BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038610
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 43/357 (12%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
+ S + +WG GEDGQLG G+ E+R + AL+ +++ SV G+ +++A G
Sbjct: 19 LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 78
Query: 58 --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
+ P + AL +I Q A G HCLAV +G +WG N+
Sbjct: 79 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN 138
Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
GQ G DT D ++PQ+ + ++ VAAG H+ +T +G ++ WG
Sbjct: 139 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186
Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
W GD VP RV G E++ ++A G H +++ GAL+ +G ++YGQLG
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 246
Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
GD + P ++ LS + I+ G H+ ALT DG++YGWG + G++G G+N D+
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 306
Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
S P +V + +VQVSCG H++A+T ++F++GRG +G+LG G V P
Sbjct: 307 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 31/301 (10%)
Query: 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
K++ + G H +A+ +WG E GQ G + E + ++ D
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 55
Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
+ V G H+V ++ G + W WG G+ + P+ ++ L ++K IA
Sbjct: 56 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115
Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
G H LA+ +G + +WG N+ GQLG GDT+ P +Q G+ + +AAG H+ A
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 175
Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
+T+DG++YGWG G +G LG G D++ ++VP++V GE + V+CG H+++++ G
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
++++G +G+LG+G + +P + A N+ ++ G RHT+A+
Sbjct: 234 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGFRHTMALT 281
Query: 367 E 367
Sbjct: 282 S 282
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 21/242 (8%)
Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKL 184
AP V ++AG +HSV L V +WG+ GD + P ++ L+ Q+
Sbjct: 1 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 60
Query: 185 IAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
+ GA H +A + G +++WG ++G+LG G++ P+P++ L G+ + IA G H
Sbjct: 61 VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSH 120
Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
A+T +GEV WGR ++G+LG GD + S +VPQK+ G I V+ G H+ A+T
Sbjct: 121 CLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178
Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
DG ++ +G G +G LG G + P V G+ + +VACG RHT+
Sbjct: 179 DGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------SMVACGWRHTI 226
Query: 364 AI 365
++
Sbjct: 227 SV 228
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 34/248 (13%)
Query: 7 IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
+ +WG ++GQLG+G+ E+ ++A E +++ V AG+ ++ A+ +DG
Sbjct: 130 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 189
Query: 60 --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
+T+ +P +V + K+ A G H ++V G Y +G ++YGQ G
Sbjct: 190 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 249
Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
D +IP + + Q++ G H++ LT +G ++ WG Q
Sbjct: 250 ----------LEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGV 299
Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
++ Q S V VR ++V ++ G H LA+ E ++AWG GQLG G++ R+
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Query: 223 PIPVQGLS 230
P ++ LS
Sbjct: 360 PKIIEALS 367
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 5 TSIIAWGSGEDGQLGIGNNEEREWVCVVKALE 36
++ AWG G +GQLGIG + +R + +++AL
Sbjct: 336 NNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
+ S + WG + GQ+G+GNN ++ V+ + KV V G R++LA+ +
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 339
Query: 57 ------------GKTKTENIPSQVNALS 72
G++ N P + ALS
Sbjct: 340 AWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 43/351 (12%)
Query: 7 IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
+ +WG GEDGQLG G+ E+R + AL+ +++ SV G+ +++A G
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 96
Query: 58 --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
+ P + AL +I Q A G HCLAV +G +WG N+ GQ G
Sbjct: 97 DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 154
Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
DT D ++PQ+ + ++ VAAG H+ +T +G ++ WG W
Sbjct: 155 ---LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 204
Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
GD VP RV G E++ ++A G H +++ GAL+ +G ++YGQLG GD +
Sbjct: 205 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 264
Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
P ++ LS + I+ G H+ ALT DG++YGWG + G++G G+N D+ S P
Sbjct: 265 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PV 321
Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
+V + +VQVSCG H++A+T ++F++GRG +G+LG G V P
Sbjct: 322 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 372
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 151/300 (50%), Gaps = 31/300 (10%)
Query: 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
K++ + G H +A+ +WG E GQ G + E + ++ D
Sbjct: 17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 67
Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
+ V G H+V ++ G + W WG G+ + P+ ++ L ++K IA
Sbjct: 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 127
Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
G H LA+ +G + +WG N+ GQLG GDT+ P +Q G+ + +AAG H+ A
Sbjct: 128 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 187
Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
+T+DG++YGWG G +G LG G D++ ++VP++V GE + V+CG H+++++ G
Sbjct: 188 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
++++G +G+LG+G + +P + A N+ ++ G RHT+A+
Sbjct: 246 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGWRHTMALT 293
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 131/253 (51%), Gaps = 21/253 (8%)
Query: 120 LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVR 175
+ D+ + AP V ++AG +HSV L V +WG+ GD + P +
Sbjct: 2 MAEDMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ 61
Query: 176 VQGLE--QVKLIAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232
+ L+ Q+ + GA H +A + G +++WG ++G+LG G++ P+P++ L G+
Sbjct: 62 LSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGI 121
Query: 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292
+ IA G H A+T +GEV WGR ++G+LG GD + S +VPQK+ G I V+
Sbjct: 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVA 179
Query: 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIA 352
G H+ A+T DG ++ +G G +G LG G + P V G+ +
Sbjct: 180 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------ 227
Query: 353 KLVACGGRHTLAI 365
+VACG RHT+++
Sbjct: 228 SMVACGWRHTISV 240
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 38/293 (12%)
Query: 3 STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---- 58
S + +WG G+ G+LG GN+ + +KAL +++ + G + LA+ +G+
Sbjct: 86 SGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSW 145
Query: 59 ------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQC 106
T+ +P ++ A +I A G H AV + G Y WG YG
Sbjct: 146 GRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNL 205
Query: 107 GEEPERKDDTGRILRRDIVIPQRCAPK--LIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
G R D ++P+R + VA G H++ ++ G ++T+G W
Sbjct: 206 GLGD----------RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG--WSK 253
Query: 165 ------GDIKQISVPVRVQGLEQ--VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD 216
GD++ +P +++ L + I+ G H +AL DG L+ WG N++GQ+G G+
Sbjct: 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313
Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269
+ P+ V+ +V ++ G H+ A+T+ V+ WGRG +G+LG G++
Sbjct: 314 NLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 366
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 38/258 (14%)
Query: 7 IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
+ +WG ++GQLG+G+ E+ ++A E +++ V AG+ ++ A+ +DG
Sbjct: 142 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 201
Query: 60 --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
+T+ +P +V + K+ A G H ++V G Y +G ++YGQ G
Sbjct: 202 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 261
Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
D +IP + + Q++ G H++ LT +G ++ WG Q
Sbjct: 262 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 311
Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
++ Q S V VR ++V ++ G H LA+ E ++AWG GQLG G++ R+
Sbjct: 312 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 371
Query: 223 PIPVQGLSGLTLVDIAAG 240
P ++ LS VD A+G
Sbjct: 372 PKIIEALS----VDGASG 385
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 5 TSIIAWGSGEDGQLGIGNNEEREWVCVVKAL 35
++ AWG G +GQLGIG + +R + +++AL
Sbjct: 348 NNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
+ S + WG + GQ+G+GