD 
Sbjct: 312 AKSLIRRRADASMMPRLVGSGHVKFTSVACGAGHTLALTANGRVFSFGRGAFGALGHGDR 371

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
                P  V  L G+ +  IAAG  HS +L+  G VY WGRG++G LG  D D  S+  P
Sbjct: 372 LNCDVPRLVDALWGVGVAQIAAGDNHSASLSASGRVYTWGRGKYGALGHRDVDNRSRPTP 431

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGH--IFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            +    AG    Q++CGG H++A+   G   + ++GRG  G  G G       P      
Sbjct: 432 VQALDDAGVRCEQIACGGDHTLAIAGGGSGVLLAWGRGSSGPAGTGATADVLTPTI---- 487

Query: 336 IPAPRNAGDGVDRRWIAK----LVACGGRHTLAIVE 367
                     +DR  +       ++ G +H++A+ E
Sbjct: 488 ----------IDRALLGDEKVFQISAGSKHSVAVTE 513



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 138/349 (39%), Gaps = 72/349 (20%)

Query: 2   ASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           A TTS  +++WG+ E GQLG G   +       K+L    +R                + 
Sbjct: 280 AVTTSGVLLSWGNEEFGQLGQGPPRDSSSKGDAKSL----IRR---------------RA 320

Query: 60  KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
               +P  V +  + K    A G  H LA+   GR +++G   +G  G         G  
Sbjct: 321 DASMMPRLVGS-GHVKFTSVACGAGHTLALTANGRVFSFGRGAFGALGH--------GDR 371

Query: 120 LRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
           L  D+       P+L+       V Q+AAG  HS  L+  G V+TWG+         D+ 
Sbjct: 372 LNCDV-------PRLVDALWGVGVAQIAAGDNHSASLSASGRVYTWGRGKYGALGHRDVD 424

Query: 169 QISVPVRVQGLE----QVKLIAVGAFHNLALQE--DGALWAWGNNEYGQLGTGDTQPRSQ 222
             S P  VQ L+    + + IA G  H LA+     G L AWG    G  GTG T     
Sbjct: 425 NRSRPTPVQALDDAGVRCEQIACGGDHTLAIAGGGSGVLLAWGRGSSGPAGTGATADVLT 484

Query: 223 PIPVQG--LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG--FGDNDKSSKMV-- 276
           P  +    L    +  I+AG  HS A+T+ G VY WG    G+LG   GD   S   V  
Sbjct: 485 PTIIDRALLGDEKVFQISAGSKHSVAVTEGGCVYTWGARTQGQLGHELGDAGTSEHGVWK 544

Query: 277 ------------PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
                        +   L AG D++     G H+ A    G   +  RG
Sbjct: 545 LSTGGGAAVSAVAKVAGLPAGRDVLYAVAAGDHTFAAVAPGKGAATTRG 593



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 22/131 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR--SVVAGSRNSLAICD--- 55
           ++++  +  WG G+ G LG  + + R     V+AL+   VR   +  G  ++LAI     
Sbjct: 401 LSASGRVYTWGRGKYGALGHRDVDNRSRPTPVQALDDAGVRCEQIACGGDHTLAIAGGGS 460

Query: 56  ---------------DGKTKTENIPSQVN--ALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
                           G T     P+ ++   L + K+ Q + G  H +AV + G  Y W
Sbjct: 461 GVLLAWGRGSSGPAGTGATADVLTPTIIDRALLGDEKVFQISAGSKHSVAVTEGGCVYTW 520

Query: 99  GGNEYGQCGEE 109
           G    GQ G E
Sbjct: 521 GARTQGQLGHE 531


>gi|167518173|ref|XP_001743427.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778526|gb|EDQ92141.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1024

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 144/297 (48%), Gaps = 31/297 (10%)

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
           AA G +H L V   G  Y+ G N++ Q G    R    G I +R   I         +RQ
Sbjct: 37  AAAGAYHSLLVTTDGLVYSAGKNDHRQLG----RSGPAG-IFKRIEAIEVAS-----IRQ 86

Query: 139 VAAGGTHSVVLTREGHVWTWG--QPWPPGDIKQIS-----VPVRVQGLEQVKLIA--VGA 189
           VAAG   S++L   G V+  G  +    G  +Q S     VP  ++ L  V ++A  VG 
Sbjct: 87  VAAGEDFSLMLDDRGKVYAVGAGERGQLGCGRQTSEEGHRVPKIIRSLHDVPIVALSVGG 146

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            H LAL     ++AWG N  GQLG G   P  QP P+  L+G  +V +AAG  HS ALT 
Sbjct: 147 RHALALSASSIVFAWGENANGQLGNGHFVPSYQPTPIPELNGRGVVGLAAGRQHSLALTA 206

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
             E+Y +G  EHG+LG GD     ++ P+ V     + +V+VS G  HS+A +  GH F+
Sbjct: 207 ASELYAFGANEHGQLGVGDT--KPRLRPELVRAALRKGLVKVSAGDFHSLARSATGHAFA 264

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +G    G+ G G        + +P  I + +  G   D       +A G RH++ +V
Sbjct: 265 WGGNQWGQCGVGDD---ADAILLPREIDSVQEHGHIAD-------IATGKRHSVLLV 311



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 112/279 (40%), Gaps = 49/279 (17%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT-- 61
           TT  + + +G++    +G +        ++A+E   +R V AG   SL + D GK     
Sbjct: 48  TTDGLVYSAGKNDHRQLGRSGPAGIFKRIEAIEVASIRQVAAGEDFSLMLDDRGKVYAVG 107

Query: 62  -----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                              +P  + +L +  IV  ++GG H LA+      +AWG N  G
Sbjct: 108 AGERGQLGCGRQTSEEGHRVPKIIRSLHDVPIVALSVGGRHALALSASSIVFAWGENANG 167

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ- 160
           Q G         G  +      P    P+L  R V   AAG  HS+ LT    ++ +G  
Sbjct: 168 QLG--------NGHFVPSYQPTP---IPELNGRGVVGLAAGRQHSLALTAASELYAFGAN 216

Query: 161 ---PWPPGDIKQISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTG 215
                  GD K    P  V+   +  L+ V A  FH+LA    G  +AWG N++GQ G G
Sbjct: 217 EHGQLGVGDTKPRLRPELVRAALRKGLVKVSAGDFHSLARSATGHAFAWGGNQWGQCGVG 276

Query: 216 D-----TQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALT 248
           D       PR    +   G     + DIA G  HS  L 
Sbjct: 277 DDADAILLPREIDSVQEHG----HIADIATGKRHSVLLV 311



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 94/217 (43%), Gaps = 28/217 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           +++++ + AWG   +GQLG G+         +  L    V  + AG ++SLA+       
Sbjct: 152 LSASSIVFAWGENANGQLGNGHFVPSYQPTPIPELNGRGVVGLAAGRQHSLALTAASELY 211

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       G TK    P  V A     +V+ + G +H LA    G A+AWGGN++G
Sbjct: 212 AFGANEHGQLGVGDTKPRLRPELVRAALRKGLVKVSAGDFHSLARSATGHAFAWGGNQWG 271

Query: 105 QCGEEPERKDDTGRILR-RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           QCG      DD   IL  R+I   Q       +  +A G  HSV+L    +  T   P P
Sbjct: 272 QCGV----GDDADAILLPREIDSVQEHGH---IADIATGKRHSVLLVVTSNQTT---PTP 321

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
               KQ+        L Q+  +A G  H+L L E+ A
Sbjct: 322 STFHKQLLFTFGANSLAQLG-VAAGGDHSLVLYEERA 357


>gi|403263471|ref|XP_003924055.1| PREDICTED: E3 ISG15--protein ligase HERC5 [Saimiri boliviensis
           boliviensis]
          Length = 1024

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 20/232 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  +  G  H ++L+  G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 99  IHSMDLGADHMLILSSGGKPFEYDN----YSMKHLRFESILQE-KKIIQITCGDYHSLAL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ LSG+ L  I+AG  HS AL+  G +Y
Sbjct: 154 SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLSGIPLAQISAGEAHSMALSMSGNIY 213

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG    +  SK  P  +  L  + +  ++CGG+H+  LT+DG +F+FG G 
Sbjct: 214 SWGKNEFGQLGLDHTE--SKDSPSLIEALDNQKVEFLACGGSHTALLTQDGLLFTFGAGK 271

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           HG+LG+       +P  V         AG+ V +      +ACG  HTLA V
Sbjct: 272 HGQLGHNSTQNELRPCLVA------ELAGNRVTQ------IACGRWHTLAYV 311



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 139/286 (48%), Gaps = 41/286 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  +    N KI    +G  H L +   G+ +              E  + + + LR + 
Sbjct: 88  PKCIKLGKNMKIHSMDLGADHMLILSSGGKPF--------------EYDNYSMKHLRFES 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----------PWPPGDIKQISVPV 174
           ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ           +P     QI    
Sbjct: 134 ILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQI---- 184

Query: 175 RVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            V+ L  + L  I+ G  H++AL   G +++WG NE+GQLG   T+ +  P  ++ L   
Sbjct: 185 -VEHLSGIPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQ 243

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +  +A GG H+  LT DG ++ +G G+HG+L  G N   +++ P  V  LAG  + Q++
Sbjct: 244 KVEFLACGGSHTALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCLVAELAGNRVTQIA 301

Query: 293 CGGTHSVALTRD-GHIFSFGRGDHGRLGYG--RKVTTGQPMEVPIN 335
           CG  H++A   D G +FSFG G  G+LG G  R      PM+V  N
Sbjct: 302 CGRWHTLAYVSDLGKVFSFGSGKEGQLGNGGTRDQLIPLPMKVSSN 347



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           RQ+         L R G      Q  P  D  +    +++    ++  + +GA H L L 
Sbjct: 54  RQICCSSGRLAFLERGGAGVQVHQLLPGSDGLRTPKCIKLGKNMKIHSMDLGADHMLILS 113

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
             G  + + N     L       R + I    L    ++ I  G +HS AL+  GE++ W
Sbjct: 114 SGGKPFEYDNYSMKHL-------RFESI----LQEKKIIQITCGDYHSLALSKGGELFAW 162

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G+  HG+LG G    S+   PQ V  L+G  + Q+S G  HS+AL+  G+I+S+G+ + G
Sbjct: 163 GQNLHGQLGVGRKFPSTT-TPQIVEHLSGIPLAQISAGEAHSMALSMSGNIYSWGKNEFG 221

Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +LG     +   P  +           + +D + + + +ACGG HT  + +
Sbjct: 222 QLGLDHTESKDSPSLI-----------EALDNQKV-EFLACGGSHTALLTQ 260



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 36/219 (16%)

Query: 35  LEPYKVRSVVAGSRNSLAICDDG-----------------KTKTENIPSQVNALSNTKIV 77
           L+  K+  +  G  +SLA+   G                 K  +   P  V  LS   + 
Sbjct: 135 LQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLSGIPLA 194

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-EEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           Q + G  H +A+   G  Y+WG NE+GQ G +  E KD    I   D    Q+      V
Sbjct: 195 QISAGEAHSMALSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALD---NQK------V 245

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVKLIAVGA 189
             +A GG+H+ +LT++G ++T+G     G +   S      P  V  L   +V  IA G 
Sbjct: 246 EFLACGGSHTALLTQDGLLFTFGAG-KHGQLGHNSTQNELRPCLVAELAGNRVTQIACGR 304

Query: 190 FHNLALQED-GALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           +H LA   D G ++++G+ + GQLG G T+ +  P+P++
Sbjct: 305 WHTLAYVSDLGKVFSFGSGKEGQLGNGGTRDQLIPLPMK 343



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+ + E ++   +++AL+  KV  +  G  ++  +  DG   
Sbjct: 206 LSMSGNIYSWGKNEFGQLGLDHTESKDSPSLIEALDNQKVEFLACGGSHTALLTQDGLLF 265

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 266 TFGAGKHGQLGHNSTQNELRPCLVAELAGNRVTQIACGRWHTLAYVSDLGKVFSFGSGKE 325

Query: 104 GQCG 107
           GQ G
Sbjct: 326 GQLG 329


>gi|356524449|ref|XP_003530841.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 444

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 172/379 (45%), Gaps = 67/379 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKAL-----------EPYKVRSVVAGSRNSLAI-- 53
           +++WG G  GQLG G  E R +   V  L            P + R + +  + +L +  
Sbjct: 47  VLSWGKGASGQLGGGVEETRLYPSPVANLAVPKSSFALSQTPGRRRLLPSPPKRALEVGL 106

Query: 54  -C-------------------DDGKTKT--EN---IPSQVNALSNTKIVQAAIGGWHCLA 88
            C                   D G+     EN   +P+    L N  ++  A+GG H +A
Sbjct: 107 SCGLFHSSLIVDGALWIWGKGDGGRLGFGHENPLFVPTLNPHLDN--LLSVALGGLHSVA 164

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           +   G  + WG   +G  G     ++   R+++           +  ++ +A  GTH+  
Sbjct: 165 LTSDGEVFTWGYGGFGALGHSVYHRELFPRLVKGSW--------EGTIKHIATSGTHTAA 216

Query: 149 LTREGHVWTWGQPWPPGDIKQ-------------ISVPVRVQGLEQ-VKLIAVGAFHNLA 194
           +T  G ++ WG+    GD +              +S+P +V+ L   +  ++ G F  +A
Sbjct: 217 ITESGELYIWGRD--EGDGRLGLGPGRGPDHAGGLSIPSKVKELPYPIAAVSCGGFFTMA 274

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  DG LW WG N   +LG GD     +P PV  L  + ++ +A+GG+HS ALTDDG+V 
Sbjct: 275 LTVDGQLWNWGANSNYELGRGDKIGGWKPRPVPSLENVKIIQLASGGYHSLALTDDGKVL 334

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG G   +   G     ++ +P  V  LA E+I+ +SCGG+ S A+T +G ++ +G  +
Sbjct: 335 SWGHGG--QGQLGHGSIQNQKIPAVVEALAHENIIYISCGGSSSAAVTDNGKLYMWGNAN 392

Query: 315 HGRLGY-GRKVTTGQPMEV 332
             +LG  G       P+EV
Sbjct: 393 DSQLGIPGLPPVQSCPVEV 411



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 113/238 (47%), Gaps = 23/238 (9%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           ++ G  HS ++  +G +W WG+        G    + VP     L+ +  +A+G  H++A
Sbjct: 106 LSCGLFHSSLIV-DGALWIWGKGDGGRLGFGHENPLFVPTLNPHLDNLLSVALGGLHSVA 164

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L  DG ++ WG   +G LG         P  V+G    T+  IA  G H+ A+T+ GE+Y
Sbjct: 165 LTSDGEVFTWGYGGFGALGHSVYHRELFPRLVKGSWEGTIKHIATSGTHTAAITESGELY 224

Query: 255 GWGRGE-----HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            WGR E         G G +      +P KV  L    I  VSCGG  ++ALT DG +++
Sbjct: 225 IWGRDEGDGRLGLGPGRGPDHAGGLSIPSKVKELP-YPIAAVSCGGFFTMALTVDGQLWN 283

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G   +  LG G K+   +P  VP            ++   I +L A GG H+LA+ +
Sbjct: 284 WGANSNYELGRGDKIGGWKPRPVP-----------SLENVKIIQL-ASGGYHSLALTD 329



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 38/193 (19%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKT------------KTENI----PSQVNALSNTK 75
           VK L PY + +V  G   ++A+  DG+             + + I    P  V +L N K
Sbjct: 255 VKEL-PYPIAAVSCGGFFTMALTVDGQLWNWGANSNYELGRGDKIGGWKPRPVPSLENVK 313

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           I+Q A GG+H LA+ D G+  +WG    GQ G    +      ++       +  A + I
Sbjct: 314 IIQLASGGYHSLALTDDGKVLSWGHGGQGQLGHGSIQNQKIPAVV-------EALAHENI 366

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL--------EQV 182
           +  ++ GG+ S  +T  G ++ WG     Q   PG     S PV V  L         +V
Sbjct: 367 I-YISCGGSSSAAVTDNGKLYMWGNANDSQLGIPGLPPVQSCPVEVNFLMEDDGLGPHKV 425

Query: 183 KLIAVGAFHNLAL 195
             +A+GA H + L
Sbjct: 426 LSVAIGASHAMCL 438


>gi|444910461|ref|ZP_21230646.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
 gi|444719398|gb|ELW60195.1| BNR repeat domain protein [Cystobacter fuscus DSM 2262]
          Length = 196

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 10/199 (5%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           ++AG  HS+ +  +G VW WG  +      G       PV+V GL  V  ++ G  H+LA
Sbjct: 4   LSAGCYHSLAVRTDGTVWAWGYNYDGRLGDGTTTPRLTPVQVPGLTDVVALSAGDSHSLA 63

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L+ DG +WAWG+N YGQLG G T  R  P+ V  L+   +V ++AG +HS AL  DG V+
Sbjct: 64  LRTDGTVWAWGSNTYGQLGDGTTTFRRSPVQVPSLT--DVVALSAGRYHSLALRTDGTVW 121

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG   +G+LG+G +  +S + P  V+ L G   + V  G  HS+AL  DG + ++G   
Sbjct: 122 AWGPNNYGQLGYGTD--TSGLFPVLVSNLTGTSNLYV--GAEHSLALRTDGTVRAWGDNY 177

Query: 315 HGRLGYGRKVTTGQPMEVP 333
           +G+LG G       P++VP
Sbjct: 178 YGQLGDGTSALFLHPVQVP 196



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 96/196 (48%), Gaps = 16/196 (8%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  + G +H LAV   G  +AWG N  G+ G+        G    R  + P +      
Sbjct: 1   MVALSAGCYHSLAVRTDGTVWAWGYNYDGRLGD--------GTTTPR--LTPVQVPGLTD 50

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFH 191
           V  ++AG +HS+ L  +G VW WG         G       PV+V  L  V  ++ G +H
Sbjct: 51  VVALSAGDSHSLALRTDGTVWAWGSNTYGQLGDGTTTFRRSPVQVPSLTDVVALSAGRYH 110

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +LAL+ DG +WAWG N YGQLG G       P+ V  L+G +  ++  G  HS AL  DG
Sbjct: 111 SLALRTDGTVWAWGPNNYGQLGYGTDTSGLFPVLVSNLTGTS--NLYVGAEHSLALRTDG 168

Query: 252 EVYGWGRGEHGRLGFG 267
            V  WG   +G+LG G
Sbjct: 169 TVRAWGDNYYGQLGDG 184



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 4/100 (4%)

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +V ++AG +HS A+  DG V+ WG    GRL  GD   + ++ P +V  L   D+V +S 
Sbjct: 1   MVALSAGCYHSLAVRTDGTVWAWGYNYDGRL--GDGTTTPRLTPVQVPGL--TDVVALSA 56

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           G +HS+AL  DG ++++G   +G+LG G       P++VP
Sbjct: 57  GDSHSLALRTDGTVWAWGSNTYGQLGDGTTTFRRSPVQVP 96



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 69/170 (40%), Gaps = 30/170 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG   DG+LG G    R     V  L    V ++ AG  +SLA+            
Sbjct: 19  TVWAWGYNYDGRLGDGTTTPRLTPVQVPGLT--DVVALSAGDSHSLALRTDGTVWAWGSN 76

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T     P QV +L  T +V  + G +H LA+   G  +AWG N YGQ G  
Sbjct: 77  TYGQLGDGTTTFRRSPVQVPSL--TDVVALSAGRYHSLALRTDGTVWAWGPNNYGQLGYG 134

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
               D +G       + P   +       +  G  HS+ L  +G V  WG
Sbjct: 135 ---TDTSG-------LFPVLVSNLTGTSNLYVGAEHSLALRTDGTVRAWG 174



 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 20/119 (16%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWGS   GQLG G    R     V +L    V ++ AG  +SLA+  DG        
Sbjct: 69  TVWAWGSNTYGQLGDGTTTFRRSPVQVPSLT--DVVALSAGRYHSLALRTDGTVWAWGPN 126

Query: 59  --------TKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   T T  + P  V+ L+ T  +   +G  H LA+   G   AWG N YGQ G+
Sbjct: 127 NYGQLGYGTDTSGLFPVLVSNLTGTSNLY--VGAEHSLALRTDGTVRAWGDNYYGQLGD 183


>gi|428171675|gb|EKX40590.1| hypothetical protein GUITHDRAFT_75473, partial [Guillardia theta
           CCMP2712]
          Length = 413

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 171/399 (42%), Gaps = 69/399 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + A G    G+LG     E+  + +V++L   ++  V AGS  S  + ++GK        
Sbjct: 42  VFACGQNRKGELGHSTFREQVEMSLVQSLRRKRIVKVAAGSETSYFLTEEGKVYCCGLNS 101

Query: 60  --------------KTENIPSQVNALS----NTKIVQAAI--GGWHCLAVDDQGRAYAWG 99
                         +++   S +  +     + K+VQ +   G  H L V   G+ Y+ G
Sbjct: 102 TGQLARETHQGSANRSKEYSSDIELMEGLPPDCKVVQVSCFNGAEHVLVVTSAGQVYSCG 161

Query: 100 GNEYGQCGEEPERKDDTGRI---LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
            N +GQ G    +   +  +   L+   V+   C+             HSVV++ +G  +
Sbjct: 162 CNNHGQLGLGSTKMSPSLLLVESLKHVRVLSASCSYH-----------HSVVVSSDGSAF 210

Query: 157 TWGQPWPPGDIKQISVPVRVQGL----------EQVKLIAVGAFHNLALQEDGALWAWGN 206
           ++G      D  Q+ +  R   L            V+L A G +H + L E+G +++ G 
Sbjct: 211 SFGL----NDCGQLGIGTRPNQLLPHRVELPSPHLVRLAACGQYHTIFLTEEGMVFSCGK 266

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
           N  GQLG G     + P  +  L       IA G  H+  + +DG+++ +G    G+LG 
Sbjct: 267 NLNGQLGLGSRSSTNVPTLIAALQERPASMIACGYSHTCVVLEDGKLFTFGYNHQGQLGL 326

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           G  D  S   P +V  L    +V++SCG   +  L+  G ++SFG   HG+LG G     
Sbjct: 327 GHTDSVSS--PMQVETLRNVKVVKISCGTHFTCVLSESGELWSFGCNCHGQLGLGDSTDR 384

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             P+ VP            + ++ +++ +ACG  H +AI
Sbjct: 385 LVPVLVP-----------SMTKKNLSE-IACGFHHLVAI 411



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 130/254 (51%), Gaps = 20/254 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--EEPERKD 114
           G TK       V +L + +++ A+    H + V   G A+++G N+ GQ G    P +  
Sbjct: 171 GSTKMSPSLLLVESLKHVRVLSASCSYHHSVVVSSDGSAFSFGLNDCGQLGIGTRPNQ-- 228

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
               +L   + +P   +P L VR  A G  H++ LT EG V++ G+        G     
Sbjct: 229 ----LLPHRVELP---SPHL-VRLAACGQYHTIFLTEEGMVFSCGKNLNGQLGLGSRSST 280

Query: 171 SVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           +VP  +  L++    +IA G  H   + EDG L+ +G N  GQLG G T   S P+ V+ 
Sbjct: 281 NVPTLIAALQERPASMIACGYSHTCVVLEDGKLFTFGYNHQGQLGLGHTDSVSSPMQVET 340

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L  + +V I+ G   +  L++ GE++ +G   HG+LG GD+  + ++VP  V  +  +++
Sbjct: 341 LRNVKVVKISCGTHFTCVLSESGELWSFGCNCHGQLGLGDS--TDRLVPVLVPSMTKKNL 398

Query: 289 VQVSCGGTHSVALT 302
            +++CG  H VA++
Sbjct: 399 SEIACGFHHLVAIS 412



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 132/289 (45%), Gaps = 39/289 (13%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           +A G N  G+ G    R+       + ++ + Q    K IV+ VAAG   S  LT EG V
Sbjct: 43  FACGQNRKGELGHSTFRE-------QVEMSLVQSLRRKRIVK-VAAGSETSYFLTEEGKV 94

Query: 156 WTWG-----------QPWPPGDIKQISVPVRV-QGLE-QVKLIAVGAF----HNLALQED 198
           +  G                   K+ S  + + +GL    K++ V  F    H L +   
Sbjct: 95  YCCGLNSTGQLARETHQGSANRSKEYSSDIELMEGLPPDCKVVQVSCFNGAEHVLVVTSA 154

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G +++ G N +GQLG G T+     + V+ L  + ++  +    HS  ++ DG  + +G 
Sbjct: 155 GQVYSCGCNNHGQLGLGSTKMSPSLLLVESLKHVRVLSASCSYHHSVVVSSDGSAFSFGL 214

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            + G+LG G   + ++++P +V L +   +   +CG  H++ LT +G +FS G+  +G+L
Sbjct: 215 NDCGQLGIG--TRPNQLLPHRVELPSPHLVRLAACGQYHTIFLTEEGMVFSCGKNLNGQL 272

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G G + +T  P  +      P            A ++ACG  HT  ++E
Sbjct: 273 GLGSRSSTNVPTLIAALQERP------------ASMIACGYSHTCVVLE 309



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           D  ++A G N  G+LG    + + +   VQ L    +V +AAG   S  LT++G+VY  G
Sbjct: 39  DCGVFACGQNRKGELGHSTFREQVEMSLVQSLRRKRIVKVAAGSETSYFLTEEGKVYCCG 98

Query: 258 RGEHGRLGFGDNDKS---SKMVPQKVNLLAGE----DIVQVSC--GGTHSVALTRDGHIF 308
               G+L    +  S   SK     + L+ G      +VQVSC  G  H + +T  G ++
Sbjct: 99  LNSTGQLARETHQGSANRSKEYSSDIELMEGLPPDCKVVQVSCFNGAEHVLVVTSAGQVY 158

Query: 309 SFGRGDHGRLGYG 321
           S G  +HG+LG G
Sbjct: 159 SCGCNNHGQLGLG 171


>gi|52345808|ref|NP_001004950.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 2 [Xenopus (Silurana) tropicalis]
 gi|49522414|gb|AAH75441.1| MGC89218 protein [Xenopus (Silurana) tropicalis]
          Length = 526

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 26/242 (10%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQ-GLEQVKLIAV 187
           K IV      G H V++T +G V++WG         G   Q   P +V   L   K I+V
Sbjct: 73  KRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLGNGSTNQALSPCQVSTNLINKKAISV 132

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---TLVDIAAGGW 242
             G+ H++ L  DG ++AWG N  GQ+G+G T   +QPIP +  S L   T++ IA G  
Sbjct: 133 ACGSHHSMVLTCDGEVYAWGYNNSGQVGSGST--ANQPIPRKVTSCLQNKTVIGIACGQM 190

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            S A+ D+GEVY WG   +G+LG G +   ++  P ++  L G  + QV CG  H++ALT
Sbjct: 191 SSMAVVDNGEVYAWGYNGNGQLGLGSS--GNQPTPCRIAALQGIRVEQVVCGYAHTLALT 248

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            +G ++++G   +G+LG G K     P++V             VD+  I ++ AC   HT
Sbjct: 249 DEGVMYAWGANSYGQLGTGNKSNQSYPVQVI------------VDKERIVEIAACHSSHT 296

Query: 363 LA 364
            A
Sbjct: 297 SA 298



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ LS  +IV  + G G H + V   G  Y+WG N Y Q G        T + L   
Sbjct: 64  PRRIDMLSGKRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQLG-----NGSTNQALS-- 116

Query: 124 IVIPQRCAPKLIVRQ---VAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRV 176
              P + +  LI ++   VA G  HS+VLT +G V+ WG         G      +P +V
Sbjct: 117 ---PCQVSTNLINKKAISVACGSHHSMVLTCDGEVYAWGYNNSGQVGSGSTANQPIPRKV 173

Query: 177 QGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
               Q K    IA G   ++A+ ++G ++AWG N  GQLG G +  +  P  +  L G+ 
Sbjct: 174 TSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNGNGQLGLGSSGNQPTPCRIAALQGIR 233

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-S 292
           +  +  G  H+ ALTD+G +Y WG   +G+LG G  +KS++  P +V ++  E IV++ +
Sbjct: 234 VEQVVCGYAHTLALTDEGVMYAWGANSYGQLGTG--NKSNQSYPVQV-IVDKERIVEIAA 290

Query: 293 CGGTH-SVALTRDGHIFSFGR 312
           C  +H S A ++ G ++ +G+
Sbjct: 291 CHSSHTSAAKSQSGQVYMWGQ 311



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDG 251
           L L ++  ++  G N  G LGTGD Q   +P  +  LSG  +V ++ G G H   +T DG
Sbjct: 34  LYLTKNDEVFVMGTNSSGCLGTGDAQSILEPRRIDMLSGKRIVSLSYGSGPHVVIVTSDG 93

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EVY WG   + +LG G  +++        NL+  +  + V+CG  HS+ LT DG ++++G
Sbjct: 94  EVYSWGHNAYSQLGNGSTNQALSPCQVSTNLI-NKKAISVACGSHHSMVLTCDGEVYAWG 152

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             + G++G G             N P PR     +  + +   +ACG   ++A+V+
Sbjct: 153 YNNSGQVGSGSTA----------NQPIPRKVTSCLQNKTVIG-IACGQMSSMAVVD 197



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V  +  G  +S+A+ D+G+       
Sbjct: 148 VYAWGYNNSGQVGSGSTANQPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYN 207

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL   ++ Q   G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 208 GNGQLGLGSSGNQPTPCRIAALQGIRVEQVVCGYAHTLALTDEGVMYAWGANSYGQLG-- 265

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
                 TG    +   +      + IV   A   +H S   ++ G V+ WGQ
Sbjct: 266 ------TGNKSNQSYPVQVIVDKERIVEIAACHSSHTSAAKSQSGQVYMWGQ 311


>gi|39104479|dbj|BAC65474.3| mKIAA0032 protein [Mus musculus]
          Length = 938

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 110/208 (52%), Gaps = 33/208 (15%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 15  VAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRV 74

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAG 285
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  
Sbjct: 75  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRT 131

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +V +SCG  H+  LT+ G +F+FG G  G+LG+                    +  D 
Sbjct: 132 QKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SVNDE 172

Query: 346 VDRRWIAKL-------VACGGRHTLAIV 366
           V+ R + +L       +ACG +HTLA+V
Sbjct: 173 VNPRRVLELMGSEVTQIACGRQHTLALV 200



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 13/227 (5%)

Query: 117 GRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIK 168
           G +   D V   R   KL    + QV+ G  H + L  +G  +TWG     Q     +  
Sbjct: 7   GLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFP 66

Query: 169 QISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
             + P RV+ LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V
Sbjct: 67  SQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHV 126

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L    +V I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P++V  L G 
Sbjct: 127 KLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSVNDEVNPRRVLELMGS 184

Query: 287 DIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           ++ Q++CG  H++AL    G I++FG G  G+LG G       P  V
Sbjct: 185 EVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPV 231



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E    T       
Sbjct: 17  VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTS------ 70

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D K    P  V+
Sbjct: 71  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK 127

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G    GQLG         P  V  L G  + 
Sbjct: 128 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSVNDEVNPRRVLELMGSEVT 187

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ AL    G +Y +G G  G+LG G
Sbjct: 188 QIACGRQHTLALVPSSGLIYAFGCGAKGQLGTG 220



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 14/159 (8%)

Query: 210 GQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G 
Sbjct: 4   GQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG- 62

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
            +  S+  PQ+V  L G  + QV+ GG HS AL+  G +F +G  + G+LG    ++  +
Sbjct: 63  KEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG----LSDEK 118

Query: 329 PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             E P ++   R              ++CG  HT  + +
Sbjct: 119 DRESPCHVKLLRTQK--------VVYISCGEEHTAVLTK 149



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 108/245 (44%), Gaps = 41/245 (16%)

Query: 13  GEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKTKT---------- 61
           G DGQLG+   E+   V  +++ L    +  V  G+ + LA+  DG+  T          
Sbjct: 1   GSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLG 60

Query: 62  --ENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
             +  PSQ     V +L    + Q A GG H  A+   G  + WG N  GQ G   E+  
Sbjct: 61  LGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDR 120

Query: 115 DTG---RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
           ++    ++LR   V+   C           G  H+ VLT+ G V+T+G     G +   S
Sbjct: 121 ESPCHVKLLRTQKVVYISC-----------GEEHTAVLTKSGGVFTFG-AGSCGQLGHDS 168

Query: 172 V-----PVRVQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           V     P RV  L   +V  IA G  H LAL    G ++A+G    GQLGTG T     P
Sbjct: 169 VNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCP 228

Query: 224 IPVQG 228
            PV+G
Sbjct: 229 SPVKG 233



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 100 AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 159

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 160 SCGQLGHDSVNDEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLG 218


>gi|350419254|ref|XP_003492121.1| PREDICTED: secretion-regulating guanine nucleotide exchange
           factor-like [Bombus impatiens]
          Length = 727

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 180/396 (45%), Gaps = 57/396 (14%)

Query: 6   SIIAWGSGEDGQLGIG-NNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDGKTK 60
           S+++WG+   GQLG G  +EE    C V     +LEP K++ +V G+ ++L + D G+  
Sbjct: 4   SLMSWGANSHGQLGQGIESEECVLPCEVDLSKCSLEPKKIKKIVGGAGHTLILDDSGRVY 63

Query: 61  T--------------ENIPS--QVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEY 103
           +              ++I S  ++N     K++     GW C  A+  +G    WG N +
Sbjct: 64  SCGWNNKGQVGFPTKDSILSFRELNEKLKNKVIVDIACGWDCSAALTIEGTLLLWGSNRF 123

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           GQ G+ P     T          P        ++ ++ G  H+V+LT +  +   G    
Sbjct: 124 GQLGKHPNSLQWTHE--------PFEVVTGRKIKGISMGLRHTVLLTEDCKILVAGTGSK 175

Query: 161 -------PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                      G +        V  L  ++ ++ G +H +A+ +DG ++A+G+N+YGQLG
Sbjct: 176 GQLGLSFSNSKGSLNAAYSFTEVLTLSDIESVSCGQYHTIAVAKDGNIYAFGDNKYGQLG 235

Query: 214 TG-DTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
              D  P++  PI +  +     +++ +G W    + +D  ++GWGR  +G+LG    +K
Sbjct: 236 LNTDACPKTFIPIKLSDVQFKLPINMYSG-WSHVIVLNDNNIFGWGRNTYGQLGIIKLEK 294

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            S     ++  L    + +VS G  H+VALT +G I  +G  +HG  G G      + ++
Sbjct: 295 PSIWKATRIENLP--KVHRVSAGSEHNVALTENGEILCWGWNEHGNCGNGHT----KDVK 348

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            P  +  P N        +   L+  G  H+ A+++
Sbjct: 349 FPEQLVLPYN--------YTGILIGSGAAHSFAVIK 376


>gi|345857538|ref|ZP_08809972.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
 gi|344329366|gb|EGW40710.1| cell wall binding repeat 2 family protein [Desulfosporosinus sp.
           OT]
          Length = 732

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 154/338 (45%), Gaps = 41/338 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------KTKTE 62
           AWG   +GQLG G  +       ++  +   V SV AG  ++LA+  DG        +T+
Sbjct: 67  AWGDNSEGQLGQGVADTNPVATPIQVKDLTNVISVSAGGVHALALKADGTVWAWGNNETD 126

Query: 63  N----------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
                      IP QV  L N  IV  A G    LA+   G+ +AWG NEY Q     + 
Sbjct: 127 QLGVDQASPIAIPRQVEGLQN--IVAIAAGLEFSLALSSDGKVWAWGANEYKQINYFSDA 184

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP-------G 165
                      I  PQ       V ++AAG    + L  +G VWTWG    P       G
Sbjct: 185 ---------IKIATPQIVNNLSGVVKIAAGSAWCLALKNDGTVWTWGAQKVPMGNDDQDG 235

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           ++  I+   ++ G+  V  ++ G  H+LAL+ DG +W WG+NE  QLG+ D Q    P+ 
Sbjct: 236 EVTNITNLTQINGISDVISVSAGYSHSLALKGDGTVWGWGSNELLQLGSHDQQWFDSPVQ 295

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           +  L  +T V  +AG + + ALT+DG V+  G   +G+LG G    S   +P     +  
Sbjct: 296 ISPLKNVTTV--SAGAYLTMALTNDGTVWTLGGNIYGQLGNGIKADS---LPITAYPVKA 350

Query: 286 EDIVQ-VSCGGTHSVALTRD-GHIFSFGRGDHGRLGYG 321
            +I Q  S    +  AL R  G ++ +G    G+LG G
Sbjct: 351 SNITQATSISAGYGFALGRALGSVWGWGDNSKGQLGAG 388



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 127/269 (47%), Gaps = 20/269 (7%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           Q A G    LAVD QG  +AWG N  GQ G+        G      +  P +      V 
Sbjct: 48  QLAAGANFGLAVDAQGNVWAWGDNSEGQLGQ--------GVADTNPVATPIQVKDLTNVI 99

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            V+AGG H++ L  +G VW WG              I++P +V+GL+ +  IA G   +L
Sbjct: 100 SVSAGGVHALALKADGTVWAWGNNETDQLGVDQASPIAIPRQVEGLQNIVAIAAGLEFSL 159

Query: 194 ALQEDGALWAWGNNEYGQLGT-GDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           AL  DG +WAWG NEY Q+    D    + P  V  LSG  +V IAAG     AL +DG 
Sbjct: 160 ALSSDGKVWAWGANEYKQINYFSDAIKIATPQIVNNLSG--VVKIAAGSAWCLALKNDGT 217

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG  +   +G  D D     +     +    D++ VS G +HS+AL  DG ++ +G 
Sbjct: 218 VWTWG-AQKVPMGNDDQDGEVTNITNLTQINGISDVISVSAGYSHSLALKGDGTVWGWGS 276

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
            +  +LG   +    Q  + P+ I   +N
Sbjct: 277 NELLQLGSHDQ----QWFDSPVQISPLKN 301



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 11/186 (5%)

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQISVPVRVQGLEQVKLI 185
           P     Q+AAG    + +  +G+VW WG            D   ++ P++V+ L  V  +
Sbjct: 42  PAAASSQLAAGANFGLAVDAQGNVWAWGDNSEGQLGQGVADTNPVATPIQVKDLTNVISV 101

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
           + G  H LAL+ DG +WAWGNNE  QLG     P + P  V+GL    +V IAAG   S 
Sbjct: 102 SAGGVHALALKADGTVWAWGNNETDQLGVDQASPIAIPRQVEGLQ--NIVAIAAGLEFSL 159

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           AL+ DG+V+ WG  E+ ++ +  +D      PQ VN L+G  +V+++ G    +AL  DG
Sbjct: 160 ALSSDGKVWAWGANEYKQINYF-SDAIKIATPQIVNNLSG--VVKIAAGSAWCLALKNDG 216

Query: 306 HIFSFG 311
            ++++G
Sbjct: 217 TVWTWG 222


>gi|330802866|ref|XP_003289433.1| hypothetical protein DICPUDRAFT_153832 [Dictyostelium purpureum]
 gi|325080475|gb|EGC34029.1| hypothetical protein DICPUDRAFT_153832 [Dictyostelium purpureum]
          Length = 1719

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 130/262 (49%), Gaps = 20/262 (7%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           ++V  A GG H +A+   G  Y++GGN+  Q G         G I       PQ    + 
Sbjct: 217 RVVSVANGGKHTVALTVCGNVYSFGGNDSCQLG--------LGNISSSYYSTPQLVTFQS 268

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
                 +  +  ++++         Q       +Q S       ++++  ++     + A
Sbjct: 269 PQSLSNSNSSSPIIMSNSTSTLFNKQQ------QQSS-----NKIDRIIKLSCSTNRSAA 317

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + G L+ WG  + G+LG GD+  +S P  V  L G T+VD++ GG HS ALT  GEV+
Sbjct: 318 ISKLGYLYTWGRGDNGRLGHGDSLMQSTPKQVMSLHGHTIVDMSLGGGHSMALTKRGEVF 377

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WGRGE+G+LG G    S +M P+++     + I  +S GG HS+A+  +G +F++GRGD
Sbjct: 378 SWGRGENGQLGHG-TFTSQQMTPKQIQAFQNKTIKVISAGGYHSIAIDTNGSMFAWGRGD 436

Query: 315 HGRLGYGRKVTTGQPMEVPINI 336
           +G LG    + +   +  P+ I
Sbjct: 437 YGVLGVSSSLDSLGDINSPVLI 458



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 129/271 (47%), Gaps = 57/271 (21%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE-----QVKLIAVGA 189
           ++ G  H+ ++T +GH++TWG         G ++  S P  V+  E     +V  +A G 
Sbjct: 166 ISTGAIHTSIITDKGHLYTWGDGLLGKLGHGTLESYSEPRLVEFFETKPSLRVVSVANGG 225

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--------------------VQGL 229
            H +AL   G ++++G N+  QLG G+        P                    +   
Sbjct: 226 KHTVALTVCGNVYSFGGNDSCQLGLGNISSSYYSTPQLVTFQSPQSLSNSNSSSPIIMSN 285

Query: 230 SGLTL---------------VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           S  TL               + ++     S A++  G +Y WGRG++GRLG GD+   S 
Sbjct: 286 STSTLFNKQQQQSSNKIDRIIKLSCSTNRSAAISKLGYLYTWGRGDNGRLGHGDSLMQS- 344

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             P++V  L G  IV +S GG HS+ALT+ G +FS+GRG++G+LG+G    T Q M  P 
Sbjct: 345 -TPKQVMSLHGHTIVDMSLGGGHSMALTKRGEVFSWGRGENGQLGHG--TFTSQQM-TPK 400

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            I A +N           K+++ GG H++AI
Sbjct: 401 QIQAFQNK--------TIKVISAGGYHSIAI 423



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 36/189 (19%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS---GLTLVD 236
           E+V  I+ GA H   + + G L+ WG+   G+LG G  +  S+P  V+       L +V 
Sbjct: 161 EKVVFISTGAIHTSIITDKGHLYTWGDGLLGKLGHGTLESYSEPRLVEFFETKPSLRVVS 220

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG----------- 285
           +A GG H+ ALT  G VY +G  +  +LG G+   S    PQ V   +            
Sbjct: 221 VANGGKHTVALTVCGNVYSFGGNDSCQLGLGNISSSYYSTPQLVTFQSPQSLSNSNSSSP 280

Query: 286 ----------------------EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
                                 + I+++SC    S A+++ G+++++GRGD+GRLG+G  
Sbjct: 281 IIMSNSTSTLFNKQQQQSSNKIDRIIKLSCSTNRSAAISKLGYLYTWGRGDNGRLGHGDS 340

Query: 324 VTTGQPMEV 332
           +    P +V
Sbjct: 341 LMQSTPKQV 349



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 145/311 (46%), Gaps = 58/311 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE-NI 64
           ++ ++G  +  QLG+GN     +      L  ++    ++ S +S  I     T T  N 
Sbjct: 236 NVYSFGGNDSCQLGLGNISSSYYS--TPQLVTFQSPQSLSNSNSSSPIIMSNSTSTLFNK 293

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
             Q ++    +I++ +       A+   G  Y WG             + D GR+   D 
Sbjct: 294 QQQQSSNKIDRIIKLSCSTNRSAAISKLGYLYTWG-------------RGDNGRLGHGDS 340

Query: 125 VIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS------ 171
           ++  +  PK +       +  ++ GG HS+ LT+ G V++WG+    G+  Q+       
Sbjct: 341 LM--QSTPKQVMSLHGHTIVDMSLGGGHSMALTKRGEVFSWGR----GENGQLGHGTFTS 394

Query: 172 ---VPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR----SQ 222
               P ++Q  +   +K+I+ G +H++A+  +G+++AWG  +YG LG   +       + 
Sbjct: 395 QQMTPKQIQAFQNKTIKVISAGGYHSIAIDTNGSMFAWGRGDYGVLGVSSSLDSLGDINS 454

Query: 223 PIPVQGL------------SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           P+ ++ L            +G   +++++G  H+ A T++G++Y WG G   RLG  + +
Sbjct: 455 PVLIKSLNNSNGSNNSNSSAGERFINVSSGFQHNVAQTENGDLYSWGCGSGNRLGLANEE 514

Query: 271 KSSKMVPQKVN 281
             ++++P+K+N
Sbjct: 515 --NQLIPKKLN 523



 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 15/103 (14%)

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           +L   DN++      ++++ L  E +V +S G  H+  +T  GH++++G G  G+LG+G 
Sbjct: 144 KLELDDNEQY-----ERIDFLK-EKVVFISTGAIHTSIITDKGHLYTWGDGLLGKLGHGT 197

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
             +  +P  V      P         R ++  VA GG+HT+A+
Sbjct: 198 LESYSEPRLVEFFETKP-------SLRVVS--VANGGKHTVAL 231


>gi|340501848|gb|EGR28585.1| regulator of chromosome condensation, putative [Ichthyophthirius
           multifiliis]
          Length = 612

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 13/255 (5%)

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSV 147
           D  G  Y+WG N  GQ G   + K +  +  +  I  P+   P    I+ QV+ G  HSV
Sbjct: 128 DAIGVLYSWGQNTEGQMGNVYDPKTNNPKHRKIKINFPKLVYPLKDSIIIQVSCGYQHSV 187

Query: 148 VLTREGHVWTWGQPWPP------GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGAL 201
            +T  G+V  WG                I  PV++  ++ +  ++ G+ H LAL     +
Sbjct: 188 AITFNGNVLVWGDNSSSQLGLGINSPNSIYYPVQIPNIQNIINVSCGSEHTLALDNRNQV 247

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           ++WGN E G LG  + + ++ P  +     L +  I  GG HS ALT  G VY WGR E 
Sbjct: 248 YSWGNGEGGLLGHSNEEIQASPKIIDKFQDLQVEFIICGGLHSLALTKKGHVYSWGRNEG 307

Query: 262 GRLGFGDNDKSSKM----VPQKV-NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G+LG   +     +    +P+K+   L G  + Q++ G  HS+AL ++G +F +G   +G
Sbjct: 308 GQLGLNQDVLKDNLYFCCLPEKICGQLEGVFVKQIAAGDAHSLALAQNGQVFGWGYNING 367

Query: 317 RLGYGRKVTTGQPME 331
           +LG G++ +  Q  E
Sbjct: 368 QLGLGQQQSDKQVSE 382



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 180/424 (42%), Gaps = 89/424 (20%)

Query: 7   IIAWGSGEDGQLG------IGNNEEREW-VCVVKALEPYK---VRSVVAGSRNSLAICDD 56
           + +WG   +GQ+G        N + R+  +   K + P K   +  V  G ++S+AI  +
Sbjct: 133 LYSWGQNTEGQMGNVYDPKTNNPKHRKIKINFPKLVYPLKDSIIIQVSCGYQHSVAITFN 192

Query: 57  GKTKT--ENIPSQVNALSNT--------------KIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G      +N  SQ+    N+               I+  + G  H LA+D++ + Y+WG 
Sbjct: 193 GNVLVWGDNSSSQLGLGINSPNSIYYPVQIPNIQNIINVSCGSEHTLALDNRNQVYSWGN 252

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG- 159
            E G  G   E    + +I+ +           L V  +  GG HS+ LT++GHV++WG 
Sbjct: 253 GEGGLLGHSNEEIQASPKIIDK--------FQDLQVEFIICGGLHSLALTKKGHVYSWGR 304

Query: 160 ---------QPWPPGDIKQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNN 207
                    Q     ++    +P ++ G  +   VK IA G  H+LAL ++G ++ WG N
Sbjct: 305 NEGGQLGLNQDVLKDNLYFCCLPEKICGQLEGVFVKQIAAGDAHSLALAQNGQVFGWGYN 364

Query: 208 EYGQLGTGDTQPR---SQPIPVQGLS----------------GLTLVDIAAGGWHSTALT 248
             GQLG G  Q     S+P  ++ L                 G+  + I     H+ ++ 
Sbjct: 365 INGQLGLGQQQSDKQVSEPKQIKNLQKIEKVFCCGLNDQNQLGIEKLPIKIQNTHNQSIL 424

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL----TRD 304
           +          +  +      + ++  +P++++      ++ +SCG  HS+A     T+ 
Sbjct: 425 NQN----INIIDQYKANDNSKNNNNIYIPKRMDCFYQMPVLHLSCGHNHSLAFVLADTKH 480

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQ--PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
             +F++G   HG+LG G    TGQ   M  PI             +  IA  +ACG  H+
Sbjct: 481 YMVFAWGMNKHGQLGIG---DTGQNSSMARPITYL----------QDIIAYSMACGSYHS 527

Query: 363 LAIV 366
           L I+
Sbjct: 528 LLII 531



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 24/179 (13%)

Query: 199 GALWAWGNNEYGQLGT----GDTQPRSQPIPVQG------LSGLTLVDIAAGGWHSTALT 248
           G L++WG N  GQ+G         P+ + I +        L    ++ ++ G  HS A+T
Sbjct: 131 GVLYSWGQNTEGQMGNVYDPKTNNPKHRKIKINFPKLVYPLKDSIIIQVSCGYQHSVAIT 190

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            +G V  WG     +LG G N  +S   P  V +   ++I+ VSCG  H++AL     ++
Sbjct: 191 FNGNVLVWGDNSSSQLGLGINSPNSIYYP--VQIPNIQNIINVSCGSEHTLALDNRNQVY 248

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           S+G G+ G LG+  +     P  +           D      + + + CGG H+LA+ +
Sbjct: 249 SWGNGEGGLLGHSNEEIQASPKII-----------DKFQDLQV-EFIICGGLHSLALTK 295


>gi|224043366|ref|XP_002198142.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Taeniopygia
           guttata]
          Length = 537

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 22/230 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLAL 195
           G H V+ T +G V+ WG         G   Q   PV+V     +++V  +A G+ H++AL
Sbjct: 90  GPHVVLCTEDGEVYAWGHNGYSQLGNGTTNQGITPVQVCTNLLIKKVVEVACGSHHSMAL 149

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVY 254
             DG L+AWG N  GQ+G+G T  +  P  V   L G  +V IA G   S A+ ++GEVY
Sbjct: 150 SMDGDLYAWGYNNCGQVGSGSTANQPTPRRVSNCLQGKIVVGIACGQTSSMAVVNNGEVY 209

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
           GWG   +G+LG G+N   +++ P +V  L    ++Q++CG  H++ALT +G ++++G   
Sbjct: 210 GWGYNGNGQLGLGNN--GNQLTPCRVAALHSVCVLQIACGYAHTLALTDEGLLYAWGANT 267

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P+++ +            ++  + ++ AC   HT A
Sbjct: 268 YGQLGTGNKSNQLSPVQIMM------------EKERVVEIAACHSAHTSA 305



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 134/266 (50%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H +   + G  YAWG N Y Q G     +  
Sbjct: 63  GDNQSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVYAWGHNGYSQLGNGTTNQGI 122

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
           T   +  +++I +       V +VA G  HS+ L+ +G ++ WG         G      
Sbjct: 123 TPVQVCTNLLIKK-------VVEVACGSHHSMALSMDGDLYAWGYNNCGQVGSGSTANQP 175

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P RV    Q K+   IA G   ++A+  +G ++ WG N  GQLG G+   +  P  V  
Sbjct: 176 TPRRVSNCLQGKIVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA 235

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L  + ++ IA G  H+ ALTD+G +Y WG   +G+LG G  +KS+++ P ++ ++  E +
Sbjct: 236 LHSVCVLQIACGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNQLSPVQI-MMEKERV 292

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C   H S A T+ G ++ +G+
Sbjct: 293 VEIAACHSAHTSAAKTQSGQVYMWGQ 318



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 29/265 (10%)

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDI 167
           D G+     ++ PQ  A    +R+    GT    ++ +T    V+ +G         GD 
Sbjct: 9   DVGKWPIFTLLSPQEIAS---IRKACVFGTSANEAIYITHSDEVFVFGLNCSNCLGTGDN 65

Query: 168 KQISVPVRVQGL--EQVKLIAVGA-FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
           +   VP +++ L  +++  ++ G+  H +   EDG ++AWG+N Y QLG G T     P+
Sbjct: 66  QSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVYAWGHNGYSQLGNGTTNQGITPV 125

Query: 225 PV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NL 282
            V   L    +V++A G  HS AL+ DG++Y WG    G++G G    +++  P++V N 
Sbjct: 126 QVCTNLLIKKVVEVACGSHHSMALSMDGDLYAWGYNNCGQVGSGST--ANQPTPRRVSNC 183

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G+ +V ++CG T S+A+  +G ++ +G   +G+LG G     G  +  P  + A  + 
Sbjct: 184 LQGKIVVGIACGQTSSMAVVNNGEVYGWGYNGNGQLGLGNN---GNQL-TPCRVAALHSV 239

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                       +ACG  HTLA+ +
Sbjct: 240 --------CVLQIACGYAHTLALTD 256



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 23/224 (10%)

Query: 144 THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
           THS ++   G        WP   I  +  P  +  + +  +    A   + +     ++ 
Sbjct: 2   THSSIMVDVG-------KWP---IFTLLSPQEIASIRKACVFGTSANEAIYITHSDEVFV 51

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHG 262
           +G N    LGTGD Q    P  ++ L G  +  ++ G G H    T+DGEVY WG   + 
Sbjct: 52  FGLNCSNCLGTGDNQSTIVPKKLEALCGKKISSLSYGSGPHVVLCTEDGEVYAWGHNGYS 111

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           +LG G  ++    V    NLL  + +V+V+CG  HS+AL+ DG ++++G  + G++G G 
Sbjct: 112 QLGNGTTNQGITPVQVCTNLLI-KKVVEVACGSHHSMALSMDGDLYAWGYNNCGQVGSGS 170

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                       N P PR   + +  + +   +ACG   ++A+V
Sbjct: 171 TA----------NQPTPRRVSNCLQGKIVVG-IACGQTSSMAVV 203



 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 45/155 (29%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG   +GQLG+GNN  +   C V AL    V  +  G  ++LA+             
Sbjct: 208 VYGWGYNGNGQLGLGNNGNQLTPCRVAALHSVCVLQIACGYAHTLAL------------- 254

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                   D+G  YAWG N YGQ G      + + ++    I++
Sbjct: 255 -----------------------TDEGLLYAWGANTYGQLG----TGNKSNQLSPVQIMM 287

Query: 127 PQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
            +    + +V   A    H S   T+ G V+ WGQ
Sbjct: 288 EK----ERVVEIAACHSAHTSAAKTQSGQVYMWGQ 318


>gi|291401444|ref|XP_002717009.1| PREDICTED: hect domain and RLD 3-like [Oryctolagus cuniculus]
          Length = 974

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 15/206 (7%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAF 190
           K+ +  +A G  H +VL+ +G  + +         + I        L++  +I +  G +
Sbjct: 87  KMKIHSMAQGAEHVLVLSSDGKPFEYNYSIEHAKFQSI--------LQEKTIIQITCGDY 138

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALT 248
           H+LAL + G L+AWG N +GQLG G   P S P P  V+ L+G+ LV I+AG  HS  L+
Sbjct: 139 HSLALSKGGELFAWGQNSHGQLGIGVMCP-SVPTPQIVEHLAGVPLVQISAGEAHSMTLS 197

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
             G VY WG+ + G+LG G  +  +K  P  +  L  + +  V+CGG+H+  LT+DG +F
Sbjct: 198 MSGNVYSWGKNDLGQLGLGHTE--NKDSPCLIEALDNQKVEFVACGGSHTALLTQDGQLF 255

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPI 334
           +FG G +G+LG+  K    +P  V +
Sbjct: 256 TFGAGKYGQLGHKSKRNELKPRLVTV 281



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 31/230 (13%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           KI   A G  H L +   G+ +     EY    E  + +     IL+   +I        
Sbjct: 89  KIHSMAQGAEHVLVLSSDGKPF-----EYNYSIEHAKFQS----ILQEKTII-------- 131

Query: 135 IVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKL--IA 186
              Q+  G  HS+ L++ G ++ WGQ    G +        +  P  V+ L  V L  I+
Sbjct: 132 ---QITCGDYHSLALSKGGELFAWGQN-SHGQLGIGVMCPSVPTPQIVEHLAGVPLVQIS 187

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G  H++ L   G +++WG N+ GQLG G T+ +  P  ++ L    +  +A GG H+  
Sbjct: 188 AGEAHSMTLSMSGNVYSWGKNDLGQLGLGHTENKDSPCLIEALDNQKVEFVACGGSHTAL 247

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           LT DG+++ +G G++G+L  G   K +++ P+ V +L    + Q++CG T
Sbjct: 248 LTQDGQLFTFGAGKYGQL--GHKSKRNELKPRLVTVLVANRVTQIACGRT 295



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 25/187 (13%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           ++  +A GA H L L  DG  + +               + Q I    L   T++ I  G
Sbjct: 89  KIHSMAQGAEHVLVLSSDGKPFEYN--------YSIEHAKFQSI----LQEKTIIQITCG 136

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            +HS AL+  GE++ WG+  HG+LG G    S    PQ V  LAG  +VQ+S G  HS+ 
Sbjct: 137 DYHSLALSKGGELFAWGQNSHGQLGIGVMCPSVP-TPQIVEHLAGVPLVQISAGEAHSMT 195

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           L+  G+++S+G+ D G+LG G       P  +           + +D + + + VACGG 
Sbjct: 196 LSMSGNVYSWGKNDLGQLGLGHTENKDSPCLI-----------EALDNQKV-EFVACGGS 243

Query: 361 HTLAIVE 367
           HT  + +
Sbjct: 244 HTALLTQ 250



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 42/235 (17%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQ----VNALSNTKIVQAAIGGWHCLAVDDQGR 94
           K+ S+  G+ + L +  DGK    N   +     + L    I+Q   G +H LA+   G 
Sbjct: 89  KIHSMAQGAEHVLVLSSDGKPFEYNYSIEHAKFQSILQEKTIIQITCGDYHSLALSKGGE 148

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSV 147
            +AWG N +GQ G                ++ P    P+++       + Q++AG  HS+
Sbjct: 149 LFAWGQNSHGQLG--------------IGVMCPSVPTPQIVEHLAGVPLVQISAGEAHSM 194

Query: 148 VLTREGHVWTWGQPWPPGDIKQISV--------PVRVQGL--EQVKLIAVGAFHNLALQE 197
            L+  G+V++WG+     D+ Q+ +        P  ++ L  ++V+ +A G  H   L +
Sbjct: 195 TLSMSGNVYSWGK----NDLGQLGLGHTENKDSPCLIEALDNQKVEFVACGGSHTALLTQ 250

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           DG L+ +G  +YGQLG    +   +P  V  L    +  IA G    T L  D E
Sbjct: 251 DGQLFTFGAGKYGQLGHKSKRNELKPRLVTVLVANRVTQIACG---RTILNSDVE 302



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 45/154 (29%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + AWG    GQLGIG                               +C    T     P 
Sbjct: 149 LFAWGQNSHGQLGIG------------------------------VMCPSVPT-----PQ 173

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIV 125
            V  L+   +VQ + G  H + +   G  Y+WG N+ GQ G    E KD    I   D  
Sbjct: 174 IVEHLAGVPLVQISAGEAHSMTLSMSGNVYSWGKNDLGQLGLGHTENKDSPCLIEALD-- 231

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
             Q+      V  VA GG+H+ +LT++G ++T+G
Sbjct: 232 -NQK------VEFVACGGSHTALLTQDGQLFTFG 258



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 44/144 (30%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + ++ +WG  + GQLG+G+ E ++  C+++AL+  KV  V                 
Sbjct: 196 LSMSGNVYSWGKNDLGQLGLGHTENKDSPCLIEALDNQKVEFV----------------- 238

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                              A GG H   +   G+ + +G  +YGQ G + +R +   R++
Sbjct: 239 -------------------ACGGSHTALLTQDGQLFTFGAGKYGQLGHKSKRNELKPRLV 279

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGT 144
              +++  R      V Q+A G T
Sbjct: 280 --TVLVANR------VTQIACGRT 295


>gi|294816123|ref|ZP_06774766.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|294328722|gb|EFG10365.1| BNR repeat domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 527

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 40/285 (14%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT------HSVVLT 150
           +WG N  GQ G           ++ R    P    PK  V+Q+AAG         +V L 
Sbjct: 154 SWGANVTGQLGN--------ATMIDRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALL 205

Query: 151 REGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDG----A 200
            +  VWTWGQ    G +      K I VP RV GL  +  +A G+ H LAL+ +G     
Sbjct: 206 NDNTVWTWGQN-DKGQLGTGLVTKAIPVPGRVPGLNGITQVAAGSLHALALRNNGDPQDG 264

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +WAWG+N +GQLG     P++ P+PVQGL+G   + +A G  HS AL + G +  WG  +
Sbjct: 265 VWAWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGNND 324

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+L  G++      +P +V  L    +V+++ G   S+A   DG I ++G   HG LG 
Sbjct: 325 KGQL--GNDTILLSTIPVEVKNLT-SPVVEIAAGCNFSLARLADGTIKAWGENGHGELGN 381

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+   +  P+ V    P              A+ +  GG H+ A+
Sbjct: 382 GQTANSLTPVSVTGLPPGS------------AERIVAGGNHSYAL 414



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 153/354 (43%), Gaps = 59/354 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAG------SRNSLAICDDGK-- 58
           + +WG+   GQLG     +R     + AL    V+ + AG      S  ++A+ +D    
Sbjct: 152 VQSWGANVTGQLGNATMIDRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALLNDNTVW 211

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAV----DDQGRAYAWG 99
                          TK   +P +V  L+   I Q A G  H LA+    D Q   +AWG
Sbjct: 212 TWGQNDKGQLGTGLVTKAIPVPGRVPGLNG--ITQVAAGSLHALALRNNGDPQDGVWAWG 269

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            N +GQ G+           + + + +P +         VA G  HS+ L   G +  WG
Sbjct: 270 DNIHGQLGDSTN--------VPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWG 321

Query: 160 QPWPPGDIKQI--------SVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                 D  Q+        ++PV V+ L   V  IA G   +LA   DG + AWG N +G
Sbjct: 322 N----NDKGQLGNDTILLSTIPVEVKNLTSPVVEIAAGCNFSLARLADGTIKAWGENGHG 377

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-N 269
           +LG G T     P+ V GL   +   I AGG HS AL  D  VYGWG  + G+L  G  N
Sbjct: 378 ELGNGQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSNDKGQLADGTIN 437

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG--HIFSFGRGDHGRLGYG 321
            ++  M   K+       +  ++ G  + +ALT DG  +I  +G    G+LG G
Sbjct: 438 PRTQAMQASKL-----PKVTSIAAGKDYGIALT-DGNQNIIGWGNNARGQLGSG 485



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 138/317 (43%), Gaps = 54/317 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALE-PYKV------RSVVAGSRNSLAI 53
           + +  ++  WG  + GQLG G         V KA+  P +V        V AGS ++LA+
Sbjct: 204 LLNDNTVWTWGQNDKGQLGTG--------LVTKAIPVPGRVPGLNGITQVAAGSLHALAL 255

Query: 54  CDDGKTK--------------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
            ++G  +                     + +P  V  L+ +  +  A G  H LA+ + G
Sbjct: 256 RNNGDPQDGVWAWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGG 315

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
              AWG N+ GQ G      +DT  IL   I +  +     +V ++AAG   S+    +G
Sbjct: 316 TLMAWGNNDKGQLG------NDT--ILLSTIPVEVKNLTSPVV-EIAAGCNFSLARLADG 366

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNN 207
            +  WG+        G       PV V GL     + I  G  H+ AL  D  ++ WG+N
Sbjct: 367 TIKAWGENGHGELGNGQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSN 426

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGF 266
           + GQL  G   PR+Q +    L  +T   IAAG  +  ALTD  + + GWG    G+LG 
Sbjct: 427 DKGQLADGTINPRTQAMQASKLPKVT--SIAAGKDYGIALTDGNQNIIGWGNNARGQLGS 484

Query: 267 GDNDKSSKMVPQKVNLL 283
           G  D  + +V Q   +L
Sbjct: 485 GTTDPHT-LVGQDTPVL 500


>gi|168016500|ref|XP_001760787.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688147|gb|EDQ74526.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 168/408 (41%), Gaps = 104/408 (25%)

Query: 46  GSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYG 104
           GS   L  C     K + +P      + + IVQAA GGW HC AV   G  + WG   + 
Sbjct: 54  GSTTELGQCYLISGKQQELPEPYPLPTESPIVQAA-GGWAHCAAVTGGGEVFTWG---WS 109

Query: 105 QC---------------GEEPERKDDTGRILRRDI------------------------- 124
           +C               G++      +GR   R++                         
Sbjct: 110 ECVPSIQPTPDESEQVQGDDASACKQSGRQTHRNLTCKTTDSKGAEEILKKRKIVSFEHG 169

Query: 125 ------------VIPQRCA----PKLIVRQVAAGGTHSVVLTRE------GHVWTWG--- 159
                       V    C     P + +  VAAGG H++ L+ E      GHVW WG   
Sbjct: 170 ESPESPTAAEENVFAPPCLVNLDPGIRISIVAAGGRHTLALSGEFSFKYVGHVWGWGYGG 229

Query: 160 --QPWPPGDIKQISVPVRVQGL----------------EQVKLIAVGAFHNLALQEDGAL 201
             Q      ++ +S P  +                     +K IA G  H+  + + GAL
Sbjct: 230 EGQLGLGTRMRIVSSPQLIPCFNSPENGISSSGAPIPGSSIKAIACGGRHSAIVTDAGAL 289

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
             +G   YGQ+G G  +    P  V  + GL +  IAAG WH+  +TD G+VY +G  + 
Sbjct: 290 LTFGWGLYGQVGQGSNEDELSPCLVSAMGGLQVTGIAAGLWHTLCITDIGDVYAFGGNQF 349

Query: 262 GRLGFGDNDKSSKMVPQKVN--LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           G+LG G N  S++M P+ ++  LL  E  V V+CG  HSV LT  G IF++G   +G+LG
Sbjct: 350 GQLGVGGN--SAEMSPRLIDAPLLEDESCVAVACGARHSVVLTGSGKIFAWGWNKYGQLG 407

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G       P++V +N        DG      A  +ACG  HTLA V 
Sbjct: 408 LGDNNNRDLPVQVTMN--------DGGR----AANIACGWWHTLATVH 443



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 99/268 (36%), Gaps = 83/268 (30%)

Query: 10  WGSGEDGQLGIG---------------NNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           WG G +GQLG+G               N+ E         +    ++++  G R+S  + 
Sbjct: 225 WGYGGEGQLGLGTRMRIVSSPQLIPCFNSPENGISSSGAPIPGSSIKAIACGGRHSAIVT 284

Query: 55  DDGKTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           D G   T                E  P  V+A+   ++   A G WH L + D G  YA+
Sbjct: 285 DAGALLTFGWGLYGQVGQGSNEDELSPCLVSAMGGLQVTGIAAGLWHTLCITDIGDVYAF 344

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           GGN++GQ G      + + R++   ++  + C        VA G  HSVVLT  G ++ W
Sbjct: 345 GGNQFGQLGVGGNSAEMSPRLIDAPLLEDESCV------AVACGARHSVVLTGSGKIFAW 398

Query: 159 GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
           G  W                                            N+YGQLG GD  
Sbjct: 399 G--W--------------------------------------------NKYGQLGLGDNN 412

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            R  P+ V    G    +IA G WH+ A
Sbjct: 413 NRDLPVQVTMNDGGRAANIACGWWHTLA 440



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 97/255 (38%), Gaps = 81/255 (31%)

Query: 188 GAFHNLALQEDGALWAWGNN-EYGQ--LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW-H 243
           G    +A+ E G L  WG+  E GQ  L +G  Q   +P P+   S +     AAGGW H
Sbjct: 37  GCGFGIAISESGKLNTWGSTTELGQCYLISGKQQELPEPYPLPTESPIVQ---AAGGWAH 93

Query: 244 STALTDDGEVYGW------------------------------GRGEHGRLGFGDND-KS 272
             A+T  GEV+ W                              GR  H  L     D K 
Sbjct: 94  CAAVTGGGEVFTWGWSECVPSIQPTPDESEQVQGDDASACKQSGRQTHRNLTCKTTDSKG 153

Query: 273 SKMVPQKVNLL-------------AGEDIVQVSC---------------GGTHSVALTRD 304
           ++ + +K  ++             A E++    C               GG H++AL+ +
Sbjct: 154 AEEILKKRKIVSFEHGESPESPTAAEENVFAPPCLVNLDPGIRISIVAAGGRHTLALSGE 213

Query: 305 ------GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA------ 352
                 GH++ +G G  G+LG G ++     +  P  IP   +  +G+            
Sbjct: 214 FSFKYVGHVWGWGYGGEGQLGLGTRMRI---VSSPQLIPCFNSPENGISSSGAPIPGSSI 270

Query: 353 KLVACGGRHTLAIVE 367
           K +ACGGRH+  + +
Sbjct: 271 KAIACGGRHSAIVTD 285


>gi|315506657|ref|YP_004085544.1| hyalin [Micromonospora sp. L5]
 gi|315413276|gb|ADU11393.1| Hyalin [Micromonospora sp. L5]
          Length = 1017

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 144/290 (49%), Gaps = 29/290 (10%)

Query: 59  TKTENIPSQVNALSNTKIVQA---AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           T T++  +  +     +I+ A   A G  H LAV+D     AWG N  GQ G        
Sbjct: 638 TATDDSGNSASCDQKVRIIYAPPVAAGKGHSLAVNDDDTVSAWGDNLLGQLGN------- 690

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
            G I      +P      ++   V++G   S  LTR G V +WG+        G   Q  
Sbjct: 691 -GSIFSETTAVPVSGLSGILA--VSSGDASSYALTRSGVVHSWGENLLGQLGNGSRLQSR 747

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            PV+V GL   K IA G  H LAL+ DG + AWG+N  GQLG       ++P  V GL+ 
Sbjct: 748 RPVQVDGLTGAKQIAAGNDHVLALKSDGTVAAWGSNLAGQLGRTGVLSATKPAAVPGLT- 806

Query: 232 LTLVDIAAGGW-----HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
            ++V +AAGG      HS AL  DG V+ WG G +G+LG GD+   S   P +V  L+  
Sbjct: 807 -SVVQVAAGGTPGLAGHSVALKGDGTVWTWGHGLNGQLGLGDH--RSTATPTQVPGLS-- 861

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           ++V ++  G ++ AL  DG ++++G G+HG++G     T  Q   + +NI
Sbjct: 862 NVVLIAADGNNTYALKSDGTVWAWGDGNHGQIG-NPDATHSQTTPLKVNI 910



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 158/353 (44%), Gaps = 45/353 (12%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--EN 63
            ++ AWG    GQLG G+         V  L    + +V +G  +S A+   G   +  EN
Sbjct: 676  TVSAWGDNLLGQLGNGSIFSETTAVPVSGLS--GILAVSSGDASSYALTRSGVVHSWGEN 733

Query: 64   I--------------PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
            +              P QV+ L+  K  Q A G  H LA+   G   AWG N  GQ G  
Sbjct: 734  LLGQLGNGSRLQSRRPVQVDGLTGAK--QIAAGNDHVLALKSDGTVAAWGSNLAGQLGR- 790

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT-----HSVVLTREGHVWTWGQ---- 160
                  TG +       P        V QVAAGGT     HSV L  +G VWTWG     
Sbjct: 791  ------TGVL---SATKPAAVPGLTSVVQVAAGGTPGLAGHSVALKGDGTVWTWGHGLNG 841

Query: 161  PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD-TQP 219
                GD +  + P +V GL  V LIA    +  AL+ DG +WAWG+  +GQ+G  D T  
Sbjct: 842  QLGLGDHRSTATPTQVPGLSNVVLIAADGNNTYALKSDGTVWAWGDGNHGQIGNPDATHS 901

Query: 220  RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            ++ P+ V  +SG+  V I AG   + A+  DG V+GWG    G+LG   +       P K
Sbjct: 902  QTTPLKVN-ISGV--VSIDAGSTTAMAVKGDGTVWGWGSNASGQLGDDRDCGLHCSTPVK 958

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             + L G     ++ G  HS+ +  DG++  +G    G+LG G +     P  V
Sbjct: 959  ASGLTGAG--WIASGLLHSLVVNTDGNVHGYGGNLLGQLGNGTRKGATTPTTV 1009



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 109/279 (39%), Gaps = 63/279 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  ++ AWGS   GQLG           V+ A +P  V  +                 
Sbjct: 771 LKSDGTVAAWGSNLAGQLG--------RTGVLSATKPAAVPGL----------------- 805

Query: 61  TENIPSQVNALSNTKIVQAAIGGW-----HCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
                        T +VQ A GG      H +A+   G  + WG    GQ G    R   
Sbjct: 806 -------------TSVVQVAAGGTPGLAGHSVALKGDGTVWTWGHGLNGQLGLGDHRSTA 852

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQI 170
           T          P +      V  +AA G ++  L  +G VW W     GQ   P      
Sbjct: 853 T----------PTQVPGLSNVVLIAADGNNTYALKSDGTVWAWGDGNHGQIGNPDATHSQ 902

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT--QPRSQPIPVQG 228
           + P++V  +  V  I  G+   +A++ DG +W WG+N  GQLG         S P+   G
Sbjct: 903 TTPLKVN-ISGVVSIDAGSTTAMAVKGDGTVWGWGSNASGQLGDDRDCGLHCSTPVKASG 961

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           L+G     IA+G  HS  +  DG V+G+G    G+LG G
Sbjct: 962 LTGAGW--IASGLLHSLVVNTDGNVHGYGGNLLGQLGNG 998


>gi|348542108|ref|XP_003458528.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Oreochromis
            niloticus]
          Length = 4936

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 35/282 (12%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            + WG   +GQ  E             R+I++P         +QV  G   + V+   G V
Sbjct: 4075 FLWGAGRHGQLAEA-----------GRNILVPTIAPSFSQAQQVVCGQNCTFVIQPNGTV 4123

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 4124 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 4183

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 4184 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGNGDYGRLGL 4243

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG-HIFSFGRGDHGRLGYGRKVT 325
            G+   S+K +P+KV  L G  + QV+CG  H++ ++ DG  +++FG GD+G+LG G    
Sbjct: 4244 GNT--SNKKLPEKVTALEGYHVGQVACGLNHTLVVSADGMMVWAFGDGDYGKLGLGNSTA 4301

Query: 326  TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               P +V +        G G+      K VACG + ++A+ +
Sbjct: 4302 KSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 4331



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 173/369 (46%), Gaps = 59/369 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S  S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S     DG   
Sbjct: 425 ISSDGSVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRAIKKVSSSKGS-----DG--- 475

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                   H LA   +G  ++WG  +YG+ G          +++
Sbjct: 476 ------------------------HTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLI 511

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
           +  +          +V  V+AG  HS  ++ +G ++TWG+        GD    ++P  V
Sbjct: 512 QGPL-------QGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGRLGHGDSNSRNIPTLV 564

Query: 177 QGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           + +  V  ++ G+ H +AL +DG  +W++G  + G+LG GDT    +P  V+ L G+ + 
Sbjct: 565 KDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVVEALQGMFIR 624

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            + AG   S ALT  G+VY WG G    LG G ++ ++ + P+ +  LA   +V +S G 
Sbjct: 625 KVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE-ATALRPKLIEELATTRVVDISIGD 681

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           +H +AL+ D  ++++G    G+ G G   +TG     PI  P      DGV  + I    
Sbjct: 682 SHCLALSHDNEVYAWGNNSMGQCGQGN--STG-----PITKPKKVIGLDGVAIQQI---- 730

Query: 356 ACGGRHTLA 364
           + G  H+LA
Sbjct: 731 SAGTSHSLA 739



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 157/337 (46%), Gaps = 56/337 (16%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 4122 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 4156

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 4157 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 4208

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P +V  
Sbjct: 4209 EEVV-----------QMSCGFKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPEKVTA 4257

Query: 179  LE--QVKLIAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            LE   V  +A G  H L +  DG + WA+G+ +YG+LG G++  +S P  V  L G+ + 
Sbjct: 4258 LEGYHVGQVACGLNHTLVVSADGMMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4317

Query: 236  DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
             +A G   S ALT DG+V+ +G+     +G  +    +   PQ+V  L+G  I  V+ G 
Sbjct: 4318 KVACGTQFSVALTKDGKVFTFGQDR--LIGLPEGRARNHNRPQQVPGLSGIHIQDVAVGA 4375

Query: 296  THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H++ L+  G ++++G    G+LG G      +P  V
Sbjct: 4376 EHTLVLSSTGDVYTWGSNSEGQLGLGHTNHVREPTLV 4412



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 137/266 (51%), Gaps = 19/266 (7%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  + G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 4105 QQVVCGQNCTFVIQPNGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 4157

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 4158 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 4217

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +  +A G  H+  ++
Sbjct: 4218 FKHSAVVTADGKLFTFGNGDYGRLGLGNTSNKKLPEKVTALEGYHVGQVACGLNHTLVVS 4277

Query: 249  DDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVALT+DG +
Sbjct: 4278 ADGMMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGKV 4335

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVP 333
            F+FG+     L  GR     +P +VP
Sbjct: 4336 FTFGQDRLIGLPEGRARNHNRPQQVP 4361



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 478 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDG 537

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 538 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 595

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 596 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 647

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 648 GACLGCGSSEATALRPKLIEELATTRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 707

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 708 NSTGPITKPKKVIGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 754



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 133/273 (48%), Gaps = 33/273 (12%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 4170 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGK 4229

Query: 59   ----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG-RAYAWGGN 101
                            T  + +P +V AL    + Q A G  H L V   G   +A+G  
Sbjct: 4230 LFTFGNGDYGRLGLGNTSNKKLPEKVTALEGYHVGQVACGLNHTLVVSADGMMVWAFGDG 4289

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +YG+ G        + +  + D++    C   + +++VA G   SV LT++G V+T+GQ 
Sbjct: 4290 DYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGKVFTFGQD 4341

Query: 162  ----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                 P G  +  + P +V GL  + +  +AVGA H L L   G ++ WG+N  GQLG G
Sbjct: 4342 RLIGLPEGRARNHNRPQQVPGLSGIHIQDVAVGAEHTLVLSSTGDVYTWGSNSEGQLGLG 4401

Query: 216  DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             T    +P  V  L G  +  I+AG  HS A T
Sbjct: 4402 HTNHVREPTLVTTLQGKNIHQISAGRCHSAAWT 4434


>gi|422004219|ref|ZP_16351440.1| RCC1 domain-containing protein [Leptospira santarosai serovar
           Shermani str. LT 821]
 gi|417257019|gb|EKT86426.1| RCC1 domain-containing protein [Leptospira santarosai serovar
           Shermani str. LT 821]
          Length = 477

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 145/349 (41%), Gaps = 49/349 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A   S+  WG+   GQLGIGNN           L P  V  +           DD    
Sbjct: 166 IAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-----------DDA--- 211

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                           V  A G  H L +   G   ++G N  GQ G      +      
Sbjct: 212 ----------------VMGAYGFNHALILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFST 255

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 256 NPAAVVNLRD-----VIQVIAGSEHSAALTENGEVYVWGKNQYGNLGNGRLSAANTVQ-S 309

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   PIP Q L+
Sbjct: 310 TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGGSGFPNPTPIPTQVLN 369

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
                 + AGG  S ++   GEV GWG  G    L  G+ + S    P K  ++  E+++
Sbjct: 370 ITNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTSKVYEPNKA-VVGIENVI 428

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIP 337
              CG TH+ AL R+G I+ +G    G LG     +  G P  V I +P
Sbjct: 429 HFGCGATHNFALLRNGEIYGWGWNFKGSLGRQDLQSNWGAPNPVSITLP 477



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 117/264 (44%), Gaps = 37/264 (14%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y  G N +GQ G      D+       D+++       +    +     +S+ + +
Sbjct: 116 NGNVYTVGRNNFGQLGTGHSTGDN-----NNDVIVLLDSIRDIF--SIHFNQNNSMAIAK 168

Query: 152 EGHVWTWGQPWPPGDIKQISV----------------PVRVQGLEQVKLIAVGAFHNLAL 195
            G V+TWG         Q+ +                P  V G++   + A G  H L L
Sbjct: 169 NGSVYTWGNNAK----GQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMGAYGFNHALIL 224

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA---AGGWHSTALTDDGE 252
           + DG L ++G N  GQLG G+             + + L D+    AG  HS ALT++GE
Sbjct: 225 KSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPAAVVNLRDVIQVIAGSEHSAALTENGE 284

Query: 253 VYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           VY WG+ ++G LG G    ++ +   P KV  L+G  I Q++ G  H +AL  DG I+S+
Sbjct: 285 VYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIYSW 342

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPI 334
           G    G+LG G    +G P   PI
Sbjct: 343 GLNASGQLGIG---GSGFPNPTPI 363



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 25/218 (11%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP--------WPPGDIKQISVPVRVQGLEQVKLIAVGA 189
           +++AG  HS  L + G+V+T G+            GD     V V +  +  +  I    
Sbjct: 103 KLSAGAAHSGFL-KNGNVYTVGRNNFGQLGTGHSTGDNNN-DVIVLLDSIRDIFSIHFNQ 160

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTG--------DTQPRSQPIPVQGLSGLTLVDIAAGG 241
            +++A+ ++G+++ WGNN  GQLG G        +   R  P  V G+    +   A G 
Sbjct: 161 NNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMG--AYGF 218

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGD---NDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            H+  L  DG +  +G+   G+LG G+   N  S    P  V  L   D++QV  G  HS
Sbjct: 219 NHALILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPAAVVNL--RDVIQVIAGSEHS 276

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
            ALT +G ++ +G+  +G LG GR          P+ +
Sbjct: 277 AALTENGEVYVWGKNQYGNLGNGRLSAANTVQSTPVKV 314


>gi|383319251|ref|YP_005380092.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320621|gb|AFC99573.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 447

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 138/313 (44%), Gaps = 33/313 (10%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
            NS     DG  +    P QV  L+  K + A  G    LA+   G  +AWG N YGQ G
Sbjct: 96  SNSYGELGDGTNENSIEPVQVAGLTGVKAISAGKG--FSLALKGDGSVWAWGSNTYGQLG 153

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WP 163
           + P        +     + P +      V  ++ GG+H   L   G +W WG+       
Sbjct: 154 KNP--------LSFMGSLTPIQVEGLEGVVSISCGGSHCFALQENGVLWAWGENSHGILG 205

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
            G  +    PV+ + ++ VK    G   H LA++EDG++WAWG N  GQLGTG      Q
Sbjct: 206 DGTNESQFKPVKPK-IKDVKAFDAGELSHALAVKEDGSVWAWGFNYKGQLGTGGVSLSDQ 264

Query: 223 -------------PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
                        P  V+G+S    V  AAGG HS AL  DG V+ WG    G+LG G  
Sbjct: 265 GRISLGREADNYNPDIVRGVSDAKAV--AAGGSHSVALASDGSVWAWGSNSDGQLGLGHA 322

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
             S    P +V  +  E +  ++ G  H++AL  DG ++++G    G+LG         P
Sbjct: 323 GGSDVTSPTRVQGI--EGVTAIAAGMYHTLALKGDGSVWAWGSNSDGQLGNASFSAASSP 380

Query: 330 MEVPINIPAPRNA 342
           + + I    P  A
Sbjct: 381 VPILIGPQIPTAA 393



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 151/315 (47%), Gaps = 42/315 (13%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHC--LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILR 121
           I +Q  ALS   +   AI   +C  +A+ + G  + WG    G     P+R D +G    
Sbjct: 19  ISAQAGALSPQAV---AIAASNCTSVALLEDGSVWQWGRVCDGVEWSAPQRVDISG---- 71

Query: 122 RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
                         VRQ+AAG  H + L  +G VW WG         G  +    PV+V 
Sbjct: 72  --------------VRQIAAGSGHVLALKGDGTVWAWGSNSYGELGDGTNENSIEPVQVA 117

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-----QPIPVQGLSGL 232
           GL  VK I+ G   +LAL+ DG++WAWG+N YGQLG     P S      PI V+GL G 
Sbjct: 118 GLTGVKAISAGKGFSLALKGDGSVWAWGSNTYGQLG---KNPLSFMGSLTPIQVEGLEG- 173

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +V I+ GG H  AL ++G ++ WG   HG LG G N+   K V  K+  +   D  ++S
Sbjct: 174 -VVSISCGGSHCFALQENGVLWAWGENSHGILGDGTNESQFKPVKPKIKDVKAFDAGELS 232

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
               H++A+  DG ++++G    G+LG G  V+      + +   A     D V     A
Sbjct: 233 ----HALAVKEDGSVWAWGFNYKGQLGTG-GVSLSDQGRISLGREADNYNPDIVRGVSDA 287

Query: 353 KLVACGGRHTLAIVE 367
           K VA GG H++A+  
Sbjct: 288 KAVAAGGSHSVALAS 302



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 117/258 (45%), Gaps = 51/258 (19%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGS------------ 47
           S+ AWGS   GQLG      +  +  + +L P +V       S+  G             
Sbjct: 140 SVWAWGSNTYGQLG------KNPLSFMGSLTPIQVEGLEGVVSISCGGSHCFALQENGVL 193

Query: 48  ----RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGN 101
                NS  I  DG  +++  P +       K V+A   G   H LAV + G  +AWG N
Sbjct: 194 WAWGENSHGILGDGTNESQFKPVK----PKIKDVKAFDAGELSHALAVKEDGSVWAWGFN 249

Query: 102 EYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHV 155
             GQ G       D GRI L R+        P ++      + VAAGG+HSV L  +G V
Sbjct: 250 YKGQLGTGGVSLSDQGRISLGRE---ADNYNPDIVRGVSDAKAVAAGGSHSVALASDGSV 306

Query: 156 WTWGQPWPPGDI-------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           W WG     G +         ++ P RVQG+E V  IA G +H LAL+ DG++WAWG+N 
Sbjct: 307 WAWGSN-SDGQLGLGHAGGSDVTSPTRVQGIEGVTAIAAGMYHTLALKGDGSVWAWGSNS 365

Query: 209 YGQLGTGDTQPRSQPIPV 226
            GQLG       S P+P+
Sbjct: 366 DGQLGNASFSAASSPVPI 383


>gi|254390852|ref|ZP_05006063.1| BNR repeat domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704550|gb|EDY50362.1| BNR repeat domain-containing protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 564

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 40/285 (14%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT------HSVVLT 150
           +WG N  GQ G           ++ R    P    PK  V+Q+AAG         +V L 
Sbjct: 191 SWGANVTGQLGNA--------TMIDRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALL 242

Query: 151 REGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKLIAVGAFHNLALQEDG----A 200
            +  VWTWGQ    G +      K I VP RV GL  +  +A G+ H LAL+ +G     
Sbjct: 243 NDNTVWTWGQN-DKGQLGTGLVTKAIPVPGRVPGLNGITQVAAGSLHALALRNNGDPQDG 301

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +WAWG+N +GQLG     P++ P+PVQGL+G   + +A G  HS AL + G +  WG  +
Sbjct: 302 VWAWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWGNND 361

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+L  G++      +P +V  L    +V+++ G   S+A   DG I ++G   HG LG 
Sbjct: 362 KGQL--GNDTILLSTIPVEVKNLT-SPVVEIAAGCNFSLARLADGTIKAWGENGHGELGN 418

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+   +  P+ V    P              A+ +  GG H+ A+
Sbjct: 419 GQTANSLTPVSVTGLPPGS------------AERIVAGGNHSYAL 451



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 153/354 (43%), Gaps = 59/354 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAG------SRNSLAICDDGK-- 58
           + +WG+   GQLG     +R     + AL    V+ + AG      S  ++A+ +D    
Sbjct: 189 VQSWGANVTGQLGNATMIDRYAPTPIPALPKQDVQQLAAGADATSGSGFAVALLNDNTVW 248

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAV----DDQGRAYAWG 99
                          TK   +P +V  L+   I Q A G  H LA+    D Q   +AWG
Sbjct: 249 TWGQNDKGQLGTGLVTKAIPVPGRVPGLNG--ITQVAAGSLHALALRNNGDPQDGVWAWG 306

Query: 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            N +GQ G+           + + + +P +         VA G  HS+ L   G +  WG
Sbjct: 307 DNIHGQLGDSTN--------VPKTVPVPVQGLTGSGTIAVATGCEHSLALREGGTLMAWG 358

Query: 160 QPWPPGDIKQI--------SVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYG 210
                 D  Q+        ++PV V+ L   V  IA G   +LA   DG + AWG N +G
Sbjct: 359 N----NDKGQLGNDTILLSTIPVEVKNLTSPVVEIAAGCNFSLARLADGTIKAWGENGHG 414

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-N 269
           +LG G T     P+ V GL   +   I AGG HS AL  D  VYGWG  + G+L  G  N
Sbjct: 415 ELGNGQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSNDKGQLADGTIN 474

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG--HIFSFGRGDHGRLGYG 321
            ++  M   K+       +  ++ G  + +ALT DG  +I  +G    G+LG G
Sbjct: 475 PRTQAMQASKL-----PKVTSIAAGKDYGIALT-DGNQNIIGWGNNARGQLGSG 522



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 138/317 (43%), Gaps = 54/317 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALE-PYKV------RSVVAGSRNSLAI 53
           + +  ++  WG  + GQLG G         V KA+  P +V        V AGS ++LA+
Sbjct: 241 LLNDNTVWTWGQNDKGQLGTG--------LVTKAIPVPGRVPGLNGITQVAAGSLHALAL 292

Query: 54  CDDGKTK--------------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG 93
            ++G  +                     + +P  V  L+ +  +  A G  H LA+ + G
Sbjct: 293 RNNGDPQDGVWAWGDNIHGQLGDSTNVPKTVPVPVQGLTGSGTIAVATGCEHSLALREGG 352

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
              AWG N+ GQ G      +DT  IL   I +  +     +V ++AAG   S+    +G
Sbjct: 353 TLMAWGNNDKGQLG------NDT--ILLSTIPVEVKNLTSPVV-EIAAGCNFSLARLADG 403

Query: 154 HVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNN 207
            +  WG+        G       PV V GL     + I  G  H+ AL  D  ++ WG+N
Sbjct: 404 TIKAWGENGHGELGNGQTANSLTPVSVTGLPPGSAERIVAGGNHSYALYSDYRVYGWGSN 463

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE-VYGWGRGEHGRLGF 266
           + GQL  G   PR+Q +    L  +T   IAAG  +  ALTD  + + GWG    G+LG 
Sbjct: 464 DKGQLADGTINPRTQAMQASKLPKVT--SIAAGKDYGIALTDGNQNIIGWGNNARGQLGS 521

Query: 267 GDNDKSSKMVPQKVNLL 283
           G  D  + +V Q   +L
Sbjct: 522 GTTDPHT-LVGQDTPVL 537


>gi|295789057|ref|NP_001171422.1| X-linked retinitis pigmentosa GTPase regulator isoform 2 [Mus
           musculus]
 gi|26325790|dbj|BAC26649.1| unnamed protein product [Mus musculus]
          Length = 972

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 172 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 228

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 229 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 287

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 288 CGGGHTVVLTEKV-VYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 345

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 346 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 395

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 396 GCHMLVF 402



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 196

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 197 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 252

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 253 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 298



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 51  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 106

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 107 --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 158

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 159 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 216

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 217 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 276

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 277 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 327

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 328 ----ERIKDQKICH-ISCGENHTALMTEL 351


>gi|383319155|ref|YP_005379996.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320525|gb|AFC99477.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 429

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 143/282 (50%), Gaps = 28/282 (9%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           DG       P +V  L    +V+ + GG H LA+D  G  +AWG +  GQ G   +    
Sbjct: 115 DGTYNNSATPVKVKGLEG--VVEVSAGGVHSLALDKNGTVWAWGADWDGQLGNGIKVPST 172

Query: 116 T-GRIL-----RRDI--VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI 167
           + GR++      RD    +P R      V+QVAAG   S VL  +G VW WG+      +
Sbjct: 173 SHGRVMPPGMSERDFHSNVPIRVNVTG-VKQVAAGNDFSAVLKEDGTVWAWGE-----GL 226

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           K    P R+  L  +K+IA G +  LAL +DG LW +    + +  + D+ P  +   V+
Sbjct: 227 KMPPYPERIDCLSNIKMIAAG-YSLLALADDGTLWEY----WVEWTSWDSLPEVRLTRVE 281

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+   +V I++GG HS AL  +G V+ WG  E G LG G     ++  P +V  LA  +
Sbjct: 282 GLA--NVVSISSGGSHSMALLANGTVWAWGYNEDGELGDGSTSAYTRSTPARVQGLA--N 337

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR---KVTT 326
           I  +S G  +S+A+  DG ++++GR   G++  G    K+TT
Sbjct: 338 ITSISAGWRNSIAVQDDGTVWAWGRNLEGQIDPGSTETKITT 379



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 105/215 (48%), Gaps = 31/215 (14%)

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP---------PGDIKQISVPV 174
           +VI   CA    V   + G  H V L  +G VW WG P+P          G+    S+ +
Sbjct: 17  VVIVPVCASSSRVVSASFGMFHGVALKDDGTVWAWGAPYPGAANFSYYGVGEKDDESILI 76

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           RV GL+ V +++       AL ++G +WAWG NE GQLG G     + P+ V+GL G  +
Sbjct: 77  RVDGLDNVTMVSTET-ACFALDKNGTVWAWGFNEEGQLGDGTYNNSATPVKVKGLEG--V 133

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM----------------VPQ 278
           V+++AGG HS AL  +G V+ WG    G+LG G    S+                  VP 
Sbjct: 134 VEVSAGGVHSLALDKNGTVWAWGADWDGQLGNGIKVPSTSHGRVMPPGMSERDFHSNVPI 193

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           +VN+     + QV+ G   S  L  DG ++++G G
Sbjct: 194 RVNVTG---VKQVAAGNDFSAVLKEDGTVWAWGEG 225



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 125/300 (41%), Gaps = 73/300 (24%)

Query: 81  IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE---RKDDTGRILRRDIVIPQRCAPKLIVR 137
            G +H +A+ D G  +AWG    G           KDD   ++R D          L   
Sbjct: 34  FGMFHGVALKDDGTVWAWGAPYPGAANFSYYGVGEKDDESILIRVD---------GLDNV 84

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
            + +  T    L + G VW WG         G     + PV+V+GLE V  ++ G  H+L
Sbjct: 85  TMVSTETACFALDKNGTVWAWGFNEEGQLGDGTYNNSATPVKVKGLEGVVEVSAGGVHSL 144

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQP-----RSQP-----------IPVQ-GLSGLTLVD 236
           AL ++G +WAWG +  GQLG G   P     R  P           +P++  ++G+    
Sbjct: 145 ALDKNGTVWAWGADWDGQLGNGIKVPSTSHGRVMPPGMSERDFHSNVPIRVNVTGVK--Q 202

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHG-----RLGFGDNDKSSKMVPQKVNLLAGED---- 287
           +AAG   S  L +DG V+ WG G        R+   D   + KM+    +LLA  D    
Sbjct: 203 VAAGNDFSAVLKEDGTVWAWGEGLKMPPYPERI---DCLSNIKMIAAGYSLLALADDGTL 259

Query: 288 --------------------------IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
                                     +V +S GG+HS+AL  +G ++++G  + G LG G
Sbjct: 260 WEYWVEWTSWDSLPEVRLTRVEGLANVVSISSGGSHSMALLANGTVWAWGYNEDGELGDG 319


>gi|410957218|ref|XP_003985228.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 [Felis catus]
          Length = 932

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 107/207 (51%), Gaps = 31/207 (14%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 7   VAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRV 66

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D +      P  V LL  +
Sbjct: 67  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRES--PCHVKLLRTQ 124

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGV 346
            +V +SCG  H+  LT+ G +F+FG G  G+LG+                    +  D V
Sbjct: 125 KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDEV 165

Query: 347 DRRWIAKL-------VACGGRHTLAIV 366
           + R + +L       +ACG +HTLA V
Sbjct: 166 NPRRVLELMGSEVTQIACGRQHTLAFV 192



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 17/217 (7%)

Query: 131 APKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQG 178
            P+LI       + QV+ G  H + L  +G  +TWG     Q     +    + P RV+ 
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRS 68

Query: 179 LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V+ L    +V 
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVY 128

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P++V  L G ++ Q++CG  
Sbjct: 129 ISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQ 186

Query: 297 HSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           H++A     G I++FG G  G+LG G       P  V
Sbjct: 187 HTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 223



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E            
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS------ 62

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D +    P  V+
Sbjct: 63  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVK 119

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G    GQLG         P  V  L G  + 
Sbjct: 120 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 212



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 13/145 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRS 68

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  + QV+ GG HS AL+  G +F +G  + G+LG    ++  +  E P ++   R  
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLG----LSDEEDRESPCHVKLLRTQ 124

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                       ++CG  HT  + +
Sbjct: 125 K--------VVYISCGEEHTAVLTK 141



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 96/226 (42%), Gaps = 40/226 (17%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT------------ENIPSQ-----VNALSN 73
           +++ L    +  V  G+ + LA+  DG+  T            +  PSQ     V +L  
Sbjct: 12  LIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEG 71

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG---RILRRDIVIPQRC 130
             + Q A GG H  A+   G  + WG N  GQ G   E   ++    ++LR   V+   C
Sbjct: 72  IPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISC 131

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVK 183
                      G  H+ VLT+ G V+T+G     G +   S+     P RV  L   +V 
Sbjct: 132 -----------GEEHTAVLTKSGGVFTFG-AGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 184 LIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 225



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           + S  VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++  +    
Sbjct: 4   EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS- 62

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 P    + +G+    +A+ VA GG H+ A+
Sbjct: 63  ------PQRVRSLEGIP---LAQ-VAAGGAHSFAL 87



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + E+RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 92  AVFGWGMNNAGQLGLSDEEDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 151

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 152 SCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 210


>gi|408501212|ref|YP_006865131.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
 gi|408466036|gb|AFU71565.1| RCC1-like protein [Bifidobacterium asteroides PRL2011]
          Length = 1186

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 145/306 (47%), Gaps = 36/306 (11%)

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
             LAV   G AYAWG N YGQ G+       T   + + +  P          QV+ G  
Sbjct: 688 FSLAVGSDGNAYAWGYNRYGQLGDGTTTTRTTPVKVSKPVGAPT----DFTYVQVSGGYY 743

Query: 145 HSVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRV----------QGLEQVKLI 185
           HS+ +  +G+ + WG+     D  Q+         +VPVRV          +GL+ ++ +
Sbjct: 744 HSLAIGSDGYAYAWGR----SDSGQLGNNTTTAYSTVPVRVRDPSSPTDKNKGLKAIQ-V 798

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI----PVQGLSGLTLVDIAAGG 241
           + G  H+LA+  DG  +AWG+N  GQLG G    R+ P+    P    +  T V ++ G 
Sbjct: 799 SAGGDHSLAVGSDGNAYAWGSNGSGQLGDGTYTTRTTPVKVSKPADAPTNFTYVQVSGGY 858

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV--QVSCGGTHSV 299
             S A+  DG  YG G   +G+LG G +   + +V       A  D +  Q+S G  HS+
Sbjct: 859 NDSLAIDSDGNAYGCGDNTYGKLGDGTSTSRAMLVKVSKPADAPTDFIYMQISAGAGHSL 918

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+  DG+ +++GR D G+LG       G    VP+ +  P +  D  ++   A  V+ GG
Sbjct: 919 AVGSDGYAYAWGRSDSGQLG-NNTSGFGAHSSVPVRVRDPSSPTD-ENKGLKATQVSGGG 976

Query: 360 RHTLAI 365
            H+LA+
Sbjct: 977 DHSLAV 982



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 150/325 (46%), Gaps = 34/325 (10%)

Query: 68   VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIP 127
            V A ++   VQ + G +H LA+   G AYAWG ++ GQ G        T  +  RD   P
Sbjct: 727  VGAPTDFTYVQVSGGYYHSLAIGSDGYAYAWGRSDSGQLGNNTTTAYSTVPVRVRDPSSP 786

Query: 128  QRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ----GL 179
                  L   QV+AGG HS+ +  +G+ + WG         G     + PV+V       
Sbjct: 787  TDKNKGLKAIQVSAGGDHSLAVGSDGNAYAWGSNGSGQLGDGTYTTRTTPVKVSKPADAP 846

Query: 180  EQVKLIAVGAFHN--LALQEDGALWAWGNNEYGQLGTGDTQPRSQPI----PVQGLSGLT 233
                 + V   +N  LA+  DG  +  G+N YG+LG G +  R+  +    P    +   
Sbjct: 847  TNFTYVQVSGGYNDSLAIDSDGNAYGCGDNTYGKLGDGTSTSRAMLVKVSKPADAPTDFI 906

Query: 234  LVDIAAGGWHSTALTDDGEVYGWGRGEHGRL-----GFGDNDKSSKMVPQKVNLLA---- 284
             + I+AG  HS A+  DG  Y WGR + G+L     GFG    +   VP +V   +    
Sbjct: 907  YMQISAGAGHSLAVGSDGYAYAWGRSDSGQLGNNTSGFG----AHSSVPVRVRDPSSPTD 962

Query: 285  ---GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME-VPINIPAPR 340
               G    QVS GG HS+A+  DG+++++G  ++G+L  G   T+G     VP+++  P 
Sbjct: 963  ENKGLKATQVSGGGDHSLAVGSDGYVYAWGINNYGQL--GNNTTSGSTANPVPVHVRDPA 1020

Query: 341  NAGDGVDRRWIAKLVACGGRHTLAI 365
            N+ D   +   A  V  G   +LA+
Sbjct: 1021 NSAD-TSKGLQATQVKVGYDFSLAM 1044



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 142/333 (42%), Gaps = 74/333 (22%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCV-VKALEP---------YKVRSVVAGSRNSLAICDDGK 58
            AWG  + GQLG  NN    +  V V+  +P          K   V AG  +SLA+  DG 
Sbjct: 756  AWGRSDSGQLG--NNTTTAYSTVPVRVRDPSSPTDKNKGLKAIQVSAGGDHSLAVGSDGN 813

Query: 59   T----------------KTENIPSQV----NALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
                              T   P +V    +A +N   VQ + G    LA+D  G AY  
Sbjct: 814  AYAWGSNGSGQLGDGTYTTRTTPVKVSKPADAPTNFTYVQVSGGYNDSLAIDSDGNAYGC 873

Query: 99   GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
            G N YG+ G+       T R +   +  P       I  Q++AG  HS+ +  +G+ + W
Sbjct: 874  GDNTYGKLGD----GTSTSRAMLVKVSKPADAPTDFIYMQISAGAGHSLAVGSDGYAYAW 929

Query: 159  GQPWPPGDIKQI-----------SVPVRV----------QGLEQVKLIAVGAFHNLALQE 197
            G+     D  Q+           SVPVRV          +GL+  + ++ G  H+LA+  
Sbjct: 930  GR----SDSGQLGNNTSGFGAHSSVPVRVRDPSSPTDENKGLKATQ-VSGGGDHSLAVGS 984

Query: 198  DGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQ---------GLSGLTLVDIAAGGWHSTAL 247
            DG ++AWG N YGQLG   T    + P+PV             GL    +  G   S A+
Sbjct: 985  DGYVYAWGINNYGQLGNNTTSGSTANPVPVHVRDPANSADTSKGLQATQVKVGYDFSLAM 1044

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
              DG  Y WG   +G+L  G++  ++K+VP  V
Sbjct: 1045 GSDGNAYAWGANGNGQL--GNDTTNTKLVPVPV 1075



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 153/387 (39%), Gaps = 66/387 (17%)

Query: 9    AWGSGEDGQLGIGNNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDG------- 57
            AWG    GQLG G    R     V     A   +    V  G  +SLAI  DG       
Sbjct: 700  AWGYNRYGQLGDGTTTTRTTPVKVSKPVGAPTDFTYVQVSGGYYHSLAIGSDGYAYAWGR 759

Query: 58   ----------KTKTENIPSQVNALSNT-------KIVQAAIGGWHCLAVDDQGRAYAWGG 100
                       T    +P +V   S+        K +Q + GG H LAV   G AYAWG 
Sbjct: 760  SDSGQLGNNTTTAYSTVPVRVRDPSSPTDKNKGLKAIQVSAGGDHSLAVGSDGNAYAWGS 819

Query: 101  NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW---- 156
            N  GQ G+       T R     +  P          QV+ G   S+ +  +G+ +    
Sbjct: 820  NGSGQLGDGTY----TTRTTPVKVSKPADAPTNFTYVQVSGGYNDSLAIDSDGNAYGCGD 875

Query: 157  -TWGQPWPPGD--------IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
             T+G+    GD        + ++S P           I+ GA H+LA+  DG  +AWG +
Sbjct: 876  NTYGKL---GDGTSTSRAMLVKVSKPADAPTDFIYMQISAGAGHSLAVGSDGYAYAWGRS 932

Query: 208  EYGQLGTGDT----------QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            + GQLG   +          + R    P     GL    ++ GG HS A+  DG VY WG
Sbjct: 933  DSGQLGNNTSGFGAHSSVPVRVRDPSSPTDENKGLKATQVSGGGDHSLAVGSDGYVYAWG 992

Query: 258  RGEHGRLGFGDNDKSS-KMVPQKVNLLA-------GEDIVQVSCGGTHSVALTRDGHIFS 309
               +G+LG      S+   VP  V   A       G    QV  G   S+A+  DG+ ++
Sbjct: 993  INNYGQLGNNTTSGSTANPVPVHVRDPANSADTSKGLQATQVKVGYDFSLAMGSDGNAYA 1052

Query: 310  FGRGDHGRLGYGRKVTTGQPMEVPINI 336
            +G   +G+LG     T   P+ V  N+
Sbjct: 1053 WGANGNGQLGNDTTNTKLVPVPVVFNL 1079


>gi|402869930|ref|XP_003898996.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Papio anubis]
          Length = 932

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 109/208 (52%), Gaps = 33/208 (15%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 7   VAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRV 66

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAG 285
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  
Sbjct: 67  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRT 123

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +V +SCG  H+  LT+ G +F+FG G  G+LG+                    +  D 
Sbjct: 124 QKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDE 164

Query: 346 VDRRWIAKL-------VACGGRHTLAIV 366
           V+ R + +L       +ACG +HTLA V
Sbjct: 165 VNPRRVLELMGSEVTQIACGRQHTLAFV 192



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 17/217 (7%)

Query: 131 APKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQG 178
            P+LI       + QV+ G  H + L  +G  +TWG     Q     +    + P RV+ 
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRS 68

Query: 179 LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V+ L    +V 
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVY 128

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P++V  L G ++ Q++CG  
Sbjct: 129 ISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQ 186

Query: 297 HSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           H++A     G I++FG G  G+LG G       P  V
Sbjct: 187 HTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 223



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 93/213 (43%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E            
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS------ 62

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D K    P  V+
Sbjct: 63  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK 119

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G    GQLG         P  V  L G  + 
Sbjct: 120 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 212



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRS 68

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  + QV+ GG HS AL+  G +F +G  + G+LG   +     P  V +        
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL-------- 120

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                R      ++CG  HT  + +
Sbjct: 121 ----LRTQKVVYISCGEEHTAVLTK 141



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 40/226 (17%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT------------ENIPSQ-----VNALSN 73
           +++ L    +  V  G+ + LA+  DG+  T            +  PSQ     V +L  
Sbjct: 12  LIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEG 71

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG---RILRRDIVIPQRC 130
             + Q A GG H  A+   G  + WG N  GQ G   E+  ++    ++LR   V+   C
Sbjct: 72  IPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISC 131

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVK 183
                      G  H+ VLT+ G V+T+G     G +   S+     P RV  L   +V 
Sbjct: 132 -----------GEEHTAVLTKSGGVFTFG-AGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 184 LIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 225



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           + S  VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++  +    
Sbjct: 4   EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS- 62

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 P    + +G+    +A+ VA GG H+ A+
Sbjct: 63  ------PQRVRSLEGIP---LAQ-VAAGGAHSFAL 87



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 92  AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 151

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 152 SCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 210


>gi|332233512|ref|XP_003265946.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Nomascus leucogenys]
          Length = 932

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 109/208 (52%), Gaps = 33/208 (15%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 7   VAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRV 66

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAG 285
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  
Sbjct: 67  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRT 123

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +V +SCG  H+  LT+ G +F+FG G  G+LG+                    +  D 
Sbjct: 124 QKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDE 164

Query: 346 VDRRWIAKL-------VACGGRHTLAIV 366
           V+ R + +L       +ACG +HTLA V
Sbjct: 165 VNPRRVLELMGSEVTQIACGRQHTLAFV 192



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 17/217 (7%)

Query: 131 APKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQG 178
            P+LI       + QV+ G  H + L  +G  +TWG     Q     +    + P RV+ 
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRS 68

Query: 179 LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V+ L    +V 
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVY 128

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P++V  L G ++ Q++CG  
Sbjct: 129 ISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQ 186

Query: 297 HSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           H++A     G I++FG G  G+LG G       P  V
Sbjct: 187 HTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 223



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 93/213 (43%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E            
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS------ 62

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D K    P  V+
Sbjct: 63  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK 119

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G    GQLG         P  V  L G  + 
Sbjct: 120 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 212



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRS 68

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  + QV+ GG HS AL+  G +F +G  + G+LG   +     P  V +        
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL-------- 120

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                R      ++CG  HT  + +
Sbjct: 121 ----LRTQKVVYISCGEEHTAVLTK 141



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 40/226 (17%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT------------ENIPSQ-----VNALSN 73
           +++ L    +  V  G+ + LA+  DG+  T            +  PSQ     V +L  
Sbjct: 12  LIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEG 71

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG---RILRRDIVIPQRC 130
             + Q A GG H  A+   G  + WG N  GQ G   E+  ++    ++LR   V+   C
Sbjct: 72  IPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISC 131

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVK 183
                      G  H+ VLT+ G V+T+G     G +   S+     P RV  L   +V 
Sbjct: 132 -----------GEEHTAVLTKSGGVFTFG-AGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 184 LIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 225



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           + S  VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++  +    
Sbjct: 4   EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS- 62

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 P    + +G+    +A+ VA GG H+ A+
Sbjct: 63  ------PQRVRSLEGIP---LAQ-VAAGGAHSFAL 87



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 92  AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 151

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 152 SCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 210


>gi|50955670|ref|YP_062958.1| hypothetical protein Lxx21640 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50952152|gb|AAT89853.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 596

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 137/317 (43%), Gaps = 32/317 (10%)

Query: 42  SVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTKIVQAAIGGWH 85
           +V AGS ++ A+ DDG                 T   + P +V   +  K    + G   
Sbjct: 54  AVSAGSLSAYALGDDGNVYAWGDNEYGQLGTGDTVNAHTPVKVMLPAGVKFTALSAGSLS 113

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
             A+ D G AYAWG NEYGQ G        TG  +     +       +    +++GG  
Sbjct: 114 AYALGDDGHAYAWGDNEYGQLG--------TGDTVNAHTPVKVMLPAGVKFTALSSGGPS 165

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDG 199
           +  +  +G  + WG                VPV V     V    +  G+    AL  DG
Sbjct: 166 AYAVGNDGKTYAWGFNGYGQLGTDTTADAHVPVAVAVPAGVSFTTLSGGSLSAYALGNDG 225

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
             +AWG N YGQLGT  T     P+ V   +G++   ++AG   + AL DD + Y WG  
Sbjct: 226 KTYAWGFNGYGQLGTDTTADAHVPVAVAVPAGVSFTAVSAGVSSAYALGDDRKTYAWGDN 285

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           E+G+LG GD   ++   P  V + AGE  V VS G     A  ++G  +++G  D+G+LG
Sbjct: 286 EYGQLGRGDT--ANAHAPVAVTVSAGETFVSVSGGAGSVYARGQNGDTYAWGDNDYGQLG 343

Query: 320 YGRKVTTGQPMEVPINI 336
            G       P+EV   +
Sbjct: 344 RGDTANAHTPIEVAAGV 360



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 133/324 (41%), Gaps = 38/324 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
           ++ AWG  E GQLG G+         V      K  ++ AGS ++ A+ DDG        
Sbjct: 70  NVYAWGDNEYGQLGTGDTVNAHTPVKVMLPAGVKFTALSAGSLSAYALGDDGHAYAWGDN 129

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T   + P +V   +  K    + GG    AV + G+ YAWG N YGQ G +
Sbjct: 130 EYGQLGTGDTVNAHTPVKVMLPAGVKFTALSSGGPSAYAVGNDGKTYAWGFNGYGQLGTD 189

Query: 110 PERKDDTGRILRRDIVIPQRCA-PKLIVRQVAAGGTHSV-VLTREGHVWTWGQ----PWP 163
                        D  +P   A P  +     +GG+ S   L  +G  + WG        
Sbjct: 190 ----------TTADAHVPVAVAVPAGVSFTTLSGGSLSAYALGNDGKTYAWGFNGYGQLG 239

Query: 164 PGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                   VPV V     V   AV  G     AL +D   +AWG+NEYGQLG GDT    
Sbjct: 240 TDTTADAHVPVAVAVPAGVSFTAVSAGVSSAYALGDDRKTYAWGDNEYGQLGRGDTANAH 299

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P+ V   +G T V ++ G     A   +G+ Y WG  ++G+LG GD   +       + 
Sbjct: 300 APVAVTVSAGETFVSVSGGAGSVYARGQNGDTYAWGDNDYGQLGRGDTANAHT----PIE 355

Query: 282 LLAGEDIVQVSCGGTHSVALTRDG 305
           + AG ++  V  G     A++  G
Sbjct: 356 VAAGVEVTGVLFGSLPGTAVSSQG 379



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 6/155 (3%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           ++ G+    AL +DG ++AWG+NEYGQLGTGDT     P+ V   +G+    ++AG   +
Sbjct: 55  VSAGSLSAYALGDDGNVYAWGDNEYGQLGTGDTVNAHTPVKVMLPAGVKFTALSAGSLSA 114

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            AL DDG  Y WG  E+G+LG GD   +    P KV L AG     +S GG  + A+  D
Sbjct: 115 YALGDDGHAYAWGDNEYGQLGTGDTVNA--HTPVKVMLPAGVKFTALSSGGPSAYAVGND 172

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           G  +++G   +G+LG      T     VP+ +  P
Sbjct: 173 GKTYAWGFNGYGQLG----TDTTADAHVPVAVAVP 203



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           G+T   ++AG   + AL DDG VY WG  E+G+LG GD   +    P KV L AG     
Sbjct: 49  GVTFTAVSAGSLSAYALGDDGNVYAWGDNEYGQLGTGDTVNA--HTPVKVMLPAGVKFTA 106

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +S G   + AL  DGH +++G  ++G+LG G  V    P++V
Sbjct: 107 LSAGSLSAYALGDDGHAYAWGDNEYGQLGTGDTVNAHTPVKV 148


>gi|158253947|gb|AAI48319.1| HERC2 protein [Homo sapiens]
          Length = 703

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 141/263 (53%), Gaps = 23/263 (8%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            +PS    LS   +VQ A G     AV  +G+ YA        CGE    +   G I   
Sbjct: 448 KVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYA--------CGEATNGRLGLG-ISSG 498

Query: 123 DIVIPQRCA--PKLIVRQVA--AGGTHSVVLTREGHVWTWGQ--PWPPGDIKQISV--PV 174
            + IP++       +V++VA  +GG H+  LT +G V++WG+      G   +++   P 
Sbjct: 499 TVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGKLGHFSRMNCDKPR 558

Query: 175 RVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
            ++ L+  +++ IA G+ H+ AL   G L+ WG  EYG+LG GD   + +P  V+ L G 
Sbjct: 559 LIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGH 618

Query: 233 TLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
            ++ +A G     + ALTD+G V+ WG G+ G+LG G ++  +  +PQ +  L G+ + Q
Sbjct: 619 RVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGSEGCN--IPQNIERLNGQGVCQ 676

Query: 291 VSCGGTHSVALTRDGHIFSFGRG 313
           + CG   S+ALT+ G ++++G+G
Sbjct: 677 IECGAQFSLALTKSGVVWTWGKG 699



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 39/288 (13%)

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTR 151
           + + WG N+          KD  G +    I +P        L V QVA G      +T 
Sbjct: 427 KVFVWGLND----------KDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTV 476

Query: 152 EGHVWTWGQPWPPGDIK------QISVPVRVQGLEQ--VKLIAV--GAFHNLALQEDGAL 201
           EG V+  G+    G +        + +P ++  L    VK +AV  G  H  AL  DG +
Sbjct: 477 EGKVYACGEA-TNGRLGLGISSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKV 535

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           ++WG  + G+LG        +P  ++ L    + DIA G  HS ALT  GE+Y WG GE+
Sbjct: 536 FSWGEGDDGKLGHFSRMNCDKPRLIEALKTKRIRDIACGSSHSAALTSSGELYTWGLGEY 595

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHIFSFGRGDHGRLG 319
           GRLG GDN  ++++ P+ V +L G  ++QV+CG     ++ALT +G +FS+G GD G+LG
Sbjct: 596 GRLGHGDN--TTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLG 653

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G      +   +P NI   R  G GV +      + CG + +LA+ +
Sbjct: 654 RG----GSEGCNIPQNI--ERLNGQGVCQ------IECGAQFSLALTK 689



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 35/282 (12%)

Query: 5   TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           T +  WG  +  QLG     + +     + L    V  V  GS++  A+  +GK      
Sbjct: 426 TKVFVWGLNDKDQLGGLKGSKIKVPSFSETLSALNVVQVAGGSKSLFAVTVEGKVYACGE 485

Query: 59  -----------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQ 105
                      + T  IP Q+ ALS+  + + A+  GG H  A+   G+ ++WG  + G+
Sbjct: 486 ATNGRLGLGISSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKVFSWGEGDDGK 545

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
            G       D  R++  + +  +R      +R +A G +HS  LT  G ++TWG      
Sbjct: 546 LGHFSRMNCDKPRLI--EALKTKR------IRDIACGSSHSAALTSSGELYTWGLGEYGR 597

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDT 217
              GD      P  V+ L   ++I V         LAL ++G +++WG+ ++G+LG G +
Sbjct: 598 LGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDAQTLALTDEGLVFSWGDGDFGKLGRGGS 657

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           +  + P  ++ L+G  +  I  G   S ALT  G V+ WG+G
Sbjct: 658 EGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKG 699



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 42/160 (26%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  +  WG GE G+LG G+N  +    +VK L  ++V  V  GSR++          
Sbjct: 581 LTSSGELYTWGLGEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGSRDA---------- 630

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                     LA+ D+G  ++WG  ++G+ G    R    G  +
Sbjct: 631 ------------------------QTLALTDEGLVFSWGDGDFGKLG----RGGSEGCNI 662

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            ++I   +R   + +  Q+  G   S+ LT+ G VWTWG+
Sbjct: 663 PQNI---ERLNGQGVC-QIECGAQFSLALTKSGVVWTWGK 698


>gi|410110896|ref|NP_001258531.1| probable E3 ubiquitin-protein ligase HERC3 isoform 2 [Homo sapiens]
 gi|397480081|ref|XP_003811324.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Pan paniscus]
 gi|426344935|ref|XP_004039159.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform 2
           [Gorilla gorilla gorilla]
 gi|194382994|dbj|BAG59053.1| unnamed protein product [Homo sapiens]
          Length = 932

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 109/208 (52%), Gaps = 33/208 (15%)

Query: 170 ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPV 226
           ++VP  +Q L Q  ++ V  G +H LAL  DG  + WG N +GQLG G   P ++ P  V
Sbjct: 7   VAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRV 66

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAG 285
           + L G+ L  +AAGG HS AL+  G V+GWG    G+LG  D  D+ S   P  V LL  
Sbjct: 67  RSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRES---PCHVKLLRT 123

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           + +V +SCG  H+  LT+ G +F+FG G  G+LG+                    +  D 
Sbjct: 124 QKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHD-------------------SMNDE 164

Query: 346 VDRRWIAKL-------VACGGRHTLAIV 366
           V+ R + +L       +ACG +HTLA V
Sbjct: 165 VNPRRVLELMGSEVTQIACGRQHTLAFV 192



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 17/217 (7%)

Query: 131 APKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQG 178
            P+LI       + QV+ G  H + L  +G  +TWG     Q     +    + P RV+ 
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRS 68

Query: 179 LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           LE + L  +A G  H+ AL   GA++ WG N  GQLG  D + R  P  V+ L    +V 
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVY 128

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           I+ G  H+  LT  G V+ +G G  G+L  G +  + ++ P++V  L G ++ Q++CG  
Sbjct: 129 ISCGEEHTAVLTKSGGVFTFGAGSCGQL--GHDSMNDEVNPRRVLELMGSEVTQIACGRQ 186

Query: 297 HSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           H++A     G I++FG G  G+LG G       P  V
Sbjct: 187 HTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPV 223



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 93/213 (43%), Gaps = 18/213 (8%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ G   E            
Sbjct: 9   VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS------ 62

Query: 124 IVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
              PQR      + + QVAAGG HS  L+  G V+ WG          D K    P  V+
Sbjct: 63  ---PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVK 119

Query: 178 GL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
            L  ++V  I+ G  H   L + G ++ +G    GQLG         P  V  L G  + 
Sbjct: 120 LLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 236 DIAAGGWHSTALT-DDGEVYGWGRGEHGRLGFG 267
            IA G  H+ A     G +Y +G G  G+LG G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTG 212



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 13/145 (8%)

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  +Q L+  T++ ++ G WH  AL  DG+ + WG+  HG+LG G  +  S+  PQ+V  
Sbjct: 10  PRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLG-KEFPSQASPQRVRS 68

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
           L G  + QV+ GG HS AL+  G +F +G  + G+LG   +     P  V +        
Sbjct: 69  LEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKL-------- 120

Query: 343 GDGVDRRWIAKLVACGGRHTLAIVE 367
                R      ++CG  HT  + +
Sbjct: 121 ----LRTQKVVYISCGEEHTAVLTK 141



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 40/226 (17%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT------------ENIPSQ-----VNALSN 73
           +++ L    +  V  G+ + LA+  DG+  T            +  PSQ     V +L  
Sbjct: 12  LIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEG 71

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG---RILRRDIVIPQRC 130
             + Q A GG H  A+   G  + WG N  GQ G   E+  ++    ++LR   V+   C
Sbjct: 72  IPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISC 131

Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--EQVK 183
                      G  H+ VLT+ G V+T+G     G +   S+     P RV  L   +V 
Sbjct: 132 -----------GEEHTAVLTKSGGVFTFG-AGSCGQLGHDSMNDEVNPRRVLELMGSEVT 179

Query: 184 LIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            IA G  H LA     G ++A+G    GQLGTG T     P PV+G
Sbjct: 180 QIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKG 225



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           + S  VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++  +    
Sbjct: 4   EDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQAS- 62

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                 P    + +G+    +A+ VA GG H+ A+
Sbjct: 63  ------PQRVRSLEGIP---LAQ-VAAGGAHSFAL 87



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 17/119 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           ++  WG    GQLG+ + ++RE  C VK L   KV  +  G  ++  +   G   T    
Sbjct: 92  AVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAG 151

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEYGQCG 107
                       E  P +V  L  +++ Q A G  H LA V   G  YA+G    GQ G
Sbjct: 152 SCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLG 210


>gi|74140658|dbj|BAB30628.3| unnamed protein product [Mus musculus]
          Length = 590

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 172 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 228

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 229 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 287

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 288 CGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 345

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 346 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 395

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 396 GCHMLVF 402



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-TLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 196

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 197 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 252

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 253 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 298



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 149/328 (45%), Gaps = 40/328 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 51  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 106

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 107 --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 158

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 159 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 216

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 217 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 276

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 277 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 327

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               + +  + I   ++CG  HT  + E
Sbjct: 328 ----ERIKDQKICH-ISCGENHTALMTE 350


>gi|432863735|ref|XP_004070156.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like [Oryzias
           latipes]
          Length = 1080

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 14/213 (6%)

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-------KQISVPVRVQGLEQVKLIA 186
           + V QVA G  H+VVL+++G V+TWGQ    G +         IS P  V+ L  + ++ 
Sbjct: 122 ITVTQVACGSQHTVVLSKDGQVYTWGQN-SRGQLGLGKEGCSSISSPQCVRSLSSMPVVQ 180

Query: 187 VGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           V A   H+ AL   G+++ WG N+ GQLG GDT  R  P  V  L+    V  A G  H+
Sbjct: 181 VSAGGDHSFALSVSGSVFGWGRNDCGQLGLGDTTDRETPTLVHYLNMKKTVFAACGKDHT 240

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
             LT DG V+ +G G +G+L  G N   + + P+ V  L G  + +++CG  H++ LT  
Sbjct: 241 AVLTMDGTVFTFGSGHYGQL--GHNSFRNALCPRLVAELWGAKVTKIACGRYHTLVLTDH 298

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             ++SFG  +HG+LG   +     P+  P+ +P
Sbjct: 299 MKVYSFGCNEHGQLGPREETHPCVPL--PVQLP 329



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 110/248 (44%), Gaps = 19/248 (7%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  + ALS   + Q A G  H + +   G+ Y WG N  GQ G         G+     I
Sbjct: 113 PRSLEALSGITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLG--------LGKEGCSSI 164

Query: 125 VIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
             PQ  R    + V QV+AGG HS  L+  G V+ WG+        GD      P  V  
Sbjct: 165 SSPQCVRSLSSMPVVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLGDTTDRETPTLVHY 224

Query: 179 LEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
           L   K +  A G  H   L  DG ++ +G+  YGQLG    +    P  V  L G  +  
Sbjct: 225 LNMKKTVFAACGKDHTAVLTMDGTVFTFGSGHYGQLGHNSFRNALCPRLVAELWGAKVTK 284

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ-VSCGG 295
           IA G +H+  LTD  +VY +G  EHG+L  G  +++   VP  V L     I+Q +  GG
Sbjct: 285 IACGRYHTLVLTDHMKVYSFGCNEHGQL--GPREETHPCVPLPVQLPREGPIIQNIFAGG 342

Query: 296 THSVALTR 303
             S A  R
Sbjct: 343 DSSFATCR 350



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 61/104 (58%)

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
            P   P  ++ LSG+T+  +A G  H+  L+ DG+VY WG+   G+LG G    SS   P
Sbjct: 108 HPPFTPRSLEALSGITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGKEGCSSISSP 167

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           Q V  L+   +VQVS GG HS AL+  G +F +GR D G+LG G
Sbjct: 168 QCVRSLSSMPVVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLG 211



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 33/240 (13%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKT------------------ENIPSQVNALSN 73
           ++AL    V  V  GS++++ +  DG+  T                   + P  V +LS+
Sbjct: 116 LEALSGITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGKEGCSSISSPQCVRSLSS 175

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
             +VQ + GG H  A+   G  + WG N+ GQ G      D T R      ++      K
Sbjct: 176 MPVVQVSAGGDHSFALSVSGSVFGWGRNDCGQLG----LGDTTDR--ETPTLVHYLNMKK 229

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAV 187
            +    A G  H+ VLT +G V+T+G            +    P  V  L   +V  IA 
Sbjct: 230 TVF--AACGKDHTAVLTMDGTVFTFGSGHYGQLGHNSFRNALCPRLVAELWGAKVTKIAC 287

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-GLSGLTLVDIAAGGWHSTA 246
           G +H L L +   ++++G NE+GQLG  +      P+PVQ    G  + +I AGG  S A
Sbjct: 288 GRYHTLVLTDHMKVYSFGCNEHGQLGPREETHPCVPLPVQLPREGPIIQNIFAGGDSSFA 347



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 34/192 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ + S+  WG  + GQLG+G+  +RE   +V  L   K      G  ++  +  DG   
Sbjct: 191 LSVSGSVFGWGRNDCGQLGLGDTTDRETPTLVHYLNMKKTVFAACGKDHTAVLTMDGTVF 250

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T                   P  V  L   K+ + A G +H L + D  + Y++G NE+G
Sbjct: 251 TFGSGHYGQLGHNSFRNALCPRLVAELWGAKVTKIACGRYHTLVLTDHMKVYSFGCNEHG 310

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G     +++T   +   + +P R  P  I++ + AGG  S    R           P 
Sbjct: 311 QLGP----REETHPCVPLPVQLP-REGP--IIQNIFAGGDSSFATCR-----------PE 352

Query: 165 GDIKQISVPVRV 176
            D+ ++ V + V
Sbjct: 353 QDVSEVPVEILV 364



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 33/49 (67%)

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
             P+ +  L+G  + QV+CG  H+V L++DG ++++G+   G+LG G++
Sbjct: 111 FTPRSLEALSGITVTQVACGSQHTVVLSKDGQVYTWGQNSRGQLGLGKE 159


>gi|417407323|gb|JAA50277.1| Putative rcc1 and btb domain-containing protein 2, partial
           [Desmodus rotundus]
          Length = 511

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 26/232 (11%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLAL 195
           G H V+ T EG V+TWG         G     SVP  +      +QV  +A G++H+L L
Sbjct: 94  GPHIVLATTEGEVFTWGHNAYNQLGNGTTNHGSVPCHISTNLSNKQVIEVACGSYHSLVL 153

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQG-LSGLTLVDIAAGGWHSTALTDDGE 252
             DG ++AWG N  GQ+G+G T   +QPIP  V G L    +V+IA G   S A+ D GE
Sbjct: 154 TSDGEVFAWGCNNSGQVGSGSTA--NQPIPRRVTGCLQNRVVVNIACGQMCSMAVVDSGE 211

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG   +G+LG G +   S   P ++  L G  + +V+CG  H++ LT DG ++++G 
Sbjct: 212 VYVWGYNGNGQLGLGSSGNHS--TPCRIAALQGIRVQRVACGYAHTLVLTDDGQVYAWGA 269

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             +G+LG G K     P  V             V++  I ++ AC   HT A
Sbjct: 270 NSYGQLGTGNKSNQSYPTPVV------------VEKDRIIEIAACHSTHTSA 309



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 125/257 (48%), Gaps = 18/257 (7%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P ++++LS  KI   + G G H +    +G  + WG N Y Q G            +  +
Sbjct: 75  PRRLDSLSGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYNQLGNGTTNHGSVPCHISTN 134

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL 179
           +   Q       V +VA G  HS+VLT +G V+ WG         G      +P RV G 
Sbjct: 135 LSNKQ-------VIEVACGSYHSLVLTSDGEVFAWGCNNSGQVGSGSTANQPIPRRVTGC 187

Query: 180 EQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q ++   IA G   ++A+ + G ++ WG N  GQLG G +   S P  +  L G+ +  
Sbjct: 188 LQNRVVVNIACGQMCSMAVVDSGEVYVWGYNGNGQLGLGSSGNHSTPCRIAALQGIRVQR 247

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +A G  H+  LTDDG+VY WG   +G+LG G  +KS++  P  V +     I   +C  T
Sbjct: 248 VACGYAHTLVLTDDGQVYAWGANSYGQLGTG--NKSNQSYPTPVVVEKDRIIEIAACHST 305

Query: 297 H-SVALTRDGHIFSFGR 312
           H S A T+ GH++ +G+
Sbjct: 306 HTSAAKTQGGHVYMWGQ 322



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 18/208 (8%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +     +Q + Q  +        L +  +  ++  G N  G LG GD Q   
Sbjct: 17  WP---IFSLCSEEELQLIRQACVFGSAGNEVLYMTVNDEIFVLGTNCCGCLGLGDIQSTI 73

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  LSG  +  ++ G G H    T +GEV+ WG   + +LG G  +  S  VP  +
Sbjct: 74  EPRRLDSLSGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYNQLGNGTTNHGS--VPCHI 131

Query: 281 NL-LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +  L+ + +++V+CG  HS+ LT DG +F++G  + G++G G             N P P
Sbjct: 132 STNLSNKQVIEVACGSYHSLVLTSDGEVFAWGCNNSGQVGSGSTA----------NQPIP 181

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           R     +  R +   +ACG   ++A+V+
Sbjct: 182 RRVTGCLQNRVVVN-IACGQMCSMAVVD 208



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 26/178 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           + S   + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D G+ 
Sbjct: 153 LTSDGEVFAWGCNNSGQVGSGSTANQPIPRRVTGCLQNRVVVNIACGQMCSMAVVDSGEV 212

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                              + P ++ AL   ++ + A G  H L + D G+ YAWG N Y
Sbjct: 213 YVWGYNGNGQLGLGSSGNHSTPCRIAALQGIRVQRVACGYAHTLVLTDDGQVYAWGANSY 272

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG    +    P       I+   A   TH S   T+ GHV+ WGQ
Sbjct: 273 GQLG--------TGNKSNQSYPTPVVVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQ 322


>gi|295789059|ref|NP_001171423.1| X-linked retinitis pigmentosa GTPase regulator isoform 4 [Mus
           musculus]
 gi|74223915|dbj|BAE23845.1| unnamed protein product [Mus musculus]
          Length = 651

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 21  PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 76

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 77  VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 133

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 134 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 192

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 193 CGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 250

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 251 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 300

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 301 GCHMLVF 307



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 19/213 (8%)

Query: 158 WGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
           WGQ    G    I  P  ++ L  E+VKL A G  H L   + G ++A G N  GQLG G
Sbjct: 7   WGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLGLG 65

Query: 216 DTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
           DT  R     +   +   T+  ++AG   S ALT+DG+++ WG    G++G    DKS+ 
Sbjct: 66  DTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGL--EDKSNV 123

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +P +V +  G+ I  +SCG  HS  +T DG +++FG  ++G+LG         P E+ +
Sbjct: 124 CIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGL--------PNELLM 173

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 174 NHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 203



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 130/304 (42%), Gaps = 56/304 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDGKTKTENIP 65
           + A G   +GQLG+G+ ++R+    +    P   ++ + AG+  S A+ +DGK       
Sbjct: 51  VYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGK------- 103

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
                                         + WG N  GQ G E           + ++ 
Sbjct: 104 -----------------------------LFMWGDNSEGQIGLED----------KSNVC 124

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGL 179
           IP        +  ++ G  HS  +T +G ++T+G+P       P   +     P RV G+
Sbjct: 125 IPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGI 184

Query: 180 -EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRSQPIPVQGLSGLTLVDI 237
            E+V  +A G  H + L E   ++A+G  ++GQLG G      S+P  ++ +    +  I
Sbjct: 185 PERVIQVACGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSEPKIIERIKDQKICHI 243

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           + G  H+  +T+ G +Y +G G HG+LG G  + +++  P   +      +  ++CGG H
Sbjct: 244 SCGENHTALMTELGLLYTFGDGRHGKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCH 303

Query: 298 SVAL 301
            +  
Sbjct: 304 MLVF 307


>gi|159488564|ref|XP_001702277.1| hypothetical protein CHLREDRAFT_122886 [Chlamydomonas reinhardtii]
 gi|158271254|gb|EDO97078.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 376

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 171/370 (46%), Gaps = 56/370 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WG GEDGQLG G  ++      + AL    V +VV G+  ++A+             
Sbjct: 31  VASWGRGEDGQLGHGQADQCTSPTCIAALTDAGVDAVVCGAEYTVAV------------- 77

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
                                    +G+ Y+WG  ++G+ G       + G     D+ +
Sbjct: 78  ----------------------ASSRGQIYSWGWGDFGRLGH-----GECG-----DVFV 105

Query: 127 PQRCA--PKLIVRQVAAGGTHSVVLTR-EGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           P+  A      V +VA G TH++V+T+ +G ++T+G+        G       P  V  L
Sbjct: 106 PRPIAFFSGRPVARVACGDTHTLVVTQGDGALYTFGRNQNGQLGLGHTNDCLSPQLVTAL 165

Query: 180 --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
             E+V  +A G+ H+LA  E G +++WG   YG LG GD+Q R  P  V GL G+T+  +
Sbjct: 166 QGERVSSVACGSEHSLAATEAGTVFSWGWGRYGNLGDGDSQDRYTPTRVVGLDGVTVTSV 225

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
             G  HS  +TD+G V+ +G  ++G+LG GD+   ++  P  V  L    +  V+ G  H
Sbjct: 226 VCGWRHSAVVTDEGRVFTFGWSKYGQLGHGDHVDHTR--PCLVAGLQHCRVSTVAGGWRH 283

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           ++A   +G+++++G    G+LG G       P  V     A      G        L+AC
Sbjct: 284 TMAADSEGNLYAWGWNKFGQLGLGDSEDRAAPTPVAGFGLAGGGVEAGAATPRRVALLAC 343

Query: 358 GGRHTLAIVE 367
           G RHT+A+ E
Sbjct: 344 GWRHTVAVTE 353



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 134/304 (44%), Gaps = 49/304 (16%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD----- 56
           +S   I +WG G+ G+LG G   +      +       V  V  G  ++L +        
Sbjct: 79  SSRGQIYSWGWGDFGRLGHGECGDVFVPRPIAFFSGRPVARVACGDTHTLVVTQGDGALY 138

Query: 57  ------------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                       G T     P  V AL   ++   A G  H LA  + G  ++WG   YG
Sbjct: 139 TFGRNQNGQLGLGHTNDCLSPQLVTALQGERVSSVACGSEHSLAATEAGTVFSWGWGRYG 198

Query: 105 QCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
             G+ + + +    R++  D V          V  V  G  HS V+T EG V+T+G  W 
Sbjct: 199 NLGDGDSQDRYTPTRVVGLDGVT---------VTSVVCGWRHSAVVTDEGRVFTFG--WS 247

Query: 164 P------GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                  GD    + P  V GL+  ++  +A G  H +A   +G L+AWG N++GQLG G
Sbjct: 248 KYGQLGHGDHVDHTRPCLVAGLQHCRVSTVAGGWRHTMAADSEGNLYAWGWNKFGQLGLG 307

Query: 216 DTQPRSQPIPVQGLSGLTL-----------VDIAAGGW-HSTALTDDGEVYGWGRGEHGR 263
           D++ R+ P PV G                 V + A GW H+ A+T+ GEVY WGRG +G+
Sbjct: 308 DSEDRAAPTPVAGFGLAGGGVEAGAATPRRVALLACGWRHTVAVTEAGEVYSWGRGVNGQ 367

Query: 264 LGFG 267
           LG G
Sbjct: 368 LGHG 371



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 46/249 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
           ++  +G  ++GQLG+G+  +     +V AL+  +V SV  GS +SLA  +          
Sbjct: 136 ALYTFGRNQNGQLGLGHTNDCLSPQLVTALQGERVSSVACGSEHSLAATEAGTVFSWGWG 195

Query: 56  ------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG ++    P++V  L    +     G  H   V D+GR + +G ++YGQ G  
Sbjct: 196 RYGNLGDGDSQDRYTPTRVVGLDGVTVTSVVCGWRHSAVVTDEGRVFTFGWSKYGQLGH- 254

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----- 164
            +  D T   L   +   Q C     V  VA G  H++    EG+++ WG  W       
Sbjct: 255 GDHVDHTRPCL---VAGLQHCR----VSTVAGGWRHTMAADSEGNLYAWG--WNKFGQLG 305

Query: 165 -GDIKQISVPVRVQGL--------------EQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
            GD +  + P  V G                +V L+A G  H +A+ E G +++WG    
Sbjct: 306 LGDSEDRAAPTPVAGFGLAGGGVEAGAATPRRVALLACGWRHTVAVTEAGEVYSWGRGVN 365

Query: 210 GQLGTGDTQ 218
           GQLG G  Q
Sbjct: 366 GQLGHGAEQ 374


>gi|74200231|dbj|BAE22920.1| unnamed protein product [Mus musculus]
          Length = 681

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 172 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 228

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 229 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 287

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 288 CGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 345

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 346 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 395

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 396 GCHMLVF 402



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 196

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 197 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 252

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 253 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 298



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 51  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 106

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 107 --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 158

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 159 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 216

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 217 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 276

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 277 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 327

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 328 ----ERIKDQKICH-ISCGENHTALMTEL 351


>gi|410450581|ref|ZP_11304618.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           sp. Fiocruz LV3954]
 gi|410015667|gb|EKO77762.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           sp. Fiocruz LV3954]
          Length = 506

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 145/349 (41%), Gaps = 49/349 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A   S+  WG+   GQLGIGNN           L P  V  +           DD    
Sbjct: 195 IAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-----------DDA--- 240

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                           V  A G  H L +   G   ++G N  GQ G      +      
Sbjct: 241 ----------------VMGAYGFNHALILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFST 284

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 285 NPVAVVNLRD-----VIQVIAGSEHSAALTENGEVYVWGKNQYGNLGNGRLSAANTVQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   PIP Q L+
Sbjct: 339 TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGGSGFPNPTPIPTQVLN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
                 + AGG  S ++   GEV GWG  G    L  G+ + S    P K  ++  E+++
Sbjct: 399 ITNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTSKVYEPNKA-VVGIENVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIP 337
              CG TH+ AL R+G I+ +G    G LG     +  G P  V I +P
Sbjct: 458 HFGCGATHNFALLRNGEIYGWGWNFKGSLGRQDLQSNWGAPNPVSITLP 506



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 120/264 (45%), Gaps = 37/264 (14%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y  G N +GQ G      D+       D+++P      +    +     +S+ + +
Sbjct: 145 NGNVYTVGRNNFGQLGTGHSTGDN-----NNDVIVPLDSIRDIF--SIHFNQNNSMAIAK 197

Query: 152 EGHVWTWGQPWPPGDIKQISV----------------PVRVQGLEQVKLIAVGAFHNLAL 195
            G V+TWG         Q+ +                P  V G++   + A G  H L L
Sbjct: 198 NGSVYTWGNNAK----GQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMGAYGFNHALIL 253

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           + DG L ++G N  GQLG G+           PV  ++   ++ + AG  HS ALT++GE
Sbjct: 254 KSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAALTENGE 313

Query: 253 VYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           VY WG+ ++G LG G    ++ +   P KV  L+G  I Q++ G  H +AL  DG I+S+
Sbjct: 314 VYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIYSW 371

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPI 334
           G    G+LG G    +G P   PI
Sbjct: 372 GLNASGQLGIG---GSGFPNPTPI 392



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 21/216 (9%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP--------WPPGDIKQISVPVRVQGLEQVKLIAVGA 189
           +++AG  HS  L + G+V+T G+            GD     V V +  +  +  I    
Sbjct: 132 KLSAGAAHSGFL-KNGNVYTVGRNNFGQLGTGHSTGDNNN-DVIVPLDSIRDIFSIHFNQ 189

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTG--------DTQPRSQPIPVQGLSGLTLVDIAAGG 241
            +++A+ ++G+++ WGNN  GQLG G        +   R  P  V G+    +   A G 
Sbjct: 190 NNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMG--AYGF 247

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            H+  L  DG +  +G+   G+LG G+ N   +      V ++   D++QV  G  HS A
Sbjct: 248 NHALILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAA 307

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           LT +G ++ +G+  +G LG GR          P+ +
Sbjct: 308 LTENGEVYVWGKNQYGNLGNGRLSAANTVQSTPVKV 343


>gi|6755348|ref|NP_035415.1| X-linked retinitis pigmentosa GTPase regulator isoform 3 [Mus
           musculus]
 gi|3258647|gb|AAC40190.1| retinitis pigmentosa GTPase regulator [Mus musculus]
          Length = 746

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 172 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 228

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 229 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 287

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 288 CGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 345

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 346 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 395

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 396 GCHMLVF 402



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 196

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 197 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 252

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 253 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 298



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 51  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 106

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 107 --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 158

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 159 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 216

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 217 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 276

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 277 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 327

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 328 ----ERIKDQKICH-ISCGENHTALMTEL 351


>gi|47219890|emb|CAF97160.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 4588

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 178/388 (45%), Gaps = 57/388 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDDGKTK---- 60
           ++  WGS    QL  G  E+   + + K  + +   +++ AG   + ++  DG  K    
Sbjct: 339 TVYVWGSNSSHQLAEGTLEK---ILLPKLTQGFSDAQTIEAGQYCTFSVSTDGSVKACGK 395

Query: 61  ------------TENIPSQV--NALSNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQ 105
                        +++P ++      N K V ++ G   H LA+   G  ++WG  EYG+
Sbjct: 396 GSYGRLGLGDSNNQSMPKKLVLEPHRNIKKVFSSKGSDGHTLAITVDGEVFSWGDGEYGK 455

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
            G          +I++  +          IV   +AG  HS  +T +G ++TWG+    G
Sbjct: 456 LGHGNSATQKYPKIVQGPLF-------SKIVVSASAGYRHSAAVTNDGELYTWGE----G 504

Query: 166 DIKQI--------SVPVRVQGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGD 216
           D  ++        + P  V+ +  V  +A G+ H +A+ +DG  +W++G  + G+LG GD
Sbjct: 505 DFGRLGHSDSQSRNTPTLVKDISGVGQVACGSSHTIAVAQDGRTMWSFGGGDNGKLGHGD 564

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           T    +P  ++ L G  +  + AG   S ALT  G+V+ WG G    LG G ++ +S + 
Sbjct: 565 TNRVYRPKVIEALHGFIIRKVCAGSQSSLALTSAGQVFAWGCG--SCLGCGSSETTS-LR 621

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P+ V  L+   I+ +SCG +H +AL+ +  ++++G    G+ G G   T       PI  
Sbjct: 622 PRFVEDLSITKIIDISCGDSHCLALSHENEVYAWGNNTMGQCGQGHTST-------PITR 674

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           P      +GV  + I      G  H+LA
Sbjct: 675 PKKVLGLEGVSIQQITA----GTSHSLA 698



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 23/247 (9%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            Y WG   YGQ          TG  L    + P  C  +   +QV  G   S ++   G V
Sbjct: 3684 YLWGNGRYGQLA-------GTGTNLTLPTLAP--CLSQ--TQQVVCGQNCSFLIQSNGAV 3732

Query: 156  WTWGQ----PWPPGDIKQISVPVRV---QGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+        G+   + VP  +   QG    +L+       H++AL E G +++WG+
Sbjct: 3733 MAVGEGQYGRLGQGNSDDLFVPTIISAFQGYVVTQLVTSCGSDGHSMALTETGEVFSWGD 3792

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             ++G+LG G+ + + +P  ++ L G  +V +A G  HS  +T DG+++ +G GE GRL  
Sbjct: 3793 GDFGKLGHGNNERQRRPKQIEALQGEDVVQLACGFRHSAVVTADGKLFTFGSGESGRL-- 3850

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRGDHGRLGYGRKVT 325
            G    S+KM P++V  L G  + QVSCG  H++ L+ DG  +++FG GD+G+LG G    
Sbjct: 3851 GQRSTSNKMQPERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGDGDYGKLGAGSSTA 3910

Query: 326  TGQPMEV 332
               P +V
Sbjct: 3911 KYYPQKV 3917



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 159/358 (44%), Gaps = 53/358 (14%)

Query: 5    TSIIAWGSGEDGQL-GIGNNEEREWVCVVKALEP--YKVRSVVAGSRNSLAICDDG---- 57
            + +  WG+G  GQL G G N        +  L P   + + VV G   S  I  +G    
Sbjct: 3681 SDVYLWGNGRYGQLAGTGTN------LTLPTLAPCLSQTQQVVCGQNCSFLIQSNGAVMA 3734

Query: 58   ------------KTKTENIPSQVNALSN---TKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                         +    +P+ ++A      T++V +     H +A+ + G  ++WG  +
Sbjct: 3735 VGEGQYGRLGQGNSDDLFVPTIISAFQGYVVTQLVTSCGSDGHSMALTETGEVFSWGDGD 3794

Query: 103  YGQCGE---EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
            +G+ G    E +R+      L+ + V+           Q+A G  HS V+T +G ++T+G
Sbjct: 3795 FGKLGHGNNERQRRPKQIEALQGEDVV-----------QLACGFRHSAVVTADGKLFTFG 3843

Query: 160  QPWPPGDIKQISV-----PVRVQGLE--QVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQ 211
                 G + Q S      P RV  LE   V  ++ G  H L L  DG A+WA+G+ +YG+
Sbjct: 3844 S-GESGRLGQRSTSNKMQPERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGDGDYGK 3902

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
            LG G +  +  P  V+ L    +  +  G   S  L  DG VY +G  +   +G  D+  
Sbjct: 3903 LGAGSSTAKYYPQKVEQLCNKGMKKVCCGAQFSVVLATDGHVYTFG--QERLIGLPDSML 3960

Query: 272  SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
             ++  PQ V  L G  I  ++ G  H +AL+  G I+++G    G+LG G      +P
Sbjct: 3961 KNRSNPQVVPSLEGLFIEDIAVGCEHVLALSSTGDIYAWGCNSEGQLGLGHCNLVKEP 4018



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 126/271 (46%), Gaps = 31/271 (11%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            +  T  + +WG G+ G+LG GNNE +     ++AL+   V  +  G R+S  +  DGK  
Sbjct: 3781 LTETGEVFSWGDGDFGKLGHGNNERQRRPKQIEALQGEDVVQLACGFRHSAVVTADGKLF 3840

Query: 59   --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEY 103
                          T  +  P +V AL    + Q + G  H L +   G A +A+G  +Y
Sbjct: 3841 TFGSGESGRLGQRSTSNKMQPERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAFGDGDY 3900

Query: 104  GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-- 161
            G+ G        T +   +   + Q C   +  ++V  G   SVVL  +GHV+T+GQ   
Sbjct: 3901 GKLGA----GSSTAKYYPQK--VEQLCNKGM--KKVCCGAQFSVVLATDGHVYTFGQERL 3952

Query: 162  --WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               P   +K  S P  V  LE + +  IAVG  H LAL   G ++AWG N  GQLG G  
Sbjct: 3953 IGLPDSMLKNRSNPQVVPSLEGLFIEDIAVGCEHVLALSSTGDIYAWGCNSEGQLGLGHC 4012

Query: 218  QPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
                +P  +  L G  +  I+AG  HS+A T
Sbjct: 4013 NLVKEPTLITALQGKNIKQISAGRCHSSAWT 4043



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 152/334 (45%), Gaps = 48/334 (14%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV--AGSR-NSLAICDDG 57
            + S  +++A G G+ G+LG GN+++     ++ A + Y V  +V   GS  +S+A+ + G
Sbjct: 3726 IQSNGAVMAVGEGQYGRLGQGNSDDLFVPTIISAFQGYVVTQLVTSCGSDGHSMALTETG 3785

Query: 58   KT----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
            +                 + +  P Q+ AL    +VQ A G  H   V   G+ + +G  
Sbjct: 3786 EVFSWGDGDFGKLGHGNNERQRRPKQIEALQGEDVVQLACGFRHSAVVTADGKLFTFGSG 3845

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGH-VWTW 158
            E G+ G+                + P+R A      V QV+ G  H++VL+ +G  VW +
Sbjct: 3846 ESGRLGQRSTSNK----------MQPERVAALEGYHVGQVSCGLNHTLVLSLDGMAVWAF 3895

Query: 159  GQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNE 208
            G     GD  ++          P +V+ L  + +K +  GA  ++ L  DG ++ +G   
Sbjct: 3896 GD----GDYGKLGAGSSTAKYYPQKVEQLCNKGMKKVCCGAQFSVVLATDGHVYTFGQER 3951

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
               L     + RS P  V  L GL + DIA G  H  AL+  G++Y WG    G+LG G 
Sbjct: 3952 LIGLPDSMLKNRSNPQVVPSLEGLFIEDIAVGCEHVLALSSTGDIYAWGCNSEGQLGLGH 4011

Query: 269  NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
             +   +  P  +  L G++I Q+S G  HS A T
Sbjct: 4012 CNLVKE--PTLITALQGKNIKQISAGRCHSSAWT 4043



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 24/221 (10%)

Query: 155 VWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           V+ WG         G +++I +P   QG    + I  G +   ++  DG++ A G   YG
Sbjct: 340 VYVWGSNSSHQLAEGTLEKILLPKLTQGFSDAQTIEAGQYCTFSVSTDGSVKACGKGSYG 399

Query: 211 QLGTGDTQPRSQP--IPVQGLSGLTLVDIAAGG-WHSTALTDDGEVYGWGRGEHGRLGFG 267
           +LG GD+  +S P  + ++    +  V  + G   H+ A+T DGEV+ WG GE+G+LG G
Sbjct: 400 RLGLGDSNNQSMPKKLVLEPHRNIKKVFSSKGSDGHTLAITVDGEVFSWGDGEYGKLGHG 459

Query: 268 DNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           ++  +++  P+ V   L  + +V  S G  HS A+T DG ++++G GD GRLG+    + 
Sbjct: 460 NS--ATQKYPKIVQGPLFSKIVVSASAGYRHSAAVTNDGELYTWGEGDFGRLGHSDSQSR 517

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                   N P       GV +      VACG  HT+A+ +
Sbjct: 518 --------NTPTLVKDISGVGQ------VACGSSHTIAVAQ 544



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 47/328 (14%)

Query: 6   SIIAWGSGEDGQLGIG--NNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK- 58
           S+ A G G  G+LG+G  NN+      V   LEP++    V  S+ S    LAI  DG+ 
Sbjct: 389 SVKACGKGSYGRLGLGDSNNQSMPKKLV---LEPHRNIKKVFSSKGSDGHTLAITVDGEV 445

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNE 102
                          + T+  P  V     +KIV +A  G+ H  AV + G  Y WG  +
Sbjct: 446 FSWGDGEYGKLGHGNSATQKYPKIVQGPLFSKIVVSASAGYRHSAAVTNDGELYTWGEGD 505

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQ- 160
           +G+ G    +  +T  +++ DI           V QVA G +H++ + ++G  +W++G  
Sbjct: 506 FGRLGHSDSQSRNTPTLVK-DISG---------VGQVACGSSHTIAVAQDGRTMWSFGGG 555

Query: 161 ---PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
                  GD  ++  P  ++ L    ++ +  G+  +LAL   G ++AWG      LG G
Sbjct: 556 DNGKLGHGDTNRVYRPKVIEALHGFIIRKVCAGSQSSLALTSAGQVFAWGCGSC--LGCG 613

Query: 216 DTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
            ++  S +P  V+ LS   ++DI+ G  H  AL+ + EVY WG    G+ G G +  +  
Sbjct: 614 SSETTSLRPRFVEDLSITKIIDISCGDSHCLALSHENEVYAWGNNTMGQCGQG-HTSTPI 672

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALT 302
             P+KV  L G  I Q++ G +HS+A T
Sbjct: 673 TRPKKVLGLEGVSIQQITAGTSHSLAWT 700


>gi|5824124|emb|CAB54041.1| RPGR protein [Mus musculus]
          Length = 1001

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 78  PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 134 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 191 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGGHTVVLTEKV-VYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 308 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 357

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 358 GCHMLVF 364



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 40  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 99  TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 159 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 215 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 260



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 69  --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 120

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 121 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 179 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 239 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 289

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 290 ----ERIKDQKICH-ISCGENHTALMTEL 313


>gi|449081281|sp|Q9R0X5.2|RPGR_MOUSE RecName: Full=X-linked retinitis pigmentosa GTPase regulator;
           Short=mRpgr; Flags: Precursor
          Length = 1001

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 78  PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 134 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 191 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGGHTVVLTEKV-VYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 308 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 357

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 358 GCHMLVF 364



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 40  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 99  TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 159 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 215 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 260



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 69  --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 120

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 121 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 179 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 239 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 289

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 290 ----ERIKDQKICH-ISCGENHTALMTEL 313


>gi|295789055|ref|NP_001171421.1| X-linked retinitis pigmentosa GTPase regulator isoform 1 [Mus
           musculus]
          Length = 1039

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 172 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 228

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 229 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 287

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 288 CGGGHTVVLTEKV-VYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 345

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 346 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 395

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 396 GCHMLVF 402



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 196

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 197 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 252

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 253 GEPENGKLGL--------PNELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 298



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 149/329 (45%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 51  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 106

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 107 --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 158

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 159 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 216

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 217 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 276

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 277 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 327

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 328 ----ERIKDQKICH-ISCGENHTALMTEL 351


>gi|390352695|ref|XP_003727958.1| PREDICTED: uncharacterized protein LOC100887866 [Strongylocentrotus
           purpuratus]
          Length = 1139

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 13/199 (6%)

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI---SVPVRVQGLE----QV 182
           L  + V A G     +   G V+TWG+        GDI  +   + P+RV+ L      V
Sbjct: 771 LPTQNVLACGQDHAAIVANGDVYTWGRAHEGRLGQGDIMSLDGRAPPLRVETLHMHGIHV 830

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
           + +A G  H +A+ ++G L++WG++ YGQLG GD    S+P+ V+ LSG   + +A G  
Sbjct: 831 RAVACGKEHTMAVTQEGKLYSWGSSSYGQLGVGDRNVHSRPVAVEALSGQRCLSVACGQL 890

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           H+  LT D  ++ +G G HG+LG GD +   +++P+ VN L+   IV +S G  HS ALT
Sbjct: 891 HTLVLTQDQRLWSFGWGVHGQLGHGDVE--DQILPKLVNQLSKCAIVGISAGYAHSGALT 948

Query: 303 RDGHIFSFGRGDHGRLGYG 321
            DG ++ FG    G+LG G
Sbjct: 949 NDGQVWMFGSSSFGQLGTG 967



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 58/322 (18%)

Query: 80   AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
            A G  H +AV  +G+ Y+WG + YGQ G     ++   R +  + +  QRC        V
Sbjct: 834  ACGKEHTMAVTQEGKLYSWGSSSYGQLGVGD--RNVHSRPVAVEALSGQRCL------SV 885

Query: 140  AAGGTHSVVLTREGHVWTWGQPWP------PGDIKQISVPVRVQGLEQVKL--IAVGAFH 191
            A G  H++VLT++  +W++G  W        GD++   +P  V  L +  +  I+ G  H
Sbjct: 886  ACGQLHTLVLTQDQRLWSFG--WGVHGQLGHGDVEDQILPKLVNQLSKCAIVGISAGYAH 943

Query: 192  NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            + AL  DG +W +G++ +GQLGTG     + P+ ++ LS   +  +  G + + A+T + 
Sbjct: 944  SGALTNDGQVWMFGSSSFGQLGTGSIGKSTVPVRLKALSSHHVSILTCGYYSNIAITSNP 1003

Query: 252  E-VYGWG-------------RGEHGRLGFGDND--------------KSSKMVPQKVNLL 283
            + VY WG             R  H    + + D              ++  ++P  V   
Sbjct: 1004 QKVYTWGKSPLELRQALQLARKRHQSSRYSNPDPHHQTVTRLPSLPLENQHLLPSLVPTN 1063

Query: 284  AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
                I +++  G H + LT  G ++S+G  + G+LG G +V+      VP+ I   R   
Sbjct: 1064 IQAPIKKMTMSGNHYLMLTTVGDLYSWGSNEAGQLGMGNRVS----QSVPVLINRSR--- 1116

Query: 344  DGVDRRWIAKLVACGGRHTLAI 365
               D +++A  VA G R +LA+
Sbjct: 1117 ---DDQFVA--VAAGSRFSLAV 1133



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 22/238 (9%)

Query: 88   AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAG 142
            A+   G  Y WG    G+ G+        G I+  D   P      L      VR VA G
Sbjct: 785  AIVANGDVYTWGRAHEGRLGQ--------GDIMSLDGRAPPLRVETLHMHGIHVRAVACG 836

Query: 143  GTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQ 196
              H++ +T+EG +++WG         GD    S PV V+ L  ++   +A G  H L L 
Sbjct: 837  KEHTMAVTQEGKLYSWGSSSYGQLGVGDRNVHSRPVAVEALSGQRCLSVACGQLHTLVLT 896

Query: 197  EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
            +D  LW++G   +GQLG GD + +  P  V  LS   +V I+AG  HS ALT+DG+V+ +
Sbjct: 897  QDQRLWSFGWGVHGQLGHGDVEDQILPKLVNQLSKCAIVGISAGYAHSGALTNDGQVWMF 956

Query: 257  GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH-IFSFGRG 313
            G    G+LG G   KS+  VP ++  L+   +  ++CG   ++A+T +   ++++G+ 
Sbjct: 957  GSSSFGQLGTGSIGKST--VPVRLKALSSHHVSILTCGYYSNIAITSNPQKVYTWGKS 1012



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 118/295 (40%), Gaps = 64/295 (21%)

Query: 7    IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
            + +WGS   GQLG+G+         V+AL   +  SV  G  ++L +  D          
Sbjct: 849  LYSWGSSSYGQLGVGDRNVHSRPVAVEALSGQRCLSVACGQLHTLVLTQDQRLWSFGWGV 908

Query: 57   ------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                  G  + + +P  VN LS   IV  + G  H  A+ + G+ + +G + +GQ G   
Sbjct: 909  HGQLGHGDVEDQILPKLVNQLSKCAIVGISAGYAHSGALTNDGQVWMFGSSSFGQLG--- 965

Query: 111  ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH-VWTWGQPWPPGDIKQ 169
                 TG I +  + +  +      V  +  G   ++ +T     V+TWG+   P +++Q
Sbjct: 966  -----TGSIGKSTVPVRLKALSSHHVSILTCGYYSNIAITSNPQKVYTWGK--SPLELRQ 1018

Query: 170  I---------------------------SVPVRVQGL----------EQVKLIAVGAFHN 192
                                        S+P+  Q L            +K + +   H 
Sbjct: 1019 ALQLARKRHQSSRYSNPDPHHQTVTRLPSLPLENQHLLPSLVPTNIQAPIKKMTMSGNHY 1078

Query: 193  LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
            L L   G L++WG+NE GQLG G+   +S P+ +        V +AAG   S A+
Sbjct: 1079 LMLTTVGDLYSWGSNEAGQLGMGNRVSQSVPVLINRSRDDQFVAVAAGSRFSLAV 1133



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSK 274
           DT   S  +PV  L  L   ++ A G    A+  +G+VY WGR   GRLG GD      +
Sbjct: 757 DTLNSSDRLPVGLL--LPTQNVLACGQDHAAIVANGDVYTWGRAHEGRLGQGDIMSLDGR 814

Query: 275 MVPQKVNLLA--GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             P +V  L   G  +  V+CG  H++A+T++G ++S+G   +G+LG G +    +P+ V
Sbjct: 815 APPLRVETLHMHGIHVRAVACGKEHTMAVTQEGKLYSWGSSSYGQLGVGDRNVHSRPVAV 874

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
                    A  G  +R ++  VACG  HTL + + Q
Sbjct: 875 --------EALSG--QRCLS--VACGQLHTLVLTQDQ 899


>gi|345795569|ref|XP_535652.3| PREDICTED: E3 ISG15--protein ligase HERC5 [Canis lupus familiaris]
          Length = 1263

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 29/239 (12%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVK---LIAVGA 189
           K+ +  V  G  H ++L+ +G  + +        I+      R Q + Q K    I  G 
Sbjct: 336 KMKIHSVDQGAEHMLILSSDGKPFEYNY-----SIEH----ARFQCILQEKSIIQITCGD 386

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTAL 247
           +H+LAL + G L+AWG N +GQLG G     S P P  V+ LSG+ LV I+AG  HS AL
Sbjct: 387 YHSLALSKGGELFAWGQNLHGQLGVGRLF-TSIPTPQLVEHLSGVPLVQISAGKAHSMAL 445

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +  G +Y WGR + G+LG G  +      P  +  L  + +  ++CGG+H+  LT+DG +
Sbjct: 446 SMSGNIYSWGRNDLGQLGLGHTNGED--FPSLIEALDNQKVEFLACGGSHTALLTKDGLV 503

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           F+FG G +G+LG+       +P  V         AG+ V +      VACG  HTLA V
Sbjct: 504 FTFGAGKYGQLGHNSTQNELRPRLVT------ELAGNRVTQ------VACGRWHTLAYV 550



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 115/212 (54%), Gaps = 14/212 (6%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKL--IAV 187
           + Q+  G  HS+ L++ G ++ WGQ    G +        I  P  V+ L  V L  I+ 
Sbjct: 379 IIQITCGDYHSLALSKGGELFAWGQNLH-GQLGVGRLFTSIPTPQLVEHLSGVPLVQISA 437

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H++AL   G +++WG N+ GQLG G T     P  ++ L    +  +A GG H+  L
Sbjct: 438 GKAHSMALSMSGNIYSWGRNDLGQLGLGHTNGEDFPSLIEALDNQKVEFLACGGSHTALL 497

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GH 306
           T DG V+ +G G++G+L  G N   +++ P+ V  LAG  + QV+CG  H++A   D G 
Sbjct: 498 TKDGLVFTFGAGKYGQL--GHNSTQNELRPRLVTELAGNRVTQVACGRWHTLAYVSDLGK 555

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           +FSFG G  G+LG G   T  Q + +P+ +P+
Sbjct: 556 VFSFGSGKEGQLGNGG--THNQLIPLPMKLPS 585



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 42/279 (15%)

Query: 32  VKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVN----ALSNTKIVQAAIGGWHCL 87
           +K  +  K+ SV  G+ + L +  DGK    N   +       L    I+Q   G +H L
Sbjct: 331 IKLGKKMKIHSVDQGAEHMLILSSDGKPFEYNYSIEHARFQCILQEKSIIQITCGDYHSL 390

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVA 140
           A+   G  +AWG N +GQ G         GR+      IP    P+L+       + Q++
Sbjct: 391 ALSKGGELFAWGQNLHGQLG--------VGRLF---TSIP---TPQLVEHLSGVPLVQIS 436

Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGL--EQVKLIAVGAF 190
           AG  HS+ L+  G++++WG+     D+ Q+          P  ++ L  ++V+ +A G  
Sbjct: 437 AGKAHSMALSMSGNIYSWGR----NDLGQLGLGHTNGEDFPSLIEALDNQKVEFLACGGS 492

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H   L +DG ++ +G  +YGQLG   TQ   +P  V  L+G  +  +A G WH+ A   D
Sbjct: 493 HTALLTKDGLVFTFGAGKYGQLGHNSTQNELRPRLVTELAGNRVTQVACGRWHTLAYVSD 552

Query: 251 -GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            G+V+ +G G+ G+LG G     ++++P  + L + E++
Sbjct: 553 LGKVFSFGSGKEGQLGNGGTH--NQLIPLPMKLPSNEEL 589



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 25/180 (13%)

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           GA H L L  DG  + +  +            R Q I    L   +++ I  G +HS AL
Sbjct: 345 GAEHMLILSSDGKPFEYNYS--------IEHARFQCI----LQEKSIIQITCGDYHSLAL 392

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +  GE++ WG+  HG+LG G    +S   PQ V  L+G  +VQ+S G  HS+AL+  G+I
Sbjct: 393 SKGGELFAWGQNLHGQLGVG-RLFTSIPTPQLVEHLSGVPLVQISAGKAHSMALSMSGNI 451

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +S+GR D G+LG G   T G+  + P  I A  N           + +ACGG HT  + +
Sbjct: 452 YSWGRNDLGQLGLGH--TNGE--DFPSLIEALDNQK--------VEFLACGGSHTALLTK 499



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  + GQLG+G+    ++  +++AL+  KV  +  G  ++  +  DG   
Sbjct: 445 LSMSGNIYSWGRNDLGQLGLGHTNGEDFPSLIEALDNQKVEFLACGGSHTALLTKDGLVF 504

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLA-VDDQGRAYAWGGNEY 103
                         T+ E  P  V  L+  ++ Q A G WH LA V D G+ +++G  + 
Sbjct: 505 TFGAGKYGQLGHNSTQNELRPRLVTELAGNRVTQVACGRWHTLAYVSDLGKVFSFGSGKE 564

Query: 104 GQCG 107
           GQ G
Sbjct: 565 GQLG 568


>gi|349605413|gb|AEQ00660.1| putative E3 ubiquitin-protein ligase HERC4-like protein, partial
           [Equus caballus]
          Length = 911

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 15/183 (8%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           +A G +H+LAL +   ++ WG N+YGQLG G D + ++ P  ++ L G+  + +AAGG H
Sbjct: 3   VACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQVAAGGAH 62

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S  LT  G ++GWGR + G+LG   ND++ +  P  +  L  + IV + CG  H+ ALT+
Sbjct: 63  SFVLTLSGAIFGWGRNKFGQLGL--NDENDRYFPNLLKSLRTQKIVYICCGEDHTAALTK 120

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +G +F+FG G +G+LG+    +T   +        PR   + +    I   +ACG +HT 
Sbjct: 121 EGGVFTFGAGGYGQLGHN---STSHEIN-------PRKVFELMGS--IVTQIACGRQHTS 168

Query: 364 AIV 366
           A V
Sbjct: 169 AFV 171



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPG-----DIKQISVPVRVQGLEQVKL--IAVGAF 190
           QVA G  HS+ L++   V+ WGQ          D K+ + P  ++ L  +    +A G  
Sbjct: 2   QVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQVAAGGA 61

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           H+  L   GA++ WG N++GQLG  D   R  P  ++ L    +V I  G  H+ ALT +
Sbjct: 62  HSFVLTLSGAIFGWGRNKFGQLGLNDENDRYFPNLLKSLRTQKIVYICCGEDHTAALTKE 121

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFS 309
           G V+ +G G +G+L  G N  S ++ P+KV  L G  + Q++CG  H+ A     G I+S
Sbjct: 122 GGVFTFGAGGYGQL--GHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYS 179

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV-----PINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           FG G +G+LG G       P  V     P N   P +     +  +  K +  GG  + A
Sbjct: 180 FGLGGNGQLGTGSTSNRKSPFTVKGNWFPYNGQCPTDIDS--EEYFCVKRIFSGGDQSFA 237



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE-RKDDTGRILRRDIVIPQRCAPKLI 135
           VQ A G +H LA+      + WG N+YGQ G   + +K  + ++++  + IP        
Sbjct: 1   VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIP-------- 52

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GA 189
             QVAAGG HS VLT  G ++ WG+         D      P  ++ L   K++ +  G 
Sbjct: 53  FMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYFPNLLKSLRTQKIVYICCGE 112

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT- 248
            H  AL ++G ++ +G   YGQLG   T     P  V  L G  +  IA G  H++A   
Sbjct: 113 DHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVP 172

Query: 249 DDGEVYGWGRGEHGRLGFG 267
             G +Y +G G +G+LG G
Sbjct: 173 SSGRIYSFGLGGNGQLGTG 191



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           V +A G +HS AL+   EV+ WG+ ++G+LG G  D   +  PQ +  L G   +QV+ G
Sbjct: 1   VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGI-DYKKQASPQLIKSLLGIPFMQVAAG 59

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLG 319
           G HS  LT  G IF +GR   G+LG
Sbjct: 60  GAHSFVLTLSGAIFGWGRNKFGQLG 84



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 52/236 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++  + +  WG  + GQLG+G +                                    K
Sbjct: 13  LSKASEVFCWGQNKYGQLGLGID-----------------------------------YK 37

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
            +  P  + +L     +Q A GG H   +   G  + WG N++GQ G   E       +L
Sbjct: 38  KQASPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYFPNLL 97

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGDIKQISVPVR 175
           +   +  Q+      +  +  G  H+  LT+EG V+T     +GQ        +I+ P +
Sbjct: 98  KS--LRTQK------IVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEIN-PRK 148

Query: 176 VQGL--EQVKLIAVGAFHNLAL-QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           V  L    V  IA G  H  A     G ++++G    GQLGTG T  R  P  V+G
Sbjct: 149 VFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKG 204



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 17/80 (21%)

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG---RKVTTGQPMEVPINIPAPRNAGDG 345
           VQV+CG  HS+AL++   +F +G+  +G+LG G   +K  + Q ++  + IP  +     
Sbjct: 1   VQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDYKKQASPQLIKSLLGIPFMQ----- 55

Query: 346 VDRRWIAKLVACGGRHTLAI 365
                    VA GG H+  +
Sbjct: 56  ---------VAAGGAHSFVL 66


>gi|218193272|gb|EEC75699.1| hypothetical protein OsI_12517 [Oryza sativa Indica Group]
          Length = 555

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 146/314 (46%), Gaps = 39/314 (12%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG---EEPERKDDTGRILRRDIVIPQR 129
           N + +  A G  H  AV   G  Y WG N++GQ G   EE  ++    + L  + V    
Sbjct: 135 NLRWIDVACGRGHTAAVASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSVS 194

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS----VPVRVQGLEQVKLI 185
           C        VA    ++  ++R   +W WGQ     D  ++      P  V     ++ +
Sbjct: 195 CGAHCTA-AVAEPRENNGTISRS-RLWVWGQN-QGSDYPRLFWGALAPNTV-----IRQV 246

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG---------LTLVD 236
           + GA H +AL EDG L AWG NEYGQLG G T    Q   V              + +V 
Sbjct: 247 SCGAVHVMALSEDGLLQAWGYNEYGQLGRGCTSEGLQGARVLNAYARFLDEAPELVKIVR 306

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK-MVPQKVNLLAGEDIVQVSCGG 295
           ++ G +H+ A++++GEVY WG G  G+LG        K ++P++V  L    I  VSCGG
Sbjct: 307 VSCGEYHTAAISENGEVYTWGLGSMGQLGHCSLQSGDKELIPRRVVALDRTVIRDVSCGG 366

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRK------VTTGQPMEVPINIPAPRNAGDGVDRR 349
            HS A+T DG ++++G G  G+LG G +         G  M +  NIP       GV   
Sbjct: 367 VHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLR-NIPV-LIIPSGV--- 421

Query: 350 WIAKLVACGGRHTL 363
              +LV CG  HTL
Sbjct: 422 ---QLVTCGHSHTL 432



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 162/348 (46%), Gaps = 58/348 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           +AS  S+  WG+ + GQLG G  E  +    VKALE   V+SV  G+  + A+ +     
Sbjct: 151 VASDGSLYTWGANDFGQLGDGTEESAKEPQKVKALETEFVKSVSCGAHCTAAVAEPRENN 210

Query: 57  -----------GKTKTENIPSQV-NALS-NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                      G+ +  + P     AL+ NT I Q + G  H +A+ + G   AWG NEY
Sbjct: 211 GTISRSRLWVWGQNQGSDYPRLFWGALAPNTVIRQVSCGAVHVMALSEDGLLQAWGYNEY 270

Query: 104 GQCGEEPERKDDTG-RILRRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G     +   G R+L          AP+L+ + +V+ G  H+  ++  G V+TWG  
Sbjct: 271 GQLGRGCTSEGLQGARVLNAYARFLDE-APELVKIVRVSCGEYHTAAISENGEVYTWGL- 328

Query: 162 WPPGDIKQIS-----------VPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNE 208
              G + Q+            +P RV  L++  ++ ++ G  H+ A+ EDGAL+AWG   
Sbjct: 329 ---GSMGQLGHCSLQSGDKELIPRRVVALDRTVIRDVSCGGVHSCAVTEDGALYAWGGGH 385

Query: 209 YGQLGTG-------------DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
            GQLG G             D   R+ P+ +   SG+ LV    G  H+     D  +YG
Sbjct: 386 VGQLGLGPQSGFFSCALNGSDMLLRNIPVLIIP-SGVQLV--TCGHSHTLVSMKDSRIYG 442

Query: 256 WGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALT 302
           WG   +G+     N+KS+    P  V+   GE + +++ GG HS  LT
Sbjct: 443 WGYNSYGQAA---NEKSTYAWFPSPVDWCVGE-VRRLAAGGGHSAVLT 486



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 103/258 (39%), Gaps = 51/258 (19%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQV 68
           AWG  E GQLG G        C  + L+  +V +  A                +  P  V
Sbjct: 264 AWGYNEYGQLGRG--------CTSEGLQGARVLNAYA-------------RFLDEAPELV 302

Query: 69  NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ 128
                 KIV+ + G +H  A+ + G  Y WG    GQ G    +  D   I RR + +  
Sbjct: 303 ------KIVRVSCGEYHTAAISENGEVYTWGLGSMGQLGHCSLQSGDKELIPRRVVALD- 355

Query: 129 RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----------------QPWPPGDIKQIS 171
               + ++R V+ GG HS  +T +G ++ WG                       D+   +
Sbjct: 356 ----RTVIRDVSCGGVHSCAVTEDGALYAWGGGHVGQLGLGPQSGFFSCALNGSDMLLRN 411

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           +PV +     V+L+  G  H L   +D  ++ WG N YGQ     +     P PV    G
Sbjct: 412 IPVLIIP-SGVQLVTCGHSHTLVSMKDSRIYGWGYNSYGQAANEKSTYAWFPSPVDWCVG 470

Query: 232 LTLVDIAAGGWHSTALTD 249
             +  +AAGG HS  LTD
Sbjct: 471 -EVRRLAAGGGHSAVLTD 487


>gi|27923092|gb|AAO27483.1| HERC2 [Homo sapiens]
          Length = 409

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 25/241 (10%)

Query: 140 AAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV----GAFH 191
           AAGG HS  +T  G ++TWG+         D +    P  V+ L+  +++ +    G   
Sbjct: 1   AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQ 60

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            L L +D  +W+WG+ +YG+LG G +     P+ +  L+GL +V +  G   S ALT  G
Sbjct: 61  TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSG 120

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            VY WG+G++ RLG G +D   +  P++V  L G+ ++ ++ G  H V  T DG ++++G
Sbjct: 121 AVYTWGKGDYHRLGHGSDDHVRR--PRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 178

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
             D G+LG G    T   ++ P  + A +  G  V+R      VACG  HTLA   W T 
Sbjct: 179 DNDEGQLGDG----TTNAIQRPRLVAALQ--GKKVNR------VACGSAHTLA---WSTS 223

Query: 372 E 372
           +
Sbjct: 224 K 224



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 28/234 (11%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRRDIVIPQRCAPKLIV 136
           A GG H   V   G  Y WG   YG+ G    E + K      L+   V+   C      
Sbjct: 1   AAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG----- 55

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAV- 187
               +G   ++ LT +  VW+WG     GD  ++         VP+++  L  + ++ V 
Sbjct: 56  ----SGDAQTLCLTDDDTVWSWGD----GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE 107

Query: 188 -GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G+  ++AL + GA++ WG  +Y +LG G      +P  VQGL G  ++ IA G  H   
Sbjct: 108 CGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVC 167

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            T+DGEVY WG  + G+LG G  +   +  P+ V  L G+ + +V+CG  H++A
Sbjct: 168 CTEDGEVYTWGDNDEGQLGDGTTNAIQR--PRLVAALQGKKVNRVACGSAHTLA 219



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 32/212 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC--DD-------- 56
           +  WG G  G+LG  ++E++    +V+AL+ ++V  +  GS ++  +C  DD        
Sbjct: 16  LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 75

Query: 57  --------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   G +    +P ++++L+   +V+   G    +A+   G  Y WG  +Y + G 
Sbjct: 76  GDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGH 135

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                DD    +RR   +      K+I   +A G  H V  T +G V+TWG         
Sbjct: 136 G---SDDH---VRRPRQVQGLQGKKVIA--IATGSLHCVCCTEDGEVYTWGDNDEGQLGD 187

Query: 165 GDIKQISVPVRVQGLE--QVKLIAVGAFHNLA 194
           G    I  P  V  L+  +V  +A G+ H LA
Sbjct: 188 GTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 219



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 32/202 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +    ++ +WG G+ G+LG G ++  +    + +L    V  V  GS+ S+A+   G   
Sbjct: 64  LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVY 123

Query: 61  T--------------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T              +++  P QV  L   K++  A G  HC+   + G  Y WG N+ G
Sbjct: 124 TWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEG 183

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
           Q G      D T   ++R  ++      K  V +VA G  H++        W+  +P   
Sbjct: 184 QLG------DGTTNAIQRPRLVAALQGKK--VNRVACGSAHTL-------AWSTSKPASA 228

Query: 165 GDIKQISVPVRVQGLEQVKLIA 186
           G +    VP+    L+++ +IA
Sbjct: 229 GKLPA-QVPMEYNHLQEIPIIA 249


>gi|418677141|ref|ZP_13238419.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. RM52]
 gi|421090648|ref|ZP_15551439.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 200802841]
 gi|400323041|gb|EJO70897.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. RM52]
 gi|410000530|gb|EKO51159.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 200802841]
          Length = 507

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 150/345 (43%), Gaps = 51/345 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+   GQLGIGNN            +P K     AG+R                P+
Sbjct: 200 VYTWGANSKGQLGIGNNNT----------DPAKASD--AGNRQP--------------PT 233

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++  ++N   V  A G  H L +   G   A+G N  GQ G      +          VI
Sbjct: 234 EIPGINNA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVI 291

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---------PPGDIKQISVPVRVQ 177
             R      V QV AG  HS  LT  G V+ WG+            P +  Q SVPV+V+
Sbjct: 292 QLRN-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGIVSPANTVQ-SVPVKVE 345

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           GL ++K IA G  H LAL  DG +++WG N  GQLG G     + P        L + D+
Sbjct: 346 GLPKIKQIANGRDHILALTYDGKIYSWGLNASGQLGIGGN--GNPPPTPIPTKILNIQDV 403

Query: 238 A---AGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           A   AGG  S A+  +GEV GWG  G    L  G+++      P K  ++  +++V   C
Sbjct: 404 ASIWAGGTQSFAILKNGEVKGWGANGNMASLALGESNTPKVYEPNKA-VVGIDNVVHFGC 462

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIP 337
           G TH+ AL  +G I+ +G    G LG        G P  V I +P
Sbjct: 463 GATHNFALLGNGEIYGWGWNFKGSLGRNDLQNNWGAPNPVSIKLP 507



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 30/250 (12%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
            G  Y  G N +GQ G      D+   RI++ D +          +  +     +S+ ++
Sbjct: 144 NGELYTVGRNNFGQLGMGISTGDNINDRIMKVDRIRD--------IFSIHFNQNNSMAIS 195

Query: 151 REGHVWTWG--------------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           + G V+TWG               P    D      P  + G+    + A G  H L L+
Sbjct: 196 QSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMGAYGFNHALILK 255

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            DG + A+G N  GQLG G+           PV  +    ++ + AG  HS ALT++GEV
Sbjct: 256 SDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENGEV 315

Query: 254 YGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           Y WGR ++G LG G      + + VP KV  L    I Q++ G  H +ALT DG I+S+G
Sbjct: 316 YVWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYSWG 373

Query: 312 RGDHGRLGYG 321
               G+LG G
Sbjct: 374 LNASGQLGIG 383



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 46/276 (16%)

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
           K   G IL ++I             +++AGG HS  L   G ++T G+     +  Q+ +
Sbjct: 113 KKSNGFILSQEIHF-------YFGTKLSAGGAHSGFLIN-GELYTVGR----NNFGQLGM 160

Query: 173 PV--------RVQGLEQVKLIAVGAFH---NLALQEDGALWAWGNNEYGQLGTGD--TQP 219
            +        R+  +++++ I    F+   ++A+ + G ++ WG N  GQLG G+  T P
Sbjct: 161 GISTGDNINDRIMKVDRIRDIFSIHFNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDP 220

Query: 220 --------RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND- 270
                   R  P  + G++   +   A G  H+  L  DG V  +G+   G+LG G+N+ 
Sbjct: 221 AKASDAGNRQPPTEIPGINNAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGENNL 278

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             +      VN++   +++QV  G  HS ALT +G ++ +GR  +G LG G         
Sbjct: 279 NRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGIVSPANTVQ 338

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            VP+ +       +G+ +    K +A G  H LA+ 
Sbjct: 339 SVPVKV-------EGLPK---IKQIANGRDHILALT 364



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 107/258 (41%), Gaps = 41/258 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIG-NNEEREWVCV--VKALEPYKVRSVVAGSRNSLAICDDG 57
           + S  +++A+G    GQLG G NN  R       V  ++   V  V+AGS +S A+ ++G
Sbjct: 254 LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENG 313

Query: 58  K--------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +                       +++P +V  L   KI Q A G  H LA+   G+ Y+
Sbjct: 314 EVYVWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYS 371

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG N  GQ G           I  + + I         V  + AGGT S  + + G V  
Sbjct: 372 WGLNASGQLGIGGNGNPPPTPIPTKILNIQD-------VASIWAGGTQSFAILKNGEVKG 424

Query: 158 WGQ-------PWPPGDIKQISVPVR-VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
           WG             +  ++  P + V G++ V     GA HN AL  +G ++ WG N  
Sbjct: 425 WGANGNMASLALGESNTPKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFK 484

Query: 210 GQLGTGDTQPR-SQPIPV 226
           G LG  D Q     P PV
Sbjct: 485 GSLGRNDLQNNWGAPNPV 502


>gi|393912009|gb|EJD76547.1| hect domain and RLD 4 [Loa loa]
          Length = 1043

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 35/301 (11%)

Query: 40  VRSVVAGSRNSLAICDDGKT-----------------KTENIPSQVNALSNTKIVQAAIG 82
           V++V +G +++L + +DGK                  +       V+  +  +I+Q + G
Sbjct: 49  VKAVASGEKHTLFLANDGKVWSCGSNYNGELGRGGVKEGSYTIYPVHISNAVRIIQISAG 108

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
             H +AV D GR +AWG N +GQ          +G IL  D   P+R        QVA G
Sbjct: 109 RSHSMAVSDDGRLFAWGSNSHGQLAM-------SGDILISD--TPKRVPSLPETVQVACG 159

Query: 143 GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA--FHNLALQEDGA 200
            +H+V L   G V+ WGQ    G I+    P  V+    V +I + A     +AL   G 
Sbjct: 160 ASHTVSLNGGGRVFIWGQQ-SDGRIRH--SPAEVELFVSVPIIQISAGNLFTMALTASGT 216

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           L+AWG NE GQLG    +    P  V  ++ + +V+   G  HS ALT +G V+  G   
Sbjct: 217 LFAWGRNEEGQLGNFTNRDVINPREVPNINSVVVVE--CGDSHSIALTHEGRVFSCGSDS 274

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+LG G   +S   + + +  + G  + +++CG  H++ +  +G + +FG   +G+LG+
Sbjct: 275 FGQLGCGQPSRSQNCM-RGITEMLGSHVTRIACGRCHTIVVA-NGKMHTFGLNSNGQLGH 332

Query: 321 G 321
           G
Sbjct: 333 G 333



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 36/293 (12%)

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
            A G  H L + + G+ ++ G N  G+ G    ++           + P   +  + + Q
Sbjct: 52  VASGEKHTLFLANDGKVWSCGSNYNGELGRGGVKEGSY-------TIYPVHISNAVRIIQ 104

Query: 139 VAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
           ++AG +HS+ ++ +G ++ WG     Q    GDI     P RV  L +   +A GA H +
Sbjct: 105 ISAGRSHSMAVSDDGRLFAWGSNSHGQLAMSGDILISDTPKRVPSLPETVQVACGASHTV 164

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           +L   G ++ WG    G++       R  P  V+    + ++ I+AG   + ALT  G +
Sbjct: 165 SLNGGGRVFIWGQQSDGRI-------RHSPAEVELFVSVPIIQISAGNLFTMALTASGTL 217

Query: 254 YGWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           + WGR E G+LG F + D  +      +N      +V V CG +HS+ALT +G +FS G 
Sbjct: 218 FAWGRNEEGQLGNFTNRDVINPREVPNIN-----SVVVVECGDSHSIALTHEGRVFSCGS 272

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              G+LG G+   +   M     +      G  V R      +ACG  HT+ +
Sbjct: 273 DSFGQLGCGQPSRSQNCMRGITEM-----LGSHVTR------IACGRCHTIVV 314



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 132/286 (46%), Gaps = 43/286 (15%)

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APK----LIVRQVAAGGTHSV 147
           + Y +G    GQ    P    +  +++    + P     AP     + V+ VA+G  H++
Sbjct: 5   QLYVFGCASDGQLAFRPNSAGNDAQMM----LFPHLVYGAPTGQHGVTVKAVASGEKHTL 60

Query: 148 VLTREGHVWTWGQPWP----PGDIKQISV---PVRVQGLEQVKLIAVGAFHNLALQEDGA 200
            L  +G VW+ G  +      G +K+ S    PV +    ++  I+ G  H++A+ +DG 
Sbjct: 61  FLANDGKVWSCGSNYNGELGRGGVKEGSYTIYPVHISNAVRIIQISAGRSHSMAVSDDGR 120

Query: 201 LWAWGNNEYGQLG-TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           L+AWG+N +GQL  +GD      P  V  L     V +A G  H+ +L   G V+ WG+ 
Sbjct: 121 LFAWGSNSHGQLAMSGDILISDTPKRVPSLP--ETVQVACGASHTVSLNGGGRVFIWGQQ 178

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             GR+         +  P +V L     I+Q+S G   ++ALT  G +F++GR + G+LG
Sbjct: 179 SDGRI---------RHSPAEVELFVSVPIIQISAGNLFTMALTASGTLFAWGRNEEGQLG 229

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                    P EVP NI +               +V CG  H++A+
Sbjct: 230 NFTNRDVINPREVP-NINS-------------VVVVECGDSHSIAL 261



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 48/243 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS------VVAGSRNSLAICDDGKT- 59
           + AWGS   GQL +  +       ++ +  P +V S      V  G+ +++++   G+  
Sbjct: 121 LFAWGSNSHGQLAMSGD-------ILISDTPKRVPSLPETVQVACGASHTVSLNGGGRVF 173

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   +  + P++V    +  I+Q + G    +A+   G  +AWG NE GQ G    
Sbjct: 174 IWGQQSDGRIRHSPAEVELFVSVPIIQISAGNLFTMALTASGTLFAWGRNEEGQLGN--- 230

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
                     RD++ P+       V  V  G +HS+ LT EG V++ G         Q+ 
Sbjct: 231 -------FTNRDVINPREVPNINSVVVVECGDSHSIALTHEGRVFSCGS----DSFGQLG 279

Query: 172 V--PVRVQGL---------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              P R Q             V  IA G  H + +  +G +  +G N  GQLG G+T+ +
Sbjct: 280 CGQPSRSQNCMRGITEMLGSHVTRIACGRCHTIVVA-NGKMHTFGLNSNGQLGHGNTRNQ 338

Query: 221 SQP 223
             P
Sbjct: 339 ITP 341



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 28/142 (19%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA---GSRNSLAICD 55
           MA T S  + AWG  E+GQLG   N +     V+   E   + SVV    G  +S+A+  
Sbjct: 209 MALTASGTLFAWGRNEEGQLGNFTNRD-----VINPREVPNINSVVVVECGDSHSIALTH 263

Query: 56  DGK-----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           +G+                 ++++N    +  +  + + + A G  H + V + G+ + +
Sbjct: 264 EGRVFSCGSDSFGQLGCGQPSRSQNCMRGITEMLGSHVTRIACGRCHTIVVAN-GKMHTF 322

Query: 99  GGNEYGQCGEEPERKDDTGRIL 120
           G N  GQ G    R   T R++
Sbjct: 323 GLNSNGQLGHGNTRNQITPRMI 344


>gi|281202576|gb|EFA76778.1| regulator of chromosome condensation domain-containing protein
           [Polysphondylium pallidum PN500]
          Length = 2305

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 43/284 (15%)

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR---QVAAGGTHSVVLTREGH 154
           WG   Y + G +   KD            P+R  P   +     ++ G  +S  LT  G 
Sbjct: 547 WGSGSYCKLGFKSVEKDSQP--------TPERL-PNFNISDICSISCGSYYSAALTENGD 597

Query: 155 VWTWGQ---PWPP------GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
           V+ WG+     PP      G      +P +V+ L+++ +I++G +H+ A++ +G L  WG
Sbjct: 598 VYMWGRGSVKNPPIATLGNGTFDDQLLPQKVESLQEIVVISIGFYHSAAVKSNGELLTWG 657

Query: 206 NNEYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
             E GQLG GD    +QPIP  VQ ++   +  +  G  H+  LT +G+V+ WG  E+G+
Sbjct: 658 CGEDGQLGHGDV--FNQPIPKVVQSITSHWVTQVQCGEKHTICLTKNGKVFTWGTSEYGQ 715

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           LG GD  K+    P  V  L    I+Q++CG TH+  LT +  +  FG         G  
Sbjct: 716 LGLGDTQKNC--TPMLVTSLDKYHIIQIACGATHNAVLTNNREVLVFGN--------GAA 765

Query: 324 VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           + +   + +PI +P+ +     ++R      ++CG   T A+ E
Sbjct: 766 MGSANIISIPIMVPSLKIM--NIER------LSCGHYSTAALTE 801



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 81/308 (26%), Positives = 131/308 (42%), Gaps = 65/308 (21%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
           S   ++ WG GEDGQLG                                     G    +
Sbjct: 649 SNGELLTWGCGEDGQLG------------------------------------HGDVFNQ 672

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            IP  V ++++  + Q   G  H + +   G+ + WG +EYGQ G    +K+        
Sbjct: 673 PIPKVVQSITSHWVTQVQCGEKHTICLTKNGKVFTWGTSEYGQLGLGDTQKN-------- 724

Query: 123 DIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVR 175
                  C P L+       + Q+A G TH+ VLT    V  +G     G    IS+P+ 
Sbjct: 725 -------CTPMLVTSLDKYHIIQIACGATHNAVLTNNREVLVFGNGAAMGSANIISIPIM 777

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           V  L+   ++ ++ G +   AL E G ++ WG+ +  +LG G     + P  V+ L   +
Sbjct: 778 VPSLKIMNIERLSCGHYSTAALTECGDVYTWGSGQ--ELGHGHGTSEAHPKLVETLRNQS 835

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  I+ GG H   LTD G++Y  G+   G+LG    D++    P+K++ L     + +SC
Sbjct: 836 IRQISCGGRHMAFLTDSGKIYTSGKDPFGQLGHAAGDQNR---PKKIDSLLKTTFMSISC 892

Query: 294 GGTHSVAL 301
           G  H+ AL
Sbjct: 893 GENHNAAL 900



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 49/351 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR---SVVAGSRNSLAICDDG 57
           + ++  ++ WGSG   +LG   + E++     + L  + +    S+  GS  S A+ ++G
Sbjct: 538 LDTSRGLMTWGSGSYCKLGF-KSVEKDSQPTPERLPNFNISDICSISCGSYYSAALTENG 596

Query: 58  ------KTKTEN---------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAY 96
                 +   +N               +P +V +L   +IV  +IG +H  AV   G   
Sbjct: 597 DVYMWGRGSVKNPPIATLGNGTFDDQLLPQKVESLQ--EIVVISIGFYHSAAVKSNGELL 654

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
            WG  E GQ G         G +  + I    +      V QV  G  H++ LT+ G V+
Sbjct: 655 TWGCGEDGQLGH--------GDVFNQPIPKVVQSITSHWVTQVQCGEKHTICLTKNGKVF 706

Query: 157 TWGQP----WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYG 210
           TWG         GD ++   P+ V  L++  +I  A GA HN  L  +  +  +GN    
Sbjct: 707 TWGTSEYGQLGLGDTQKNCTPMLVTSLDKYHIIQIACGATHNAVLTNNREVLVFGNGA-- 764

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
               G     S PI V  L  + +  ++ G + + ALT+ G+VY WG G+   LG G   
Sbjct: 765 --AMGSANIISIPIMVPSLKIMNIERLSCGHYSTAALTECGDVYTWGSGQE--LGHGHG- 819

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            +S+  P+ V  L  + I Q+SCGG H   LT  G I++ G+   G+LG+ 
Sbjct: 820 -TSEAHPKLVETLRNQSIRQISCGGRHMAFLTDSGKIYTSGKDPFGQLGHA 869



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 31/192 (16%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD---IAAGGWHSTALTDDG 251
           L     L  WG+  Y +LG    +  SQP P + L    + D   I+ G ++S ALT++G
Sbjct: 538 LDTSRGLMTWGSGSYCKLGFKSVEKDSQPTP-ERLPNFNISDICSISCGSYYSAALTENG 596

Query: 252 EVYGWGRGEH-----GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +VY WGRG         LG G  D   +++PQKV  L  ++IV +S G  HS A+  +G 
Sbjct: 597 DVYMWGRGSVKNPPIATLGNGTFD--DQLLPQKVESL--QEIVVISIGFYHSAAVKSNGE 652

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           + ++G G+ G+LG+G             N P P+     +   W+ + V CG +HT+ + 
Sbjct: 653 LLTWGCGEDGQLGHGDV----------FNQPIPKVV-QSITSHWVTQ-VQCGEKHTICLT 700

Query: 367 E------WQTEE 372
           +      W T E
Sbjct: 701 KNGKVFTWGTSE 712



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 39/70 (55%)

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           +T L     +  WG G + +LGF   +K S+  P+++      DI  +SCG  +S ALT 
Sbjct: 535 ATQLDTSRGLMTWGSGSYCKLGFKSVEKDSQPTPERLPNFNISDICSISCGSYYSAALTE 594

Query: 304 DGHIFSFGRG 313
           +G ++ +GRG
Sbjct: 595 NGDVYMWGRG 604


>gi|393912010|gb|EJD76548.1| hect domain and RLD 4, variant [Loa loa]
          Length = 1017

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 144/301 (47%), Gaps = 35/301 (11%)

Query: 40  VRSVVAGSRNSLAICDDGKT-----------------KTENIPSQVNALSNTKIVQAAIG 82
           V++V +G +++L + +DGK                  +       V+  +  +I+Q + G
Sbjct: 49  VKAVASGEKHTLFLANDGKVWSCGSNYNGELGRGGVKEGSYTIYPVHISNAVRIIQISAG 108

Query: 83  GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142
             H +AV D GR +AWG N +GQ          +G IL  D   P+R        QVA G
Sbjct: 109 RSHSMAVSDDGRLFAWGSNSHGQLAM-------SGDILISD--TPKRVPSLPETVQVACG 159

Query: 143 GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA--FHNLALQEDGA 200
            +H+V L   G V+ WGQ    G I+    P  V+    V +I + A     +AL   G 
Sbjct: 160 ASHTVSLNGGGRVFIWGQQ-SDGRIRH--SPAEVELFVSVPIIQISAGNLFTMALTASGT 216

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           L+AWG NE GQLG    +    P  V  ++ + +V+   G  HS ALT +G V+  G   
Sbjct: 217 LFAWGRNEEGQLGNFTNRDVINPREVPNINSVVVVE--CGDSHSIALTHEGRVFSCGSDS 274

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
            G+LG G   +S   + + +  + G  + +++CG  H++ +  +G + +FG   +G+LG+
Sbjct: 275 FGQLGCGQPSRSQNCM-RGITEMLGSHVTRIACGRCHTIVVA-NGKMHTFGLNSNGQLGH 332

Query: 321 G 321
           G
Sbjct: 333 G 333



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 36/293 (12%)

Query: 79  AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ 138
            A G  H L + + G+ ++ G N  G+ G    ++           + P   +  + + Q
Sbjct: 52  VASGEKHTLFLANDGKVWSCGSNYNGELGRGGVKEGSY-------TIYPVHISNAVRIIQ 104

Query: 139 VAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
           ++AG +HS+ ++ +G ++ WG     Q    GDI     P RV  L +   +A GA H +
Sbjct: 105 ISAGRSHSMAVSDDGRLFAWGSNSHGQLAMSGDILISDTPKRVPSLPETVQVACGASHTV 164

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           +L   G ++ WG    G++       R  P  V+    + ++ I+AG   + ALT  G +
Sbjct: 165 SLNGGGRVFIWGQQSDGRI-------RHSPAEVELFVSVPIIQISAGNLFTMALTASGTL 217

Query: 254 YGWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           + WGR E G+LG F + D  +      +N      +V V CG +HS+ALT +G +FS G 
Sbjct: 218 FAWGRNEEGQLGNFTNRDVINPREVPNIN-----SVVVVECGDSHSIALTHEGRVFSCGS 272

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
              G+LG G+   +   M     +      G  V R      +ACG  HT+ +
Sbjct: 273 DSFGQLGCGQPSRSQNCMRGITEM-----LGSHVTR------IACGRCHTIVV 314



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 132/286 (46%), Gaps = 43/286 (15%)

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APK----LIVRQVAAGGTHSV 147
           + Y +G    GQ    P    +  +++    + P     AP     + V+ VA+G  H++
Sbjct: 5   QLYVFGCASDGQLAFRPNSAGNDAQMM----LFPHLVYGAPTGQHGVTVKAVASGEKHTL 60

Query: 148 VLTREGHVWTWGQPWP----PGDIKQISV---PVRVQGLEQVKLIAVGAFHNLALQEDGA 200
            L  +G VW+ G  +      G +K+ S    PV +    ++  I+ G  H++A+ +DG 
Sbjct: 61  FLANDGKVWSCGSNYNGELGRGGVKEGSYTIYPVHISNAVRIIQISAGRSHSMAVSDDGR 120

Query: 201 LWAWGNNEYGQLG-TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           L+AWG+N +GQL  +GD      P  V  L     V +A G  H+ +L   G V+ WG+ 
Sbjct: 121 LFAWGSNSHGQLAMSGDILISDTPKRVPSLP--ETVQVACGASHTVSLNGGGRVFIWGQQ 178

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             GR+         +  P +V L     I+Q+S G   ++ALT  G +F++GR + G+LG
Sbjct: 179 SDGRI---------RHSPAEVELFVSVPIIQISAGNLFTMALTASGTLFAWGRNEEGQLG 229

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                    P EVP NI +               +V CG  H++A+
Sbjct: 230 NFTNRDVINPREVP-NINS-------------VVVVECGDSHSIAL 261



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 48/243 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS------VVAGSRNSLAICDDGKT- 59
           + AWGS   GQL +  +       ++ +  P +V S      V  G+ +++++   G+  
Sbjct: 121 LFAWGSNSHGQLAMSGD-------ILISDTPKRVPSLPETVQVACGASHTVSLNGGGRVF 173

Query: 60  --------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   +  + P++V    +  I+Q + G    +A+   G  +AWG NE GQ      
Sbjct: 174 IWGQQSDGRIRHSPAEVELFVSVPIIQISAGNLFTMALTASGTLFAWGRNEEGQ------ 227

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS 171
                G    RD++ P+       V  V  G +HS+ LT EG V++ G         Q+ 
Sbjct: 228 ----LGNFTNRDVINPREVPNINSVVVVECGDSHSIALTHEGRVFSCGS----DSFGQLG 279

Query: 172 V--PVRVQGL---------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              P R Q             V  IA G  H + +  +G +  +G N  GQLG G+T+ +
Sbjct: 280 CGQPSRSQNCMRGITEMLGSHVTRIACGRCHTIVVA-NGKMHTFGLNSNGQLGHGNTRNQ 338

Query: 221 SQP 223
             P
Sbjct: 339 ITP 341



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 28/142 (19%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA---GSRNSLAICD 55
           MA T S  + AWG  E+GQLG   N +     V+   E   + SVV    G  +S+A+  
Sbjct: 209 MALTASGTLFAWGRNEEGQLGNFTNRD-----VINPREVPNINSVVVVECGDSHSIALTH 263

Query: 56  DGK-----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
           +G+                 ++++N    +  +  + + + A G  H + V + G+ + +
Sbjct: 264 EGRVFSCGSDSFGQLGCGQPSRSQNCMRGITEMLGSHVTRIACGRCHTIVVAN-GKMHTF 322

Query: 99  GGNEYGQCGEEPERKDDTGRIL 120
           G N  GQ G    R   T R++
Sbjct: 323 GLNSNGQLGHGNTRNQITPRMI 344


>gi|351698259|gb|EHB01178.1| Putative E3 ubiquitin-protein ligase HERC1, partial [Heterocephalus
            glaber]
          Length = 3493

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 161/346 (46%), Gaps = 63/346 (18%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
            +++A G G  G+LG GN+++   + V+ AL+ + V                         
Sbjct: 2672 TVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVV------------------------- 2706

Query: 66   SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE---EPERKDDTGRILRR 122
                    T++V +     H +A+ + G  ++WG  +YG+ G    + +R+      L+ 
Sbjct: 2707 --------TQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQG 2758

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            + V+           Q++ G  HS V+T +G ++T+G         G+     +P RV  
Sbjct: 2759 EEVV-----------QMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTA 2807

Query: 179  LEQVKL---------IAVGAFHNLALQEDGAL-WAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            LE  ++         +A G  H LA+  DG++ WA+G+ +YG+LG G++  +S P  V  
Sbjct: 2808 LEGYQIGQAWNKSYSVACGLNHTLAVSTDGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDV 2867

Query: 229  LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
            L G+ +  +A G   S ALT DG VY +G+     +G  +    +   PQ+V +LAG  I
Sbjct: 2868 LCGIGIKKVACGTQFSVALTKDGHVYTFGQDR--LIGLPEGRARNHNRPQQVPVLAGVVI 2925

Query: 289  VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
              V+ G  H++AL   G ++++G    G+LG G      +P  V +
Sbjct: 2926 EDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTV 2971



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 38/305 (12%)

Query: 78   QAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
            Q  I G +C   +   G   A G   YG+ G+     DD        + +       ++ 
Sbjct: 2655 QQVICGQNCTFVIQANGTVLACGEGSYGRLGQG--NSDDL-----HVLTVISALQGFVVT 2707

Query: 137  RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVG 188
            + V + G+  HS+ LT  G V++WG         G+  +   P +++ L  E+V  ++ G
Sbjct: 2708 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCG 2767

Query: 189  AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL-------VDIAAGG 241
              H+  +  DG L+ +GN +YG+LG G+T  +  P  V  L G  +         +A G 
Sbjct: 2768 FKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQAWNKSYSVACGL 2827

Query: 242  WHSTALTDDGE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
             H+ A++ DG  V+ +G G++G+LG G++  ++K  PQKV++L G  I +V+CG   SVA
Sbjct: 2828 NHTLAVSTDGSMVWAFGDGDYGKLGLGNS--TAKSSPQKVDVLCGIGIKKVACGTQFSVA 2885

Query: 301  LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
            LT+DGH+++FG+     L  GR     +P +VP+          GV    + + VA G  
Sbjct: 2886 LTKDGHVYTFGQDRLIGLPEGRARNHNRPQQVPVLA--------GV----VIEDVAVGAE 2933

Query: 361  HTLAI 365
            HTLA+
Sbjct: 2934 HTLAL 2938



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 144/289 (49%), Gaps = 42/289 (14%)

Query: 96   YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
            + WG   +GQ  E             R++++P         +QV  G   + V+   G V
Sbjct: 2625 FLWGAGRHGQLAEA-----------GRNVMVPAAAPSFSQAQQVICGQNCTFVIQANGTV 2673

Query: 156  WTWGQ-------PWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGN 206
               G+            D+  ++V   +QG    +L+       H++AL E G +++WG+
Sbjct: 2674 LACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGD 2733

Query: 207  NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
             +YG+LG G++  + +P  ++ L G  +V ++ G  HS  +T DG+++ +G G++GRLG 
Sbjct: 2734 GDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGL 2793

Query: 267  GDNDKSSKMVPQKVNLLAGEDIVQ-------VSCGGTHSVALTRDGH-IFSFGRGDHGRL 318
            G+   S+K +P++V  L G  I Q       V+CG  H++A++ DG  +++FG GD+G+L
Sbjct: 2794 GNT--SNKKLPERVTALEGYQIGQAWNKSYSVACGLNHTLAVSTDGSMVWAFGDGDYGKL 2851

Query: 319  GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            G G       P +V +        G G+      K VACG + ++A+ +
Sbjct: 2852 GLGNSTAKSSPQKVDV------LCGIGI------KKVACGTQFSVALTK 2888



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 40/280 (14%)

Query: 1    MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK 58
            MA T S  + +WG G+ G+LG GN++ +     ++AL+  +V  +  G ++S  +  DGK
Sbjct: 2720 MALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK 2779

Query: 59   ----------------TKTENIPSQVNALSNTKIVQA-------AIGGWHCLAVDDQGR- 94
                            T  + +P +V AL   +I QA       A G  H LAV   G  
Sbjct: 2780 LFTFGNGDYGRLGLGNTSNKKLPERVTALEGYQIGQAWNKSYSVACGLNHTLAVSTDGSM 2839

Query: 95   AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
             +A+G  +YG+ G        + +  + D++    C   + +++VA G   SV LT++GH
Sbjct: 2840 VWAFGDGDYGKLGLGNSTAKSSPQ--KVDVL----CG--IGIKKVACGTQFSVALTKDGH 2891

Query: 155  VWTWGQP----WPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNE 208
            V+T+GQ      P G  +  + P +V  L  V +  +AVGA H LAL   G ++AWG+N 
Sbjct: 2892 VYTFGQDRLIGLPEGRARNHNRPQQVPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNS 2951

Query: 209  YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             GQLG G T    +P  V  L G  +  I+AG  HS A T
Sbjct: 2952 EGQLGLGHTNHVREPTLVTVLQGKNIRQISAGRCHSAAWT 2991


>gi|380029875|ref|XP_003698590.1| PREDICTED: uncharacterized protein LOC100869963 [Apis florea]
          Length = 1858

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 82/238 (34%), Positives = 128/238 (53%), Gaps = 27/238 (11%)

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQISVPV-RVQGLEQVKLIAV-- 187
            R + AG +H V L R G+V+TWG          P  ++  S  V     + ++++++V  
Sbjct: 820  RPLCAGFSH-VALIRNGNVYTWGSSVQGCLGTGPSVLRYGSPQVISFFWIMEIEVLSVSC 878

Query: 188  GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
            G  H LA+  +G ++AWG++++GQLG G     S P  +  L+   ++D  AG +HS AL
Sbjct: 879  GHCHTLAVTNNG-VYAWGSSQFGQLGLGKILQCSTPELITSLAQEVIIDAVAGQYHSVAL 937

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            T DG V+ WG G HG+LG G+ DK  KM P  V  L G  I  ++ G  H++AL+ +G I
Sbjct: 938  TSDGRVFTWGWGVHGQLGHGNTDK--KMTPTLVTSLLGIVIRFITAGHAHTLALSTEGII 995

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG    G+LG G  + +  P++V ++             R I  L+A G  H LA+
Sbjct: 996  YAFGCNIFGQLGVGNNIKSSVPIKVSLS------------ERII--LIATGYFHNLAV 1039



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 163/386 (42%), Gaps = 75/386 (19%)

Query: 6    SIIAWGSGEDGQLGIGNNEERE---------WVCVVKALEPYKVRSVVAGSRNSLAICDD 56
            ++  WGS   G LG G +  R          W+  ++ L      SV  G  ++LA+ ++
Sbjct: 836  NVYTWGSSVQGCLGTGPSVLRYGSPQVISFFWIMEIEVL------SVSCGHCHTLAVTNN 889

Query: 57   G---------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
            G               K    + P  + +L+   I+ A  G +H +A+   GR + WG  
Sbjct: 890  GVYAWGSSQFGQLGLGKILQCSTPELITSLAQEVIIDAVAGQYHSVALTSDGRVFTWGWG 949

Query: 102  EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-- 159
             +GQ G     K  T  ++   + I        ++R + AG  H++ L+ EG ++ +G  
Sbjct: 950  VHGQLGHGNTDKKMTPTLVTSLLGI--------VIRFITAGHAHTLALSTEGIIYAFGCN 1001

Query: 160  ---QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
               Q     +IK  SVP++V   E++ LIA G FHNLA+     L+ WG +         
Sbjct: 1002 IFGQLGVGNNIKS-SVPIKVSLSERIILIATGYFHNLAVSCTNKLYIWGASPQVLRLQAQ 1060

Query: 217  TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGE--VYGWGRGEHGRLGFGDNDKSSK 274
            TQ R++ +  + +  L  +D       ST + D  E  +    + ++ +   G N +S +
Sbjct: 1061 TQKRTRILEQRDIKQLENIDEFEKVADSTNMNDTNEEVLENDAQNKNAQAKSGINTESRR 1120

Query: 275  MVPQKVNL-----------------------LAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
                 V L                       L   +I+Q+S G  H+  +T+DG ++++G
Sbjct: 1121 KQLDNVCLRNVNVGSLEETQTHLKPTIVDTSLVKGNIIQISTGCHHNALVTKDGSLYTWG 1180

Query: 312  RGDHGRLGYGRKVTTGQPMEVPINIP 337
            R   G++G G +       EVPI  P
Sbjct: 1181 RNLDGQIGNGSR------REVPIPTP 1200



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 76/326 (23%), Positives = 130/326 (39%), Gaps = 67/326 (20%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
            +   + AWGS + GQLG+G   +     ++ +L    +   VAG  +S+A+  DG+    
Sbjct: 887  TNNGVYAWGSSQFGQLGLGKILQCSTPELITSLAQEVIIDAVAGQYHSVALTSDGRVFTW 946

Query: 59   ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        T  +  P+ V +L    I     G  H LA+  +G  YA+G N +GQ 
Sbjct: 947  GWGVHGQLGHGNTDKKMTPTLVTSLLGIVIRFITAGHAHTLALSTEGIIYAFGCNIFGQL 1006

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
            G         G  ++  + I    + ++I+  +A G  H++ ++    ++ WG    P  
Sbjct: 1007 G--------VGNNIKSSVPIKVSLSERIIL--IATGYFHNLAVSCTNKLYIWGA--SPQV 1054

Query: 167  IK-QISVPVRVQGLEQ---VKLIAVGAFH------NLALQEDGALWAWGNNEYGQLGTG- 215
            ++ Q     R + LEQ    +L  +  F       N+    +  L     N+  Q  +G 
Sbjct: 1055 LRLQAQTQKRTRILEQRDIKQLENIDEFEKVADSTNMNDTNEEVLENDAQNKNAQAKSGI 1114

Query: 216  -----------------------DTQPRSQPIPVQ-GLSGLTLVDIAAGGWHSTALTDDG 251
                                   +TQ   +P  V   L    ++ I+ G  H+  +T DG
Sbjct: 1115 NTESRRKQLDNVCLRNVNVGSLEETQTHLKPTIVDTSLVKGNIIQISTGCHHNALVTKDG 1174

Query: 252  EVYGWGRGEHGRLGFGDNDKSSKMVP 277
             +Y WGR   G++G G    S + VP
Sbjct: 1175 SLYTWGRNLDGQIGNG----SRREVP 1196


>gi|118373349|ref|XP_001019868.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila]
 gi|89301635|gb|EAR99623.1| regulator of chromosome condensation (RCC1) [Tetrahymena
           thermophila SB210]
          Length = 403

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 159/345 (46%), Gaps = 43/345 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD------GKTK 60
           +  WG    G L     E++  +   K     K +SV  G     AI         G+TK
Sbjct: 28  LYTWGKNSSGCLA-NQKEDQGEIIPFKVKTNQKFKSVSTGGFFGAAISSKNELYTWGETK 86

Query: 61  TEN-----------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                         +P ++  L N  I   + G WHCLA+++Q + Y  G N+YG CG  
Sbjct: 87  NSRNGHQANKNYILVPQKIMNLQN--ISHVSCGNWHCLALNNQNQLYVTGHNKYGACGIS 144

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK- 168
               +  G  L   I   Q C+       ++AG   S+ L     V++ G     G+ + 
Sbjct: 145 G-IDEINGFQLNDTIKNIQICS-------ISAGDGFSLYLDINQQVYSSGFRQMHGNKED 196

Query: 169 ----QISVPVRVQGLEQVKLIAVGAFHN-LALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
               QI     ++G+  +K I  G  H+ +  QE G ++ WG+  + QLG G+T+ +  P
Sbjct: 197 QHQYQIKKIKELEGIA-IKHINAGFCHSAVVTQERGEVYTWGSGNFYQLGHGNTKSQKTP 255

Query: 224 IPVQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDN----DKSSKMVP 277
           + +  LSG+  V  + G    H+TA + DG+VY WG G  G+LG  ++    D + +  P
Sbjct: 256 LKINNLSGIEQVSCSRGEKYCHTTATSSDGKVYSWGSGYKGKLGHQNSWSHEDPADESRP 315

Query: 278 QKVNLLAGEDIV--QVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
           + +  L  + IV  +   GG HS  L++DG +F+FG G  GRLG+
Sbjct: 316 RPIQYLQEKGIVIAKSISGGIHSAVLSQDGRLFTFGCGSDGRLGH 360



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 19/246 (7%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G  Y WG N  G    +   K+D G I      IP +       + V+ GG     ++ +
Sbjct: 26  GFLYTWGKNSSGCLANQ---KEDQGEI------IPFKVKTNQKFKSVSTGGFFGAAISSK 76

Query: 153 GHVWTWGQPWPPGDIKQ-----ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
             ++TWG+     +  Q     I VP ++  L+ +  ++ G +H LAL     L+  G+N
Sbjct: 77  NELYTWGETKNSRNGHQANKNYILVPQKIMNLQNISHVSCGNWHCLALNNQNQLYVTGHN 136

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           +YG  G       +       +  + +  I+AG   S  L  + +VY  G     R   G
Sbjct: 137 KYGACGISGIDEINGFQLNDTIKNIQICSISAGDGFSLYLDINQQVYSSGF----RQMHG 192

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTT 326
           + +   +   +K+  L G  I  ++ G  HS  +T++ G ++++G G+  +LG+G   + 
Sbjct: 193 NKEDQHQYQIKKIKELEGIAIKHINAGFCHSAVVTQERGEVYTWGSGNFYQLGHGNTKSQ 252

Query: 327 GQPMEV 332
             P+++
Sbjct: 253 KTPLKI 258



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           +DG L+ WG N  G L     + + + IP +  +      ++ GG+   A++   E+Y W
Sbjct: 24  QDGFLYTWGKNSSGCLAN-QKEDQGEIIPFKVKTNQKFKSVSTGGFFGAAISSKNELYTW 82

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G  ++ R G   N K+  +VPQK+  L  ++I  VSCG  H +AL     ++  G   +G
Sbjct: 83  GETKNSRNGHQAN-KNYILVPQKIMNL--QNISHVSCGNWHCLALNNQNQLYVTGHNKYG 139

Query: 317 RLG 319
             G
Sbjct: 140 ACG 142


>gi|330837467|ref|YP_004412108.1| chromosome condensation regulator RCC1 [Sphaerochaeta coccoides DSM
           17374]
 gi|329749370|gb|AEC02726.1| regulator of chromosome condensation RCC1 [Sphaerochaeta coccoides
           DSM 17374]
          Length = 781

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 30/280 (10%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           K+   + GG+H L +   G  +A G NEYGQ G            +     +  +  P  
Sbjct: 419 KVKSVSAGGFHTLILKMDGTLWATGNNEYGQLG------------VGTSGTVNSKSTPVQ 466

Query: 135 IVRQVAA---GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL-EQVKLIA 186
           ++  VAA   G +H+++L  +G +W  G+        GD    S PV+V  +   V  ++
Sbjct: 467 VMTDVAAVSAGWSHTMILKNDGTLWATGRNKVGQLGVGDNTNRSTPVQVSSMGSDVAAVS 526

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV----DIAAGGW 242
            G  + + +++DG LWA G N  GQLG G T  R++P+ V+GL+G+  +    D+ AGG+
Sbjct: 527 TGESYTMIVKKDGTLWATGQNTAGQLGDGTTDDRNKPVQVKGLNGVGFMTDVEDVFAGGF 586

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG----EDIVQVSCGGTHS 298
           H+  L  +G ++  G    G+L   D   + +  P +V   +G     D+  VS G  H+
Sbjct: 587 HTMILKKNGTLWATGFNYFGQLC--DGTTTIRTTPVQVQDSSGVGFMTDVATVSAGWAHT 644

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338
           + L +DG +++ G+ + G+LG   K+    P +V  N+ +
Sbjct: 645 MILKKDGTLWAIGKNEQGQLGVSDKINRSTPAQVSSNVAS 684



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 144/297 (48%), Gaps = 35/297 (11%)

Query: 51  LAICDDGKTKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEE 109
           L +   G   +++ P QV        V A   GW H + + + G  +A G N+ GQ G  
Sbjct: 450 LGVGTSGTVNSKSTPVQV-----MTDVAAVSAGWSHTMILKNDGTLWATGRNKVGQLG-- 502

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
               D+T R         Q  +    V  V+ G ++++++ ++G +W  GQ        G
Sbjct: 503 --VGDNTNRSTP-----VQVSSMGSDVAAVSTGESYTMIVKKDGTLWATGQNTAGQLGDG 555

Query: 166 DIKQISVPVRVQGLEQVKLIA------VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                + PV+V+GL  V  +        G FH + L+++G LWA G N +GQL  G T  
Sbjct: 556 TTDDRNKPVQVKGLNGVGFMTDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLCDGTTTI 615

Query: 220 RSQPIPVQGLSG---LTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
           R+ P+ VQ  SG   +T V   + GW H+  L  DG ++  G+ E G+LG   +DK ++ 
Sbjct: 616 RTTPVQVQDSSGVGFMTDVATVSAGWAHTMILKKDGTLWAIGKNEQGQLGV--SDKINRS 673

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            P +V+     ++  VS G ++++ L +DG +++ G  D GRLG G       PM+V
Sbjct: 674 TPAQVS----SNVASVSAGESYTMILKKDGTLWATGSNDSGRLGVGDNNDRSSPMQV 726



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 48/343 (13%)

Query: 9   AWGSGEDGQLGIGN----NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------ 58
           A G+ E GQLG+G     N +   V V+       V +V AG  +++ + +DG       
Sbjct: 441 ATGNNEYGQLGVGTSGTVNSKSTPVQVMT-----DVAAVSAGWSHTMILKNDGTLWATGR 495

Query: 59  ----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                         + P QV+++  + +   + G  + + V   G  +A G N  GQ G+
Sbjct: 496 NKVGQLGVGDNTNRSTPVQVSSMG-SDVAAVSTGESYTMIVKKDGTLWATGQNTAGQLGD 554

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----P 164
                DD  + ++  +           V  V AGG H+++L + G +W  G  +      
Sbjct: 555 G--TTDDRNKPVQ--VKGLNGVGFMTDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLCD 610

Query: 165 GDIKQISVPVRVQG------LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
           G     + PV+VQ       +  V  ++ G  H + L++DG LWA G NE GQLG  D  
Sbjct: 611 GTTTIRTTPVQVQDSSGVGFMTDVATVSAGWAHTMILKKDGTLWAIGKNEQGQLGVSDKI 670

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
            RS P  V       +  ++AG  ++  L  DG ++  G  + GRLG GDN+  S   P 
Sbjct: 671 NRSTPAQVSS----NVASVSAGESYTMILKKDGTLWATGSNDSGRLGVGDNNDRSS--PM 724

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           +V+ + G D+  VS G  H++ L ++G +++ G    G+LG G
Sbjct: 725 QVSSM-GSDVAAVSAG-FHTMILKKNGTLWATGYNFLGQLGLG 765



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 106/191 (55%), Gaps = 20/191 (10%)

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDI 237
           + +VK ++ G FH L L+ DG LWA GNNEYGQLG G +    S+  PVQ      + D+
Sbjct: 417 MVKVKSVSAGGFHTLILKMDGTLWATGNNEYGQLGVGTSGTVNSKSTPVQ-----VMTDV 471

Query: 238 AA--GGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           AA   GW H+  L +DG ++  GR + G+LG GDN  +++  P +V+ + G D+  VS G
Sbjct: 472 AAVSAGWSHTMILKNDGTLWATGRNKVGQLGVGDN--TNRSTPVQVSSM-GSDVAAVSTG 528

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
            ++++ + +DG +++ G+   G+LG G      +P++V           +GV      + 
Sbjct: 529 ESYTMIVKKDGTLWATGQNTAGQLGDGTTDDRNKPVQVK--------GLNGVGFMTDVED 580

Query: 355 VACGGRHTLAI 365
           V  GG HT+ +
Sbjct: 581 VFAGGFHTMIL 591



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 44/302 (14%)

Query: 10  WGSGED--GQLGIGNNEEREW----------VCVVKALEPY-----KVRSVVAGSRNSLA 52
           W +G +  GQLG+G+N  R            V  V   E Y     K  ++ A  +N+  
Sbjct: 491 WATGRNKVGQLGVGDNTNRSTPVQVSSMGSDVAAVSTGESYTMIVKKDGTLWATGQNTAG 550

Query: 53  ICDDGKTKTENIPSQVNALSN----TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ-CG 107
              DG T   N P QV  L+     T +     GG+H + +   G  +A G N +GQ C 
Sbjct: 551 QLGDGTTDDRNKPVQVKGLNGVGFMTDVEDVFAGGFHTMILKKNGTLWATGFNYFGQLC- 609

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLI--VRQVAAGGTHSVVLTREGHVWTWGQ----P 161
                 D T  I    + +        +  V  V+AG  H+++L ++G +W  G+     
Sbjct: 610 ------DGTTTIRTTPVQVQDSSGVGFMTDVATVSAGWAHTMILKKDGTLWAIGKNEQGQ 663

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
               D    S P +V     V  ++ G  + + L++DG LWA G+N+ G+LG GD   RS
Sbjct: 664 LGVSDKINRSTPAQVS--SNVASVSAGESYTMILKKDGTLWATGSNDSGRLGVGDNNDRS 721

Query: 222 QPIPVQGLSGLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK-SSKMVPQ 278
            P+ V  +      D+AA   G+H+  L  +G ++  G    G+LG GD+   + +  P+
Sbjct: 722 SPMQVSSMGS----DVAAVSAGFHTMILKKNGTLWATGYNFLGQLGLGDSGSGTDRSTPE 777

Query: 279 KV 280
           +V
Sbjct: 778 QV 779



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 16/221 (7%)

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW-------PPGDIKQISVPVR 175
           D+ +  +    + V+ V+AGG H+++L  +G +W  G            G +   S PV+
Sbjct: 407 DVTLYAQWKVMVKVKSVSAGGFHTLILKMDGTLWATGNNEYGQLGVGTSGTVNSKSTPVQ 466

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           V  +  V  ++ G  H + L+ DG LWA G N+ GQLG GD   RS P+ V  + G  + 
Sbjct: 467 V--MTDVAAVSAGWSHTMILKNDGTLWATGRNKVGQLGVGDNTNRSTPVQVSSM-GSDVA 523

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG----EDIVQV 291
            ++ G  ++  +  DG ++  G+   G+LG G  D  +K  P +V  L G     D+  V
Sbjct: 524 AVSTGESYTMIVKKDGTLWATGQNTAGQLGDGTTDDRNK--PVQVKGLNGVGFMTDVEDV 581

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             GG H++ L ++G +++ G    G+L  G       P++V
Sbjct: 582 FAGGFHTMILKKNGTLWATGFNYFGQLCDGTTTIRTTPVQV 622


>gi|270001313|gb|EEZ97760.1| hect domain and RLD 2-like protein [Tribolium castaneum]
          Length = 816

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 16/203 (7%)

Query: 127 PQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKL 184
           PQ C    +L ++Q+       ++LT+ G V+     +   D +    P  +  L+  ++
Sbjct: 462 PQNCDTLSELTIKQICCSDRTILILTQTGKVFFM---YYSSDTQ---CPQEMTALDDKEV 515

Query: 185 IAVGAF----HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           I + A     H LAL +D  +++WGN + G+LG GDT  + +P  +Q L G  ++D+  G
Sbjct: 516 IKIAAHPEGKHYLALTKDYEVYSWGNGDGGRLGHGDTSTKEEPTLIQALKGKDIIDVECG 575

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THS 298
           G +S A++ +G +Y WGRG +GRLG G  +    + P  ++ L+ E I++V+CG    H+
Sbjct: 576 GTYSAAISANGALYTWGRGNYGRLGHGTAEDC--LTPTMISALSDEHIIKVACGSFYAHT 633

Query: 299 VALTRDGHIFSFGRGDHGRLGYG 321
           + +T  G ++S+G GD+G+LG G
Sbjct: 634 LCITSQGKVYSWGDGDYGKLGRG 656



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 38/311 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P   + LS   I Q        L +   G+ +    +   QC +E    DD         
Sbjct: 462 PQNCDTLSELTIKQICCSDRTILILTQTGKVFFMYYSSDTQCPQEMTALDDKE------- 514

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
           VI     P+         G H + LT++  V++WG         GD      P  +Q L+
Sbjct: 515 VIKIAAHPE---------GKHYLALTKDYEVYSWGNGDGGRLGHGDTSTKEEPTLIQALK 565

Query: 181 QVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238
              +I V  G  ++ A+  +GAL+ WG   YG+LG G  +    P  +  LS   ++ +A
Sbjct: 566 GKDIIDVECGGTYSAAISANGALYTWGRGNYGRLGHGTAEDCLTPTMISALSDEHIIKVA 625

Query: 239 AGGW--HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
            G +  H+  +T  G+VY WG G++G+LG G +D S   +P+ +  L    IVQV CG  
Sbjct: 626 CGSFYAHTLCITSQGKVYSWGDGDYGKLGRGGSDGSK--LPRLIEKLQNVKIVQVYCGAQ 683

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
            SVAL+ DGH++++G+G+  +LG+        P E   N+  P       DR+ +   V+
Sbjct: 684 FSVALSEDGHVYTWGKGEGWKLGH--------PTEE--NVRFPEMVEVLRDRKVVG--VS 731

Query: 357 CGGRHTLAIVE 367
            G  H LA+ +
Sbjct: 732 LGVSHVLALTD 742



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 26/312 (8%)

Query: 34  ALEPYKVRSVVAGSRNSLAICDDGK------TKTENIPSQVNALSNTKIVQAAIG--GWH 85
            L    ++ +    R  L +   GK      +     P ++ AL + ++++ A    G H
Sbjct: 467 TLSELTIKQICCSDRTILILTQTGKVFFMYYSSDTQCPQEMTALDDKEVIKIAAHPEGKH 526

Query: 86  CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145
            LA+      Y+WG  + G+ G       DT    + +  + Q    K I+  V  GGT+
Sbjct: 527 YLALTKDYEVYSWGNGDGGRLGH-----GDTST--KEEPTLIQALKGKDII-DVECGGTY 578

Query: 146 SVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAF--HNLALQE 197
           S  ++  G ++TWG+        G  +    P  +  L  E +  +A G+F  H L +  
Sbjct: 579 SAAISANGALYTWGRGNYGRLGHGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCITS 638

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
            G +++WG+ +YG+LG G +     P  ++ L  + +V +  G   S AL++DG VY WG
Sbjct: 639 QGKVYSWGDGDYGKLGRGGSDGSKLPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVYTWG 698

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +GE  +LG    +      P+ V +L    +V VS G +H +ALT  G ++ +G+ ++ +
Sbjct: 699 KGEGWKLGHPTEENVR--FPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENKQ 756

Query: 318 LGYGRKVTTGQP 329
           +    ++   QP
Sbjct: 757 ICDSSELFVQQP 768



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 32/270 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG+G+ G+LG G+   +E   +++AL+   +  V  G   S AI  +G   T     
Sbjct: 536 VYSWGNGDGGRLGHGDTSTKEEPTLIQALKGKDIIDVECGGTYSAAISANGALYTWGRGN 595

Query: 62  ---------ENI--PSQVNALSNTKIVQAAIGGW--HCLAVDDQGRAYAWGGNEYGQCGE 108
                    E+   P+ ++ALS+  I++ A G +  H L +  QG+ Y+WG  +YG+ G 
Sbjct: 596 YGRLGHGTAEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGKVYSWGDGDYGKLG- 654

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGD 166
              R    G  L R I   Q       + QV  G   SV L+ +GHV+TWG  + W  G 
Sbjct: 655 ---RGGSDGSKLPRLIEKLQNVK----IVQVYCGAQFSVALSEDGHVYTWGKGEGWKLGH 707

Query: 167 IKQ--ISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
             +  +  P  V+ L   K++ V  G  H LAL + G ++ WG NE  Q+         Q
Sbjct: 708 PTEENVRFPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENKQICDSSELFVQQ 767

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           P  ++ L G  +V +  G   S A TDD E
Sbjct: 768 PRLIEALKGQKVVGVCCGPAQSFAWTDDNE 797



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 22/260 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G T T+  P+ + AL    I+    GG +  A+   G  Y WG   YG+ G        T
Sbjct: 550 GDTSTKEEPTLIQALKGKDIIDVECGGTYSAAISANGALYTWGRGNYGRLGH------GT 603

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
                   +I       +I     +   H++ +T +G V++WG     GD  ++      
Sbjct: 604 AEDCLTPTMISALSDEHIIKVACGSFYAHTLCITSQGKVYSWGD----GDYGKLGRGGSD 659

Query: 171 --SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
              +P  ++ L+ VK++ V  GA  ++AL EDG ++ WG  E  +LG    +    P  V
Sbjct: 660 GSKLPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVYTWGKGEGWKLGHPTEENVRFPEMV 719

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L    +V ++ G  H  ALTD GEVYGWG+ E+ ++   D+ +     P+ +  L G+
Sbjct: 720 EVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENKQI--CDSSELFVQQPRLIEALKGQ 777

Query: 287 DIVQVSCGGTHSVALTRDGH 306
            +V V CG   S A T D  
Sbjct: 778 KVVGVCCGPAQSFAWTDDNE 797



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   + +WG G+ G+LG G ++  +   +++ L+  K+  V  G++ S+A+ +DG   
Sbjct: 636 ITSQGKVYSWGDGDYGKLGRGGSDGSKLPRLIEKLQNVKIVQVYCGAQFSVALSEDGHVY 695

Query: 61  T--------------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
           T              EN+  P  V  L + K+V  ++G  H LA+ DQG  Y WG NE  
Sbjct: 696 TWGKGEGWKLGHPTEENVRFPEMVEVLRDRKVVGVSLGVSHVLALTDQGEVYGWGKNENK 755

Query: 105 QCGEEPE 111
           Q  +  E
Sbjct: 756 QICDSSE 762


>gi|18076889|emb|CAC86115.1| retinitis pigmentosa GTPase regulator [Mus musculus]
          Length = 1001

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 141/307 (45%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 78  PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 134 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG       +   P Q + G+   ++ +A
Sbjct: 191 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPSELLMNHRSP-QRVLGIPERVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGGHTVVLTEKV-VYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 308 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 357

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 358 GCHMLVF 364



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 40  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 98

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS-GLTLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 99  TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 158

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 159 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 214

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 215 GEPENGKLGL--------PSELLMNHRSPQRVL-GIPERVIQ--VACGGGHTVVLTE 260



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 148/329 (44%), Gaps = 40/329 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 69  --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 120

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 121 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG       +   PQ+V
Sbjct: 179 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPSELLMNHRSPQRV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 239 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 289

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
               + +  + I   ++CG  HT  + E 
Sbjct: 290 ----ERIKDQKICH-ISCGENHTALMTEL 313


>gi|295789061|ref|NP_001171424.1| X-linked retinitis pigmentosa GTPase regulator isoform 5 [Mus
           musculus]
 gi|26332729|dbj|BAC30082.1| unnamed protein product [Mus musculus]
          Length = 557

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 142/307 (46%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G      D   R     I
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG----LGDTDDRDTFHQI 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
           V      P   ++Q++AG   S  LT +G ++ WG          D   + +P  V   +
Sbjct: 172 VF---FTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTVGK 228

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +A
Sbjct: 229 PISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSP-QRVLGIPERVIQVA 287

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 288 CGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE-PKIIERIKDQKICHISCGENHT 345

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G +  T Q          P    + +  R+  +L+ACG
Sbjct: 346 ALMTELGLLYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--RFAVQLIACG 395

Query: 359 GRHTLAI 365
           G H L  
Sbjct: 396 GCHMLVF 402



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 122/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    I  P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKAAIIKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-TLVDIAAGGWHSTALTDD 250
            L   + G ++A G N  GQLG GDT  R     +   +   T+  ++AG   S ALT+D
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTED 196

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+++ WG    G++G    DKS+  +P +V +  G+ I  +SCG  HS  +T DG +++F
Sbjct: 197 GKLFMWGDNSEGQIGL--EDKSNVCIPHEVTV--GKPISWISCGYYHSAFVTMDGELYTF 252

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  ++G+LG         P E+ +N  +P+    G+  R I   VACGG HT+ + E
Sbjct: 253 GEPENGKLGL--------PNELLMNHRSPQRV-LGIPERVIQ--VACGGGHTVVLTE 298



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 149/328 (45%), Gaps = 40/328 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GKTK  ENIPS+     N   +  + G  H   V    + Y +G N +GQ G   
Sbjct: 51  AVFTFGKTKFAENIPSKF-WFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLG--- 106

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQPWP---- 163
                   +  +  +I   C   L    V+  A G  H++V T  G V+  G        
Sbjct: 107 --------LGSKAAIIKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLG 158

Query: 164 ---PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                D       V     + +K ++ GA  + AL EDG L+ WG+N  GQ+G  D    
Sbjct: 159 LGDTDDRDTFHQIVFFTPADTIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKS-- 216

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  IP +   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ+V
Sbjct: 217 NVCIPHEVTVGKPISWISCGYYHSAFVTMDGELYTFGEPENGKLGLPNELLMNHRSPQRV 276

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT-TGQPMEVPINIPAP 339
            L   E ++QV+CGG H+V LT +  +++FG G  G+LG G  +  T +P  +       
Sbjct: 277 -LGIPERVIQVACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKII------- 327

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
               + +  + I   ++CG  HT  + E
Sbjct: 328 ----ERIKDQKICH-ISCGENHTALMTE 350


>gi|383319150|ref|YP_005379991.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
 gi|379320520|gb|AFC99472.1| Alpha-tubulin suppressor and related RCC1 domain-containing protein
           [Methanocella conradii HZ254]
          Length = 461

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 135/305 (44%), Gaps = 37/305 (12%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S+  ++  + G  HCLA+   G   AWG N++GQ G+       T          P +  
Sbjct: 24  SSPSVISISAGASHCLALTSDGSVLAWGNNDHGQLGDGTTVSAST----------PVKAK 73

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
               V  +AAG +HS+ L  +G VW WG  +      G  +    PV+V GL  VK I+ 
Sbjct: 74  GLTHVVAIAAGASHSLALKDDGTVWAWGDNYNGNLGDGTTEDRLTPVQVVGLTNVKAISA 133

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G   + AL++DG LWAWG N  G LG G  + R    PVQ      +V I   G  + A+
Sbjct: 134 GIMTSFALKDDGTLWAWGANSRGDLGDGTLEDRLT--PVQAKVPAKVVKIGHKG--TFAV 189

Query: 248 TDDGEVYGWGRGEHGRLG-------FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
           TDDG+V+ WG       G        GDN    +  P +V       + +++ G  H V 
Sbjct: 190 TDDGDVWAWGNNVIIVFGNDSICGMLGDNYGQVRPTPFRVE--QPSSVKEITNGLEHVVF 247

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           +  DG ++++G  D G+LG   K+        P+      N  D          V+ G  
Sbjct: 248 IKDDGTVWTWGLNDKGQLGNNAKIDDKTVTTTPVKALGINNVKD----------VSAGYY 297

Query: 361 HTLAI 365
           ++LA+
Sbjct: 298 YSLAL 302



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 164/357 (45%), Gaps = 63/357 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           + S  S++AWG+ + GQLG G          VKA     V ++ AG+ +SLA+ DDG   
Sbjct: 41  LTSDGSVLAWGNNDHGQLGDGTTVSAS--TPVKAKGLTHVVAIAAGASHSLALKDDGTVW 98

Query: 59  --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         T+    P QV  L+N K + A I      A+ D G  +AWG N  G
Sbjct: 99  AWGDNYNGNLGDGTTEDRLTPVQVVGLTNVKAISAGI--MTSFALKDDGTLWAWGANSRG 156

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP--- 161
             G+        G +  R   +  +   K++  ++   GT +V  T +G VW WG     
Sbjct: 157 DLGD--------GTLEDRLTPVQAKVPAKVV--KIGHKGTFAV--TDDGDVWAWGNNVII 204

Query: 162 ---------WPPGDIKQI-SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
                        +  Q+   P RV+    VK I  G  H + +++DG +W WG N+ GQ
Sbjct: 205 VFGNDSICGMLGDNYGQVRPTPFRVEQPSSVKEITNGLEHVVFIKDDGTVWTWGLNDKGQ 264

Query: 212 LGTG----DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH---GRL 264
           LG      D    + P+   G++ +   D++AG ++S AL DDG V+ WG   +     L
Sbjct: 265 LGNNAKIDDKTVTTTPVKALGINNVK--DVSAGYYYSLALKDDGSVWKWGEDYYTIPNML 322

Query: 265 GFGDNDKSSKMV--PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           G       SK+V  P+++  L+G  I+ +S G    +AL  DG ++ +G  ++G+LG
Sbjct: 323 GV-----YSKLVSAPEQIGGLSG--IIAISSGNYFYIALKNDGSVWGWGYNENGQLG 372



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 43/237 (18%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--------- 59
           AWG+   G LG G  E+R  +  V+A  P KV  +  G + + A+ DDG           
Sbjct: 149 AWGANSRGDLGDGTLEDR--LTPVQAKVPAKVVKI--GHKGTFAVTDDGDVWAWGNNVII 204

Query: 60  ----------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +    P +V   S+ K +   +   H + + D G  + WG N+ 
Sbjct: 205 VFGNDSICGMLGDNYGQVRPTPFRVEQPSSVKEITNGLE--HVVFIKDDGTVWTWGLNDK 262

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQ G   +  D T          P +      V+ V+AG  +S+ L  +G VW WG+ + 
Sbjct: 263 GQLGNNAKIDDKTVT------TTPVKALGINNVKDVSAGYYYSLALKDDGSVWKWGEDYY 316

Query: 164 --PGDI----KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT 214
             P  +    K +S P ++ GL  +  I+ G +  +AL+ DG++W WG NE GQLG+
Sbjct: 317 TIPNMLGVYSKLVSAPEQIGGLSGIIAISSGNYFYIALKNDGSVWGWGYNENGQLGS 373


>gi|150026491|ref|YP_001297317.1| RCC1 repeat-containing protein [Flavobacterium psychrophilum
           JIP02/86]
 gi|149773032|emb|CAL44516.1| RCC1 (Regulator of Chromosome Condensation) repeat domain protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 456

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 36/289 (12%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGE--EPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           GG H L +   G  ++WG N +GQ G    P    +          IP +       + +
Sbjct: 28  GGSHSLGIRTGGTLWSWGRNYFGQLGTAGTPATFSN----------IPIQVGTATNWQTI 77

Query: 140 AAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           AAG  H+V +   G +WTWG         G     ++P+++      + I  G  + +A+
Sbjct: 78  AAGNAHNVAIKTNGTLWTWGHNQASQLGDGSTTNSNIPIQIGTATNWRFITAGDEYVIAI 137

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
           + DG LWAWG+N YGQL  GD    ++ +P Q  S    + ++AG  H+ A   +G ++ 
Sbjct: 138 KLDGTLWAWGDNTYGQL--GDNTTVNKIVPTQIGSDTDWLLVSAGTNHTLATKTNGTLWA 195

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WGR   G+L  GDN   +K++P ++   A  D   V     HS A   DG I+++G   +
Sbjct: 196 WGRNNTGQL--GDNTTLNKIIPTQIG--ADSDWQNVMASILHSAATKSDGSIWTWGNNTN 251

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G+LG G  V       +P+NI    N        WIAK    G +HT+A
Sbjct: 252 GQLGDGTVV----GKIIPVNITTVTNC------NWIAK----GHQHTIA 286



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 41/359 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ +WG    GQLG            ++       +++ AG+ +++AI            
Sbjct: 40  TLWSWGRNYFGQLGTAGTPATFSNIPIQVGTATNWQTIAAGNAHNVAIKTNGTLWTWGHN 99

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T   NIP Q+   +N + + A  G  + +A+   G  +AWG N YGQ G+ 
Sbjct: 100 QASQLGDGSTTNSNIPIQIGTATNWRFITA--GDEYVIAIKLDGTLWAWGDNTYGQLGDN 157

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PWPPGDI 167
                          ++P +         V+AG  H++     G +W WG+      GD 
Sbjct: 158 TTVNK----------IVPTQIGSDTDWLLVSAGTNHTLATKTNGTLWAWGRNNTGQLGDN 207

Query: 168 KQIS--VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
             ++  +P ++      + +     H+ A + DG++W WGNN  GQLG G    +  P+ 
Sbjct: 208 TTLNKIIPTQIGADSDWQNVMASILHSAATKSDGSIWTWGNNTNGQLGDGTVVGKIIPVN 267

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           +  ++      IA G  H+ A   DG ++ WG    G+LG  D   + K  P  V+ L  
Sbjct: 268 ITTVTNCNW--IAKGHQHTIAKKSDGSLWAWGGNASGQLG--DASTTQKNSPVAVSGLT- 322

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
            D + V+   +H++AL  DG ++++G   +G+LG    +      ++P  I  P  A D
Sbjct: 323 TDWLTVNSKLSHTIALKNDGTLYTWGANLYGQLGDASNI----AKDIPTLITCPFLAID 377



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 108/204 (52%), Gaps = 16/204 (7%)

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQISVPVRVQGLEQVKLIAVG 188
           + V+AGG+HS+ +   G +W+WG+ +         P     I  P++V      + IA G
Sbjct: 23  QSVSAGGSHSLGIRTGGTLWSWGRNYFGQLGTAGTPATFSNI--PIQVGTATNWQTIAAG 80

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
             HN+A++ +G LW WG+N+  QLG G T   +  IP+Q  +      I AG  +  A+ 
Sbjct: 81  NAHNVAIKTNGTLWTWGHNQASQLGDGST--TNSNIPIQIGTATNWRFITAGDEYVIAIK 138

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            DG ++ WG   +G+L  GDN   +K+VP ++   +  D + VS G  H++A   +G ++
Sbjct: 139 LDGTLWAWGDNTYGQL--GDNTTVNKIVPTQIG--SDTDWLLVSAGTNHTLATKTNGTLW 194

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEV 332
           ++GR + G+LG    +    P ++
Sbjct: 195 AWGRNNTGQLGDNTTLNKIIPTQI 218



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 18/180 (10%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           ++ G  H+L ++  G LW+WG N +GQLGT  T      IP+Q  +      IAAG  H+
Sbjct: 25  VSAGGSHSLGIRTGGTLWSWGRNYFGQLGTAGTPATFSNIPIQVGTATNWQTIAAGNAHN 84

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            A+  +G ++ WG  +  +LG G    S+  +P ++      +   ++ G  + +A+  D
Sbjct: 85  VAIKTNGTLWTWGHNQASQLGDGSTTNSN--IPIQIG--TATNWRFITAGDEYVIAIKLD 140

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++++G   +G+LG    V    P ++            G D  W+  LV+ G  HTLA
Sbjct: 141 GTLWAWGDNTYGQLGDNTTVNKIVPTQI------------GSDTDWL--LVSAGTNHTLA 186



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           ++AGG HS  +   G ++ WGR   G+LG      +   +P +V      +   ++ G  
Sbjct: 25  VSAGGSHSLGIRTGGTLWSWGRNYFGQLGTAGTPATFSNIPIQVG--TATNWQTIAAGNA 82

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H+VA+  +G ++++G     +LG G    +  P+++            G    W  + + 
Sbjct: 83  HNVAIKTNGTLWTWGHNQASQLGDGSTTNSNIPIQI------------GTATNW--RFIT 128

Query: 357 CGGRHTLAI 365
            G  + +AI
Sbjct: 129 AGDEYVIAI 137


>gi|403364753|gb|EJY82151.1| RCC1 domain containing protein [Oxytricha trifallax]
          Length = 1344

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 135/288 (46%), Gaps = 25/288 (8%)

Query: 65  PSQVNALSNTK-IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P+ +    +TK I Q A G  H LA+ +    ++WG  +YG  G     +DD   I    
Sbjct: 279 PTAIKFPKHTKPITQVACGSAHILAITEDSELFSWGSGQYGALGFGT--RDD---IFEPR 333

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
            +I ++      +  +A G  HS+ LTR+  + TWGQ        GD   + VP  +  L
Sbjct: 334 HLIIEKKDYTYFIEGIACGKYHSMCLTRKKKILTWGQGQGGRLGHGDEDDVLVPKEIYDL 393

Query: 180 EQVK--LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
            + K   I+ G  H+ A+ E   L+ WG   YG+LG G      +P  ++ L    ++ +
Sbjct: 394 SKKKPIFISAGESHSAAISEKLNLYTWGTGTYGRLGHGMDTSEKKPKLIEDLDQYEIIHV 453

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGF------GDNDKSSKMVPQKVNLLAGEDIVQ- 290
           + G +H+ A+T  G VY +G+G++G+LG       G   +  K+   KV +   E +VQ 
Sbjct: 454 SCGAFHTLAITGQGTVYAFGQGKYGKLGINRKQREGVFSRPEKISFYKVGVEPQEMLVQD 513

Query: 291 ------VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                  + G  HS+ L + G I+S+G    G LG  +      P+E+
Sbjct: 514 KNEAILAAAGYNHSLCLAKSGKIYSWGYNGKGLLGRQKGFEEHLPIEI 561



 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 190/447 (42%), Gaps = 98/447 (21%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           I+ WG G+ G+LG G+ ++      +  L   K   + AG  +S AI +           
Sbjct: 365 ILTWGQGQGGRLGHGDEDDVLVPKEIYDLSKKKPIFISAGESHSAAISEKLNLYTWGTGT 424

Query: 57  ------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                 G   +E  P  +  L   +I+  + G +H LA+  QG  YA+G  +YG+ G   
Sbjct: 425 YGRLGHGMDTSEKKPKLIEDLDQYEIIHVSCGAFHTLAITGQGTVYAFGQGKYGKLG--I 482

Query: 111 ERKDDTGRILRRDIVIPQRCA--PKLIVRQ-------VAAGGTHSVVLTREGHVWTWG-- 159
            RK   G   R + +   +    P+ ++ Q        AAG  HS+ L + G +++WG  
Sbjct: 483 NRKQREGVFSRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLCLAKSGKIYSWGYN 542

Query: 160 -----------QPWPPGDIKQI------SVP-----VRVQGLEQ-------VKLIAVGAF 190
                      +   P +I QI       +P     ++   L+Q       V  +A G  
Sbjct: 543 GKGLLGRQKGFEEHLPIEIGQIPGELIGKIPNIDELIQRGDLKQEETFSYEVIQVACGVL 602

Query: 191 HNLALQEDGALWAWGNNEYGQLGTG------------------------DTQPRSQPIPV 226
           + ++L   G ++ +G+N YGQL                           D+  +   I  
Sbjct: 603 NTVSLTNGGEVYVFGSNAYGQLAKDKDQTTFRKYKKQDQNNNNDNSQALDSSEQMSLIKF 662

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG-DNDKSSKMVPQKVNLLAG 285
            G + + +  IA GG H  A++   E++GWGR + G+LG G  +D +++  P  +  +A 
Sbjct: 663 PGETTVRINYIACGGEHIFAISRMNELFGWGRNDEGQLGLGFVSDFTAE--PTLIRQIAH 720

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGD 344
           ++I  ++CG  +S A++  G +F  G  ++G+LG G+ +  G  +    I   AP     
Sbjct: 721 KNIQMIACGDNYSAAVSAFGELFVTGNLENGKLGLGQALKKGFLLSFTLIQNLAP----- 775

Query: 345 GVDRRWIAKLVACGGRHTLAIVEWQTE 371
                   K VACG  H LAI ++  +
Sbjct: 776 -------IKSVACGPNHMLAIADYNPD 795



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 107/200 (53%), Gaps = 22/200 (11%)

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT----QPRSQPIP 225
           I  P   + + QV   A G+ H LA+ ED  L++WG+ +YG LG G      +PR   I 
Sbjct: 282 IKFPKHTKPITQV---ACGSAHILAITEDSELFSWGSGQYGALGFGTRDDIFEPRHLIIE 338

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            +  +   +  IA G +HS  LT   ++  WG+G+ GRLG GD D    +VP+++  L+ 
Sbjct: 339 KKDYTYF-IEGIACGKYHSMCLTRKKKILTWGQGQGGRLGHGDEDDV--LVPKEIYDLSK 395

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           +  + +S G +HS A++   +++++G G +GRLG+G   +  +P  +           + 
Sbjct: 396 KKPIFISAGESHSAAISEKLNLYTWGTGTYGRLGHGMDTSEKKPKLI-----------ED 444

Query: 346 VDRRWIAKLVACGGRHTLAI 365
           +D+  I   V+CG  HTLAI
Sbjct: 445 LDQYEIIH-VSCGAFHTLAI 463



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 95/415 (22%), Positives = 160/415 (38%), Gaps = 117/415 (28%)

Query: 5   TSIIAWGSGEDGQLGIGNNE---EREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT 61
           + + +WGSG+ G LG G  +   E   + + K    Y +  +  G  +S+ +    K  T
Sbjct: 308 SELFSWGSGQYGALGFGTRDDIFEPRHLIIEKKDYTYFIEGIACGKYHSMCLTRKKKILT 367

Query: 62  EN----------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                             +P ++  LS  K +  + G  H  A+ ++   Y WG   YG+
Sbjct: 368 WGQGQGGRLGHGDEDDVLVPKEIYDLSKKKPIFISAGESHSAAISEKLNLYTWGTGTYGR 427

Query: 106 CG---EEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHV 155
            G   +  E+K                  PKLI       +  V+ G  H++ +T +G V
Sbjct: 428 LGHGMDTSEKK------------------PKLIEDLDQYEIIHVSCGAFHTLAITGQGTV 469

Query: 156 WTWGQP----------------WPPGDIKQISVPVR-----VQGLEQVKLIAVGAFHNLA 194
           + +GQ                   P  I    V V      VQ   +  L A G  H+L 
Sbjct: 470 YAFGQGKYGKLGINRKQREGVFSRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLC 529

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG----------------------- 231
           L + G +++WG N  G LG         PI +  + G                       
Sbjct: 530 LAKSGKIYSWGYNGKGLLGRQKGFEEHLPIEIGQIPGELIGKIPNIDELIQRGDLKQEET 589

Query: 232 --LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM-------------- 275
               ++ +A G  ++ +LT+ GEVY +G   +G+L   D D+++                
Sbjct: 590 FSYEVIQVACGVLNTVSLTNGGEVYVFGSNAYGQLA-KDKDQTTFRKYKKQDQNNNNDNS 648

Query: 276 ----VPQKVNLLA--GEDIVQ---VSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
                 ++++L+   GE  V+   ++CGG H  A++R   +F +GR D G+LG G
Sbjct: 649 QALDSSEQMSLIKFPGETTVRINYIACGGEHIFAISRMNELFGWGRNDEGQLGLG 703



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 174/422 (41%), Gaps = 94/422 (22%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++   ++  WG+G  G+LG G +   +   +++ L+ Y++  V  G+ ++LAI   G   
Sbjct: 411 ISEKLNLYTWGTGTYGRLGHGMDTSEKKPKLIEDLDQYEIIHVSCGAFHTLAITGQGTVY 470

Query: 58  -------------KTKTENIPSQVNALSNTKI---------------VQAAIGGWHCLAV 89
                        + + E + S+   +S  K+               + AA G  H L +
Sbjct: 471 AFGQGKYGKLGINRKQREGVFSRPEKISFYKVGVEPQEMLVQDKNEAILAAAGYNHSLCL 530

Query: 90  DDQGRAYAWGGNEYGQCGEEPERKDD------------TGRILRRDIVI-----PQRCAP 132
              G+ Y+WG N  G  G +   ++              G+I   D +I      Q    
Sbjct: 531 AKSGKIYSWGYNGKGLLGRQKGFEEHLPIEIGQIPGELIGKIPNIDELIQRGDLKQEETF 590

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWT-----WGQPWPPGD--------------------- 166
              V QVA G  ++V LT  G V+      +GQ     D                     
Sbjct: 591 SYEVIQVACGVLNTVSLTNGGEVYVFGSNAYGQLAKDKDQTTFRKYKKQDQNNNNDNSQA 650

Query: 167 ---IKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-R 220
               +Q+S+ ++  G   V++  IA G  H  A+     L+ WG N+ GQLG G      
Sbjct: 651 LDSSEQMSL-IKFPGETTVRINYIACGGEHIFAISRMNELFGWGRNDEGQLGLGFVSDFT 709

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           ++P  ++ ++   +  IA G  +S A++  GE++  G  E+G+LG G   K   ++   +
Sbjct: 710 AEPTLIRQIAHKNIQMIACGDNYSAAVSAFGELFVTGNLENGKLGLGQALKKGFLLSFTL 769

Query: 281 --NLLAGEDIVQVSCGGTHSVALT--------RDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             NL     I  V+CG  H +A+         +DG  +S+GR   G+LG G K  +  P 
Sbjct: 770 IQNLAP---IKSVACGPNHMLAIADYNPDHPIKDGMCYSWGRNWKGQLGIGSKEDSNVPK 826

Query: 331 EV 332
           ++
Sbjct: 827 KI 828



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 41/284 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ +  +++  I   A G  +  AV   G  +  G  E G+ G         G+ L++  
Sbjct: 712 PTLIRQIAHKNIQMIACGDNYSAAVSAFGELFVTGNLENGKLG--------LGQALKKGF 763

Query: 125 VIP----QRCAPKLIVRQVAAGGTHSVVLT--------REGHVWTWGQPWPP----GDIK 168
           ++     Q  AP   ++ VA G  H + +         ++G  ++WG+ W      G  +
Sbjct: 764 LLSFTLIQNLAP---IKSVACGPNHMLAIADYNPDHPIKDGMCYSWGRNWKGQLGIGSKE 820

Query: 169 QISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
             +VP ++    E+ K +A G   ++ L     ++ WGNN+Y    +  T+    P  +Q
Sbjct: 821 DSNVPKKIHNAKERFKKVACGQDFSIGLTYGNQVYLWGNNKYF-CDSKITKDVDIPQLLQ 879

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSS-------KMVPQK 279
            L    + DIA      + L D GE+  WG     R+      DK S       K   +K
Sbjct: 880 ALEQAQIKDIACSYKFCSVLNDKGEILIWGSYLTDRIKQNQKKDKKSQNHLAITKFPMRK 939

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
            + L    +  +S G  HS A++    ++++G  + GRLG   K
Sbjct: 940 FDFL----METISAGQNHSAAVSVKRSLYTWGHAEGGRLGLNEK 979



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 53/330 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIG-NNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC----- 54
           ++    +  WG  ++GQLG+G  ++      +++ +    ++ +  G   S A+      
Sbjct: 683 ISRMNELFGWGRNDEGQLGLGFVSDFTAEPTLIRQIAHKNIQMIACGDNYSAAVSAFGEL 742

Query: 55  ------DDGKTKTENIPSQVNALSNT------KIVQAAIGGWHCLAVDD--------QGR 94
                 ++GK        +   LS T       I   A G  H LA+ D         G 
Sbjct: 743 FVTGNLENGKLGLGQALKKGFLLSFTLIQNLAPIKSVACGPNHMLAIADYNPDHPIKDGM 802

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREG 153
            Y+WG N  GQ G     K+D+         +P++    K   ++VA G   S+ LT   
Sbjct: 803 CYSWGRNWKGQLG--IGSKEDSN--------VPKKIHNAKERFKKVACGQDFSIGLTYGN 852

Query: 154 HVWTWGQPWPPGD---IKQISVPVRVQGLEQVKLIAVGAFHNL--ALQEDGALWAWGN-- 206
            V+ WG      D    K + +P  +Q LEQ ++  +   +     L + G +  WG+  
Sbjct: 853 QVYLWGNNKYFCDSKITKDVDIPQLLQALEQAQIKDIACSYKFCSVLNDKGEILIWGSYL 912

Query: 207 -NEYGQLGTGDTQPRSQ----PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
            +   Q    D + ++       P++    L +  I+AG  HS A++    +Y WG  E 
Sbjct: 913 TDRIKQNQKKDKKSQNHLAITKFPMRKFDFL-METISAGQNHSAAVSVKRSLYTWGHAEG 971

Query: 262 GRLGFGDND-KSSKMVPQKVNLLAGEDIVQ 290
           GRLG  + + K++K+ P  V  +   DI+Q
Sbjct: 972 GRLGLNEKEYKNAKIEPILVQSI--HDIMQ 999


>gi|307190185|gb|EFN74300.1| X-linked retinitis pigmentosa GTPase regulator [Camponotus
           floridanus]
          Length = 807

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 138/310 (44%), Gaps = 27/310 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR--ILRR 122
           PS V  L   K+   A G  H L      + +A G N+ GQ G E     D+    IL  
Sbjct: 125 PSCVKILKPEKVTHVACGRAHTLICTGAQKIFACGSNQEGQLGRENSAIGDSSSSPILIY 184

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
           D  +     P+++  Q+AAG  HS++LT +G V  WG     Q   PG    ++ P +V 
Sbjct: 185 DCGL---AGPRIV--QIAAGSHHSMILTSDGGVVAWGSNLEGQLGLPGVSGLVNKPTKVP 239

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
             E VK I+ G +H+  L E G ++  G +E G+LG  D    +Q  P Q       + +
Sbjct: 240 IPEPVKEISAGYYHSAFLTESGLVYVCGESESGKLGI-DVNFSTQVAPKQMQLPTPAIHV 298

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL--LAGEDIVQVSCGG 295
             GG H+  L ++  +Y  G    G+LG G N     M P+ +    L  E IV+++CG 
Sbjct: 299 TCGGHHTLVLAENSNIYCSGSNASGQLGMGTNLNEIHM-PKHLARGSLRNEKIVKIACGE 357

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           +HS  LT  G +F+ G G HG+LG          +                 +      V
Sbjct: 358 SHSAILTELGKLFTCGDGRHGKLGLEENENNVHEVTFAAKY-----------QELFITNV 406

Query: 356 ACGGRHTLAI 365
           ACGG HT+ +
Sbjct: 407 ACGGCHTILV 416



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 155/364 (42%), Gaps = 50/364 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC------------ 54
           +  +GS + GQLG+G+         VK L+P KV  V  G  ++L IC            
Sbjct: 103 LFVFGSNDWGQLGLGHKNHISKPSCVKILKPEKVTHVACGRAHTL-ICTGAQKIFACGSN 161

Query: 55  DDGKTKTEN----------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
            +G+   EN          I      L+  +IVQ A G  H + +   G   AWG N  G
Sbjct: 162 QEGQLGRENSAIGDSSSSPILIYDCGLAGPRIVQIAAGSHHSMILTSDGGVVAWGSNLEG 221

Query: 105 QCGEEPERKDDTGRILR-RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           Q G        +G + +   + IP+       V++++AG  HS  LT  G V+  G+   
Sbjct: 222 QLG----LPGVSGLVNKPTKVPIPEP------VKEISAGYYHSAFLTESGLVYVCGESES 271

Query: 164 PG-----DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                  +      P ++Q       +  G  H L L E+  ++  G+N  GQLG G T 
Sbjct: 272 GKLGIDVNFSTQVAPKQMQLPTPAIHVTCGGHHTLVLAENSNIYCSGSNASGQLGMG-TN 330

Query: 219 PRSQPIPVQ----GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK 274
                +P       L    +V IA G  HS  LT+ G+++  G G HG+LG  +N+ +  
Sbjct: 331 LNEIHMPKHLARGSLRNEKIVKIACGESHSAILTELGKLFTCGDGRHGKLGLEENENNVH 390

Query: 275 MV--PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            V    K   L    I  V+CGG H++ + R   + S  + D        K ++  P+++
Sbjct: 391 EVTFAAKYQELF---ITNVACGGCHTILVGRRHEMDSQSQSDSTESATQNK-SSLPPLKL 446

Query: 333 PINI 336
           P+NI
Sbjct: 447 PVNI 450



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V  I  G  H+  + + G L+ +G+N++GQLG G     S+P  V+ L    +  +A G 
Sbjct: 84  VVAIECGDEHSAVICQSGRLFVFGSNDWGQLGLGHKNHISKPSCVKILKPEKVTHVACGR 143

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDN---DKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            H+   T   +++  G  + G+LG  ++   D SS  +      LAG  IVQ++ G  HS
Sbjct: 144 AHTLICTGAQKIFACGSNQEGQLGRENSAIGDSSSSPILIYDCGLAGPRIVQIAAGSHHS 203

Query: 299 VALTRDGHIFSFGRGDHGRLGY-GRKVTTGQPMEVPINIPAP 339
           + LT DG + ++G    G+LG  G      +P +VP  IP P
Sbjct: 204 MILTSDGGVVAWGSNLEGQLGLPGVSGLVNKPTKVP--IPEP 243


>gi|443715597|gb|ELU07510.1| hypothetical protein CAPTEDRAFT_122289, partial [Capitella teleta]
          Length = 477

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 22/240 (9%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG-QPWPP---GDIKQISVPVRVQGL--EQVKLIAVGA 189
           V  ++ G  H+ +L  +G V+T+G   W     G  K ++ P R++ L  E+V  +A G 
Sbjct: 27  VLHISCGDEHTSLLAGDGRVFTFGDNAWGQLGLGHTKPVTKPTRIKSLKAEKVHQVACGR 86

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            H L   E G ++++G N   QLG G D +    P  ++GL    +  ++AG +HS  LT
Sbjct: 87  SHTLLATESGKIYSFGCNNDRQLGLGLDDEKVCSPTVIKGLESHAVKMLSAGMYHSCVLT 146

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           D G VY WG GE G+LGFG+ D +    P+++++   +++V ++CG  H+  +T  G + 
Sbjct: 147 DKGSVYLWGGGEEGQLGFGE-DVTKHETPERLDV--DDEVVCIACGYYHTALVTAGGKLL 203

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW 368
           +FG  D G+LG G    TG    +P  +       DG++   ++  VACGG HT+AI  W
Sbjct: 204 TFGETDEGKLGRGSD--TGDNC-LPKVV-------DGIEGHVVS--VACGGAHTVAITGW 251



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 148/321 (46%), Gaps = 40/321 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G TK    P+++ +L   K+ Q A G  H L   + G+ Y++G N   Q G   + +   
Sbjct: 60  GHTKPVTKPTRIKSLKAEKVHQVACGRSHTLLATESGKIYSFGCNNDRQLGLGLDDE--- 116

Query: 117 GRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWPP 164
                      + C+P +I       V+ ++AG  HS VLT +G V+ WG     Q    
Sbjct: 117 -----------KVCSPTVIKGLESHAVKMLSAGMYHSCVLTDKGSVYLWGGGEEGQLGFG 165

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQP 223
            D+ +   P R+   ++V  IA G +H   +   G L  +G  + G+LG G DT     P
Sbjct: 166 EDVTKHETPERLDVDDEVVCIACGYYHTALVTAGGKLLTFGETDEGKLGRGSDTGDNCLP 225

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V G+ G  +V +A GG H+ A+T    VY +G G  G+LG G N       P K+   
Sbjct: 226 KVVDGIEG-HVVSVACGGAHTVAITG-WLVYTFGNGSSGQLGHG-NMLLQADTPHKIVWQ 282

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
               +   SCG  H+  +T  G +++ G G HG+L  G +    Q    P +  + R + 
Sbjct: 283 KPTKVRSASCGENHTALVTDRGQLWTCGDGRHGKLALGEENFANQFK--PCH--SVRFS- 337

Query: 344 DGVDRRWIAKLVACGGRHTLA 364
                +++ + V+CGG HTLA
Sbjct: 338 -----KFVVEQVSCGGCHTLA 353



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 148/284 (52%), Gaps = 27/284 (9%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--- 107
           A+   GK+K  +N PS+   +   K++  + G  H   +   GR + +G N +GQ G   
Sbjct: 3   AVFTFGKSKFADNAPSKF-WIREDKVLHISCGDEHTSLLAGDGRVFTFGDNAWGQLGLGH 61

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPW 162
            +P  K    + L+ +            V QVA G +H+++ T  G ++++G     Q  
Sbjct: 62  TKPVTKPTRIKSLKAE-----------KVHQVACGRSHTLLATESGKIYSFGCNNDRQLG 110

Query: 163 PPGDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
              D +++  P  ++GLE   VK+++ G +H+  L + G+++ WG  E GQLG G+   +
Sbjct: 111 LGLDDEKVCSPTVIKGLESHAVKMLSAGMYHSCVLTDKGSVYLWGGGEEGQLGFGEDVTK 170

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +  P +      +V IA G +H+  +T  G++  +G  + G+LG G +D     +P+ V
Sbjct: 171 HE-TPERLDVDDEVVCIACGYYHTALVTAGGKLLTFGETDEGKLGRG-SDTGDNCLPKVV 228

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
           + + G  +V V+CGG H+VA+T    +++FG G  G+LG+G  +
Sbjct: 229 DGIEGH-VVSVACGGAHTVAIT-GWLVYTFGNGSSGQLGHGNML 270



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 36/325 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  +G    GQLG+G+ +       +K+L+  KV  V  G  ++L   + GK  
Sbjct: 40  LAGDGRVFTFGDNAWGQLGLGHTKPVTKPTRIKSLKAEKVHQVACGRSHTLLATESGKIY 99

Query: 61  T---------------ENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
           +               E +  P+ +  L +  +   + G +H   + D+G  Y WGG E 
Sbjct: 100 SFGCNNDRQLGLGLDDEKVCSPTVIKGLESHAVKMLSAGMYHSCVLTDKGSVYLWGGGEE 159

Query: 104 GQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP- 161
           GQ G  E   K +T          P+R      V  +A G  H+ ++T  G + T+G+  
Sbjct: 160 GQLGFGEDVTKHET----------PERLDVDDEVVCIACGYYHTALVTAGGKLLTFGETD 209

Query: 162 ----WPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
                   D     +P  V G+E  V  +A G  H +A+     ++ +GN   GQLG G+
Sbjct: 210 EGKLGRGSDTGDNCLPKVVDGIEGHVVSVACGGAHTVAIT-GWLVYTFGNGSSGQLGHGN 268

Query: 217 TQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
              ++  P  +       +   + G  H+  +TD G+++  G G HG+L  G+ + +++ 
Sbjct: 269 MLLQADTPHKIVWQKPTKVRSASCGENHTALVTDRGQLWTCGDGRHGKLALGEENFANQF 328

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVA 300
            P      +   + QVSCGG H++A
Sbjct: 329 KPCHSVRFSKFVVEQVSCGGCHTLA 353



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 24/117 (20%)

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G V+ +G+ +     F DN  S   + +       + ++ +SCG  H+  L  DG +F+F
Sbjct: 2   GAVFTFGKSK-----FADNAPSKFWIRE-------DKVLHISCGDEHTSLLAGDGRVFTF 49

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G    G+LG G      +P+  P  I + +   + V +      VACG  HTL   E
Sbjct: 50  GDNAWGQLGLGHT----KPVTKPTRIKSLK--AEKVHQ------VACGRSHTLLATE 94


>gi|124359876|gb|ABN06170.1| Regulator of chromosome condensation/beta-lactamase-inhibitor
           protein II [Medicago truncatula]
          Length = 444

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 29/294 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   +  +P+    L N K V  A+GG H +A+   G  + WG   +G  G     ++  
Sbjct: 135 GHESSMFVPTLNPHLENVKSV--ALGGLHSVALTSAGEVFTWGYGGFGALGHSVYTRELF 192

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ------- 169
            R+++         A +  ++ +A  G H+  +T  G ++ WG+    G+ +        
Sbjct: 193 PRLVKG--------AWEGTIKHIATSGAHTAAVTESGDLYIWGRE--EGEGRLGLGPGRG 242

Query: 170 ------ISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
                 +S+P +V+ L   V  ++ G F  LAL E+G LW WG N   +LG GD     +
Sbjct: 243 PDHAGGLSIPCKVKELPFPVAAVSCGGFFTLALTEEGQLWNWGANSNYELGRGDRIGGWR 302

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P PV  L  + ++ IA+GG+HS ALTDDG+V  WG G  G+LG G  +  ++ +P  V  
Sbjct: 303 PRPVPSLEKVRVIQIASGGYHSLALTDDGKVLSWGHGGQGQLGHGSVE--NQKIPTLVEA 360

Query: 283 LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           +A E I+ +SCGG  S A+T +G ++ +G     +LG    +   QP  V +N 
Sbjct: 361 IAHEHIIYISCGGASSAAVTDEGKLYMWGNASDSQLGV-PGLPAIQPYPVEVNF 413



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 23/238 (9%)

Query: 139 VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLA 194
           ++ G  HS  L  +G +W WG+        G    + VP     LE VK +A+G  H++A
Sbjct: 106 ISCGLFHSC-LVVDGGLWVWGKGDGGRLGLGHESSMFVPTLNPHLENVKSVALGGLHSVA 164

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           L   G ++ WG   +G LG         P  V+G    T+  IA  G H+ A+T+ G++Y
Sbjct: 165 LTSAGEVFTWGYGGFGALGHSVYTRELFPRLVKGAWEGTIKHIATSGAHTAAVTESGDLY 224

Query: 255 GWGRGE-----HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            WGR E         G G +      +P KV  L    +  VSCGG  ++ALT +G +++
Sbjct: 225 IWGREEGEGRLGLGPGRGPDHAGGLSIPCKVKELP-FPVAAVSCGGFFTLALTEEGQLWN 283

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +G   +  LG G ++   +P  VP            +++  + + +A GG H+LA+ +
Sbjct: 284 WGANSNYELGRGDRIGGWRPRPVP-----------SLEKVRVIQ-IASGGYHSLALTD 329



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 16/114 (14%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT---------- 59
           WG+  + +LG G+         V +LE  +V  + +G  +SLA+ DDGK           
Sbjct: 284 WGANSNYELGRGDRIGGWRPRPVPSLEKVRVIQIASGGYHSLALTDDGKVLSWGHGGQGQ 343

Query: 60  ------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                 + + IP+ V A+++  I+  + GG    AV D+G+ Y WG     Q G
Sbjct: 344 LGHGSVENQKIPTLVEAIAHEHIIYISCGGASSAAVTDEGKLYMWGNASDSQLG 397


>gi|418744828|ref|ZP_13301174.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. CBC379]
 gi|418755747|ref|ZP_13311943.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. MOR084]
 gi|409963952|gb|EKO31852.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. MOR084]
 gi|410794314|gb|EKR92223.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. CBC379]
          Length = 506

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 144/349 (41%), Gaps = 49/349 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A   S+  WG+   GQLGIGNN           L P  V  +           DD    
Sbjct: 195 IAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGI-----------DDA--- 240

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                           V  A G  H L +   G   ++G N  GQ G      D      
Sbjct: 241 ----------------VMGAYGFNHALILKSDGTLVSFGQNNVGQLGNGEVNLDANSFST 284

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  R      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 285 NPVAVVNLRD-----VIQVIAGSEHSAALTENGEVYVWGKNQYGNLGNGRLSAANTVQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   PIP Q L+
Sbjct: 339 TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGGSGFPNPTPIPTQVLN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
                 + AGG  S ++   GEV GWG  G    L  G+ + S    P K  ++  E+++
Sbjct: 399 ITNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTSKVYEPNKA-VVGIENVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIP 337
              CG TH+ AL  +G I+ +G    G LG     +  G P  V I +P
Sbjct: 458 HFGCGATHNFALLGNGEIYGWGWNFKGSLGRQDLQSNWGAPNPVSITLP 506



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 37/264 (14%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y  G N +GQ G      D+       D+++       +    +     +S+ + +
Sbjct: 145 NGNVYTVGRNNFGQLGTGHSTGDN-----NNDVIVLLDSIRDIF--SIHFNQNNSMAIAK 197

Query: 152 EGHVWTWGQPWPPGDIKQISV----------------PVRVQGLEQVKLIAVGAFHNLAL 195
            G V+TWG         Q+ +                P  V G++   + A G  H L L
Sbjct: 198 NGSVYTWGNNAK----GQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMGAYGFNHALIL 253

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           + DG L ++G N  GQLG G+    +      PV  ++   ++ + AG  HS ALT++GE
Sbjct: 254 KSDGTLVSFGQNNVGQLGNGEVNLDANSFSTNPVAVVNLRDVIQVIAGSEHSAALTENGE 313

Query: 253 VYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           VY WG+ ++G LG G    ++ +   P KV  L+G  I Q++ G  H +AL  DG I+S+
Sbjct: 314 VYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIYSW 371

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPI 334
           G    G+LG G    +G P   PI
Sbjct: 372 GLNASGQLGIGG---SGFPNPTPI 392



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 21/216 (9%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP--------WPPGDIKQISVPVRVQGLEQVKLIAVGA 189
           +++AG  HS  L + G+V+T G+            GD     V V +  +  +  I    
Sbjct: 132 KLSAGAAHSGFL-KNGNVYTVGRNNFGQLGTGHSTGDNNN-DVIVLLDSIRDIFSIHFNQ 189

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTG--------DTQPRSQPIPVQGLSGLTLVDIAAGG 241
            +++A+ ++G+++ WGNN  GQLG G        +   R  P  V G+    +   A G 
Sbjct: 190 NNSMAIAKNGSVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMG--AYGF 247

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            H+  L  DG +  +G+   G+LG G+ N  ++      V ++   D++QV  G  HS A
Sbjct: 248 NHALILKSDGTLVSFGQNNVGQLGNGEVNLDANSFSTNPVAVVNLRDVIQVIAGSEHSAA 307

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           LT +G ++ +G+  +G LG GR          P+ +
Sbjct: 308 LTENGEVYVWGKNQYGNLGNGRLSAANTVQSTPVKV 343


>gi|148704197|gb|EDL36144.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1, isoform CRA_b [Mus musculus]
          Length = 563

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 144/291 (49%), Gaps = 39/291 (13%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR----CAPKLIVRQVAAG 142
           + V D    + +G N Y  C          G    +  ++P++    C  K  ++ ++ G
Sbjct: 67  IYVTDNDEVFVFGLN-YSNC---------LGTGDNQSTLVPKKLEALCGKK--IKSLSYG 114

Query: 143 -GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLA 194
            G H ++ T +G V+ WG         G   Q   PV+V     ++QV  +A G+ H++A
Sbjct: 115 SGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMA 174

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEV 253
           L  DG L+AWG N  GQ+G+G T  +  P  V   L    +V+IA G   S A+ D GEV
Sbjct: 175 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEV 234

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           YGWG   +G+LG G+N   +++ P +V  L G  + Q+ CG  H++ALT +G ++++G  
Sbjct: 235 YGWGYNGNGQLGLGNN--GNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGAN 292

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            +G+LG G K     P ++             V++  + ++ AC   HT A
Sbjct: 293 TYGQLGTGSKNNLLSPTQIM------------VEKERVIEIAACHSTHTSA 331



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 89  GDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQG- 147

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+++QV   A G  HS+ L  +G ++ WG         G   
Sbjct: 148 ---------IAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA 198

Query: 169 QISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P +V      K    IA G   ++A+ + G ++ WG N  GQLG G+   +  P+ 
Sbjct: 199 NQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVR 258

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L G+ +  I  G  H+ ALTD+G +Y WG   +G+LG G   K++ + P ++ ++  
Sbjct: 259 VAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--SKNNLLSPTQI-MVEK 315

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E ++++ +C  TH S A T+ GH++ +G+
Sbjct: 316 ERVIEIAACHSTHTSAAKTQGGHVYMWGQ 344



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 13/176 (7%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG-GWHSTALTDDG 251
           + + ++  ++ +G N    LGTGD Q    P  ++ L G  +  ++ G G H    T+DG
Sbjct: 67  IYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDG 126

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            VY WG   + +LG G  ++    V    NLL  + +++V+CG  HS+AL  DG +F++G
Sbjct: 127 VVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLI-KQVIEVACGSHHSMALAADGELFAWG 185

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             + G++G G             N P PR   + +  + +   +ACG   ++A+++
Sbjct: 186 YNNCGQVGSGSTA----------NQPTPRKVTNCLHTKRVVN-IACGQTSSMAVLD 230



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +A+   + AWG    GQ+G G+   +     V   L   +V ++  G  +S+A+ D G+ 
Sbjct: 175 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEV 234

Query: 60  K----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL    + Q   G  H LA+ D+G  YAWG N Y
Sbjct: 235 YGWGYNGNGQLGLGNNGNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTY 294

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG   + +++ P +     + ++   A   TH S   T+ GHV+ WGQ
Sbjct: 295 GQLG--------TGS--KNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQ 344


>gi|398338907|ref|ZP_10523610.1| regulator of chromosome condensation [Leptospira kirschneri serovar
           Bim str. 1051]
 gi|421130676|ref|ZP_15590868.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 2008720114]
 gi|410357779|gb|EKP04984.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri str. 2008720114]
          Length = 507

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 150/345 (43%), Gaps = 51/345 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+   GQLGIGNN            +P K     AG+R                P+
Sbjct: 200 VYTWGANSKGQLGIGNNNT----------DPAKASD--AGNRQP--------------PT 233

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++  ++N   V  A G  H L +   G   A+G N  GQ G      +          V+
Sbjct: 234 EIPGINNA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVV 291

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---------PPGDIKQISVPVRVQ 177
             R      V QV AG  HS  LT  G V+ WG+            P +  Q SVPV+V+
Sbjct: 292 QLRN-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGIVSPANTVQ-SVPVKVE 345

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           GL ++K IA G  H LAL  DG +++WG N  GQLG G     + P        L + D+
Sbjct: 346 GLPKIKQIANGRDHILALTYDGKIYSWGLNASGQLGIGGN--GNPPPTPIPTKILNIQDV 403

Query: 238 A---AGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           A   AGG  S A+  +GEV GWG  G    L  G+++      P K  ++  +++V   C
Sbjct: 404 ASIWAGGTQSFAILKNGEVKGWGANGNMASLALGESNTPKVYEPNKA-VVGIDNVVHFGC 462

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIP 337
           G TH+ AL  +G I+ +G    G LG        G P  V I +P
Sbjct: 463 GATHNFALLGNGEIYGWGWNFKGSLGRNDLQNNWGAPNPVSIKLP 507



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 113/250 (45%), Gaps = 30/250 (12%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
            G  Y  G N +GQ G      D+   RI++ D +          +  +     +S+ ++
Sbjct: 144 NGELYTVGRNNFGQLGMGISTGDNINDRIMKVDRIRD--------IFSIHFNQNNSMAIS 195

Query: 151 REGHVWTWG--------------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           + G V+TWG               P    D      P  + G+    + A G  H L L+
Sbjct: 196 QSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMGAYGFNHALILK 255

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            DG + A+G N  GQLG G+           PV  +    ++ + AG  HS ALT++GEV
Sbjct: 256 SDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEV 315

Query: 254 YGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           Y WGR ++G LG G      + + VP KV  L    I Q++ G  H +ALT DG I+S+G
Sbjct: 316 YVWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYSWG 373

Query: 312 RGDHGRLGYG 321
               G+LG G
Sbjct: 374 LNASGQLGIG 383



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 46/276 (16%)

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
           K   G IL ++I             +++AGG HS  L   G ++T G+     +  Q+ +
Sbjct: 113 KKSNGFILSQEIHF-------YFGTKLSAGGAHSGFLIN-GELYTVGR----NNFGQLGM 160

Query: 173 PV--------RVQGLEQVKLIAVGAFH---NLALQEDGALWAWGNNEYGQLGTGD--TQP 219
            +        R+  +++++ I    F+   ++A+ + G ++ WG N  GQLG G+  T P
Sbjct: 161 GISTGDNINDRIMKVDRIRDIFSIHFNQNNSMAISQSGRVYTWGANSKGQLGIGNNNTDP 220

Query: 220 --------RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND- 270
                   R  P  + G++   +   A G  H+  L  DG V  +G+   G+LG G+N+ 
Sbjct: 221 AKASDAGNRQPPTEIPGINNAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGENNL 278

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             +      VN++   +++QV  G  HS ALT +G ++ +GR  +G LG G         
Sbjct: 279 NRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGIVSPANTVQ 338

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            VP+ +       +G+ +    K +A G  H LA+ 
Sbjct: 339 SVPVKV-------EGLPK---IKQIANGRDHILALT 364



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 107/258 (41%), Gaps = 41/258 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIG-NNEEREWVCV--VKALEPYKVRSVVAGSRNSLAICDDG 57
           + S  +++A+G    GQLG G NN  R       V  ++   V  V+AGS +S A+ ++G
Sbjct: 254 LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENG 313

Query: 58  K--------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +                       +++P +V  L   KI Q A G  H LA+   G+ Y+
Sbjct: 314 EVYVWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYS 371

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG N  GQ G           I  + + I         V  + AGGT S  + + G V  
Sbjct: 372 WGLNASGQLGIGGNGNPPPTPIPTKILNIQD-------VASIWAGGTQSFAILKNGEVKG 424

Query: 158 WGQ-------PWPPGDIKQISVPVR-VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
           WG             +  ++  P + V G++ V     GA HN AL  +G ++ WG N  
Sbjct: 425 WGANGNMASLALGESNTPKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFK 484

Query: 210 GQLGTGDTQPR-SQPIPV 226
           G LG  D Q     P PV
Sbjct: 485 GSLGRNDLQNNWGAPNPV 502


>gi|81885004|sp|Q6NXM2.1|RCBT1_MOUSE RecName: Full=RCC1 and BTB domain-containing protein 1; AltName:
           Full=Regulator of chromosome condensation and BTB
           domain-containing protein 1
 gi|44890811|gb|AAH67005.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Mus musculus]
          Length = 531

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 144/291 (49%), Gaps = 39/291 (13%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR----CAPKLIVRQVAAG 142
           + V D    + +G N Y  C          G    +  ++P++    C  K  ++ ++ G
Sbjct: 35  IYVTDNDEVFVFGLN-YSNC---------LGTGDNQSTLVPKKLEALCGKK--IKSLSYG 82

Query: 143 -GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLA 194
            G H ++ T +G V+ WG         G   Q   PV+V     ++QV  +A G+ H++A
Sbjct: 83  SGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMA 142

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEV 253
           L  DG L+AWG N  GQ+G+G T  +  P  V   L    +V+IA G   S A+ D GEV
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEV 202

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           YGWG   +G+LG G+N   +++ P +V  L G  + Q+ CG  H++ALT +G ++++G  
Sbjct: 203 YGWGYNGNGQLGLGNN--GNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGAN 260

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            +G+LG G K     P ++             V++  + ++ AC   HT A
Sbjct: 261 TYGQLGTGSKNNLLSPTQIM------------VEKERVIEIAACHSTHTSA 299



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+++QV   A G  HS+ L  +G ++ WG         G   
Sbjct: 116 ---------IAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA 166

Query: 169 QISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P +V      K    IA G   ++A+ + G ++ WG N  GQLG G+   +  P+ 
Sbjct: 167 NQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVR 226

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L G+ +  I  G  H+ ALTD+G +Y WG   +G+LG G   K++ + P ++ ++  
Sbjct: 227 VAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--SKNNLLSPTQI-MVEK 283

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E ++++ +C  TH S A T+ GH++ +G+
Sbjct: 284 ERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P     + +  +    A   + + ++  ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQEAGSIRKACVFGTSANEAIYVTDNDEVFVFGLNYSNCLGTGDNQSTL 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ L G  +  ++ G G H    T+DG VY WG   + +LG G  ++    V    
Sbjct: 64  VPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL  + +++V+CG  HS+AL  DG +F++G  + G++G G             N P PR
Sbjct: 124 NLLI-KQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KVTNCLHTKRVVN-IACGQTSSMAVLD 198



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +A+   + AWG    GQ+G G+   +     V   L   +V ++  G  +S+A+ D G+ 
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEV 202

Query: 60  K----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL    + Q   G  H LA+ D+G  YAWG N Y
Sbjct: 203 YGWGYNGNGQLGLGNNGNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTY 262

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG   + +++ P +     + ++   A   TH S   T+ GHV+ WGQ
Sbjct: 263 GQLG--------TGS--KNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312


>gi|169808411|ref|NP_082040.2| RCC1 and BTB domain-containing protein 1 [Mus musculus]
 gi|26329171|dbj|BAC28324.1| unnamed protein product [Mus musculus]
 gi|148704196|gb|EDL36143.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1, isoform CRA_a [Mus musculus]
          Length = 531

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 144/291 (49%), Gaps = 39/291 (13%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR----CAPKLIVRQVAAG 142
           + V D    + +G N Y  C          G    +  ++P++    C  K  ++ ++ G
Sbjct: 35  IYVTDNDEVFVFGLN-YSNC---------LGTGDNQSTLVPKKLEALCGKK--IKSLSYG 82

Query: 143 -GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLA 194
            G H ++ T +G V+ WG         G   Q   PV+V     ++QV  +A G+ H++A
Sbjct: 83  SGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMA 142

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEV 253
           L  DG L+AWG N  GQ+G+G T  +  P  V   L    +V+IA G   S A+ D GEV
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEV 202

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
           YGWG   +G+LG G+N   +++ P +V  L G  + Q+ CG  H++ALT +G ++++G  
Sbjct: 203 YGWGYNGNGQLGLGNN--GNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGAN 260

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
            +G+LG G K     P ++             V++  + ++ AC   HT A
Sbjct: 261 TYGQLGTGSKNNLLSPTQIM------------VEKERVIEIAACHSTHTSA 299



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+++QV   A G  HS+ L  +G ++ WG         G   
Sbjct: 116 ---------IAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA 166

Query: 169 QISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P +V      K    IA G   ++A+ + G ++ WG N  GQLG G+   +  P+ 
Sbjct: 167 NQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVR 226

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L G+ +  I  G  H+ ALTD+G +Y WG   +G+LG G   K++ + P ++ ++  
Sbjct: 227 VAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--SKNNLLSPTQI-MVEK 283

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E ++++ +C  TH S A T+ GH++ +G+
Sbjct: 284 ERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P     + +  +    A   + + ++  ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQEAGSIRKACVFGTSANEAIYVTDNDEVFVFGLNYSNCLGTGDNQSTL 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ L G  +  ++ G G H    T+DG VY WG   + +LG G  ++    V    
Sbjct: 64  VPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL  + +++V+CG  HS+AL  DG +F++G  + G++G G             N P PR
Sbjct: 124 NLLI-KQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KVTNCLHTKRVVN-IACGQTSSMAVLD 198



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +A+   + AWG    GQ+G G+   +     V   L   +V ++  G  +S+A+ D G+ 
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKRVVNIACGQTSSMAVLDSGEV 202

Query: 60  K----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL    + Q   G  H LA+ D+G  YAWG N Y
Sbjct: 203 YGWGYNGNGQLGLGNNGNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTY 262

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG   + +++ P +     + ++   A   TH S   T+ GHV+ WGQ
Sbjct: 263 GQLG--------TGS--KNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312


>gi|186524238|ref|NP_197443.3| regulator of chromosome condensation-like protein with FYVE zinc
           finger domain [Arabidopsis thaliana]
 gi|332005320|gb|AED92703.1| regulator of chromosome condensation-like protein with FYVE zinc
           finger domain [Arabidopsis thaliana]
          Length = 1105

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 149/338 (44%), Gaps = 64/338 (18%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + +     +   A GG H + V  QG +++WG    G+ G                
Sbjct: 302 LPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHG-------------- 347

Query: 124 IVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQI 170
            V      PKLI       +  VA G  HS  +T  G ++TWG+    GD        ++
Sbjct: 348 -VDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGK----GDFGILGHGNEV 402

Query: 171 S--VPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           S  VP RV  L +   V  IA G +H   +   G L+ +G+  +G LG GD +    P  
Sbjct: 403 SHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPRE 462

Query: 226 VQGLSGLTLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSS 273
           V  L GL  V  A G WH+ A+ +             G+++ WG G+  RLG GD  K  
Sbjct: 463 VDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGD--KEP 520

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           K+VP  V  L   +  QV+CG + +VALT  GH+++ G   +G+LG           +VP
Sbjct: 521 KLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLG-----NPHADGKVP 575

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
             +       DG   +   + +ACG  H +A++  +TE
Sbjct: 576 TRV-------DGKLHKSFVEEIACGAYH-VAVLTSRTE 605



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 119/310 (38%), Gaps = 85/310 (27%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  ++AL+ T I   A G +H  AV   G  Y WG  ++G  G   E             
Sbjct: 355 PKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSH---------- 404

Query: 125 VIPQRC---APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
            +P+R       + V  +A G  H+ V+T  G ++T+G         GD K + +P  V 
Sbjct: 405 WVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVD 464

Query: 178 GLEQVKLI--AVGAFHNLALQE------------DGALWAWGNNEYGQLGTGDTQPRSQP 223
            L+ ++ +  A G +H  A+ E             G L+ WG+ +  +LG GD +P+  P
Sbjct: 465 SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVP 524

Query: 224 IPVQGL-----------SGLTLV------------------------------------- 235
             V  L             LT+                                      
Sbjct: 525 TCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHADGKVPTRVDGKLHK 584

Query: 236 ----DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
               +IA G +H   LT   EVY WG+G +GRLG GD D   +  P  V  L  + +  +
Sbjct: 585 SFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDAD--DRNSPTLVESLKDKQVKSI 642

Query: 292 SCGGTHSVAL 301
           +CG   + A+
Sbjct: 643 ACGSNFTAAV 652



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 77/222 (34%), Gaps = 60/222 (27%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG G+  +LG G+ E +                                     +P+
Sbjct: 502 LFTWGDGDKSRLGHGDKEPKL------------------------------------VPT 525

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V AL      Q A G    +A+   G  Y  G   YGQ G               D  +
Sbjct: 526 CVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNP-----------HADGKV 574

Query: 127 PQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           P R   KL    V ++A G  H  VLT    V+TWG+        GD    + P  V+ L
Sbjct: 575 PTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESL 634

Query: 180 --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             +QVK IA G+    A+     L  W +     + +G  QP
Sbjct: 635 KDKQVKSIACGSNFTAAV----CLHKWASGMDQSMCSGCRQP 672



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S T +  WG G +G+LG G+ ++R    +V++L+  +V+S+  GS  + A+C
Sbjct: 600 LTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAAVC 653


>gi|375013355|ref|YP_004990343.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Owenweeksia hongkongensis DSM 17368]
 gi|359349279|gb|AEV33698.1| RCC1 domain-containing protein, alpha-tubulin suppressor
           [Owenweeksia hongkongensis DSM 17368]
          Length = 460

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 141/298 (47%), Gaps = 31/298 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G + +E   +QV  LS   I   A G  H LA+D  G  +AWG N YGQ         D+
Sbjct: 52  GSSSSEFTFTQVAGLS--LITDVAAGAEHTLALDTGGNVWAWGDNSYGQLC-------DS 102

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRV 176
             + R   ++P R A    +  ++AG   S+ L  +  VW  G+    G +   S P  V
Sbjct: 103 SYVNR---IMPHRVAGADKILSISAGWRFSLYLREDSTVWAGGEN-TNGQVGTQSPPYSV 158

Query: 177 QGLEQVK------LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             L Q+        I+ G  H L L+ DG++W+WG N YGQLG G T     P+ VQGL+
Sbjct: 159 NYLRQISNLSDVIAISAGFNHCLVLEADGSVWSWGFNSYGQLGDGTTNTSIIPVQVQGLN 218

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV- 289
             ++V I AG   S A+ +DG ++ WG   HG+LG G    S   V     L+ G D V 
Sbjct: 219 --SIVAIEAGWSVSYAIKNDGTLWSWGANYHGQLGTGSLMGSG--VTSSPQLVVGLDSVS 274

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
            +      ++AL   G ++++G+  HG+LG   K     P +V       +N G  VD
Sbjct: 275 MIRSDVDFTLALKEKGSLWAWGKNFHGQLGDSTKADRNIPTKV-------KNLGSVVD 325



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 138/315 (43%), Gaps = 38/315 (12%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD-----------G 57
           AWG    GQL   +   R     V   +  K+ S+ AG R SL + +D           G
Sbjct: 90  AWGDNSYGQLCDSSYVNRIMPHRVAGAD--KILSISAGWRFSLYLREDSTVWAGGENTNG 147

Query: 58  KTKTENIPSQVNAL---SNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
           +  T++ P  VN L   SN   V A   G+ HCL ++  G  ++WG N YGQ G+     
Sbjct: 148 QVGTQSPPYSVNYLRQISNLSDVIAISAGFNHCLVLEADGSVWSWGFNSYGQLGDGTTNT 207

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIK- 168
                      +IP +      +  + AG + S  +  +G +W+WG  +      G +  
Sbjct: 208 S----------IIPVQVQGLNSIVAIEAGWSVSYAIKNDGTLWSWGANYHGQLGTGSLMG 257

Query: 169 --QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
               S P  V GL+ V +I       LAL+E G+LWAWG N +GQLG      R+ P  V
Sbjct: 258 SGVTSSPQLVVGLDSVSMIRSDVDFTLALKEKGSLWAWGKNFHGQLGDSTKADRNIPTKV 317

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + L   ++VD+  G     A+   GE+Y WG G  G L    +  + K+ P  +  +A  
Sbjct: 318 KNLG--SVVDVGVGSAVGYAINSVGEIYSWGAGPEGAL--ASDTITQKLTPSSITPIACN 373

Query: 287 DIVQVSCGGTHSVAL 301
            +V +     H  ++
Sbjct: 374 PVVSIYEQKAHKTSI 388



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 29/255 (11%)

Query: 82  GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA 141
           GG H +     G AY  G N+ GQ G      + T            + A   ++  VAA
Sbjct: 25  GGGHGIVKCKDGYAYTAGYNDKGQLGIGSSSSEFT----------FTQVAGLSLITDVAA 74

Query: 142 GGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           G  H++ L   G+VW W     GQ      + +I +P RV G +++  I+ G   +L L+
Sbjct: 75  GAEHTLALDTGGNVWAWGDNSYGQLCDSSYVNRI-MPHRVAGADKILSISAGWRFSLYLR 133

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT----LVDIAAGGWHSTALTDDGE 252
           ED  +WA G N  GQ+GT     +S P  V  L  ++    ++ I+AG  H   L  DG 
Sbjct: 134 EDSTVWAGGENTNGQVGT-----QSPPYSVNYLRQISNLSDVIAISAGFNHCLVLEADGS 188

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V+ WG   +G+L  GD   ++ ++P +V  L    IV +  G + S A+  DG ++S+G 
Sbjct: 189 VWSWGFNSYGQL--GDGTTNTSIIPVQVQGL--NSIVAIEAGWSVSYAIKNDGTLWSWGA 244

Query: 313 GDHGRLGYGRKVTTG 327
             HG+LG G  + +G
Sbjct: 245 NYHGQLGTGSLMGSG 259



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 18/218 (8%)

Query: 124 IVIPQRCAPKLIVRQ-VAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV--------PV 174
           +++   C   +   Q +  GG H +V  ++G+ +T G      D  Q+ +          
Sbjct: 6   VIVTMFCGISVCKAQRIDGGGGHGIVKCKDGYAYTAGY----NDKGQLGIGSSSSEFTFT 61

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           +V GL  +  +A GA H LAL   G +WAWG+N YGQL       R  P  V G     +
Sbjct: 62  QVAGLSLITDVAAGAEHTLALDTGGNVWAWGDNSYGQLCDSSYVNRIMPHRVAGAD--KI 119

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           + I+AG   S  L +D  V+  G   +G++G      S   + Q  NL    D++ +S G
Sbjct: 120 LSISAGWRFSLYLREDSTVWAGGENTNGQVGTQSPPYSVNYLRQISNL---SDVIAISAG 176

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
             H + L  DG ++S+G   +G+LG G   T+  P++V
Sbjct: 177 FNHCLVLEADGSVWSWGFNSYGQLGDGTTNTSIIPVQV 214


>gi|326674002|ref|XP_001334658.4| PREDICTED: RCC1 and BTB domain-containing protein 2 [Danio rerio]
          Length = 527

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 26/242 (10%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL---EQVKLI 185
           K I+      G H V+ T +G V+ WG         G       P  V      ++V  +
Sbjct: 74  KKIISLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTNLIGKRVTEV 133

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---TLVDIAAGGW 242
           + G+ H +AL  DG ++AWG N  GQ+G+G T   +QP P +  S L    +V+IA G  
Sbjct: 134 SCGSHHTIALTTDGEVYAWGYNNSGQVGSGSTA--NQPTPRRVSSCLQNKVVVNIACGQL 191

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            S A+ D+GE YGWG   +G+LG G+N   ++  P ++  L G +I+QV+CG  H++ALT
Sbjct: 192 CSMAVLDNGETYGWGYNCNGQLGLGNN--GNQQTPCRIAALQGINIIQVACGYAHTLALT 249

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            +G ++S+G   +G+LG G K  + Q +   IN+          D+  + ++ AC   HT
Sbjct: 250 DEGFVYSWGANSYGQLGTGNK--SNQAVPTLINM----------DKERMVEVAACHTSHT 297

Query: 363 LA 364
            A
Sbjct: 298 SA 299



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 133/266 (50%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G T++   P +++ L   KI+  + G G H +     G  YAWG N Y Q G        
Sbjct: 57  GDTQSTIEPRRIDILCGKKIISLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGL 116

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
           T  ++  +++  +       V +V+ G  H++ LT +G V+ WG         G      
Sbjct: 117 TPALVSTNLIGKR-------VTEVSCGSHHTIALTTDGEVYAWGYNNSGQVGSGSTANQP 169

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P RV    Q K+   IA G   ++A+ ++G  + WG N  GQLG G+   +  P  +  
Sbjct: 170 TPRRVSSCLQNKVVVNIACGQLCSMAVLDNGETYGWGYNCNGQLGLGNNGNQQTPCRIAA 229

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L G+ ++ +A G  H+ ALTD+G VY WG   +G+LG G  +KS++ VP  +N +  E +
Sbjct: 230 LQGINIIQVACGYAHTLALTDEGFVYSWGANSYGQLGTG--NKSNQAVPTLIN-MDKERM 286

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V+V +C  +H S A T+ G +  +G+
Sbjct: 287 VEVAACHTSHTSAAKTQSGQVLMWGQ 312



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   +  +  P  ++ + Q  +    A   + +  +  ++A G N  G LG GDTQ   
Sbjct: 7   WP---VFALLPPEELRLIRQACVFGSAANEAIYVTVNDEVFALGTNCSGCLGLGDTQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  L G  ++ ++ G G H    T DGEVY WG   + +LG G  +          
Sbjct: 64  EPRRIDILCGKKIISLSYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVST 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NL+ G+ + +VSCG  H++ALT DG ++++G  + G++G G             N P PR
Sbjct: 124 NLI-GKRVTEVSCGSHHTIALTTDGEVYAWGYNNSGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +  + +   +ACG   ++A+++
Sbjct: 173 RVSSCLQNKVVVN-IACGQLCSMAVLD 198



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 26/245 (10%)

Query: 135 IVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
           ++RQ    G+    ++ +T    V+  G         GD +    P R+  L   K+I++
Sbjct: 20  LIRQACVFGSAANEAIYVTVNDEVFALGTNCSGCLGLGDTQSTIEPRRIDILCGKKIISL 79

Query: 188 G---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-GLSGLTLVDIAAGGWH 243
                 H +    DG ++AWG+N Y QLG G T     P  V   L G  + +++ G  H
Sbjct: 80  SYGTGPHVVIATADGEVYAWGHNGYSQLGNGTTNHGLTPALVSTNLIGKRVTEVSCGSHH 139

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALT 302
           + ALT DGEVY WG    G++G G    +++  P++V+  L  + +V ++CG   S+A+ 
Sbjct: 140 TIALTTDGEVYAWGYNNSGQVGSGST--ANQPTPRRVSSCLQNKVVVNIACGQLCSMAVL 197

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            +G  + +G   +G+LG G       P  +         A  G++       VACG  HT
Sbjct: 198 DNGETYGWGYNCNGQLGLGNNGNQQTPCRIA--------ALQGIN----IIQVACGYAHT 245

Query: 363 LAIVE 367
           LA+ +
Sbjct: 246 LALTD 250



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D+G+T      
Sbjct: 149 VYAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDNGETYGWGYN 208

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL    I+Q A G  H LA+ D+G  Y+WG N YGQ G  
Sbjct: 209 CNGQLGLGNNGNQQTPCRIAALQGINIIQVACGYAHTLALTDEGFVYSWGANSYGQLGTG 268

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
            +       ++  D         + +V   A   +H S   T+ G V  WGQ
Sbjct: 269 NKSNQAVPTLINMD--------KERMVEVAACHTSHTSAAKTQSGQVLMWGQ 312


>gi|26353276|dbj|BAC40268.1| unnamed protein product [Mus musculus]
          Length = 531

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 145/293 (49%), Gaps = 43/293 (14%)

Query: 87  LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR----CAPKLIVRQVAAG 142
           + V D    + +G N Y  C          G    +  ++P++    C  K  ++ ++ G
Sbjct: 35  IYVTDNDEVFVFGLN-YSNC---------LGTGDNQSTLVPKKLEALCGKK--IKSLSYG 82

Query: 143 -GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLA 194
            G H ++ T +G V+ WG         G   Q   PV+V     ++QV  +A G+ H++A
Sbjct: 83  SGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVIEVACGSHHSMA 142

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIP---VQGLSGLTLVDIAAGGWHSTALTDDG 251
           L  DG L+AWG N  GQ+G+G T   +QP P      L    +V+IA G   S A+ D G
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTA--NQPTPRKITNCLHTKRVVNIACGQTSSMAVLDSG 200

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EVYGWG   +G+LG G+N   +++ P +V  L G  + Q+ CG  H++ALT +G ++++G
Sbjct: 201 EVYGWGYNGNGQLGLGNN--GNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWG 258

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              +G+LG G K     P ++             V++  + ++ AC   HT A
Sbjct: 259 ANTYGQLGTGSKNNLLSPTQIM------------VEKERVIEIAACHSTHTSA 299



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+++QV   A G  HS+ L  +G ++ WG         G   
Sbjct: 116 ---------IAPVQVCTNLLIKQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA 166

Query: 169 QISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P ++      K    IA G   ++A+ + G ++ WG N  GQLG G+   +  P+ 
Sbjct: 167 NQPTPRKITNCLHTKRVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVR 226

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L G+ +  I  G  H+ ALTD+G +Y WG   +G+LG G   K++ + P ++ ++  
Sbjct: 227 VAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--SKNNLLSPTQI-MVEK 283

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E ++++ +C  TH S A T+ GH++ +G+
Sbjct: 284 ERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P     + +  +    A   + + ++  ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQEAGSIRKACVFGTSANEAIYVTDNDEVFVFGLNYSNCLGTGDNQSTL 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ L G  +  ++ G G H    T+DG VY WG   + +LG G  ++    V    
Sbjct: 64  VPKKLEALCGKKIKSLSYGSGPHVLLTTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL  + +++V+CG  HS+AL  DG +F++G  + G++G G             N P PR
Sbjct: 124 NLLI-KQVIEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KITNCLHTKRVVN-IACGQTSSMAVLD 198



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 30/180 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +A+   + AWG    GQ+G G+   +     +   L   +V ++  G  +S+A+ D G+ 
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTANQPTPRKITNCLHTKRVVNIACGQTSSMAVLDSGEV 202

Query: 60  K----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL    + Q   G  H LA+ D+G  YAWG N Y
Sbjct: 203 YGWGYNGNGQLGLGNNGNQLTPVRVAALHGMCVNQIVCGYAHTLALTDEGLLYAWGANTY 262

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG   + +++ P +     + ++   A   TH S   T+ GHV+ WGQ
Sbjct: 263 GQLG--------TGS--KNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312


>gi|403355850|gb|EJY77515.1| RCC1 and BTB domain-containing protein, putative [Oxytricha
           trifallax]
          Length = 546

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 156/302 (51%), Gaps = 28/302 (9%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC---GEEPERKDDTGRILRR-DIVIPQRCA 131
           ++Q A G  H L + D G  Y+ G NE G     G     +++     R   + + ++  
Sbjct: 3   VIQVAAGNEHTLILTDCGDVYSGGYNEMGNSLSQGPNAMSQNNNNNNTRTGQLKLVEKLR 62

Query: 132 PKLIVRQVAAGGT-HSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIA 186
            K IV+  A+ G  H + LT  G V+++G         GD   I+ P +V+ L +  + A
Sbjct: 63  GKNIVKIFASNGCEHVIALTNNGKVFSFGFNVKGQLGHGDQTSINSPKQVEALSRKFVTA 122

Query: 187 VGA--FHNL-ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
           VG   +H + +  ++  +++ G N+YGQLG G+   ++ P  ++ L+G  +V I  G +H
Sbjct: 123 VGCSYYHTIFSCADEMEIYSCGRNDYGQLGLGNLDDKNSPTLIEALNGKRIVSIGCGQYH 182

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S   + DGE++ +GR + G+LG   +D +  + P++V  L      Q++CG  H+VA+  
Sbjct: 183 SVVSSIDGEIFSFGRNDSGQLGITGSDGNISL-PKEVKNLKS---TQIACGYYHTVAIN- 237

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +G ++S+G+ D G+LG G  + + + +        P    D  D+  ++  VACG  HTL
Sbjct: 238 NGQLYSWGKNDSGQLGIG--IYSAKEI-------LPTLVRDLEDQEIVS--VACGCYHTL 286

Query: 364 AI 365
           A+
Sbjct: 287 AL 288



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 123/259 (47%), Gaps = 33/259 (12%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCL-AVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G   + N P QV ALS   +       +H + +  D+   Y+ G N+YGQ G      DD
Sbjct: 101 GDQTSINSPKQVEALSRKFVTAVGCSYYHTIFSCADEMEIYSCGRNDYGQLG--LGNLDD 158

Query: 116 TGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
                          +P LI       +  +  G  HSVV + +G ++++G     Q   
Sbjct: 159 KN-------------SPTLIEALNGKRIVSIGCGQYHSVVSSIDGEIFSFGRNDSGQLGI 205

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-Q 222
            G    IS+P  V+ L+  + IA G +H +A+  +G L++WG N+ GQLG G    +   
Sbjct: 206 TGSDGNISLPKEVKNLKSTQ-IACGYYHTVAIN-NGQLYSWGKNDSGQLGIGIYSAKEIL 263

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL 282
           P  V+ L    +V +A G +H+ AL   G+++ +GR  HG+LG G  + S K  P  +  
Sbjct: 264 PTLVRDLEDQEIVSVACGCYHTLALGYAGQLFSFGRNSHGQLGDGTTNNSCK--PLLIQG 321

Query: 283 LAGEDIVQVSCGGTHSVAL 301
           L  + + Q++ G  HS+ L
Sbjct: 322 LIDKKVCQIAAGFYHSIVL 340



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 124/269 (46%), Gaps = 39/269 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           + ++G    GQLG G+         V+AL    V +V     +++  C D          
Sbjct: 87  VFSFGFNVKGQLGHGDQTSINSPKQVEALSRKFVTAVGCSYYHTIFSCADEMEIYSCGRN 146

Query: 57  -------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  G    +N P+ + AL+  +IV    G +H +     G  +++G N+ GQ G  
Sbjct: 147 DYGQLGLGNLDDKNSPTLIEALNGKRIVSIGCGQYHSVVSSIDGEIFSFGRNDSGQLG-- 204

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-- 167
                 TG     +I +P+     L   Q+A G  H+V +   G +++WG+    G +  
Sbjct: 205 -----ITGS--DGNISLPKE-VKNLKSTQIACGYYHTVAINN-GQLYSWGKN-DSGQLGI 254

Query: 168 -----KQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                K+I +P  V+ LE  ++++V  G +H LAL   G L+++G N +GQLG G T   
Sbjct: 255 GIYSAKEI-LPTLVRDLEDQEIVSVACGCYHTLALGYAGQLFSFGRNSHGQLGDGTTNNS 313

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            +P+ +QGL    +  IAAG +HS  L +
Sbjct: 314 CKPLLIQGLIDKKVCQIAAGFYHSIVLAN 342



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 23/143 (16%)

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR-LGFGDNDKSSKMVP--------QKVNL 282
           + ++ +AAG  H+  LTD G+VY  G  E G  L  G N  S             + V  
Sbjct: 1   MNVIQVAAGNEHTLILTDCGDVYSGGYNEMGNSLSQGPNAMSQNNNNNNTRTGQLKLVEK 60

Query: 283 LAGEDIVQV--SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           L G++IV++  S G  H +ALT +G +FSFG    G+LG+G + +   P +V        
Sbjct: 61  LRGKNIVKIFASNGCEHVIALTNNGKVFSFGFNVKGQLGHGDQTSINSPKQV-------- 112

Query: 341 NAGDGVDRRWIAKLVACGGRHTL 363
              + + R+++   V C   HT+
Sbjct: 113 ---EALSRKFVTA-VGCSYYHTI 131


>gi|409911788|ref|YP_006890253.1| lipoprotein [Geobacter sulfurreducens KN400]
 gi|298505363|gb|ADI84086.1| ATS1 domain repeat protein [Geobacter sulfurreducens KN400]
          Length = 2082

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 158/383 (41%), Gaps = 62/383 (16%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG----------- 57
           AWG    GQLG G       + V    +    R+   G+ +S+A+  DG           
Sbjct: 421 AWGGNASGQLGDGTTTPSA-IPVPVVGDAGNWRTTATGTAHSVAVRADGTLWAWGDNSSG 479

Query: 58  -----KTKTENIPSQVN----ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                 T   + P Q+     A +       A G  H + +   G  +AWG N +GQ G 
Sbjct: 480 QLGIGSTVAASTPQQITVTNPASAGNDWAAVAAGEAHTIGLKADGTLWAWGDNTFGQLG- 538

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQ---VAAGGTHSVVLTREGHVWTWGQ----- 160
                D TG   R   V      P    R    VAAGG  S+ L  +G +WTWG      
Sbjct: 539 -----DGTGTSNRTTPVQIVTGNPGNFDRNWVAVAAGGVFSLALQADGTIWTWGDNSLLQ 593

Query: 161 ----PWPPGDIKQISVPVRVQGLEQVKL--------IAVGAFHNLALQEDGALWAWGNNE 208
               P       Q +VP ++                IA G  H LALQ DG LWAWG N 
Sbjct: 594 LGTDPAVLAPATQRNVPAQLAVASPPSTAFNSSWVAIAAGQDHGLALQADGTLWAWGANS 653

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            GQLG G T     P+ V    G+  V +AAG  HS A   DG ++ WG    G+LG G 
Sbjct: 654 VGQLGNGVTTATFTPVQVINAEGVPYVSLAAGTSHSLAGRSDGTLWAWGNNTSGQLGTGP 713

Query: 269 N-------DKSSKMVPQKV----NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +       +     VP ++     + A +D +  + GG+HS AL  +G ++++G+   G+
Sbjct: 714 HPGDADPLNPQPHTVPARILTSNPVSAADDWLVATAGGSHSAALKSNGTLWTWGQNTSGQ 773

Query: 318 LGYGRKVTTGQPMEVPINIPAPR 340
           LG G    T    ++P  +  PR
Sbjct: 774 LGNG----TTTEADIPTALLEPR 792



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 142/306 (46%), Gaps = 42/306 (13%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           + +   A GG H L +   G  +A G N++GQ G      D TG      + +P      
Sbjct: 32  SAVPHVAAGGNHVLTLRSDGTLWAAGSNQFGQLG------DGTGINRTSPVQVPGTW--- 82

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTW--------GQPWPPGDIKQISV-PVRVQGLEQVKL 184
              + VAAG THS+ +  +G +W W        GQP   G +      P+R+        
Sbjct: 83  ---KTVAAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIGTGNDWVA 139

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG--LSGLTLVDIAAGGW 242
           ++ G   +  L+ DG LW+WGNN +G+LG G T  R QP+ V    LS    V +AAGG 
Sbjct: 140 VSAGELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGE 199

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVA 300
           H+ AL  DG ++ WG    G+         + ++P    L  G D     +S G  HSVA
Sbjct: 200 HALALQADGTLWAWGANLTGQ----LGTGGTGILPNPTPLKIGTDRDWTAISAGEMHSVA 255

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVDRRWIAKLVACGG 359
           L  DG ++S+G+   G LG G        + +P  N+  P   G G D  W+A  +A G 
Sbjct: 256 LKADGSLWSWGQNLFGELGNG--------VALPGANVTTPTRVGTGSD--WVA--IAAGA 303

Query: 360 RHTLAI 365
            HT+A+
Sbjct: 304 LHTVAL 309



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 133/298 (44%), Gaps = 26/298 (8%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V  A G  H +A+   G   AWG N  G  G+       T  ++   + +    A     
Sbjct: 297 VAIAAGALHTVALHRNGTVSAWGNNAQGAVGDGTVANRSTPTLIVAPVTLVNNVA----- 351

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL-IAVGAFH 191
             +AAG   S  +   G V+ WG         G    ++ P  +       L +  G   
Sbjct: 352 --IAAGTGVSFSVLANGTVFGWGGNGAGQLGNGTFGAVTAPTVLSAGASAWLGVEPGGAF 409

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +L L+ +G LWAWG N  GQLG G T P + P+PV G +G      A G  HS A+  DG
Sbjct: 410 SLGLRSNGTLWAWGGNASGQLGDGTTTPSAIPVPVVGDAG-NWRTTATGTAHSVAVRADG 468

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL----AGEDIVQVSCGGTHSVALTRDGHI 307
            ++ WG    G+LG G    +S   PQ++ +     AG D   V+ G  H++ L  DG +
Sbjct: 469 TLWAWGDNSSGQLGIGSTVAAST--PQQITVTNPASAGNDWAAVAAGEAHTIGLKADGTL 526

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +++G    G+LG G   T+ +   V I    P N     DR W+A  VA GG  +LA+
Sbjct: 527 WAWGDNTFGQLGDGTG-TSNRTTPVQIVTGNPGN----FDRNWVA--VAAGGVFSLAL 577



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 176/398 (44%), Gaps = 71/398 (17%)

Query: 6   SIIAWGSGEDGQLG-------IGNNEE--------REWVCVVKA-LEPYKVR---SVVAG 46
           S+ AWGS   GQLG       +  N+          +WV V    L  + ++   ++ + 
Sbjct: 100 SLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIGTGNDWVAVSAGELTSFGLKGDGTLWSW 159

Query: 47  SRNSLAICDDGKTKTENIPSQVNA--LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
             N      DG T +   P QV A  LSN + V  A GG H LA+   G  +AWG N  G
Sbjct: 160 GNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGEHALALQADGTLWAWGANLTG 219

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ----VAAGGTHSVVLTREGHVWTWGQ 160
           Q G                 ++P     K+   +    ++AG  HSV L  +G +W+WGQ
Sbjct: 220 QLGTG------------GTGILPNPTPLKIGTDRDWTAISAGEMHSVALKADGSLWSWGQ 267

Query: 161 PW---------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
                       PG    ++ P RV        IA GA H +AL  +G + AWGNN  G 
Sbjct: 268 NLFGELGNGVALPG--ANVTTPTRVGTGSDWVAIAAGALHTVALHRNGTVSAWGNNAQGA 325

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVD---IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           +G G    RS P  +  ++ +TLV+   IAAG   S ++  +G V+GWG    G+LG G 
Sbjct: 326 VGDGTVANRSTPTLI--VAPVTLVNNVAIAAGTGVSFSVLANGTVFGWGGNGAGQLGNG- 382

Query: 269 NDKSSKMVPQKVNLLAGEDI-VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
              +   V     L AG    + V  GG  S+ L  +G ++++G    G+LG G    T 
Sbjct: 383 ---TFGAVTAPTVLSAGASAWLGVEPGGAFSLGLRSNGTLWAWGGNASGQLGDG----TT 435

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            P  +P  +P   +AG+     W  +  A G  H++A+
Sbjct: 436 TPSAIP--VPVVGDAGN-----W--RTTATGTAHSVAV 464



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 127/287 (44%), Gaps = 20/287 (6%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  H L +   G  +AWG N +GQ G+           L  +   P R         V
Sbjct: 86  AAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQ-----LATNKFSPIRIGTGNDWVAV 140

Query: 140 AAGGTHSVVLTREGHVWTWGQPW--PPGDIKQISVPVRVQ----GLEQVKLIAV--GAFH 191
           +AG   S  L  +G +W+WG       GD   +S P  VQ     L   + +AV  G  H
Sbjct: 141 SAGELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGEH 200

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            LALQ DG LWAWG N  GQLGTG T     P P++  +      I+AG  HS AL  DG
Sbjct: 201 ALALQADGTLWAWGANLTGQLGTGGTGILPNPTPLKIGTDRDWTAISAGEMHSVALKADG 260

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            ++ WG+   G LG G     + +  P +V    G D V ++ G  H+VAL R+G + ++
Sbjct: 261 SLWSWGQNLFGELGNGVALPGANVTTPTRVG--TGSDWVAIAAGALHTVALHRNGTVSAW 318

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRN----AGDGVDRRWIAK 353
           G    G +G G       P  +   +    N    AG GV    +A 
Sbjct: 319 GNNAQGAVGDGTVANRSTPTLIVAPVTLVNNVAIAAGTGVSFSVLAN 365



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 96/191 (50%), Gaps = 19/191 (9%)

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           G   V  +A G  H L L+ DG LWA G+N++GQLG G    R+ P+ V G    T   +
Sbjct: 30  GWSAVPHVAAGGNHVLTLRSDGTLWAAGSNQFGQLGDGTGINRTSPVQVPG----TWKTV 85

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLG---FGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           AAG  HS  +  DG ++ WG    G+LG         ++K  P ++    G D V VS G
Sbjct: 86  AAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIG--TGNDWVAVSAG 143

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
              S  L  DG ++S+G    G LG G  V+  QP++V   +  P + G     R++A  
Sbjct: 144 ELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQV---VADPLSNG-----RYVA-- 193

Query: 355 VACGGRHTLAI 365
           VA GG H LA+
Sbjct: 194 VAAGGEHALAL 204


>gi|449681031|ref|XP_002154536.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like, partial
           [Hydra magnipapillata]
          Length = 1132

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 93/308 (30%), Positives = 141/308 (45%), Gaps = 36/308 (11%)

Query: 42  SVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAI---GGWHCLAVDDQGRAYAW 98
           SV A    +      G +  E+    +  L    I+Q A    G  H LAV D G  ++W
Sbjct: 339 SVFACGEGTYGRLGQGTSDDEHSLVPITELQGYCIIQLATSLGGDGHTLAVADSGEVFSW 398

Query: 99  GGNEYGQCGE---EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           G  +YG+ G    E +RK      L+ + V+           Q + G  HS VLT++G V
Sbjct: 399 GDGDYGKLGHGNSERQRKPKQIIALQAEHVV-----------QASCGFKHSAVLTKDGKV 447

Query: 156 WTWGQPW---------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA-LWAWG 205
           +T+GQ            P    Q+ + ++ + + Q   IA G  H LAL  +G  L+AWG
Sbjct: 448 FTFGQGQYGILGDGGNSPQKTPQLILSLKNEHISQ---IACGKDHTLALANNGKKLYAWG 504

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           + E+G+LG G T  RS P  V     + L  IA G   S  L  +G +Y +G  +   LG
Sbjct: 505 DGEFGKLGLGSTSVRSIPNLVDSYRNVCLKKIACGSKFSIVLATNGYLYTFGHKDF--LG 562

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             + D     +PQ V+ L    I+ ++ G  + +AL   G+I+ +G  + G+LG G    
Sbjct: 563 IAETDLLDNTIPQIVSSLMPHPIIDIAVGCNYILALDNSGNIWGWGTNEEGQLGIG---- 618

Query: 326 TGQPMEVP 333
           T  P  +P
Sbjct: 619 TTNPHYLP 626



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 81/272 (29%), Positives = 123/272 (45%), Gaps = 31/272 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A +  + +WG G+ G+LG GN+E +     + AL+   V     G ++S  +  DGK  
Sbjct: 389 VADSGEVFSWGDGDYGKLGHGNSERQRKPKQIIALQAEHVVQASCGFKHSAVLTKDGKVF 448

Query: 61  T----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGGNEY 103
           T                +  P  + +L N  I Q A G  H LA+ + G+  YAWG  E+
Sbjct: 449 TFGQGQYGILGDGGNSPQKTPQLILSLKNEHISQIACGKDHTLALANNGKKLYAWGDGEF 508

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           G+ G         G    R I         + ++++A G   S+VL   G+++T+G    
Sbjct: 509 GKLG--------LGSTSVRSIPNLVDSYRNVCLKKIACGSKFSIVLATNGYLYTFGHKDF 560

Query: 164 PG----DIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
            G    D+   ++P  V  L    +  IAVG  + LAL   G +W WG NE GQLG G T
Sbjct: 561 LGIAETDLLDNTIPQIVSSLMPHPIIDIAVGCNYILALDNSGNIWGWGTNEEGQLGIGTT 620

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD 249
            P   P  V   SG  +  ++AG  H  A ++
Sbjct: 621 NPHYLPQLVCTFSGTNITRLSAGTTHCAAWSN 652



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 150/335 (44%), Gaps = 54/335 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY---KVRSVVAGSRNSLAICDDG 57
           + +  S+ A G G  G+LG G +++   +  +  L+ Y   ++ + + G  ++LA+ D G
Sbjct: 334 LQTNGSVFACGEGTYGRLGQGTSDDEHSLVPITELQGYCIIQLATSLGGDGHTLAVADSG 393

Query: 58  K----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
           +                ++ +  P Q+ AL    +VQA+ G  H   +   G+ + +G  
Sbjct: 394 EVFSWGDGDYGKLGHGNSERQRKPKQIIALQAEHVVQASCGFKHSAVLTKDGKVFTFGQG 453

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGH 154
           +YG  G       D G         PQ+  P+LI       + Q+A G  H++ L   G 
Sbjct: 454 QYGILG-------DGGNS-------PQK-TPQLILSLKNEHISQIACGKDHTLALANNGK 498

Query: 155 -VWTWGQ----PWPPGDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWGNN 207
            ++ WG         G     S+P  V     V  K IA G+  ++ L  +G L+ +G+ 
Sbjct: 499 KLYAWGDGEFGKLGLGSTSVRSIPNLVDSYRNVCLKKIACGSKFSIVLATNGYLYTFGHK 558

Query: 208 EYGQLGTGDTQPRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           ++  LG  +T      IP  V  L    ++DIA G  +  AL + G ++GWG  E G+LG
Sbjct: 559 DF--LGIAETDLLDNTIPQIVSSLMPHPIIDIAVGCNYILALDNSGNIWGWGTNEEGQLG 616

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            G  +     +PQ V   +G +I ++S G TH  A
Sbjct: 617 IGTTN--PHYLPQLVCTFSGTNITRLSAGTTHCAA 649



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 137/280 (48%), Gaps = 34/280 (12%)

Query: 96  YAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHV 155
           Y WG N +G   E P  +  T        + P   +    VR++  G   + +L   G V
Sbjct: 291 YVWGSNIHG---ELPGLQGKT-------CLQPNLVSTFKQVREIVCGQNCTFLLQTNGSV 340

Query: 156 WTWGQP------WPPGDIKQISVPV-RVQGLEQVKLIAV--GAFHNLALQEDGALWAWGN 206
           +  G+           D +   VP+  +QG   ++L     G  H LA+ + G +++WG+
Sbjct: 341 FACGEGTYGRLGQGTSDDEHSLVPITELQGYCIIQLATSLGGDGHTLAVADSGEVFSWGD 400

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
            +YG+LG G+++ + +P  +  L    +V  + G  HS  LT DG+V+ +G+G++G LG 
Sbjct: 401 GDYGKLGHGNSERQRKPKQIIALQAEHVVQASCGFKHSAVLTKDGKVFTFGQGQYGILGD 460

Query: 267 GDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG-HIFSFGRGDHGRLGYGRKVT 325
           G N  S +  PQ +  L  E I Q++CG  H++AL  +G  ++++G G+ G+LG G    
Sbjct: 461 GGN--SPQKTPQLILSLKNEHISQIACGKDHTLALANNGKKLYAWGDGEFGKLGLG---- 514

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +     +P  + + RN           K +ACG + ++ +
Sbjct: 515 STSVRSIPNLVDSYRNV--------CLKKIACGSKFSIVL 546


>gi|5823976|emb|CAB54002.1| RPGR protein [Homo sapiens]
 gi|119579848|gb|EAW59444.1| retinitis pigmentosa GTPase regulator, isoform CRA_d [Homo sapiens]
          Length = 646

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  +    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G +
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLK 175

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
                        ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P       P
Sbjct: 176 N----------VSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLP 225

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRS 221
              +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G      S
Sbjct: 226 NQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFETS 284

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P   +
Sbjct: 285 EPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCS 344

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
                 +  V+CGG H V  
Sbjct: 345 NFLRFIVKLVACGGCHMVVF 364



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 136/286 (47%), Gaps = 44/286 (15%)

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D G  + +G +++ +        ++ G+   + D+ +   C           G  HS V+
Sbjct: 10  DSGAVFTFGKSKFAE--------NNPGKFWFKNDVPVHLSC-----------GDEHSAVV 50

Query: 150 TREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALW 202
           T    ++      WGQ    G    IS P  V+ L  E+VKL A G  H L   E G ++
Sbjct: 51  TGNNKLYMFGSNNWGQ-LGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVY 109

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+DG ++ WG    
Sbjct: 110 ATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSE 169

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G++G    + S+  VPQ+V +  G+ +  +SCG  HS  +T DG ++ FG  ++G+LG  
Sbjct: 170 GQIGL--KNVSNVCVPQQVTI--GKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGL- 224

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  P ++  N   P+   + +  + I   VACGG HT+ + E
Sbjct: 225 -------PNQLLGNHRTPQLVSE-IPEKVIQ--VACGGEHTVVLTE 260



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAISK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 24/121 (19%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D G V+ +G+ +     F +N+         V        V +SCG  HS  +T +  
Sbjct: 8   MPDSGAVFTFGKSK-----FAENNPGKFWFKNDVP-------VHLSCGDEHSAVVTGNNK 55

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++ FG  + G+LG G K    +P  V    P               KL ACG  HTL   
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEK------------VKLAACGRNHTLVST 103

Query: 367 E 367
           E
Sbjct: 104 E 104


>gi|307109549|gb|EFN57787.1| hypothetical protein CHLNCDRAFT_10671, partial [Chlorella
           variabilis]
          Length = 272

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 128/280 (45%), Gaps = 30/280 (10%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           R  +    DG T+   +P  V  L +  +V  A G  H  AV   G  Y  G NE  Q G
Sbjct: 7   RGDMGQLGDGSTEDVFVPRLVKGLKSRDVVNLAAGALHTAAVTSDGELYVMGSNEESQLG 66

Query: 108 EEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQPW--- 162
                        R D + P R     +  V++VA G  H++ +   G V  +G      
Sbjct: 67  VRQ----------RSDALAPTRVTALEQFQVQRVACGPAHTLAVVDGGAVAAFGSAEYGQ 116

Query: 163 ----PPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
               P G   ++ +P  V+ L  + ++  A G  H LAL   G +++ GN  +G LG G 
Sbjct: 117 VGLGPCG--ARVELPRVVKDLRSMHIVRVAAGGSHTLALSSTGGVFSCGNGSFGALGRGT 174

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL-----GFGDNDK 271
           T+    P P+  L  L +V IA G  HS A+T DG V  WGRG+H  L     G GD + 
Sbjct: 175 TEGNDVPRPISRLWPLGVVQIACGENHSAAITADGRVLTWGRGKHRLLPAFHCGHGDFEN 234

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            S   P+ V  L G    QVSCG  H+V LT DG ++++G
Sbjct: 235 CS--TPKPVQALKGIVGRQVSCGDDHTVLLTEDGSVYAWG 272



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 130/255 (50%), Gaps = 20/255 (7%)

Query: 123 DIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQPWPPG-DIKQIS---VPVR 175
           D+ +P R    L  R V   AAG  H+  +T +G ++  G        ++Q S    P R
Sbjct: 20  DVFVP-RLVKGLKSRDVVNLAAGALHTAAVTSDGELYVMGSNEESQLGVRQRSDALAPTR 78

Query: 176 VQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGL 232
           V  LEQ  V+ +A G  H LA+ + GA+ A+G+ EYGQ+G G    R + P  V+ L  +
Sbjct: 79  VTALEQFQVQRVACGPAHTLAVVDGGAVAAFGSAEYGQVGLGPCGARVELPRVVKDLRSM 138

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
            +V +AAGG H+ AL+  G V+  G G  G LG G  + +   VP+ ++ L    +VQ++
Sbjct: 139 HIVRVAAGGSHTLALSSTGGVFSCGNGSFGALGRGTTEGND--VPRPISRLWPLGVVQIA 196

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
           CG  HS A+T DG + ++GRG H  L        G       + P P  A  G+    + 
Sbjct: 197 CGENHSAAITADGRVLTWGRGKHRLL---PAFHCGHGDFENCSTPKPVQALKGI----VG 249

Query: 353 KLVACGGRHTLAIVE 367
           + V+CG  HT+ + E
Sbjct: 250 RQVSCGDDHTVLLTE 264



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 34/275 (12%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------------ 57
           +G G+ GQLG G+ E+     +VK L+   V ++ AG+ ++ A+  DG            
Sbjct: 5   FGRGDMGQLGDGSTEDVFVPRLVKGLKSRDVVNLAAGALHTAAVTSDGELYVMGSNEESQ 64

Query: 58  ---KTKTENI-PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113
              + +++ + P++V AL   ++ + A G  H LAV D G   A+G  EYGQ G  P   
Sbjct: 65  LGVRQRSDALAPTRVTALEQFQVQRVACGPAHTLAVVDGGAVAAFGSAEYGQVGLGP--- 121

Query: 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ 169
               R+    +V   R    + + +VAAGG+H++ L+  G V++ G         G  + 
Sbjct: 122 -CGARVELPRVVKDLR---SMHIVRVAAGGSHTLALSSTGGVFSCGNGSFGALGRGTTEG 177

Query: 170 ISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL-----GTGDTQPRSQ 222
             VP  +  L    V  IA G  H+ A+  DG +  WG  ++  L     G GD +  S 
Sbjct: 178 NDVPRPISRLWPLGVVQIACGENHSAAITADGRVLTWGRGKHRLLPAFHCGHGDFENCST 237

Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           P PVQ L G+    ++ G  H+  LT+DG VY WG
Sbjct: 238 PKPVQALKGIVGRQVSCGDDHTVLLTEDGSVYAWG 272



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 13/165 (7%)

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           +W +G  + GQLG G T+    P  V+GL    +V++AAG  H+ A+T DGE+Y  G  E
Sbjct: 2   VWVFGRGDMGQLGDGSTEDVFVPRLVKGLKSRDVVNLAAGALHTAAVTSDGELYVMGSNE 61

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
             +LG     +S  + P +V  L    + +V+CG  H++A+   G + +FG  ++G++G 
Sbjct: 62  ESQLGV--RQRSDALAPTRVTALEQFQVQRVACGPAHTLAVVDGGAVAAFGSAEYGQVGL 119

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G     G  +E+P  +   R+         I + VA GG HTLA+
Sbjct: 120 G---PCGARVELPRVVKDLRSM-------HIVR-VAAGGSHTLAL 153



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 36/233 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S   +   GS E+ QLG+    +      V ALE ++V+ V  G  ++LA+ D G   
Sbjct: 48  VTSDGELYVMGSNEESQLGVRQRSDALAPTRVTALEQFQVQRVACGPAHTLAVVDGGAVA 107

Query: 61  TE-----------------NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                               +P  V  L +  IV+ A GG H LA+   G  ++ G   +
Sbjct: 108 AFGSAEYGQVGLGPCGARVELPRVVKDLRSMHIVRVAAGGSHTLALSSTGGVFSCGNGSF 167

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---- 159
           G  G      +D  R + R  + P      L V Q+A G  HS  +T +G V TWG    
Sbjct: 168 GALGRGTTEGNDVPRPISR--LWP------LGVVQIACGENHSAAITADGRVLTWGRGKH 219

Query: 160 QPWPP-----GDIKQISVPVRVQGLEQV--KLIAVGAFHNLALQEDGALWAWG 205
           +  P      GD +  S P  VQ L+ +  + ++ G  H + L EDG+++AWG
Sbjct: 220 RLLPAFHCGHGDFENCSTPKPVQALKGIVGRQVSCGDDHTVLLTEDGSVYAWG 272



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EV+ +GRG+ G+L  GD       VP+ V  L   D+V ++ G  H+ A+T DG ++  G
Sbjct: 1   EVWVFGRGDMGQL--GDGSTEDVFVPRLVKGLKSRDVVNLAAGALHTAAVTSDGELYVMG 58

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
             +  +LG  ++     P  V                ++  + VACG  HTLA+V+
Sbjct: 59  SNEESQLGVRQRSDALAPTRVT------------ALEQFQVQRVACGPAHTLAVVD 102


>gi|114565730|ref|YP_752884.1| alpha-tubulin suppressor-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336665|gb|ABI67513.1| Alpha-tubulin suppressor and related RCC1 domain-containing
           proteins-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 726

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 141/312 (45%), Gaps = 49/312 (15%)

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP 132
           N    Q A G WH LAV + G  + WG NE GQ G  P     T          PQ+   
Sbjct: 108 NEGFKQVAAGRWHTLAVKNDGTVWGWGNNEKGQLGNLPLGPHST----------PQQIPN 157

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRVQG----- 178
              ++ VA G   S+ L  +G VW WG      D  ++         + P +V+G     
Sbjct: 158 LQNMKAVACGEFFSLALNNDGTVWAWGN----NDGNELGRGATGPFYNNPEKVKGPGGTG 213

Query: 179 -LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
            L+ V  IA G FH LAL+ DG +WAWG+  +G LG G D      P+ V  L+G+  +D
Sbjct: 214 YLDNVTAIACGRFHGLALKSDGTVWAWGDGSWGTLGNGEDFSEEVYPVRVLNLTGVKSID 273

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN----LLAGEDIVQVS 292
             AG + S AL +DG V+ WG    G             +PQ+V     L    ++  ++
Sbjct: 274 --AGDYFSLALKNDGTVWAWGGRGIGGQLGDGEVDDFVNIPQQVKGLNGLGNLNNVEAIT 331

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
           CG  HS+AL  +G I ++G  ++GRLG G   ++  P      +P       GV      
Sbjct: 332 CGINHSLALKDNGTILAWGE-NYGRLGDGDATSSESP------VPVLTQDISGV------ 378

Query: 353 KLVACGGRHTLA 364
             +A GG H+LA
Sbjct: 379 VAIAAGGEHSLA 390



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 20/298 (6%)

Query: 78  QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVR 137
           Q A G     A+ +  + + WG + YGQ G      D   R  +    +          +
Sbjct: 53  QVAAGEATSFALREDQKLWGWGIDNYGQVGNGKIIVDGDERNGQETPYLLTEKGFNEGFK 112

Query: 138 QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI-----SVPVRVQGLEQVKLIAVGAFHN 192
           QVAAG  H++ +  +G VW WG     G +  +     S P ++  L+ +K +A G F +
Sbjct: 113 QVAAGRWHTLAVKNDGTVWGWGNN-EKGQLGNLPLGPHSTPQQIPNLQNMKAVACGEFFS 171

Query: 193 LALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQGLSGLTLVD----IAAGGWHSTAL 247
           LAL  DG +WAWGNN+  +LG G T P  + P  V+G  G   +D    IA G +H  AL
Sbjct: 172 LALNNDGTVWAWGNNDGNELGRGATGPFYNNPEKVKGPGGTGYLDNVTAIACGRFHGLAL 231

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
             DG V+ WG G  G LG G+ D S ++ P +V  L G  +  +  G   S+AL  DG +
Sbjct: 232 KSDGTVWAWGDGSWGTLGNGE-DFSEEVYPVRVLNLTG--VKSIDAGDYFSLALKNDGTV 288

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +++G    G      +V      +  +NIP      +G+      + + CG  H+LA+
Sbjct: 289 WAWGGRGIGGQLGDGEV------DDFVNIPQQVKGLNGLGNLNNVEAITCGINHSLAL 340



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 147/353 (41%), Gaps = 61/353 (17%)

Query: 10  WGSGEDGQLGIG---------NNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           WG    GQ+G G         N +E  ++   K       + V AG  ++LA+ +DG   
Sbjct: 73  WGIDNYGQVGNGKIIVDGDERNGQETPYLLTEKGFNE-GFKQVAAGRWHTLAVKNDGTVW 131

Query: 58  ------KTKTENIP-------SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                 K +  N+P        Q+  L N K V  A G +  LA+++ G  +AWG N+  
Sbjct: 132 GWGNNEKGQLGNLPLGPHSTPQQIPNLQNMKAV--ACGEFFSLALNNDGTVWAWGNNDGN 189

Query: 105 QCG--------EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           + G          PE+    G     D V    C           G  H + L  +G VW
Sbjct: 190 ELGRGATGPFYNNPEKVKGPGGTGYLDNVTAIAC-----------GRFHGLALKSDGTVW 238

Query: 157 TWGQ-PWPP----GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY-- 209
            WG   W       D  +   PVRV  L  VK I  G + +LAL+ DG +WAWG      
Sbjct: 239 AWGDGSWGTLGNGEDFSEEVYPVRVLNLTGVKSIDAGDYFSLALKNDGTVWAWGGRGIGG 298

Query: 210 ----GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
               G++      P+         +   +  I  G  HS AL D+G +  WG   +GRLG
Sbjct: 299 QLGDGEVDDFVNIPQQVKGLNGLGNLNNVEAITCGINHSLALKDNGTILAWGE-NYGRLG 357

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            GD   S   VP     ++G  +V ++ GG HS+A   DG ++++G   H +L
Sbjct: 358 DGDATSSESPVPVLTQDISG--VVAIAAGGEHSLARKNDGTVWAWGSNHHYQL 408



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 145/317 (45%), Gaps = 56/317 (17%)

Query: 6   SIIAWGSGEDGQLG---IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT--- 59
           ++  WG+ E GQLG   +G +   + +  ++ +     ++V  G   SLA+ +DG     
Sbjct: 129 TVWGWGNNEKGQLGNLPLGPHSTPQQIPNLQNM-----KAVACGEFFSLALNNDGTVWAW 183

Query: 60  --------------KTENIPSQVNALSNT----KIVQAAIGGWHCLAVDDQGRAYAWGGN 101
                            N P +V     T     +   A G +H LA+   G  +AWG  
Sbjct: 184 GNNDGNELGRGATGPFYNNPEKVKGPGGTGYLDNVTAIACGRFHGLALKSDGTVWAWGDG 243

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
            +G  G   +  ++         V P R      V+ + AG   S+ L  +G VW WG  
Sbjct: 244 SWGTLGNGEDFSEE---------VYPVRVLNLTGVKSIDAGDYFSLALKNDGTVWAWGGR 294

Query: 162 WP-----PGDIKQ-ISVPVRVQGLEQ------VKLIAVGAFHNLALQEDGALWAWGNNEY 209
                   G++   +++P +V+GL        V+ I  G  H+LAL+++G + AWG N Y
Sbjct: 295 GIGGQLGDGEVDDFVNIPQQVKGLNGLGNLNNVEAITCGINHSLALKDNGTILAWGEN-Y 353

Query: 210 GQLGTGDTQPRSQPIPV--QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           G+LG GD      P+PV  Q +SG+  V IAAGG HS A  +DG V+ WG   H +L  G
Sbjct: 354 GRLGDGDATSSESPVPVLTQDISGV--VAIAAGGEHSLARKNDGTVWAWGSNHHYQL-TG 410

Query: 268 DNDKSSKMVPQKVNLLA 284
           DND    +  + + LLA
Sbjct: 411 DNDSGVPVQVEGIPLLA 427



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 25/220 (11%)

Query: 128 QRCAP----KLIVRQVAAGGTHSVVLTREGHVWTW----------GQPWPPGDIK---QI 170
           + C+P     LI  QVAAG   S  L  +  +W W          G+    GD +   + 
Sbjct: 39  RSCSPVKGTDLIEPQVAAGEATSFALREDQKLWGWGIDNYGQVGNGKIIVDGDERNGQET 98

Query: 171 SVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
              +  +G  E  K +A G +H LA++ DG +W WGNNE GQLG     P S P  +  L
Sbjct: 99  PYLLTEKGFNEGFKQVAAGRWHTLAVKNDGTVWGWGNNEKGQLGNLPLGPHSTPQQIPNL 158

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG---- 285
             +  V  A G + S AL +DG V+ WG  +   LG G         P+KV    G    
Sbjct: 159 QNMKAV--ACGEFFSLALNNDGTVWAWGNNDGNELGRGATGPFYNN-PEKVKGPGGTGYL 215

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
           +++  ++CG  H +AL  DG ++++G G  G LG G   +
Sbjct: 216 DNVTAIACGRFHGLALKSDGTVWAWGDGSWGTLGNGEDFS 255



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 89/205 (43%), Gaps = 38/205 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
           + S  ++ AWG G  G LG G +   E V  V+ L    V+S+ AG   SLA+ +DG   
Sbjct: 231 LKSDGTVWAWGDGSWGTLGNGEDFSEE-VYPVRVLNLTGVKSIDAGDYFSLALKNDGTVW 289

Query: 60  -----------------KTENIPSQVN---ALSNTKIVQAAIGGW-HCLAVDDQGRAYAW 98
                               NIP QV     L N   V+A   G  H LA+ D G   AW
Sbjct: 290 AWGGRGIGGQLGDGEVDDFVNIPQQVKGLNGLGNLNNVEAITCGINHSLALKDNGTILAW 349

Query: 99  GGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           G N YG+ G+ +    +    +L +DI           V  +AAGG HS+    +G VW 
Sbjct: 350 GEN-YGRLGDGDATSSESPVPVLTQDIS---------GVVAIAAGGEHSLARKNDGTVWA 399

Query: 158 WG---QPWPPGDIKQISVPVRVQGL 179
           WG        GD     VPV+V+G+
Sbjct: 400 WGSNHHYQLTGD-NDSGVPVQVEGI 423


>gi|168037867|ref|XP_001771424.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677342|gb|EDQ63814.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 465

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 37/255 (14%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQGL----------- 179
           +  VAAGG H++ L+  GHVW WG     Q      ++ +S P ++  L           
Sbjct: 204 IASVAAGGRHTLALSDVGHVWAWGYGGDGQLGLGSRMRIVSSPQQIPCLNLTEKAVARSG 263

Query: 180 -----EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
                + +K IA G  H+  + + GAL  +G   +GQ+G G T+    P  V  + GL +
Sbjct: 264 VPIPGKCIKAIACGGRHSAVVTDAGALLTFGWGLHGQVGQGSTEDELSPCCVSTIGGLRI 323

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN--LLAGEDIVQVS 292
           V IAAG WH+  +TD G+VY +G  + G+LG G N  ++++ P+ ++  LL  E  V+V+
Sbjct: 324 VGIAAGLWHTLCITDVGDVYAFGGNQFGQLGVGGN--AAELSPRMIDAPLLEDESCVEVA 381

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
           CG  HS  LT  G IF++G   +G+LG G       P++V +N        DG      A
Sbjct: 382 CGARHSAVLTGSGKIFAWGWNKYGQLGLGDCNNRDLPVQVTMN--------DGGR----A 429

Query: 353 KLVACGGRHTLAIVE 367
             +ACG  HTLA V 
Sbjct: 430 ASIACGWWHTLASVH 444



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 150/357 (42%), Gaps = 57/357 (15%)

Query: 46  GSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY-- 103
           GS   L  C     K + +P      +++ I+QAA G  HC AV   G  Y WG +E   
Sbjct: 54  GSTTELGQCYLISGKQQEVPEPYLLPTDSPIIQAAGGWAHCAAVTGNGEVYTWGWSECVP 113

Query: 104 ----------GQCGEE---PERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVV 148
                      Q  E+   P+    + ++L R+ V   R    P  +V +V       VV
Sbjct: 114 SVTLNAVEESEQVQEDDIPPDVPGTSLQLLSRNNVNAARSEPLPSSVVEEVLK--KRKVV 171

Query: 149 LTREGHVWTWGQPWPP--GDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAW 204
              +G     G P  P   D    S P  V     +++  +A G  H LAL + G +WAW
Sbjct: 172 SFEDG-----GSPESPTAADENVFSPPFLVNLDAGIRIASVAAGGRHTLALSDVGHVWAW 226

Query: 205 GNNEYGQLGTGDTQ---PRSQPIPVQGLS------------GLTLVDIAAGGWHSTALTD 249
           G    GQLG G         Q IP   L+            G  +  IA GG HS  +TD
Sbjct: 227 GYGGDGQLGLGSRMRIVSSPQQIPCLNLTEKAVARSGVPIPGKCIKAIACGGRHSAVVTD 286

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
            G +  +G G HG++G G  +   ++ P  V+ + G  IV ++ G  H++ +T  G +++
Sbjct: 287 AGALLTFGWGLHGQVGQGSTED--ELSPCCVSTIGGLRIVGIAAGLWHTLCITDVGDVYA 344

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV-PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           FG    G+LG G     G   E+ P  I AP    +          VACG RH+  +
Sbjct: 345 FGGNQFGQLGVG-----GNAAELSPRMIDAPLLEDESCVE------VACGARHSAVL 390



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 105/269 (39%), Gaps = 83/269 (30%)

Query: 9   AWGSGEDGQLGIGN-----NEEREWVC-------VVKALEPYK---VRSVVAGSRNSLAI 53
           AWG G DGQLG+G+     +  ++  C       V ++  P     ++++  G R+S  +
Sbjct: 225 AWGYGGDGQLGLGSRMRIVSSPQQIPCLNLTEKAVARSGVPIPGKCIKAIACGGRHSAVV 284

Query: 54  CD----------------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
            D                 G T+ E  P  V+ +   +IV  A G WH L + D G  YA
Sbjct: 285 TDAGALLTFGWGLHGQVGQGSTEDELSPCCVSTIGGLRIVGIAAGLWHTLCITDVGDVYA 344

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           +GGN++GQ G      + + R++   ++  + C       +VA G  HS VLT  G ++ 
Sbjct: 345 FGGNQFGQLGVGGNAAELSPRMIDAPLLEDESCV------EVACGARHSAVLTGSGKIFA 398

Query: 158 WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           WG  W                                            N+YGQLG GD 
Sbjct: 399 WG--W--------------------------------------------NKYGQLGLGDC 412

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             R  P+ V    G     IA G WH+ A
Sbjct: 413 NNRDLPVQVTMNDGGRAASIACGWWHTLA 441



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQ 328
           D++    P  VNL AG  I  V+ GG H++AL+  GH++++G G  G+LG G ++     
Sbjct: 186 DENVFSPPFLVNLDAGIRIASVAAGGRHTLALSDVGHVWAWGYGGDGQLGLGSRMRIVSS 245

Query: 329 PMEVP-INIPAPRNAGDGVDRR-WIAKLVACGGRHTLAIVE 367
           P ++P +N+     A  GV       K +ACGGRH+  + +
Sbjct: 246 PQQIPCLNLTEKAVARSGVPIPGKCIKAIACGGRHSAVVTD 286


>gi|351711665|gb|EHB14584.1| Putative E3 ubiquitin-protein ligase HERC3 [Heterocephalus glaber]
          Length = 1051

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 128/266 (48%), Gaps = 38/266 (14%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE--RKDDTGRILRR 122
           P     +S+  + + A GG H + + + G  Y  G N  GQ G E E  + +  G +  +
Sbjct: 25  PQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQ 84

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
            I+             VA G +HS+ L+ +G +++WG     Q         ++VP  +Q
Sbjct: 85  HII------------HVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQ 132

Query: 178 GLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTL 234
            L Q  ++ V  G +H LAL  DG  + WG N +GQLG G +   ++ P  V+ L G+ L
Sbjct: 133 KLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFSSQASPQRVRSLEGIPL 192

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN--------DK--------SSKMVPQ 278
             +AAGG HS AL+  G V+GWG    G+LG  D         DK        S++  P 
Sbjct: 193 AQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKGIKQGALDKTENIRGLYSNRESPC 252

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRD 304
            V LL  + +V +SCG  H+  LT++
Sbjct: 253 HVKLLRTQKVVYISCGDEHTAVLTKE 278



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           V++VA GG HSV L  +G V+T G       G  ++ + P ++  L  + +  +A G  H
Sbjct: 36  VKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADQHIIHVACGESH 95

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
           +LAL + G L++WG    GQLG   T+   + P  +Q L+  T++ ++ G WH  AL  D
Sbjct: 96  SLALSDQGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAAD 155

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G+ + WG+  HG+LG G  + SS+  PQ+V  L G  + QV+ GG HS AL+  G +F +
Sbjct: 156 GQFFTWGKNSHGQLGLG-KEFSSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGW 214

Query: 311 GRGDHGRLG 319
           G  + G+LG
Sbjct: 215 GMNNAGQLG 223



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 17/213 (7%)

Query: 156 WTWGQPWPPGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           W+ GQP    +++ I    +V G      VK +A G  H++ L EDG ++  G N  GQL
Sbjct: 7   WSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQL 66

Query: 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
           G    +  ++P  +  L+   ++ +A G  HS AL+D G+++ WG G  G+LG    + S
Sbjct: 67  G--HEREGNKPEQIGALADQHIIHVACGESHSLALSDQGQLFSWGAGSDGQLGLMTTEDS 124

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
              VP+ +  L  + I+QVSCG  H +AL  DG  F++G+  HG+LG G++ ++      
Sbjct: 125 VA-VPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFSSQAS--- 180

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
               P    + +G+    +A+ VA GG H+ A+
Sbjct: 181 ----PQRVRSLEGIP---LAQ-VAAGGAHSFAL 205



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 36/175 (20%)

Query: 7   IIAWGSGEDGQLGI---GNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----- 58
           +   G    GQLG    GN  E+     + AL    +  V  G  +SLA+ D G+     
Sbjct: 55  VYTCGLNTKGQLGHEREGNKPEQ-----IGALADQHIIHVACGESHSLALSDQGQLFSWG 109

Query: 59  ---------TKTEN---IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                      TE+   +P  +  L+   I+Q + G WHCLA+   G+ + WG N +GQ 
Sbjct: 110 AGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQL 169

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWG 159
           G   E               PQR      + + QVAAGG HS  L+  G V+ WG
Sbjct: 170 GLGKEFSSQAS---------PQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWG 215



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG    G+ G   N +     PQ    ++   + +V+CGG HSV L  DG +++ G    
Sbjct: 4   WGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTK 63

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           G+LG+ R+               P   G   D+  I   VACG  H+LA+
Sbjct: 64  GQLGHEREGN------------KPEQIGALADQHIIH--VACGESHSLAL 99


>gi|159036732|ref|YP_001535985.1| cell wall anchor domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157915567|gb|ABV96994.1| LPXTG-motif cell wall anchor domain [Salinispora arenicola CNS-205]
          Length = 566

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 150/362 (41%), Gaps = 41/362 (11%)

Query: 2   ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK--- 58
           A T + +AWG  ++GQLG G          V       V ++  G  +SLA+   G    
Sbjct: 53  AVTDTALAWGENDEGQLGNGGTTNTNEPTAVSLPSGTLVTAIAGGDGHSLALTSTGSVLA 112

Query: 59  -------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        T     P  V+  + T++   A G  H LA+   G   AWG N  GQ
Sbjct: 113 WGDNSDGQLGDGTTTDTTTPVAVDLPTGTEVTAIAAGNDHSLALTSTGSVLAWGDNSDGQ 172

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
            G+               + +P           ++AG  +S+ L+  G  + WG      
Sbjct: 173 LGDGTTTD----TSTPVTVDLPTTTT----ATAISAGADYSLSLSSTGGAFAWGN----N 220

Query: 166 DIKQI--------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTG 215
           D  Q+        S PV V       L+AV  G+ H+LA+  D A  AWG+N  GQLG G
Sbjct: 221 DQGQLGDETTLSTSTPVNVALQPGTTLLAVAGGSGHSLAITSDNAAIAWGDNSQGQLGDG 280

Query: 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
            T     P+ V    G  +  +AAG  HS ALT  G  + WG    G+LG G N  SS  
Sbjct: 281 TTTDALAPVNVALAPGTEITAVAAGRLHSVALTSAGTAFTWGNNASGQLGNGTNTTSST- 339

Query: 276 VPQKVNLLAGEDIVQVSC-GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
            P  V+L  G  +  ++     H+VA+T      ++G    G+LG    +T+     +P+
Sbjct: 340 -PVAVSLPTGTTLTAIAAHNSNHTVAITNTETALAWGDNSFGQLGAEITITSSSNTPIPV 398

Query: 335 NI 336
           N+
Sbjct: 399 NL 400



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 136/325 (41%), Gaps = 33/325 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + ST S++AWG   DGQLG G   +      V      +V ++ AG+ +SLA+   G   
Sbjct: 104 LTSTGSVLAWGDNSDGQLGDGTTTDTTTPVAVDLPTGTEVTAIAAGNDHSLALTSTGSVL 163

Query: 61  T--ENIPSQ--------------VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
              +N   Q              V+  + T     + G  + L++   G A+AWG N+ G
Sbjct: 164 AWGDNSDGQLGDGTTTDTSTPVTVDLPTTTTATAISAGADYSLSLSSTGGAFAWGNNDQG 223

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ---- 160
           Q G+E          L     +     P   +  VA G  HS+ +T +     WG     
Sbjct: 224 QLGDE--------TTLSTSTPVNVALQPGTTLLAVAGGSGHSLAITSDNAAIAWGDNSQG 275

Query: 161 PWPPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               G       PV V    G E +  +A G  H++AL   G  + WGNN  GQLG G  
Sbjct: 276 QLGDGTTTDALAPVNVALAPGTE-ITAVAAGRLHSVALTSAGTAFTWGNNASGQLGNGTN 334

Query: 218 QPRSQPIPVQGLSGLTLVDIAA-GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
              S P+ V   +G TL  IAA    H+ A+T+      WG    G+LG      SS   
Sbjct: 335 TTSSTPVAVSLPTGTTLTAIAAHNSNHTVAITNTETALAWGDNSFGQLGAEITITSSSNT 394

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVAL 301
           P  VNL AG  +   + G  HS+AL
Sbjct: 395 PIPVNLAAGTTVTTTAVGNNHSLAL 419


>gi|421100544|ref|ZP_15561167.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200901122]
 gi|410796347|gb|EKR98483.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200901122]
          Length = 506

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 142/330 (43%), Gaps = 46/330 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 193 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRT--AGNRQP---------- 230

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  + +   V  A G  H L +   G   ++G N  GQ G      +     +
Sbjct: 231 ----PTLVPGIDDA--VMGAYGFNHALILKSDGTVVSFGQNNVGQLGNGANDLNADSFSM 284

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
               V+  +      V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 285 NPVAVVGLKD-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   PIP Q L+
Sbjct: 339 TPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLGIGGNGSPNPTPIPTQVLN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            L    + AGG  S ++   GEV GWG  G    L  G+ +      P K  ++  ++++
Sbjct: 399 ILNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNTLKVYEPNKA-VVGIDNVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
              CG TH+  L  +G I+ +G    G LG
Sbjct: 458 HFGCGATHNFVLLGNGEIYGWGWNFKGSLG 487



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 129/289 (44%), Gaps = 39/289 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+     GG H   + + G  Y  G N +GQ G      DD       D+++
Sbjct: 122 EVNFYFGTKL---GAGGAHSGFLKN-GEVYTTGRNNFGQLGTGNSTGDD-----NNDVIV 172

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                  +    +     +S+ + + G V+TWG               P  P        
Sbjct: 173 KLNSISNIF--SIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRTAGNRQP 230

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-----QPIPVQ 227
           P  V G++   + A G  H L L+ DG + ++G N  GQLG G     +      P+ V 
Sbjct: 231 PTLVPGIDDAVMGAYGFNHALILKSDGTVVSFGQNNVGQLGNGANDLNADSFSMNPVAVV 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAG 285
           GL    ++ + AG  HS ALT++GEVY WGR ++G LG G      +++  P KV  L+G
Sbjct: 291 GLK--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQSTPVKVEGLSG 348

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
             I Q++ G  H +AL  DG I+S+G    G+LG G     G P   PI
Sbjct: 349 --IKQIANGRDHILALASDGKIYSWGLNASGQLGIGGN---GSPNPTPI 392



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------- 170
           R  + D  I Q+        ++ AGG HS  L + G V+T G+     +  Q+       
Sbjct: 110 RFKKPDGSILQKEVNFYFGTKLGAGGAHSGFL-KNGEVYTTGR----NNFGQLGTGNSTG 164

Query: 171 ----SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP----- 219
                V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P     
Sbjct: 165 DDNNDVIVKLNSISNIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRT 224

Query: 220 ---RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSS 273
              R  P  V G+    +   A G  H+  L  DG V  +G+   G+LG G ND    S 
Sbjct: 225 AGNRQPPTLVPGIDDAVMG--AYGFNHALILKSDGTVVSFGQNNVGQLGNGANDLNADSF 282

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
            M P  V ++  +D++QV  G  HS ALT +G ++ +GR  +G LG GR          P
Sbjct: 283 SMNP--VAVVGLKDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAAQSTP 340

Query: 334 INI 336
           + +
Sbjct: 341 VKV 343



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 108/261 (41%), Gaps = 43/261 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNE---EREWVCVVKALEPYKVRSVVAGSRNSLAICDDG 57
           + S  +++++G    GQLG G N+   +   +  V  +    V  V+AGS +S A+ ++G
Sbjct: 253 LKSDGTVVSFGQNNVGQLGNGANDLNADSFSMNPVAVVGLKDVIQVIAGSEHSAALTENG 312

Query: 58  K--------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +                       ++ P +V  LS  K  Q A G  H LA+   G+ Y+
Sbjct: 313 EVYVWGRNQYGNLGNGRLSAANAAQSTPVKVEGLSGIK--QIANGRDHILALASDGKIYS 370

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG N  GQ G         G        IP +    L    V AGGT S  + + G V  
Sbjct: 371 WGLNASGQLG-------IGGNGSPNPTPIPTQVLNILNASSVWAGGTQSFSILKSGEVKG 423

Query: 158 WGQPWPPGDIK-------QISVPVR-VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
           WG      ++        ++  P + V G++ V     GA HN  L  +G ++ WG N  
Sbjct: 424 WGANGNTANLAIGETNTLKVYEPNKAVVGIDNVIHFGCGATHNFVLLGNGEIYGWGWNFK 483

Query: 210 GQLGTGDTQPR---SQPIPVQ 227
           G LG  D Q     S P+ ++
Sbjct: 484 GSLGRQDLQANWGASNPVSIK 504


>gi|326677630|ref|XP_003200872.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Danio
           rerio]
          Length = 4647

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 177/397 (44%), Gaps = 71/397 (17%)

Query: 4   TTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEP------YKVRSVVAGSRNSLAICDDG 57
           T  +  WGS    QL  G  E        K L+P         + + AG   + ++  DG
Sbjct: 369 TVMVYVWGSNSSHQLAEGTLE--------KILQPKLAQGFSDAQMIEAGQYCTFSVSADG 420

Query: 58  KTK----------------TENIPSQV---NALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
             K                 +++P ++      +  K+  +     H LAV  +G  ++W
Sbjct: 421 AVKACGKGSYGRLGLGDSNNQSMPKKLVLEPPRTMRKVSSSKGSDGHTLAVTAEGEVFSW 480

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL--IVRQVAAGGTHSVVLTREGHVW 156
           G  +YG+ G          +I++          P L  +V  V+AG  HS  +T +G ++
Sbjct: 481 GDGDYGKLGHGNSATQKYPKIIQ---------GPLLGKVVVCVSAGYRHSAAVTNDGELY 531

Query: 157 TWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAVGAFHNLALQEDGAL-WAWGNN 207
           TWG+    GD  ++        +VP  V+ +  V  +A G+ H +A+ +DG + W++G  
Sbjct: 532 TWGE----GDFGRLGHSDSHSRNVPTLVKDISGVGQVACGSSHTIAVAQDGRIVWSFGGG 587

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           + G+LG GDT    +P  ++ L G  +  + AG   S ALT  G+V+ WG G    LG G
Sbjct: 588 DNGKLGHGDTNRVYRPKVIEALHGFIIRKVCAGSQSSLALTSAGQVFAWGCG--SCLGCG 645

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
            ++ +S + P+ +  L+   I+ +SCG +H +AL+ +  +F++G    G+ G G   T  
Sbjct: 646 SSETTS-LRPRLIEELSITKIIDISCGDSHCLALSHENEVFAWGNNAMGQCGQGHTST-- 702

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
                P+  P      +GV  + I      G  H+LA
Sbjct: 703 -----PVTKPKKVIGLEGVSIQQITA----GTSHSLA 730



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 171  SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            SVP     L Q + +  G      +Q +G + A G   YG+LG G++     P  +  L 
Sbjct: 3881 SVPTLAPSLSQTQQVVCGQNCTFLVQANGTVLAVGEGSYGRLGQGNSDDLYTPTIISALQ 3940

Query: 231  GLT---LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
            G     LV       HS ALT+ GEV+ WG G++G+LG G++++  +  P+++  L GE+
Sbjct: 3941 GYVVTQLVTSYGSDGHSLALTETGEVFSWGDGDYGKLGHGNSERQRR--PKQIEGLQGEE 3998

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            +VQ++CG  HS  +T DG +F+FG GD GRLG
Sbjct: 3999 VVQLACGFKHSAVVTADGKLFTFGSGDSGRLG 4030



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 24/221 (10%)

Query: 155 VWTWG----QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           V+ WG         G +++I  P   QG    ++I  G +   ++  DGA+ A G   YG
Sbjct: 372 VYVWGSNSSHQLAEGTLEKILQPKLAQGFSDAQMIEAGQYCTFSVSADGAVKACGKGSYG 431

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW---HSTALTDDGEVYGWGRGEHGRLGFG 267
           +LG GD+  +S P  +      T+  +++      H+ A+T +GEV+ WG G++G+LG G
Sbjct: 432 RLGLGDSNNQSMPKKLVLEPPRTMRKVSSSKGSDGHTLAVTAEGEVFSWGDGDYGKLGHG 491

Query: 268 DNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
           ++  +++  P+ +   L G+ +V VS G  HS A+T DG ++++G GD GRLG+    + 
Sbjct: 492 NS--ATQKYPKIIQGPLLGKVVVCVSAGYRHSAAVTNDGELYTWGEGDFGRLGHSDSHSR 549

Query: 327 GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                   N+P       GV +      VACG  HT+A+ +
Sbjct: 550 --------NVPTLVKDISGVGQ------VACGSSHTIAVAQ 576



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 57/333 (17%)

Query: 6   SIIAWGSGEDGQLGIG--NNEEREWVCVVKALEPYKVRSVVAGSRNS----LAICDDGK- 58
           ++ A G G  G+LG+G  NN+      V   LEP +    V+ S+ S    LA+  +G+ 
Sbjct: 421 AVKACGKGSYGRLGLGDSNNQSMPKKLV---LEPPRTMRKVSSSKGSDGHTLAVTAEGEV 477

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNE 102
                          + T+  P  +      K+V     G+ H  AV + G  Y WG  +
Sbjct: 478 FSWGDGDYGKLGHGNSATQKYPKIIQGPLLGKVVVCVSAGYRHSAAVTNDGELYTWGEGD 537

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGH-VW 156
           +G+ G                     R  P L+     V QVA G +H++ + ++G  VW
Sbjct: 538 FGRLGHSDSHS---------------RNVPTLVKDISGVGQVACGSSHTIAVAQDGRIVW 582

Query: 157 TWGQ----PWPPGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
           ++G         GD  ++  P  ++ L    ++ +  G+  +LAL   G ++AWG     
Sbjct: 583 SFGGGDNGKLGHGDTNRVYRPKVIEALHGFIIRKVCAGSQSSLALTSAGQVFAWGCGSC- 641

Query: 211 QLGTGDTQPRS-QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
            LG G ++  S +P  ++ LS   ++DI+ G  H  AL+ + EV+ WG    G+ G G +
Sbjct: 642 -LGCGSSETTSLRPRLIEELSITKIIDISCGDSHCLALSHENEVFAWGNNAMGQCGQG-H 699

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
             +    P+KV  L G  I Q++ G +HS+A T
Sbjct: 700 TSTPVTKPKKVIGLEGVSIQQITAGTSHSLAWT 732



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 31/171 (18%)

Query: 191  HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDD 250
            H+LAL E G +++WG+ +YG+LG G+++ + +P  ++GL G  +V +A G  HS  +T D
Sbjct: 3956 HSLALTETGEVFSWGDGDYGKLGHGNSERQRRPKQIEGLQGEEVVQLACGFKHSAVVTAD 4015

Query: 251  GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ-------------------- 290
            G+++ +G G+ GRL  G    S+KM+P++V  L G  I Q                    
Sbjct: 4016 GKLFTFGSGDSGRL--GQRSTSNKMIPERVTALDGHHIGQRLIGLPDAMLKNHNRPQIIP 4073

Query: 291  ---------VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
                     ++ G  H +AL+  G ++++G     +LG G      +P+ V
Sbjct: 4074 ALEGVFIEDIAVGCEHILALSNTGDVYAWGCNCEAQLGLGHSNPVKEPILV 4124



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 117/264 (44%), Gaps = 48/264 (18%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVA--GSR-NSLAICDDGK---- 58
            +++A G G  G+LG GN+++     ++ AL+ Y V  +V   GS  +SLA+ + G+    
Sbjct: 3910 TVLAVGEGSYGRLGQGNSDDLYTPTIISALQGYVVTQLVTSYGSDGHSLALTETGEVFSW 3969

Query: 59   ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        ++ +  P Q+  L   ++VQ A G  H   V   G+ + +G  + G+ 
Sbjct: 3970 GDGDYGKLGHGNSERQRRPKQIEGLQGEEVVQLACGFKHSAVVTADGKLFTFGSGDSGRL 4029

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166
            G+                   +  + K+I  +V A   H        H+       P   
Sbjct: 4030 GQ-------------------RSTSNKMIPERVTALDGH--------HIGQRLIGLPDAM 4062

Query: 167  IKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            +K  + P  +  LE V +  IAVG  H LAL   G ++AWG N   QLG G + P  +PI
Sbjct: 4063 LKNHNRPQIIPALEGVFIEDIAVGCEHILALSNTGDVYAWGCNCEAQLGLGHSNPVKEPI 4122

Query: 225  PVQGLSGLTLVDIAAGGWHSTALT 248
             V  L G  +  I+AG  HS+A T
Sbjct: 4123 LVTTLQGKNIRQISAGRCHSSAWT 4146



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 123/280 (43%), Gaps = 50/280 (17%)

Query: 61   TENIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI 119
            + ++P+   +LS T   Q  + G +C   V   G   A G   YG+ G+       T  I
Sbjct: 3879 SASVPTLAPSLSQT---QQVVCGQNCTFLVQANGTVLAVGEGSYGRLGQGNSDDLYTPTI 3935

Query: 120  LR--RDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP 173
            +   +  V+ Q      +V    + G HS+ LT  G V++WG         G+ ++   P
Sbjct: 3936 ISALQGYVVTQ------LVTSYGSDG-HSLALTETGEVFSWGDGDYGKLGHGNSERQRRP 3988

Query: 174  VRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR----------- 220
             +++GL  E+V  +A G  H+  +  DG L+ +G+ + G+LG   T  +           
Sbjct: 3989 KQIEGLQGEEVVQLACGFKHSAVVTADGKLFTFGSGDSGRLGQRSTSNKMIPERVTALDG 4048

Query: 221  ------------------SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
                              ++P  +  L G+ + DIA G  H  AL++ G+VY WG     
Sbjct: 4049 HHIGQRLIGLPDAMLKNHNRPQIIPALEGVFIEDIAVGCEHILALSNTGDVYAWGCNCEA 4108

Query: 263  RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            +LG G ++   +  P  V  L G++I Q+S G  HS A T
Sbjct: 4109 QLGLGHSNPVKE--PILVTTLQGKNIRQISAGRCHSSAWT 4146



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 201  LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
            ++ WGN  +GQL    T   S  +P    S      +  G   +  +  +G V   G G 
Sbjct: 3862 VYLWGNGRHGQLADAGT---SASVPTLAPSLSQTQQVVCGQNCTFLVQANGTVLAVGEGS 3918

Query: 261  HGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ-VSCGGT--HSVALTRDGHIFSFGRGDHGR 317
            +GRLG G++D      P  ++ L G  + Q V+  G+  HS+ALT  G +FS+G GD+G+
Sbjct: 3919 YGRLGQGNSDD--LYTPTIISALQGYVVTQLVTSYGSDGHSLALTETGEVFSWGDGDYGK 3976

Query: 318  LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            LG+G      +P ++           +G+    + +L ACG +H+  + 
Sbjct: 3977 LGHGNSERQRRPKQI-----------EGLQGEEVVQL-ACGFKHSAVVT 4013



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 45/152 (29%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
            +  T  + +WG G+ G+LG GN+E +     ++ L+  +V  +  G ++S  +  DGK  
Sbjct: 3960 LTETGEVFSWGDGDYGKLGHGNSERQRRPKQIEGLQGEEVVQLACGFKHSAVVTADGKLF 4019

Query: 59   --------------TKTENIPSQVNALSNTKIVQ-------------------------- 78
                          T  + IP +V AL    I Q                          
Sbjct: 4020 TFGSGDSGRLGQRSTSNKMIPERVTALDGHHIGQRLIGLPDAMLKNHNRPQIIPALEGVF 4079

Query: 79   ---AAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                A+G  H LA+ + G  YAWG N   Q G
Sbjct: 4080 IEDIAVGCEHILALSNTGDVYAWGCNCEAQLG 4111


>gi|269125261|ref|YP_003298631.1| regulator of chromosome condensation RCC1 [Thermomonospora curvata
           DSM 43183]
 gi|268310219|gb|ACY96593.1| regulator of chromosome condensation RCC1 [Thermomonospora curvata
           DSM 43183]
          Length = 443

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 162/364 (44%), Gaps = 50/364 (13%)

Query: 10  WGSG--EDGQLGIGNNEEREWVCVVKAL----EPYKVRSVVAGSRNSLAICDDGKT---- 59
           W SG  E+GQLG  + E    +  V  L        V +V AG R+SLA+  DG+     
Sbjct: 54  WSSGLNENGQLGRESREMDLSLGPVLGLGGKGRLRNVVAVAAGGRHSLAVLSDGRVVAWG 113

Query: 60  ------------KTENIPSQVNALSNTK-----IVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                       +    P  V A  + K      V  A      +A+   GR   WG  +
Sbjct: 114 ANDHGQLGDGTRRDSRHPVLVRAPGSGKGHLRGAVAVAADSDFSMALLKDGRVVTWGKGD 173

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP- 161
            GQ G    RK+    +L   ++ P    P   V Q+AA G   +VL ++G V  WG   
Sbjct: 174 AGQRGIG--RKEAP--LLPTVVLRPDGRKPLTDVVQIAADGRTELVLRKDGSVLAWGAND 229

Query: 162 ---WPPGDIKQISVPVRVQGL------EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                 G  KQ S+PVRV+GL        V  IA+G  H LAL  DG + AWG NE GQL
Sbjct: 230 YGMVGDGTRKQRSLPVRVRGLNGRRWLSGVSKIAIGGQHGLALLRDGRVVAWGRNELGQL 289

Query: 213 GTGDTQPRSQPIPVQGLSGL----TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           G G     + P PV G+ G      +V I+A   H+ ALT +  +  WG    G+LG G 
Sbjct: 290 GNGTRTDSTVPKPVSGVGGKGELSGIVAISAAEKHNFALTKNATLVAWGNNTAGQLGDGT 349

Query: 269 ---NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
               D    +V     LL G  + QV  G  H VA+  DG   S+G G  G+LG+G+++ 
Sbjct: 350 LTLRDTPVNVVGTHGPLLQG--VAQVHAGEAHGVAILSDGSALSWGAGRKGQLGWGKRLH 407

Query: 326 TGQP 329
             +P
Sbjct: 408 RSRP 411



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 139/282 (49%), Gaps = 37/282 (13%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +V  A GG H LAV   GR  AWG N++GQ G      D T R  R  +++    + K  
Sbjct: 90  VVAVAAGGRHSLAVLSDGRVVAWGANDHGQLG------DGTRRDSRHPVLVRAPGSGKGH 143

Query: 136 VR---QVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ-----------ISVPVRVQG--- 178
           +R    VAA    S+ L ++G V TWG+    GD  Q            +V +R  G   
Sbjct: 144 LRGAVAVAADSDFSMALLKDGRVVTWGK----GDAGQRGIGRKEAPLLPTVVLRPDGRKP 199

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT----L 234
           L  V  IA      L L++DG++ AWG N+YG +G G  + RS P+ V+GL+G      +
Sbjct: 200 LTDVVQIAADGRTELVLRKDGSVLAWGANDYGMVGDGTRKQRSLPVRVRGLNGRRWLSGV 259

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED----IVQ 290
             IA GG H  AL  DG V  WGR E G+LG G    S+  VP+ V+ + G+     IV 
Sbjct: 260 SKIAIGGQHGLALLRDGRVVAWGRNELGQLGNGTRTDST--VPKPVSGVGGKGELSGIVA 317

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +S    H+ ALT++  + ++G    G+LG G       P+ V
Sbjct: 318 ISAAEKHNFALTKNATLVAWGNNTAGQLGDGTLTLRDTPVNV 359



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 140/349 (40%), Gaps = 65/349 (18%)

Query: 3   STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-----VRSVVAGSRNSLAICDDG 57
           S   ++AWG+ + GQLG G   +     +V+A    K       +V A S  S+A+  DG
Sbjct: 105 SDGRVVAWGANDHGQLGDGTRRDSRHPVLVRAPGSGKGHLRGAVAVAADSDFSMALLKDG 164

Query: 58  KTKT----------------ENIPSQV----NALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +  T                  +P+ V         T +VQ A  G   L +   G   A
Sbjct: 165 RVVTWGKGDAGQRGIGRKEAPLLPTVVLRPDGRKPLTDVVQIAADGRTELVLRKDGSVLA 224

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-----------VRQVAAGGTHS 146
           WG N+YG  G+   +               QR  P  +           V ++A GG H 
Sbjct: 225 WGANDYGMVGDGTRK---------------QRSLPVRVRGLNGRRWLSGVSKIAIGGQHG 269

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG------LEQVKLIAVGAFHNLALQ 196
           + L R+G V  WG+        G     +VP  V G      L  +  I+    HN AL 
Sbjct: 270 LALLRDGRVVAWGRNELGQLGNGTRTDSTVPKPVSGVGGKGELSGIVAISAAEKHNFALT 329

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA---AGGWHSTALTDDGEV 253
           ++  L AWGNN  GQLG G    R  P+ V G  G  L  +A   AG  H  A+  DG  
Sbjct: 330 KNATLVAWGNNTAGQLGDGTLTLRDTPVNVVGTHGPLLQGVAQVHAGEAHGVAILSDGSA 389

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQ-KVNLLAGEDIVQVSCGGTHSVAL 301
             WG G  G+LG+G     S+  P   V+  A  D++  + G  H + L
Sbjct: 390 LSWGAGRKGQLGWGKRLHRSRPGPLITVDGRAPSDVMTAAAGERHLLLL 438



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 117/267 (43%), Gaps = 41/267 (15%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDT--------GRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           G  ++ G NE GQ G E    D +        G+   R++V             VAAGG 
Sbjct: 51  GEVWSSGLNENGQLGRESREMDLSLGPVLGLGGKGRLRNVV------------AVAAGGR 98

Query: 145 HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG-------LEQVKLIAVGAFHNL 193
           HS+ +  +G V  WG         G  +    PV V+        L     +A  +  ++
Sbjct: 99  HSLAVLSDGRVVAWGANDHGQLGDGTRRDSRHPVLVRAPGSGKGHLRGAVAVAADSDFSM 158

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV---QGLSGLT-LVDIAAGGWHSTALTD 249
           AL +DG +  WG  + GQ G G  +    P  V    G   LT +V IAA G     L  
Sbjct: 159 ALLKDGRVVTWGKGDAGQRGIGRKEAPLLPTVVLRPDGRKPLTDVVQIAADGRTELVLRK 218

Query: 250 DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED----IVQVSCGGTHSVALTRDG 305
           DG V  WG  ++G +G  D  +  + +P +V  L G      + +++ GG H +AL RDG
Sbjct: 219 DGSVLAWGANDYGMVG--DGTRKQRSLPVRVRGLNGRRWLSGVSKIAIGGQHGLALLRDG 276

Query: 306 HIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            + ++GR + G+LG G +  +  P  V
Sbjct: 277 RVVAWGRNELGQLGNGTRTDSTVPKPV 303


>gi|195345961|ref|XP_002039537.1| GM23028 [Drosophila sechellia]
 gi|194134763|gb|EDW56279.1| GM23028 [Drosophila sechellia]
          Length = 725

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 22/245 (8%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV---- 187
           V  +A G  HS  +T  GHV TWG+        GD +    P  V+ L   + I +    
Sbjct: 3   VADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGS 62

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G    L + +D  +W+WG+ +YG+LG G +     P  ++ L+GL +V +  G   S AL
Sbjct: 63  GDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQFSVAL 122

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T  G VY WG+G+  RLG G  D   +  P+KV  L G+ I+ ++ G  H VA +  G +
Sbjct: 123 TKSGAVYTWGKGDFHRLGHGSVDHVRR--PKKVAALQGKKIISIATGSLHCVACSDSGEV 180

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +++G  D G+LG G      +P  V             +  + I K V CG  HTLA+  
Sbjct: 181 YTWGDNDEGQLGDGTVTAIQRPRLVA-----------ALQGKHIVK-VTCGSAHTLALST 228

Query: 368 WQTEE 372
            Q  E
Sbjct: 229 SQLSE 233



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 22/237 (9%)

Query: 76  IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI 135
           +   A G  H  A+   G    WG   YG+ G       D+   LR  +V       + I
Sbjct: 3   VADIACGSAHSAAITASGHVLTWGKGRYGRLGH-----GDSEDQLRPKLV-EALLGYRAI 56

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVRVQGLEQVKLIAV 187
                +G   ++ +T + +VW+WG     GD  ++         +P +++ L  + ++ V
Sbjct: 57  DIACGSGDAQTLCITDDDNVWSWGD----GDYGKLGRGGSDGCKLPYKIESLAGLGVVKV 112

Query: 188 --GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST 245
             G+  ++AL + GA++ WG  ++ +LG G      +P  V  L G  ++ IA G  H  
Sbjct: 113 ECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHCV 172

Query: 246 ALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
           A +D GEVY WG  + G+L  GD   ++   P+ V  L G+ IV+V+CG  H++AL+
Sbjct: 173 ACSDSGEVYTWGDNDEGQL--GDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTLALS 227



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
           +++ DIA G  HS A+T  G V  WG+G +GRLG GD++   ++ P+ V  L G   + +
Sbjct: 1   MSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSE--DQLRPKLVEALLGYRAIDI 58

Query: 292 SCGG--THSVALTRDGHIFSFGRGDHGRLGYG 321
           +CG     ++ +T D +++S+G GD+G+LG G
Sbjct: 59  ACGSGDAQTLCITDDDNVWSWGDGDYGKLGRG 90



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 104/264 (39%), Gaps = 53/264 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--RNSLAICDD-------- 56
           ++ WG G  G+LG G++E++    +V+AL  Y+   +  GS    +L I DD        
Sbjct: 22  VLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGD 81

Query: 57  --------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   G +    +P ++ +L+   +V+   G    +A+   G  Y WG  ++ + G 
Sbjct: 82  GDYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGH 141

Query: 109 EPERKDDTGRI--LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
                   G +  +RR   +      K+I   +A G  H V  +  G V+TWG       
Sbjct: 142 --------GSVDHVRRPKKVAALQGKKII--SIATGSLHCVACSDSGEVYTWGDNDEGQL 191

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             G +  I  P  V  L+   ++ V  G+ H LAL                  T     R
Sbjct: 192 GDGTVTAIQRPRLVAALQGKHIVKVTCGSAHTLALS-----------------TSQLSER 234

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHS 244
            +P+P   L    + D+A    H+
Sbjct: 235 LRPLPNPPLEYDLVRDLAPEALHA 258


>gi|147920946|ref|YP_685246.1| regulator of chromosome condensation [Methanocella arvoryzae MRE50]
 gi|110620642|emb|CAJ35920.1| predicted regulator of chromosome condensation [Methanocella
           arvoryzae MRE50]
          Length = 441

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 144/332 (43%), Gaps = 63/332 (18%)

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
           T NI    +    ++ V     G+H LA+ + G  +AWG N  G CG           + 
Sbjct: 23  TVNISVADDTTDMSRFVSLQSSGFHTLAIGEDGSLWAWGSNGDGACG-----------VY 71

Query: 121 RRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP--PGDIKQISVPVRV 176
             D  +P+  R      V QVA   T S+ L  +G VW WG        D  ++ VPV+V
Sbjct: 72  SVDERVPEPVRVEGLSNVTQVACYFTDSMALLGDGTVWMWGGSSSNFKNDSTELYVPVQV 131

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR---SQPIPVQGLSGLT 233
            GL  VK IA G + +LAL++DG +WAWGNNEYG +G G    R   + P+ V GLSG+ 
Sbjct: 132 PGLTGVKQIACGQWCSLALKDDGTVWAWGNNEYGHMGDGTKASRIYYTTPVQVPGLSGIK 191

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRL---GFGD---------------------- 268
           +  IA        + ++G V+ WG+     +   G G+                      
Sbjct: 192 M--IACNAATMFVVDNNGTVWAWGKSHPAMVSWNGLGNKLYTTVPVQVIKQPGIVAITAN 249

Query: 269 ---------------NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
                           D +S   P    +    DI  ++  G H VAL +DG ++++G+ 
Sbjct: 250 DVQLCIVTENGKVWKKDYASNKTPTPDEIKGLRDIATIN-SGYHMVALEKDGSVYTWGKN 308

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
           DHG++G G       P +V  N+P  +    G
Sbjct: 309 DHGQIGDGTITYRTAPYKV--NVPPVKAVFSG 338



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 149/359 (41%), Gaps = 64/359 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR------SVVAGSRNSLAICDDGKT 59
           S+ AWGS  DG  G+ + +ER         EP +V        V     +S+A+  DG  
Sbjct: 56  SLWAWGSNGDGACGVYSVDER-------VPEPVRVEGLSNVTQVACYFTDSMALLGDGTV 108

Query: 60  -------------KTE-NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                         TE  +P QV  L+  K  Q A G W  LA+ D G  +AWG NEYG 
Sbjct: 109 WMWGGSSSNFKNDSTELYVPVQVPGLTGVK--QIACGQWCSLALKDDGTVWAWGNNEYGH 166

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP- 164
            G       D  +  R     P +      ++ +A       V+   G VW WG+  P  
Sbjct: 167 MG-------DGTKASRIYYTTPVQVPGLSGIKMIACNAATMFVVDNNGTVWAWGKSHPAM 219

Query: 165 ------GDIKQISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGD 216
                 G+    +VPV+V  ++Q  ++A+ A       + E+G +W             D
Sbjct: 220 VSWNGLGNKLYTTVPVQV--IKQPGIVAITANDVQLCIVTENGKVWK-----------KD 266

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
                 P P + + GL  +     G+H  AL  DG VY WG+ +HG++  GD   + +  
Sbjct: 267 YASNKTPTPDE-IKGLRDIATINSGYHMVALEKDGSVYTWGKNDHGQI--GDGTITYRTA 323

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           P KVN+     +  V  G   + A+  +G ++ +G  +  +LG G       P+++  N
Sbjct: 324 PYKVNV---PPVKAVFSGQFQTFAIGENGDLWGWGGDEVNQLGDGGGTDKTLPVKISFN 379


>gi|47212899|emb|CAF90789.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3089

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 173/369 (46%), Gaps = 59/369 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++S  S+ A G G  G+LG+G++  +  +  +   EP++    V+ S+ S     DG   
Sbjct: 428 ISSDGSVRACGKGSYGRLGLGDSNNQSTLKKL-TFEPHRAIKKVSSSKGS-----DG--- 478

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                   H LA   +G  ++WG  +YG+ G          +++
Sbjct: 479 ------------------------HTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLI 514

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
           +  +          +V  V+AG  HS  ++ +G ++TWG+        GD    ++P  V
Sbjct: 515 QGPL-------QGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGRLGHGDSNSRNIPTLV 567

Query: 177 QGLEQVKLIAVGAFHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           + +  V  ++ G+ H +AL +DG  +W++G  + G+LG GDT    +P  V+ L G+ + 
Sbjct: 568 KDISNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVVEALQGMFIR 627

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            + AG   S ALT  G+VY WG G    LG G ++ ++ + P+ +  LA   +V +S G 
Sbjct: 628 KVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSE-ATALRPKLIEELATTRVVDISIGD 684

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
           +H +AL+ D  ++++G    G+ G G   +TG     PI  P      DGV  + I    
Sbjct: 685 SHCLALSHDNEVYAWGNNSMGQCGQGN--STG-----PITKPKKVVGLDGVAIQQI---- 733

Query: 356 ACGGRHTLA 364
           + G  H+LA
Sbjct: 734 SAGTSHSLA 742



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 144/287 (50%), Gaps = 39/287 (13%)

Query: 1   MASTTS--IIAWGSGEDGQLGIGNNEEREWVCVVK-ALEPYKVRSVVAGSRNSLAICDDG 57
           +A TT   + +WG G+ G+LG GN+  +++  +++  L+   V  V AG R+S A+ +DG
Sbjct: 481 LAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDG 540

Query: 58  KTKT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRA-YAWGG 100
           +  T                 NIP+ V  +SN  + + + G  H +A+   GR  +++GG
Sbjct: 541 ELYTWGEGDFGRLGHGDSNSRNIPTLVKDISN--VGEVSCGSSHTIALSKDGRTVWSFGG 598

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
            + G+ G       DT R+ +  +V        + +R+V AG   S+ LT  G V+ WG 
Sbjct: 599 GDNGKLGH-----GDTNRVYKPKVV---EALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 650

Query: 161 PWPPGDIKQISVPVRVQGLEQVKL-----IAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
               G     +  +R + +E++       I++G  H LAL  D  ++AWGNN  GQ G G
Sbjct: 651 GACLGCGSSEATALRPKLIEELATTRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQG 710

Query: 216 D-TQPRSQPIPVQGLSGLTLVDIAAGGWHS---TALTDDGEVYGWGR 258
           + T P ++P  V GL G+ +  I+AG  HS   TAL  D +V  W R
Sbjct: 711 NSTGPITKPKKVVGLDGVAIQQISAGTSHSLAWTALPRDRQVVAWHR 757


>gi|356506490|ref|XP_003522014.1| PREDICTED: uncharacterized protein LOC100798841 [Glycine max]
          Length = 1162

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 22/232 (9%)

Query: 121 RRDIVIPQRCAPKLI-VRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVR 175
           + D++IP+     ++ V  +A G  H  + TR+GHV+TWGQ        G  K  S PV 
Sbjct: 183 KTDVLIPKALESNVLDVCHIATGAHHIAIATRQGHVFTWGQESGGRLGHGIDKDFSSPVL 242

Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGALWAWGN--NEYGQLGTGDTQPRSQPIPVQG-LS 230
           V+ LE    + +A G +H  AL +   L+ WG+  +  G LG G       P  V G L 
Sbjct: 243 VEFLEGNNFEFVACGEYHTSALSKSFELYTWGDGTHNVGLLGHGSEASHWIPKMVNGPLE 302

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
           GL +V IA G WHS   T +G+++ +G G  G LG GD +  S   P++V LL G   ++
Sbjct: 303 GLQVVSIACGTWHSALATSNGKLFTFGDGAFGVLGHGDQE--SVWYPKEVQLLTGLKTIK 360

Query: 291 VSCGGTHSVALTRDGH----------IFSFGRGDHGRLGYGRKVTTGQPMEV 332
           V+CG  H+ A+               +F++G GD  RLG+G K T  QP  V
Sbjct: 361 VACGVWHTAAIIEVAFQSGSNSSSWKLFTWGDGDMHRLGHGNKETYLQPTRV 412



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 151/340 (44%), Gaps = 61/340 (17%)

Query: 64  IPSQVNAL------SNT-KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           IPS+ + L      SN   +   A G  H      QG  + WG    G+ G   + KD +
Sbjct: 180 IPSKTDVLIPKALESNVLDVCHIATGAHHIAIATRQGHVFTWGQESGGRLGHGID-KDFS 238

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG---------------QP 161
             +L   +              VA G  H+  L++   ++TWG                 
Sbjct: 239 SPVLVEFLEGNN-------FEFVACGEYHTSALSKSFELYTWGDGTHNVGLLGHGSEASH 291

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           W P   K ++ P+  +GL QV  IA G +H+     +G L+ +G+  +G LG GD +   
Sbjct: 292 WIP---KMVNGPL--EGL-QVVSIACGTWHSALATSNGKLFTFGDGAFGVLGHGDQESVW 345

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDG----------EVYGWGRGEHGRLGFGDNDK 271
            P  VQ L+GL  + +A G WH+ A+ +            +++ WG G+  RLG G+  K
Sbjct: 346 YPKEVQLLTGLKTIKVACGVWHTAAIIEVAFQSGSNSSSWKLFTWGDGDMHRLGHGN--K 403

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            + + P +V  L   +  QV CG   ++ALT  GH+F+ G  +HG+L        G PM 
Sbjct: 404 ETYLQPTRVAPLMEYNFHQVECGHNMTIALTTSGHVFTMGGTEHGQL--------GNPMS 455

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
           +      P    D +   ++ K ++CG  H +AI+  ++E
Sbjct: 456 LG---KIPTLVQDKLLGEFVEK-ISCGAHH-VAILTNKSE 490



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 31/277 (11%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQCGEEPERKDDTGRILRR 122
           P  V  L        A G +H  A+      Y WG   +  G  G   E      +++  
Sbjct: 240 PVLVEFLEGNNFEFVACGEYHTSALSKSFELYTWGDGTHNVGLLGHGSEASHWIPKMVNG 299

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ- 177
            +         L V  +A G  HS + T  G ++T+G         GD + +  P  VQ 
Sbjct: 300 PL-------EGLQVVSIACGTWHSALATSNGKLFTFGDGAFGVLGHGDQESVWYPKEVQL 352

Query: 178 --GLEQVKLIAVGAFHNLALQEDG----------ALWAWGNNEYGQLGTGDTQPRSQPIP 225
             GL+ +K +A G +H  A+ E             L+ WG+ +  +LG G+ +   QP  
Sbjct: 353 LTGLKTIK-VACGVWHTAAIIEVAFQSGSNSSSWKLFTWGDGDMHRLGHGNKETYLQPTR 411

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NLLA 284
           V  L       +  G   + ALT  G V+  G  EHG+LG   N  S   +P  V + L 
Sbjct: 412 VAPLMEYNFHQVECGHNMTIALTTSGHVFTMGGTEHGQLG---NPMSLGKIPTLVQDKLL 468

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           GE + ++SCG  H   LT    I+++G G +GRLG+G
Sbjct: 469 GEFVEKISCGAHHVAILTNKSEIYTWGMGANGRLGHG 505



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 128/335 (38%), Gaps = 55/335 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---------- 56
           +  WG    G+LG G +++     +V+ LE      V  G  ++ A+             
Sbjct: 218 VFTWGQESGGRLGHGIDKDFSSPVLVEFLEGNNFEFVACGEYHTSALSKSFELYTWGDGT 277

Query: 57  --------GKTKTENIPSQVN-ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                   G   +  IP  VN  L   ++V  A G WH       G+ + +G   +G  G
Sbjct: 278 HNVGLLGHGSEASHWIPKMVNGPLEGLQVVSIACGTWHSALATSNGKLFTFGDGAFGVLG 337

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH----------VWT 157
                 D       +++    +    L   +VA G  H+  +               ++T
Sbjct: 338 ----HGDQESVWYPKEV----QLLTGLKTIKVACGVWHTAAIIEVAFQSGSNSSSWKLFT 389

Query: 158 WGQPWPPGDIKQIS--------VPVRVQGLEQVKLIAVGAFHNL--ALQEDGALWAWGNN 207
           WG     GD+ ++          P RV  L +     V   HN+  AL   G ++  G  
Sbjct: 390 WGD----GDMHRLGHGNKETYLQPTRVAPLMEYNFHQVECGHNMTIALTTSGHVFTMGGT 445

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           E+GQLG   +  +   +    L G  +  I+ G  H   LT+  E+Y WG G +GRLG G
Sbjct: 446 EHGQLGNPMSLGKIPTLVQDKLLGEFVEKISCGAHHVAILTNKSEIYTWGMGANGRLGHG 505

Query: 268 D-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
           D  D+ S   P  V  L   +I  VSCG   +  +
Sbjct: 506 DVEDRKS---PTLVVALKDRNIKNVSCGSNFTSCI 537



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKV--NLLAGEDIVQVSCGGTHSVALTRDGHIF 308
           GEV   G    G +G     K+  ++P+ +  N+L   D+  ++ G  H    TR GH+F
Sbjct: 164 GEVLANGVSPDG-IGTQIPSKTDVLIPKALESNVL---DVCHIATGAHHIAIATRQGHVF 219

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           ++G+   GRLG+G       P+ V          G+  +       VACG  HT A+
Sbjct: 220 TWGQESGGRLGHGIDKDFSSPVLVEF------LEGNNFE------FVACGEYHTSAL 264



 Score = 37.7 bits (86), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + + + I  WG G +G+LG G+ E+R+   +V AL+   +++V  GS  +  IC
Sbjct: 485 LTNKSEIYTWGMGANGRLGHGDVEDRKSPTLVVALKDRNIKNVSCGSNFTSCIC 538


>gi|340370446|ref|XP_003383757.1| PREDICTED: RCC1 and BTB domain-containing protein 1-like
           [Amphimedon queenslandica]
          Length = 529

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 104/183 (56%), Gaps = 13/183 (7%)

Query: 159 GQPWPPGDIKQISVPVRVQGLE--QVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLGTG 215
           G P  PG       P R++ L+   +  IA G+  H LAL EDG ++AWG N YGQLG G
Sbjct: 56  GTPITPG-----FTPKRIESLKGLNISSIAYGSDPHVLALTEDGTIYAWGANGYGQLGRG 110

Query: 216 DTQPRSQ-PIPV-QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
            T   S  P PV   L G+ +  +A GG+HS AL++ G+VY WG    G+LG GD   +S
Sbjct: 111 STSVHSNLPKPVNHALGGVIVSKVACGGFHSLALSNKGDVYSWGFNNCGQLGCGDT--TS 168

Query: 274 KMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +  P +V  LL G+  + V+C  T S ALT +G I S+G+   G+LG G  +   QP+ V
Sbjct: 169 RYNPNRVTGLLDGKTCIHVTCNHTSSFALTGEGEILSWGQNGSGQLGIGSTLQQLQPVNV 228

Query: 333 PIN 335
            IN
Sbjct: 229 QIN 231



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 100/212 (47%), Gaps = 21/212 (9%)

Query: 65  PSQVNALSNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P ++ +L    I   A G   H LA+ + G  YAWG N YGQ G                
Sbjct: 65  PKRIESLKGLNISSIAYGSDPHVLALTEDGTIYAWGANGYGQLGRGSTSVHSN------- 117

Query: 124 IVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
             +P+     L   IV +VA GG HS+ L+ +G V++WG         GD      P RV
Sbjct: 118 --LPKPVNHALGGVIVSKVACGGFHSLALSNKGDVYSWGFNNCGQLGCGDTTSRYNPNRV 175

Query: 177 QGLEQVK-LIAVGAFH--NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
            GL   K  I V   H  + AL  +G + +WG N  GQLG G T  + QP+ VQ ++   
Sbjct: 176 TGLLDGKTCIHVTCNHTSSFALTGEGEILSWGQNGSGQLGIGSTLQQLQPVNVQ-INDAF 234

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
           +  I  G  H+ AL++ G +Y WG   HG+LG
Sbjct: 235 IDQIVTGYSHALALSECGSIYAWGANTHGQLG 266



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 100/207 (48%), Gaps = 15/207 (7%)

Query: 134 LIVRQVAAGGT-HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ---------GLEQVK 183
           L +  +A G   H + LT +G ++ WG     G + + S  V            G   V 
Sbjct: 74  LNISSIAYGSDPHVLALTEDGTIYAWGAN-GYGQLGRGSTSVHSNLPKPVNHALGGVIVS 132

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGW 242
            +A G FH+LAL   G +++WG N  GQLG GDT  R  P  V G L G T + +     
Sbjct: 133 KVACGGFHSLALSNKGDVYSWGFNNCGQLGCGDTTSRYNPNRVTGLLDGKTCIHVTCNHT 192

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            S ALT +GE+  WG+   G+LG G   +  + V  ++N      I Q+  G +H++AL+
Sbjct: 193 SSFALTGEGEILSWGQNGSGQLGIGSTLQQLQPVNVQIN---DAFIDQIVTGYSHALALS 249

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQP 329
             G I+++G   HG+LG   K     P
Sbjct: 250 ECGSIYAWGANTHGQLGNASKQCVSSP 276



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 111/259 (42%), Gaps = 42/259 (16%)

Query: 32  VKALEPYKVRSVVAGSR-NSLAICDDGKTKT-----------------ENIPSQVN-ALS 72
           +++L+   + S+  GS  + LA+ +DG                      N+P  VN AL 
Sbjct: 68  IESLKGLNISSIAYGSDPHVLALTEDGTIYAWGANGYGQLGRGSTSVHSNLPKPVNHALG 127

Query: 73  NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ--CGEEPERKDDTGRILRRDIVIPQRC 130
              + + A GG+H LA+ ++G  Y+WG N  GQ  CG+   R +            P R 
Sbjct: 128 GVIVSKVACGGFHSLALSNKGDVYSWGFNNCGQLGCGDTTSRYN------------PNRV 175

Query: 131 APKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ-V 182
              L       V    T S  LT EG + +WGQ        G   Q   PV VQ  +  +
Sbjct: 176 TGLLDGKTCIHVTCNHTSSFALTGEGEILSWGQNGSGQLGIGSTLQQLQPVNVQINDAFI 235

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
             I  G  H LAL E G+++AWG N +GQLG    Q  S P  +  +   + V  A    
Sbjct: 236 DQIVTGYSHALALSECGSIYAWGANTHGQLGNASKQCVSSPTIINNIGRASEVA-AIHLS 294

Query: 243 HSTALTDDGEVYGWGRGEH 261
           H +A T  G+VY WG   H
Sbjct: 295 HISAATISGKVYIWGECCH 313



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 4/143 (2%)

Query: 193 LALQEDGALWAWGNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAGG-WHSTALTDD 250
           + + +   L+A G N    LG G    P   P  ++ L GL +  IA G   H  ALT+D
Sbjct: 34  ILVTQSNELYAIGTNGNCCLGLGTPITPGFTPKRIESLKGLNISSIAYGSDPHVLALTED 93

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           G +Y WG   +G+LG G     S + P+ VN  L G  + +V+CGG HS+AL+  G ++S
Sbjct: 94  GTIYAWGANGYGQLGRGSTSVHSNL-PKPVNHALGGVIVSKVACGGFHSLALSNKGDVYS 152

Query: 310 FGRGDHGRLGYGRKVTTGQPMEV 332
           +G  + G+LG G   +   P  V
Sbjct: 153 WGFNNCGQLGCGDTTSRYNPNRV 175



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT-HSV 299
           G  +  +T   E+Y  G   +  LG G    +    P+++  L G +I  ++ G   H +
Sbjct: 30  GNEAILVTQSNELYAIGTNGNCCLGLG-TPITPGFTPKRIESLKGLNISSIAYGSDPHVL 88

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           ALT DG I+++G   +G+LG G          V  N+P P N   G     I   VACGG
Sbjct: 89  ALTEDGTIYAWGANGYGQLGRGST-------SVHSNLPKPVNHALG---GVIVSKVACGG 138

Query: 360 RHTLAI 365
            H+LA+
Sbjct: 139 FHSLAL 144


>gi|410910330|ref|XP_003968643.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Takifugu
           rubripes]
          Length = 527

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 34/246 (13%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGL-----------EQ 181
           K IV      G H  + T +G V++WG         Q+       GL           ++
Sbjct: 74  KKIVSLSYGTGPHVAIATADGEVFSWGH----NGYSQLGNGTSTHGLTPALVSTNLLGKR 129

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---TLVDIA 238
           V  +A G+ H +AL  DG ++AWG N  GQ+G+G T   +QP P +  S L    +V+IA
Sbjct: 130 VIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTA--NQPTPRRVSSCLQNKVVVNIA 187

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            G   S A+ D GE+YGWG   +G+LG G+N   ++  P ++  L G +++QV+CG  H+
Sbjct: 188 CGQLCSMAVLDSGEIYGWGYNCNGQLGLGNN--GNQQTPCRIAALQGVNVIQVACGYAHT 245

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
           +ALT +G ++S+G   +G+LG G K     P  +              ++  ++++ AC 
Sbjct: 246 IALTDEGFVYSWGANSYGQLGTGNKCNQAVPTLI------------NTEKERMSEVAACH 293

Query: 359 GRHTLA 364
             HT A
Sbjct: 294 TSHTSA 299



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 18/257 (7%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ L   KIV  + G G H       G  ++WG N Y Q G        T  ++  +
Sbjct: 65  PRRIDVLCGKKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGNGTSTHGLTPALVSTN 124

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL 179
           ++  +       V +VA G  H++ LT +G V+ WG         G       P RV   
Sbjct: 125 LLGKR-------VIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTANQPTPRRVSSC 177

Query: 180 EQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q K+   IA G   ++A+ + G ++ WG N  GQLG G+   +  P  +  L G+ ++ 
Sbjct: 178 LQNKVVVNIACGQLCSMAVLDSGEIYGWGYNCNGQLGLGNNGNQQTPCRIAALQGVNVIQ 237

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +A G  H+ ALTD+G VY WG   +G+LG G  +K ++ VP  +N          +C  +
Sbjct: 238 VACGYAHTIALTDEGFVYSWGANSYGQLGTG--NKCNQAVPTLINTEKERMSEVAACHTS 295

Query: 297 H-SVALTRDGHIFSFGR 312
           H S A T+ G +  +G+
Sbjct: 296 HTSAAKTQSGQVLMWGQ 312



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   +  +  P  ++ + Q  +    A   L +  +  ++A G N  G LG GD Q   
Sbjct: 7   WP---VFALLPPEELKLIRQACVFGSAANEALYVTVNDEVFALGTNCSGCLGLGDLQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  L G  +V ++ G G H    T DGEV+ WG   + +LG G +           
Sbjct: 64  EPRRIDVLCGKKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGNGTSTHGLTPALVST 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL G+ +++V+CG  H++ALT DG +F++G  + G++G G             N P PR
Sbjct: 124 NLL-GKRVIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +  + +   +ACG   ++A+++
Sbjct: 173 RVSSCLQNKVVVN-IACGQLCSMAVLD 198



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 26/245 (10%)

Query: 135 IVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
           ++RQ    G+    ++ +T    V+  G         GD++    P R+  L   K++++
Sbjct: 20  LIRQACVFGSAANEALYVTVNDEVFALGTNCSGCLGLGDLQSTIEPRRIDVLCGKKIVSL 79

Query: 188 G---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-GLSGLTLVDIAAGGWH 243
                 H      DG +++WG+N Y QLG G +     P  V   L G  ++++A G  H
Sbjct: 80  SYGTGPHVAIATADGEVFSWGHNGYSQLGNGTSTHGLTPALVSTNLLGKRVIEVACGSHH 139

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALT 302
           + ALT DGEV+ WG    G++G G    +++  P++V+  L  + +V ++CG   S+A+ 
Sbjct: 140 TIALTTDGEVFAWGYNNSGQVGSGST--ANQPTPRRVSSCLQNKVVVNIACGQLCSMAVL 197

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
             G I+ +G   +G+LG G       P  +         A  GV+       VACG  HT
Sbjct: 198 DSGEIYGWGYNCNGQLGLGNNGNQQTPCRIA--------ALQGVN----VIQVACGYAHT 245

Query: 363 LAIVE 367
           +A+ +
Sbjct: 246 IALTD 250



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 73/179 (40%), Gaps = 40/179 (22%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D G+       
Sbjct: 149 VFAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKVVVNIACGQLCSMAVLDSGEIYGWGYN 208

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL    ++Q A G  H +A+ D+G  Y+WG N YGQ G  
Sbjct: 209 CNGQLGLGNNGNQQTPCRIAALQGVNVIQVACGYAHTIALTDEGFVYSWGANSYGQLG-- 266

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI------VRQVAAGGTH--SVVLTREGHVWTWGQ 160
                 TG    + +       P LI      + +VAA  T   S   T+ G V  WGQ
Sbjct: 267 ------TGNKCNQAV-------PTLINTEKERMSEVAACHTSHTSAAKTQSGQVLMWGQ 312


>gi|307107146|gb|EFN55390.1| hypothetical protein CHLNCDRAFT_57991 [Chlorella variabilis]
          Length = 596

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 150/307 (48%), Gaps = 42/307 (13%)

Query: 96  YAWGGNEYGQCG-EEPERKDDTGRI--LRRDIVIP--QRCAPKLIVRQVAAGGTHSVVLT 150
           YA G   +GQ G E+ + ++   R+  + RD+ +P  Q     + +  V+AG +HS  ++
Sbjct: 178 YAMGRGFHGQLGLEQFDNQEQPQRVGAVERDVKVPLYQGAPDDIHLAVVSAGSSHSASIS 237

Query: 151 REGHVWTWGQP---------WPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDG 199
           R G ++TWG           W P    ++S P  +  L++ ++++V  GA H LA+ E G
Sbjct: 238 RRGELYTWGLASSGELGHGGWTP---IEVSCPRMITSLQRTRIVSVSCGANHTLAISETG 294

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            LW+ G   +GQLG G        + V  +    +V +AAG  HS AL  DG+++ WG  
Sbjct: 295 QLWSCGRGRHGQLGHGHFHDEGLLMLVDTIRHERVVSVAAGRAHSVALAADGKIFTWGDA 354

Query: 260 EHGRLGF--------GDNDKSSKM-VPQKVN------LLAGEDIVQVSCGGTHSVALTRD 304
             G+LG         G N +   +  PQ +       L     +  ++ GG HS+A+T  
Sbjct: 355 SKGQLGHAQLAAVMQGPNPQPLSIPFPQAIQSLEPARLKPPARVTAIAAGGDHSMAVTVA 414

Query: 305 GHIFSFGRGDHG--RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
           G + +FG   HG  RLG G  +    P EVP+ +    + G  + R   A  V CG +HT
Sbjct: 415 GALLAFGSNKHGQARLGTGDTLDRMIPTEVPLAL---ESEGGQLVR---AMQVHCGAQHT 468

Query: 363 LAIVEWQ 369
           LA+V+ Q
Sbjct: 469 LALVQVQ 475



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 172/386 (44%), Gaps = 77/386 (19%)

Query: 2   ASTTSIIAWGSGEDGQLGI---GNNEEREWVCVVK----------ALEPYKVRSVVAGSR 48
           A   ++ A G G  GQLG+    N E+ + V  V+          A +   +  V AGS 
Sbjct: 172 APEYAMYAMGRGFHGQLGLEQFDNQEQPQRVGAVERDVKVPLYQGAPDDIHLAVVSAGSS 231

Query: 49  NSLAICDDGKTKT------------------ENIPSQVNALSNTKIVQAAIGGWHCLAVD 90
           +S +I   G+  T                   + P  + +L  T+IV  + G  H LA+ 
Sbjct: 232 HSASISRRGELYTWGLASSGELGHGGWTPIEVSCPRMITSLQRTRIVSVSCGANHTLAIS 291

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
           + G+ ++ G   +GQ G       D G ++  D +  +R      V  VAAG  HSV L 
Sbjct: 292 ETGQLWSCGRGRHGQLGHG--HFHDEGLLMLVDTIRHER------VVSVAAGRAHSVALA 343

Query: 151 REGHVWTWG-------------------QPWP-----PGDIKQISVPVRVQGLEQVKLIA 186
            +G ++TWG                    P P     P  I+ +  P R++   +V  IA
Sbjct: 344 ADGKIFTWGDASKGQLGHAQLAAVMQGPNPQPLSIPFPQAIQSLE-PARLKPPARVTAIA 402

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQ--LGTGDTQPRSQPIPV------QGLSGLTLVDIA 238
            G  H++A+   GAL A+G+N++GQ  LGTGDT  R  P  V      +G   +  + + 
Sbjct: 403 AGGDHSMAVTVAGALLAFGSNKHGQARLGTGDTLDRMIPTEVPLALESEGGQLVRAMQVH 462

Query: 239 AGGWHSTALTD---DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            G  H+ AL       +V   G   +G LG GD  +  +  P  +  L G+ IV VS G 
Sbjct: 463 CGAQHTLALVQVQGHHQVRSVGGNSYGELGLGDRLERHRFHP--IPALKGKSIVCVSVGD 520

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYG 321
            H+ A+ +DG ++ +GRGD G+LG G
Sbjct: 521 WHNAAICQDGRLYVWGRGDCGQLGLG 546



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 44/307 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVC--VVKALEPYKVRSVVAGSRNSLAICDDGKT----- 59
           +  WG    G+LG G     E  C  ++ +L+  ++ SV  G+ ++LAI + G+      
Sbjct: 242 LYTWGLASSGELGHGGWTPIEVSCPRMITSLQRTRIVSVSCGANHTLAISETGQLWSCGR 301

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        E +   V+ + + ++V  A G  H +A+   G+ + WG    GQ G 
Sbjct: 302 GRHGQLGHGHFHDEGLLMLVDTIRHERVVSVAAGRAHSVALAADGKIFTWGDASKGQLGH 361

Query: 109 EPERKDDTGRILR-RDIVIPQ--------RCAPKLIVRQVAAGGTHSVVLTREGHVWTWG 159
                   G   +   I  PQ        R  P   V  +AAGG HS+ +T  G +  +G
Sbjct: 362 AQLAAVMQGPNPQPLSIPFPQAIQSLEPARLKPPARVTAIAAGGDHSMAVTVAGALLAFG 421

Query: 160 QP------WPPGDIKQISVPVRV------QGLEQVKLIAV--GAFHNLAL---QEDGALW 202
                      GD     +P  V      +G + V+ + V  GA H LAL   Q    + 
Sbjct: 422 SNKHGQARLGTGDTLDRMIPTEVPLALESEGGQLVRAMQVHCGAQHTLALVQVQGHHQVR 481

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           + G N YG+LG GD   R +  P+  L G ++V ++ G WH+ A+  DG +Y WGRG+ G
Sbjct: 482 SVGGNSYGELGLGDRLERHRFHPIPALKGKSIVCVSVGDWHNAAICQDGRLYVWGRGDCG 541

Query: 263 RLGFGDN 269
           +LG GD+
Sbjct: 542 QLGLGDD 548



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)

Query: 185 IAVGAFHNLAL-------QEDGALWAWGNNEYGQLGTGDTQPRSQP-----------IPV 226
           IA+G +H + L         + A++A G   +GQLG      + QP           +P+
Sbjct: 154 IALGTYHTVGLLCQPEQAAPEYAMYAMGRGFHGQLGLEQFDNQEQPQRVGAVERDVKVPL 213

Query: 227 -QGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            QG    + L  ++AG  HS +++  GE+Y WG    G LG G         P+ +  L 
Sbjct: 214 YQGAPDDIHLAVVSAGSSHSASISRRGELYTWGLASSGELGHGGWTPIEVSCPRMITSLQ 273

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
              IV VSCG  H++A++  G ++S GRG HG+LG+G
Sbjct: 274 RTRIVSVSCGANHTLAISETGQLWSCGRGRHGQLGHG 310



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 61/285 (21%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           ++ T  + + G G  GQLG G+  +   + +V  +   +V SV AG  +S+A+  DGK  
Sbjct: 290 ISETGQLWSCGRGRHGQLGHGHFHDEGLLMLVDTIRHERVVSVAAGRAHSVALAADGKIF 349

Query: 61  T---------------------------ENIPSQVNALSNTK------IVQAAIGGWHCL 87
           T                              P  + +L   +      +   A GG H +
Sbjct: 350 TWGDASKGQLGHAQLAAVMQGPNPQPLSIPFPQAIQSLEPARLKPPARVTAIAAGGDHSM 409

Query: 88  AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL------IVR--QV 139
           AV   G   A+G N++GQ       +  TG  L  D +IP      L      +VR  QV
Sbjct: 410 AVTVAGALLAFGSNKHGQA------RLGTGDTL--DRMIPTEVPLALESEGGQLVRAMQV 461

Query: 140 AAGGTHSVVLTR-EGHVW-------TWGQPWPPGDIKQISV-PVRVQGLEQVKLIAVGAF 190
             G  H++ L + +GH         ++G+      +++    P+     + +  ++VG +
Sbjct: 462 HCGAQHTLALVQVQGHHQVRSVGGNSYGELGLGDRLERHRFHPIPALKGKSIVCVSVGDW 521

Query: 191 HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           HN A+ +DG L+ WG  + GQLG GD + R  P   + L G T++
Sbjct: 522 HNAAICQDGRLYVWGRGDCGQLGLGDDRNRWAP---KQLGGFTII 563


>gi|114598774|ref|XP_001175007.1| PREDICTED: E3 ISG15--protein ligase HERC5-like, partial [Pan
           troglodytes]
          Length = 207

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 8/198 (4%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  G  H ++L+ +G  + +        +K +     +Q  +++  I  G +H+LAL
Sbjct: 3   IHSVDQGAEHMLILSSDGKPFEYDNY----SMKHLRFESILQE-KKIIQITCGDYHSLAL 57

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
            + G L+AWG N +GQLG G   P +  P  V+ L+G+ L  I+AG  HS AL+  G +Y
Sbjct: 58  SKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIY 117

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG+ E G+LG G  +  SK  P  +  L  + +  V+CGG+HS  LT+DG +F+FG G 
Sbjct: 118 SWGKNEFGQLGLGHTE--SKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGK 175

Query: 315 HGRLGYGRKVTTGQPMEV 332
           HG+LG+       +P  V
Sbjct: 176 HGQLGHNSTQNELRPCLV 193



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 14/195 (7%)

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG- 165
           G+  E  + + + LR + ++ ++   K+I  Q+  G  HS+ L++ G ++ WGQ      
Sbjct: 20  GKPFEYDNYSMKHLRFESILQEK---KII--QITCGDYHSLALSKGGELFAWGQNLHGQL 74

Query: 166 ----DIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
                    + P  V+ L  V L  I+ G  H++AL   G +++WG NE+GQLG G T+ 
Sbjct: 75  GVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNEFGQLGLGHTES 134

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           +  P  ++GL    +  +A GG HS  LT DG ++ +G G+HG+L  G N   +++ P  
Sbjct: 135 KDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQL--GHNSTQNELRPCL 192

Query: 280 VNLLAGEDIVQVSCG 294
           V  L    + Q++CG
Sbjct: 193 VAELVEYRVTQIACG 207



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 32/220 (14%)

Query: 39  KVRSVVAGSRNSLAICDDGKTKTENIPSQVNA-----LSNTKIVQAAIGGWHCLAVDDQG 93
           K+ SV  G+ + L +  DGK    +  S  +      L   KI+Q   G +H LA+   G
Sbjct: 2   KIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKIIQITCGDYHSLALSKGG 61

Query: 94  RAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHS 146
             +AWG N +GQ G         GR        P    P+++       + Q++AG  HS
Sbjct: 62  ELFAWGQNLHGQLG--------VGR------KFPSTTTPQIVEHLAGVPLAQISAGEAHS 107

Query: 147 VVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           + L+  G++++WG+        G  +    P  ++GL  ++V+ +A G  H+  L +DG 
Sbjct: 108 MALSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGL 167

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           L+ +G  ++GQLG   TQ   +P  V  L    +  IA G
Sbjct: 168 LFTFGAGKHGQLGHNSTQNELRPCLVAELVEYRVTQIACG 207



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 24/180 (13%)

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           GA H L L  DG  + + N     L       R + I    L    ++ I  G +HS AL
Sbjct: 9   GAEHMLILSSDGKPFEYDNYSMKHL-------RFESI----LQEKKIIQITCGDYHSLAL 57

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           +  GE++ WG+  HG+LG G    S+   PQ V  LAG  + Q+S G  HS+AL+  G+I
Sbjct: 58  SKGGELFAWGQNLHGQLGVGRKFPSTT-TPQIVEHLAGVPLAQISAGEAHSMALSMSGNI 116

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +S+G+ + G+LG G   +   P  +           +G+D + + + VACGG H+  + +
Sbjct: 117 YSWGKNEFGQLGLGHTESKDYPSLI-----------EGLDNQKV-EFVACGGSHSALLTQ 164



 Score = 44.3 bits (103), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           + AWG    GQLG+G          +V+ L    +  + AG  +S+A+   G        
Sbjct: 63  LFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKN 122

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T++++ PS +  L N K+   A GG H   +   G  + +G  ++GQ G  
Sbjct: 123 EFGQLGLGHTESKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHN 182

Query: 110 PERKD 114
             + +
Sbjct: 183 STQNE 187



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + +I +WG  E GQLG+G+ E +++  +++ L+  KV  V  G  +S  +  DG   
Sbjct: 110 LSMSGNIYSWGKNEFGQLGLGHTESKDYPSLIEGLDNQKVEFVACGGSHSALLTQDGLLF 169

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIG 82
                         T+ E  P  V  L   ++ Q A G
Sbjct: 170 TFGAGKHGQLGHNSTQNELRPCLVAELVEYRVTQIACG 207


>gi|301117544|ref|XP_002906500.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
 gi|262107849|gb|EEY65901.1| regulator of chromosome condensation (RCC1)-like protein
           [Phytophthora infestans T30-4]
          Length = 4048

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 140/301 (46%), Gaps = 31/301 (10%)

Query: 64  IPSQVNALSNTKI--VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRIL 120
           I + V ALS   I  V AA G  H LAV   G  ++WG N+ GQ G      K  T R++
Sbjct: 540 IATPVRALSGIAISMVAAANGCEHMLAVASDGAVFSWGYNDRGQLGLGSTISKSHTPRMI 599

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-------- 172
                       K  +   A    HS V++  G + T+G      D  Q+ +        
Sbjct: 600 -------DSLREKYHITTAAVSYHHSAVVSSNGELLTFGM----NDCGQLGLDHTQHQHT 648

Query: 173 PVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ--- 227
           P  V  L    V   A G +H +A   DG ++++G N+YGQLG G  +    P  V+   
Sbjct: 649 PQVVDALSSQVVTKAACGLYHTVAATSDGEVYSFGKNDYGQLGLGHARNIKTPALVKTSL 708

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           G S   +V ++ G +H+  +++ G++  WGR ++G+LG G   K  K   Q V L     
Sbjct: 709 GESDEKIVAVSCGYYHTVTISEKGKLITWGRNDYGQLGIGS--KEHKNSAQFVPLPMSSK 766

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
           I   SCG  HS+ L  +G +  FGR + G+LG G +  +    ++P+ +P+   A D V 
Sbjct: 767 IKNASCGCYHSLILMSNGRVMVFGRNNKGQLGAGARTLSSA--DLPLPVPSNSLANDEVV 824

Query: 348 R 348
           R
Sbjct: 825 R 825



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 40/325 (12%)

Query: 56  DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAV-DDQGRAYAWGGNEYGQCGEEPERKD 114
           +  +K E++P       + K ++   GG   LAV  + G  +  G N+ GQCG       
Sbjct: 483 NSTSKLEHVP-----FFSAKGIRDVAGGNEVLAVVMNDGGVFTCGLNKSGQCG------- 530

Query: 115 DTGRILRRDIV-IPQRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWG-----QPWPPGD 166
             G    R I+  P R    + +  VAA  G  H + +  +G V++WG     Q      
Sbjct: 531 -NGTFEERVIIATPVRALSGIAISMVAAANGCEHMLAVASDGAVFSWGYNDRGQLGLGST 589

Query: 167 IKQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           I +   P  +  L +   +   AV   H+  +  +G L  +G N+ GQLG   TQ +  P
Sbjct: 590 ISKSHTPRMIDSLREKYHITTAAVSYHHSAVVSSNGELLTFGMNDCGQLGLDHTQHQHTP 649

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD--NDKSSKMVPQKVN 281
             V  LS   +   A G +H+ A T DGEVY +G+ ++G+LG G   N K+  +V   + 
Sbjct: 650 QVVDALSSQVVTKAACGLYHTVAATSDGEVYSFGKNDYGQLGLGHARNIKTPALVKTSLG 709

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRN 341
             + E IV VSCG  H+V ++  G + ++GR D+G+LG G K        VP+ + +   
Sbjct: 710 -ESDEKIVAVSCGYYHTVTISEKGKLITWGRNDYGQLGIGSKEHKNSAQFVPLPMSSK-- 766

Query: 342 AGDGVDRRWIAKLVACGGRHTLAIV 366
                      K  +CG  H+L ++
Sbjct: 767 ----------IKNASCGCYHSLILM 781



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 45/282 (15%)

Query: 1   MASTTSIIAWGSGEDGQLGIGN-----------NEEREWVCVVKALEPYKVRSVVA--GS 47
           +AS  ++ +WG  + GQLG+G+           +  RE   +  A   Y   +VV+  G 
Sbjct: 567 VASDGAVFSWGYNDRGQLGLGSTISKSHTPRMIDSLREKYHITTAAVSYHHSAVVSSNGE 626

Query: 48  RNSLAICDDGK-----TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
             +  + D G+     T+ ++ P  V+ALS+  + +AA G +H +A    G  Y++G N+
Sbjct: 627 LLTFGMNDCGQLGLDHTQHQHTPQVVDALSSQVVTKAACGLYHTVAATSDGEVYSFGKND 686

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
           YGQ G    R   T  +++  +        K++   V+ G  H+V ++ +G + TWG+  
Sbjct: 687 YGQLGLGHARNIKTPALVKTSL---GESDEKIVA--VSCGYYHTVTISEKGKLITWGR-- 739

Query: 163 PPGDIKQI------------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYG 210
              D  Q+             VP+ +    ++K  + G +H+L L  +G +  +G N  G
Sbjct: 740 --NDYGQLGIGSKEHKNSAQFVPLPMSS--KIKNASCGCYHSLILMSNGRVMVFGRNNKG 795

Query: 211 QLGTGDTQPRSQ----PIPVQGLSGLTLVDIAAGGWHSTALT 248
           QLG G     S     P+P   L+   +V IAAG + S  LT
Sbjct: 796 QLGAGARTLSSADLPLPVPSNSLANDEVVRIAAGFYSSYILT 837



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           E+  L++ G N YG+L  G     S+   V   S   + D+A G      + +DG V+  
Sbjct: 462 EECELFSCGQNNYGELCLGHCNSTSKLEHVPFFSAKGIRDVAGGNEVLAVVMNDGGVFTC 521

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGHIFSFGRGD 314
           G  + G+ G G  ++   ++   V  L+G  I  V+   G  H +A+  DG +FS+G  D
Sbjct: 522 GLNKSGQCGNGTFEERV-IIATPVRALSGIAISMVAAANGCEHMLAVASDGAVFSWGYND 580

Query: 315 HGRLGYGRKVT 325
            G+LG G  ++
Sbjct: 581 RGQLGLGSTIS 591


>gi|332025816|gb|EGI65973.1| X-linked retinitis pigmentosa GTPase regulator [Acromyrmex
           echinatior]
          Length = 771

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 141/316 (44%), Gaps = 39/316 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR--ILRR 122
           PS V  L   ++   A G  H L      + +A G N+ GQ G E     D+    IL  
Sbjct: 125 PSCVKILKPERVTHVACGRAHTLICTGAQKIFACGSNQEGQLGRENSVIGDSSSSPILIY 184

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQ 177
           D  +     P++I  Q+AAG  HS+ LT +G V  WG     Q   P     +  P++V 
Sbjct: 185 DCGL---AGPRII--QLAAGSHHSMALTSDGGVVAWGSNLEGQLGLPEISGLVYKPMKVP 239

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG-----TGDTQPRSQPIPVQGLSGL 232
             E VK I+ G +H++ L E G ++  G +E G+LG     +    P+   +P   L   
Sbjct: 240 IPEPVKEISAGYYHSVFLTESGLIYICGESESGKLGLNINFSTQVAPKQMQLPAPAL--- 296

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN---DKSSKMVPQKVNLLAGEDIV 289
               +A GG H+  L ++G +Y  G    G+LG G N     + K++P+    L  E I+
Sbjct: 297 ---HVACGGHHTFILAENGNIYCSGSNASGQLGMGINVNETPTPKLLPRGA--LQDEKII 351

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRR 349
           ++ CG +HS  LT  G +F+ G G HG+LG          +   +             + 
Sbjct: 352 KIVCGESHSAILTESGKLFTCGDGRHGKLGLEENENNVHEVTFAVKY-----------QE 400

Query: 350 WIAKLVACGGRHTLAI 365
                VACGG HT+ +
Sbjct: 401 LFVSNVACGGCHTILV 416



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V +I  G  H+  + + G L+ +G+N++GQLG G     S+P  V+ L    +  +A G 
Sbjct: 84  VVIIECGDEHSAVVCQTGRLFIFGSNDWGQLGLGHRNHISKPSCVKILKPERVTHVACGR 143

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDN---DKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            H+   T   +++  G  + G+LG  ++   D SS  +      LAG  I+Q++ G  HS
Sbjct: 144 AHTLICTGAQKIFACGSNQEGQLGRENSVIGDSSSSPILIYDCGLAGPRIIQLAAGSHHS 203

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEVPINIP 337
           +ALT DG + ++G    G+LG         +PM+VPI  P
Sbjct: 204 MALTSDGGVVAWGSNLEGQLGLPEISGLVYKPMKVPIPEP 243


>gi|302807678|ref|XP_002985533.1| hypothetical protein SELMODRAFT_122484 [Selaginella moellendorffii]
 gi|300146739|gb|EFJ13407.1| hypothetical protein SELMODRAFT_122484 [Selaginella moellendorffii]
          Length = 228

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           +WG  E+GQ G +     D   +    +    R + +L+  +VA G +H++ LT  G V+
Sbjct: 3   SWGCGEFGQLGLK-----DAAGVFNSPLPRFLRGSRELLFVRVACGSSHTLALTGSGDVY 57

Query: 157 TWGQ----PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYG 210
           ++GQ        G  +  S PV V  L  + +  IA G  H+ AL  +G L++WG  +YG
Sbjct: 58  SFGQGTFGALGHGTTESCSSPVIVDSLWGLGIVQIACGDNHSCALTVEGQLFSWGRGKYG 117

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G  +   QP+PV  LS   L  +  G  ++ A+  DG+++ WG G  G+ G G  D
Sbjct: 118 QLGCGSVENHLQPVPVTALSDRLLTQVVCGADYTMAIDSDGQLFSWGHGHWGQTGHGTQD 177

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
               +VP+ V  L  ++IVQ S G  H+VALT  G ++++G  + G++
Sbjct: 178 N--ILVPKLVCSLENDNIVQASAGARHAVALTSGGGVYAWGDNEQGQV 223



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 2/139 (1%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +A G+ H LAL   G ++++G   +G LG G T+  S P+ V  L GL +V IA G  HS
Sbjct: 40  VACGSSHTLALTGSGDVYSFGQGTFGALGHGTTESCSSPVIVDSLWGLGIVQIACGDNHS 99

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            ALT +G+++ WGRG++G+LG G  +   + VP  V  L+   + QV CG  +++A+  D
Sbjct: 100 CALTVEGQLFSWGRGKYGQLGCGSVENHLQPVP--VTALSDRLLTQVVCGADYTMAIDSD 157

Query: 305 GHIFSFGRGDHGRLGYGRK 323
           G +FS+G G  G+ G+G +
Sbjct: 158 GQLFSWGHGHWGQTGHGTQ 176



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQ-PRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           L +WG  E+GQLG  D     + P+P  ++G   L  V +A G  H+ ALT  G+VY +G
Sbjct: 1   LVSWGCGEFGQLGLKDAAGVFNSPLPRFLRGSRELLFVRVACGSSHTLALTGSGDVYSFG 60

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +G  G LG G  +  S   P  V+ L G  IVQ++CG  HS ALT +G +FS+GRG +G+
Sbjct: 61  QGTFGALGHGTTESCSS--PVIVDSLWGLGIVQIACGDNHSCALTVEGQLFSWGRGKYGQ 118

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           LG G      QP  VP+   + R          +   V CG  +T+AI
Sbjct: 119 LGCGSVENHLQP--VPVTALSDR----------LLTQVVCGADYTMAI 154



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 43/236 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS--------VVAGSRNSLAICDDG- 57
           +++WG GE GQLG+     ++   V  +  P  +R         V  GS ++LA+   G 
Sbjct: 1   LVSWGCGEFGQLGL-----KDAAGVFNSPLPRFLRGSRELLFVRVACGSSHTLALTGSGD 55

Query: 58  ---------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           T++ + P  V++L    IVQ A G  H  A+  +G+ ++WG  +
Sbjct: 56  VYSFGQGTFGALGHGTTESCSSPVIVDSLWGLGIVQIACGDNHSCALTVEGQLFSWGRGK 115

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-P 161
           YGQ G         G +      +P       ++ QV  G  +++ +  +G +++WG   
Sbjct: 116 YGQLG--------CGSVENHLQPVPVTALSDRLLTQVVCGADYTMAIDSDGQLFSWGHGH 167

Query: 162 WPP---GDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           W     G    I VP  V  LE   ++  + GA H +AL   G ++AWG+NE GQ+
Sbjct: 168 WGQTGHGTQDNILVPKLVCSLENDNIVQASAGARHAVALTSGGGVYAWGDNEQGQV 223


>gi|431898775|gb|ELK07147.1| X-linked retinitis pigmentosa GTPase regulator [Pteropus alecto]
          Length = 1019

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 155/317 (48%), Gaps = 30/317 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T + P+ V AL   K+  AA G  H L + ++G+ YA GGN  GQ G         
Sbjct: 115 GSRSTVSKPTCVKALKPEKVKFAACGRNHTLVLTEEGKVYAAGGNNEGQLG--------L 166

Query: 117 GRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
           G    R+   P  C    +  ++Q++AG   S  LT +G+++ WG          ++  +
Sbjct: 167 GDTEDRNTFHP-ICFFTSQHQLKQLSAGSNTSAALTVDGNLFMWGDNSEGQIGLKNVPNV 225

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            VP +V   + +  I+ G +H+  +  +G L+ +G  E G+LG       +  +P Q + 
Sbjct: 226 CVPHQVTVGKPIAWISCGYYHSAFVTMEGELYTFGETECGKLGLPRQLLMNHKVP-QLVP 284

Query: 231 GL--TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           G+   ++ +A GG H+  LT+   VY +G G+ G+LG G     +   P+ +  +  + I
Sbjct: 285 GIPEKVIQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFIFET-AEPKILEPIKDQKI 342

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDR 348
           + +SCG  H+  +T  G +++FG G HG+LG G +  T Q +        P    + +  
Sbjct: 343 IYISCGENHTALITDVGLMYTFGDGRHGKLGLGMENFTNQFI--------PTLCSNFL-- 392

Query: 349 RWIAKLVACGGRHTLAI 365
           R++ +LVACGG H +  
Sbjct: 393 RFMVELVACGGCHMIVF 409



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 24/241 (9%)

Query: 135 IVRQVAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAV 187
           I   +A G  H+ ++T    ++      WGQ    G    +S P  V+ L  E+VK  A 
Sbjct: 81  IPTYLACGDEHTAIITGNNKLYMFGSNNWGQ-LGLGSRSTVSKPTCVKALKPEKVKFAAC 139

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTA 246
           G  H L L E+G ++A G N  GQLG GDT+ R+   P+    S   L  ++AG   S A
Sbjct: 140 GRNHTLVLTEEGKVYAAGGNNEGQLGLGDTEDRNTFHPICFFTSQHQLKQLSAGSNTSAA 199

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           LT DG ++ WG    G++G    +  +  VP +V +  G+ I  +SCG  HS  +T +G 
Sbjct: 200 LTVDGNLFMWGDNSEGQIGL--KNVPNVCVPHQVTV--GKPIAWISCGYYHSAFVTMEGE 255

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +++FG  + G+LG  R++      +VP  +P       G+  + I   VACGG HT+ + 
Sbjct: 256 LYTFGETECGKLGLPRQLLMNH--KVPQLVP-------GIPEKVIQ--VACGGGHTVVLT 304

Query: 367 E 367
           E
Sbjct: 305 E 305



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 153/332 (46%), Gaps = 42/332 (12%)

Query: 49  NSLAICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           +S A+   GKTK  ENIPS+     N      A G  H   +    + Y +G N +GQ G
Sbjct: 55  DSGAVFTFGKTKFAENIPSKF-WFKNDIPTYLACGDEHTAIITGNNKLYMFGSNNWGQLG 113

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----Q 160
                      +  R  V    C   L    V+  A G  H++VLT EG V+  G     
Sbjct: 114 -----------LGSRSTVSKPTCVKALKPEKVKFAACGRNHTLVLTEEGKVYAAGGNNEG 162

Query: 161 PWPPGDIKQISV--PV-RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
               GD +  +   P+       Q+K ++ G+  + AL  DG L+ WG+N  GQ+G  + 
Sbjct: 163 QLGLGDTEDRNTFHPICFFTSQHQLKQLSAGSNTSAALTVDGNLFMWGDNSEGQIGLKNV 222

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              +  +P Q   G  +  I+ G +HS  +T +GE+Y +G  E G+LG       +  VP
Sbjct: 223 P--NVCVPHQVTVGKPIAWISCGYYHSAFVTMEGELYTFGETECGKLGLPRQLLMNHKVP 280

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV-TTGQPMEV-PIN 335
           Q V  +  E ++QV+CGG H+V LT    +++FG G  G+LG G  +  T +P  + PI 
Sbjct: 281 QLVPGIP-EKVIQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFIFETAEPKILEPIK 338

Query: 336 IPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                      D++ I   ++CG  HT  I +
Sbjct: 339 -----------DQKII--YISCGENHTALITD 357



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 46/325 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L + ++GK        
Sbjct: 101 LYMFGSNNWGQLGLGSRSTVSKPTCVKALKPEKVKFAACGRNHTLVLTEEGKVYAAGGNN 160

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    +    S  ++ Q + G     A+   G  + WG N  GQ G  
Sbjct: 161 EGQLGLGDTEDRNTFHPICFFTSQHQLKQLSAGSNTSAALTVDGNLFMWGDNSEGQIG-- 218

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQP--- 161
                     L+    +P  C P  +     +  ++ G  HS  +T EG ++T+G+    
Sbjct: 219 ----------LKN---VPNVCVPHQVTVGKPIAWISCGYYHSAFVTMEGELYTFGETECG 265

Query: 162 ---WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD- 216
               P   +    VP  V G+ E+V  +A G  H + L E  A++ +G  ++GQLG G  
Sbjct: 266 KLGLPRQLLMNHKVPQLVPGIPEKVIQVACGGGHTVVLTE-KAVYTFGLGQFGQLGLGTF 324

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
               ++P  ++ +    ++ I+ G  H+  +TD G +Y +G G HG+LG G  + +++ +
Sbjct: 325 IFETAEPKILEPIKDQKIIYISCGENHTALITDVGLMYTFGDGRHGKLGLGMENFTNQFI 384

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVAL 301
           P   +      +  V+CGG H +  
Sbjct: 385 PTLCSNFLRFMVELVACGGCHMIVF 409


>gi|4506581|ref|NP_000319.1| X-linked retinitis pigmentosa GTPase regulator isoform A [Homo
           sapiens]
 gi|1314871|gb|AAC50481.1| retinitis pigmentosa GTPase regulator [Homo sapiens]
 gi|2204218|emb|CAA66258.1| XLRP3 [Homo sapiens]
 gi|119579845|gb|EAW59441.1| retinitis pigmentosa GTPase regulator, isoform CRA_a [Homo sapiens]
          Length = 815

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  +    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 136/286 (47%), Gaps = 44/286 (15%)

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D G  + +G +++ +        ++ G+   + D+ +   C           G  HS V+
Sbjct: 10  DSGAVFTFGKSKFAE--------NNPGKFWFKNDVPVHLSC-----------GDEHSAVV 50

Query: 150 TREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALW 202
           T    ++      WGQ    G    IS P  V+ L  E+VKL A G  H L   E G ++
Sbjct: 51  TGNNKLYMFGSNNWGQ-LGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVY 109

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+DG ++ WG    
Sbjct: 110 ATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSE 169

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G++G    + S+  VPQ+V +  G+ +  +SCG  HS  +T DG ++ FG  ++G+LG  
Sbjct: 170 GQIGL--KNVSNVCVPQQVTI--GKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGL- 224

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  P ++  N   P+   + +  + I   VACGG HT+ + E
Sbjct: 225 -------PNQLLGNHRTPQLVSE-IPEKVIQ--VACGGEHTVVLTE 260



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                     L+   ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P      
Sbjct: 174 ----------LKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
            P   +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G     
Sbjct: 224 LPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P  
Sbjct: 283 TSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTL 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            +      +  V+CGG H V  
Sbjct: 343 CSNFLRFIVKLVACGGCHMVVF 364



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAISK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 24/121 (19%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D G V+ +G+ +     F +N+      P K      +  V +SCG  HS  +T +  
Sbjct: 8   MPDSGAVFTFGKSK-----FAENN------PGKF-WFKNDVPVHLSCGDEHSAVVTGNNK 55

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++ FG  + G+LG G K    +P  V    P               KL ACG  HTL   
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEK------------VKLAACGRNHTLVST 103

Query: 367 E 367
           E
Sbjct: 104 E 104


>gi|147919953|ref|YP_686293.1| regulator of chromosome condensation [Methanocella arvoryzae MRE50]
 gi|110621689|emb|CAJ36967.1| predicted regulator of chromosome condensation [Methanocella
           arvoryzae MRE50]
          Length = 439

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 163/351 (46%), Gaps = 44/351 (12%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY------KVRSVVAGSRNSLAICDDG-- 57
           S+ AWG+  +GQLG G    R    ++K            + S+  G   ++ + +DG  
Sbjct: 50  SLWAWGNNNNGQLGDGTYINRLVPVLIKDYTDLLGGNLIGISSIDGGYGYTVILRNDGTV 109

Query: 58  -------------KTKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                        + + +N + +Q+  +SN   + A  G  H LA+   G  ++WG N +
Sbjct: 110 WTSGNNDAGQLGQRNRADNAVFTQIPNMSNVARIDAGEG--HVLALKVDGTVWSWGDNSF 167

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT-REGHVW---TWG 159
           GQ G     K  TG         P R      +R +AAGG HS+     E + W    +G
Sbjct: 168 GQLGNG--SKALTGE--------PARVMGVQGIRSIAAGGRHSIATYGMEAYAWGDNLFG 217

Query: 160 QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
           Q    G     + PV+V+ + +V  +A G +H+LAL EDG +WAWG N+YGQLG  D  P
Sbjct: 218 QL-GDGTYNSSNTPVKVR-INEVTDVAAGEYHSLALLEDGTVWAWGGNDYGQLG--DGIP 273

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            +  +PV+  +   +  IAA   +S AL  DG V+ WG   +G LG G  D      P+ 
Sbjct: 274 NNSLVPVKCGNLRNVKTIAASDRYSLALKYDGTVWAWGYNGNGVLGTGSADNERH--PEP 331

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
           V +    DI ++    T  +A+   G+++ +G    G+LG G K     P+
Sbjct: 332 VQVKGLYDIKKIYAAPTGCMAIDTYGNVWVWGMNQFGQLGDGTKTDRYSPV 382



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 48/310 (15%)

Query: 70  ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
           A+++T    A +G      + + G  +AWG N  GQ G+        G  + R + +  +
Sbjct: 26  AVTDTPPAAAYLGDGCGFMIKNDGSLWAWGNNNNGQLGD--------GTYINRLVPVLIK 77

Query: 130 CAPKLI------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI--------SVPVR 175
               L+      +  +  G  ++V+L  +G VWT G      D  Q+        +V  +
Sbjct: 78  DYTDLLGGNLIGISSIDGGYGYTVILRNDGTVWTSGN----NDAGQLGQRNRADNAVFTQ 133

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           +  +  V  I  G  H LAL+ DG +W+WG+N +GQLG G      +P  V G+ G+   
Sbjct: 134 IPNMSNVARIDAGEGHVLALKVDGTVWSWGDNSFGQLGNGSKALTGEPARVMGVQGIR-- 191

Query: 236 DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
            IAAGG HS A T   E Y WG    G+LG G  + S+  V  ++N     ++  V+ G 
Sbjct: 192 SIAAGGRHSIA-TYGMEAYAWGDNLFGQLGDGTYNSSNTPVKVRIN-----EVTDVAAGE 245

Query: 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355
            HS+AL  DG ++++G  D+G+LG G          +P N   P   G+  +     K +
Sbjct: 246 YHSLALLEDGTVWAWGGNDYGQLGDG----------IPNNSLVPVKCGNLRN----VKTI 291

Query: 356 ACGGRHTLAI 365
           A   R++LA+
Sbjct: 292 AASDRYSLAL 301



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 107/239 (44%), Gaps = 30/239 (12%)

Query: 49  NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
           NS     +G       P++V  +   + + A  GG H +A      AYAWG N +GQ G+
Sbjct: 165 NSFGQLGNGSKALTGEPARVMGVQGIRSIAA--GGRHSIATYGM-EAYAWGDNLFGQLGD 221

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK 168
                 +T   +R + V             VAAG  HS+ L  +G VW WG      D  
Sbjct: 222 GTYNSSNTPVKVRINEVT-----------DVAAGEYHSLALLEDGTVWAWGG----NDYG 266

Query: 169 QIS--------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG--DTQ 218
           Q+         VPV+   L  VK IA    ++LAL+ DG +WAWG N  G LGTG  D +
Sbjct: 267 QLGDGIPNNSLVPVKCGNLRNVKTIAASDRYSLALKYDGTVWAWGYNGNGVLGTGSADNE 326

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
              +P+ V+GL  +  +  A  G    A+   G V+ WG  + G+LG G        VP
Sbjct: 327 RHPEPVQVKGLYDIKKIYAAPTG--CMAIDTYGNVWVWGMNQFGQLGDGTKTDRYSPVP 383


>gi|66818759|ref|XP_643039.1| hypothetical protein DDB_G0276695 [Dictyostelium discoideum AX4]
 gi|60471137|gb|EAL69105.1| hypothetical protein DDB_G0276695 [Dictyostelium discoideum AX4]
          Length = 646

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 37/273 (13%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILR--RDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
           G  YAWG N +GQCG      D T + ++    I+ P     K+I++Q+A G +HS+ + 
Sbjct: 97  GLVYAWGYNYFGQCG------DKTNQTIKVPTSILFP-TIDNKIIIKQIACGDSHSLAIA 149

Query: 151 REGH-VWTWG-QPW------------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
            + + V++WG   W             P  +  I             ++A G+ H++ + 
Sbjct: 150 EQPYGVYSWGVNRWGQLGHGDQLNRNQPTLLSNIGSGSGSGNSISFSMVACGSQHSMIVS 209

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
             G L+ +G    G+LG GD QP+ +P PV  L G ++V +AAG  HS+ +  +G++Y W
Sbjct: 210 NYGELYTFGCGTTGRLGHGDEQPKFKPTPVSSLVGKSIVSVAAGVMHSSCVDSNGKIYSW 269

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKV--------------NLLAGEDIVQVSCGGTHSVALT 302
           G   +G+LG G     +   P K               + L   + ++V CG  H++AL+
Sbjct: 270 GWNRYGQLGNGSVKSQTLPTPPKFQNPKLSDIQQQQQQHHLMKLNFIKVVCGKNHTLALS 329

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
             G +  FG    G+LG G  +    P+++  N
Sbjct: 330 SSGEVVGFGFNACGQLGNGNHMDQLYPVKIEFN 362



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 140/319 (43%), Gaps = 32/319 (10%)

Query: 43  VVAGSRNSLAICDDGKTKTENIPSQV--NALSNTKIV-QAAIGGWHCLAVDDQGR-AYAW 98
           V A   N    C D   +T  +P+ +    + N  I+ Q A G  H LA+ +Q    Y+W
Sbjct: 99  VYAWGYNYFGQCGDKTNQTIKVPTSILFPTIDNKIIIKQIACGDSHSLAIAEQPYGVYSW 158

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N +GQ G   +   +   +L                  VA G  HS++++  G ++T+
Sbjct: 159 GVNRWGQLGHGDQLNRNQPTLLSNIGSGSGSGNSISF-SMVACGSQHSMIVSNYGELYTF 217

Query: 159 GQPWP----PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
           G         GD +    P  V  L  + +  +A G  H+  +  +G +++WG N YGQL
Sbjct: 218 GCGTTGRLGHGDEQPKFKPTPVSSLVGKSIVSVAAGVMHSSCVDSNGKIYSWGWNRYGQL 277

Query: 213 GTGDTQPRSQPIP----------------VQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           G G  + ++ P P                   L  L  + +  G  H+ AL+  GEV G+
Sbjct: 278 GNGSVKSQTLPTPPKFQNPKLSDIQQQQQQHHLMKLNFIKVVCGKNHTLALSSSGEVVGF 337

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G    G+LG G++    ++ P K+     E ++ ++ G  HS+ LT +G  +S+G    G
Sbjct: 338 GFNACGQLGNGNH--MDQLYPVKIEF--NEHVIDIASGYYHSLCLTDNGEAYSWGYMSDG 393

Query: 317 RLGYGRKVT-TGQPMEVPI 334
            LG G   T   +P  +P+
Sbjct: 394 SLGLGEVYTHQTKPKLIPL 412



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 151/390 (38%), Gaps = 88/390 (22%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVV-------KALEPYKVRSVVAGSRNSLAICDDGKT 59
           + +WG    GQLG G+   R    ++        +        V  GS++S+ + + G+ 
Sbjct: 155 VYSWGVNRWGQLGHGDQLNRNQPTLLSNIGSGSGSGNSISFSMVACGSQHSMIVSNYGEL 214

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
            T                +  P+ V++L    IV  A G  H   VD  G+ Y+WG N Y
Sbjct: 215 YTFGCGTTGRLGHGDEQPKFKPTPVSSLVGKSIVSVAAGVMHSSCVDSNGKIYSWGWNRY 274

Query: 104 GQCG---------------EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVV 148
           GQ G               + P+  D   +  +  ++       KL   +V  G  H++ 
Sbjct: 275 GQLGNGSVKSQTLPTPPKFQNPKLSDIQQQQQQHHLM-------KLNFIKVVCGKNHTLA 327

Query: 149 LTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
           L+  G V  +     GQ      + Q+  PV+++  E V  IA G +H+L L ++G  ++
Sbjct: 328 LSSSGEVVGFGFNACGQLGNGNHMDQL-YPVKIEFNEHVIDIASGYYHSLCLTDNGEAYS 386

Query: 204 WGNNEYGQLGTGDT---QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260
           WG    G LG G+    Q + + IP        LV I          TD  + +    G 
Sbjct: 387 WGYMSDGSLGLGEVYTHQTKPKLIP--------LVHIRH------CFTDSNDAFNEIYGR 432

Query: 261 HGRLGFGDNDKSSKMVPQKVNLLA-----GEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
                  D + + + + Q    L+     G+ +  +S G  +S  +T  G +F FG GD 
Sbjct: 433 Q------DENTTQETIDQHKLYLSKKYSVGDTVDMISAGAWNSAIITSSGKLFCFGFGDT 486

Query: 316 GRLGYGRKVTTGQP---------MEVPINI 336
            R G   +     P         +E P NI
Sbjct: 487 YRNGNQSEFDQDMPIIVEPTKWGLERPFNI 516



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED---IVQVSCGGTHSVALTRDGH- 306
           G VY WG    G+ G  D    +  VP  +     ++   I Q++CG +HS+A+    + 
Sbjct: 97  GLVYAWGYNYFGQCG--DKTNQTIKVPTSILFPTIDNKIIIKQIACGDSHSLAIAEQPYG 154

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++S+G    G+LG+G ++   QP      + +   +G G        +VACG +H++ + 
Sbjct: 155 VYSWGVNRWGQLGHGDQLNRNQPT-----LLSNIGSGSGSGNSISFSMVACGSQHSMIVS 209

Query: 367 EW 368
            +
Sbjct: 210 NY 211


>gi|111222947|ref|YP_713741.1| RCC1 repeat- and reductase domain-containing protein [Frankia alni
           ACN14a]
 gi|111150479|emb|CAJ62178.1| hypothetical protein; putative RCC1 repeats and reductase domains
           [Frankia alni ACN14a]
          Length = 421

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 146/344 (42%), Gaps = 36/344 (10%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVR---SVVAGSRNSLAIC 54
           +WG   +GQLG G   +      V  ++            Y +R   +V A   NS    
Sbjct: 67  SWGWNVEGQLGDGTQTDSNRPLPVTGIDSVTAVAGGGVTGYALRRDGTVWAWGANSAGQL 126

Query: 55  DDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114
            DG T   N+P +V  L     V A     + L  D  G  +AWG N  GQ G+      
Sbjct: 127 GDGSTTDNNVPVRVGVLDGVTAVAAGATAGYALRRD--GTVWAWGANSAGQLGD------ 178

Query: 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQI 170
             G    RD   P +      V  +AAG      L R+G VW WG  W      G     
Sbjct: 179 --GTTTDRDF--PVQVGGLADVTAIAAGQNAGYALRRDGTVWAWGAGWTGQLGNGTDTDS 234

Query: 171 SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
             PV+V GL+    +A G     AL+ DG +WAWG N  GQLG G T   +  + V GL 
Sbjct: 235 GTPVQVAGLDDATAVAAGDGTGYALRRDGTVWAWGANGVGQLGNGTTTESNVAVQVGGLD 294

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
             T   IAAG   + AL  DG V  WG    G+LG  D   +S   P +V+ L  +D+  
Sbjct: 295 EATA--IAAGAGSAYALRRDGTVRAWGNNSEGQLG--DGTTTSSTTPVQVDGL--DDVNT 348

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           +  GG    A+  DG  +S+G    G+LG G    +  P+ + I
Sbjct: 349 IGAGGNTGYAVREDGTAWSWGVNWFGQLGDGTNTDSFSPVRIAI 392



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 132/312 (42%), Gaps = 36/312 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEP-----------YKVR---SVVAGSRNSL 51
           ++ AWG+   GQLG G+  +      V  L+            Y +R   +V A   NS 
Sbjct: 114 TVWAWGANSAGQLGDGSTTDNNVPVRVGVLDGVTAVAAGATAGYALRRDGTVWAWGANSA 173

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               DG T   + P QV  L++   + A     + L  D  G  +AWG    GQ G   +
Sbjct: 174 GQLGDGTTTDRDFPVQVGGLADVTAIAAGQNAGYALRRD--GTVWAWGAGWTGQLGNGTD 231

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDI 167
               T          P + A       VAAG      L R+G VW WG         G  
Sbjct: 232 TDSGT----------PVQVAGLDDATAVAAGDGTGYALRRDGTVWAWGANGVGQLGNGTT 281

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
            + +V V+V GL++   IA GA    AL+ DG + AWGNN  GQLG G T   + P+ V 
Sbjct: 282 TESNVAVQVGGLDEATAIAAGAGSAYALRRDGTVRAWGNNSEGQLGDGTTTSSTTPVQVD 341

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK----MVPQKVNLL 283
           GL  +    I AGG    A+ +DG  + WG    G+LG G N  S       +P +V  +
Sbjct: 342 GLDDVNT--IGAGGNTGYAVREDGTAWSWGVNWFGQLGDGTNTDSFSPVRIAIPARVTAI 399

Query: 284 AGEDIVQVSCGG 295
           AG      + GG
Sbjct: 400 AGGGYSGYALGG 411



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 117/244 (47%), Gaps = 20/244 (8%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G A++WG N  GQ G+  +   D+ R        P        V  VA GG     L R+
Sbjct: 63  GVAWSWGWNVEGQLGDGTQT--DSNR--------PLPVTGIDSVTAVAGGGVTGYALRRD 112

Query: 153 GHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
           G VW WG         G     +VPVRV  L+ V  +A GA    AL+ DG +WAWG N 
Sbjct: 113 GTVWAWGANSAGQLGDGSTTDNNVPVRVGVLDGVTAVAAGATAGYALRRDGTVWAWGANS 172

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
            GQLG G T  R  P+ V GL+ +T   IAAG     AL  DG V+ WG G  G+LG G 
Sbjct: 173 AGQLGDGTTTDRDFPVQVGGLADVTA--IAAGQNAGYALRRDGTVWAWGAGWTGQLGNGT 230

Query: 269 NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
           +  S    P +V  L  +D   V+ G     AL RDG ++++G    G+LG G    +  
Sbjct: 231 DTDSG--TPVQVAGL--DDATAVAAGDGTGYALRRDGTVWAWGANGVGQLGNGTTTESNV 286

Query: 329 PMEV 332
            ++V
Sbjct: 287 AVQV 290



 Score = 38.1 bits (87), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           G  + WG    G+LG G    S++ +P    +   + +  V+ GG    AL RDG ++++
Sbjct: 63  GVAWSWGWNVEGQLGDGTQTDSNRPLP----VTGIDSVTAVAGGGVTGYALRRDGTVWAW 118

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPI 334
           G    G+LG G       P+ V +
Sbjct: 119 GANSAGQLGDGSTTDNNVPVRVGV 142


>gi|432863737|ref|XP_004070157.1| PREDICTED: E3 ISG15--protein ligase HERC5-like [Oryzias latipes]
          Length = 892

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 13/213 (6%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQISVPVRVQGLEQVKLIA 186
           ++ V QVA G  H+V LT+EG V+TWGQ    G +        IS P  V+ L  + L+ 
Sbjct: 116 RIPVSQVACGSRHTVALTKEGQVYTWGQN-SRGQLGLGKKGCSISSPQCVRSLSGMPLVQ 174

Query: 187 VGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           V A   H+ AL   G+++ WG N+ GQLG GD+Q R  P  V  L+      I+ G  H+
Sbjct: 175 VSAGGDHSFALSVSGSVFGWGRNDCGQLGLGDSQDRCTPTSVDSLNLKKTTSISCGKDHT 234

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
             LT  G V+ +G G+ G+L  G N   +++ P+ V  L G  + +++CG  H++ L  +
Sbjct: 235 AILTKHGTVFTFGSGQFGQL--GHNSSRNELRPRLVAELWGAKVTRIACGRYHTLVLQEN 292

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             I+SFG  D  +LG         P+  P+ +P
Sbjct: 293 NKIYSFGCNDQNQLGRSNDSHPSVPL--PVLLP 323



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 13/146 (8%)

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           TQ    P  ++    + +  +A G  H+ ALT +G+VY WG+   G+LG G     S   
Sbjct: 102 TQALYLPRMLEAFCRIPVSQVACGSRHTVALTKEGQVYTWGQNSRGQLGLGKKG-CSISS 160

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           PQ V  L+G  +VQVS GG HS AL+  G +F +GR D G+LG G       P  V    
Sbjct: 161 PQCVRSLSGMPLVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLGDSQDRCTPTSV---- 216

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHT 362
                  D ++ +     ++CG  HT
Sbjct: 217 -------DSLNLKKTTS-ISCGKDHT 234



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 53/230 (23%)

Query: 31  VVKALEPYKVRSVVAGSRNSLAICDDGKTKT-----------------ENIPSQVNALSN 73
           +++A     V  V  GSR+++A+  +G+  T                  + P  V +LS 
Sbjct: 110 MLEAFCRIPVSQVACGSRHTVALTKEGQVYTWGQNSRGQLGLGKKGCSISSPQCVRSLSG 169

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
             +VQ + GG H  A+   G  + WG N+ GQ G    +                RC P 
Sbjct: 170 MPLVQVSAGGDHSFALSVSGSVFGWGRNDCGQLGLGDSQ---------------DRCTPT 214

Query: 134 LI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQIS--------VPVRVQG 178
            +          ++ G  H+ +LT+ G V+T+G     G   Q+          P  V  
Sbjct: 215 SVDSLNLKKTTSISCGKDHTAILTKHGTVFTFGS----GQFGQLGHNSSRNELRPRLVAE 270

Query: 179 L--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
           L   +V  IA G +H L LQE+  ++++G N+  QLG  +    S P+PV
Sbjct: 271 LWGAKVTRIACGRYHTLVLQENNKIYSFGCNDQNQLGRSNDSHPSVPLPV 320



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 20/167 (11%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           ++ + S+  WG  + GQLG+G++++R     V +L   K  S+  G  ++  +   G   
Sbjct: 185 LSVSGSVFGWGRNDCGQLGLGDSQDRCTPTSVDSLNLKKTTSISCGKDHTAILTKHGTVF 244

Query: 58  -------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                         ++ E  P  V  L   K+ + A G +H L + +  + Y++G N+  
Sbjct: 245 TFGSGQFGQLGHNSSRNELRPRLVAELWGAKVTRIACGRYHTLVLQENNKIYSFGCNDQN 304

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
           Q G    R +D+   +   +++PQ     L+ R++    + +  L R
Sbjct: 305 QLG----RSNDSHPSVPLPVLLPQVYKCSLLYREIQRTFSSASCLNR 347


>gi|260798953|ref|XP_002594464.1| hypothetical protein BRAFLDRAFT_72132 [Branchiostoma floridae]
 gi|229279698|gb|EEN50475.1| hypothetical protein BRAFLDRAFT_72132 [Branchiostoma floridae]
          Length = 1711

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/243 (37%), Positives = 129/243 (53%), Gaps = 32/243 (13%)

Query: 139  VAAGGTHSVVLTREGHVWTWGQPWP--------PGDIKQISVPVRVQGLE----QVKLIA 186
            V+ G  H  +LT EG V+TWG+P           GD   +  P+RV+ L     QV  +A
Sbjct: 870  VSCGQQHVALLTEEG-VYTWGKPHQGRLGHGQLLGDSGYVP-PMRVETLSIQRVQVMAVA 927

Query: 187  VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
             G  H LAL ++G ++AWG++ YGQLG GD   ++ P  V  L  +  V +A G +HS A
Sbjct: 928  CGQEHTLALCDNG-VYAWGSSTYGQLGLGDWDRQTHPTLVTQLKDVFCVAVATGQYHSAA 986

Query: 247  LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
            L  +G V+ WG G HG+LG G+ +  +K  P  V   A ++ VQVS G  H+  LTR G 
Sbjct: 987  LDGEGRVWMWGWGVHGQLGQGNAENLNK--PHLVA--AVQNAVQVSTGYAHTAVLTRSGE 1042

Query: 307  IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +F+FG G HG+LG+G       P  V            G+  + +A+ VACG  HT+ + 
Sbjct: 1043 VFTFGCGLHGQLGHGATDKVSIPQRV-----------QGIMGK-VAQ-VACGLFHTVVVT 1089

Query: 367  EWQ 369
              Q
Sbjct: 1090 SSQ 1092



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 23/248 (9%)

Query: 76   IVQAAI---GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI--LRRDIVIPQRC 130
            + QAA+   G  H   + ++G  Y WG    G+ G   +   D+G +  +R + +  QR 
Sbjct: 864  LSQAAVVSCGQQHVALLTEEG-VYTWGKPHQGRLGH-GQLLGDSGYVPPMRVETLSIQRV 921

Query: 131  APKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGLEQVKLIA 186
                 V  VA G  H++ L   G V+ WG         GD  + + P  V  L+ V  +A
Sbjct: 922  Q----VMAVACGQEHTLALCDNG-VYAWGSSTYGQLGLGDWDRQTHPTLVTQLKDVFCVA 976

Query: 187  V--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
            V  G +H+ AL  +G +W WG   +GQLG G+ +  ++P  V  +     V ++ G  H+
Sbjct: 977  VATGQYHSAALDGEGRVWMWGWGVHGQLGQGNAENLNKPHLVAAVQNA--VQVSTGYAHT 1034

Query: 245  TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
              LT  GEV+ +G G HG+LG G  DK S  +PQ+V  + G+ + QV+CG  H+V +T  
Sbjct: 1035 AVLTRSGEVFTFGCGLHGQLGHGATDKVS--IPQRVQGIMGK-VAQVACGLFHTVVVTSS 1091

Query: 305  GHIFSFGR 312
              +++FGR
Sbjct: 1092 QQVYTFGR 1099



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 130/325 (40%), Gaps = 75/325 (23%)

Query: 7    IIAWGSGEDGQLGIGNNE-EREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDGKT-- 59
            +  WG    G+LG G    +  +V  ++    +++  +V +V  G  ++LA+CD+G    
Sbjct: 885  VYTWGKPHQGRLGHGQLLGDSGYVPPMRVETLSIQRVQVMAVACGQEHTLALCDNGVYAW 944

Query: 60   -------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                           +  P+ V  L +   V  A G +H  A+D +GR + WG   +GQ 
Sbjct: 945  GSSTYGQLGLGDWDRQTHPTLVTQLKDVFCVAVATGQYHSAALDGEGRVWMWGWGVHGQL 1004

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
            G+              ++  P   A      QV+ G  H+ VLTR G V+T+G       
Sbjct: 1005 GQGNA----------ENLNKPHLVAAVQNAVQVSTGYAHTAVLTRSGEVFTFGCGLHGQL 1054

Query: 163  PPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDGALWAWG----------NNEYGQ 211
              G   ++S+P RVQG+  +V  +A G FH + +     ++ +G           N   Q
Sbjct: 1055 GHGATDKVSIPQRVQGIMGKVAQVACGLFHTVVVTSSQQVYTFGRHPQVWKQYLQNSRRQ 1114

Query: 212  LGTGDTQPRSQPIPVQGLSG------------------------------LTLVDIAAGG 241
                 +  +S      GLSG                               ++V IAAG 
Sbjct: 1115 ARASTSYTQSPAKHAMGLSGELFKPLWVQCRVEGRIRQVVAGAVHNMLLTSSVVAIAAGE 1174

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGF 266
              S A+   G+V+ WGR  HG+LG 
Sbjct: 1175 DFSVAVDRSGKVWVWGRNSHGQLGI 1199


>gi|158257096|dbj|BAF84521.1| unnamed protein product [Homo sapiens]
          Length = 815

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  V    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 44/286 (15%)

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D G  + +G +++ +        ++ G+   + D+ +   C           G  HS V+
Sbjct: 10  DSGAVFTFGKSKFAE--------NNPGKFWFKNDVPVHLSC-----------GDEHSAVV 50

Query: 150 TREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALW 202
           T    ++      WGQ    G    +S P  V+ L  E+VKL A G  H L   E G ++
Sbjct: 51  TGNNKLYMFGSNNWGQ-LGLGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVY 109

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+DG ++ WG    
Sbjct: 110 ATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSE 169

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G++G    + S+  VPQ+V +  G+ +  +SCG  HS  +T DG ++ FG  ++G+LG  
Sbjct: 170 GQIGL--KNVSNVCVPQQVTI--GKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGL- 224

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  P ++  N   P+   + +  + I   VACGG HT+ + E
Sbjct: 225 -------PNQLLGNHRTPQLVSE-IPEKVIQ--VACGGEHTVVLTE 260



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                     L+   ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P      
Sbjct: 174 ----------LKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
            P   +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G     
Sbjct: 224 LPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P  
Sbjct: 283 TSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTL 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            +      +  V+CGG H V  
Sbjct: 343 CSNFLRFIVKLVACGGCHMVVF 364



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAVSK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 24/121 (19%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D G V+ +G+ +     F +N+      P K      +  V +SCG  HS  +T +  
Sbjct: 8   MPDSGAVFTFGKSK-----FAENN------PGKF-WFKNDVPVHLSCGDEHSAVVTGNNK 55

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++ FG  + G+LG G K    +P  V    P               KL ACG  HTL   
Sbjct: 56  LYMFGSNNWGQLGLGSKSAVSKPTCVKALKPEK------------VKLAACGRNHTLVST 103

Query: 367 E 367
           E
Sbjct: 104 E 104


>gi|39996353|ref|NP_952304.1| lipoprotein [Geobacter sulfurreducens PCA]
 gi|39983233|gb|AAR34627.1| ATS1 domain repeat protein [Geobacter sulfurreducens PCA]
          Length = 2082

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 159/385 (41%), Gaps = 66/385 (17%)

Query: 9   AWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDG---------- 57
           AWG    GQLG G        V VV     +  R+   G+ +S+A+  DG          
Sbjct: 421 AWGGNASGQLGDGTTTPSAIPVPVVGGAGNW--RTTATGTAHSVAVRADGTLWAWGDNSS 478

Query: 58  ------KTKTENIPSQVN----ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                  T   + P Q+     A +       A GG H L +   G  ++WG N +GQ G
Sbjct: 479 GQLGIGSTVAASTPQQITVTNPASAGNDWTAVAGGGAHSLGLKADGTLWSWGDNTFGQLG 538

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQ---VAAGGTHSVVLTREGHVWTWG----- 159
                 D TG   R   V      P    R    VAAGG  S+ L  +G +WTWG     
Sbjct: 539 ------DGTGTSNRTTPVQIVTGNPGNFDRNWVAVAAGGVFSLALQADGTIWTWGDNSLL 592

Query: 160 -------------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGN 206
                        Q   P  +   S P        V  IA G  H L+LQ DG LWAWG 
Sbjct: 593 QLGTDPAMLTPATQRNVPAQLAVASPPSTAFNSSWVA-IAAGQDHGLSLQADGTLWAWGA 651

Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGF 266
           N  GQLG G T     P+ V    G+  V +AAG  HS A   DG ++ WG    G+LG 
Sbjct: 652 NSVGQLGNGVTTATFTPVQVINAEGVPYVSLAAGTSHSLAGRSDGTLWAWGNNTSGQLGT 711

Query: 267 GDN-------DKSSKMVPQKV----NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           G +       +     VP ++     + A +D +  + GG+HS AL  +G ++++G+   
Sbjct: 712 GPHPGDADPLNPQPHTVPARILTSNPVSAADDWLVATAGGSHSAALKSNGTLWTWGQNTS 771

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPR 340
           G+LG G    T    ++P  +  PR
Sbjct: 772 GQLGNG----TTTEADIPTALLEPR 792



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 142/306 (46%), Gaps = 42/306 (13%)

Query: 74  TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPK 133
           + +   A GG H L +   G  +A G N++GQ G      D TG      + +P      
Sbjct: 32  SAVPHVAAGGNHVLTLRSDGTLWAAGSNQFGQLG------DGTGINRTSPVQVPGTW--- 82

Query: 134 LIVRQVAAGGTHSVVLTREGHVWTW--------GQPWPPGDIKQISV-PVRVQGLEQVKL 184
              + VAAG THS+ +  +G +W W        GQP   G +      P+R+        
Sbjct: 83  ---KTVAAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIGTGNDWVA 139

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG--LSGLTLVDIAAGGW 242
           ++ G   +  L+ DG LW+WGNN +G+LG G T  R QP+ V    LS    V +AAGG 
Sbjct: 140 VSAGELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGE 199

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI--VQVSCGGTHSVA 300
           H+ AL  DG ++ WG    G+         + ++P    L  G D     +S G  HSVA
Sbjct: 200 HALALQADGTLWAWGANLTGQ----LGTGGTGILPNPTPLKIGTDRDWTAISAGEMHSVA 255

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP-INIPAPRNAGDGVDRRWIAKLVACGG 359
           L  DG ++S+G+   G LG G        + +P  N+  P   G G D  W+A  +A G 
Sbjct: 256 LKADGSLWSWGQNLFGELGNG--------VALPGANVTTPTRVGTGSD--WVA--IAAGA 303

Query: 360 RHTLAI 365
            HT+A+
Sbjct: 304 LHTVAL 309



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 134/298 (44%), Gaps = 26/298 (8%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIV 136
           V  A G  H +A+   G   AWG N  G  G+       T  ++   + +    A     
Sbjct: 297 VAIAAGALHTVALHRNGTVSAWGNNAQGAVGDGTVANRSTPTLIVAPVTLVNNVA----- 351

Query: 137 RQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKL-IAVGAFH 191
             +AAG   S  +   G V+ WG         G    ++ P  +       L +  G   
Sbjct: 352 --IAAGTGVSFSVLANGTVFGWGGNGAGQLGNGTFGAVTAPTVLSAGASAWLGVEPGGAF 409

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +L L+ +G LWAWG N  GQLG G T P + P+PV G +G      A G  HS A+  DG
Sbjct: 410 SLGLRSNGTLWAWGGNASGQLGDGTTTPSAIPVPVVGGAG-NWRTTATGTAHSVAVRADG 468

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL----AGEDIVQVSCGGTHSVALTRDGHI 307
            ++ WG    G+LG G    +S   PQ++ +     AG D   V+ GG HS+ L  DG +
Sbjct: 469 TLWAWGDNSSGQLGIGSTVAAST--PQQITVTNPASAGNDWTAVAGGGAHSLGLKADGTL 526

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +S+G    G+LG G   T+ +   V I    P N     DR W+A  VA GG  +LA+
Sbjct: 527 WSWGDNTFGQLGDGTG-TSNRTTPVQIVTGNPGN----FDRNWVA--VAAGGVFSLAL 577



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 172/398 (43%), Gaps = 71/398 (17%)

Query: 6   SIIAWGSGEDGQLG-------IGNNEE--------REWVCVVKA-LEPYKVR---SVVAG 46
           S+ AWGS   GQLG       +  N+          +WV V    L  + ++   ++ + 
Sbjct: 100 SLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIGTGNDWVAVSAGELTSFGLKGDGTLWSW 159

Query: 47  SRNSLAICDDGKTKTENIPSQVNA--LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
             N      DG T +   P QV A  LSN + V  A GG H LA+   G  +AWG N  G
Sbjct: 160 GNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGEHALALQADGTLWAWGANLTG 219

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ----VAAGGTHSVVLTREGHVWTWGQ 160
           Q G                 ++P     K+   +    ++AG  HSV L  +G +W+WGQ
Sbjct: 220 QLGTG------------GTGILPNPTPLKIGTDRDWTAISAGEMHSVALKADGSLWSWGQ 267

Query: 161 PW---------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
                       PG    ++ P RV        IA GA H +AL  +G + AWGNN  G 
Sbjct: 268 NLFGELGNGVALPG--ANVTTPTRVGTGSDWVAIAAGALHTVALHRNGTVSAWGNNAQGA 325

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVD---IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           +G G    RS P  +  ++ +TLV+   IAAG   S ++  +G V+GWG    G+LG G 
Sbjct: 326 VGDGTVANRSTPTLI--VAPVTLVNNVAIAAGTGVSFSVLANGTVFGWGGNGAGQLGNG- 382

Query: 269 NDKSSKMVPQKVNLLAGEDI-VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
              +   V     L AG    + V  GG  S+ L  +G ++++G    G+LG G      
Sbjct: 383 ---TFGAVTAPTVLSAGASAWLGVEPGGAFSLGLRSNGTLWAWGGNASGQLGDGTT---- 435

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
                P  IP P   G G    W  +  A G  H++A+
Sbjct: 436 ----TPSAIPVPVVGGAG---NW--RTTATGTAHSVAV 464



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 127/287 (44%), Gaps = 20/287 (6%)

Query: 80  AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139
           A G  H L +   G  +AWG N +GQ G+           L  +   P R         V
Sbjct: 86  AAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQ-----LATNKFSPIRIGTGNDWVAV 140

Query: 140 AAGGTHSVVLTREGHVWTWGQPW--PPGDIKQISVPVRVQ----GLEQVKLIAV--GAFH 191
           +AG   S  L  +G +W+WG       GD   +S P  VQ     L   + +AV  G  H
Sbjct: 141 SAGELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQVVADPLSNGRYVAVAAGGEH 200

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
            LALQ DG LWAWG N  GQLGTG T     P P++  +      I+AG  HS AL  DG
Sbjct: 201 ALALQADGTLWAWGANLTGQLGTGGTGILPNPTPLKIGTDRDWTAISAGEMHSVALKADG 260

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKM-VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
            ++ WG+   G LG G     + +  P +V    G D V ++ G  H+VAL R+G + ++
Sbjct: 261 SLWSWGQNLFGELGNGVALPGANVTTPTRVG--TGSDWVAIAAGALHTVALHRNGTVSAW 318

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRN----AGDGVDRRWIAK 353
           G    G +G G       P  +   +    N    AG GV    +A 
Sbjct: 319 GNNAQGAVGDGTVANRSTPTLIVAPVTLVNNVAIAAGTGVSFSVLAN 365



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 96/191 (50%), Gaps = 19/191 (9%)

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           G   V  +A G  H L L+ DG LWA G+N++GQLG G    R+ P+ V G    T   +
Sbjct: 30  GWSAVPHVAAGGNHVLTLRSDGTLWAAGSNQFGQLGDGTGINRTSPVQVPG----TWKTV 85

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLG---FGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           AAG  HS  +  DG ++ WG    G+LG         ++K  P ++    G D V VS G
Sbjct: 86  AAGTTHSLGIKADGSLWAWGSNLFGQLGQPLVNGQLATNKFSPIRIG--TGNDWVAVSAG 143

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
              S  L  DG ++S+G    G LG G  V+  QP++V   +  P + G     R++A  
Sbjct: 144 ELTSFGLKGDGTLWSWGNNLFGELGDGTTVSRPQPVQV---VADPLSNG-----RYVA-- 193

Query: 355 VACGGRHTLAI 365
           VA GG H LA+
Sbjct: 194 VAAGGEHALAL 204


>gi|348583539|ref|XP_003477530.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Cavia
           porcellus]
          Length = 551

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 132/260 (50%), Gaps = 24/260 (9%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P ++++LS+ KI   + G G H +    +G  ++WG N YGQ G         G I    
Sbjct: 89  PRRLDSLSDKKIACLSYGSGPHIVLATTEGEVFSWGHNAYGQLG--------NGTI--NH 138

Query: 124 IVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRV 176
            ++P   +  L    V +VA G  HS+VLT +G V+ WG         G     ++P RV
Sbjct: 139 GLVPSHISTNLSNKQVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQAIPRRV 198

Query: 177 QGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
            G  Q K+   IA G   ++A+ + G ++ WG N  GQLG G +  +  P  V  L G+ 
Sbjct: 199 TGCLQNKVVVNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIR 258

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  +A G  H+  LTD+G+VY WG   +G+LG G  +KS++  P  V +     I   +C
Sbjct: 259 VQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTG--NKSNQSYPTPVVVEKDRIIEIAAC 316

Query: 294 GGTH-SVALTRDGHIFSFGR 312
             TH S A T+ GH++ +G+
Sbjct: 317 HSTHTSAAKTQGGHVYMWGQ 336



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 22/230 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ---GLEQVKLIAVGAFHNLAL 195
           G H V+ T EG V++WG         G I    VP  +      +QV  +A G++H+L L
Sbjct: 108 GPHIVLATTEGEVFSWGHNAYGQLGNGTINHGLVPSHISTNLSNKQVTEVACGSYHSLVL 167

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVY 254
             DG ++AWG N  GQ+G+G T  ++ P  V G L    +V+IA G   S A+ D GEVY
Sbjct: 168 TSDGEVFAWGYNNSGQVGSGSTANQAIPRRVTGCLQNKVVVNIACGQMCSMAVVDTGEVY 227

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG   +G+LG G +   ++  P +V  L G  + +V+CG  H++ LT +G ++++G   
Sbjct: 228 VWGYNGNGQLGLGSS--GNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANS 285

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P  V             V++  I ++ AC   HT A
Sbjct: 286 YGQLGTGNKSNQSYPTPVV------------VEKDRIIEIAACHSTHTSA 323



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +     +Q + Q  +        L    +  ++  G N  G LG GD Q   
Sbjct: 31  WP---IFSLCSEEELQVIRQACVFGSAGNEVLYTTVNDEIFVLGTNCSGCLGLGDVQSTL 87

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  LS   +  ++ G G H    T +GEV+ WG   +G+LG G  +    +VP  +
Sbjct: 88  EPRRLDSLSDKKIACLSYGSGPHIVLATTEGEVFSWGHNAYGQLGNGTINHG--LVPSHI 145

Query: 281 NL-LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +  L+ + + +V+CG  HS+ LT DG +F++G  + G++G G       P  V       
Sbjct: 146 STNLSNKQVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQAIPRRVT------ 199

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                G  +  +   +ACG   ++A+V+
Sbjct: 200 -----GCLQNKVVVNIACGQMCSMAVVD 222



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 26/178 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           + S   + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D G+ 
Sbjct: 167 LTSDGEVFAWGYNNSGQVGSGSTANQAIPRRVTGCLQNKVVVNIACGQMCSMAVVDTGEV 226

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL   ++ + A G  H L + D+G+ YAWG N Y
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSY 286

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG    +    P       I+   A   TH S   T+ GHV+ WGQ
Sbjct: 287 GQLG--------TGNKSNQSYPTPVVVEKDRIIEIAACHSTHTSAAKTQGGHVYMWGQ 336


>gi|418738679|ref|ZP_13295072.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii serovar Castellonis str. 200801910]
 gi|410745377|gb|EKQ98287.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii serovar Castellonis str. 200801910]
          Length = 506

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 148/349 (42%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 193 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRA--AGNRQP---------- 230

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  +++   V  A G  H L +   G   A+G N  GQ G      D      
Sbjct: 231 ----PTLVPGINDA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNG--ANDLNADSF 282

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
             D   P        V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 283 SMD---PVAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   P P Q L+
Sbjct: 339 TPVKVEGLSGIKQIANGRDHILALASDGRIYSWGLNASGQLGIGGNGSPNPTPNPTQILN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
                 + AGG  S ++  +GEV GWG  G    L  G+ +      P K  ++  ++++
Sbjct: 399 IKNASSVWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNTLKVYEPNKA-VVGIDNVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+ AL  DG I+ +G    G LG    +   G P  V I +P
Sbjct: 458 HFGCGATHNFALLGDGEIYGWGWNFKGSLGRQDLQANWGAPNPVSIKLP 506



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 129/288 (44%), Gaps = 39/288 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+   + GG H   + + G  Y  G N +GQ G      D+       D+++
Sbjct: 122 EVNFYFGTKL---SAGGAHSGFLKN-GEVYTVGRNNFGQLGTGNSTGDE-----NNDVIV 172

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                  +    +     +S+ + + G V+TWG               P  P        
Sbjct: 173 KLNSISNIF--SIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQP 230

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-----PIPVQ 227
           P  V G+    + A G  H L L+ DG + A+G N  GQLG G     +      P+ V 
Sbjct: 231 PTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMDPVAVV 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAG 285
           GLS   ++ + AG  HS ALT++GEVY WGR ++G LG G    ++ +   P KV  L+G
Sbjct: 291 GLS--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSG 348

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             I Q++ G  H +AL  DG I+S+G    G+LG G     G P   P
Sbjct: 349 --IKQIANGRDHILALASDGRIYSWGLNASGQLGIG---GNGSPNPTP 391



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 136/324 (41%), Gaps = 50/324 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-----EEPERKDDTGRILR 121
           ++N++SN  I        + +A+   GR Y WG N  GQ G       P      G    
Sbjct: 173 KLNSISN--IFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN--- 227

Query: 122 RDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQI 170
                  R  P L+         A G  H+++L  +G V  +GQ           D+   
Sbjct: 228 -------RQPPTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNAD 280

Query: 171 SV---PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP----RSQP 223
           S    PV V GL  V  +  G+ H+ AL E+G ++ WG N+YG LG G        +S P
Sbjct: 281 SFSMDPVAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTP 340

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V+GLSG+    IA G  H  AL  DG +Y WG    G+LG G N  S    P    +L
Sbjct: 341 VKVEGLSGIK--QIANGRDHILALASDGRIYSWGLNASGQLGIGGNG-SPNPTPNPTQIL 397

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFG-RGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
             ++   V  GGT S ++ ++G +  +G  G+   L  G   T        + +  P  A
Sbjct: 398 NIKNASSVWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNT--------LKVYEPNKA 449

Query: 343 GDGVDRRWIAKLVACGGRHTLAIV 366
             G+D         CG  H  A++
Sbjct: 450 VVGIDN---VIHFGCGATHNFALL 470



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 27/240 (11%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQ 169
           R  + D  I Q+        +++AGG HS  L + G V+T G+            GD + 
Sbjct: 110 RFKKPDGTILQKEVNFYFGTKLSAGGAHSGFL-KNGEVYTVGRNNFGQLGTGNSTGD-EN 167

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP-------- 219
             V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P        
Sbjct: 168 NDVIVKLNSISNIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN 227

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMV 276
           R  P  V G++   +   A G  H+  L  DG V  +G+   G+LG G ND    S  M 
Sbjct: 228 RQPPTLVPGINDAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMD 285

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P  V ++   D++QV  G  HS ALT +G ++ +GR  +G LG GR          P+ +
Sbjct: 286 P--VAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKV 343


>gi|21619468|gb|AAH31624.1| RPGR protein [Homo sapiens]
 gi|119579847|gb|EAW59443.1| retinitis pigmentosa GTPase regulator, isoform CRA_c [Homo sapiens]
 gi|325464495|gb|ADZ16018.1| retinitis pigmentosa GTPase regulator [synthetic construct]
          Length = 480

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 148/324 (45%), Gaps = 32/324 (9%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLGL-- 69

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGD 166
             K    +      + P++      V+  A G  H++V T  G+V+  G         GD
Sbjct: 70  GSKSAISKPTCVKALKPEK------VKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGD 123

Query: 167 IKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
            ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    +  
Sbjct: 124 TEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS--NVC 181

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V+ +
Sbjct: 182 VPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEI 241

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
             E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI       
Sbjct: 242 P-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI------- 292

Query: 344 DGVDRRWIAKLVACGGRHTLAIVE 367
               R      ++CG  HT  I +
Sbjct: 293 ----RDQTISYISCGENHTALITD 312



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G +
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLK 175

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
                        ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P       P
Sbjct: 176 N----------VSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLP 225

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRS 221
              +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G      S
Sbjct: 226 NQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFETS 284

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P   +
Sbjct: 285 EPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCS 344

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
                 +  V+CGG H V  
Sbjct: 345 NFLRFIVKLVACGGCHMVVF 364



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 44/288 (15%)

Query: 89  VDDQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           + D G  + +G +++ +        ++ G+   + D+ +   C           G  HS 
Sbjct: 8   MPDSGAVFTFGKSKFAE--------NNPGKFWFKNDVPVHLSC-----------GDEHSA 48

Query: 148 VLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGA 200
           V+T    ++      WGQ    G    IS P  V+ L  E+VKL A G  H L   E G 
Sbjct: 49  VVTGNNKLYMFGSNNWGQ-LGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGN 107

Query: 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
           ++A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+DG ++ WG  
Sbjct: 108 VYATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDN 167

Query: 260 EHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             G++G    + S+  VPQ+V +  G+ +  +SCG  HS  +T DG ++ FG  ++G+LG
Sbjct: 168 SEGQIGL--KNVSNVCVPQQVTI--GKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                    P ++  N   P+   + +  + I   VACGG HT+ + E
Sbjct: 224 L--------PNQLLGNHRTPQLVSE-IPEKVIQ--VACGGEHTVVLTE 260


>gi|41053397|ref|NP_956285.1| RCC1 and BTB domain-containing protein 1 [Danio rerio]
 gi|28278439|gb|AAH45877.1| Regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Danio rerio]
 gi|182890896|gb|AAI65711.1| Rcbtb1 protein [Danio rerio]
          Length = 531

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 24/241 (9%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQ----ISVPVRVQGLEQVKL 184
           K ++      G H +++T +G ++ WG         G   Q    I V   +QG ++V  
Sbjct: 74  KKLISLSYGSGPHVLLVTEDGELYAWGHNGYSQLGNGTTNQGVSPILVSTNLQG-KRVTE 132

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWH 243
           ++ G+ H+LAL  +G ++AWG N  GQ+G+G T  +  P  V   L    +V+IA G   
Sbjct: 133 VSCGSHHSLALTHEGEVFAWGYNNCGQVGSGSTANQPTPRKVSNCLQNKVIVNIACGQTS 192

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S A+TD+GEVYGWG   +G+LG G+N   +++ P ++  L G  ++Q++ G  HS+ALT 
Sbjct: 193 SMAVTDNGEVYGWGYNGNGQLGLGNN--GNQLTPCRLIALQGFCVLQIASGYAHSLALTD 250

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +G ++++G   +G+LG G K     P++V              ++  I ++ AC   HT 
Sbjct: 251 EGLLYAWGANTYGQLGTGNKSNQLSPVQVM------------TEKERIVEIAACHSTHTS 298

Query: 364 A 364
           A
Sbjct: 299 A 299



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 137/266 (51%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G +++   P +++ LS  K++  + G G H L V + G  YAWG N Y Q G     +  
Sbjct: 57  GDSQSTIAPKKLDCLSGKKLISLSYGSGPHVLLVTEDGELYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
              IL    +  +R      V +V+ G  HS+ LT EG V+ WG         G      
Sbjct: 116 VSPILVSTNLQGKR------VTEVSCGSHHSLALTHEGEVFAWGYNNCGQVGSGSTANQP 169

Query: 172 VPVRVQGLEQVKLI---AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P +V    Q K+I   A G   ++A+ ++G ++ WG N  GQLG G+   +  P  +  
Sbjct: 170 TPRKVSNCLQNKVIVNIACGQTSSMAVTDNGEVYGWGYNGNGQLGLGNNGNQLTPCRLIA 229

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L G  ++ IA+G  HS ALTD+G +Y WG   +G+LG G  +KS+++ P +V +   E I
Sbjct: 230 LQGFCVLQIASGYAHSLALTDEGLLYAWGANTYGQLGTG--NKSNQLSPVQV-MTEKERI 286

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C  TH S A T+ G ++ +G+
Sbjct: 287 VEIAACHSTHTSAAKTQSGQVYMWGQ 312



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
            +  + Q  +    A   + +  D  ++  G N    LGTGD+Q    P  +  LSG  L
Sbjct: 17  ELSSIRQACIFGASANEAIYITHDDEVYVLGLNCSNCLGTGDSQSTIAPKKLDCLSGKKL 76

Query: 235 VDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           + ++ G G H   +T+DGE+Y WG   + +LG G  ++    +    N L G+ + +VSC
Sbjct: 77  ISLSYGSGPHVLLVTEDGELYAWGHNGYSQLGNGTTNQGVSPILVSTN-LQGKRVTEVSC 135

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  HS+ALT +G +F++G  + G++G G             N P PR   + +  + I  
Sbjct: 136 GSHHSLALTHEGEVFAWGYNNCGQVGSGSTA----------NQPTPRKVSNCLQNKVIVN 185

Query: 354 LVACGGRHTLAIVE 367
            +ACG   ++A+ +
Sbjct: 186 -IACGQTSSMAVTD 198



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   + ++  G  +S+A+ D+G+       
Sbjct: 149 VFAWGYNNCGQVGSGSTANQPTPRKVSNCLQNKVIVNIACGQTSSMAVTDNGEVYGWGYN 208

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL    ++Q A G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 209 GNGQLGLGNNGNQLTPCRLIALQGFCVLQIASGYAHSLALTDEGLLYAWGANTYGQLG-- 266

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
                 TG    +   +      + IV   A   TH S   T+ G V+ WGQ
Sbjct: 267 ------TGNKSNQLSPVQVMTEKERIVEIAACHSTHTSAAKTQSGQVYMWGQ 312


>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis]
 gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis]
          Length = 478

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 157/398 (39%), Gaps = 106/398 (26%)

Query: 60  KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR- 118
           K   IP          +V+AA G  HC++V + G  + WG  E     +  +R D+TG+ 
Sbjct: 94  KHGEIPEPFPLPCEASVVKAAAGWAHCVSVTETGEVFTWGWKECVPSVKIIQR-DNTGKQ 152

Query: 119 ----------------------------------ILRRDIVIPQR--------------- 129
                                             I++R  V P +               
Sbjct: 153 NALLQTEKVSSRSEGSSLTRGTVLNSDSKRTGDEIVKRRRVSPTKEDFESSPSGDEFFTV 212

Query: 130 ------CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVRVQG 178
                  AP + +  VAAGG H++ L+  G VW WG     Q      IK +S P  +  
Sbjct: 213 LPLMVTLAPGVRITNVAAGGRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPC 272

Query: 179 LE-----------------------------QVKLIAVGAFHNLALQEDGALWAWGNNEY 209
           ++                              VK IA G  H+  + + GAL  +G   Y
Sbjct: 273 IDASASGKDRSLIVHQGNLTPSAQASTFPGSYVKEIACGGRHSAIVTDTGALLTFGWGLY 332

Query: 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
           GQ G G T  + +P  V  LSG+ ++ IAAG WH+  ++ DG VY +G  + G+LG   +
Sbjct: 333 GQCGQGTTNDQLRPACVPALSGIKVISIAAGLWHTVCISADGHVYTFGGNQFGQLGTDTD 392

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
               K +      L  +    VSCG  HS  LT DG ++S+G   +G+LG G  +    P
Sbjct: 393 QTEPKQL--YAPSLGSKHAKIVSCGARHSAVLTEDGQVYSWGWNKYGQLGLGDSIDRNIP 450

Query: 330 MEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +VPI    P+N             +ACG  HTL + E
Sbjct: 451 SQVPIEGYRPKN-------------IACGWWHTLLLAE 475



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 39/254 (15%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVN 69
           WG G +GQLG+G+   R  +     L P  + +  +G   SL +     T +    +Q +
Sbjct: 247 WGYGGEGQLGLGS---RIKMVSSPHLIPC-IDASASGKDRSLIVHQGNLTPS----AQAS 298

Query: 70  ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR 129
               + + + A GG H   V D G    +G   YGQCG+       T     R   +P  
Sbjct: 299 TFPGSYVKEIACGGRHSAIVTDTGALLTFGWGLYGQCGQ------GTTNDQLRPACVPAL 352

Query: 130 CAPKLIVRQVAAGGTHSVVLTREGHVWTWG------------QPWPPGDIKQISVPVRVQ 177
              K+I   +AAG  H+V ++ +GHV+T+G            Q  P    KQ+  P    
Sbjct: 353 SGIKVI--SIAAGLWHTVCISADGHVYTFGGNQFGQLGTDTDQTEP----KQLYAPSL-- 404

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP--IPVQGLSGLTLV 235
           G +  K+++ GA H+  L EDG +++WG N+YGQLG GD+  R+ P  +P++G       
Sbjct: 405 GSKHAKIVSCGARHSAVLTEDGQVYSWGWNKYGQLGLGDSIDRNIPSQVPIEGYRP---K 461

Query: 236 DIAAGGWHSTALTD 249
           +IA G WH+  L +
Sbjct: 462 NIACGWWHTLLLAE 475


>gi|332030031|gb|EGI69856.1| X-linked retinitis pigmentosa GTPase regulator-like protein
            [Acromyrmex echinatior]
          Length = 2956

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/238 (32%), Positives = 123/238 (51%), Gaps = 27/238 (11%)

Query: 137  RQVAAGGTHSVVLTREGHVWTWGQP-----WPPGDIKQISVPVRVQGLEQVKL----IAV 187
            R ++ G +H V L R G+++TWG            + +   P  +   + +K+    ++ 
Sbjct: 1894 RSLSTGFSH-VALVRNGNIYTWGSSVQGCLGTGSSVLRYGTPHAICFFKSMKIEVFSVSC 1952

Query: 188  GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
            G  H LA+  +G ++AWG +++GQLG G     S P  V  L+   +VD  AG +HS AL
Sbjct: 1953 GHCHTLAVTNNG-IYAWGASQFGQLGLGKVLQCSSPELVTSLAQEIIVDAVAGQYHSVAL 2011

Query: 248  TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            T DG ++ WG G HG+LG G+ D+  K +P  V  L G  +  +S G  H++AL+ DG +
Sbjct: 2012 TADGRIFTWGWGVHGQLGHGNTDE--KAIPSLVKALLGIVVCCISAGYAHTLALSIDGVL 2069

Query: 308  FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            ++FG    G+LG G  + +     VPI +  P       DR     L++ G  H LA+
Sbjct: 2070 YAFGCNILGQLGTGDNIKS----SVPIKVSLP-------DR---ITLISTGYFHNLAV 2113



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 22/238 (9%)

Query: 83   GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC---APKLIVRQV 139
            G+  +A+   G  Y WG +  G  G        TG  + R       C   + K+ V  V
Sbjct: 1899 GFSHVALVRNGNIYTWGSSVQGCLG--------TGSSVLRYGTPHAICFFKSMKIEVFSV 1950

Query: 140  AAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNL 193
            + G  H++ +T  G ++ WG         G + Q S P  V  L Q  ++    G +H++
Sbjct: 1951 SCGHCHTLAVTNNG-IYAWGASQFGQLGLGKVLQCSSPELVTSLAQEIIVDAVAGQYHSV 2009

Query: 194  ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            AL  DG ++ WG   +GQLG G+T  ++ P  V+ L G+ +  I+AG  H+ AL+ DG +
Sbjct: 2010 ALTADGRIFTWGWGVHGQLGHGNTDEKAIPSLVKALLGIVVCCISAGYAHTLALSIDGVL 2069

Query: 254  YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            Y +G    G+LG GDN KSS  VP KV+L   + I  +S G  H++A++    ++ +G
Sbjct: 2070 YAFGCNILGQLGTGDNIKSS--VPIKVSL--PDRITLISTGYFHNLAVSNTNKLYIWG 2123



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 32/223 (14%)

Query: 6    SIIAWGSGEDGQLGIGNNEER----EWVCVVKALEPYKVRSVVAGSRNSLAICDDG---- 57
            +I  WGS   G LG G++  R      +C  K+++  +V SV  G  ++LA+ ++G    
Sbjct: 1910 NIYTWGSSVQGCLGTGSSVLRYGTPHAICFFKSMK-IEVFSVSCGHCHTLAVTNNGIYAW 1968

Query: 58   -----------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                       K    + P  V +L+   IV A  G +H +A+   GR + WG   +GQ 
Sbjct: 1969 GASQFGQLGLGKVLQCSSPELVTSLAQEIIVDAVAGQYHSVALTADGRIFTWGWGVHGQL 2028

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPW 162
            G         G    + I    +    ++V  ++AG  H++ L+ +G ++ +G       
Sbjct: 2029 GH--------GNTDEKAIPSLVKALLGIVVCCISAGYAHTLALSIDGVLYAFGCNILGQL 2080

Query: 163  PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
              GD  + SVP++V   +++ LI+ G FHNLA+     L+ WG
Sbjct: 2081 GTGDNIKSSVPIKVSLPDRITLISTGYFHNLAVSNTNKLYIWG 2123



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 122/319 (38%), Gaps = 64/319 (20%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
            +   I AWG+ + GQLG+G   +     +V +L    +   VAG  +S+A+  DG+    
Sbjct: 1961 TNNGIYAWGASQFGQLGLGKVLQCSSPELVTSLAQEIIVDAVAGQYHSVALTADGRIFTW 2020

Query: 59   ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                        T  + IPS V AL    +   + G  H LA+   G  YA+G N  GQ 
Sbjct: 2021 GWGVHGQLGHGNTDEKAIPSLVKALLGIVVCCISAGYAHTLALSIDGVLYAFGCNILGQL 2080

Query: 107  GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG------- 159
            G      D+    +   + +P R      +  ++ G  H++ ++    ++ WG       
Sbjct: 2081 GT----GDNIKSSVPIKVSLPDR------ITLISTGYFHNLAVSNTNKLYIWGASPQVLR 2130

Query: 160  -QPWPPGDIK----QISVPVRVQGLEQVKLIAV------GAFHNLALQEDGALWAWGNNE 208
             Q      I+    Q +   R + L +++ I        G       ++DG      + E
Sbjct: 2131 LQAQAQKKIRISEQQDANEKRNKALGELEKIPSDATNLNGKIKEFLNKKDGVQTKSSHTE 2190

Query: 209  YGQLGTG-------------------DTQPRSQPIPVQ-GLSGLTLVDIAAGGWHSTALT 248
               + T                    ++Q   +P  V   L    +  I+ G  H+  +T
Sbjct: 2191 TSDIETQKKFETKNAHLKDFNFDLIEESQTHLKPCIVDTSLVKGQINQISVGCHHNALIT 2250

Query: 249  DDGEVYGWGRGEHGRLGFG 267
             DG +Y WGR   G++G G
Sbjct: 2251 KDGSLYTWGRNLDGQIGNG 2269



 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 181  QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
            Q+  I+VG  HN  + +DG+L+ WG N  GQ+G G  +    P P+
Sbjct: 2235 QINQISVGCHHNALITKDGSLYTWGRNLDGQIGNGTRREVLIPTPL 2280


>gi|302810693|ref|XP_002987037.1| hypothetical protein SELMODRAFT_125311 [Selaginella moellendorffii]
 gi|300145202|gb|EFJ11880.1| hypothetical protein SELMODRAFT_125311 [Selaginella moellendorffii]
          Length = 228

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 97  AWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVW 156
           +WG  E+GQ G +     D   +    +    R + +L+  +VA G +H++ LT  G V+
Sbjct: 3   SWGCGEFGQLGLK-----DAAGVFTSPLPRFLRGSRELLFVRVACGSSHTLALTGSGDVY 57

Query: 157 TWGQ----PWPPGDIKQISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYG 210
           ++GQ        G  +  S PV V  L  + +  IA G  H+ AL  +G L++WG  +YG
Sbjct: 58  SFGQGTFGALGHGTTESCSSPVIVDSLWGLGIVQIACGDNHSCALTVEGQLFSWGRGKYG 117

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           QLG G  +   QP+PV  LS   L  +  G  ++ A+  DG+++ WG G  G+ G G  D
Sbjct: 118 QLGCGSVENHLQPVPVTALSDRLLTQVVCGADYTMAIDSDGQLFSWGHGHWGQTGHGTQD 177

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
               +VP+ V  L  ++IVQ S G  H+VALT  G ++++G  + G++
Sbjct: 178 N--ILVPKLVCSLENDNIVQASAGARHAVALTSGGGVYAWGDNEQGQV 223



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 2/139 (1%)

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS 244
           +A G+ H LAL   G ++++G   +G LG G T+  S P+ V  L GL +V IA G  HS
Sbjct: 40  VACGSSHTLALTGSGDVYSFGQGTFGALGHGTTESCSSPVIVDSLWGLGIVQIACGDNHS 99

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            ALT +G+++ WGRG++G+LG G  +   + VP  V  L+   + QV CG  +++A+  D
Sbjct: 100 CALTVEGQLFSWGRGKYGQLGCGSVENHLQPVP--VTALSDRLLTQVVCGADYTMAIDSD 157

Query: 305 GHIFSFGRGDHGRLGYGRK 323
           G +FS+G G  G+ G+G +
Sbjct: 158 GQLFSWGHGHWGQTGHGTQ 176



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 201 LWAWGNNEYGQLGTGDTQ-PRSQPIP--VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
           L +WG  E+GQLG  D     + P+P  ++G   L  V +A G  H+ ALT  G+VY +G
Sbjct: 1   LVSWGCGEFGQLGLKDAAGVFTSPLPRFLRGSRELLFVRVACGSSHTLALTGSGDVYSFG 60

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
           +G  G LG G  +  S   P  V+ L G  IVQ++CG  HS ALT +G +FS+GRG +G+
Sbjct: 61  QGTFGALGHGTTESCSS--PVIVDSLWGLGIVQIACGDNHSCALTVEGQLFSWGRGKYGQ 118

Query: 318 LGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           LG G      QP  VP+   + R          +   V CG  +T+AI
Sbjct: 119 LGCGSVENHLQP--VPVTALSDR----------LLTQVVCGADYTMAI 154



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 43/236 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRS--------VVAGSRNSLAICDDG- 57
           +++WG GE GQLG+     ++   V  +  P  +R         V  GS ++LA+   G 
Sbjct: 1   LVSWGCGEFGQLGL-----KDAAGVFTSPLPRFLRGSRELLFVRVACGSSHTLALTGSGD 55

Query: 58  ---------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNE 102
                           T++ + P  V++L    IVQ A G  H  A+  +G+ ++WG  +
Sbjct: 56  VYSFGQGTFGALGHGTTESCSSPVIVDSLWGLGIVQIACGDNHSCALTVEGQLFSWGRGK 115

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-P 161
           YGQ G         G +      +P       ++ QV  G  +++ +  +G +++WG   
Sbjct: 116 YGQLG--------CGSVENHLQPVPVTALSDRLLTQVVCGADYTMAIDSDGQLFSWGHGH 167

Query: 162 WPP---GDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQL 212
           W     G    I VP  V  LE   ++  + GA H +AL   G ++AWG+NE GQ+
Sbjct: 168 WGQTGHGTQDNILVPKLVCSLENDNIVQASAGARHAVALTSGGGVYAWGDNEQGQV 223


>gi|47221092|emb|CAG12786.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 527

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 26/242 (10%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL---EQVKLI 185
           K IV      G H  + T +G V++WG         G       P  V      ++V  +
Sbjct: 74  KKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGNGTTNHGLTPALVSTNLLGKRVIEV 133

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---TLVDIAAGGW 242
           A G+ H +AL  DG ++AWG N  GQ+G+G T   +QP P +  S L    +V+IA G  
Sbjct: 134 ACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTA--NQPTPRRVSSCLQNKAVVNIACGQL 191

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT 302
            S A+ D GE+YGWG   +G+LG G+N   ++  P ++  L G  ++QV+CG  H++ALT
Sbjct: 192 CSMAVLDSGEIYGWGYNCNGQLGLGNN--GNQQTPCRIAALQGVSVIQVACGYAHTLALT 249

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            +G ++++G   +G+LG G K     P  +              D+  +A++ AC   HT
Sbjct: 250 DEGFVYAWGANSYGQLGTGNKCNQALPTLI------------NTDKERMAEVAACHTSHT 297

Query: 363 LA 364
            A
Sbjct: 298 SA 299



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 20/258 (7%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++AL   KIV  + G G H       G  ++WG N Y Q G        T  ++  +
Sbjct: 65  PRRIDALCGKKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGNGTTNHGLTPALVSTN 124

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL 179
           ++  +       V +VA G  H++ LT +G V+ WG         G       P RV   
Sbjct: 125 LLGKR-------VIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTANQPTPRRVSSC 177

Query: 180 EQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q K    IA G   ++A+ + G ++ WG N  GQLG G+   +  P  +  L G++++ 
Sbjct: 178 LQNKAVVNIACGQLCSMAVLDSGEIYGWGYNCNGQLGLGNNGNQQTPCRIAALQGVSVIQ 237

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-SCGG 295
           +A G  H+ ALTD+G VY WG   +G+LG G  +K ++ +P  +N    E + +V +C  
Sbjct: 238 VACGYAHTLALTDEGFVYAWGANSYGQLGTG--NKCNQALPTLIN-TDKERMAEVAACHT 294

Query: 296 TH-SVALTRDGHIFSFGR 312
           +H S A T+ G +  +G+
Sbjct: 295 SHTSAAKTQSGQVLMWGQ 312



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 26/245 (10%)

Query: 135 IVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
           ++RQ    G+    ++ +T    V+  G         GD++    P R+  L   K++++
Sbjct: 20  LIRQACVFGSAANEAIYVTVNDEVFALGTNCSGCLGLGDLQSTIEPRRIDALCGKKIVSL 79

Query: 188 G---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-GLSGLTLVDIAAGGWH 243
                 H      DG +++WG+N Y QLG G T     P  V   L G  ++++A G  H
Sbjct: 80  SYGTGPHVAIATADGEVFSWGHNGYSQLGNGTTNHGLTPALVSTNLLGKRVIEVACGSHH 139

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALT 302
           + ALT DGEV+ WG    G++G G    +++  P++V+  L  + +V ++CG   S+A+ 
Sbjct: 140 TIALTTDGEVFAWGYNNSGQVGSGST--ANQPTPRRVSSCLQNKAVVNIACGQLCSMAVL 197

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
             G I+ +G   +G+LG G       P  +         A  GV        VACG  HT
Sbjct: 198 DSGEIYGWGYNCNGQLGLGNNGNQQTPCRIA--------ALQGVS----VIQVACGYAHT 245

Query: 363 LAIVE 367
           LA+ +
Sbjct: 246 LALTD 250



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   +  +  P  ++ + Q  +    A   + +  +  ++A G N  G LG GD Q   
Sbjct: 7   WP---VFALLPPEELRLIRQACVFGSAANEAIYVTVNDEVFALGTNCSGCLGLGDLQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  L G  +V ++ G G H    T DGEV+ WG   + +LG G  +          
Sbjct: 64  EPRRIDALCGKKIVSLSYGTGPHVAIATADGEVFSWGHNGYSQLGNGTTNHGLTPALVST 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL G+ +++V+CG  H++ALT DG +F++G  + G++G G             N P PR
Sbjct: 124 NLL-GKRVIEVACGSHHTIALTTDGEVFAWGYNNSGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +  + +   +ACG   ++A+++
Sbjct: 173 RVSSCLQNKAVVN-IACGQLCSMAVLD 198



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 28/173 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D G+       
Sbjct: 149 VFAWGYNNSGQVGSGSTANQPTPRRVSSCLQNKAVVNIACGQLCSMAVLDSGEIYGWGYN 208

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL    ++Q A G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 209 CNGQLGLGNNGNQQTPCRIAALQGVSVIQVACGYAHTLALTDEGFVYAWGANSYGQLGTG 268

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH--SVVLTREGHVWTWGQ 160
            +       ++  D         K  + +VAA  T   S   T+ G V  WGQ
Sbjct: 269 NKCNQALPTLINTD---------KERMAEVAACHTSHTSAAKTQSGQVLMWGQ 312


>gi|334330728|ref|XP_001378629.2| PREDICTED: RCC1 and BTB domain-containing protein 1 [Monodelphis
           domestica]
          Length = 531

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 33/259 (12%)

Query: 121 RRDIVIPQR----CAPKLIVRQVAAG-GTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
            +  ++P++    C  K  ++ ++ G G H ++ T +G V+ WG         G   Q  
Sbjct: 59  NQSTIVPKKLEALCGKK--IKSLSYGSGPHVLLSTEDGMVYAWGHNGYSQLGNGTTNQGI 116

Query: 172 VPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P++V     ++QV  +A G+ H++AL  DG ++AWG N  GQ+G+G T   +QP P + 
Sbjct: 117 APIQVCTNLLIKQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTA--NQPTPRKV 174

Query: 229 LSGLTL---VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            + L +   V IA G   S A+ D+GEVYGWG   +G+LG G+N   +++ P +V  L  
Sbjct: 175 TNCLHIKRVVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNN--GNQLTPCRVAALHS 232

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             ++Q+ CG  H++ALT +G ++++G   +G+LG G K     P ++             
Sbjct: 233 VCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQIM------------ 280

Query: 346 VDRRWIAKLVACGGRHTLA 364
           V++  + ++ AC   HT A
Sbjct: 281 VEKERVVEIAACHSAHTSA 299



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTIVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGMVYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+++QV   A G  HS+ L  +G V+ WG         G   
Sbjct: 116 ---------IAPIQVCTNLLIKQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTA 166

Query: 169 QISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P +V     +K    IA G   ++A+ ++G ++ WG N  GQLG G+   +  P  
Sbjct: 167 NQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPCR 226

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L  + ++ I  G  H+ ALTD+G +Y WG   +G+LG G  +KS+ + P ++ ++  
Sbjct: 227 VAALHSVCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNLLSPAQI-MVEK 283

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E +V++ +C   H S A T+ GH++ +G+
Sbjct: 284 ERVVEIAACHSAHTSAAKTQGGHVYMWGQ 312



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P  +  + +  +    A   + +  +  ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQEIASIRKACVFGTSANEAIYVTHNDEVFVFGLNCSNCLGTGDNQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ L G  +  ++ G G H    T+DG VY WG   + +LG G  ++    +    
Sbjct: 64  VPKKLEALCGKKIKSLSYGSGPHVLLSTEDGMVYAWGHNGYSQLGNGTTNQGIAPIQVCT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL  + +++V+CG  HS+AL  DG ++++G  + G++G G             N P PR
Sbjct: 124 NLLI-KQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KVTNCLHIKRVVS-IACGQTSSMAVLD 198



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 32/181 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDD 56
           +A+   + AWG    GQ+G G+       R+   V   L   +V S+  G  +S+A+ D+
Sbjct: 143 LAADGEVYAWGYNNCGQVGSGSTANQPTPRK---VTNCLHIKRVVSIACGQTSSMAVLDN 199

Query: 57  GKTK----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G+                   +  P +V AL +  ++Q   G  H LA+ D+G  YAWG 
Sbjct: 200 GEVYGWGYNGNGQLGLGNNGNQLTPCRVAALHSVCVLQIVCGYAHTLALTDEGLLYAWGA 259

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWG 159
           N YGQ G       +   +L    ++ ++   + +V   A    H S   T+ GHV+ WG
Sbjct: 260 NTYGQLG-----TGNKSNLLSPAQIMVEK---ERVVEIAACHSAHTSAAKTQGGHVYMWG 311

Query: 160 Q 160
           Q
Sbjct: 312 Q 312


>gi|159038147|ref|YP_001537400.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
 gi|157916982|gb|ABV98409.1| regulator of chromosome condensation, RCC1 [Salinispora arenicola
           CNS-205]
          Length = 555

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 136/310 (43%), Gaps = 18/310 (5%)

Query: 33  KALEPYKVRS--VVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVD 90
             L P  V S  V+A   N      DG     + P  V+    T +   A G  H LA+ 
Sbjct: 46  NTLSPSTVGSDTVLAWGDNLFGQLGDGTGADSDTPIPVSLPPGTTVTAIAAGDEHSLALT 105

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
             G   AWG N +GQ G+E     +T R     + +P    P   V  +AAG +HS+ +T
Sbjct: 106 STGTVLAWGRNRFGQLGDE----TNTSRSTPVTVSLP----PGTTVTAIAAGRSHSLAIT 157

Query: 151 REGHVWTWGQPWP----PGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAW 204
             G    WG+ +      G     + PV V       V  IA G  H+LA+   G   AW
Sbjct: 158 STGSALAWGRNFSGQLGDGTTNDSNKPVAVNLPPGTTVTAIAAGDGHSLAVTSAGTALAW 217

Query: 205 GNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           G N  GQLG G T   + P+ V    G T+ DIAAG  HS A+T  G   GWGR   G+L
Sbjct: 218 GRNFAGQLGDGTTNDSTTPVTVSVAPGTTVTDIAAGRVHSLAITSAGTALGWGRNGSGQL 277

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV 324
             GD   +    P  V+   G     V+ G  HS+A+T  G   + G   +G+LG G   
Sbjct: 278 --GDGTTNDSTTPTTVSPPTGTVFTTVAAGEDHSLAVTSAGTALAAGDNLYGQLGDGTNT 335

Query: 325 TTGQPMEVPI 334
           ++   + V +
Sbjct: 336 SSNTFVTVSL 345



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 128/323 (39%), Gaps = 35/323 (10%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD----- 55
           + ST +++AWG    GQLG   N  R     V       V ++ AG  +SLAI       
Sbjct: 104 LTSTGTVLAWGRNRFGQLGDETNTSRSTPVTVSLPPGTTVTAIAAGRSHSLAITSTGSAL 163

Query: 56  -----------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
                      DG T   N P  VN    T +   A G  H LAV   G A AWG N  G
Sbjct: 164 AWGRNFSGQLGDGTTNDSNKPVAVNLPPGTTVTAIAAGDGHSLAVTSAGTALAWGRNFAG 223

Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--PW 162
           Q G+       T         +    AP   V  +AAG  HS+ +T  G    WG+    
Sbjct: 224 QLGDGTTNDSTT--------PVTVSVAPGTTVTDIAAGRVHSLAITSAGTALGWGRNGSG 275

Query: 163 PPGD----IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
             GD           V          +A G  H+LA+   G   A G+N YGQLG G   
Sbjct: 276 QLGDGTTNDSTTPTTVSPPTGTVFTTVAAGEDHSLAVTSAGTALAAGDNLYGQLGDGTNT 335

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
             +  + V      T+  IA G +H+  +T  G    WG    G+L  GD   +++  PQ
Sbjct: 336 SSNTFVTVSLPPSTTITAIAVGRFHNLGVTATGAALAWGINIDGQL--GDGTTTNRNTPQ 393

Query: 279 KVNLLAGEDIVQVSCGGTHSVAL 301
            V+L        V+ G  HS+AL
Sbjct: 394 AVDLPVS---TTVAGGFGHSLAL 413



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 14/116 (12%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            V  WG    G+LG G    S   +P  V+L  G  +  ++ G  HS+ALT  G + ++G
Sbjct: 57  TVLAWGDNLFGQLGDGTGADSDTPIP--VSLPPGTTVTAIAAGDEHSLALTSTGTVLAWG 114

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           R   G+L  G +  T +   V +++P     G  V        +A G  H+LAI  
Sbjct: 115 RNRFGQL--GDETNTSRSTPVTVSLP----PGTTV------TAIAAGRSHSLAITS 158


>gi|357137056|ref|XP_003570117.1| PREDICTED: uncharacterized protein LOC100825305 isoform 2
           [Brachypodium distachyon]
          Length = 940

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 138/299 (46%), Gaps = 45/299 (15%)

Query: 52  AICDDGKTKTENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
           ++ DD  T   N+  P  +N+     +   + G  H   V  QG  ++WG          
Sbjct: 179 SVLDDRDTSKANVSLPRLLNSTQILDVQNVSCGEKHAAIVTKQGEVFSWG---------- 228

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ-- 160
              K+D GR+  +  V      PK+I       V+ +A G  H+  L   G ++ WG+  
Sbjct: 229 ---KEDGGRLGHK--VSVGVLHPKIIESLAFTHVKAIAFGAKHTCALAISGELFEWGEGT 283

Query: 161 ----PWPPGDIKQISVPVRVQG-LEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLG 213
                W     +    P ++ G LE V ++  A G +H   +   G L+ +G+  +G LG
Sbjct: 284 HSLGVWDDQCQRSQWYPHKLFGPLEGVSVVKMACGQWHTAIISSSGQLFTYGDGTFGVLG 343

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD----------DGEVYGWGRGEHGR 263
            GDT   ++P  V+ L GL +  +A G WH+ A+ +           G+++ WG  + G+
Sbjct: 344 HGDTSSVARPKEVESLKGLRVKAVACGPWHTAAIVEILGTVKSNAPSGKLFTWGDADRGK 403

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           LG   +DK SK+VP  V  L   D  QVSC    +VALT  G +F+ G  +HG+LG  R
Sbjct: 404 LG--HSDKESKLVPTCVKALTDSDFAQVSCAKALTVALTITGVVFTIGSKEHGQLGSHR 460



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 140/326 (42%), Gaps = 53/326 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG------QCGEEPERKDDTGR 118
           P  + +L+ T +   A G  H  A+   G  + WG   +       QC            
Sbjct: 246 PKIIESLAFTHVKAIAFGAKHTCALAISGELFEWGEGTHSLGVWDDQC------------ 293

Query: 119 ILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
             +R    P +    L    V ++A G  H+ +++  G ++T+G         GD   ++
Sbjct: 294 --QRSQWYPHKLFGPLEGVSVVKMACGQWHTAIISSSGQLFTYGDGTFGVLGHGDTSSVA 351

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQE----------DGALWAWGNNEYGQLGTGDTQP 219
            P  V+ L+  +VK +A G +H  A+ E           G L+ WG+ + G+LG  D + 
Sbjct: 352 RPKEVESLKGLRVKAVACGPWHTAAIVEILGTVKSNAPSGKLFTWGDADRGKLGHSDKES 411

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           +  P  V+ L+      ++     + ALT  G V+  G  EHG+LG    D SS  +   
Sbjct: 412 KLVPTCVKALTDSDFAQVSCAKALTVALTITGVVFTIGSKEHGQLGSHRLDDSS--ICSV 469

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
              L  E + ++S G +H   LT +G +F++G+G  G+LG G  V    P  V       
Sbjct: 470 EGPLKTEFVREISSGSSHVAVLTMNGKVFTWGKGTEGQLGLGNYVDRSSPTLV------- 522

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
               + ++ + +   +ACG   T+A+
Sbjct: 523 ----EALEDKQVDS-IACGSNFTVAV 543



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V+ ++ G  H   + + G +++WG  + G+LG   +     P  ++ L+   +  IA G 
Sbjct: 205 VQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGHKVSVGVLHPKIIESLAFTHVKAIAFGA 264

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NLLAGEDIVQVSCGGTHSVA 300
            H+ AL   GE++ WG G H    + D  + S+  P K+   L G  +V+++CG  H+  
Sbjct: 265 KHTCALAISGELFEWGEGTHSLGVWDDQCQRSQWYPHKLFGPLEGVSVVKMACGQWHTAI 324

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           ++  G +F++G G  G LG+G   +  +P EV  ++   R            K VACG  
Sbjct: 325 ISSSGQLFTYGDGTFGVLGHGDTSSVARPKEVE-SLKGLR-----------VKAVACGPW 372

Query: 361 HTLAIVE 367
           HT AIVE
Sbjct: 373 HTAAIVE 379



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            N +  L   DT      I  QG++ +  +  + G   +       +++ WG      L 
Sbjct: 129 KNSFQDLTVADT------IKEQGITQMPKLKPSEGSHVAYGTDSLKDIFVWGDVLGSVLD 182

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             D  K++  +P+ +N     D+  VSCG  H+  +T+ G +FS+G+ D GRLG+  KV+
Sbjct: 183 DRDTSKANVSLPRLLNSTQILDVQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGH--KVS 240

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G      I   A  +           K +A G +HT A+
Sbjct: 241 VGVLHPKIIESLAFTH----------VKAIAFGAKHTCAL 270



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           +  WG G +GQLG+GN  +R    +V+ALE  +V S+  GS  ++A+C
Sbjct: 497 VFTWGKGTEGQLGLGNYVDRSSPTLVEALEDKQVDSIACGSNFTVAVC 544


>gi|345325025|ref|XP_001513851.2| PREDICTED: RCC1 and BTB domain-containing protein 1
           [Ornithorhynchus anatinus]
          Length = 531

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 26/233 (11%)

Query: 142 GGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLA 194
            G H ++ T +G V+ WG         G   Q   P+++     ++QV  +A G+ H++A
Sbjct: 83  SGPHVLLSTEDGIVYAWGHNGYSQLGNGTTNQGIAPIQICTNLMIKQVTEVACGSHHSMA 142

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL---VDIAAGGWHSTALTDDG 251
           L +DG ++AWG N  GQ+G+G T   +QP P +  + L +   V IA G   S A+ D+G
Sbjct: 143 LADDGEVYAWGYNNCGQVGSGSTA--NQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNG 200

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           EVYGWG   +G+LG G+N   +++ P +V  L    ++Q+ CG  H++ALT +G ++++G
Sbjct: 201 EVYGWGYNGNGQLGLGNN--GNQLTPCRVAALHSVCVLQIVCGYAHTLALTDEGLLYAWG 258

Query: 312 RGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
              +G+LG G K     P ++             V++  + ++ AC   HT A
Sbjct: 259 ANTYGQLGTGNKSNLLSPAQIM------------VEKERVVEIAACHSAHTSA 299



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 20/266 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++  LS  KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTIVPKKLELLSGKKIKSLSYGSGPHVLLSTEDGIVYAWGHNGYSQLGNGTTNQGI 116

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
               +  +++I Q       V +VA G  HS+ L  +G V+ WG         G      
Sbjct: 117 APIQICTNLMIKQ-------VTEVACGSHHSMALADDGEVYAWGYNNCGQVGSGSTANQP 169

Query: 172 VPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P +V     +K    IA G   ++A+ ++G ++ WG N  GQLG G+   +  P  V  
Sbjct: 170 TPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPCRVAA 229

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
           L  + ++ I  G  H+ ALTD+G +Y WG   +G+LG G  +KS+ + P ++ ++  E +
Sbjct: 230 LHSVCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNLLSPAQI-MVEKERV 286

Query: 289 VQV-SCGGTH-SVALTRDGHIFSFGR 312
           V++ +C   H S A T+ GH++ +G+
Sbjct: 287 VEIAACHSAHTSAAKTQGGHVYMWGQ 312



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P  +  + +  +    A   + +     ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQEIASIRKACVFGTSANEAIYVTHSDEVFVFGVNCSNCLGTGDNQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ LSG  +  ++ G G H    T+DG VY WG   + +LG G  ++    +    
Sbjct: 64  VPKKLELLSGKKIKSLSYGSGPHVLLSTEDGIVYAWGHNGYSQLGNGTTNQGIAPIQICT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NL+  + + +V+CG  HS+AL  DG ++++G  + G++G G             N P PR
Sbjct: 124 NLMI-KQVTEVACGSHHSMALADDGEVYAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KVTNCLHIKRVVS-IACGQTSSMAVLD 198



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 36/183 (19%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDD 56
           +A    + AWG    GQ+G G+       R+   V   L   +V S+  G  +S+A+ D+
Sbjct: 143 LADDGEVYAWGYNNCGQVGSGSTANQPTPRK---VTNCLHIKRVVSIACGQTSSMAVLDN 199

Query: 57  GKTK----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G+                   +  P +V AL +  ++Q   G  H LA+ D+G  YAWG 
Sbjct: 200 GEVYGWGYNGNGQLGLGNNGNQLTPCRVAALHSVCVLQIVCGYAHTLALTDEGLLYAWGA 259

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTH-SVVLTREGHVWT 157
           N YGQ G        TG   + +++ P +     + +V   A    H S   T+ GHV+ 
Sbjct: 260 NTYGQLG--------TGN--KSNLLSPAQIMVEKERVVEIAACHSAHTSAAKTQGGHVYM 309

Query: 158 WGQ 160
           WGQ
Sbjct: 310 WGQ 312


>gi|62898714|dbj|BAD97211.1| retinitis pigmentosa GTPase regulator variant [Homo sapiens]
          Length = 815

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  +    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                     L+   ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P      
Sbjct: 174 ----------LKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
            P   +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G     
Sbjct: 224 LPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P  
Sbjct: 283 TSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTL 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            +      +  V+CGG H V  
Sbjct: 343 CSNFLRFIVKLVACGGCHMVVF 364



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y +G 
Sbjct: 12  GAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLYMFGS 61

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
              G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  + G+L
Sbjct: 62  NNWGQLGLGSKSAISK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQL 119

Query: 319 GYG 321
           G G
Sbjct: 120 GLG 122


>gi|348534545|ref|XP_003454762.1| PREDICTED: hypothetical protein LOC100691941 [Oreochromis
           niloticus]
          Length = 1536

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 134/279 (48%), Gaps = 18/279 (6%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDD 115
           G   T N P+ V AL + K+   A G  H L    +G+ YA GGN  GQ G  + E +  
Sbjct: 71  GSKVTVNKPTCVKALKSEKVQLVACGRNHTLICTAKGKVYASGGNSEGQLGLGDCEERTS 130

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQIS 171
             R+   D   P        ++ +AAG   S  LT  G ++ WG         G   Q+S
Sbjct: 131 FKRLDFFDSQGP--------IKMLAAGSNTSAALTVSGKLFMWGDNTEGQIGLGKESQVS 182

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            P  V   + +  ++ G +H+  +  DGAL+ +G  + G+LG G  Q     +P Q +  
Sbjct: 183 SPQEVSVGQPISWVSCGYYHSALVTVDGALYTFGERDSGKLGLGTHQLPGHRVP-QLVKS 241

Query: 232 LT--LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
           +   +  +A GG H+ AL + G VY +G G+ G+LG G     S+ VP+ V         
Sbjct: 242 IKEPVRQVACGGGHTVALAE-GNVYTFGLGQFGQLGHGTFIFESR-VPRLVEHFKKGRAC 299

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
           QV CG  H+  +T DG +++FG G HG+LG G +  T Q
Sbjct: 300 QVVCGENHTAVITEDGLLYTFGDGRHGKLGLGEENFTNQ 338



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 155/328 (47%), Gaps = 40/328 (12%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  +NIPS+   L N   ++ A G  H   + + G+ + +G N +GQ G   
Sbjct: 14  AVFTFGKSKFADNIPSKF-WLKNDIPLRIACGDEHTALITENGKLFMFGSNNWGQLG--- 69

Query: 111 ERKDDTGRILRRDIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWGQPWP--- 163
                    L   + + +    K +    V+ VA G  H+++ T +G V+  G       
Sbjct: 70  ---------LGSKVTVNKPTCVKALKSEKVQLVACGRNHTLICTAKGKVYASGGNSEGQL 120

Query: 164 -PGDIKQISVPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             GD ++ +   R+   +    +K++A G+  + AL   G L+ WG+N  GQ+G G    
Sbjct: 121 GLGDCEERTSFKRLDFFDSQGPIKMLAAGSNTSAALTVSGKLFMWGDNTEGQIGLGKESQ 180

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S P  V    G  +  ++ G +HS  +T DG +Y +G  + G+LG G +      VPQ 
Sbjct: 181 VSSPQEVS--VGQPISWVSCGYYHSALVTVDGALYTFGERDSGKLGLGTHQLPGHRVPQL 238

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           V  +  E + QV+CGG H+VAL  +G++++FG G  G+LG+G  +   +          P
Sbjct: 239 VKSIK-EPVRQVACGGGHTVALA-EGNVYTFGLGQFGQLGHGTFIFESR---------VP 287

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           R       ++  A  V CG  HT  I E
Sbjct: 288 RLVEHF--KKGRACQVVCGENHTAVITE 313



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 137/326 (42%), Gaps = 44/326 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE--NI 64
           +  +GS   GQLG+G+         VKAL+  KV+ V  G  ++L     GK      N 
Sbjct: 57  LFMFGSNNWGQLGLGSKVTVNKPTCVKALKSEKVQLVACGRNHTLICTAKGKVYASGGNS 116

Query: 65  PSQVNA---------------LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
             Q+                  S   I   A G     A+   G+ + WG N  GQ G  
Sbjct: 117 EGQLGLGDCEERTSFKRLDFFDSQGPIKMLAAGSNTSAALTVSGKLFMWGDNTEGQIGLG 176

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP-------- 161
            E +          +  PQ  +    +  V+ G  HS ++T +G ++T+G+         
Sbjct: 177 KESQ----------VSSPQEVSVGQPISWVSCGYYHSALVTVDGALYTFGERDSGKLGLG 226

Query: 162 --WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
               PG      VP  V+ + E V+ +A G  H +AL E G ++ +G  ++GQLG G   
Sbjct: 227 THQLPGH----RVPQLVKSIKEPVRQVACGGGHTVALAE-GNVYTFGLGQFGQLGHGTFI 281

Query: 219 PRSQ-PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             S+ P  V+         +  G  H+  +T+DG +Y +G G HG+LG G+ + +++  P
Sbjct: 282 FESRVPRLVEHFKKGRACQVVCGENHTAVITEDGLLYTFGDGRHGKLGLGEENFTNQFKP 341

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTR 303
                    ++    CGG H V L R
Sbjct: 342 TLCLRFLKYNVQGAMCGGCHMVVLAR 367



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 24/117 (20%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + + G V+ +G+ +     F DN      +P K   L  +  ++++CG  H+  +T +G 
Sbjct: 9   IPESGAVFTFGKSK-----FADN------IPSKF-WLKNDIPLRIACGDEHTALITENGK 56

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
           +F FG  + G+LG G KVT  +P  V               +    +LVACG  HTL
Sbjct: 57  LFMFGSNNWGQLGLGSKVTVNKPTCV------------KALKSEKVQLVACGRNHTL 101


>gi|211926988|dbj|BAG82722.1| hypothetical protein [uncultured bacterium]
          Length = 782

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 153/350 (43%), Gaps = 41/350 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT---- 61
           +++ WG+   GQLG G N++      V  LE   V ++ AG  ++ A+ D G  K     
Sbjct: 121 AVLCWGNNFYGQLGDGTNDDSPSPVAVVGLES-GVAAISAGGSHTCALTDGGAVKCWGDN 179

Query: 62  ------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                        N P  V+ L+ + +   + GG H  A+ D G    WG N  GQ G+ 
Sbjct: 180 SAGAVGDGTGDDRNSPVDVDGLT-SGVAAISSGGGHTCALTDAGGLKCWGWNFRGQLGDN 238

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPG 165
            E       I R   V          V  V++G  H+  L  EG V  WG+        G
Sbjct: 239 SE-------ISRSSPV--DVAGLSTGVTAVSSGAQHTCALLEEGGVQCWGRNAENQLGDG 289

Query: 166 DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
                 VPV   G E    I  G FH      DG +  WG NE GQLG   T     P+ 
Sbjct: 290 TENGSLVPVDADGTEDAAGIHAGGFHTCITNADGGIQCWGWNEDGQLGDDSTTDAGAPVD 349

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V GL+   + +++ G  HS A  +DG +  WG    G+L  GDN   S++ P  V++L G
Sbjct: 350 VVGLAS-GVDEVSLGEEHSCARIEDG-IQCWGNNNRGQL--GDNTDDSRLTP--VDVLQG 403

Query: 286 EDIV----QVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            D++     +  G THS A+T  G I  +G  D G+LG G  VT+   +E
Sbjct: 404 GDVLAGISALGAGSTHSCAVTNSGGILCWGGNDFGQLGDGSTVTSTVAVE 453



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/294 (33%), Positives = 133/294 (45%), Gaps = 29/294 (9%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           RNS     +G T    +P  V  LS+   V A+  G+H  A  + G    WG N YGQ G
Sbjct: 77  RNSSGQLGNGSTADSALPITVPGLSDVVAVSAS--GFHTCARTEAGAVLCWGNNFYGQLG 134

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPWP- 163
           +     DD+          P   A   +   V  ++AGG+H+  LT  G V  WG     
Sbjct: 135 DG--TNDDS----------PSPVAVVGLESGVAAISAGGSHTCALTDGGAVKCWGDNSAG 182

Query: 164 ---PGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
               G     + PV V GL   V  I+ G  H  AL + G L  WG N  GQLG      
Sbjct: 183 AVGDGTGDDRNSPVDVDGLTSGVAAISSGGGHTCALTDAGGLKCWGWNFRGQLGDNSEIS 242

Query: 220 RSQPIPVQGLS-GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278
           RS P+ V GLS G+T V  ++G  H+ AL ++G V  WGR    +LG  D  ++  +VP 
Sbjct: 243 RSSPVDVAGLSTGVTAV--SSGAQHTCALLEEGGVQCWGRNAENQLG--DGTENGSLVP- 297

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            V+    ED   +  GG H+     DG I  +G  + G+LG       G P++V
Sbjct: 298 -VDADGTEDAAGIHAGGFHTCITNADGGIQCWGWNEDGQLGDDSTTDAGAPVDV 350



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 114/241 (47%), Gaps = 23/241 (9%)

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
           P   +   +AG  H+  +T +G V  WG+        G     ++P+ V GL  V  ++ 
Sbjct: 49  PLTDIATFSAGEQHTCAVTSDGRVQCWGRNSSGQLGNGSTADSALPITVPGLSDVVAVSA 108

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTA 246
             FH  A  E GA+  WGNN YGQLG G       P+ V GL SG+    I+AGG H+ A
Sbjct: 109 SGFHTCARTEAGAVLCWGNNFYGQLGDGTNDDSPSPVAVVGLESGVAA--ISAGGSHTCA 166

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           LTD G V  WG    G +G G  D   +  P  V+ L    +  +S GG H+ ALT  G 
Sbjct: 167 LTDGGAVKCWGDNSAGAVGDGTGDD--RNSPVDVDGLT-SGVAAISSGGGHTCALTDAGG 223

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +  +G    G+LG   +++   P++V     A  + G           V+ G +HT A++
Sbjct: 224 LKCWGWNFRGQLGDNSEISRSSPVDV-----AGLSTG--------VTAVSSGAQHTCALL 270

Query: 367 E 367
           E
Sbjct: 271 E 271



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 120/272 (44%), Gaps = 19/272 (6%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V     T I   + G  H  AV   GR   WG N  GQ G               D 
Sbjct: 42  PASVGVDPLTDIATFSAGEQHTCAVTSDGRVQCWGRNSSGQLGNGS----------TADS 91

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW----PPGDIKQISVPVRVQGLE 180
            +P        V  V+A G H+   T  G V  WG  +      G       PV V GLE
Sbjct: 92  ALPITVPGLSDVVAVSASGFHTCARTEAGAVLCWGNNFYGQLGDGTNDDSPSPVAVVGLE 151

Query: 181 Q-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
             V  I+ G  H  AL + GA+  WG+N  G +G G    R+ P+ V GL+   +  I++
Sbjct: 152 SGVAAISAGGSHTCALTDGGAVKCWGDNSAGAVGDGTGDDRNSPVDVDGLTS-GVAAISS 210

Query: 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
           GG H+ ALTD G +  WG    G+L  GDN + S+  P  V  L+   +  VS G  H+ 
Sbjct: 211 GGGHTCALTDAGGLKCWGWNFRGQL--GDNSEISRSSPVDVAGLS-TGVTAVSSGAQHTC 267

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           AL  +G +  +GR    +LG G +  +  P++
Sbjct: 268 ALLEEGGVQCWGRNAENQLGDGTENGSLVPVD 299



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 146/338 (43%), Gaps = 41/338 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVV----AGSRNSLAICD------- 55
           I  WG+   GQLG   ++ R  +  V  L+   V + +    AGS +S A+ +       
Sbjct: 375 IQCWGNNNRGQLGDNTDDSR--LTPVDVLQGGDVLAGISALGAGSTHSCAVTNSGGILCW 432

Query: 56  ---------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
                    DG T T  +  + + L+ + I     G  H  A+ D G    WG N  GQ 
Sbjct: 433 GGNDFGQLGDGSTVTSTVAVEHSTLT-SGIAAVGAGEDHTCALTDGGGVKCWGRNSQGQL 491

Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
           G         G+++     +      +  V  +  GG HS VL   G +  WG       
Sbjct: 492 GN--------GKLVNSSEPVDALLLSQG-VSSLTTGGNHSCVLLDTGGIRCWGANGTGQL 542

Query: 163 PPGDIKQISVPVRVQGLEQ-VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
             G     +V   V GL   V  ++ G+ H  A+   GA+  WG N YGQ+G G T  R+
Sbjct: 543 GNGSRSASTVAQSVTGLTSGVINVSAGSSHTCAVTSSGAVKCWGWNFYGQVGDGSTDFRT 602

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P+ V    G     + AG WH+ A+ DDG V  WG   +G+LG G  D S   V   VN
Sbjct: 603 EPVDVV-GLGAGAAAVVAGRWHTCAIMDDGRVKCWGYNVYGQLGDGTEDDSPTPV-DVVN 660

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           L +   + QV+ G +H+ ALT    I  +G    GRLG
Sbjct: 661 LPSA--VTQVTVGDSHTCALTESDGILCWGLSSSGRLG 696



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 20/195 (10%)

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           V V  L  +   + G  H  A+  DG +  WG N  GQLG G T   + PI V GLS   
Sbjct: 45  VGVDPLTDIATFSAGEQHTCAVTSDGRVQCWGRNSSGQLGNGSTADSALPITVPGLS--D 102

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED-IVQVS 292
           +V ++A G+H+ A T+ G V  WG   +G+LG G ND S    P  V ++  E  +  +S
Sbjct: 103 VVAVSASGFHTCARTEAGAVLCWGNNFYGQLGDGTNDDS----PSPVAVVGLESGVAAIS 158

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
            GG+H+ ALT  G +  +G    G +G G    TG     P+++       DG+     A
Sbjct: 159 AGGSHTCALTDGGAVKCWGDNSAGAVGDG----TGDDRNSPVDV-------DGLTSGVAA 207

Query: 353 KLVACGGRHTLAIVE 367
             ++ GG HT A+ +
Sbjct: 208 --ISSGGGHTCALTD 220



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 99/245 (40%), Gaps = 32/245 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +  T  I  WG+   GQLG G+         V  L    V +V AGS ++ A+   G  K
Sbjct: 525 LLDTGGIRCWGANGTGQLGNGSRSASTVAQSVTGLTS-GVINVSAGSSHTCAVTSSGAVK 583

Query: 61  TE--NIPSQVNALSN---TKIVQAAIGG----------WHCLAVDDQGRAYAWGGNEYGQ 105
               N   QV   S    T+ V     G          WH  A+ D GR   WG N YGQ
Sbjct: 584 CWGWNFYGQVGDGSTDFRTEPVDVVGLGAGAAAVVAGRWHTCAIMDDGRVKCWGYNVYGQ 643

Query: 106 CGEEPERKDDTGRILRRDIV-IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
            G+  E    T      D+V +P        V QV  G +H+  LT    +  WG     
Sbjct: 644 LGDGTEDDSPT----PVDVVNLPSA------VTQVTVGDSHTCALTESDGILCWGLS-SS 692

Query: 165 GDIKQISVP--VRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           G +     P    V GL   V  IA G  H  AL   G +  WG+NE+ Q+G G+   R 
Sbjct: 693 GRLGGDPDPDFAAVVGLGTGVTQIAGGDDHTCALIG-GNVRCWGDNEFSQIGDGNVADRD 751

Query: 222 QPIPV 226
           +P PV
Sbjct: 752 EPAPV 756



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 270 DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           D +  + P  V +    DI   S G  H+ A+T DG +  +GR   G+LG G    +  P
Sbjct: 35  DGAPYLSPASVGVDPLTDIATFSAGEQHTCAVTSDGRVQCWGRNSSGQLGNGSTADSALP 94

Query: 330 MEVP 333
           + VP
Sbjct: 95  ITVP 98


>gi|440801355|gb|ELR22375.1| regulator of chromosome condensation, RCC1, putative [Acanthamoeba
           castellanii str. Neff]
          Length = 395

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 155/334 (46%), Gaps = 46/334 (13%)

Query: 63  NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           ++ + + AL   ++V  + GG H L + ++GR +++G   +G+ G   E           
Sbjct: 26  SVLTPIRALEAHRVVAVSAGGHHSLVLTEEGRVFSFGNGLHGRLGHGNEET--------- 76

Query: 123 DIVIPQRCA---PKLIVRQVAAGGTHSVVLTREGHVWTWG-------------QPWPPGD 166
               P+R A       V +++AG THS+ LT++G  +++G                 P +
Sbjct: 77  -CFEPRRIAFFDTTAGVAKISAGTTHSLALTKDGKAYSFGFGMFGRLGHGDETDQLLPRE 135

Query: 167 IKQ----ISVPV--RVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
           I       S PV  RV+  E    ++ +A G FH+L L  DG ++++G    G LG GD 
Sbjct: 136 ITLRGHGASPPVGDRVEENETDPVIEHVAAGYFHSLLLTTDGRVYSFGAGVMGALGHGDR 195

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
             R +P  ++ L+   +V +A G  ++  L D+G V+ +G        F +      ++P
Sbjct: 196 DKRLRPTMIEALADRRIVSMACGSANTLVLDDEGRVFFFGLDYSEFPKFTEGQARFVLLP 255

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             + L   E+I +V  G  H + LTR+G + +FG G +GRLG G +     P  V     
Sbjct: 256 SALGL--AEEITEVRAGEGHCLLLTREGKLLAFGLGKNGRLGLGDETNRLAPTAVTF--- 310

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
            P N    V+       +ACG +H LA+V+   E
Sbjct: 311 -PSNGTTSVEID-----IACGAKHGLALVDVPGE 338



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 190/405 (46%), Gaps = 59/405 (14%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCV-VKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           +++ G G+ G LG G+   +  V   ++ALE ++V +V AG  +SL + ++G+       
Sbjct: 5   VLSAGGGQHGSLGQGDAVTQLSVLTPIRALEAHRVVAVSAGGHHSLVLTEEGRVFSFGNG 64

Query: 60  ----------KTENIPSQVNALSNTK-IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     +T   P ++     T  + + + G  H LA+   G+AY++G   +G+ G 
Sbjct: 65  LHGRLGHGNEETCFEPRRIAFFDTTAGVAKISAGTTHSLALTKDGKAYSFGFGMFGRLGH 124

Query: 109 EPERKDDTGRILRRDIVIP-QRCAPKL-----------IVRQVAAGGTHSVVLTREGHVW 156
                D+T ++L R+I +     +P +           ++  VAAG  HS++LT +G V+
Sbjct: 125 ----GDETDQLLPREITLRGHGASPPVGDRVEENETDPVIEHVAAGYFHSLLLTTDGRVY 180

Query: 157 TWGQ----PWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWG--NNE 208
           ++G         GD  +   P  ++ L   +++  A G+ + L L ++G ++ +G   +E
Sbjct: 181 SFGAGVMGALGHGDRDKRLRPTMIEALADRRIVSMACGSANTLVLDDEGRVFFFGLDYSE 240

Query: 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGD 268
           + +   G  Q R   +P        + ++ AG  H   LT +G++  +G G++GRLG GD
Sbjct: 241 FPKFTEG--QARFVLLPSALGLAEEITEVRAGEGHCLLLTREGKLLAFGLGKNGRLGLGD 298

Query: 269 NDKSSKMVPQKVNLLAGEDI---VQVSCGGTHSVALT----RDGHIFSFGRGDHGRLGYG 321
             +++++ P  V   +       + ++CG  H +AL         +++FG GD G+L  G
Sbjct: 299 --ETNRLAPTAVTFPSNGTTSVEIDIACGAKHGLALVDVPGEGPRLYAFGSGDQGQLANG 356

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            +     P     ++PA       + +  +   ++ G  H+L ++
Sbjct: 357 HRQDRASPTATTTSLPAL------LHQHIVPAAISAGKAHSLVLL 395



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 251 GEVYGWGRGEHGRLGFGDN-DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309
           G V   G G+HG LG GD   + S + P  +  L    +V VS GG HS+ LT +G +FS
Sbjct: 3   GVVLSAGGGQHGSLGQGDAVTQLSVLTP--IRALEAHRVVAVSAGGHHSLVLTEEGRVFS 60

Query: 310 FGRGDHGRLGYGRKVTTGQPMEVPI 334
           FG G HGRLG+G + T  +P  +  
Sbjct: 61  FGNGLHGRLGHGNEETCFEPRRIAF 85


>gi|357137054|ref|XP_003570116.1| PREDICTED: uncharacterized protein LOC100825305 isoform 1
           [Brachypodium distachyon]
          Length = 1005

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 137/299 (45%), Gaps = 45/299 (15%)

Query: 52  AICDDGKTKTENI--PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
           ++ DD  T   N+  P  +N+     +   + G  H   V  QG  ++WG  + G+ G  
Sbjct: 244 SVLDDRDTSKANVSLPRLLNSTQILDVQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGH- 302

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ-- 160
              K   G +            PK+I       V+ +A G  H+  L   G ++ WG+  
Sbjct: 303 ---KVSVGVL-----------HPKIIESLAFTHVKAIAFGAKHTCALAISGELFEWGEGT 348

Query: 161 ----PWPPGDIKQISVPVRVQG-LEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLG 213
                W     +    P ++ G LE V ++  A G +H   +   G L+ +G+  +G LG
Sbjct: 349 HSLGVWDDQCQRSQWYPHKLFGPLEGVSVVKMACGQWHTAIISSSGQLFTYGDGTFGVLG 408

Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD----------DGEVYGWGRGEHGR 263
            GDT   ++P  V+ L GL +  +A G WH+ A+ +           G+++ WG  + G+
Sbjct: 409 HGDTSSVARPKEVESLKGLRVKAVACGPWHTAAIVEILGTVKSNAPSGKLFTWGDADRGK 468

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           LG   +DK SK+VP  V  L   D  QVSC    +VALT  G +F+ G  +HG+LG  R
Sbjct: 469 LG--HSDKESKLVPTCVKALTDSDFAQVSCAKALTVALTITGVVFTIGSKEHGQLGSHR 525



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 140/326 (42%), Gaps = 53/326 (16%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG------QCGEEPERKDDTGR 118
           P  + +L+ T +   A G  H  A+   G  + WG   +       QC            
Sbjct: 311 PKIIESLAFTHVKAIAFGAKHTCALAISGELFEWGEGTHSLGVWDDQC------------ 358

Query: 119 ILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
             +R    P +    L    V ++A G  H+ +++  G ++T+G         GD   ++
Sbjct: 359 --QRSQWYPHKLFGPLEGVSVVKMACGQWHTAIISSSGQLFTYGDGTFGVLGHGDTSSVA 416

Query: 172 VPVRVQGLE--QVKLIAVGAFHNLALQE----------DGALWAWGNNEYGQLGTGDTQP 219
            P  V+ L+  +VK +A G +H  A+ E           G L+ WG+ + G+LG  D + 
Sbjct: 417 RPKEVESLKGLRVKAVACGPWHTAAIVEILGTVKSNAPSGKLFTWGDADRGKLGHSDKES 476

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
           +  P  V+ L+      ++     + ALT  G V+  G  EHG+LG    D SS  +   
Sbjct: 477 KLVPTCVKALTDSDFAQVSCAKALTVALTITGVVFTIGSKEHGQLGSHRLDDSS--ICSV 534

Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
              L  E + ++S G +H   LT +G +F++G+G  G+LG G  V    P  V       
Sbjct: 535 EGPLKTEFVREISSGSSHVAVLTMNGKVFTWGKGTEGQLGLGNYVDRSSPTLV------- 587

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAI 365
               + ++ + +   +ACG   T+A+
Sbjct: 588 ----EALEDKQVDS-IACGSNFTVAV 608



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
           V+ ++ G  H   + + G +++WG  + G+LG   +     P  ++ L+   +  IA G 
Sbjct: 270 VQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGHKVSVGVLHPKIIESLAFTHVKAIAFGA 329

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV-NLLAGEDIVQVSCGGTHSVA 300
            H+ AL   GE++ WG G H    + D  + S+  P K+   L G  +V+++CG  H+  
Sbjct: 330 KHTCALAISGELFEWGEGTHSLGVWDDQCQRSQWYPHKLFGPLEGVSVVKMACGQWHTAI 389

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGR 360
           ++  G +F++G G  G LG+G   +  +P EV  ++   R            K VACG  
Sbjct: 390 ISSSGQLFTYGDGTFGVLGHGDTSSVARPKEVE-SLKGLR-----------VKAVACGPW 437

Query: 361 HTLAIVE 367
           HT AIVE
Sbjct: 438 HTAAIVE 444



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            N +  L   DT      I  QG++ +  +  + G   +       +++ WG      L 
Sbjct: 194 KNSFQDLTVADT------IKEQGITQMPKLKPSEGSHVAYGTDSLKDIFVWGDVLGSVLD 247

Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
             D  K++  +P+ +N     D+  VSCG  H+  +T+ G +FS+G+ D GRLG+  KV+
Sbjct: 248 DRDTSKANVSLPRLLNSTQILDVQNVSCGEKHAAIVTKQGEVFSWGKEDGGRLGH--KVS 305

Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
            G      I   A  +           K +A G +HT A+
Sbjct: 306 VGVLHPKIIESLAFTH----------VKAIAFGAKHTCAL 335



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           +  WG G +GQLG+GN  +R    +V+ALE  +V S+  GS  ++A+C
Sbjct: 562 VFTWGKGTEGQLGLGNYVDRSSPTLVEALEDKQVDSIACGSNFTVAVC 609


>gi|18073943|emb|CAC86116.1| retinitis pigmentosa GTPase regulator [Homo sapiens]
          Length = 815

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 146/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V    
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGN 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  +    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGNPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 135/286 (47%), Gaps = 44/286 (15%)

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D G  + +G +++ +        ++ G+   + D+ +   C           G  HS V+
Sbjct: 10  DSGAVFTFGKSKFAE--------NNPGKFWFKNDVPVHLSC-----------GDEHSAVV 50

Query: 150 TREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALW 202
           T    ++      WGQ    G    IS P  V+ L  E+VKL A G  H L   E G ++
Sbjct: 51  TGNNKLYMFGSNNWGQ-LGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVY 109

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+DG ++ WG    
Sbjct: 110 ATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSE 169

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G++G    + S+  VPQ+V +  G  +  +SCG  HS  +T DG ++ FG  ++G+LG  
Sbjct: 170 GQIGL--KNVSNVCVPQQVTI--GNPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGL- 224

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  P ++  N   P+   + +  + I   VACGG HT+ + E
Sbjct: 225 -------PNQLLGNHRTPQLVSE-IPEKVIQ--VACGGEHTVVLTE 260



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                     L+   ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P      
Sbjct: 174 ----------LKNVSNVCVPQQVTIGNPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
            P   +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G     
Sbjct: 224 LPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P  
Sbjct: 283 TSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTL 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            +      +  V+CGG H V  
Sbjct: 343 CSNFLRFIVKLVACGGCHMVVF 364



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAISK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 24/121 (19%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D G V+ +G+ +     F +N+      P K      +  V +SCG  HS  +T +  
Sbjct: 8   MPDSGAVFTFGKSK-----FAENN------PGKF-WFKNDVPVHLSCGDEHSAVVTGNNK 55

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++ FG  + G+LG G K    +P  V    P               KL ACG  HTL   
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEK------------VKLAACGRNHTLVST 103

Query: 367 E 367
           E
Sbjct: 104 E 104


>gi|365864194|ref|ZP_09403886.1| RCC1 repeat-containing protein [Streptomyces sp. W007]
 gi|364006418|gb|EHM27466.1| RCC1 repeat-containing protein [Streptomyces sp. W007]
          Length = 396

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 156/346 (45%), Gaps = 46/346 (13%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAG---SRNSLAICDDGKTKT- 61
           ++++WG+G  GQLG G   +      V +L    V  + AG   S +S A+    KT T 
Sbjct: 34  TVLSWGAGRTGQLGNGTTTDSLSPSSVTSLVRGDVDQISAGGTSSADSFALARTDKTVTS 93

Query: 62  ----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                           + +P+ V  L+N K +  A GG H LA+D   + Y+WG N YGQ
Sbjct: 94  WGHNSSGQLGNGGNAAQTVPTAVPRLTNIKDI--AAGGRHGLALDTSPQVYSWGDNAYGQ 151

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPG 165
            G    R  D+         +P R      V+Q++AG   S+ L   G V+ WG+     
Sbjct: 152 LGN--NRTGDS-------RTVPDRVQGMPKVKQISAGCDFSLALLENGKVYAWGRASTAS 202

Query: 166 DIKQISVPVRVQGL----EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                + P             +       H LAL  D  + +WG N YGQLG   T+   
Sbjct: 203 SATAAAPPAPSPARSPAWRTSRRSTPARHHALALTADSTVKSWGYNLYGQLGNSSTRSAV 262

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL-----GFGDN-DKSSKM 275
            P+ V  L  ++  DI AG +H+  +T D  V+GWG  ++G+L      F  N  ++++ 
Sbjct: 263 TPVDVDWLENVS--DIEAGAFHNYVITGDSAVWGWGNNQYGQLLETDEAFDQNTSRTNRT 320

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
            P ++  L  E + Q++ G  H  A+T D  +F++G    G+LG G
Sbjct: 321 APVEIPRL--EGVQQLAAGARHGAAVTAD-EVFTWGHNGEGQLGNG 363



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 21/209 (10%)

Query: 136 VRQVAAGGTHS---VVLTR-EGHVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKLIA 186
           V Q++AGGT S     L R +  V +WG     Q    G+  Q +VP  V  L  +K IA
Sbjct: 68  VDQISAGGTSSADSFALARTDKTVTSWGHNSSGQLGNGGNAAQ-TVPTAVPRLTNIKDIA 126

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLG---TGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            G  H LAL     +++WG+N YGQLG   TGD+  R+ P  VQG+    +  I+AG   
Sbjct: 127 AGGRHGLALDTSPQVYSWGDNAYGQLGNNRTGDS--RTVPDRVQGMP--KVKQISAGCDF 182

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S AL ++G+VY WGR             ++   P      A     + +    H++ALT 
Sbjct: 183 SLALLENGKVYAWGRASTASS----ATAAAPPAPSPARSPAWRTSRRSTPARHHALALTA 238

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           D  + S+G   +G+LG     +   P++V
Sbjct: 239 DSTVKSWGYNLYGQLGNSSTRSAVTPVDV 267



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 99/248 (39%), Gaps = 42/248 (16%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY-KVRSVVAGSRNSLAICDDGKTKT---E 62
           + +WG    GQLG  NN   +   V   ++   KV+ + AG   SLA+ ++GK       
Sbjct: 141 VYSWGDNAYGQLG--NNRTGDSRTVPDRVQGMPKVKQISAGCDFSLALLENGKVYAWGRA 198

Query: 63  NIPSQVNALSNTKIVQAAIGGW-----------HCLAVDDQGRAYAWGGNEYGQCGEEPE 111
           +  S   A +      A    W           H LA+       +WG N YGQ G    
Sbjct: 199 STASSATAAAPPAPSPARSPAWRTSRRSTPARHHALALTADSTVKSWGYNLYGQLGNSST 258

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI- 170
           R            V P        V  + AG  H+ V+T +  VW WG     G + +  
Sbjct: 259 RS----------AVTPVDVDWLENVSDIEAGAFHNYVITGDSAVWGWGNN-QYGQLLETD 307

Query: 171 ------------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
                       + PV +  LE V+ +A GA H  A+  D  ++ WG+N  GQLG G T 
Sbjct: 308 EAFDQNTSRTNRTAPVEIPRLEGVQQLAAGARHGAAVTAD-EVFTWGHNGEGQLGNGTTT 366

Query: 219 PRSQPIPV 226
           PR + + +
Sbjct: 367 PRYESVKI 374



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 77/174 (44%), Gaps = 21/174 (12%)

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHST---ALT-DDGEV 253
           D  + +WG    GQLG G T     P  V  L    +  I+AGG  S    AL   D  V
Sbjct: 32  DPTVLSWGAGRTGQLGNGTTTDSLSPSSVTSLVRGDVDQISAGGTSSADSFALARTDKTV 91

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
             WG    G+LG G N  +++ VP  V  L   +I  ++ GG H +AL     ++S+G  
Sbjct: 92  TSWGHNSSGQLGNGGN--AAQTVPTAVPRLT--NIKDIAAGGRHGLALDTSPQVYSWGDN 147

Query: 314 DHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
            +G+LG  R   TG    VP          D V      K ++ G   +LA++E
Sbjct: 148 AYGQLGNNR---TGDSRTVP----------DRVQGMPKVKQISAGCDFSLALLE 188


>gi|397488796|ref|XP_003815430.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Pan
           paniscus]
          Length = 815

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVIF 364



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  V    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 44/286 (15%)

Query: 91  DQGRAYAWGGNEYGQCGEEPERKDDTGRI-LRRDIVIPQRCAPKLIVRQVAAGGTHSVVL 149
           D G  + +G +++ +        ++ G+   + D+ +   C           G  HS V+
Sbjct: 10  DSGAVFTFGKSKFAE--------NNPGKFWFKNDVPVHLSC-----------GDEHSAVV 50

Query: 150 TREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALW 202
           T    ++      WGQ    G    +S P  V+ L  E+VKL A G  H L   E G ++
Sbjct: 51  TGNNKLYMFGSNNWGQ-LGLGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVY 109

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           A G N  GQLG GDT+ R+    +    S   +  ++AG   S ALT+DG ++ WG    
Sbjct: 110 ATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSE 169

Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           G++G    + S+  VPQ+V +  G+ +  +SCG  HS  +T DG ++ FG  ++G+LG  
Sbjct: 170 GQIGL--KNVSNVCVPQQVTI--GKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGL- 224

Query: 322 RKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  P ++  N   P+   + +  + I   VACGG HT+ + E
Sbjct: 225 -------PNQLLGNHRTPQLVSE-IPEKVIQ--VACGGEHTVVLTE 260



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                     L+   ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P      
Sbjct: 174 ----------LKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
            P   +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G     
Sbjct: 224 LPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P  
Sbjct: 283 TSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTL 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            +      +  V+CGG H V  
Sbjct: 343 CSNFLRFIVKLVACGGCHMVIF 364



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAVSK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 24/121 (19%)

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           + D G V+ +G+ +     F +N+      P K      +  V +SCG  HS  +T +  
Sbjct: 8   MPDSGAVFTFGKSK-----FAENN------PGKF-WFKNDVPVHLSCGDEHSAVVTGNNK 55

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           ++ FG  + G+LG G K    +P  V    P               KL ACG  HTL   
Sbjct: 56  LYMFGSNNWGQLGLGSKSAVSKPTCVKALKPEK------------VKLAACGRNHTLVST 103

Query: 367 E 367
           E
Sbjct: 104 E 104


>gi|428184654|gb|EKX53509.1| hypothetical protein GUITHDRAFT_64398, partial [Guillardia theta
           CCMP2712]
          Length = 279

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 129/277 (46%), Gaps = 29/277 (10%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G    E  P  + +L    ++Q A+G  HC A+   G+ Y+WG    G+ G    +    
Sbjct: 13  GSHANEKYPKPIKSLKEKGVIQVAVGPQHCSALCSSGQIYSWGIGLNGRLGHGNIQDSSA 72

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-------------PWP 163
            ++L       + C       Q+A G  HS  LT++G +++WG+              W 
Sbjct: 73  PKMLAS---TKKNCT----AVQIACGAAHSAYLTQDGKLYSWGRGLNGELGNGERHDQWT 125

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           P      ++ +R++ L  V  +A G     A    G L++WG+ ++G LG GD + R +P
Sbjct: 126 P------NLVLRLRDL-VVSYVACGTNTTFACTGGGLLFSWGSGKHGCLGLGDREDRLEP 178

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V+      ++ +A G  H  ALT+DG+++GWGRG  G  G G    S  + P K+ + 
Sbjct: 179 SLVRLREEDRIIRVACGEHHCLALTEDGKLWGWGRGTGGCHGLGHT--SEVLSPHKLPMP 236

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
               IV +SCG  HS  LT  G IF FG G   R  Y
Sbjct: 237 EDRTIVSMSCGRWHSAYLTIRGDIFCFGSGRGFRYLY 273



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPVRVQGLEQ---VKLIAVG 188
           V QVA G  H   L   G +++WG         G+I+  S P  +   ++      IA G
Sbjct: 32  VIQVAVGPQHCSALCSSGQIYSWGIGLNGRLGHGNIQDSSAPKMLASTKKNCTAVQIACG 91

Query: 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
           A H+  L +DG L++WG    G+LG G+   +  P  V  L  L +  +A G   + A T
Sbjct: 92  AAHSAYLTQDGKLYSWGRGLNGELGNGERHDQWTPNLVLRLRDLVVSYVACGTNTTFACT 151

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
             G ++ WG G+HG LG GD  +  ++ P  V L   + I++V+CG  H +ALT DG ++
Sbjct: 152 GGGLLFSWGSGKHGCLGLGD--REDRLEPSLVRLREEDRIIRVACGEHHCLALTEDGKLW 209

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEVPI 334
            +GRG  G  G G       P ++P+
Sbjct: 210 GWGRGTGGCHGLGHTSEVLSPHKLPM 235



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 94/196 (47%), Gaps = 15/196 (7%)

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP-IPVQGLSG 231
           P++    + V  +AVG  H  AL   G +++WG    G+LG G+ Q  S P +       
Sbjct: 23  PIKSLKEKGVIQVAVGPQHCSALCSSGQIYSWGIGLNGRLGHGNIQDSSAPKMLASTKKN 82

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
            T V IA G  HS  LT DG++Y WGRG +G LG G+  +  +  P  V  L    +  V
Sbjct: 83  CTAVQIACGAAHSAYLTQDGKLYSWGRGLNGELGNGE--RHDQWTPNLVLRLRDLVVSYV 140

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           +CG   + A T  G +FS+G G HG LG G +    +P  V +         D + R   
Sbjct: 141 ACGTNTTFACTGGGLLFSWGSGKHGCLGLGDREDRLEPSLVRLR------EEDRIIR--- 191

Query: 352 AKLVACGGRHTLAIVE 367
              VACG  H LA+ E
Sbjct: 192 ---VACGEHHCLALTE 204



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 203 AWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
           +WG      LG G       P P++ L    ++ +A G  H +AL   G++Y WG G +G
Sbjct: 1   SWGTGFNLCLGHGSHANEKYPKPIKSLKEKGVIQVAVGPQHCSALCSSGQIYSWGIGLNG 60

Query: 263 RLGFGDNDKSSK---MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           RLG G+   SS    +   K N  A    VQ++CG  HS  LT+DG ++S+GRG +G LG
Sbjct: 61  RLGHGNIQDSSAPKMLASTKKNCTA----VQIACGAAHSAYLTQDGKLYSWGRGLNGELG 116

Query: 320 YGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            G +     P  V + +           R  +   VACG   T A  
Sbjct: 117 NGERHDQWTPNLV-LRL-----------RDLVVSYVACGTNTTFACT 151



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 107/266 (40%), Gaps = 49/266 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S+  I +WG G +G+LG GN ++       K L   K                     
Sbjct: 45  LCSSGQIYSWGIGLNGRLGHGNIQDSS---APKMLASTK--------------------- 80

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                       N   VQ A G  H   +   G+ Y+WG    G+ G   ER D      
Sbjct: 81  -----------KNCTAVQIACGAAHSAYLTQDGKLYSWGRGLNGELGNG-ERHDQ----W 124

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP--V 174
             ++V+  R    L+V  VA G   +   T  G +++WG         GD +    P  V
Sbjct: 125 TPNLVLRLR---DLVVSYVACGTNTTFACTGGGLLFSWGSGKHGCLGLGDREDRLEPSLV 181

Query: 175 RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234
           R++  +++  +A G  H LAL EDG LW WG    G  G G T     P  +      T+
Sbjct: 182 RLREEDRIIRVACGEHHCLALTEDGKLWGWGRGTGGCHGLGHTSEVLSPHKLPMPEDRTI 241

Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGE 260
           V ++ G WHS  LT  G+++ +G G 
Sbjct: 242 VSMSCGRWHSAYLTIRGDIFCFGSGR 267



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG G +  LG G +  +++  P+ +  L  + ++QV+ G  H  AL   G I+S+G G +
Sbjct: 2   WGTGFNLCLGHGSH--ANEKYPKPIKSLKEKGVIQVAVGPQHCSALCSSGQIYSWGIGLN 59

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           GRLG+G    +  P  +               +   A  +ACG  H+  + +
Sbjct: 60  GRLGHGNIQDSSAPKMLA-----------STKKNCTAVQIACGAAHSAYLTQ 100


>gi|418687991|ref|ZP_13249148.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. Moskva]
 gi|418742687|ref|ZP_13299057.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Valbuzzi str. 200702274]
 gi|410737415|gb|EKQ82156.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Grippotyphosa str. Moskva]
 gi|410750062|gb|EKR07045.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           kirschneri serovar Valbuzzi str. 200702274]
          Length = 510

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 144/326 (44%), Gaps = 50/326 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+   GQLGIGNN            +P K     AG+R                P+
Sbjct: 200 VYTWGANSKGQLGIGNNNT----------DPAKASD--AGNRQP--------------PT 233

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           ++  ++N   V  A G  H L +   G   A+G N  GQ G      +          VI
Sbjct: 234 EIPGINNA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVI 291

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW---------PPGDIKQISVPVRVQ 177
             R      V QV AG  HS  LT  G V+ WG+            P +  Q SVPV+V+
Sbjct: 292 QLRN-----VIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGIVSPANTVQ-SVPVKVE 345

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           GL ++K IA G  H LAL  DG +++WG N  GQLG G     + P        L + D+
Sbjct: 346 GLPKIKQIANGRDHILALTYDGKIYSWGLNASGQLGIGGN--GNPPPTPIPTKILNIQDV 403

Query: 238 A---AGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           A   AGG  S A+  +GEV GWG  G    L  G+++      P K  ++  +++V   C
Sbjct: 404 ASIWAGGTQSFAILKNGEVKGWGANGNMASLALGESNTPKVYEPNKA-VVGIDNVVHFGC 462

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLG 319
           G TH+ AL  +G I+ +G    G LG
Sbjct: 463 GATHNFALLGNGEIYGWGWNFKGSLG 488



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 145/344 (42%), Gaps = 49/344 (14%)

Query: 48  RNSLAICDDGKTKTENIPSQVNALSNTK-IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
           RN+      G +  +NI  ++  +   + I        + +A+   GR Y WG N  GQ 
Sbjct: 152 RNNFGQLGMGISTGDNINDRIMKVDRIRDIFSIHFNQNNSIAISQSGRVYTWGANSKGQL 211

Query: 107 G-----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA-GGTHSVVLTREGHVWTWGQ 160
           G      +P +  D G   R+    P    P +    + A G  H+++L  +G V  +GQ
Sbjct: 212 GIGNNNTDPAKASDAGN--RQ----PPTEIPGINNAVMGAYGFNHALILKSDGTVVAFGQ 265

Query: 161 PWPPGDIKQI-------------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
                ++ Q+             S PV V  L  V  +  G+ H+ AL E+G ++ WG N
Sbjct: 266 ----NNVGQLGNGENNLNRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENGEVYVWGRN 321

Query: 208 EYGQLGTGDTQP----RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           +YG LG G   P    +S P+ V+GL  +    IA G  H  ALT DG++Y WG    G+
Sbjct: 322 QYGNLGNGIVSPANTVQSVPVKVEGLPKIK--QIANGRDHILALTYDGKIYSWGLNASGQ 379

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG-RGDHGRLGYGR 322
           LG G N            L   +D+  +  GGT S A+ ++G +  +G  G+   L  G 
Sbjct: 380 LGIGGNGNPPPTPIPTKILNI-QDVASIWAGGTQSFAILKNGEVKGWGANGNMASLALGE 438

Query: 323 KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
             T          +  P  A  G+D         CG  H  A++
Sbjct: 439 SNTP--------KVYEPNKAVVGIDN---VVHFGCGATHNFALL 471



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 114/250 (45%), Gaps = 30/250 (12%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150
            G  Y  G N +GQ G      D+   RI++ D +   R    +   Q      +S+ ++
Sbjct: 144 NGELYTVGRNNFGQLGMGISTGDNINDRIMKVDRI---RDIFSIHFNQ-----NNSIAIS 195

Query: 151 REGHVWTWG--------------QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQ 196
           + G V+TWG               P    D      P  + G+    + A G  H L L+
Sbjct: 196 QSGRVYTWGANSKGQLGIGNNNTDPAKASDAGNRQPPTEIPGINNAVMGAYGFNHALILK 255

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
            DG + A+G N  GQLG G+           PV  +    ++ + AG  HS ALT++GEV
Sbjct: 256 SDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENGEV 315

Query: 254 YGWGRGEHGRLGFG--DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
           Y WGR ++G LG G      + + VP KV  L    I Q++ G  H +ALT DG I+S+G
Sbjct: 316 YVWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYSWG 373

Query: 312 RGDHGRLGYG 321
               G+LG G
Sbjct: 374 LNASGQLGIG 383



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 46/276 (16%)

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV 172
           K   G IL ++I             +++AGG HS  L   G ++T G+     +  Q+ +
Sbjct: 113 KKSNGFILSQEIHF-------YFGTKLSAGGAHSGFLIN-GELYTVGR----NNFGQLGM 160

Query: 173 PV--------RVQGLEQVKLIAVGAFH---NLALQEDGALWAWGNNEYGQLGTGD--TQP 219
            +        R+  +++++ I    F+   ++A+ + G ++ WG N  GQLG G+  T P
Sbjct: 161 GISTGDNINDRIMKVDRIRDIFSIHFNQNNSIAISQSGRVYTWGANSKGQLGIGNNNTDP 220

Query: 220 --------RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND- 270
                   R  P  + G++   +   A G  H+  L  DG V  +G+   G+LG G+N+ 
Sbjct: 221 AKASDAGNRQPPTEIPGINNAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGENNL 278

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
             +      VN++   +++QV  G  HS ALT +G ++ +GR  +G LG G         
Sbjct: 279 NRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGIVSPANTVQ 338

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
            VP+ +       +G+ +    K +A G  H LA+ 
Sbjct: 339 SVPVKV-------EGLPK---IKQIANGRDHILALT 364



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 40/249 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIG-NNEEREWVCV--VKALEPYKVRSVVAGSRNSLAICDDG 57
           + S  +++A+G    GQLG G NN  R       V  ++   V  V+AGS +S A+ ++G
Sbjct: 254 LKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVIQLRNVIQVIAGSEHSAALTENG 313

Query: 58  K--------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +                       +++P +V  L   KI Q A G  H LA+   G+ Y+
Sbjct: 314 EVYVWGRNQYGNLGNGIVSPANTVQSVPVKVEGLP--KIKQIANGRDHILALTYDGKIYS 371

Query: 98  WGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157
           WG N  GQ G           I  + + I         V  + AGGT S  + + G V  
Sbjct: 372 WGLNASGQLGIGGNGNPPPTPIPTKILNIQD-------VASIWAGGTQSFAILKNGEVKG 424

Query: 158 WGQ-------PWPPGDIKQISVPVR-VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEY 209
           WG             +  ++  P + V G++ V     GA HN AL  +G ++ WG N  
Sbjct: 425 WGANGNMASLALGESNTPKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFK 484

Query: 210 GQLGTGDTQ 218
           G LG  D Q
Sbjct: 485 GSLGRNDLQ 493


>gi|344292741|ref|XP_003418084.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator-like
           [Loxodonta africana]
          Length = 1100

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 145/308 (47%), Gaps = 26/308 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  V AL + K+  AA G  H L   + G  YA GGN  GQ G       DT    R   
Sbjct: 74  PICVKALKSEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG-----LGDTEE--RNSF 126

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
            +      +  ++Q++AG   S  LT +G ++ WG           I  + VP +V   +
Sbjct: 127 HLISFFTSRHKIKQLSAGANISAALTEDGELFMWGDNSEGQIGLNSISNVYVPRQVTVGK 186

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDIA 238
            +  I+ G +H+  +  +G L+ +G  E G+LG    Q  +   P Q +SG++  ++ +A
Sbjct: 187 PISWISCGYYHSAFVTMEGKLYTFGEPECGKLGLPSEQLINHRKP-QLVSGISEKVIQVA 245

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT+   VY +G+G  G+LG G     +   P  +  +  + I  +SCG  H+
Sbjct: 246 CGGGHTVVLTEKA-VYTFGQGRFGQLGLGSFIFQAPE-PAILEHVKDQKIRHISCGENHT 303

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  GH+++FG G HG+LG G +  T Q +    +  +          ++I  LVACG
Sbjct: 304 ALITDVGHMYTFGDGRHGKLGLGLENFTNQFVPTLCSHFS----------KFIIHLVACG 353

Query: 359 GRHTLAIV 366
           G H L   
Sbjct: 354 GCHMLIFA 361



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    +  P+ V+ L  E+VKL A G  H
Sbjct: 36  LSCGDEHTALITGNNKLYMFGSNNWGQ-LGLGSKSAVYRPICVKALKSEKVKLAACGRNH 94

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-TLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT+ R+    +   +    +  ++AG   S ALT+D
Sbjct: 95  TLVSTEGGNVYATGGNNEGQLGLGDTEERNSFHLISFFTSRHKIKQLSAGANISAALTED 154

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G   N  S+  VP++V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 155 GELFMWGDNSEGQIGL--NSISNVYVPRQVTV--GKPISWISCGYYHSAFVTMEGKLYTF 210

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG         P E  IN   P+    G+  + I   VACGG HT+ + E
Sbjct: 211 GEPECGKLGL--------PSEQLINHRKPQLVS-GISEKVIQ--VACGGGHTVVLTE 256



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 152/327 (46%), Gaps = 32/327 (9%)

Query: 49  NSLAICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           +S A+   GKT+  ENIPS+     N   +  + G  H   +    + Y +G N +GQ G
Sbjct: 6   DSGAVFTFGKTRLAENIPSKF-WFKNDVPIYLSCGDEHTALITGNNKLYMFGSNNWGQLG 64

Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +   + R I +    + K  V+  A G  H++V T  G+V+  G        
Sbjct: 65  L------GSKSAVYRPICVKALKSEK--VKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 116

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     +        ++K ++ GA  + AL EDG L+ WG+N  GQ+G       
Sbjct: 117 LGDTEERNSFHLISFFTSRHKIKQLSAGANISAALTEDGELFMWGDNSEGQIGLNSIS-- 174

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T +G++Y +G  E G+LG       +   PQ V
Sbjct: 175 NVYVPRQVTVGKPISWISCGYYHSAFVTMEGKLYTFGEPECGKLGLPSEQLINHRKPQLV 234

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + ++ E ++QV+CGG H+V LT    +++FG+G  G+LG G  +            P P 
Sbjct: 235 SGIS-EKVIQVACGGGHTVVLTEKA-VYTFGQGRFGQLGLGSFI---------FQAPEPA 283

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                 D++   + ++CG  HT  I +
Sbjct: 284 ILEHVKDQKI--RHISCGENHTALITD 308



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+  KV+    G  ++L   + G         
Sbjct: 52  LYMFGSNNWGQLGLGSKSAVYRPICVKALKSEKVKLAACGRNHTLVSTEGGNVYATGGNN 111

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + G  + WG N  GQ G  
Sbjct: 112 EGQLGLGDTEERNSFHLISFFTSRHKIKQLSAGANISAALTEDGELFMWGDNSEGQIG-- 169

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
                    I   ++ +P++      +  ++ G  HS  +T EG ++T+G+P       P
Sbjct: 170 ------LNSI--SNVYVPRQVTVGKPISWISCGYYHSAFVTMEGKLYTFGEPECGKLGLP 221

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS- 221
              +     P  V G+ E+V  +A G  H + L E  A++ +G   +GQLG G    ++ 
Sbjct: 222 SEQLINHRKPQLVSGISEKVIQVACGGGHTVVLTEK-AVYTFGQGRFGQLGLGSFIFQAP 280

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P  ++ +    +  I+ G  H+  +TD G +Y +G G HG+LG G  + +++ VP   +
Sbjct: 281 EPAILEHVKDQKIRHISCGENHTALITDVGHMYTFGDGRHGKLGLGLENFTNQFVPTLCS 340

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
             +   I  V+CGG H +  
Sbjct: 341 HFSKFIIHLVACGGCHMLIF 360


>gi|363728661|ref|XP_416780.3| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC418578
           [Gallus gallus]
          Length = 1212

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 97/323 (30%), Positives = 150/323 (46%), Gaps = 24/323 (7%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T   P+ V AL   K   A  G  H L   ++G  YA GGN  GQ G     +  T
Sbjct: 74  GSKNTVRKPTCVKALKPEKTKLAVCGRNHTLVYTEKGNVYAAGGNSEGQLGLGDTEERTT 133

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISV 172
             ++            +  ++Q+AAG   S  +T +G ++ WG          D   +SV
Sbjct: 134 FHLI-------SFFTNQHKIKQLAAGSYTSAAVTEDGQLFVWGDNSEGQIGLADKTCVSV 186

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P +V   + V  I+ G +H+  +  DG L+ +G  E G+LG    Q ++  +P   L  +
Sbjct: 187 PCQVDVGKPVSSISCGYYHSAFITGDGELYTFGEPENGKLGLLPEQLKNSRVPQPVLGIM 246

Query: 233 TLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             V+ +A GG H+  LT+ G VY +G G++G+LG G     +  VP+ V  L    I  V
Sbjct: 247 EKVNKVACGGEHTVVLTETG-VYTFGLGQYGQLGHGTLLFKTS-VPKSVKHLRSHKIHNV 304

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           +CG +H+  +  +G +F+FG G HG+LG G +    Q          P    + +   + 
Sbjct: 305 TCGESHTAVIAENGLMFTFGDGRHGKLGLGEENFANQ--------FDPALCSNFLS--FT 354

Query: 352 AKLVACGGRHTLAIVEWQTEESK 374
             LVACGG H L     + +ES+
Sbjct: 355 VLLVACGGCHMLVFATPRPKESE 377



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 97/316 (30%), Positives = 151/316 (47%), Gaps = 37/316 (11%)

Query: 62  ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG---EEPERKDDTGR 118
           ENIPS+     N K V  + G  H   V   G+ Y +G N++GQ G   +   RK    +
Sbjct: 28  ENIPSKF-WFKNDKPVHISCGDEHTAVVTGNGKLYMFGSNDWGQLGLGSKNTVRKPTCVK 86

Query: 119 ILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQISVPV 174
            L+     P++       +    G  H++V T +G+V+  G         GD ++ +   
Sbjct: 87  ALK-----PEK------TKLAVCGRNHTLVYTEKGNVYAAGGNSEGQLGLGDTEERTTFH 135

Query: 175 RVQ---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
            +       ++K +A G++ + A+ EDG L+ WG+N  GQ+G  D    S  +P Q   G
Sbjct: 136 LISFFTNQHKIKQLAAGSYTSAAVTEDGQLFVWGDNSEGQIGLADKTCVS--VPCQVDVG 193

Query: 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
             +  I+ G +HS  +T DGE+Y +G  E+G+LG       +  VPQ V L   E + +V
Sbjct: 194 KPVSSISCGYYHSAFITGDGELYTFGEPENGKLGLLPEQLKNSRVPQPV-LGIMEKVNKV 252

Query: 292 SCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWI 351
           +CGG H+V LT  G +++FG G +G+LG+G   T      VP ++   R+          
Sbjct: 253 ACGGEHTVVLTETG-VYTFGLGQYGQLGHG---TLLFKTSVPKSVKHLRSHK-------- 300

Query: 352 AKLVACGGRHTLAIVE 367
              V CG  HT  I E
Sbjct: 301 IHNVTCGESHTAVIAE 316



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 149/314 (47%), Gaps = 38/314 (12%)

Query: 10  WGSGEDGQLGIGN-NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
           +GS + GQLG+G+ N  R+  C VKAL+P K +  V G  ++L   + G           
Sbjct: 63  FGSNDWGQLGLGSKNTVRKPTC-VKALKPEKTKLAVCGRNHTLVYTEKGNVYAAGGNSEG 121

Query: 59  ------TKTENIPSQVNALSNT-KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                 T+       ++  +N  KI Q A G +   AV + G+ + WG N  GQ G    
Sbjct: 122 QLGLGDTEERTTFHLISFFTNQHKIKQLAAGSYTSAAVTEDGQLFVWGDNSEGQIG---- 177

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WPPG 165
             D T       + +P +      V  ++ G  HS  +T +G ++T+G+P        P 
Sbjct: 178 LADKTC------VSVPCQVDVGKPVSSISCGYYHSAFITGDGELYTFGEPENGKLGLLPE 231

Query: 166 DIKQISVPVRVQG-LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR-SQP 223
            +K   VP  V G +E+V  +A G  H + L E G ++ +G  +YGQLG G    + S P
Sbjct: 232 QLKNSRVPQPVLGIMEKVNKVACGGEHTVVLTETG-VYTFGLGQYGQLGHGTLLFKTSVP 290

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             V+ L    + ++  G  H+  + ++G ++ +G G HG+LG G+ + +++  P   +  
Sbjct: 291 KSVKHLRSHKIHNVTCGESHTAVIAENGLMFTFGDGRHGKLGLGEENFANQFDPALCSNF 350

Query: 284 AGEDIVQVSCGGTH 297
               ++ V+CGG H
Sbjct: 351 LSFTVLLVACGGCH 364


>gi|7406983|gb|AAF61856.1|AF189221_1 HERC2 [Drosophila melanogaster]
          Length = 743

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 121/256 (47%), Gaps = 29/256 (11%)

Query: 132 PKLI-------VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE 180
           PKL+       V  +A G  HS  +T  GHV TWG+        GD +    P  V+ L 
Sbjct: 10  PKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGHGDSEDQLRPKLVEALL 69

Query: 181 QVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
             + I +    G    L + +D  +W+WG+ +YG+LG G +     P  ++ L+GL +V 
Sbjct: 70  GYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGVVK 129

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +  G   S ALT  G VY WG+G+  RLG G  D   +  P+KV  L G+ I+ ++ G  
Sbjct: 130 VECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRR--PKKVAALQGKKIISIATGSL 187

Query: 297 HSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356
           H VA +  G ++++G  D G+LG G       P  V             +  + I K V 
Sbjct: 188 HCVACSDSGEVYTWGDNDEGQLGDGTVTAIQWPRLV-----------TALQGKHIVK-VT 235

Query: 357 CGGRHTLAIVEWQTEE 372
           CG  HTLA+   Q  E
Sbjct: 236 CGSAHTLALSTSQLSE 251



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 22/256 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   + + P  V  L+   +   A G  H  A+   G    WG   YG+ G       D+
Sbjct: 2   GNRMSYDRPKLVEHLNGMSVADIACGSAHSAAITASGHVLTWGKGRYGRLGH-----GDS 56

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI------ 170
              LR  +V       + I     +G   ++ +T + +VW+WG     GD  ++      
Sbjct: 57  EDQLRPKLV-EALLGYRAIDIACGSGDAQTLCITDDDNVWSWGD----GDYGKLGRGGSD 111

Query: 171 --SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226
              +P +++ L  + ++ V  G+  ++AL + GA++ WG  ++ +LG G      +P  V
Sbjct: 112 GCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKKV 171

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
             L G  ++ IA G  H  A +D GEVY WG  + G+L  GD   ++   P+ V  L G+
Sbjct: 172 AALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQL--GDGTVTAIQWPRLVTALQGK 229

Query: 287 DIVQVSCGGTHSVALT 302
            IV+V+CG  H++AL+
Sbjct: 230 HIVKVTCGSAHTLALS 245



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 104/264 (39%), Gaps = 53/264 (20%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGS--RNSLAICDD-------- 56
           ++ WG G  G+LG G++E++    +V+AL  Y+   +  GS    +L I DD        
Sbjct: 40  VLTWGKGRYGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGD 99

Query: 57  --------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   G +    +P ++ +L+   +V+   G    +A+   G  Y WG  ++ + G 
Sbjct: 100 GDYGKLGRGGSDGCKLPYKIESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGH 159

Query: 109 EPERKDDTGRI--LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PW 162
                   G +  +RR   +      K+I   +A G  H V  +  G V+TWG       
Sbjct: 160 --------GSVDHVRRPKKVAALQGKKII--SIATGSLHCVACSDSGEVYTWGDNDEGQL 209

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
             G +  I  P  V  L+   ++ V  G+ H LAL                  T     R
Sbjct: 210 GDGTVTAIQWPRLVTALQGKHIVKVTCGSAHTLALS-----------------TSQLSER 252

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHS 244
            +P+P   L    + D+A    H+
Sbjct: 253 LRPLPNPPLEYDLVRDLAPEALHA 276


>gi|443293653|ref|ZP_21032747.1| Regulator of chromosome condensation, RCC1 [Micromonospora lupini
           str. Lupac 08]
 gi|385883511|emb|CCH20898.1| Regulator of chromosome condensation, RCC1 [Micromonospora lupini
           str. Lupac 08]
          Length = 710

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 127/285 (44%), Gaps = 36/285 (12%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P +V+  + T I   A G  H LA+   G   AWG N YG  G    + D++ +    D 
Sbjct: 89  PVRVHLPTGTTISDVAAGAVHSLALTSTGTVLAWGTNYYGVLGNG-TKTDNSAQ---NDS 144

Query: 125 VIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI----------SV 172
            +P          V  VAA  T+S+ LT  G V  WG      D  Q+           V
Sbjct: 145 YVPAAVHLPAGTTVTSVAASSTYSLALTATGTVLAWGN----NDQGQLGNGTNTDSYLPV 200

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P+ +     +  IA    H LAL  +G + AWG+N  GQLG G+T   + P+ V   +G 
Sbjct: 201 PLALPAATTITAIAAATNHGLALTSNGTVLAWGSNGSGQLGNGNTTNSNTPVTVALPAGT 260

Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
           T+  IAA G HS ALT  G V  WG+                ++P  +   AG  I  V+
Sbjct: 261 TITAIAAAGSHSMALTSTGTVLTWGQ--------------DTVLPIPIVFPAGITITAVA 306

Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
            G  HS+ALT  G +F++G    G LG G    +  P  VP ++P
Sbjct: 307 SGNDHSLALTSTGKVFTWGANYFGSLGNGTFANSSVP--VPASVP 349



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 163/397 (41%), Gaps = 58/397 (14%)

Query: 8   IAWGSGEDGQLGIGNNEEREWVCVVKALEPY--KVRSVVAGSRNSLAICDDGK------- 58
           +AWG    G LG+G     + +  V+   P    +  V AG+ +SLA+   G        
Sbjct: 66  LAWGRDGYGALGVGTATLDDKLSPVRVHLPTGTTISDVAAGAVHSLALTSTGTVLAWGTN 125

Query: 59  --------TKTEN-------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                   TKT+N       +P+ V+  + T +   A    + LA+   G   AWG N+ 
Sbjct: 126 YYGVLGNGTKTDNSAQNDSYVPAAVHLPAGTTVTSVAASSTYSLALTATGTVLAWGNNDQ 185

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--- 160
           GQ G       +T   L   + +P        +  +AA   H + LT  G V  WG    
Sbjct: 186 GQLGN----GTNTDSYLPVPLALPAATT----ITAIAAATNHGLALTSNGTVLAWGSNGS 237

Query: 161 -PWPPGDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                G+    + PV V       +  IA    H++AL   G +  WG +          
Sbjct: 238 GQLGNGNTTNSNTPVTVALPAGTTITAIAAAGSHSMALTSTGTVLTWGQDTV-------- 289

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
                PIP+   +G+T+  +A+G  HS ALT  G+V+ WG    G LG G    SS  VP
Sbjct: 290 ----LPIPIVFPAGITITAVASGNDHSLALTSTGKVFTWGANYFGSLGNGTFANSSVPVP 345

Query: 278 QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIP 337
             V       I  ++ G   S+ALT  G + ++GR ++G++G G +  +   M V + +P
Sbjct: 346 ASVP--TDTTITAIAGGNAQSLALTSTGKLLAWGRNNYGQVGNGTRTGSWPGMGVSVPVP 403

Query: 338 APRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK 374
               A   +        +A G  H+LA+   +   S 
Sbjct: 404 VSLAADTKITT------MAGGYYHSLAVAAERAPTST 434



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 140/327 (42%), Gaps = 40/327 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIG----NNEEREWVCVVKALEP--YKVRSVVAGSRNSLAIC 54
           + ST +++AWG+   G LG G    N+ + +         P    V SV A S  SLA+ 
Sbjct: 113 LTSTGTVLAWGTNYYGVLGNGTKTDNSAQNDSYVPAAVHLPAGTTVTSVAASSTYSLALT 172

Query: 55  DDGK---------------TKTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAW 98
             G                T T++ +P  +   + T I   A    H LA+   G   AW
Sbjct: 173 ATGTVLAWGNNDQGQLGNGTNTDSYLPVPLALPAATTITAIAAATNHGLALTSNGTVLAW 232

Query: 99  GGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158
           G N  GQ G       +T       + +P        +  +AA G+HS+ LT  G V TW
Sbjct: 233 GSNGSGQLGNGNTTNSNT----PVTVALPAGT----TITAIAAAGSHSMALTSTGTVLTW 284

Query: 159 GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
           GQ         + +P+       +  +A G  H+LAL   G ++ WG N +G LG G   
Sbjct: 285 GQD------TVLPIPIVFPAGITITAVASGNDHSLALTSTGKVFTWGANYFGSLGNGTFA 338

Query: 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS----SK 274
             S P+P    +  T+  IA G   S ALT  G++  WGR  +G++G G    S      
Sbjct: 339 NSSVPVPASVPTDTTITAIAGGNAQSLALTSTGKLLAWGRNNYGQVGNGTRTGSWPGMGV 398

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVAL 301
            VP  V+L A   I  ++ G  HS+A+
Sbjct: 399 SVPVPVSLAADTKITTMAGGYYHSLAV 425



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 84/215 (39%), Gaps = 26/215 (12%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           + S  +++AWGS   GQLG GN         V       + ++ A   +S+A+   G   
Sbjct: 223 LTSNGTVLAWGSNGSGQLGNGNTTNSNTPVTVALPAGTTITAIAAAGSHSMALTSTGTVL 282

Query: 61  T----ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           T      +P  +   +   I   A G  H LA+   G+ + WG N +G  G         
Sbjct: 283 TWGQDTVLPIPIVFPAGITITAVASGNDHSLALTSTGKVFTWGANYFGSLGN-------- 334

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-------------PWP 163
           G      + +P        +  +A G   S+ LT  G +  WG+              WP
Sbjct: 335 GTFANSSVPVPASVPTDTTITAIAGGNAQSLALTSTGKLLAWGRNNYGQVGNGTRTGSWP 394

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQED 198
            G    + VPV +    ++  +A G +H+LA+  +
Sbjct: 395 -GMGVSVPVPVSLAADTKITTMAGGYYHSLAVAAE 428


>gi|449453906|ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis
           sativus]
          Length = 481

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 161/333 (48%), Gaps = 46/333 (13%)

Query: 55  DDGKTKTENIPSQ-----VNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
           D G+    N+ SQ      ++     +   A GG H L + + GR YA G N +GQ G  
Sbjct: 106 DFGRLGLGNLDSQWSPVPCSSFDREMLKGIACGGAHTLFLTESGRVYATGLNNFGQLGIS 165

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
            E++  T  +   ++ IP+          ++AG  HS V+T +G ++ WG          
Sbjct: 166 DEKRFSTEPV---EVRIPKE------AMHISAGYNHSCVVTADGELYMWGVNSNGQLGLG 216

Query: 164 PGDIKQISVPVRVQGLE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG------ 215
               K + +P +V  L+   +K  A+G+ H++A+ + G +++WG+   G+LG G      
Sbjct: 217 KKSAKAVHLPTKVDSLDGIVIKRAALGSDHSIAVADGGEVFSWGDGRSGRLGHGHESTFL 276

Query: 216 ---DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272
               +     P  ++ L G+ +  +AAG  HS  + ++G VY +G     R+ FG+ +K+
Sbjct: 277 GFLKSTSEHTPRLIKELEGIKVKHVAAGMLHSACVDENGAVYIFGERATNRVSFGEANKA 336

Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           +   P  ++ L   D  +V+CGG H+  LT+ G ++S+G  ++G LG G    +     +
Sbjct: 337 T--TPSLISTLL--DCEEVACGGYHTCVLTKGGDLYSWGSNENGCLGNGSTSVS----HL 388

Query: 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           P  +  P        +  ++K V+CG +HT AI
Sbjct: 389 PERVEGP------FSKSPVSK-VSCGWKHTAAI 414



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 142/334 (42%), Gaps = 46/334 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           + A G    GQLGI ++E+R     V+   P +   + AG  +S  +  DG+        
Sbjct: 151 VYATGLNNFGQLGI-SDEKRFSTEPVEVRIPKEAMHISAGYNHSCVVTADGELYMWGVNS 209

Query: 59  ----------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      K  ++P++V++L    I +AA+G  H +AV D G  ++WG    G+ G 
Sbjct: 210 NGQLGLGKKSAKAVHLPTKVDSLDGIVIKRAALGSDHSIAVADGGEVFSWGDGRSGRLGH 269

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP 161
             E            +       P+LI       V+ VAAG  HS  +   G V+ +G+ 
Sbjct: 270 GHES------TFLGFLKSTSEHTPRLIKELEGIKVKHVAAGMLHSACVDENGAVYIFGER 323

Query: 162 WPP----GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT 217
                  G+  + + P  +  L   + +A G +H   L + G L++WG+NE G LG G T
Sbjct: 324 ATNRVSFGEANKATTPSLISTLLDCEEVACGGYHTCVLTKGGDLYSWGSNENGCLGNGST 383

Query: 218 QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLG---------FG 267
                P  V+G    + V   + GW  TA    G ++ WG  G HG             G
Sbjct: 384 SVSHLPERVEGPFSKSPVSKVSCGWKHTAAISGGAIFTWGWGGSHGTFSVDGHSSGGQLG 443

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
                  + P K++L     +VQVSCG  H+ A+
Sbjct: 444 HGSDVDYVKPTKIDLGENVKVVQVSCGFNHTGAI 477



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 91/183 (49%), Gaps = 21/183 (11%)

Query: 158 WGQPWPPGDIKQIS----------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
           +G  W  GD  ++           VP      E +K IA G  H L L E G ++A G N
Sbjct: 98  FGAVWGNGDFGRLGLGNLDSQWSPVPCSSFDREMLKGIACGGAHTLFLTESGRVYATGLN 157

Query: 208 EYGQLGTGD-----TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
            +GQLG  D     T+P    IP + +       I+AG  HS  +T DGE+Y WG   +G
Sbjct: 158 NFGQLGISDEKRFSTEPVEVRIPKEAM------HISAGYNHSCVVTADGELYMWGVNSNG 211

Query: 263 RLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322
           +LG G     +  +P KV+ L G  I + + G  HS+A+   G +FS+G G  GRLG+G 
Sbjct: 212 QLGLGKKSAKAVHLPTKVDSLDGIVIKRAALGSDHSIAVADGGEVFSWGDGRSGRLGHGH 271

Query: 323 KVT 325
           + T
Sbjct: 272 EST 274



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           V++     ++L+ +G+    A++ D  L    NN   ++G        +P+        +
Sbjct: 22  VKISLFYFIELVMMGSERRAAVRLD--LHIRHNNFLTEIGLSKAMLTRRPLTK------S 73

Query: 234 LVDIAAGGWHSTAL----TDDGEVYG--WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           ++   +  W         +D G+ +G  WG G+ GRLG G+ D  S+  P   +    E 
Sbjct: 74  IIGFNSETWKRKITRWFASDSGKRFGAVWGNGDFGRLGLGNLD--SQWSPVPCSSFDREM 131

Query: 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG-RKVTTGQPMEVPI 334
           +  ++CGG H++ LT  G +++ G  + G+LG    K  + +P+EV I
Sbjct: 132 LKGIACGGAHTLFLTESGRVYATGLNNFGQLGISDEKRFSTEPVEVRI 179


>gi|116328469|ref|YP_798189.1| RCC1 domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis str. L550]
 gi|116121213|gb|ABJ79256.1| RCC1 domain-containing protein [Leptospira borgpetersenii serovar
           Hardjo-bovis str. L550]
          Length = 506

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 147/343 (42%), Gaps = 47/343 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG+   GQLGIGNN             P   R+  AG+R                P+
Sbjct: 199 VYTWGNNAKGQLGIGNNNTN----------PANPRA--AGNRQP--------------PT 232

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V  +++   V  A G  H L +   G   A+G N  GQ G      +     +      
Sbjct: 233 LVPGINDA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMN----- 285

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQISVPVRVQ 177
           P        V QV AG  HS  LT+ G V+ WG+              +  Q S PV+V+
Sbjct: 286 PVAVVGLSDVIQVIAGSEHSAALTKSGEVYVWGRNQYGNLGNGRLSAANAIQ-STPVKVE 344

Query: 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVD 236
           GL  +K IA G  H LAL  DG +++WG N  GQLG G +  P   P P Q L+      
Sbjct: 345 GLSGIKQIANGRDHILALASDGRIYSWGLNASGQLGIGGNGSPNPTPNPTQVLNITNASS 404

Query: 237 IAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295
           I AGG  S ++  +GEV GWG  G    L  G+ +      P K  ++  ++++   CG 
Sbjct: 405 IWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNTLKVYEPNKA-VVGIDNVIHFGCGA 463

Query: 296 THSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
           TH+ AL  +G I+ +G    G LG    +   G P  V I +P
Sbjct: 464 THNFALLGNGEIYGWGWNFKGSLGRQDLQANWGAPNPVSIKLP 506



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 128/288 (44%), Gaps = 39/288 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+   + GG H   + + G  Y  G N +GQ G      D+       D+++
Sbjct: 122 EVNFYFGTKL---SAGGAHSGFLKN-GEVYTVGRNNFGQLGTGNSTGDE-----NNDVIV 172

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                  +    +     +S+ +T+ G V+TWG               P  P        
Sbjct: 173 KLNSISNIF--SIHFNQNNSMAITKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQP 230

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS-----QPIPVQ 227
           P  V G+    + A G  H L L+ DG + A+G N  GQLG G     +      P+ V 
Sbjct: 231 PTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMNPVAVV 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAG 285
           GLS   ++ + AG  HS ALT  GEVY WGR ++G LG G    ++ +   P KV  L+G
Sbjct: 291 GLS--DVIQVIAGSEHSAALTKSGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSG 348

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             I Q++ G  H +AL  DG I+S+G    G+LG G     G P   P
Sbjct: 349 --IKQIANGRDHILALASDGRIYSWGLNASGQLGIGGN---GSPNPTP 391



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 134/324 (41%), Gaps = 50/324 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-----EEPERKDDTGRILR 121
           ++N++SN  I        + +A+   GR Y WG N  GQ G       P      G    
Sbjct: 173 KLNSISN--IFSIHFNQNNSMAITKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN--- 227

Query: 122 RDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQI 170
                  R  P L+         A G  H+++L  +G V  +GQ           D+   
Sbjct: 228 -------RQPPTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNAD 280

Query: 171 SV---PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP----RSQP 223
           S    PV V GL  V  +  G+ H+ AL + G ++ WG N+YG LG G        +S P
Sbjct: 281 SFSMNPVAVVGLSDVIQVIAGSEHSAALTKSGEVYVWGRNQYGNLGNGRLSAANAIQSTP 340

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V+GLSG+    IA G  H  AL  DG +Y WG    G+LG G N  S    P    +L
Sbjct: 341 VKVEGLSGIK--QIANGRDHILALASDGRIYSWGLNASGQLGIGGNG-SPNPTPNPTQVL 397

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFG-RGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
              +   +  GGT S ++ ++G +  +G  G+   L  G   T        + +  P  A
Sbjct: 398 NITNASSIWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNT--------LKVYEPNKA 449

Query: 343 GDGVDRRWIAKLVACGGRHTLAIV 366
             G+D         CG  H  A++
Sbjct: 450 VVGIDN---VIHFGCGATHNFALL 470



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 27/240 (11%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQ 169
           R  + D  I Q+        +++AGG HS  L + G V+T G+            GD + 
Sbjct: 110 RFKKPDGTILQKEVNFYFGTKLSAGGAHSGFL-KNGEVYTVGRNNFGQLGTGNSTGD-EN 167

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP-------- 219
             V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P        
Sbjct: 168 NDVIVKLNSISNIFSIHFNQNNSMAITKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN 227

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMV 276
           R  P  V G++   +   A G  H+  L  DG V  +G+   G+LG G ND    S  M 
Sbjct: 228 RQPPTLVPGINDAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMN 285

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P  V ++   D++QV  G  HS ALT+ G ++ +GR  +G LG GR          P+ +
Sbjct: 286 P--VAVVGLSDVIQVIAGSEHSAALTKSGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKV 343



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 105/262 (40%), Gaps = 49/262 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNE---EREWVCVVKALEPYKVRSVVAGSRNSLAICDDG 57
           + S  +++A+G    GQLG G N+   +   +  V  +    V  V+AGS +S A+   G
Sbjct: 253 LKSDGTVVAFGQNNVGQLGNGANDLNADSFSMNPVAVVGLSDVIQVIAGSEHSAALTKSG 312

Query: 58  K--------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYA 97
           +                       ++ P +V  LS  K  Q A G  H LA+   GR Y+
Sbjct: 313 EVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSGIK--QIANGRDHILALASDGRIYS 370

Query: 98  WGGNEYGQCG----EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153
           WG N  GQ G      P    +  ++L                  + AGGT S  + + G
Sbjct: 371 WGLNASGQLGIGGNGSPNPTPNPTQVLNITNA-----------SSIWAGGTQSFSILKNG 419

Query: 154 HVWTWGQPWPPGDIK-------QISVPVR-VQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
            V  WG      ++        ++  P + V G++ V     GA HN AL  +G ++ WG
Sbjct: 420 EVKGWGANGNTANLAIGETNTLKVYEPNKAVVGIDNVIHFGCGATHNFALLGNGEIYGWG 479

Query: 206 NNEYGQLGTGDTQPR-SQPIPV 226
            N  G LG  D Q     P PV
Sbjct: 480 WNFKGSLGRQDLQANWGAPNPV 501


>gi|366163660|ref|ZP_09463415.1| YD repeat protein [Acetivibrio cellulolyticus CD2]
          Length = 2438

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 146/354 (41%), Gaps = 95/354 (26%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A+  S+  WG+ + GQLG+GN  E + +  +  L    ++ + AG+ +++A+ +DG  K
Sbjct: 625 LANDGSVKVWGNNDYGQLGLGNTLEYKKIATIPDLR--YIKQLDAGTDHAVALLNDGTVK 682

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
                                                WG N+YGQ G         G + 
Sbjct: 683 V------------------------------------WGKNDYGQLG--------LGDLD 698

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWPPGDIKQISVPVR 175
           +R    P +      V+Q+AAG   ++VL  +G V  WG     Q   P D+K +  P+ 
Sbjct: 699 KR--TSPTKVEGLSGVKQIAAGQDFTLVLMEDGTVKGWGSNDYGQLCKPSDVKIVKTPID 756

Query: 176 VQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           +  L  VK IAVG     A+  +G + AWG+N+YGQLG GD   RS P  V GLS +  +
Sbjct: 757 LPQLSDVKEIAVGGNCAFAILNNGTVKAWGDNDYGQLGLGDKLERSTPTQVTGLSSVKKI 816

Query: 236 DI--------------------------------------AAGGWHSTALTDDGEVYGWG 257
            +                                        G ++   L  DG V GWG
Sbjct: 817 SVCWSNAIALLNDGTVKVWGHINNYTLPTSVGELKNVKQVGVGVYNYFVLLQDGSVKGWG 876

Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
               G LG GD ++  + +P K++ + G    Q+  G  HS  L  DG +  +G
Sbjct: 877 SNTLGSLGVGDTEQ--RTLPTKIDGIEGAK--QLINGNAHSFVLMPDGSLKGWG 926



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 86/271 (31%), Positives = 134/271 (49%), Gaps = 34/271 (12%)

Query: 55  DDGKT-------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
           DDGK+       +    P   +A +N   ++A  GG   LA+ + G    WG N+YGQ G
Sbjct: 586 DDGKSIELARIYEEYEQPQVFDATTNPAQIEA--GGKFTLALANDGSVKVWGNNDYGQLG 643

Query: 108 EEPERKDDTGRIL--RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----P 161
                    G  L  ++   IP        ++Q+ AG  H+V L  +G V  WG+     
Sbjct: 644 --------LGNTLEYKKIATIPDL----RYIKQLDAGTDHAVALLNDGTVKVWGKNDYGQ 691

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL-GTGDTQPR 220
              GD+ + + P +V+GL  VK IA G    L L EDG +  WG+N+YGQL    D +  
Sbjct: 692 LGLGDLDKRTSPTKVEGLSGVKQIAAGQDFTLVLMEDGTVKGWGSNDYGQLCKPSDVKIV 751

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             PI +  LS +   +IA GG  + A+ ++G V  WG  ++G+LG G  DK  +  P +V
Sbjct: 752 KTPIDLPQLSDVK--EIAVGGNCAFAILNNGTVKAWGDNDYGQLGLG--DKLERSTPTQV 807

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
             L+   + ++S   ++++AL  DG +  +G
Sbjct: 808 TGLS--SVKKISVCWSNAIALLNDGTVKVWG 836



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNL 193
           Q+ AGG  ++ L  +G V  WG         G+  +      +  L  +K +  G  H +
Sbjct: 614 QIEAGGKFTLALANDGSVKVWGNNDYGQLGLGNTLEYKKIATIPDLRYIKQLDAGTDHAV 673

Query: 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEV 253
           AL  DG +  WG N+YGQLG GD   R+ P  V+GLSG+    IAAG   +  L +DG V
Sbjct: 674 ALLNDGTVKVWGKNDYGQLGLGDLDKRTSPTKVEGLSGVK--QIAAGQDFTLVLMEDGTV 731

Query: 254 YGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313
            GWG  ++G+L         K+V   ++L    D+ +++ GG  + A+  +G + ++G  
Sbjct: 732 KGWGSNDYGQLC---KPSDVKIVKTPIDLPQLSDVKEIAVGGNCAFAILNNGTVKAWGDN 788

Query: 314 DHGRLGYGRKVTTGQPMEV 332
           D+G+LG G K+    P +V
Sbjct: 789 DYGQLGLGDKLERSTPTQV 807


>gi|302817810|ref|XP_002990580.1| hypothetical protein SELMODRAFT_185380 [Selaginella moellendorffii]
 gi|300141748|gb|EFJ08457.1| hypothetical protein SELMODRAFT_185380 [Selaginella moellendorffii]
          Length = 863

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 133/279 (47%), Gaps = 35/279 (12%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  V +L    + Q A G  H   V  QG  ++WG    G+ G            +  D
Sbjct: 113 LPRAVRSLVVLDVQQIACGVRHAALVTRQGEVFSWGEESGGRLGHG----------VDAD 162

Query: 124 IVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQIS--VPVR 175
           +  PQ         V+ VA G  HS  +T+ G ++TWG         G    IS   P R
Sbjct: 163 VAHPQLIDSLASSTVQYVACGEYHSCAVTQSGDLYTWGDGTHNFGLLGHGNNISHWTPKR 222

Query: 176 VQG-LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           V G LE V++  +A G +H + +   G L+++G+  +G LG GD +  S P  V+ L GL
Sbjct: 223 VGGPLEGVRVSSVACGPWHTVLVTSTGQLFSFGDGTFGVLGHGDRKSASMPREVESLKGL 282

Query: 233 TLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             +  A G WH+ A+ +             G+++ WG G+  RLG GD  K  K+VP  V
Sbjct: 283 KTLRAACGPWHTAAVVEVMSRYSNAGSSLSGKLFTWGDGDKNRLGHGD--KEQKLVPTCV 340

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             L   +  QV+CG + +VALT  GH+++ G   +G+LG
Sbjct: 341 AALVDHNFRQVACGHSLTVALTTTGHLYTMGSVSYGQLG 379



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 19/204 (9%)

Query: 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
           VR   +  V+ IA G  H   +   G +++WG    G+LG G     + P  +  L+  T
Sbjct: 117 VRSLVVLDVQQIACGVRHAALVTRQGEVFSWGEESGGRLGHGVDADVAHPQLIDSLASST 176

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEH--GRLGFGDNDKSSKMVPQKV-NLLAGEDIVQ 290
           +  +A G +HS A+T  G++Y WG G H  G LG G+N   S   P++V   L G  +  
Sbjct: 177 VQYVACGEYHSCAVTQSGDLYTWGDGTHNFGLLGHGNN--ISHWTPKRVGGPLEGVRVSS 234

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           V+CG  H+V +T  G +FSFG G  G LG+G + +   P EV                + 
Sbjct: 235 VACGPWHTVLVTSTGQLFSFGDGTFGVLGHGDRKSASMPREVE-------------SLKG 281

Query: 351 IAKL-VACGGRHTLAIVEWQTEES 373
           +  L  ACG  HT A+VE  +  S
Sbjct: 282 LKTLRAACGPWHTAAVVEVMSRYS 305



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 45/330 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG    G+LG G + +     ++ +L    V+ V  G  +S A+   G   T     
Sbjct: 144 VFSWGEESGGRLGHGVDADVAHPQLIDSLASSTVQYVACGEYHSCAVTQSGDLYTWGDGT 203

Query: 62  ---------ENI----PSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
                     NI    P +V   L   ++   A G WH + V   G+ +++G   +G  G
Sbjct: 204 HNFGLLGHGNNISHWTPKRVGGPLEGVRVSSVACGPWHTVLVTSTGQLFSFGDGTFGVLG 263

Query: 108 EEPERKDDTGR---ILRRDIVIPQRCAP-------KLIVRQVAAGGTHSVVLTREGHVWT 157
               +     R    L+    +   C P       +++ R   AG + S      G ++T
Sbjct: 264 HGDRKSASMPREVESLKGLKTLRAACGPWHTAAVVEVMSRYSNAGSSLS------GKLFT 317

Query: 158 WG----QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
           WG         GD +Q  VP  V  L     + +A G    +AL   G L+  G+  YGQ
Sbjct: 318 WGDGDKNRLGHGDKEQKLVPTCVAALVDHNFRQVACGHSLTVALTTTGHLYTMGSVSYGQ 377

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG  D Q   +   V  L    + +++ G +H  ALT  G+V  WG+G +GRLG GD + 
Sbjct: 378 LG--DPQATGRLPGVLRLGRTLIEEVSCGAYHVAALTSKGDVCTWGKGANGRLGHGDAE- 434

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             + VP  V  L  + + +VSCG + + A+
Sbjct: 435 -DRDVPSLVEALRDKQVKKVSCGSSFTSAI 463



 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S   +  WG G +G+LG G+ E+R+   +V+AL   +V+ V  GS  + AIC
Sbjct: 411 LTSKGDVCTWGKGANGRLGHGDAEDRDVPSLVEALRDKQVKKVSCGSSFTSAIC 464


>gi|281347459|gb|EFB23043.1| hypothetical protein PANDA_001337 [Ailuropoda melanoleuca]
          Length = 1199

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 151/313 (48%), Gaps = 26/313 (8%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT 116
           G   T N P+ V AL   K+  AA G  H L   + G+ YA GGN  GQ G     + ++
Sbjct: 60  GSKSTVNKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYASGGNNEGQLGLGDTDERNS 119

Query: 117 GRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQISV 172
             ++       QR      ++Q++AG   S  LT +G ++ WG          +I  + V
Sbjct: 120 FHLI--SFFTSQR-----KIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLKNITNVCV 172

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           P +V   + +  I+ G +H+  +  +G L+ +G  E G+LG       +  +P Q + G+
Sbjct: 173 PQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPKQLLVNHRMP-QSVPGI 231

Query: 233 --TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290
              +V +A GG H+  LT+   VY +G G+ G+LG G     +  VP+ +  +    I  
Sbjct: 232 PEKVVQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLGTFLFETP-VPKVIEHIKDLKISS 289

Query: 291 VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRW 350
           + CG  H+  +T  G +++FG G HG+LG G +  T Q          P    + +  R+
Sbjct: 290 IFCGENHTALITDLGLMYTFGDGRHGKLGLGLENFTNQ--------FTPTLCSNFL--RF 339

Query: 351 IAKLVACGGRHTL 363
           I +LVACGG HTL
Sbjct: 340 IVQLVACGGCHTL 352



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 146/318 (45%), Gaps = 38/318 (11%)

Query: 10  WGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE--NIPSQ 67
           +GS   GQLG+G+         VKAL+P KV+    G  ++L   + GK      N   Q
Sbjct: 49  FGSNNWGQLGLGSKSTVNKPTCVKALKPEKVKFAACGRNHTLVSTEGGKVYASGGNNEGQ 108

Query: 68  VNA---------------LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPER 112
           +                  S  KI Q + G     A+ + G  + WG N  GQ G     
Sbjct: 109 LGLGDTDERNSFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIG----L 164

Query: 113 KDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--GDIKQI 170
           K+ T      ++ +PQ+      +  ++ G  HS  +T EG ++T+G+P     G  KQ+
Sbjct: 165 KNIT------NVCVPQQVTVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPKQL 218

Query: 171 SV----PVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
            V    P  V G+ E+V  +A G  H + L E  A++ +G  ++GQLG G T     P+P
Sbjct: 219 LVNHRMPQSVPGIPEKVVQVACGGGHTVVLTEK-AVYTFGLGQFGQLGLG-TFLFETPVP 276

Query: 226 --VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             ++ +  L +  I  G  H+  +TD G +Y +G G HG+LG G  + +++  P   +  
Sbjct: 277 KVIEHIKDLKISSIFCGENHTALITDLGLMYTFGDGRHGKLGLGLENFTNQFTPTLCSNF 336

Query: 284 AGEDIVQVSCGGTHSVAL 301
               +  V+CGG H++  
Sbjct: 337 LRFIVQLVACGGCHTLVF 354



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 24/237 (10%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    ++ P  V+ L  E+VK  A G  H
Sbjct: 30  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKSTVNKPTCVKALKPEKVKFAACGRNH 88

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL-SGLTLVDIAAGGWHSTALTDD 250
            L   E G ++A G N  GQLG GDT  R+    +    S   +  ++AG   S ALT+D
Sbjct: 89  TLVSTEGGKVYASGGNNEGQLGLGDTDERNSFHLISFFTSQRKIKQLSAGSNTSAALTED 148

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GE++ WG    G++G    + ++  VPQ+V +  G+ I  +SCG  HS  +T +G +++F
Sbjct: 149 GELFMWGDNSEGQIGL--KNITNVCVPQQVTV--GKPISWISCGYYHSAFVTTEGELYTF 204

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G  + G+LG  +++     M  P ++P       G+  + +   VACGG HT+ + E
Sbjct: 205 GEPESGKLGLPKQLLVNHRM--PQSVP-------GIPEKVVQ--VACGGGHTVVLTE 250



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 82/273 (30%), Positives = 130/273 (47%), Gaps = 21/273 (7%)

Query: 57  GKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           GKTK  ENIPS+     N      + G  H   V    + Y +G N +GQ G   +   +
Sbjct: 8   GKTKFAENIPSKF-WFKNDIPAFLSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKSTVN 66

Query: 116 TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQ-- 169
               ++   + P++      V+  A G  H++V T  G V+  G         GD  +  
Sbjct: 67  KPTCVK--ALKPEK------VKFAACGRNHTLVSTEGGKVYASGGNNEGQLGLGDTDERN 118

Query: 170 -ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
              +        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    +  +P Q 
Sbjct: 119 SFHLISFFTSQRKIKQLSAGSNTSAALTEDGELFMWGDNSEGQIGLKNIT--NVCVPQQV 176

Query: 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288
             G  +  I+ G +HS  +T +GE+Y +G  E G+LG       +  +PQ V  +  E +
Sbjct: 177 TVGKPISWISCGYYHSAFVTTEGELYTFGEPESGKLGLPKQLLVNHRMPQSVPGIP-EKV 235

Query: 289 VQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           VQV+CGG H+V LT    +++FG G  G+LG G
Sbjct: 236 VQVACGGGHTVVLTEKA-VYTFGLGQFGQLGLG 267


>gi|2244793|emb|CAB10216.1| disease resistance N like protein [Arabidopsis thaliana]
 gi|7268142|emb|CAB78479.1| disease resistance N like protein [Arabidopsis thaliana]
          Length = 1996

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 55/280 (19%)

Query: 72   SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
            S T  +  A G  H   V  QG  + W          E E     G  ++ D+     C 
Sbjct: 1200 STTVKIDIACGVRHIALVTRQGEVFTW----------EEEAGGRLGHGIQVDV-----CR 1244

Query: 132  PKLI-------VRQVAAGGTHSVVLTREGHVWTWG---------------QPWPPGDIKQ 169
            PKL+       +  VA G  H+  ++  G ++TWG                 W P   K+
Sbjct: 1245 PKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIP---KR 1301

Query: 170  ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229
            +S PV  +GL QV  +A G +H+     +G L+ +G+  +G LG GD +  S P  V+ L
Sbjct: 1302 VSGPV--EGL-QVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKML 1358

Query: 230  SGLTLVDIAAGGWHSTAL----------TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            SGL  + +A G WH+ A+          T   +++ WG G+  RLG G+  K + ++P  
Sbjct: 1359 SGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGN--KETYLLPTC 1416

Query: 280  VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            V+ L   +  Q++CG T +VALT  GH+F+ G   HG+LG
Sbjct: 1417 VSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLG 1456



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 21/206 (10%)

Query: 139  VAAGGTHSVVLTREGHVWTW----GQPWPPGDIKQISVPVRVQ--GLEQVKLIAVGAFHN 192
            +A G  H  ++TR+G V+TW    G     G    +  P  V+   L  +  +A G +H 
Sbjct: 1207 IACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHT 1266

Query: 193  LALQEDGALWAWGN--NEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTD 249
             A+   G L+ WG+  +  G LG G       P  V G + GL ++ +A G WHS   T 
Sbjct: 1267 CAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSALATA 1326

Query: 250  DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL-------- 301
            +G+++ +G G  G LG GD +  S   P++V +L+G   ++V+CG  H+VA+        
Sbjct: 1327 NGKLFTFGDGAFGVLGHGDRESVS--YPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTG 1384

Query: 302  --TRDGHIFSFGRGDHGRLGYGRKVT 325
              T    +F++G GD  RLG+G K T
Sbjct: 1385 TSTSSRKLFTWGDGDKNRLGHGNKET 1410



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 33/224 (14%)

Query: 153  GHVWTWGQPWPPGDIKQISVPVRVQGLEQVKL-IAVGAFHNLALQEDGALWAWGNNEYGQ 211
            G V+ WG+ W  G    IS P  V     VK+ IA G  H   +   G ++ W     G+
Sbjct: 1179 GDVYVWGEVWSDG----IS-PDGVVNSTTVKIDIACGVRHIALVTRQGEVFTWEEEAGGR 1233

Query: 212  LGTGDTQPRSQPIPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEH--GRLGFGD 268
            LG G      +P  V+ L+ LT +D +A G +H+ A++  G+++ WG G H  G LG G 
Sbjct: 1234 LGHGIQVDVCRPKLVEFLA-LTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGS 1292

Query: 269  NDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
            +   S  +P++V+  + G  ++ V+CG  HS   T +G +F+FG G  G LG+G + +  
Sbjct: 1293 D--LSHWIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGDRESVS 1350

Query: 328  QPMEVPINIPAPRNAGDGVDRRWIAKL----VACGGRHTLAIVE 367
             P EV                + ++ L    VACG  HT+AIVE
Sbjct: 1351 YPKEV----------------KMLSGLKTLKVACGVWHTVAIVE 1378



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 110/275 (40%), Gaps = 40/275 (14%)

Query: 64   IPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
            IP +V+  +   +++  A G WH       G+ + +G   +G  G             R 
Sbjct: 1298 IPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHGD----------RE 1347

Query: 123  DIVIPQ--RCAPKLIVRQVAAGGTHSVVL----------TREGHVWTWGQPWPPGDIKQI 170
             +  P+  +    L   +VA G  H+V +          T    ++TWG     GD  ++
Sbjct: 1348 SVSYPKEVKMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGD----GDKNRL 1403

Query: 171  S--------VPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
                     +P  V  L       IA G    +AL   G ++  G   +GQLG+ ++  +
Sbjct: 1404 GHGNKETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGK 1463

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
               +    L G  + +I+ G  H   LT   EV+ WG+G +GRLG GD D   +  P  V
Sbjct: 1464 LPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKD--DRKTPTLV 1521

Query: 281  NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
              L    +  +SCG   SV  +     F F R  H
Sbjct: 1522 EALRERHVKSISCGADQSVC-SGCRQAFGFTRKRH 1555



 Score = 45.1 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 50/193 (25%)

Query: 3    STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTE 62
            S+  +  WG G+  +LG GN E                                    T 
Sbjct: 1388 SSRKLFTWGDGDKNRLGHGNKE------------------------------------TY 1411

Query: 63   NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
             +P+ V++L +    Q A G    +A+   G  +  GG  +GQ G      D     L +
Sbjct: 1412 LLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGS--SNSDGKLPCLVQ 1469

Query: 123  DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            D ++ +       V +++ G  H  VLT    V+TWG+        GD      P  V+ 
Sbjct: 1470 DRLVGE------FVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEA 1523

Query: 179  LEQ--VKLIAVGA 189
            L +  VK I+ GA
Sbjct: 1524 LRERHVKSISCGA 1536



 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 1    MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSL 51
            + S + +  WG G +G+LG G+ ++R+   +V+AL    V+S+  G+  S+
Sbjct: 1490 LTSRSEVFTWGKGSNGRLGHGDKDDRKTPTLVEALRERHVKSISCGADQSV 1540


>gi|395521017|ref|XP_003764618.1| PREDICTED: RCC1 and BTB domain-containing protein 1 [Sarcophilus
           harrisii]
          Length = 531

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 33/259 (12%)

Query: 121 RRDIVIPQR----CAPKLIVRQVAAG-GTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
            +  ++P++    C  K  ++ ++ G G H ++ T +G V+ WG         G   Q  
Sbjct: 59  NQSTIVPKKLEALCGKK--IKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGI 116

Query: 172 VPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
            P++V     ++QV  +A G+ H++AL  DG ++AWG N  GQ+G+G T   +QP P + 
Sbjct: 117 APIQVCTNLLIKQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTA--NQPTPRKV 174

Query: 229 LSGLTL---VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
            + L +   V IA G   S A+ D+GEVYGWG   +G+LG G+N   +++ P +V  L  
Sbjct: 175 TNCLHIKRVVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNN--GNQLTPCRVAALHS 232

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDG 345
             ++Q+ CG  H++ALT +G ++++G   +G+LG G K     P ++             
Sbjct: 233 VCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKSNLLSPAQIM------------ 280

Query: 346 VDRRWIAKLVACGGRHTLA 364
           V++  + ++ AC   HT A
Sbjct: 281 VEKERVVEIAACHSAHTSA 299



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   KI   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTIVPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+++QV   A G  HS+ L  +G V+ WG         G   
Sbjct: 116 ---------IAPIQVCTNLLIKQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTA 166

Query: 169 QISVPVRVQGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P +V     +K    IA G   ++A+ ++G ++ WG N  GQLG G+   +  P  
Sbjct: 167 NQPTPRKVTNCLHIKRVVSIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPCR 226

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L  + ++ I  G  H+ ALTD+G +Y WG   +G+LG G  +KS+ + P ++ ++  
Sbjct: 227 VAALHSVCVLQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--NKSNLLSPAQI-MVEK 283

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E +V++ +C   H S A T+ GH++ +G+
Sbjct: 284 ERVVEIAACHSAHTSAAKTQGGHVYMWGQ 312



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P  +  + +  +    A   + +     ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQEIASIRKACVFGTSANEAIYVTHSDEVFVFGLNCSNCLGTGDNQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ L G  +  ++ G G H    T+DG VY WG   + +LG G  ++    +    
Sbjct: 64  VPKKLEALCGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPIQVCT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL  + +++V+CG  HS+AL  DG ++++G  + G++G G             N P PR
Sbjct: 124 NLLI-KQVIEVACGSHHSMALAADGEVYAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KVTNCLHIKRVVS-IACGQTSSMAVLD 198



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 32/181 (17%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEE----REWVCVVKALEPYKVRSVVAGSRNSLAICDD 56
           +A+   + AWG    GQ+G G+       R+   V   L   +V S+  G  +S+A+ D+
Sbjct: 143 LAADGEVYAWGYNNCGQVGSGSTANQPTPRK---VTNCLHIKRVVSIACGQTSSMAVLDN 199

Query: 57  GKTK----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
           G+                   +  P +V AL +  ++Q   G  H LA+ D+G  YAWG 
Sbjct: 200 GEVYGWGYNGNGQLGLGNNGNQLTPCRVAALHSVCVLQIVCGYAHTLALTDEGLLYAWGA 259

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWG 159
           N YGQ G       +   +L    ++ ++   + +V   A    H S   T+ GHV+ WG
Sbjct: 260 NTYGQLG-----TGNKSNLLSPAQIMVEK---ERVVEIAACHSAHTSAAKTQGGHVYMWG 311

Query: 160 Q 160
           Q
Sbjct: 312 Q 312


>gi|381206474|ref|ZP_09913545.1| regulator of chromosome condensation, RCC1, partial [SAR324 cluster
           bacterium JCVI-SC AAA005]
          Length = 436

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 20/255 (7%)

Query: 84  WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG 143
           ++C AV D G A  WG N +G+ G+   ++ +T          P +      V  ++AG 
Sbjct: 40  YNC-AVLDNGSAMCWGDNNHGKLGDNTTQRRNT----------PTKVVGLDNVSSISAGK 88

Query: 144 THSVVLTREGHVWTWG--QPWPPGDIKQI---SVPVRVQGLEQVKLIAVGAFHNLALQED 198
           +H+  +   G    WG  +    GD   +   ++P  V G   VK I+VG  H  A+ ++
Sbjct: 89  SHTCAVLNNGSAMCWGRNEYSKLGDSTNVDNRTLPALVSGASNVKGISVGDDHTCAMLDN 148

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G+   WG N YGQLG G+T  +S P  V GL+   +  I++GG HS AL  +  +  WG 
Sbjct: 149 GSAVCWGGNAYGQLGIGNTDNKSLPTLVSGLNSDNVTSISSGGKHSCALLRNRTIKCWGE 208

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
             +G+L  GDN  +  +    V  +   ++ ++S GG H+ A+  +  I  +G+   G+L
Sbjct: 209 NYYGQL--GDNTTTDNLSATLV--VGITNVTKISTGGAHTCAILDNQSIACWGKNSSGQL 264

Query: 319 GYGRKVTTGQPMEVP 333
           G G      +P  +P
Sbjct: 265 GIGNTDNRSEPNIIP 279



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 157/358 (43%), Gaps = 64/358 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           S + WG    G+LG    + R     V  L+   V S+ AG  ++ A+ ++G        
Sbjct: 49  SAMCWGDNNHGKLGDNTTQRRNTPTKVVGLD--NVSSISAGKSHTCAVLNNGSAMCWGRN 106

Query: 59  --------TKTEN--IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                   T  +N  +P+ V+  SN K +  ++G  H  A+ D G A  WGGN YGQ G 
Sbjct: 107 EYSKLGDSTNVDNRTLPALVSGASNVKGI--SVGDDHTCAMLDNGSAVCWGGNAYGQLG- 163

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQP 161
                     I   D     +  P L+       V  +++GG HS  L R   +  WG+ 
Sbjct: 164 ----------IGNTD----NKSLPTLVSGLNSDNVTSISSGGKHSCALLRNRTIKCWGEN 209

Query: 162 W--PPGD---IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
           +    GD      +S  + V G+  V  I+ G  H  A+ ++ ++  WG N  GQLG G+
Sbjct: 210 YYGQLGDNTTTDNLSATLVV-GITNVTKISTGGAHTCAILDNQSIACWGKNSSGQLGIGN 268

Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSK-- 274
           T  RS+P  +  L+ +T  +I+AG  H+     +G+   WG   +G+LG   +  SS+  
Sbjct: 269 TDNRSEPNIIPSLNNVT--NISAGKDHTCVTFGNGQAKCWGENYYGQLGSALSGNSSQNE 326

Query: 275 ---------MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
                      P  V+ L   ++  +S GG  + A   +G    +GR   G+LG G +
Sbjct: 327 HSYNSGTDNSTPVLVSGLT--NVKGISAGGYQTCATFDNGTAKCWGRNSEGQLGVGSQ 382



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 117/307 (38%), Gaps = 66/307 (21%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
           M    S + WG    GQLGIGN + +    +V  L    V S+ +G ++S A+  +    
Sbjct: 145 MLDNGSAVCWGGNAYGQLGIGNTDNKSLPTLVSGLNSDNVTSISSGGKHSCALLRNRTIK 204

Query: 57  -----------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                        T T+N+ + +  +  T + + + GG H  A+ D      WG N  GQ
Sbjct: 205 CWGENYYGQLGDNTTTDNLSATL-VVGITNVTKISTGGAHTCAILDNQSIACWGKNSSGQ 263

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ 160
            G           I   D     R  P +I     V  ++AG  H+ V    G    WG+
Sbjct: 264 LG-----------IGNTD----NRSEPNIIPSLNNVTNISAGKDHTCVTFGNGQAKCWGE 308

Query: 161 PWP-------PGDIKQI----------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
            +         G+  Q           S PV V GL  VK I+ G +   A  ++G    
Sbjct: 309 NYYGQLGSALSGNSSQNEHSYNSGTDNSTPVLVSGLTNVKGISAGGYQTCATFDNGTAKC 368

Query: 204 WGNNEYGQLGTGDTQPRSQ-PIPVQGLSGLTLV------------DIAAGGWHSTALTDD 250
           WG N  GQLG G     S  P+ V  L+ + L              ++ G  HS A  D+
Sbjct: 369 WGRNSEGQLGVGSQYDNSSVPVVVDNLTNIRLQPKASSLSSSIGETLSVGENHSCAAMDN 428

Query: 251 GEVYGWG 257
           G    WG
Sbjct: 429 GSTMCWG 435



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 141/354 (39%), Gaps = 65/354 (18%)

Query: 6   SIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG------- 57
           S + WG  E  +LG   N + R    +V       V+ +  G  ++ A+ D+G       
Sbjct: 99  SAMCWGRNEYSKLGDSTNVDNRTLPALVSGAS--NVKGISVGDDHTCAMLDNGSAVCWGG 156

Query: 58  ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                     T  +++P+ V+ L++  +   + GG H  A+        WG N YGQ G+
Sbjct: 157 NAYGQLGIGNTDNKSLPTLVSGLNSDNVTSISSGGKHSCALLRNRTIKCWGENYYGQLGD 216

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP---- 164
                +     L   +V+         V +++ GG H+  +     +  WG+        
Sbjct: 217 NTTTDN-----LSATLVVGIT-----NVTKISTGGAHTCAILDNQSIACWGKNSSGQLGI 266

Query: 165 GDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-- 222
           G+    S P  +  L  V  I+ G  H      +G    WG N YGQLG+  +   SQ  
Sbjct: 267 GNTDNRSEPNIIPSLNNVTNISAGKDHTCVTFGNGQAKCWGENYYGQLGSALSGNSSQNE 326

Query: 223 -----------PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG---- 267
                      P+ V GL+ +    I+AGG+ + A  D+G    WGR   G+LG G    
Sbjct: 327 HSYNSGTDNSTPVLVSGLTNVK--GISAGGYQTCATFDNGTAKCWGRNSEGQLGVGSQYD 384

Query: 268 --------DNDKSSKMVPQKVNLLA--GEDIVQVSCGGTHSVALTRDGHIFSFG 311
                   DN  + ++ P+  +L +  GE +   S G  HS A   +G    +G
Sbjct: 385 NSSVPVVVDNLTNIRLQPKASSLSSSIGETL---SVGENHSCAAMDNGSTMCWG 435



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 19/189 (10%)

Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW 242
           + I+ G  +N A+ ++G+   WG+N +G+LG   TQ R+ P  V GL  ++   I+AG  
Sbjct: 32  EFISSGLDYNCAVLDNGSAMCWGDNNHGKLGDNTTQRRNTPTKVVGLDNVS--SISAGKS 89

Query: 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ-VSCGGTHSVAL 301
           H+ A+ ++G    WGR E+ +LG   N   ++ +P    L++G   V+ +S G  H+ A+
Sbjct: 90  HTCAVLNNGSAMCWGRNEYSKLGDSTN-VDNRTLPA---LVSGASNVKGISVGDDHTCAM 145

Query: 302 TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRH 361
             +G    +G   +G+LG G       P  V            G++   +   ++ GG+H
Sbjct: 146 LDNGSAVCWGGNAYGQLGIGNTDNKSLPTLVS-----------GLNSDNVTS-ISSGGKH 193

Query: 362 TLAIVEWQT 370
           + A++  +T
Sbjct: 194 SCALLRNRT 202


>gi|330836303|ref|YP_004410944.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
 gi|329748206|gb|AEC01562.1| cell wall/surface repeat protein [Sphaerochaeta coccoides DSM
           17374]
          Length = 950

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 167/351 (47%), Gaps = 49/351 (13%)

Query: 10  WGSGED--GQLGIGNNEEREWVCVVKA---LEPY--KVRSVVAGSRNSLAICDDG----- 57
           W +G++  GQLG G    R     VKA   L  +   V +V  G R+++ +  DG     
Sbjct: 596 WATGQNTYGQLGDGTLINRYTPVQVKASTTLNDFMTDVVAVSTGERHTMILKKDGTLWAT 655

Query: 58  ------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105
                       +    + P+QV  +  T +   + G  + + +      +A G N YGQ
Sbjct: 656 GKNYFGQLGLGSQEPDRSTPTQVTFM-GTDVAAVSTGHSYTMILKKDDTLWATGFNSYGQ 714

Query: 106 CGEEPERKDDTGRILRRDIVIPQRCAPKL-----IVRQVAAGGTHSVVLTREGHVWTWGQ 160
            G+        G    R   +  + +  L      V  V+ G  H+++L ++G +W  G+
Sbjct: 715 LGD--------GTTSNRTSPVQVKASTTLNDFMTDVAAVSTGDDHTMILKKDGTLWAIGR 766

Query: 161 PWP--PGDIKQI--SVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215
            +    GD  Q   S PV+V  +   V  ++ G  H L L++DG LW  G N +GQLG  
Sbjct: 767 NYSGQLGDDTQTDRSTPVQVTSMGTDVAAVSAGGNHTLILKKDGTLWVTGYNGFGQLGDS 826

Query: 216 DTQPRSQPIPVQGLSGL-TLVDI---AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-D 270
            T  R+ P+ V+G  G+  + D+   +AG +H+  L  DG ++  G  E G+LG GD+  
Sbjct: 827 TTDNRNMPVQVKGSGGVGFMTDVKAASAGMYHTMILKKDGTLWATGGNEFGQLGLGDSGS 886

Query: 271 KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321
           ++S+ +P ++  + G D+  VS G  H++ L +DG +++ GR +  +LG G
Sbjct: 887 ETSRSIPVQITSM-GNDVADVSTGRFHTMILKKDGTLWATGRNNFAQLGNG 936



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 43/311 (13%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           KI   + G ++ + +   G  +A G N YGQ G+        G ++ R   +  + +  L
Sbjct: 575 KIKAVSAGDYYTIILKMDGTLWATGQNTYGQLGD--------GTLINRYTPVQVKASTTL 626

Query: 135 -----IVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRVQGL- 179
                 V  V+ G  H+++L ++G +W  G+ +      Q+         S P +V  + 
Sbjct: 627 NDFMTDVVAVSTGERHTMILKKDGTLWATGKNY----FGQLGLGSQEPDRSTPTQVTFMG 682

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT--LVDI 237
             V  ++ G  + + L++D  LWA G N YGQLG G T  R+ P+ V+  + L   + D+
Sbjct: 683 TDVAAVSTGHSYTMILKKDDTLWATGFNSYGQLGDGTTSNRTSPVQVKASTTLNDFMTDV 742

Query: 238 AA---GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG 294
           AA   G  H+  L  DG ++  GR   G+LG  D+ ++ +  P +V  + G D+  VS G
Sbjct: 743 AAVSTGDDHTMILKKDGTLWAIGRNYSGQLG--DDTQTDRSTPVQVTSM-GTDVAAVSAG 799

Query: 295 GTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL 354
           G H++ L +DG ++  G    G+LG         P++V       + +G GV      K 
Sbjct: 800 GNHTLILKKDGTLWVTGYNGFGQLGDSTTDNRNMPVQV-------KGSG-GVGFMTDVKA 851

Query: 355 VACGGRHTLAI 365
            + G  HT+ +
Sbjct: 852 ASAGMYHTMIL 862



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231
           V +  Q L ++K ++ G ++ + L+ DG LWA G N YGQLG G    R  P+ V+  + 
Sbjct: 566 VTLYAQWLVKIKAVSAGDYYTIILKMDGTLWATGQNTYGQLGDGTLINRYTPVQVKASTT 625

Query: 232 LT-----LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           L      +V ++ G  H+  L  DG ++  G+   G+LG G + +  +  P +V  + G 
Sbjct: 626 LNDFMTDVVAVSTGERHTMILKKDGTLWATGKNYFGQLGLG-SQEPDRSTPTQVTFM-GT 683

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           D+  VS G ++++ L +D  +++ G   +G+LG G       P++V
Sbjct: 684 DVAAVSTGHSYTMILKKDDTLWATGFNSYGQLGDGTTSNRTSPVQV 729


>gi|418719204|ref|ZP_13278404.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. UI 09149]
 gi|421094338|ref|ZP_15555056.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200801926]
 gi|410362760|gb|EKP13795.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200801926]
 gi|410744357|gb|EKQ93098.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. UI 09149]
          Length = 506

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 148/349 (42%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 193 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRA--AGNRQP---------- 230

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  +++   V  A G  H L +   G   A+G N  GQ G      D      
Sbjct: 231 ----PTLVPGINDA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNG--ANDLNADSF 282

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
             D   P        V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 283 SMD---PVAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQ-S 338

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  +G +++WG N  GQLG G +  P   P P Q L+
Sbjct: 339 TPVKVEGLSGIKQIANGRDHILALASNGRIYSWGLNASGQLGIGGNGSPNPTPNPTQILN 398

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
                 + AGG  S ++  +GEV GWG  G    L  G+ +      P K  ++  ++++
Sbjct: 399 ITNASSVWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNTLKVYEPNKA-VVGIDNVI 457

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+ AL  DG I+ +G    G LG    +   G P  V I +P
Sbjct: 458 HFGCGATHNFALLGDGEIYGWGWNFKGSLGRQDLQANWGAPNPVSIKLP 506



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 129/288 (44%), Gaps = 39/288 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+   + GG H   + + G  Y  G N +GQ G      D+       D+++
Sbjct: 122 EVNFYFGTKL---SAGGAHSGFLKN-GEVYTVGRNNFGQLGTGNSTGDE-----NNDVIV 172

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                  +    +     +S+ + + G V+TWG               P  P        
Sbjct: 173 KLNSISNIF--SIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQP 230

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-----PIPVQ 227
           P  V G+    + A G  H L L+ DG + A+G N  GQLG G     +      P+ V 
Sbjct: 231 PTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMDPVAVV 290

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAG 285
           GLS   ++ + AG  HS ALT++GEVY WGR ++G LG G    ++ +   P KV  L+G
Sbjct: 291 GLS--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSG 348

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             I Q++ G  H +AL  +G I+S+G    G+LG G     G P   P
Sbjct: 349 --IKQIANGRDHILALASNGRIYSWGLNASGQLGIGGN---GSPNPTP 391



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 50/324 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-----EEPERKDDTGRILR 121
           ++N++SN  I        + +A+   GR Y WG N  GQ G       P      G    
Sbjct: 173 KLNSISN--IFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN--- 227

Query: 122 RDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQI 170
                  R  P L+         A G  H+++L  +G V  +GQ           D+   
Sbjct: 228 -------RQPPTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNAD 280

Query: 171 SV---PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP----RSQP 223
           S    PV V GL  V  +  G+ H+ AL E+G ++ WG N+YG LG G        +S P
Sbjct: 281 SFSMDPVAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTP 340

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V+GLSG+    IA G  H  AL  +G +Y WG    G+LG G N  S    P    +L
Sbjct: 341 VKVEGLSGIK--QIANGRDHILALASNGRIYSWGLNASGQLGIGGNG-SPNPTPNPTQIL 397

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFG-RGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
              +   V  GGT S ++ ++G +  +G  G+   L  G   T        + +  P  A
Sbjct: 398 NITNASSVWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNT--------LKVYEPNKA 449

Query: 343 GDGVDRRWIAKLVACGGRHTLAIV 366
             G+D         CG  H  A++
Sbjct: 450 VVGIDN---VIHFGCGATHNFALL 470



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 27/240 (11%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQ 169
           R  + D  I Q+        +++AGG HS  L + G V+T G+            GD + 
Sbjct: 110 RFKKPDGTILQKEVNFYFGTKLSAGGAHSGFL-KNGEVYTVGRNNFGQLGTGNSTGD-EN 167

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP-------- 219
             V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P        
Sbjct: 168 NDVIVKLNSISNIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN 227

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMV 276
           R  P  V G++   +   A G  H+  L  DG V  +G+   G+LG G ND    S  M 
Sbjct: 228 RQPPTLVPGINDAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMD 285

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P  V ++   D++QV  G  HS ALT +G ++ +GR  +G LG GR          P+ +
Sbjct: 286 P--VAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKV 343


>gi|332243760|ref|XP_003271040.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Nomascus
           leucogenys]
          Length = 814

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVTNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG +H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETS-DPKVIENIRDQTISYISCGESHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    +    R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNF--SRFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 36/301 (11%)

Query: 77  VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL-- 134
           V  + G  H   V    + Y +G N +GQ G           +  +  V    C   L  
Sbjct: 38  VHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG-----------LGSKSAVSKPTCVKALKP 86

Query: 135 -IVRQVAAGGTHSVVLTREGHVWTWG----QPWPPGDIKQ---ISVPVRVQGLEQVKLIA 186
             V+  A G  H++V T  G+V+  G         GD ++     V        ++K ++
Sbjct: 87  EKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLS 146

Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
            G+  + AL EDG L+ WG+N  GQ+G  +    +  +P Q   G  +  I+ G +HS  
Sbjct: 147 AGSNTSAALTEDGRLFMWGDNSEGQIGLKNV--TNVCVPQQVTIGKPVSWISCGYYHSAF 204

Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
           +T DGE+Y +G  E+G+LG  +    +   PQ V+ +  E ++QV+CGG H+V LT +  
Sbjct: 205 VTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSEIP-EKVIQVACGGEHTVVLTENA- 262

Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           +++FG G  G+LG G  +      +V  NI           R      ++CG  HT  I 
Sbjct: 263 VYTFGLGQFGQLGLGTFLFETSDPKVIENI-----------RDQTISYISCGESHTALIT 311

Query: 367 E 367
           +
Sbjct: 312 D 312



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAVSKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
              K+ T      ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P       P
Sbjct: 174 --LKNVT------NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLP 225

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRS 221
              +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G      S
Sbjct: 226 NQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFETS 284

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
            P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P   +
Sbjct: 285 DPKVIENIRDQTISYISCGESHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCS 344

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
             +   +  V+CGG H V  
Sbjct: 345 NFSRFIVKLVACGGCHMVVF 364



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAEDNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAVSK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122


>gi|432889733|ref|XP_004075335.1| PREDICTED: RCC1 and BTB domain-containing protein 2-like [Oryzias
           latipes]
          Length = 527

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 122/240 (50%), Gaps = 22/240 (9%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL---EQVKLI 185
           K IV      G H V+ T +G V+ WG         G       P  V      ++V  +
Sbjct: 74  KKIVSLSYGTGPHVVIATADGEVFAWGHNGYSQLGNGTTNHGLTPALVSTNLLGKRVTEV 133

Query: 186 AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHS 244
           A G+ H +AL  DG ++AWG N  GQ+G+G T  +  P  V   L    +V++  G   S
Sbjct: 134 ACGSHHTIALTADGEVFAWGYNNSGQVGSGSTANQPTPRRVSSCLQSKVVVNVGCGQLCS 193

Query: 245 TALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
            A+ D+GE+YGWG   +G+LG G+N   ++  P ++  L G ++VQV+CG  H++ALT +
Sbjct: 194 MAVLDNGEIYGWGYNCNGQLGLGNN--GNQQTPCRIAALQGVNVVQVACGYAHTLALTDE 251

Query: 305 GHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           G ++++G   +G+LG G K  + Q +   IN           D+  + ++ AC   HT A
Sbjct: 252 GFVYAWGANSYGQLGTGNK--SNQALPTLIN----------TDKERMVEVAACHTSHTSA 299



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 20/258 (7%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ L   KIV  + G G H +     G  +AWG N Y Q G        T  ++  +
Sbjct: 65  PRRIDVLCGKKIVSLSYGTGPHVVIATADGEVFAWGHNGYSQLGNGTTNHGLTPALVSTN 124

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL 179
           ++  +       V +VA G  H++ LT +G V+ WG         G       P RV   
Sbjct: 125 LLGKR-------VTEVACGSHHTIALTADGEVFAWGYNNSGQVGSGSTANQPTPRRVSSC 177

Query: 180 EQVKLIA---VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q K++     G   ++A+ ++G ++ WG N  GQLG G+   +  P  +  L G+ +V 
Sbjct: 178 LQSKVVVNVGCGQLCSMAVLDNGEIYGWGYNCNGQLGLGNNGNQQTPCRIAALQGVNVVQ 237

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV-SCGG 295
           +A G  H+ ALTD+G VY WG   +G+LG G  +KS++ +P  +N    E +V+V +C  
Sbjct: 238 VACGYAHTLALTDEGFVYAWGANSYGQLGTG--NKSNQALPTLIN-TDKERMVEVAACHT 294

Query: 296 TH-SVALTRDGHIFSFGR 312
           +H S A T+ G +  +G+
Sbjct: 295 SHTSAAKTQSGQVLMWGQ 312



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 26/245 (10%)

Query: 135 IVRQVAAGGT---HSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLEQVKLIAV 187
           ++RQ    G+    ++ +T    V+  G         GD++    P R+  L   K++++
Sbjct: 20  LIRQACVFGSAANEALYVTVNDEVFALGTNCSGCLGLGDLQSTIEPRRIDVLCGKKIVSL 79

Query: 188 G---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ-GLSGLTLVDIAAGGWH 243
                 H +    DG ++AWG+N Y QLG G T     P  V   L G  + ++A G  H
Sbjct: 80  SYGTGPHVVIATADGEVFAWGHNGYSQLGNGTTNHGLTPALVSTNLLGKRVTEVACGSHH 139

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALT 302
           + ALT DGEV+ WG    G++G G    +++  P++V+  L  + +V V CG   S+A+ 
Sbjct: 140 TIALTADGEVFAWGYNNSGQVGSGST--ANQPTPRRVSSCLQSKVVVNVGCGQLCSMAVL 197

Query: 303 RDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHT 362
            +G I+ +G   +G+LG G       P  +         A  GV+       VACG  HT
Sbjct: 198 DNGEIYGWGYNCNGQLGLGNNGNQQTPCRIA--------ALQGVN----VVQVACGYAHT 245

Query: 363 LAIVE 367
           LA+ +
Sbjct: 246 LALTD 250



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   +  +  P  ++ + Q  +    A   L +  +  ++A G N  G LG GD Q   
Sbjct: 7   WP---VFALLPPEELRLIRQACVFGSAANEALYVTVNDEVFALGTNCSGCLGLGDLQSTI 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  L G  +V ++ G G H    T DGEV+ WG   + +LG G  +          
Sbjct: 64  EPRRIDVLCGKKIVSLSYGTGPHVVIATADGEVFAWGHNGYSQLGNGTTNHGLTPALVST 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL G+ + +V+CG  H++ALT DG +F++G  + G++G G             N P PR
Sbjct: 124 NLL-GKRVTEVACGSHHTIALTADGEVFAWGYNNSGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                +  + +   V CG   ++A+++
Sbjct: 173 RVSSCLQSKVVVN-VGCGQLCSMAVLD 198



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 26/172 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G+   +     V   L+   V +V  G   S+A+ D+G+       
Sbjct: 149 VFAWGYNNSGQVGSGSTANQPTPRRVSSCLQSKVVVNVGCGQLCSMAVLDNGEIYGWGYN 208

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P ++ AL    +VQ A G  H LA+ D+G  YAWG N YGQ G  
Sbjct: 209 CNGQLGLGNNGNQQTPCRIAALQGVNVVQVACGYAHTLALTDEGFVYAWGANSYGQLGTG 268

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
            +       ++  D         + +V   A   +H S   T+ G V  WGQ
Sbjct: 269 NKSNQALPTLINTD--------KERMVEVAACHTSHTSAAKTQSGQVLMWGQ 312


>gi|392942766|ref|ZP_10308408.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Frankia
           sp. QA3]
 gi|392286060|gb|EIV92084.1| RCC1 domain-containing protein, alpha-tubulin suppressor [Frankia
           sp. QA3]
          Length = 406

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/249 (36%), Positives = 124/249 (49%), Gaps = 29/249 (11%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  +AWG N  GQ G               D V+P R A    VR +AAGG     L R
Sbjct: 98  DGTVWAWGLNNVGQLGNGTTT----------DSVVPVRVAGLTHVRAIAAGGGGGYALRR 147

Query: 152 EGHVWTWGQPWPPGDIKQIS--------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203
           +G VW WG       + Q+         VPVRV GL  V+ IA G+F   AL+ DG +WA
Sbjct: 148 DGTVWAWGL----NGVGQLGNNTTTDSVVPVRVTGLTDVRAIAAGSFSGYALRRDGTVWA 203

Query: 204 WGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
           WG N  G+LG G T     P+ V GL+ +  + +  GG +  AL  DG V+ WGR   G+
Sbjct: 204 WGLNGDGRLGNGTTTTSLLPVLVPGLTDVRAIAVGDGGGY--ALRWDGTVWAWGRNNVGQ 261

Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRK 323
           LG   N  ++ +VP  V  L   D+  ++ G +   AL  DG ++++GR + G+LG G  
Sbjct: 262 LG---NGTTTSLVPVPVPGL--TDVRAIAAGASSGYALRWDGTVWAWGRNNVGQLGNGTT 316

Query: 324 VTTGQPMEV 332
            T+  P+ V
Sbjct: 317 TTSLVPVPV 325



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 152/349 (43%), Gaps = 41/349 (11%)

Query: 9   AWGSGEDGQLG---IGNNEEREWVCVVKALEPYKVR--------------SVVAGSRNSL 51
           AWG    GQLG   I N+     V     L   +                +V A   N++
Sbjct: 50  AWGFNGGGQLGNGTIANSSIPVPVTGATGLTGLRAIAAGGGGGYALRRDGTVWAWGLNNV 109

Query: 52  AICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
               +G T    +P +V  L++ + + A  GG + L  D  G  +AWG N  GQ G    
Sbjct: 110 GQLGNGTTTDSVVPVRVAGLTHVRAIAAGGGGGYALRRD--GTVWAWGLNGVGQLGNNTT 167

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDI 167
                      D V+P R      VR +AAG      L R+G VW WG         G  
Sbjct: 168 ----------TDSVVPVRVTGLTDVRAIAAGSFSGYALRRDGTVWAWGLNGDGRLGNGTT 217

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
               +PV V GL  V+ IAVG     AL+ DG +WAWG N  GQLG G T     P+PV 
Sbjct: 218 TTSLLPVLVPGLTDVRAIAVGDGGGYALRWDGTVWAWGRNNVGQLGNGTTTSL-VPVPVP 276

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
           GL+ +    IAAG     AL  DG V+ WGR   G+LG G    ++ +VP  V+   G  
Sbjct: 277 GLTDVRA--IAAGASSGYALRWDGTVWAWGRNNVGQLGNG--TTTTSLVPVPVSGTTGLI 332

Query: 288 IVQVSCGGTHSVALTR-DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
                 GG       R DG ++++G  + G+LG G   TT   + VP++
Sbjct: 333 GATAIAGGGGGGYALRWDGTVWAWGLNNVGQLGNG--TTTDSVVPVPVS 379



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 123/296 (41%), Gaps = 42/296 (14%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR----------------SVVAGSRN 49
           ++ AWG    GQLG G   +   V  V+      VR                +V A   N
Sbjct: 100 TVWAWGLNNVGQLGNGTTTDS--VVPVRVAGLTHVRAIAAGGGGGYALRRDGTVWAWGLN 157

Query: 50  SLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
            +    +  T    +P +V  L++ + + A  G +   A+   G  +AWG N  G+ G  
Sbjct: 158 GVGQLGNNTTTDSVVPVRVTGLTDVRAIAA--GSFSGYALRRDGTVWAWGLNGDGRLGNG 215

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                          ++P        VR +A G      L  +G VW WG+     ++ Q
Sbjct: 216 TTTTS----------LLPVLVPGLTDVRAIAVGDGGGYALRWDGTVWAWGR----NNVGQ 261

Query: 170 IS-------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
           +        VPV V GL  V+ IA GA    AL+ DG +WAWG N  GQLG G T     
Sbjct: 262 LGNGTTTSLVPVPVPGLTDVRAIAAGASSGYALRWDGTVWAWGRNNVGQLGNGTTTTSLV 321

Query: 223 PIPVQGLSGL-TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVP 277
           P+PV G +GL     IA GG    AL  DG V+ WG    G+LG G    S   VP
Sbjct: 322 PVPVSGTTGLIGATAIAGGGGGGYALRWDGTVWAWGLNNVGQLGNGTTTDSVVPVP 377



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 108/257 (42%), Gaps = 46/257 (17%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++ AWG    GQLG  NN   + V  V+      VR++ AGS +  A+  DG        
Sbjct: 150 TVWAWGLNGVGQLG--NNTTTDSVVPVRVTGLTDVRAIAAGSFSGYALRRDGTVWAWGLN 207

Query: 59  ---------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    T T  +P  V  L++ + +    GG + L  D  G  +AWG N  GQ G  
Sbjct: 208 GDGRLGNGTTTTSLLPVLVPGLTDVRAIAVGDGGGYALRWD--GTVWAWGRNNVGQLGNG 265

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQ 169
                          ++P        VR +AAG +    L  +G VW WG+     ++ Q
Sbjct: 266 TTTS-----------LVPVPVPGLTDVRAIAAGASSGYALRWDGTVWAWGR----NNVGQ 310

Query: 170 IS--------VPVRVQG---LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218
           +         VPV V G   L     IA G     AL+ DG +WAWG N  GQLG G T 
Sbjct: 311 LGNGTTTTSLVPVPVSGTTGLIGATAIAGGGGGGYALRWDGTVWAWGLNNVGQLGNGTTT 370

Query: 219 PRSQPIPVQGLSGLTLV 235
               P+PV G++  T +
Sbjct: 371 DSVVPVPVSGITSATAI 387


>gi|148908280|gb|ABR17254.1| unknown [Picea sitchensis]
          Length = 286

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 116/204 (56%), Gaps = 9/204 (4%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV--GA 189
           V  ++AG +H+V L     V +WG+        GD +   +P  V  L+  ++ +V  GA
Sbjct: 16  VLLISAGASHTVALVAGNLVCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICGA 75

Query: 190 FHNLALQEDG-ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALT 248
            H  A  +    +++WG  ++G+LG G++     P  ++ L GL +  IA G  H  A+T
Sbjct: 76  DHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQGLQIKQIACGDSHCLAVT 135

Query: 249 DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIF 308
            +GEV  WGR ++G+LG GDN   S   PQ+V L A E++VQVSCG  H+VA+T   ++F
Sbjct: 136 INGEVQSWGRNQNGQLGVGDNIDHS--FPQRVKLPAEEEVVQVSCGWRHTVAITGKSNVF 193

Query: 309 SFGRGDHGRLGYGRKVTTGQPMEV 332
           S+GRG  G+LG+G  +    P+ +
Sbjct: 194 SWGRGTSGQLGHGDILDRNMPVLI 217



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 97/187 (51%), Gaps = 15/187 (8%)

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG 240
           +V LI+ GA H +AL     + +WG  E GQLG GD + R  P  V  L G  +  +  G
Sbjct: 15  KVLLISAGASHTVALVAGNLVCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICG 74

Query: 241 GWHSTALTDDG-EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSV 299
             H+TA +D    VY WG G+ GRLG G++  S   +P  +  L G  I Q++CG +H +
Sbjct: 75  ADHTTAYSDSRLVVYSWGWGDFGRLGHGNS--SDLFIPHAIKTLQGLQIKQIACGDSHCL 132

Query: 300 ALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359
           A+T +G + S+GR  +G+LG G  +    P  V   +PA                V+CG 
Sbjct: 133 AVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRV--KLPAEEE----------VVQVSCGW 180

Query: 360 RHTLAIV 366
           RHT+AI 
Sbjct: 181 RHTVAIT 187



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 53/232 (22%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           + +WG GEDGQLG G+ E+R     V AL+  ++ SV+ G+ ++                
Sbjct: 35  VCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICGADHT---------------- 78

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
              A S++++V                  Y+WG  ++G+ G               D+ I
Sbjct: 79  --TAYSDSRLV-----------------VYSWGWGDFGRLGHGNSS----------DLFI 109

Query: 127 PQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ--G 178
           P   +    L ++Q+A G +H + +T  G V +WG+        GD    S P RV+   
Sbjct: 110 PHAIKTLQGLQIKQIACGDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPA 169

Query: 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230
            E+V  ++ G  H +A+     +++WG    GQLG GD   R+ P+ ++ LS
Sbjct: 170 EEEVVQVSCGWRHTVAITGKSNVFSWGRGTSGQLGHGDILDRNMPVLIEALS 221



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 75  KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKL 134
           K++  + G  H +A+       +WG  E GQ G      D   R +   +     C    
Sbjct: 15  KVLLISAGASHTVALVAGNLVCSWGRGEDGQLG----HGDAEDRPMPTFVSALDGCE--- 67

Query: 135 IVRQVAAGGTHSVVLTREGHV---WTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIAV 187
            +  V  G  H+   +    V   W WG       G+   + +P  ++ L+  Q+K IA 
Sbjct: 68  -ITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGNSSDLFIPHAIKTLQGLQIKQIAC 126

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G  H LA+  +G + +WG N+ GQLG GD    S P  V+  +   +V ++ G  H+ A+
Sbjct: 127 GDSHCLAVTINGEVQSWGRNQNGQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAI 186

Query: 248 TDDGEVYGWGRGEHGRLGFGD 268
           T    V+ WGRG  G+LG GD
Sbjct: 187 TGKSNVFSWGRGTSGQLGHGD 207


>gi|421113392|ref|ZP_15573836.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. JET]
 gi|410801166|gb|EKS07340.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           santarosai str. JET]
          Length = 506

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 157/367 (42%), Gaps = 42/367 (11%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK-VRSVVAGSRNSLAICDDGKTKT--E 62
           ++   G    GQLG G++       V+  L+  + + S+     NS+AI  +G+  T   
Sbjct: 147 NVYTVGRNNFGQLGTGHSTGDNNNDVIVLLDSIRDIFSIHFNQNNSMAIAKNGRVYTWGN 206

Query: 63  NIPSQV--------------NALSNTKI------VQAAIGGWHCLAVDDQGRAYAWGGNE 102
           N   Q+              + L  T +      V  A G  H L +   G   ++G N 
Sbjct: 207 NAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMGAYGFNHALILKSDGTLVSFGQNN 266

Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP- 161
            GQ G      +          V+  R      V QV AG  HS  LT  G V+ WG+  
Sbjct: 267 VGQLGNGEVNLNVNSFSTNPVAVVNLRD-----VIQVIAGSEHSAALTENGEVYVWGKNQ 321

Query: 162 --------WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
                       +  Q S PV+V+GL  +K IA G  H LAL  DG +++WG N  GQLG
Sbjct: 322 YGNLGNGRLSAANTVQ-STPVKVEGLSGIKQIANGRDHILALASDGKIYSWGLNASGQLG 380

Query: 214 TGDT-QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDK 271
            G +  P   PIP Q L+      + AGG  S ++   GEV GWG  G    L  G+ + 
Sbjct: 381 IGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGEVKGWGANGNTANLAIGETNT 440

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPM 330
           S    P K  ++  E+++   CG TH+ AL  +G I+ +G    G LG     +  G P 
Sbjct: 441 SKVYEPNKA-VVGIENVIHFGCGATHNFALLGNGEIYGWGWNFKGSLGRQDLQSNWGAPN 499

Query: 331 EVPINIP 337
            V I +P
Sbjct: 500 PVSITLP 506



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 37/264 (14%)

Query: 92  QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151
            G  Y  G N +GQ G      D+       D+++       +    +     +S+ + +
Sbjct: 145 NGNVYTVGRNNFGQLGTGHSTGDN-----NNDVIVLLDSIRDIF--SIHFNQNNSMAIAK 197

Query: 152 EGHVWTWGQPWPPGDIKQISV----------------PVRVQGLEQVKLIAVGAFHNLAL 195
            G V+TWG         Q+ +                P  V G++   + A G  H L L
Sbjct: 198 NGRVYTWGNNAK----GQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMGAYGFNHALIL 253

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPI---PVQGLSGLTLVDIAAGGWHSTALTDDGE 252
           + DG L ++G N  GQLG G+           PV  ++   ++ + AG  HS ALT++GE
Sbjct: 254 KSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAALTENGE 313

Query: 253 VYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           VY WG+ ++G LG G    ++ +   P KV  L+G  I Q++ G  H +AL  DG I+S+
Sbjct: 314 VYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSG--IKQIANGRDHILALASDGKIYSW 371

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPI 334
           G    G+LG G    +G P   PI
Sbjct: 372 GLNASGQLGIG---GSGFPNPTPI 392



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 21/216 (9%)

Query: 138 QVAAGGTHSVVLTREGHVWTWGQP--------WPPGDIKQISVPVRVQGLEQVKLIAVGA 189
           +++AG  HS  L + G+V+T G+            GD     V V +  +  +  I    
Sbjct: 132 KLSAGAAHSGFL-KNGNVYTVGRNNFGQLGTGHSTGDNNN-DVIVLLDSIRDIFSIHFNQ 189

Query: 190 FHNLALQEDGALWAWGNNEYGQLGTG--------DTQPRSQPIPVQGLSGLTLVDIAAGG 241
            +++A+ ++G ++ WGNN  GQLG G        +   R  P  V G+    +   A G 
Sbjct: 190 NNSMAIAKNGRVYTWGNNAKGQLGIGNNNNPNPKEAGDRLPPTLVPGIDDAVMG--AYGF 247

Query: 242 WHSTALTDDGEVYGWGRGEHGRLGFGD-NDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            H+  L  DG +  +G+   G+LG G+ N   +      V ++   D++QV  G  HS A
Sbjct: 248 NHALILKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRDVIQVIAGSEHSAA 307

Query: 301 LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           LT +G ++ +G+  +G LG GR          P+ +
Sbjct: 308 LTENGEVYVWGKNQYGNLGNGRLSAANTVQSTPVKV 343



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 106/261 (40%), Gaps = 47/261 (18%)

Query: 1   MASTTSIIAWGSGEDGQLGIG------NNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S  +++++G    GQLG G      N+     V VV   +   V  V+AGS +S A+ 
Sbjct: 253 LKSDGTLVSFGQNNVGQLGNGEVNLNVNSFSTNPVAVVNLRD---VIQVIAGSEHSAALT 309

Query: 55  DDGK--------------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGR 94
           ++G+                       ++ P +V  LS  K  Q A G  H LA+   G+
Sbjct: 310 ENGEVYVWGKNQYGNLGNGRLSAANTVQSTPVKVEGLSGIK--QIANGRDHILALASDGK 367

Query: 95  AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154
            Y+WG N  GQ G         G        IP +         V AGGT S  + + G 
Sbjct: 368 IYSWGLNASGQLG-------IGGSGFPNPTPIPTQVLNITNASSVWAGGTQSFSILKSGE 420

Query: 155 VWTWGQPWPPGDI-------KQISVPVR-VQGLEQVKLIAVGAFHNLALQEDGALWAWGN 206
           V  WG      ++        ++  P + V G+E V     GA HN AL  +G ++ WG 
Sbjct: 421 VKGWGANGNTANLAIGETNTSKVYEPNKAVVGIENVIHFGCGATHNFALLGNGEIYGWGW 480

Query: 207 NEYGQLGTGDTQPR-SQPIPV 226
           N  G LG  D Q     P PV
Sbjct: 481 NFKGSLGRQDLQSNWGAPNPV 501


>gi|162450118|ref|YP_001612485.1| BNR repeat-containing protein [Sorangium cellulosum So ce56]
 gi|161160700|emb|CAN92005.1| BNR repeat domain protein [Sorangium cellulosum So ce56]
          Length = 1462

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 142/335 (42%), Gaps = 58/335 (17%)

Query: 49   NSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
            NS     DG T       Q  AL    IV  A G  H LA+   GR  AWG +   Q   
Sbjct: 785  NSYGQLGDGTTADRATHPQ--ALGLQGIVAIAAGKRHSLALRGDGRVLAWGDDSAAQLSN 842

Query: 109  EPERKDDTGRILRRDIVI---------------------------------PQRCA---- 131
               R  + G   R++ V                                  P RC+    
Sbjct: 843  GAARTPN-GFKPRKNTVFEWPTAPPWPPARRSTGTLPCTPARKSGDLLSLQPVRCSNSTL 901

Query: 132  -PKLI-----VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQ 181
             P L+     +  +  G  HS+ L ++G VW WG         G  K   VPV++  L  
Sbjct: 902  SPALVPMLDRITAIVTGEEHSLALRQDGTVWAWGNNGNGQLGVGTAKASQVPVKIPTLNG 961

Query: 182  VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG 241
            V  IA GA H+LA++ DG +WAWGNN +GQLG G T  RS+P+ V  L    ++ +A G 
Sbjct: 962  VTAIAAGANHSLAVRGDGTVWAWGNNAHGQLGDGTTSQRSEPVQVSELG--QVLRVAGGT 1019

Query: 242  WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             HS AL  DG V+ +G   HG+LG      S + +   V+ ++      V+CGG  S  L
Sbjct: 1020 GHSLALKADGTVWAFGSNSHGQLGV-STSTSQRSIAAPVSGISHAS--AVACGGNSSAVL 1076

Query: 302  TRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
               G I ++G    G+LG G     GQ   +P  +
Sbjct: 1077 LPTGDIRTWGENSKGQLGDG---VLGQARFLPTGV 1108



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 153/336 (45%), Gaps = 45/336 (13%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
            ++ AWG+  +GQLG+G  +  +    +  L    V ++ AG+ +SLA+            
Sbjct: 930  TVWAWGNNGNGQLGVGTAKASQVPVKIPTLN--GVTAIAAGANHSLAVRGDGTVWAWGNN 987

Query: 54   ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                  DG T   + P QV+ L   ++++ A G  H LA+   G  +A+G N +GQ G  
Sbjct: 988  AHGQLGDGTTSQRSEPVQVSELG--QVLRVAGGTGHSLALKADGTVWAFGSNSHGQLGVS 1045

Query: 110  PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PG 165
                       +R I  P           VA GG  S VL   G + TWG+        G
Sbjct: 1046 TSTS-------QRSIAAPVSGISH--ASAVACGGNSSAVLLPTGDIRTWGENSKGQLGDG 1096

Query: 166  DIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ----LGTGDTQPR 220
             + Q   +P  V+G    + +A+ + H L  ++DG + AWG + YG+    LG+G    R
Sbjct: 1097 VLGQARFLPTGVRGAFDSQTVAM-SLHTLVARKDGTIDAWGRDHYGEAGDFLGSG---AR 1152

Query: 221  SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            ++P  + G+S   +  +A G   S AL  DG V+ WG    G LG G    S    P  +
Sbjct: 1153 TEPKRIPGIS--RVRSVAVGDRWSMALRKDGSVWTWGISSWGVLGDGKGCDSDFAYPGPL 1210

Query: 281  NLLAG-EDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
            N +A   DI+Q+S    +  AL +DG ++ +G   +
Sbjct: 1211 NQVAALSDIIQISASLYNGYALKKDGTVWGWGFNSY 1246



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 163/420 (38%), Gaps = 104/420 (24%)

Query: 6    SIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--E 62
            ++ A+GS   GQLG+  +  +R     V  +      +V  G  +S  +   G  +T  E
Sbjct: 1030 TVWAFGSNSHGQLGVSTSTSQRSIAAPVSGIS--HASAVACGGNSSAVLLPTGDIRTWGE 1087

Query: 63   N---------------IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
            N               +P+ V    +++ V  ++   H L     G   AWG + YG+ G
Sbjct: 1088 NSKGQLGDGVLGQARFLPTGVRGAFDSQTVAMSL---HTLVARKDGTIDAWGRDHYGEAG 1144

Query: 108  EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG-QPW---- 162
                  D  G   R +   P+R      VR VA G   S+ L ++G VWTWG   W    
Sbjct: 1145 ------DFLGSGARTE---PKRIPGISRVRSVAVGDRWSMALRKDGSVWTWGISSWGVLG 1195

Query: 163  ----------PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                       PG + Q++       L  +  I+   ++  AL++DG +W WG N Y Q 
Sbjct: 1196 DGKGCDSDFAYPGPLNQVAA------LSDIIQISASLYNGYALKKDGTVWGWGFNSYYQ- 1248

Query: 213  GTGDTQPRSQPIPVQGLSGLTLVD------------------------------------ 236
              GD +P  +P P+ GLS +  +D                                    
Sbjct: 1249 ELGD-RPGCEPAPIPGLSDIVAIDAGDRFGLALKKDGTLWGWGLGGRGYVDPLYFRSPAQ 1307

Query: 237  ---------IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287
                       AG   S A+T DG+++ WG   +G+LG       +    + V++     
Sbjct: 1308 FENLKNVVRFGAGTDSSAAVTADGKIWTWGANYYGQLGIA----GASYYTEPVDIHDQSG 1363

Query: 288  IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVD 347
             + VS G  H + +  DG ++ +G    G+LG G   T   P+ +  +I A +    GV+
Sbjct: 1364 FIDVSVGDWHVLGIKADGTVWGWGHNGGGQLGDGTTQTRSTPVLLLSSIAAAKVYAMGVN 1423



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 60/335 (17%)

Query: 34   ALEPY--KVRSVVAGSRNSLAICDDGKT----------------KTENIPSQVNALSNTK 75
            AL P   ++ ++V G  +SLA+  DG                  K   +P ++  L+   
Sbjct: 904  ALVPMLDRITAIVTGEEHSLALRQDGTVWAWGNNGNGQLGVGTAKASQVPVKIPTLNGVT 963

Query: 76   IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-------EPERKDDTGRILRRDIVIPQ 128
             + A  G  H LAV   G  +AWG N +GQ G+       EP +  + G++LR       
Sbjct: 964  AIAA--GANHSLAVRGDGTVWAWGNNAHGQLGDGTTSQRSEPVQVSELGQVLR------- 1014

Query: 129  RCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEQVK 183
                      VA G  HS+ L  +G VW +     GQ        Q S+   V G+    
Sbjct: 1015 ----------VAGGTGHSLALKADGTVWAFGSNSHGQLGVSTSTSQRSIAAPVSGISHAS 1064

Query: 184  LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDIAAGGW 242
             +A G   +  L   G +  WG N  GQLG G   Q R  P  V+G      V ++    
Sbjct: 1065 AVACGGNSSAVLLPTGDIRTWGENSKGQLGDGVLGQARFLPTGVRGAFDSQTVAMSL--- 1121

Query: 243  HSTALTDDGEVYGWGRGEHGRLG--FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
            H+     DG +  WGR  +G  G   G   ++    P+++  ++   +  V+ G   S+A
Sbjct: 1122 HTLVARKDGTIDAWGRDHYGEAGDFLGSGARTE---PKRIPGIS--RVRSVAVGDRWSMA 1176

Query: 301  LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
            L +DG ++++G    G LG G+   +      P+N
Sbjct: 1177 LRKDGSVWTWGISSWGVLGDGKGCDSDFAYPGPLN 1211



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 141/346 (40%), Gaps = 63/346 (18%)

Query: 6    SIIAWGSGEDGQ----LGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT 61
            +I AWG    G+    LG G   E + +  +      +VRSV  G R S+A+  DG   T
Sbjct: 1131 TIDAWGRDHYGEAGDFLGSGARTEPKRIPGIS-----RVRSVAVGDRWSMALRKDGSVWT 1185

Query: 62   ENIPS---------------------QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
              I S                     QV ALS+  I+Q +   ++  A+   G  + WG 
Sbjct: 1186 WGISSWGVLGDGKGCDSDFAYPGPLNQVAALSD--IIQISASLYNGYALKKDGTVWGWGF 1243

Query: 101  NEYGQ-CGEEPERKDDTGRILRRDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGH 154
            N Y Q  G+ P                   C P  I     +  + AG    + L ++G 
Sbjct: 1244 NSYYQELGDRPG------------------CEPAPIPGLSDIVAIDAGDRFGLALKKDGT 1285

Query: 155  VWTWGQPWPPG-DIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
            +W WG       D      P + + L+ V     G   + A+  DG +W WG N YGQLG
Sbjct: 1286 LWGWGLGGRGYVDPLYFRSPAQFENLKNVVRFGAGTDSSAAVTADGKIWTWGANYYGQLG 1345

Query: 214  TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273
                   ++P+ +   SG   +D++ G WH   +  DG V+GWG    G+LG    D ++
Sbjct: 1346 IAGASYYTEPVDIHDQSG--FIDVSVGDWHVLGIKADGTVWGWGHNGGGQLG----DGTT 1399

Query: 274  KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
            +     V LL+     +V   G +S+ +  +  +   G    G+LG
Sbjct: 1400 QTRSTPVLLLSSIAAAKVYAMGVNSLIMQTNRSLLGSGDNHAGQLG 1445



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 144/324 (44%), Gaps = 45/324 (13%)

Query: 6    SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-------- 57
            ++ AWG+   GQLG G   +R     V  L   +V  V  G+ +SLA+  DG        
Sbjct: 980  TVWAWGNNAHGQLGDGTTSQRSEPVQVSELG--QVLRVAGGTGHSLALKADGTVWAFGSN 1037

Query: 58   ---------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                      T   +I + V+ +S+   V  A GG     +   G    WG N  GQ G+
Sbjct: 1038 SHGQLGVSTSTSQRSIAAPVSGISHASAV--ACGGNSSAVLLPTGDIRTWGENSKGQLGD 1095

Query: 109  EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--PPGD 166
                      +L +   +P         + VA    H++V  ++G +  WG+      GD
Sbjct: 1096 G---------VLGQARFLPTGVRGAFDSQTVAMS-LHTLVARKDGTIDAWGRDHYGEAGD 1145

Query: 167  IK---QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQPRS 221
                   + P R+ G+ +V+ +AVG   ++AL++DG++W WG + +G LG G       +
Sbjct: 1146 FLGSGARTEPKRIPGISRVRSVAVGDRWSMALRKDGSVWTWGISSWGVLGDGKGCDSDFA 1205

Query: 222  QPIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P P+  ++ L+ ++ I+A  ++  AL  DG V+GWG   + +   GD        P  +
Sbjct: 1206 YPGPLNQVAALSDIIQISASLYNGYALKKDGTVWGWGFNSYYQ-ELGDRPGCE---PAPI 1261

Query: 281  NLLAGEDIVQVSCGGTHSVALTRD 304
              L+  DIV +  G    +AL +D
Sbjct: 1262 PGLS--DIVAIDAGDRFGLALKKD 1283



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 133/332 (40%), Gaps = 68/332 (20%)

Query: 56   DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
            DG   T+++   V  L   +    A+  W  +A    G  +AWG N  G  G  PE    
Sbjct: 688  DGDKGTDSMRLIVGPLPLNEQQTLAVAPWGMVATQTDGTLWAWGDNSQGTLG--PEASTT 745

Query: 116  TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQIS 171
                L  +I I +       V   AAGG H++ L   G VW+WG         G     +
Sbjct: 746  APGSLPVEIPITR------AVFGTAAGGAHALALDGAGVVWSWGDNSYGQLGDGTTADRA 799

Query: 172  VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT------QPRSQPI- 224
               +  GL+ +  IA G  H+LAL+ DG + AWG++   QL  G        +PR   + 
Sbjct: 800  THPQALGLQGIVAIAAGKRHSLALRGDGRVLAWGDDSAAQLSNGAARTPNGFKPRKNTVF 859

Query: 225  ---------------------------------PVQGLSGLTL-----------VDIAAG 240
                                             PV+  S  TL             I  G
Sbjct: 860  EWPTAPPWPPARRSTGTLPCTPARKSGDLLSLQPVR-CSNSTLSPALVPMLDRITAIVTG 918

Query: 241  GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300
              HS AL  DG V+ WG   +G+LG G    S   VP K+  L G  +  ++ G  HS+A
Sbjct: 919  EEHSLALRQDGTVWAWGNNGNGQLGVGTAKAS--QVPVKIPTLNG--VTAIAAGANHSLA 974

Query: 301  LTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            +  DG ++++G   HG+LG G      +P++V
Sbjct: 975  VRGDGTVWAWGNNAHGQLGDGTTSQRSEPVQV 1006



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 85/215 (39%), Gaps = 64/215 (29%)

Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
           G +W+WG+N YGQLG G T  R+      GL G  +V IAAG  HS AL  DG V  WG 
Sbjct: 777 GVVWSWGDNSYGQLGDGTTADRATHPQALGLQG--IVAIAAGKRHSLALRGDGRVLAWGD 834

Query: 259 GEHGRLGFGDNDKSSKMVPQKVNLLAG--------------------------------- 285
               +L  G     +   P+K  +                                    
Sbjct: 835 DSAAQLSNGAARTPNGFKPRKNTVFEWPTAPPWPPARRSTGTLPCTPARKSGDLLSLQPV 894

Query: 286 ---------------EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPM 330
                          + I  +  G  HS+AL +DG ++++G   +G+LG G    T +  
Sbjct: 895 RCSNSTLSPALVPMLDRITAIVTGEEHSLALRQDGTVWAWGNNGNGQLGVG----TAKAS 950

Query: 331 EVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           +VP+ IP      +GV        +A G  H+LA+
Sbjct: 951 QVPVKIPTL----NGV------TAIAAGANHSLAV 975


>gi|118373351|ref|XP_001019869.1| HECT domain and RCC1-like domain protein 3 [Tetrahymena
           thermophila]
 gi|89301636|gb|EAR99624.1| HECT domain and RCC1-like domain protein 3 [Tetrahymena thermophila
           SB210]
          Length = 403

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 29/296 (9%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P ++  L N  I + + G WHCLA+++Q + Y  G N+YG CG      +  G  L   
Sbjct: 101 VPQKIMNLQN--ISRVSCGNWHCLALNNQNQLYVTGHNKYGACGLYG-IDEINGFQLNDT 157

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK-----QISVPVRVQG 178
           I   Q C+       ++AG   S+ L     V++ G     G+ +     QI     ++G
Sbjct: 158 IKNIQICS-------ISAGDGFSLYLDINQQVYSSGFRQMHGNKEDQHQYQIKKIKELEG 210

Query: 179 LEQVKLIAVGAFHN-LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI 237
           +  +K I  G  H+ +  QE G ++ WG+ +Y QLG G+ Q + +P+ +  LSG+  V  
Sbjct: 211 IA-IKHINAGFCHSAVVTQERGEVYTWGSGDYYQLGHGNKQSQKKPLKINNLSGIEQVSC 269

Query: 238 AAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDN----DKSSKMVPQKVNLLAGEDIV-- 289
           + G    H+ A + DG+VY WG G  G+LG  ++    D + +  P+ +  L  + IV  
Sbjct: 270 SRGEKNCHTLATSSDGKVYSWGSGYKGKLGHQNSWSHEDPADESRPRPIQYLQEKGIVIA 329

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLGY----GRKVTTGQPMEVPINIPAPRN 341
           +   GG HS  L++DG +F+FG    GRLG+     R     +P+   I  P   N
Sbjct: 330 KSISGGIHSAVLSQDGRLFTFGCCSDGRLGHIKDEKRIYLYKEPLPREIQGPFLNN 385



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 19/246 (7%)

Query: 93  GRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152
           G  Y WG N  G    + E + +          IP +       + V+ GG     ++ +
Sbjct: 26  GFLYTWGLNTAGCLANQNEDQGEG---------IPFKVKTNQKFKSVSTGGFFGAAISSK 76

Query: 153 GHVWTWGQPWPPGDIKQ-----ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN 207
             ++TWG+     +  Q     I VP ++  L+ +  ++ G +H LAL     L+  G+N
Sbjct: 77  NELYTWGETKNSRNGHQANKNYILVPQKIMNLQNISRVSCGNWHCLALNNQNQLYVTGHN 136

Query: 208 EYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267
           +YG  G       +       +  + +  I+AG   S  L  + +VY  G     R   G
Sbjct: 137 KYGACGLYGIDEINGFQLNDTIKNIQICSISAGDGFSLYLDINQQVYSSGF----RQMHG 192

Query: 268 DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSFGRGDHGRLGYGRKVTT 326
           + +   +   +K+  L G  I  ++ G  HS  +T++ G ++++G GD+ +LG+G K + 
Sbjct: 193 NKEDQHQYQIKKIKELEGIAIKHINAGFCHSAVVTQERGEVYTWGSGDYYQLGHGNKQSQ 252

Query: 327 GQPMEV 332
            +P+++
Sbjct: 253 KKPLKI 258



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256
           +DG L+ WG N  G L     + + + IP +  +      ++ GG+   A++   E+Y W
Sbjct: 24  QDGFLYTWGLNTAGCLAN-QNEDQGEGIPFKVKTNQKFKSVSTGGFFGAAISSKNELYTW 82

Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
           G  ++ R G   N K+  +VPQK+  L  ++I +VSCG  H +AL     ++  G   +G
Sbjct: 83  GETKNSRNGHQAN-KNYILVPQKIMNL--QNISRVSCGNWHCLALNNQNQLYVTGHNKYG 139

Query: 317 RLG-YGRKVTTGQPMEVPI-NIP-APRNAGDGV 346
             G YG     G  +   I NI     +AGDG 
Sbjct: 140 ACGLYGIDEINGFQLNDTIKNIQICSISAGDGF 172


>gi|302803759|ref|XP_002983632.1| hypothetical protein SELMODRAFT_180358 [Selaginella moellendorffii]
 gi|300148469|gb|EFJ15128.1| hypothetical protein SELMODRAFT_180358 [Selaginella moellendorffii]
          Length = 863

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 133/279 (47%), Gaps = 35/279 (12%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  V +L    + Q A G  H   V  QG  ++WG    G+ G            +  D
Sbjct: 113 LPRAVRSLVVLDVQQIACGVRHTALVTRQGEVFSWGEESGGRLGHG----------VDAD 162

Query: 124 IVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP----GDIKQIS--VPVR 175
           +  PQ         V+ VA G  HS  +T+ G ++TWG         G    IS   P R
Sbjct: 163 VAHPQLIDSLASSTVQYVACGEYHSCAVTQSGDLYTWGDGTHNFGLLGHGNSISHWTPKR 222

Query: 176 VQG-LEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
           V G LE V++  +A G +H + +   G L+++G+  +G LG GD +  S P  V+ L GL
Sbjct: 223 VGGPLEGVRVSSVACGPWHTVLVTSTGQLFSFGDGTFGVLGHGDRKSASMPREVESLKGL 282

Query: 233 TLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             +  A G WH+ A+ +             G+++ WG G+  RLG GD  K  K+VP  V
Sbjct: 283 KTLRAACGPWHTAAVVEVMSRYSNAGSSLSGKLFTWGDGDKNRLGHGD--KEQKLVPTCV 340

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
             L   +  QV+CG + +VALT  GH+++ G   +G+LG
Sbjct: 341 AALVDHNFRQVACGHSLTVALTTTGHLYTMGSVSYGQLG 379



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 104/234 (44%), Gaps = 26/234 (11%)

Query: 153 GHVWTWGQPWPPGDI-KQISVPVRVQGLE----------QVKLIAVGAFHNLALQEDGAL 201
           G +W WG+    G + K++    R                V+ IA G  H   +   G +
Sbjct: 85  GELWMWGEGIGDGGVTKKLDTSFRTDAFLPRAVRSLVVLDVQQIACGVRHTALVTRQGEV 144

Query: 202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
           ++WG    G+LG G     + P  +  L+  T+  +A G +HS A+T  G++Y WG G H
Sbjct: 145 FSWGEESGGRLGHGVDADVAHPQLIDSLASSTVQYVACGEYHSCAVTQSGDLYTWGDGTH 204

Query: 262 GRLGFGDNDKSSKMVPQKV-NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGY 320
                G  +  S   P++V   L G  +  V+CG  H+V +T  G +FSFG G  G LG+
Sbjct: 205 NFGLLGHGNSISHWTPKRVGGPLEGVRVSSVACGPWHTVLVTSTGQLFSFGDGTFGVLGH 264

Query: 321 GRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKL-VACGGRHTLAIVEWQTEES 373
           G + +   P EV                + +  L  ACG  HT A+VE  +  S
Sbjct: 265 GDRKSASMPREVE-------------SLKGLKTLRAACGPWHTAAVVEVMSRYS 305



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 139/330 (42%), Gaps = 45/330 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT----- 61
           + +WG    G+LG G + +     ++ +L    V+ V  G  +S A+   G   T     
Sbjct: 144 VFSWGEESGGRLGHGVDADVAHPQLIDSLASSTVQYVACGEYHSCAVTQSGDLYTWGDGT 203

Query: 62  ENI-------------PSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
            N              P +V   L   ++   A G WH + V   G+ +++G   +G  G
Sbjct: 204 HNFGLLGHGNSISHWTPKRVGGPLEGVRVSSVACGPWHTVLVTSTGQLFSFGDGTFGVLG 263

Query: 108 EEPERKDDTGR---ILRRDIVIPQRCAP-------KLIVRQVAAGGTHSVVLTREGHVWT 157
               +     R    L+    +   C P       +++ R   AG + S      G ++T
Sbjct: 264 HGDRKSASMPREVESLKGLKTLRAACGPWHTAAVVEVMSRYSNAGSSLS------GKLFT 317

Query: 158 WG----QPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ 211
           WG         GD +Q  VP  V  L     + +A G    +AL   G L+  G+  YGQ
Sbjct: 318 WGDGDKNRLGHGDKEQKLVPTCVAALVDHNFRQVACGHSLTVALTTTGHLYTMGSVSYGQ 377

Query: 212 LGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           LG  D Q   +   V  L    + +++ G +H  ALT  G+V  WG+G +GRLG GD + 
Sbjct: 378 LG--DPQATGRLPGVLRLGRTLIEEVSCGAYHVAALTSKGDVCTWGKGANGRLGHGDAE- 434

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301
             + VP  V  L  + + +VSCG + + A+
Sbjct: 435 -DRDVPTLVEALRDKQVKKVSCGSSFTSAI 463



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S   +  WG G +G+LG G+ E+R+   +V+AL   +V+ V  GS  + AIC
Sbjct: 411 LTSKGDVCTWGKGANGRLGHGDAEDRDVPTLVEALRDKQVKKVSCGSSFTSAIC 464


>gi|456888932|gb|EMF99869.1| chromosome condensation regulator RCC1 repeat protein [Leptospira
           borgpetersenii str. 200701203]
          Length = 482

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 148/349 (42%), Gaps = 47/349 (13%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
           +A    +  WG+   GQLGIGNN             P   R+  AG+R            
Sbjct: 169 IAKNGRVYTWGNNAKGQLGIGNNNTN----------PANPRA--AGNRQP---------- 206

Query: 61  TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRIL 120
               P+ V  +++   V  A G  H L +   G   A+G N  GQ G      D      
Sbjct: 207 ----PTLVPGINDA--VMGAYGFNHALILKSDGTVVAFGQNNVGQLGNG--ANDLNADSF 258

Query: 121 RRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP---------WPPGDIKQIS 171
             D   P        V QV AG  HS  LT  G V+ WG+              +  Q S
Sbjct: 259 SMD---PVAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQ-S 314

Query: 172 VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLS 230
            PV+V+GL  +K IA G  H LAL  +G +++WG N  GQLG G +  P   P P Q L+
Sbjct: 315 TPVKVEGLSGIKQIANGRDHILALASNGRIYSWGLNASGQLGIGGNGSPNPTPNPTQILN 374

Query: 231 GLTLVDIAAGGWHSTALTDDGEVYGWG-RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
                 + AGG  S ++  +GEV GWG  G    L  G+ +      P K  ++  ++++
Sbjct: 375 ITNASSVWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNTLKVYEPNKA-VVGIDNVI 433

Query: 290 QVSCGGTHSVALTRDGHIFSFGRGDHGRLG-YGRKVTTGQPMEVPINIP 337
              CG TH+ AL  DG I+ +G    G LG    +   G P  V I +P
Sbjct: 434 HFGCGATHNFALLGDGEIYGWGWNFKGSLGRQDLQANWGAPNPVSIKLP 482



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 129/288 (44%), Gaps = 39/288 (13%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +VN    TK+   + GG H   + + G  Y  G N +GQ G      D+       D+++
Sbjct: 98  EVNFYFGTKL---SAGGAHSGFLKN-GEVYTVGRNNFGQLGTGNSTGDE-----NNDVIV 148

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--------------PWPPGDIKQISV 172
                  +    +     +S+ + + G V+TWG               P  P        
Sbjct: 149 KLNSISNIF--SIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGNRQP 206

Query: 173 PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-----PIPVQ 227
           P  V G+    + A G  H L L+ DG + A+G N  GQLG G     +      P+ V 
Sbjct: 207 PTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMDPVAVV 266

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM--VPQKVNLLAG 285
           GLS   ++ + AG  HS ALT++GEVY WGR ++G LG G    ++ +   P KV  L+G
Sbjct: 267 GLS--DVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKVEGLSG 324

Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
             I Q++ G  H +AL  +G I+S+G    G+LG G     G P   P
Sbjct: 325 --IKQIANGRDHILALASNGRIYSWGLNASGQLGIGGN---GSPNPTP 367



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 50/324 (15%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG-----EEPERKDDTGRILR 121
           ++N++SN  I        + +A+   GR Y WG N  GQ G       P      G    
Sbjct: 149 KLNSISN--IFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN--- 203

Query: 122 RDIVIPQRCAPKLI-----VRQVAAGGTHSVVLTREGHVWTWGQPWP------PGDIKQI 170
                  R  P L+         A G  H+++L  +G V  +GQ           D+   
Sbjct: 204 -------RQPPTLVPGINDAVMGAYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNAD 256

Query: 171 SV---PVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP----RSQP 223
           S    PV V GL  V  +  G+ H+ AL E+G ++ WG N+YG LG G        +S P
Sbjct: 257 SFSMDPVAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTP 316

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           + V+GLSG+    IA G  H  AL  +G +Y WG    G+LG G N  S    P    +L
Sbjct: 317 VKVEGLSGIK--QIANGRDHILALASNGRIYSWGLNASGQLGIGGNG-SPNPTPNPTQIL 373

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFG-RGDHGRLGYGRKVTTGQPMEVPINIPAPRNA 342
              +   V  GGT S ++ ++G +  +G  G+   L  G   T        + +  P  A
Sbjct: 374 NITNASSVWAGGTQSFSILKNGEVKGWGANGNTANLAIGETNT--------LKVYEPNKA 425

Query: 343 GDGVDRRWIAKLVACGGRHTLAIV 366
             G+D         CG  H  A++
Sbjct: 426 VVGIDN---VIHFGCGATHNFALL 446



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 27/240 (11%)

Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW--------PPGDIKQ 169
           R  + D  I Q+        +++AGG HS  L + G V+T G+            GD + 
Sbjct: 86  RFKKPDGTILQKEVNFYFGTKLSAGGAHSGFL-KNGEVYTVGRNNFGQLGTGNSTGD-EN 143

Query: 170 ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--TQP-------- 219
             V V++  +  +  I     +++A+ ++G ++ WGNN  GQLG G+  T P        
Sbjct: 144 NDVIVKLNSISNIFSIHFNQNNSMAIAKNGRVYTWGNNAKGQLGIGNNNTNPANPRAAGN 203

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMV 276
           R  P  V G++   +   A G  H+  L  DG V  +G+   G+LG G ND    S  M 
Sbjct: 204 RQPPTLVPGINDAVMG--AYGFNHALILKSDGTVVAFGQNNVGQLGNGANDLNADSFSMD 261

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P  V ++   D++QV  G  HS ALT +G ++ +GR  +G LG GR          P+ +
Sbjct: 262 P--VAVVGLSDVIQVIAGSEHSAALTENGEVYVWGRNQYGNLGNGRLSAANAIQSTPVKV 319


>gi|310795953|gb|EFQ31414.1| hypothetical protein GLRG_06558 [Glomerella graminicola M1.001]
          Length = 446

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 158/369 (42%), Gaps = 72/369 (19%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WGSGE+ +LG+G         V +A +P                          +  
Sbjct: 45  VAVWGSGENCELGLGPR-------VTEAPKP-------------------------RLAD 72

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           +  +     +VQ + GG HC A+   G+   WG N+ G  G    R  DT      D++ 
Sbjct: 73  RFLSADTVGVVQVSAGGMHCAALTRDGKVLTWGVNDDGALGRV--RLPDTPEEGAEDLLD 130

Query: 127 PQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG------------QPWPPGDI 167
           P    P  +       V QVAA  +    LT EG V+ WG               PP   
Sbjct: 131 PFESTPGQVPLDDDVEVVQVAATNSACFALTAEGTVYGWGSFAGGDGNFGFLHEKPPKTT 190

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR--SQPIP 225
           +Q+  PVR+ GLE V  +A GA H LAL  DG ++AWG+ E  +LG    + R     IP
Sbjct: 191 EQL--PVRIPGLENVMEMAGGANHILALTNDGNVFAWGSGEQNELGRRVLERRRFETLIP 248

Query: 226 VQ-GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND---KSSKMVPQKVN 281
            + GL       I AG +HS A+  DG+V+ +G    G+ G    +    ++ + P  V 
Sbjct: 249 QRVGLPKNKTAQIFAGSYHSFAIDVDGKVWAFGLNNFGQCGIPTREITGFTTIISPTIVK 308

Query: 282 LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKV---------TTGQP--M 330
            L+  +I  ++CG  HS+A T+ G +  +GR D G++               + G+P  +
Sbjct: 309 SLSDYEIRHIACGLHHSIACTKSGQVLVWGRCDDGQMSISLDAVAKEHIIFDSRGRPRVL 368

Query: 331 EVPINIPAP 339
            VP  +P P
Sbjct: 369 NVPTEVPIP 377



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 36/155 (23%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           ++ AWGSGE  +LG    E R +    + L P +V                         
Sbjct: 221 NVFAWGSGEQNELGRRVLERRRF----ETLIPQRV------------------------- 251

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIV 125
                L   K  Q   G +H  A+D  G+ +A+G N +GQCG           I+   IV
Sbjct: 252 ----GLPKNKTAQIFAGSYHSFAIDVDGKVWAFGLNNFGQCGIPTREITGFTTIISPTIV 307

Query: 126 IPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ 160
              +      +R +A G  HS+  T+ G V  WG+
Sbjct: 308 ---KSLSDYEIRHIACGLHHSIACTKSGQVLVWGR 339



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED---IVQVSCGGTHSVALTRDGHIF 308
           +V  WG GE+  LG G     +   P+  +     D   +VQVS GG H  ALTRDG + 
Sbjct: 44  DVAVWGSGENCELGLGPRVTEAPK-PRLADRFLSADTVGVVQVSAGGMHCAALTRDGKVL 102

Query: 309 SFGRGDHGRLGYGR 322
           ++G  D G LG  R
Sbjct: 103 TWGVNDDGALGRVR 116


>gi|357126800|ref|XP_003565075.1| PREDICTED: uncharacterized protein LOC100834588 [Brachypodium
           distachyon]
          Length = 1092

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 130/283 (45%), Gaps = 43/283 (15%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  +       +   + GG H   V  QG  Y+WG    G+ G            +  D
Sbjct: 303 VPKPLEFAVRLDVQNISCGGKHAALVSKQGEIYSWGEESGGRLGHG----------VDCD 352

Query: 124 IVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIK--------QIS-- 171
           +  P+       + +  VA G  H+  +T  G ++TWG     G  K         IS  
Sbjct: 353 VAHPKLIDALTHMNIELVACGEYHTCAVTLSGDLYTWGD----GTFKFGLLGHGNDISHW 408

Query: 172 VPVRVQG-LE--QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           VP ++ G LE   V  I+ G FH + +   G L+ +G+  +G LG GD +  S P  V+ 
Sbjct: 409 VPKKLHGPLEGIHVSSISCGPFHTVIVTSAGQLFTFGDGSFGVLGHGDRESLSVPKEVES 468

Query: 229 LSGLTLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           L GL  V  A G WH+ A+ +             G+++ WG G+ GRLG GD  K S++V
Sbjct: 469 LKGLRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGD--KESRLV 526

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319
           P  V  L   +  QV+CG   +VALT  GH+++ G   +G+LG
Sbjct: 527 PTCVAALVEPNFCQVACGHCLTVALTTSGHVYTMGSAVYGQLG 569



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 135/289 (46%), Gaps = 31/289 (10%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN--EYGQCGEEPERKDDTGRILRR 122
           P  ++AL++  I   A G +H  AV   G  Y WG    ++G  G      +D    + +
Sbjct: 356 PKLIDALTHMNIELVACGEYHTCAVTLSGDLYTWGDGTFKFGLLGH----GNDISHWVPK 411

Query: 123 DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG 178
            +  P      + V  ++ G  H+V++T  G ++T+G         GD + +SVP  V+ 
Sbjct: 412 KLHGPLE---GIHVSSISCGPFHTVIVTSAGQLFTFGDGSFGVLGHGDRESLSVPKEVES 468

Query: 179 LEQVKLI--AVGAFHNLALQE------------DGALWAWGNNEYGQLGTGDTQPRSQPI 224
           L+ ++ +  A G +H  A+ E             G ++ WG+ + G+LG GD + R  P 
Sbjct: 469 LKGLRTVRAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKESRLVPT 528

Query: 225 PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284
            V  L       +A G   + ALT  G VY  G   +G+LG   N ++  M+P +V    
Sbjct: 529 CVAALVEPNFCQVACGHCLTVALTTSGHVYTMGSAVYGQLG---NPQADGMLPARVEGKL 585

Query: 285 GEDIVQ-VSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
            ++ V+ +SCG  H   LT    ++++G+G +GRLG+G       P  V
Sbjct: 586 HKNFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGNTDDKNTPTLV 634



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 25/235 (10%)

Query: 121 RRDIVIPQ--RCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPV 174
           + D ++P+    A +L V+ ++ GG H+ +++++G +++WG+        G    ++ P 
Sbjct: 298 KMDCLVPKPLEFAVRLDVQNISCGGKHAALVSKQGEIYSWGEESGGRLGHGVDCDVAHPK 357

Query: 175 RVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNN--EYGQLGTGDTQPRSQPIPVQG-L 229
            +  L    ++L+A G +H  A+   G L+ WG+   ++G LG G+      P  + G L
Sbjct: 358 LIDALTHMNIELVACGEYHTCAVTLSGDLYTWGDGTFKFGLLGHGNDISHWVPKKLHGPL 417

Query: 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV 289
            G+ +  I+ G +H+  +T  G+++ +G G  G LG GD +  S  VP++V  L G   V
Sbjct: 418 EGIHVSSISCGPFHTVIVTSAGQLFTFGDGSFGVLGHGDRESLS--VPKEVESLKGLRTV 475

Query: 290 QVSCGGTHSVALTR------------DGHIFSFGRGDHGRLGYGRKVTTGQPMEV 332
           + +CG  H+ A+               G IF++G GD GRLG+G K +   P  V
Sbjct: 476 RAACGVWHTAAVVEVMAGNSSSSNCSSGKIFTWGDGDKGRLGHGDKESRLVPTCV 530



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 21/203 (10%)

Query: 168 KQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227
           K +   VR+     V+ I+ G  H   + + G +++WG    G+LG G     + P  + 
Sbjct: 305 KPLEFAVRLD----VQNISCGGKHAALVSKQGEIYSWGEESGGRLGHGVDCDVAHPKLID 360

Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG--EHGRLGFGDNDKSSKMVPQKVN-LLA 284
            L+ + +  +A G +H+ A+T  G++Y WG G  + G LG G++   S  VP+K++  L 
Sbjct: 361 ALTHMNIELVACGEYHTCAVTLSGDLYTWGDGTFKFGLLGHGND--ISHWVPKKLHGPLE 418

Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
           G  +  +SCG  H+V +T  G +F+FG G  G LG+G + +   P EV  ++   R    
Sbjct: 419 GIHVSSISCGPFHTVIVTSAGQLFTFGDGSFGVLGHGDRESLSVPKEVE-SLKGLRTV-- 475

Query: 345 GVDRRWIAKLVACGGRHTLAIVE 367
                      ACG  HT A+VE
Sbjct: 476 ---------RAACGVWHTAAVVE 489



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)

Query: 275 MVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPI 334
           +VP+ +      D+  +SCGG H+  +++ G I+S+G    GRLG+G       P  +  
Sbjct: 302 LVPKPLEFAVRLDVQNISCGGKHAALVSKQGEIYSWGEESGGRLGHGVDCDVAHPKLI-- 359

Query: 335 NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
                    D +    I +LVACG  HT A+ 
Sbjct: 360 ---------DALTHMNI-ELVACGEYHTCAVT 381



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 72/200 (36%), Gaps = 60/200 (30%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           I  WG G+ G+LG G+ E R                                     +P+
Sbjct: 505 IFTWGDGDKGRLGHGDKESRL------------------------------------VPT 528

Query: 67  QVNALSNTKIVQAAIGGWHCL--AVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
            V AL      Q A G  HCL  A+   G  Y  G   YGQ G             + D 
Sbjct: 529 CVAALVEPNFCQVACG--HCLTVALTTSGHVYTMGSAVYGQLGNP-----------QADG 575

Query: 125 VIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
           ++P R   KL    V +++ G  H  VLT    V+TWG+        G+    + P  V+
Sbjct: 576 MLPARVEGKLHKNFVEEISCGAYHVAVLTSRTEVYTWGKGANGRLGHGNTDDKNTPTLVE 635

Query: 178 GL--EQVKLIAVGAFHNLAL 195
            L  +QV+ +  G     A+
Sbjct: 636 ALKDKQVRNVVCGTNFTAAI 655



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S T +  WG G +G+LG GN +++    +V+AL+  +VR+VV G+  + AIC
Sbjct: 603 LTSRTEVYTWGKGANGRLGHGNTDDKNTPTLVEALKDKQVRNVVCGTNFTAAIC 656


>gi|403370898|gb|EJY85318.1| hypothetical protein OXYTRI_16821 [Oxytricha trifallax]
          Length = 821

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 174/384 (45%), Gaps = 66/384 (17%)

Query: 7   IIAWGSGEDGQLGIGNNEER------------EWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + +WGS ++ +LG    +              +   +VKALE  K+  +  G+ +S A  
Sbjct: 117 VFSWGSNQNAKLGHSYYKPSPNNVSSSSIQIVKQPTIVKALENQKIDGLSCGTSHSFAWS 176

Query: 55  DD------------GKTKTENI-----PSQVNALS-----NTKIVQAAIGGWHCLAV--- 89
           ++            G+   EN      P  +  L        K++Q + G  H LA+   
Sbjct: 177 NESGLVYGWGLGLNGRLGNENEGVVQEPQVLECLKIAMEIKMKVLQISCGENHTLALIQM 236

Query: 90  -------DDQGRAYAWGGNEYGQCGEEPERKDDTGRILR-RDIVIPQRCAPKLIVRQ--- 138
                    Q + + WG N+  Q G + +   +   +   R+I +P +  P         
Sbjct: 237 PPQNEGETSQNKLFVWGNNDKLQLGMDNQADGNNEDMQSAREISVPHQLDPDPFQHDTDN 296

Query: 139 ---------VAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVK 183
                    V A   +S  LT  G+V+TWG          DIK+   P  ++ L   QV 
Sbjct: 297 KNYSNQLIGVHASYYYSAALTSNGNVYTWGSGEFGRLGYMDIKKQPQPKVLKELTGFQVT 356

Query: 184 LIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
            I++G +H  A+ E G +++WG    GQLG G      Q  PV  L  + ++DI+ G  H
Sbjct: 357 RISLGYYHGAAITEQGQVFSWGRGINGQLGHGSVLNEDQVRPVSALQNIHIIDISCGESH 416

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           + ALT+ GEVY WG G+ G+LG GD  + S  +P KV  L  ++I Q+S G  HS ALT 
Sbjct: 417 TLALTNKGEVYSWGGGQLGQLGHGDFLRQS--LPIKVANLE-DNIAQISAGKRHSSALTD 473

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTG 327
           DG +F++G  ++G+LG    VT G
Sbjct: 474 DGKLFTWGSNEYGQLGRQANVTVG 497



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 150/357 (42%), Gaps = 75/357 (21%)

Query: 65  PSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           P +V AL    I Q   G     C+    +   ++WG N+  + G    +          
Sbjct: 85  PERVLALEKYNINQVICGSDQTFCITKSPENHVFSWGSNQNAKLGHSYYKPSPNNVSSSS 144

Query: 123 DIVIPQRCAPKLIVRQ----VAAGGTHSVVLTRE-GHVWTWG---------------QPW 162
             ++ Q    K +  Q    ++ G +HS   + E G V+ WG               Q  
Sbjct: 145 IQIVKQPTIVKALENQKIDGLSCGTSHSFAWSNESGLVYGWGLGLNGRLGNENEGVVQEP 204

Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL-----QEDG-----ALWAWGNNEYGQL 212
              +  +I++ ++++ L+    I+ G  H LAL     Q +G      L+ WGNN+  QL
Sbjct: 205 QVLECLKIAMEIKMKVLQ----ISCGENHTLALIQMPPQNEGETSQNKLFVWGNNDKLQL 260

Query: 213 GTG--------DTQPRSQ--------PIPVQGLS-----GLTLVDIAAGGWHSTALTDDG 251
           G          D Q   +        P P Q  +        L+ + A  ++S ALT +G
Sbjct: 261 GMDNQADGNNEDMQSAREISVPHQLDPDPFQHDTDNKNYSNQLIGVHASYYYSAALTSNG 320

Query: 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311
            VY WG GE GRLG+ D  K  +  P+ +  L G  + ++S G  H  A+T  G +FS+G
Sbjct: 321 NVYTWGSGEFGRLGYMDIKKQPQ--PKVLKELTGFQVTRISLGYYHGAAITEQGQVFSWG 378

Query: 312 RGDHGRLGYGRKVTTGQ--PMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           RG +G+LG+G  +   Q  P+    NI         +D       ++CG  HTLA+ 
Sbjct: 379 RGINGQLGHGSVLNEDQVRPVSALQNIHI-------ID-------ISCGESHTLALT 421



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 50/254 (19%)

Query: 2   ASTTSIIAWGSGEDGQLGI-----GNNEEREW---VCVVKALEP-------------YKV 40
            S   +  WG+ +  QLG+     GNNE+ +    + V   L+P              ++
Sbjct: 244 TSQNKLFVWGNNDKLQLGMDNQADGNNEDMQSAREISVPHQLDPDPFQHDTDNKNYSNQL 303

Query: 41  RSVVAGSRNSLAICDDGKT----------------KTENIPSQVNALSNTKIVQAAIGGW 84
             V A    S A+  +G                  K +  P  +  L+  ++ + ++G +
Sbjct: 304 IGVHASYYYSAALTSNGNVYTWGSGEFGRLGYMDIKKQPQPKVLKELTGFQVTRISLGYY 363

Query: 85  HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
           H  A+ +QG+ ++WG    GQ G         G +L  D V P      + +  ++ G +
Sbjct: 364 HGAAITEQGQVFSWGRGINGQLGH--------GSVLNEDQVRPVSALQNIHIIDISCGES 415

Query: 145 HSVVLTREGHVWTW----GQPWPPGDIKQISVPVRVQGLE-QVKLIAVGAFHNLALQEDG 199
           H++ LT +G V++W          GD  + S+P++V  LE  +  I+ G  H+ AL +DG
Sbjct: 416 HTLALTNKGEVYSWGGGQLGQLGHGDFLRQSLPIKVANLEDNIAQISAGKRHSSALTDDG 475

Query: 200 ALWAWGNNEYGQLG 213
            L+ WG+NEYGQLG
Sbjct: 476 KLFTWGSNEYGQLG 489



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 29/177 (16%)

Query: 213 GTGDTQPRSQ---------PIPVQGLSGLTLVDIAAGGWHSTALTDDGE--VYGWGRGEH 261
           G   +Q R+Q         P  V  L    +  +  G   +  +T   E  V+ WG  ++
Sbjct: 66  GNNSSQQRNQQRGMIRDPRPERVLALEKYNINQVICGSDQTFCITKSPENHVFSWGSNQN 125

Query: 262 GRLGFGDNDKSSKMV----------PQKVNLLAGEDIVQVSCGGTHSVALTRD-GHIFSF 310
            +LG      S   V          P  V  L  + I  +SCG +HS A + + G ++ +
Sbjct: 126 AKLGHSYYKPSPNNVSSSSIQIVKQPTIVKALENQKIDGLSCGTSHSFAWSNESGLVYGW 185

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G G +GRLG   +    +P  +     A       ++ +     ++CG  HTLA+++
Sbjct: 186 GLGLNGRLGNENEGVVQEPQVLECLKIA-------MEIKMKVLQISCGENHTLALIQ 235


>gi|383319186|ref|YP_005380027.1| chromosome condensation regulator RCC1 [Methanocella conradii
           HZ254]
 gi|379320556|gb|AFC99508.1| regulator of chromosome condensation RCC1 [Methanocella conradii
           HZ254]
          Length = 439

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 33/276 (11%)

Query: 72  SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA 131
           S+ K V  A+G +H LA+ D G  +   GNEY         +    +I   D+V      
Sbjct: 28  SSQKFVAVAVGHFHTLALADDGTIWK-SGNEYTPGSGPYADEFSYVQIPISDVV------ 80

Query: 132 PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLEQVKLIAV 187
                  +AAGG HS+ L ++G VW WG         G  +    PV+VQGL+ V +I+ 
Sbjct: 81  ------AIAAGGFHSLALKKDGTVWAWGVNNFGQLGDGTTENRYTPVQVQGLDNVVMISA 134

Query: 188 GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL 247
           G FH+LAL++DG +WAWG N   +LG G T+ R  P+ V+GLSG+  +          A+
Sbjct: 135 GDFHSLALKKDGTVWAWGLNREYELGDGTTENRYTPVQVEGLSGVRQI-----MGPCFAI 189

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
            +DG V  W RG+      G N      VP   N+ A    + +  G TH++ +  DG +
Sbjct: 190 KEDGTV--WARGK----AMGTNGTVPYQVPGLRNVKA----IDMDYGYTHALFIKEDGTV 239

Query: 308 FSFGRGDHGRLGYGRKVTTGQPME-VPINIPAPRNA 342
           +++G   +G+LG G  +    P + VP+ +   ++A
Sbjct: 240 WAWGLNTNGQLGDGSLLDRSDPYKTVPVQVKNLKDA 275



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 147/337 (43%), Gaps = 80/337 (23%)

Query: 39  KVRSVVAGSRNSLAICDDG---KTKTENIPSQ---VNALSNTKI-----VQAAIGGWHCL 87
           K  +V  G  ++LA+ DDG   K+  E  P      +  S  +I     V  A GG+H L
Sbjct: 31  KFVAVAVGHFHTLALADDGTIWKSGNEYTPGSGPYADEFSYVQIPISDVVAIAAGGFHSL 90

Query: 88  AVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHS 146
           A+   G  +AWG N +GQ G+   E +    ++   D V+            ++AG  HS
Sbjct: 91  ALKKDGTVWAWGVNNFGQLGDGTTENRYTPVQVQGLDNVV-----------MISAGDFHS 139

Query: 147 VVLTREGHVWTWG--QPWPPGD-----------------IKQI----------------- 170
           + L ++G VW WG  + +  GD                 ++QI                 
Sbjct: 140 LALKKDGTVWAWGLNREYELGDGTTENRYTPVQVEGLSGVRQIMGPCFAIKEDGTVWARG 199

Query: 171 -------SVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
                  +VP +V GL  VK I +  G  H L ++EDG +WAWG N  GQLG G    RS
Sbjct: 200 KAMGTNGTVPYQVPGLRNVKAIDMDYGYTHALFIKEDGTVWAWGLNTNGQLGDGSLLDRS 259

Query: 222 QP---IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR---GEHGRLGFGDNDKSSKM 275
            P   +PVQ  +      ++AG   S AL DDG V+ WG    G+HG    GD   + KM
Sbjct: 260 DPYKTVPVQVKNLKDAKAVSAGIMTSMALKDDGTVWVWGLNGGGQHGVGMVGDIVATPKM 319

Query: 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           V      L+G  +V +S    HS  L  DG ++  G 
Sbjct: 320 VQG----LSG--VVAISSKLVHSAFLKEDGSVWVCGE 350



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 123/283 (43%), Gaps = 53/283 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI------------ 53
           ++ AWG    GQLG G  E R     V+ L+   V  + AG  +SLA+            
Sbjct: 97  TVWAWGVNNFGQLGDGTTENRYTPVQVQGLD--NVVMISAGDFHSLALKKDGTVWAWGLN 154

Query: 54  ----CDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                 DG T+    P QV  LS  + +        C A+ + G  +A  G   G  G  
Sbjct: 155 REYELGDGTTENRYTPVQVEGLSGVRQIMGP-----CFAIKEDGTVWA-RGKAMGTNGTV 208

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPWPPGDI 167
           P +             +P     K I   +  G TH++ +  +G VW WG       GD 
Sbjct: 209 PYQ-------------VPGLRNVKAI--DMDYGYTHALFIKEDGTVWAWGLNTNGQLGDG 253

Query: 168 KQI-------SVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QP 219
             +       +VPV+V+ L+  K ++ G   ++AL++DG +W WG N  GQ G G     
Sbjct: 254 SLLDRSDPYKTVPVQVKNLKDAKAVSAGIMTSMALKDDGTVWVWGLNGGGQHGVGMVGDI 313

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHG 262
            + P  VQGLSG  +V I++   HS  L +DG V  W  GE+G
Sbjct: 314 VATPKMVQGLSG--VVAISSKLVHSAFLKEDGSV--WVCGENG 352


>gi|297812127|ref|XP_002873947.1| hypothetical protein ARALYDRAFT_488831 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319784|gb|EFH50206.1| hypothetical protein ARALYDRAFT_488831 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1100

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 150/335 (44%), Gaps = 67/335 (20%)

Query: 70  ALSNTKIVQA---AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           AL +T ++     A GG H + V  QG +++WG    G+ G                 V 
Sbjct: 300 ALESTIVLDVQYIACGGQHAVLVTKQGESFSWGEESEGRLGHG---------------VD 344

Query: 127 PQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQIS-- 171
                PKLI       +  VA G  HS  +T  G ++TWG+    GD        ++S  
Sbjct: 345 SNVQHPKLIDALSTTNIELVACGEYHSCAVTLSGDLYTWGK----GDFGILGHGNEVSHW 400

Query: 172 VPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228
           VP RV  L +   V  IA G +H   +   G L+ +G+  +G LG GD +    P  V  
Sbjct: 401 VPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDS 460

Query: 229 LSGLTLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSSKMV 276
           L GL  V  A G WH+ A+ +             G+++ WG G+  RLG GD  K  K+V
Sbjct: 461 LKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGD--KEPKLV 518

Query: 277 PQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           P  V  L   +  QV+CG + +VALT  GH+++ G   +G+LG           +VP  +
Sbjct: 519 PTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLG-----NPHADGKVPTRV 573

Query: 337 PAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
                  +G   +   + +ACG  H +A++  +TE
Sbjct: 574 -------EGKLHKSFVEEIACGAYH-VAVLTSRTE 600



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 119/310 (38%), Gaps = 85/310 (27%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  ++ALS T I   A G +H  AV   G  Y WG  ++G  G   E             
Sbjct: 350 PKLIDALSTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSH---------- 399

Query: 125 VIPQRC---APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQ 177
            +P+R       + V  +A G  H+ V+T  G ++T+G         GD K + +P  V 
Sbjct: 400 WVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVD 459

Query: 178 GLEQVKLI--AVGAFHNLALQE------------DGALWAWGNNEYGQLGTGDTQPRSQP 223
            L+ ++ +  A G +H  A+ E             G L+ WG+ +  +LG GD +P+  P
Sbjct: 460 SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVP 519

Query: 224 IPVQGL-----------SGLTLV------------------------------------- 235
             V  L             LT+                                      
Sbjct: 520 TCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHADGKVPTRVEGKLHK 579

Query: 236 ----DIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
               +IA G +H   LT   EVY WG+G +GRLG GD D   +  P  V  L  + +  +
Sbjct: 580 SFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDAD--DRNSPTLVESLKDKQVKSI 637

Query: 292 SCGGTHSVAL 301
           +CG   + A+
Sbjct: 638 ACGSNFTAAV 647



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 77/222 (34%), Gaps = 60/222 (27%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG G+  +LG G+ E +                                     +P+
Sbjct: 497 LFTWGDGDKSRLGHGDKEPKL------------------------------------VPT 520

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V AL      Q A G    +A+   G  Y  G   YGQ G               D  +
Sbjct: 521 CVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNP-----------HADGKV 569

Query: 127 PQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           P R   KL    V ++A G  H  VLT    V+TWG+        GD    + P  V+ L
Sbjct: 570 PTRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESL 629

Query: 180 --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             +QVK IA G+    A+     L  W +     + +G  QP
Sbjct: 630 KDKQVKSIACGSNFTAAV----CLHKWASGMDQSMCSGCRQP 667



 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S T +  WG G +G+LG G+ ++R    +V++L+  +V+S+  GS  + A+C
Sbjct: 595 LTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAAVC 648


>gi|334187769|ref|NP_001190338.1| regulator of chromosome condensation-like protein with FYVE zinc
           finger domain [Arabidopsis thaliana]
 gi|332005321|gb|AED92704.1| regulator of chromosome condensation-like protein with FYVE zinc
           finger domain [Arabidopsis thaliana]
          Length = 1139

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 149/338 (44%), Gaps = 64/338 (18%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           +P  + +     +   A GG H + V  QG +++WG    G+ G   +            
Sbjct: 336 LPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQ-------- 387

Query: 124 IVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI------KQI 170
                   PKLI       +  VA G  HS  +T  G ++TWG+    GD        ++
Sbjct: 388 -------HPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGK----GDFGILGHGNEV 436

Query: 171 S--VPVRVQGLEQ---VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
           S  VP RV  L +   V  IA G +H   +   G L+ +G+  +G LG GD +    P  
Sbjct: 437 SHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPRE 496

Query: 226 VQGLSGLTLVDIAAGGWHSTALTD------------DGEVYGWGRGEHGRLGFGDNDKSS 273
           V  L GL  V  A G WH+ A+ +             G+++ WG G+  RLG GD  K  
Sbjct: 497 VDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGD--KEP 554

Query: 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVP 333
           K+VP  V  L   +  QV+CG + +VALT  GH+++ G   +G+LG           +VP
Sbjct: 555 KLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLG-----NPHADGKVP 609

Query: 334 INIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371
             +       DG   +   + +ACG  H +A++  +TE
Sbjct: 610 TRV-------DGKLHKSFVEEIACGAYH-VAVLTSRTE 639



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 120/310 (38%), Gaps = 85/310 (27%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P  ++AL+ T I   A G +H  AV   G  Y WG  ++G  G   E             
Sbjct: 389 PKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSH---------- 438

Query: 125 VIPQRC---APKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQ 177
            +P+R       + V  +A G  H+ V+T  G ++T+G         GD K + +P  V 
Sbjct: 439 WVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVD 498

Query: 178 GLEQVKLI--AVGAFHNLALQE------------DGALWAWGNNEYGQLGTGDTQPRSQP 223
            L+ ++ +  A G +H  A+ E             G L+ WG+ +  +LG GD +P+  P
Sbjct: 499 SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVP 558

Query: 224 I----------------------------------PVQGLSG--------LTLVD----- 236
                                              PV G  G         T VD     
Sbjct: 559 TCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPHADGKVPTRVDGKLHK 618

Query: 237 -----IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291
                IA G +H   LT   EVY WG+G +GRLG GD D  +   P  V  L  + +  +
Sbjct: 619 SFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNS--PTLVESLKDKQVKSI 676

Query: 292 SCGGTHSVAL 301
           +CG   + A+
Sbjct: 677 ACGSNFTAAV 686



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 77/222 (34%), Gaps = 60/222 (27%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPS 66
           +  WG G+  +LG G+ E +                                     +P+
Sbjct: 536 LFTWGDGDKSRLGHGDKEPKL------------------------------------VPT 559

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
            V AL      Q A G    +A+   G  Y  G   YGQ G               D  +
Sbjct: 560 CVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNP-----------HADGKV 608

Query: 127 PQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGL 179
           P R   KL    V ++A G  H  VLT    V+TWG+        GD    + P  V+ L
Sbjct: 609 PTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESL 668

Query: 180 --EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
             +QVK IA G+    A+     L  W +     + +G  QP
Sbjct: 669 KDKQVKSIACGSNFTAAV----CLHKWASGMDQSMCSGCRQP 706



 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S T +  WG G +G+LG G+ ++R    +V++L+  +V+S+  GS  + A+C
Sbjct: 634 LTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAAVC 687


>gi|291223965|ref|XP_002731978.1| PREDICTED: cytochrome P450, family 4, subfamily F, polypeptide
           2-like [Saccoglossus kowalevskii]
          Length = 1049

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 172/363 (47%), Gaps = 50/363 (13%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
           + +WG+   GQLG+G+ +++     +  +   K+  V  G  ++L + D G         
Sbjct: 27  MFSWGANSYGQLGLGHQDDKSKPEKILKIPDGKIVDVTGGGGHTLLLTDCGAIYSCGWNS 86

Query: 60  -------KTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPE 111
                   T+N+ S    + +   V     GW  CLA+ + G  YAWG N +GQ G  PE
Sbjct: 87  KGQLGLGHTDNL-SVFKRIDHLPPVIKVTCGWDFCLAITEVGDLYAWGCNVFGQLGI-PE 144

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG----------QP 161
              D+   +   I I  R      V  +AAG  HS+ +T +G +W+WG          Q 
Sbjct: 145 I--DSFTAIPTKIQIFSRN-----VTSIAAGLRHSLAVTNDGKLWSWGSARKGQLGNDQS 197

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT------- 214
                + Q  VP +V  LE +  ++ G++H+ AL   G ++ WG+N++ QL         
Sbjct: 198 KTGYQLLQ-RVPKQVHKLENISSVSSGSYHSTALTACGNMYLWGSNKHNQLTNSVQGVVQ 256

Query: 215 --GDTQPRSQPIP----VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG- 267
             G ++    P+P    ++   G  ++ + +G  H  A+T D  V+GWGR ++ +LG   
Sbjct: 257 SGGSSKEDILPVPTKLNLELFGGRQILAVHSGWTHILAITHDSNVFGWGRNDYSQLGISL 316

Query: 268 -DNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT 326
             N+ + K V +   L+  +DI Q++CG  H++AL+ D  + ++G  +HG  G G++   
Sbjct: 317 TGNNCAKKDVTKPKELVILKDIKQIACGSEHNLALSDDNKVLAWGWNEHGSCGNGKEENV 376

Query: 327 GQP 329
             P
Sbjct: 377 LTP 379



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 145/340 (42%), Gaps = 52/340 (15%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------ 59
           +I + G    GQLG+G+ +       +  L P  V  V  G    LAI + G        
Sbjct: 78  AIYSCGWNSKGQLGLGHTDNLSVFKRIDHLPP--VIKVTCGWDFCLAITEVGDLYAWGCN 135

Query: 60  -----------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                          IP+++   S   +   A G  H LAV + G+ ++WG    GQ G 
Sbjct: 136 VFGQLGIPEIDSFTAIPTKIQIFSRN-VTSIAAGLRHSLAVTNDGKLWSWGSARKGQLGN 194

Query: 109 EPERKDDTG-RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
           +  +   TG ++L+R   +P++      +  V++G  HS  LT  G+++ WG        
Sbjct: 195 DQSK---TGYQLLQR---VPKQVHKLENISSVSSGSYHSTALTACGNMYLWGSNKHNQLT 248

Query: 162 -------WPPGDIKQISVPV------RVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE 208
                     G  K+  +PV       + G  Q+  +  G  H LA+  D  ++ WG N+
Sbjct: 249 NSVQGVVQSGGSSKEDILPVPTKLNLELFGGRQILAVHSGWTHILAITHDSNVFGWGRND 308

Query: 209 YGQLG---TGDTQPRSQPIPVQGLSGLT-LVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264
           Y QLG   TG+   +      + L  L  +  IA G  H+ AL+DD +V  WG  EHG  
Sbjct: 309 YSQLGISLTGNNCAKKDVTKPKELVILKDIKQIACGSEHNLALSDDNKVLAWGWNEHGSC 368

Query: 265 GFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
           G G  +  + + PQ ++ LA E I  +    TH   L +D
Sbjct: 369 GNGKEE--NVLTPQVIDDLAKEKIRLIDKFTTHRYYLRKD 406


>gi|157821577|ref|NP_001101850.1| RCC1 and BTB domain-containing protein 1 [Rattus norvegicus]
 gi|149064107|gb|EDM14377.1| regulator of chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1 [Rattus norvegicus]
          Length = 531

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 22/230 (9%)

Query: 143 GTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQG---LEQVKLIAVGAFHNLAL 195
           G H ++ T +G V+ WG         G   Q   P++V     ++QV  +A G+ H++AL
Sbjct: 84  GPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLVKQVVEVACGSHHSMAL 143

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGGWHSTALTDDGEVY 254
             DG L+AWG N  GQ+G+G T  +  P  V   L    +V+IA G   S A+ D GEVY
Sbjct: 144 AADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKKVVNIACGQTSSMAVLDSGEVY 203

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
           GWG   +G+LG G+N   +++ P +V  L G  + Q+ CG  H++ALT +G ++++G   
Sbjct: 204 GWGYNGNGQLGLGNN--GNQLTPVRVAALHGVCVNQIVCGYAHTLALTDEGLLYAWGANT 261

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P ++             V++  + ++ AC   HT A
Sbjct: 262 YGQLGTGSKNNLLSPTQIM------------VEKERVIEIAACHSTHTSA 299



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 132/269 (49%), Gaps = 26/269 (9%)

Query: 57  GKTKTENIPSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115
           G  ++  +P ++ AL   +I   + G G H L   + G  YAWG N Y Q G     +  
Sbjct: 57  GDNQSTLVPKKLEALCGKRIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQG- 115

Query: 116 TGRILRRDIVIPQRCAPKLIVRQV---AAGGTHSVVLTREGHVWTWGQ----PWPPGDIK 168
                    + P +    L+V+QV   A G  HS+ L  +G ++ WG         G   
Sbjct: 116 ---------IAPIQVCTNLLVKQVVEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA 166

Query: 169 QISVPVRVQGL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225
               P +V      ++V  IA G   ++A+ + G ++ WG N  GQLG G+   +  P+ 
Sbjct: 167 NQPTPRKVTNCLHTKKVVNIACGQTSSMAVLDSGEVYGWGYNGNGQLGLGNNGNQLTPVR 226

Query: 226 VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG 285
           V  L G+ +  I  G  H+ ALTD+G +Y WG   +G+LG G   K++ + P ++ ++  
Sbjct: 227 VAALHGVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTG--SKNNLLSPTQI-MVEK 283

Query: 286 EDIVQV-SCGGTH-SVALTRDGHIFSFGR 312
           E ++++ +C  TH S A T+ GH++ +G+
Sbjct: 284 ERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P     + +  +  + A   + + +   ++ +G N    LGTGD Q   
Sbjct: 7   WP---IFTLLSPQETGSIRKACVFGISASEAIYVTDSDEVFVFGLNYSNCLGTGDNQSTL 63

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            P  ++ L G  +  ++ G G H    T+DG VY WG   + +LG G  ++    +    
Sbjct: 64  VPKKLEALCGKRIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPIQVCT 123

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           NLL  + +V+V+CG  HS+AL  DG +F++G  + G++G G             N P PR
Sbjct: 124 NLLV-KQVVEVACGSHHSMALAADGELFAWGYNNCGQVGSGSTA----------NQPTPR 172

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
              + +  + +   +ACG   ++A+++
Sbjct: 173 KVTNCLHTKKVVN-IACGQTSSMAVLD 198



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 30/180 (16%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREW-VCVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           +A+   + AWG    GQ+G G+   +     V   L   KV ++  G  +S+A+ D G+ 
Sbjct: 143 LAADGELFAWGYNNCGQVGSGSTANQPTPRKVTNCLHTKKVVNIACGQTSSMAVLDSGEV 202

Query: 60  K----------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL    + Q   G  H LA+ D+G  YAWG N Y
Sbjct: 203 YGWGYNGNGQLGLGNNGNQLTPVRVAALHGVCVNQIVCGYAHTLALTDEGLLYAWGANTY 262

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG   + +++ P +     + ++   A   TH S   T+ GHV+ WGQ
Sbjct: 263 GQLG--------TGS--KNNLLSPTQIMVEKERVIEIAACHSTHTSAAKTQGGHVYMWGQ 312


>gi|171847108|gb|AAI62028.1| Rpgr protein [Rattus norvegicus]
          Length = 677

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 144/308 (46%), Gaps = 28/308 (9%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ + AL   K+  AA G  H L   D G  YA GGN  GQ G       DT   +    
Sbjct: 116 PTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQI---- 171

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDI-----KQISVPVRVQGL 179
                  P  I++Q++AG   S  LT +G ++ WG     G I       + +P  V   
Sbjct: 172 ---GFFTPSDIIKQLSAGANTSAALTEDGKLFMWGD-NSEGQIGLKNKSNVCIPHEVTVG 227

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDI 237
           + +  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q + G+   ++ +
Sbjct: 228 KPISWISCGYYHSAFVTTDGELYTFGEPENGKLGLPNQLLINHRSP-QRVLGIPDKVIQV 286

Query: 238 AAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297
           A GG H+  LT+   VY +G G+ G+LG G     +   P+ ++ +  + I  +SCG  H
Sbjct: 287 ACGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETSE-PKIIDRIKDQKISHISCGENH 344

Query: 298 SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVAC 357
           +  +T  G +++FG G HG+LG G +  T Q          P    + +  ++  +L+AC
Sbjct: 345 TALMTDIGLMYTFGDGRHGKLGLGMENFTNQFF--------PTLCSNFL--KFTVQLIAC 394

Query: 358 GGRHTLAI 365
           GG H L  
Sbjct: 395 GGCHMLVF 402



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 30/240 (12%)

Query: 139 VAAGGTHSVVLTREGHVW-----TWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFH 191
           ++ G  H+ ++T    ++      WGQ    G    IS P  ++ L  E+VKL A G  H
Sbjct: 78  LSCGDEHTAIVTGNNKLYMFGSNNWGQ-LGLGSKSAISKPTCIKALKPEKVKLAACGRNH 136

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI----AAGGWHSTAL 247
            L   + G ++A G N  GQLG GDT  R        +   T  DI    +AG   S AL
Sbjct: 137 TLVSTDTGGVYAAGGNNEGQLGLGDTDDRDT---FHQIGFFTPSDIIKQLSAGANTSAAL 193

Query: 248 TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHI 307
           T+DG+++ WG    G++G    +KS+  +P +V +  G+ I  +SCG  HS  +T DG +
Sbjct: 194 TEDGKLFMWGDNSEGQIGL--KNKSNVCIPHEVTV--GKPISWISCGYYHSAFVTTDGEL 249

Query: 308 FSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           ++FG  ++G+LG         P ++ IN  +P+    G+  + I   VACGG HT+ + E
Sbjct: 250 YTFGEPENGKLGL--------PNQLLINHRSPQRVL-GIPDKVIQ--VACGGGHTVVLTE 298



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 36/320 (11%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           +  +GS   GQLG+G+         +KAL+P KV+    G  ++L   D G         
Sbjct: 94  LYMFGSNNWGQLGLGSKSAISKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNN 153

Query: 58  -------KTKTENIPSQVNALSNTKIV-QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T   +   Q+   + + I+ Q + G     A+ + G+ + WG N  GQ G +
Sbjct: 154 EGQLGLGDTDDRDTFHQIGFFTPSDIIKQLSAGANTSAALTEDGKLFMWGDNSEGQIGLK 213

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP 163
                      + ++ IP        +  ++ G  HS  +T +G ++T+G+P       P
Sbjct: 214 N----------KSNVCIPHEVTVGKPISWISCGYYHSAFVTTDGELYTFGEPENGKLGLP 263

Query: 164 PGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-PRS 221
              +     P RV G+ ++V  +A G  H + L E   ++A+G  ++GQLG G      S
Sbjct: 264 NQLLINHRSPQRVLGIPDKVIQVACGGGHTVVLTEK-VVYAFGLGQFGQLGLGTFLFETS 322

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281
           +P  +  +    +  I+ G  H+  +TD G +Y +G G HG+LG G  + +++  P   +
Sbjct: 323 EPKIIDRIKDQKISHISCGENHTALMTDIGLMYTFGDGRHGKLGLGMENFTNQFFPTLCS 382

Query: 282 LLAGEDIVQVSCGGTHSVAL 301
                 +  ++CGG H +  
Sbjct: 383 NFLKFTVQLIACGGCHMLVF 402


>gi|408500677|ref|YP_006864596.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
 gi|408465501|gb|AFU71030.1| RCC1 domain-containing protein [Bifidobacterium asteroides PRL2011]
          Length = 1082

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 160/393 (40%), Gaps = 72/393 (18%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVK----ALEPYKVRSVVAGSRNSLAICDDGKTKT--- 61
           AWG    GQLG G   ++     VK        +    V AG R+SLA+  DG       
Sbjct: 588 AWGDNRSGQLGNGMTTQQNTPVQVKKPAGVSADFTYVQVSAGYRHSLALGSDGYVYAWGD 647

Query: 62  --------------ENIPSQV-------NALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG 100
                           +P +V       N  +  K +Q   GG H LA+D +G  +AWG 
Sbjct: 648 NTYAQLGNNTSGGYSTVPVRVCDPSTHSNVNTGLKAIQVDAGGEHSLAIDKEGNVWAWGR 707

Query: 101 NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-- 158
           N  GQ G        +  +   D   P   +  L+  +VA GG HS+ + R+G  W W  
Sbjct: 708 NRNGQLGNGTSSSYSSAPVRVCDPEHPTDASKGLVALKVAGGGAHSLAIDRDGDTWAWGF 767

Query: 159 ------GQPWPPGDIKQISVPVRV----------QGLEQVKLIAVGAFHNLALQEDGALW 202
                 G     G      VPVRV          + L+ V+ I+ G  H++A+   G  W
Sbjct: 768 NSYGQLGNNVTSGFDGANPVPVRVRDPNNPDDTSKNLKSVQ-ISAGFEHSIAIDAQGNTW 826

Query: 203 AWGNNEYGQLGTGDT-----------QPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251
           +WG N +G+LG   T            P +  IP +         ++AG   S A+  +G
Sbjct: 827 SWGWNYWGELGQNTTNEDILSPARVYNPDNPSIPFKA------SQVSAGYDTSLAVDING 880

Query: 252 EVYGWGRGEHGRLGFGDNDKSS-KMVPQKV-------NLLAGEDIVQVSCGGTHSVALTR 303
             + WGR  +G+LG+ + D S     P KV       N     D   VS G  HS+A+ +
Sbjct: 881 IAWSWGRNTYGQLGYTNYDDSRGHNQPAKVRNPASPNNTDLSLDSTLVSAGNWHSLAIGK 940

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           DG+ + +G   +G+LG         PM V  N+
Sbjct: 941 DGYTYGWGYNKYGQLGNNSNKNAYVPMLVEFNL 973



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 153/338 (45%), Gaps = 59/338 (17%)

Query: 67  QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVI 126
           + N +SN+ I    +     LAV   G AYAWG N  GQ G     + +T   +++    
Sbjct: 559 KFNQISNS-IGSVVMQNSVSLAVGSDGNAYAWGDNRSGQLGNGMTTQQNTPVQVKK---- 613

Query: 127 PQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQI---------SVPVRV- 176
           P   +      QV+AG  HS+ L  +G+V+ WG         Q+         +VPVRV 
Sbjct: 614 PAGVSADFTYVQVSAGYRHSLALGSDGYVYAWGD----NTYAQLGNNTSGGYSTVPVRVC 669

Query: 177 ---------QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ-PI-- 224
                     GL+ +++ A G  H+LA+ ++G +WAWG N  GQLG G +   S  P+  
Sbjct: 670 DPSTHSNVNTGLKAIQVDA-GGEHSLAIDKEGNVWAWGRNRNGQLGNGTSSSYSSAPVRV 728

Query: 225 -----PVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM---- 275
                P     GL  + +A GG HS A+  DG+ + WG   +G+LG   N+ +S      
Sbjct: 729 CDPEHPTDASKGLVALKVAGGGAHSLAIDRDGDTWAWGFNSYGQLG---NNVTSGFDGAN 785

Query: 276 -VPQKVNLLAGED-------IVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTG 327
            VP +V      D        VQ+S G  HS+A+   G+ +S+G    G LG   + TT 
Sbjct: 786 PVPVRVRDPNNPDDTSKNLKSVQISAGFEHSIAIDAQGNTWSWGWNYWGELG---QNTTN 842

Query: 328 QPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAI 365
           + +  P  +  P    D     + A  V+ G   +LA+
Sbjct: 843 EDILSPARVYNP----DNPSIPFKASQVSAGYDTSLAV 876


>gi|118084855|ref|XP_417055.2| PREDICTED: RCC1 and BTB domain-containing protein 2 [Gallus gallus]
          Length = 566

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 158/350 (45%), Gaps = 55/350 (15%)

Query: 36  EPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAI----GGWHCLAVDD 91
           EP   R + A   ++L + D GK    ++ SQ       K+++ A      G   L V +
Sbjct: 24  EPPPSRVLEATLLSALKMLDVGKWPIFSLCSQ----EELKLIRQACVFGSAGNEVLYVTE 79

Query: 92  QGRAYAWGGNEYGQCGE-------EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT 144
               +  G N  G  G        EP+R D               C  K+      +G  
Sbjct: 80  NDEVFVLGMNCSGCLGTGDIQSTIEPKRLDSL-------------CGKKIACLSYGSG-P 125

Query: 145 HSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQ-GLEQVKLI--AVGAFHNLALQE 197
           H V+ T EG V+TWG         G      VP +V   L   K+I  A G+ H++ L  
Sbjct: 126 HVVLATEEGEVYTWGHNAYSQLGNGTTNHGLVPCQVSTNLVNKKVIEVACGSHHSMVLTS 185

Query: 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL---TLVDIAAGGWHSTALTDDGEVY 254
           DG ++ WG N  GQ+G+G T   +QPIP +  S L    +V+IA G   S A+ ++GEVY
Sbjct: 186 DGEVYTWGYNNSGQVGSGSTA--NQPIPRRVTSCLQNKVVVNIACGQMCSMAVVENGEVY 243

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            WG   +G+LG G +   ++  P ++  L G  + +V+CG  H++ LT +G I+++G   
Sbjct: 244 VWGYNGNGQLGLGSS--GNQPTPCRIAALQGIRVQRVACGCAHTLVLTDEGQIYAWGANS 301

Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
           +G+LG G K     P  V             VD+  + ++ AC   HT A
Sbjct: 302 YGQLGTGNKSNQSYPTTVT------------VDKDRVVEIAACHSAHTSA 339



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 127/260 (48%), Gaps = 24/260 (9%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P ++++L   KI   + G G H +   ++G  Y WG N Y Q G                
Sbjct: 105 PKRLDSLCGKKIACLSYGSGPHVVLATEEGEVYTWGHNAYSQLGNGTTNHG--------- 155

Query: 124 IVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRV 176
            ++P + +  L+   V +VA G  HS+VLT +G V+TWG         G      +P RV
Sbjct: 156 -LVPCQVSTNLVNKKVIEVACGSHHSMVLTSDGEVYTWGYNNSGQVGSGSTANQPIPRRV 214

Query: 177 QGLEQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
               Q K+   IA G   ++A+ E+G ++ WG N  GQLG G +  +  P  +  L G+ 
Sbjct: 215 TSCLQNKVVVNIACGQMCSMAVVENGEVYVWGYNGNGQLGLGSSGNQPTPCRIAALQGIR 274

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +  +A G  H+  LTD+G++Y WG   +G+LG G  +KS++  P  V +     +   +C
Sbjct: 275 VQRVACGCAHTLVLTDEGQIYAWGANSYGQLGTG--NKSNQSYPTTVTVDKDRVVEIAAC 332

Query: 294 GGTH-SVALTRDGHIFSFGR 312
              H S A T+ G ++ +G+
Sbjct: 333 HSAHTSAAKTQSGQVYMWGQ 352



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 26/178 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWV-CVVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           + S   +  WG    GQ+G G+   +     V   L+   V ++  G   S+A+ ++G+ 
Sbjct: 183 LTSDGEVYTWGYNNSGQVGSGSTANQPIPRRVTSCLQNKVVVNIACGQMCSMAVVENGEV 242

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P ++ AL   ++ + A G  H L + D+G+ YAWG N Y
Sbjct: 243 YVWGYNGNGQLGLGSSGNQPTPCRIAALQGIRVQRVACGCAHTLVLTDEGQIYAWGANSY 302

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G   +        +  D           +V   A    H S   T+ G V+ WGQ
Sbjct: 303 GQLGTGNKSNQSYPTTVTVD--------KDRVVEIAACHSAHTSAAKTQSGQVYMWGQ 352


>gi|23503098|sp|Q92834.2|RPGR_HUMAN RecName: Full=X-linked retinitis pigmentosa GTPase regulator;
           Flags: Precursor
 gi|119579846|gb|EAW59442.1| retinitis pigmentosa GTPase regulator, isoform CRA_b [Homo sapiens]
          Length = 1020

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 26/307 (8%)

Query: 65  PSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDI 124
           P+ V AL   K+  AA G  H L   + G  YA GGN  GQ G     + +T  ++    
Sbjct: 78  PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVI---- 133

Query: 125 VIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGLE 180
                   +  ++Q++AG   S  LT +G ++ WG          ++  + VP +V   +
Sbjct: 134 ---SFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNVCVPQQVTIGK 190

Query: 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL--TLVDIA 238
            V  I+ G +H+  +  DG L+ +G  E G+LG  +    +   P Q +S +   ++ +A
Sbjct: 191 PVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTP-QLVSEIPEKVIQVA 249

Query: 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GG H+  LT++  VY +G G+ G+LG G     +   P+ +  +  + I  +SCG  H+
Sbjct: 250 CGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSE-PKVIENIRDQTISYISCGENHT 307

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACG 358
             +T  G +++FG G HG+LG G        +E   N   P    + +  R+I KLVACG
Sbjct: 308 ALITDIGLMYTFGDGRHGKLGLG--------LENFTNHFIPTLCSNFL--RFIVKLVACG 357

Query: 359 GRHTLAI 365
           G H +  
Sbjct: 358 GCHMVVF 364



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 38/327 (11%)

Query: 52  AICDDGKTK-TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
           A+   GK+K  EN P +     N   V  + G  H   V    + Y +G N +GQ G   
Sbjct: 13  AVFTFGKSKFAENNPGKF-WFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLG--- 68

Query: 111 ERKDDTGRILRRDIVIPQRCAPKL---IVRQVAAGGTHSVVLTREGHVWTWG----QPWP 163
                   +  +  +    C   L    V+  A G  H++V T  G+V+  G        
Sbjct: 69  --------LGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLG 120

Query: 164 PGDIKQ---ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            GD ++     V        ++K ++ G+  + AL EDG L+ WG+N  GQ+G  +    
Sbjct: 121 LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVS-- 178

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +  +P Q   G  +  I+ G +HS  +T DGE+Y +G  E+G+LG  +    +   PQ V
Sbjct: 179 NVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLGLPNQLLGNHRTPQLV 238

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
           + +  E ++QV+CGG H+V LT +  +++FG G  G+LG G  +      +V  NI    
Sbjct: 239 SEIP-EKVIQVACGGEHTVVLTENA-VYTFGLGQFGQLGLGTFLFETSEPKVIENI---- 292

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
                  R      ++CG  HT  I +
Sbjct: 293 -------RDQTISYISCGENHTALITD 312



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-------- 58
           +  +GS   GQLG+G+         VKAL+P KV+    G  ++L   + G         
Sbjct: 56  LYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 59  --------TKTENIPSQVNAL-SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                   T+  N    ++   S  KI Q + G     A+ + GR + WG N  GQ G  
Sbjct: 116 EGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIG-- 173

Query: 110 PERKDDTGRILRR--DIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------ 161
                     L+   ++ +PQ+      V  ++ G  HS  +T +G ++ +G+P      
Sbjct: 174 ----------LKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFGEPENGKLG 223

Query: 162 WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-P 219
            P   +     P  V  + E+V  +A G  H + L E+ A++ +G  ++GQLG G     
Sbjct: 224 LPNQLLGNHRTPQLVSEIPEKVIQVACGGEHTVVLTEN-AVYTFGLGQFGQLGLGTFLFE 282

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
            S+P  ++ +   T+  I+ G  H+  +TD G +Y +G G HG+LG G  + ++  +P  
Sbjct: 283 TSEPKVIENIRDQTISYISCGENHTALITDIGLMYTFGDGRHGKLGLGLENFTNHFIPTL 342

Query: 280 VNLLAGEDIVQVSCGGTHSVAL 301
            +      +  V+CGG H V  
Sbjct: 343 CSNFLRFIVKLVACGGCHMVVF 364



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
           + + GA++ +G +++ +   G    ++  +PV          ++ G  HS  +T + ++Y
Sbjct: 8   MPDSGAVFTFGKSKFAENNPGKFWFKND-VPVH---------LSCGDEHSAVVTGNNKLY 57

Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
            +G    G+LG G     SK  P  V  L  E +   +CG  H++  T  G++++ G  +
Sbjct: 58  MFGSNNWGQLGLGSKSAISK--PTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNN 115

Query: 315 HGRLGYG 321
            G+LG G
Sbjct: 116 EGQLGLG 122


>gi|260796835|ref|XP_002593410.1| hypothetical protein BRAFLDRAFT_119547 [Branchiostoma floridae]
 gi|229278634|gb|EEN49421.1| hypothetical protein BRAFLDRAFT_119547 [Branchiostoma floridae]
          Length = 538

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 133/282 (47%), Gaps = 38/282 (13%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +++ L   KIV    G G H L   D G  Y+WG N Y Q G     +          
Sbjct: 72  PRKIDILCKKKIVDIGYGSGPHVLVCTDNGDLYSWGHNGYSQLGNGSTNQG--------- 122

Query: 124 IVIPQRCAPKLI---VRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRV 176
            + PQ     LI   V +VA G  HS+ LT EG V+ WG         G     + P +V
Sbjct: 123 -LSPQLITTNLIGRKVVKVACGSHHSLALTLEGEVFAWGYNNCGQVGSGTTTNQATPRKV 181

Query: 177 Q---GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233
               G  +V  IA G   ++AL ++G ++ WG N  GQLG G+   +  P  V  L  + 
Sbjct: 182 AACLGTRKVTEIACGQTSSMALLDNGEVYGWGYNGNGQLGVGNNVNQPNPCRVAALQQMI 241

Query: 234 LVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC 293
           +V I  G  H+ ALTD+G VY WG   +G+LG G  +K++ + P K+ L  G     V  
Sbjct: 242 VVQIVCGYAHAMALTDEGSVYAWGANSYGQLGTG--NKANLVTPTKIALDKGR---FVEI 296

Query: 294 GGTH----SVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
           G TH    S A+T+ G ++ +G+        G+ +T+  PME
Sbjct: 297 GATHYNHVSSAITQTGKVYMWGQCR------GQSITS--PME 330



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 18/205 (8%)

Query: 143 GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLE-----------QVKLIAVGAFH 191
           G H +V T  G +++WG         Q+      QGL            +V  +A G+ H
Sbjct: 91  GPHVLVCTDNGDLYSWGH----NGYSQLGNGSTNQGLSPQLITTNLIGRKVVKVACGSHH 146

Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL-TLVDIAAGGWHSTALTDD 250
           +LAL  +G ++AWG N  GQ+G+G T  ++ P  V    G   + +IA G   S AL D+
Sbjct: 147 SLALTLEGEVFAWGYNNCGQVGSGTTTNQATPRKVAACLGTRKVTEIACGQTSSMALLDN 206

Query: 251 GEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
           GEVYGWG   +G+LG G+N       P +V  L    +VQ+ CG  H++ALT +G ++++
Sbjct: 207 GEVYGWGYNGNGQLGVGNNVNQPN--PCRVAALQQMIVVQIVCGYAHAMALTDEGSVYAW 264

Query: 311 GRGDHGRLGYGRKVTTGQPMEVPIN 335
           G   +G+LG G K     P ++ ++
Sbjct: 265 GANSYGQLGTGNKANLVTPTKIALD 289



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 18/208 (8%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +  P  +  ++Q  +        + + +D  ++A G+N    LG GD Q   
Sbjct: 14  WP---IFSLLDPEFISSIKQACVFGSSGNEAIVITQDDDVYALGSNCSSCLGVGDAQSGL 70

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  L    +VDI  G G H    TD+G++Y WG   + +LG G  ++   + PQ +
Sbjct: 71  EPRKIDILCKKKIVDIGYGSGPHVLVCTDNGDLYSWGHNGYSQLGNGSTNQG--LSPQLI 128

Query: 281 NL-LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
              L G  +V+V+CG  HS+ALT +G +F++G  + G++G G   TT Q          P
Sbjct: 129 TTNLIGRKVVKVACGSHHSLALTLEGEVFAWGYNNCGQVGSG--TTTNQ--------ATP 178

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           R     +  R + + +ACG   ++A+++
Sbjct: 179 RKVAACLGTRKVTE-IACGQTSSMALLD 205



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 32/175 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKA-LEPYKVRSVVAGSRNSLAICDDGKTK----- 60
           + AWG    GQ+G G    +     V A L   KV  +  G  +S+A+ D+G+       
Sbjct: 156 VFAWGYNNCGQVGSGTTTNQATPRKVAACLGTRKVTEIACGQTSSMALLDNGEVYGWGYN 215

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P +V AL    +VQ   G  H +A+ D+G  YAWG N YGQ G  
Sbjct: 216 GNGQLGVGNNVNQPNPCRVAALQQMIVVQIVCGYAHAMALTDEGSVYAWGANSYGQLG-- 273

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH----SVVLTREGHVWTWGQ 160
                 TG   + ++V P + A     R V  G TH    S  +T+ G V+ WGQ
Sbjct: 274 ------TGN--KANLVTPTKIALDK-GRFVEIGATHYNHVSSAITQTGKVYMWGQ 319


>gi|218197208|gb|EEC79635.1| hypothetical protein OsI_20852 [Oryza sativa Indica Group]
          Length = 1038

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 147/335 (43%), Gaps = 67/335 (20%)

Query: 64  IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           IP  + +     + Q A G  H      QG  + WG    G+ G   +           D
Sbjct: 251 IPKPLESDVVLDVQQIACGSRHIGLTTRQGEVFTWGEELGGRLGHGTDT----------D 300

Query: 124 IVIPQRCAPKLI-------VRQVAAGGTHSVVLTREGHVWTWG---------------QP 161
           I     C PKL+       V  +A G  H+ V+T  G ++ WG                 
Sbjct: 301 I-----CRPKLVESLAVSNVEYIACGEFHTCVVTASGDLYDWGDGSYNAGLLGHGTGVSH 355

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           W P   K++S P+  +GL QV  +A G++H+      G L+ +G+  +G LG GD +  +
Sbjct: 356 WLP---KRVSGPL--EGL-QVLSVACGSWHSALTMSSGKLFTFGDGTFGSLGHGDRESVA 409

Query: 222 QPIPVQGLSGLTLVDIAAGGWHSTALTD----------DGEVYGWGRGEHGRLGFGDNDK 271
            P  V+ LSG   + +A G WHS A+ +            +++ WG G+  RLG G  DK
Sbjct: 410 YPKEVEALSGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHG--DK 467

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331
            +K+VP  V  L   +  QV+CG + +VAL   GH+F+ G  ++G+LG   K    QP  
Sbjct: 468 EAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVFTMGSSNNGQLG-NPKADGKQPCM 526

Query: 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
           V           D +    + + ++CG  H  A+ 
Sbjct: 527 VQ----------DKLGNELVEE-ISCGSNHVAALT 550



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 26/229 (11%)

Query: 153 GHVWTWGQPWP---PGDIKQ----------ISVPVRVQGLEQVKLIAVGAFHNLALQEDG 199
           G V+ WG+ W    P +             I  P+    +  V+ IA G+ H       G
Sbjct: 221 GDVYVWGEVWTEVLPSEGSSNYLCSKTDFLIPKPLESDVVLDVQQIACGSRHIGLTTRQG 280

Query: 200 ALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259
            ++ WG    G+LG G      +P  V+ L+   +  IA G +H+  +T  G++Y WG G
Sbjct: 281 EVFTWGEELGGRLGHGTDTDICRPKLVESLAVSNVEYIACGEFHTCVVTASGDLYDWGDG 340

Query: 260 EHGRLGFGDNDKSSKMVPQKVN-LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
            +     G     S  +P++V+  L G  ++ V+CG  HS      G +F+FG G  G L
Sbjct: 341 SYNAGLLGHGTGVSHWLPKRVSGPLEGLQVLSVACGSWHSALTMSSGKLFTFGDGTFGSL 400

Query: 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+G + +   P EV         A  G    + A  VACG  H+ AIVE
Sbjct: 401 GHGDRESVAYPKEV--------EALSG----FRAMKVACGVWHSAAIVE 437



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 103/258 (39%), Gaps = 33/258 (12%)

Query: 64  IPSQVNA-LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRR 122
           +P +V+  L   +++  A G WH       G+ + +G   +G  G             R 
Sbjct: 357 LPKRVSGPLEGLQVLSVACGSWHSALTMSSGKLFTFGDGTFGSLGHGD----------RE 406

Query: 123 DIVIPQRCAPKLIVR--QVAAGGTHSVVLTR----------EGHVWTWG----QPWPPGD 166
            +  P+        R  +VA G  HS  +               ++TWG         GD
Sbjct: 407 SVAYPKEVEALSGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGD 466

Query: 167 IKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224
            +   VP  VQ L       +A G    +AL   G ++  G++  GQLG      + QP 
Sbjct: 467 KEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVFTMGSSNNGQLGNPKADGK-QPC 525

Query: 225 PVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
            VQ   G  LV+ I+ G  H  ALT   EVY WG G +GRLG G  +   K  P  V+ L
Sbjct: 526 MVQDKLGNELVEEISCGSNHVAALTSRSEVYTWGMGANGRLGHGSVEDKKK--PTLVDAL 583

Query: 284 AGEDIVQVSCGGTHSVAL 301
               +  +SCG   +  +
Sbjct: 584 KDRHVKSISCGSNFTTCI 601



 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAIC 54
           + S + +  WG G +G+LG G+ E+++   +V AL+   V+S+  GS  +  IC
Sbjct: 549 LTSRSEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDRHVKSISCGSNFTTCIC 602


>gi|344281808|ref|XP_003412669.1| PREDICTED: RCC1 and BTB domain-containing protein 2 [Loxodonta
           africana]
          Length = 551

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 26/232 (11%)

Query: 143 GTHSVVLTREGHVWTWGQPWPP----GDIKQISVPVRVQ---GLEQVKLIAVGAFHNLAL 195
           G H V+ T EG V+TWG         G      VP  +      +QV  +A G++H+L L
Sbjct: 108 GPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCYISTNLSNKQVIEVACGSYHSLVL 167

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIP--VQG-LSGLTLVDIAAGGWHSTALTDDGE 252
             DG ++AWG N  GQ+G+G T   +QPIP  V G L    +V+IA G   S A+ D GE
Sbjct: 168 TSDGEVFAWGYNNSGQVGSGSTA--NQPIPRRVTGCLQNKAVVNIACGQMCSMAVVDAGE 225

Query: 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
           VY WG   +G+LG G +   ++  P +V  L G  + +V+CG  H++ LT +G ++++G 
Sbjct: 226 VYVWGYNGNGQLGLGSS--GNQPTPCRVAALQGIHVQRVACGYAHTLVLTDEGQVYAWGA 283

Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA 364
             +G+LG G K  + Q    PI++   R          I ++ AC   HT A
Sbjct: 284 NSYGQLGTGNK--SNQSYPTPISVEKDR----------IIEIAACHSTHTSA 323



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 18/257 (7%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P ++++LS  KI   + G G H +    +G  + WG N Y Q G            +  +
Sbjct: 89  PRRLDSLSGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCYISTN 148

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP----PGDIKQISVPVRVQGL 179
           +   Q       V +VA G  HS+VLT +G V+ WG         G      +P RV G 
Sbjct: 149 LSNKQ-------VIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGC 201

Query: 180 EQVKL---IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            Q K    IA G   ++A+ + G ++ WG N  GQLG G +  +  P  V  L G+ +  
Sbjct: 202 LQNKAVVNIACGQMCSMAVVDAGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIHVQR 261

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +A G  H+  LTD+G+VY WG   +G+LG G  +KS++  P  +++     I   +C  T
Sbjct: 262 VACGYAHTLVLTDEGQVYAWGANSYGQLGTG--NKSNQSYPTPISVEKDRIIEIAACHST 319

Query: 297 H-SVALTRDGHIFSFGR 312
           H S A T+ G+++ +G+
Sbjct: 320 HTSAAKTQGGNVYMWGQ 336



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 18/208 (8%)

Query: 162 WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221
           WP   I  +     +Q + Q  +    +   L    +  ++  G N  G LG GD Q   
Sbjct: 31  WP---IFSLCSEEELQLIRQACVFGSASNEVLYTTVNNEIFVLGTNCCGCLGLGDVQSTI 87

Query: 222 QPIPVQGLSGLTLVDIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
           +P  +  LSG  +  ++ G G H    T +GEV+ WG   + +LG G  +    +VP  +
Sbjct: 88  EPRRLDSLSGKKIACLSYGSGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHG--LVPCYI 145

Query: 281 NL-LAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
           +  L+ + +++V+CG  HS+ LT DG +F++G  + G++G G             N P P
Sbjct: 146 STNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTA----------NQPIP 195

Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           R     +  + +   +ACG   ++A+V+
Sbjct: 196 RRVTGCLQNKAVVN-IACGQMCSMAVVD 222



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 26/178 (14%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVC-VVKALEPYKVRSVVAGSRNSLAICDDGKT 59
           + S   + AWG    GQ+G G+   +     V   L+   V ++  G   S+A+ D G+ 
Sbjct: 167 LTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKAVVNIACGQMCSMAVVDAGEV 226

Query: 60  KT----------------ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                             +  P +V AL    + + A G  H L + D+G+ YAWG N Y
Sbjct: 227 YVWGYNGNGQLGLGSSGNQPTPCRVAALQGIHVQRVACGYAHTLVLTDEGQVYAWGANSY 286

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH-SVVLTREGHVWTWGQ 160
           GQ G        TG    +    P       I+   A   TH S   T+ G+V+ WGQ
Sbjct: 287 GQLG--------TGNKSNQSYPTPISVEKDRIIEIAACHSTHTSAAKTQGGNVYMWGQ 336


>gi|146295924|ref|YP_001179695.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409500|gb|ABP66504.1| regulator of chromosome condensation, RCC1 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 730

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 40/316 (12%)

Query: 39  KVRSVVAGSRNSLAICDDGKT---------KTENIPSQVNALSNTKIVQAAIGGW-HCLA 88
           K+  V  G   +LAI ++G+          ++  +P++V  + + KI +A   GW H LA
Sbjct: 47  KIVYVDTGGNQNLAITENGELYEWELGGTLESRYLPTKV--MEHVKIAKA---GWAHVLA 101

Query: 89  VDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSV 147
           +D  G  Y WG NEYGQ G+   E K    +IL               V  +AAG  HS+
Sbjct: 102 IDQSGNLYCWGNNEYGQLGDGTKESKTTPVKILGN-------------VVAIAAGNYHSL 148

Query: 148 VLTREGHVWTWG--QPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWG 205
            +T+ G ++ WG       G+  ++     ++ +  VK +A G + + A+ ++G L+ WG
Sbjct: 149 AVTKNGDLYAWGLNDRGQLGNGTRVDCNKPIKIMTNVKDVAAGWYTSFAITKNGDLYGWG 208

Query: 206 NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
            NE GQLG G    + +P+ +  +SG+    ++AG  H  ALT  GE+Y WG      LG
Sbjct: 209 ANEVGQLGDGSKIDKIKPVKI--MSGVQ--SVSAGSNHVLALTKKGELYAWGYNNDSELG 264

Query: 266 FGDN-DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL---GYG 321
           F     K+    P +VN    + I  +  G ++S+ + ++G ++  GRG    +      
Sbjct: 265 FDPGWGKNFSEKPVRVNFKDIKGISYIYAGESYSLLIDKNGVLWGLGRGYTDTIVIKNKF 324

Query: 322 RKVTTGQPMEV-PINI 336
           R+   G+ ME  P+ I
Sbjct: 325 RQSNNGKLMEFKPVKI 340



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 118/232 (50%), Gaps = 31/232 (13%)

Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
           +  V  GG  ++ +T  G ++ W      G ++   +P +V  +E VK+   G  H LA+
Sbjct: 48  IVYVDTGGNQNLAITENGELYEWELG---GTLESRYLPTKV--MEHVKIAKAGWAHVLAI 102

Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
            + G L+ WGNNEYGQLG G  + ++ P+ + G     +V IAAG +HS A+T +G++Y 
Sbjct: 103 DQSGNLYCWGNNEYGQLGDGTKESKTTPVKILG----NVVAIAAGNYHSLAVTKNGDLYA 158

Query: 256 WGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDH 315
           WG  + G+LG G     +K +    N      +  V+ G   S A+T++G ++ +G  + 
Sbjct: 159 WGLNDRGQLGNGTRVDCNKPIKIMTN------VKDVAAGWYTSFAITKNGDLYGWGANEV 212

Query: 316 GRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
           G+LG G K+   +P+++   + +                V+ G  H LA+ +
Sbjct: 213 GQLGDGSKIDKIKPVKIMSGVQS----------------VSAGSNHVLALTK 248



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 169/368 (45%), Gaps = 76/368 (20%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
           ++  WG+ E GQLG G  E +     VK L    V ++ AG+ +SLA+  +G        
Sbjct: 107 NLYCWGNNEYGQLGDGTKESK--TTPVKILG--NVVAIAAGNYHSLAVTKNGDLYAWGLN 162

Query: 59  --------TKTE-NIPSQVNALSNTKIVQAAIGGWHC-LAVDDQGRAYAWGGNEYGQCGE 108
                   T+ + N P ++  ++N K V A   GW+   A+   G  Y WG NE GQ G 
Sbjct: 163 DRGQLGNGTRVDCNKPIKI--MTNVKDVAA---GWYTSFAITKNGDLYGWGANEVGQLG- 216

Query: 109 EPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP------W 162
                 D  +I   D + P +      V+ V+AG  H + LT++G ++ WG        +
Sbjct: 217 ------DGSKI---DKIKPVKIMSG--VQSVSAGSNHVLALTKKGELYAWGYNNDSELGF 265

Query: 163 PPGDIKQIS-VPVRV--QGLEQVKLIAVGAFHNLALQEDGALWAWG---------NNEYG 210
            PG  K  S  PVRV  + ++ +  I  G  ++L + ++G LW  G          N++ 
Sbjct: 266 DPGWGKNFSEKPVRVNFKDIKGISYIYAGESYSLLIDKNGVLWGLGRGYTDTIVIKNKFR 325

Query: 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDND 270
           Q   G         PV+ +S + L   A+G     A+T D ++Y +     G   FG   
Sbjct: 326 QSNNGKLMEFK---PVKIMSNVML---ASG---KLAVTKDKKLYIFCNNT-GPFIFG--- 372

Query: 271 KSSKMVPQKVN--LLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQ 328
                 P++V+  +L  +++   S G  HS+ALT+DG ++ +G   + +LG G K    +
Sbjct: 373 -----APERVDRPVLIMKNVSLCSAGADHSLALTKDGKLYGWGNNSYNQLGNGTKNPLCR 427

Query: 329 PMEVPINI 336
           P ++ IN+
Sbjct: 428 PTKIDINV 435



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 51/330 (15%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYK----VRSVVAGSRNSLAICDDG----- 57
           +  WG+ E GQLG G+  ++        ++P K    V+SV AGS + LA+   G     
Sbjct: 204 LYGWGANEVGQLGDGSKIDK--------IKPVKIMSGVQSVSAGSNHVLALTKKGELYAW 255

Query: 58  ---------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG-GN 101
                          K  +E  P +VN      I     G  + L +D  G  +  G G 
Sbjct: 256 GYNNDSELGFDPGWGKNFSEK-PVRVNFKDIKGISYIYAGESYSLLIDKNGVLWGLGRGY 314

Query: 102 EYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ- 160
                 +   R+ + G+++    V       K++   + A G  +V   ++ +++     
Sbjct: 315 TDTIVIKNKFRQSNNGKLMEFKPV-------KIMSNVMLASGKLAVTKDKKLYIFCNNTG 367

Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
           P+  G  +++  PV +  ++ V L + GA H+LAL +DG L+ WGNN Y QLG G   P 
Sbjct: 368 PFIFGAPERVDRPVLI--MKNVSLCSAGADHSLALTKDGKLYGWGNNSYNQLGNGTKNPL 425

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
            +P  +    G  ++ I AG   S  +   GE++GWG   +  + F +N   SK  P+ V
Sbjct: 426 CRPTKIDINVG-EIIGILAGTQRSFLINKKGELFGWGSNINNTIDFSNNKIISK--PKMV 482

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310
                ++I QV      +  +T++G +++ 
Sbjct: 483 ----LKEIRQVDTNQNETFVVTKNGKMYAL 508



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 19/158 (12%)

Query: 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239
           +++  +  G   NLA+ E+G L+ W      +LG G  + R  P  V     +  V IA 
Sbjct: 46  KKIVYVDTGGNQNLAITENGELYEW------ELG-GTLESRYLPTKV-----MEHVKIAK 93

Query: 240 GGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHS 298
            GW H  A+   G +Y WG  E+G+L  GD  K SK  P K+      ++V ++ G  HS
Sbjct: 94  AGWAHVLAIDQSGNLYCWGNNEYGQL--GDGTKESKTTPVKI----LGNVVAIAAGNYHS 147

Query: 299 VALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINI 336
           +A+T++G ++++G  D G+LG G +V   +P+++  N+
Sbjct: 148 LAVTKNGDLYAWGLNDRGQLGNGTRVDCNKPIKIMTNV 185



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 149/332 (44%), Gaps = 43/332 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPY--KVRSVVAGSRNSLAICDDGKTKT--E 62
           +  WG+    QLG   N  +  +C    ++    ++  ++AG++ S  I   G+      
Sbjct: 406 LYGWGNNSYNQLG---NGTKNPLCRPTKIDINVGEIIGILAGTQRSFLINKKGELFGWGS 462

Query: 63  NIPSQVNALSNTKIV-----------QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111
           NI + ++  SN KI+           Q          V   G+ YA           + E
Sbjct: 463 NINNTID-FSNNKIISKPKMVLKEIRQVDTNQNETFVVTKNGKMYAL------IFVVQAE 515

Query: 112 RKDDTGRILRRDIVIPQRCAPKLIVRQV--AAGGTHSVVLTREGHVWTW-GQPWPPGDIK 168
           R  DT   L+  I+   R     I   V   + G  +++L ++G ++   G+    G   
Sbjct: 516 R--DT---LKWQIIKENRQKMYNITNNVDKISAGYQTLILKKDGTLYALKGKTSWKGSHT 570

Query: 169 QISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNN-EYGQLGTGDTQPRSQ-PIPV 226
           QI   V  + L  V  +A G  H LA+ +DG+L+AWG++  +G++G G   P  +   PV
Sbjct: 571 QIESYVIEKVLNNVVSMASGYDHCLAVTKDGSLYAWGSDPAHGEIGNGIAIPNLRIDKPV 630

Query: 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286
           + +  + +V  AAG   S ALT +GEVY WG      LG    D  S   P+ V +  G 
Sbjct: 631 KVMDNVKMV--AAGANRSFALTKNGEVYAWGF----NLGTLGTDTDSWYEPRPVKVFEGA 684

Query: 287 DIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318
             V +SC G H +ALTR+G ++ +G    G++
Sbjct: 685 --VWISCKGGHVLALTREGDLYGWGDNSLGQV 714


>gi|405950964|gb|EKC18916.1| RCC1 and BTB domain-containing protein 1 [Crassostrea gigas]
          Length = 531

 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 24/260 (9%)

Query: 65  PSQVNALSNTKIVQAAIG-GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123
           P +V+ L   KIV  A G G H LAV   G  Y+WG N Y Q G     +  T  ++  +
Sbjct: 65  PRKVDVLCKKKIVDIAFGSGPHVLAVSKNGEMYSWGHNGYCQLGNGGSGQGLTPTLINTN 124

Query: 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVP---VRV 176
           +        K I+R VA G  HS+ L++EG ++ WGQ        G       P   V V
Sbjct: 125 L------QGKKILR-VACGSHHSMALSQEGEIFAWGQNNCGQVGSGSTTNQPTPRKVVAV 177

Query: 177 QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236
            G +    IA G   ++AL E+G ++ WG N  GQLG G+   +  P  VQ L G+ +  
Sbjct: 178 IGNKMALSIACGQTSSMALLENGEVYGWGYNGNGQLGLGNNVNQPNPCRVQQLQGVIISQ 237

Query: 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT 296
           +  G  H+ AL+D+G ++ WG   +G+LG G  +K++++ P KV  + GE +V+++   +
Sbjct: 238 LVCGYAHTLALSDEGSLFSWGANSYGQLGTG--NKANQVSPSKVP-MNGERMVEIA--AS 292

Query: 297 H----SVALTRDGHIFSFGR 312
           H    S A++  G +F +G+
Sbjct: 293 HYAHISAAMSETGKVFMWGQ 312



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 12/212 (5%)

Query: 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQP--WPPGD------IKQISVPVRVQGLEQVKL 184
           K IV      G H + +++ G +++WG       G+      +    +   +QG +++  
Sbjct: 74  KKIVDIAFGSGPHVLAVSKNGEMYSWGHNGYCQLGNGGSGQGLTPTLINTNLQG-KKILR 132

Query: 185 IAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL-VDIAAGGWH 243
           +A G+ H++AL ++G ++AWG N  GQ+G+G T  +  P  V  + G  + + IA G   
Sbjct: 133 VACGSHHSMALSQEGEIFAWGQNNCGQVGSGSTTNQPTPRKVVAVIGNKMALSIACGQTS 192

Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
           S AL ++GEVYGWG   +G+LG G+N       P +V  L G  I Q+ CG  H++AL+ 
Sbjct: 193 SMALLENGEVYGWGYNGNGQLGLGNNVNQPN--PCRVQQLQGVIISQLVCGYAHTLALSD 250

Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335
           +G +FS+G   +G+LG G K     P +VP+N
Sbjct: 251 EGSLFSWGANSYGQLGTGNKANQVSPSKVPMN 282



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 18/194 (9%)

Query: 179 LEQVKLIAV-GAFHNLAL--QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLV 235
           LE++K I V G+  N A+    D  ++A G+N    LG GD     +P  V  L    +V
Sbjct: 18  LEKIKKICVFGSSGNEAIYITNDDEVYAIGSNCSSCLGLGDAHSSFEPRKVDVLCKKKIV 77

Query: 236 DIAAG-GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL-LAGEDIVQVSC 293
           DIA G G H  A++ +GE+Y WG   + +LG G + +   + P  +N  L G+ I++V+C
Sbjct: 78  DIAFGSGPHVLAVSKNGEMYSWGHNGYCQLGNGGSGQG--LTPTLINTNLQGKKILRVAC 135

Query: 294 GGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAK 353
           G  HS+AL+++G IF++G+ + G++G G   TT Q        P PR     +  + +A 
Sbjct: 136 GSHHSMALSQEGEIFAWGQNNCGQVGSGS--TTNQ--------PTPRKVVAVIGNK-MAL 184

Query: 354 LVACGGRHTLAIVE 367
            +ACG   ++A++E
Sbjct: 185 SIACGQTSSMALLE 198



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 32/175 (18%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVR-SVVAGSRNSLAICDDGKTK----- 60
           I AWG    GQ+G G+   +     V A+   K+  S+  G  +S+A+ ++G+       
Sbjct: 149 IFAWGQNNCGQVGSGSTTNQPTPRKVVAVIGNKMALSIACGQTSSMALLENGEVYGWGYN 208

Query: 61  -----------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                       +  P +V  L    I Q   G  H LA+ D+G  ++WG N YGQ G  
Sbjct: 209 GNGQLGLGNNVNQPNPCRVQQLQGVIISQLVCGYAHTLALSDEGSLFSWGANSYGQLG-- 266

Query: 110 PERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH----SVVLTREGHVWTWGQ 160
                 TG   + + V P +  P    R V    +H    S  ++  G V+ WGQ
Sbjct: 267 ------TGN--KANQVSPSK-VPMNGERMVEIAASHYAHISAAMSETGKVFMWGQ 312


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.136    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,789,709,790
Number of Sequences: 23463169
Number of extensions: 314567109
Number of successful extensions: 777024
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4879
Number of HSP's successfully gapped in prelim test: 1106
Number of HSP's that attempted gapping in prelim test: 639013
Number of HSP's gapped (non-prelim): 42065
length of query: 374
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 230
effective length of database: 8,980,499,031
effective search space: 2065514777130
effective search space used: 2065514777130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)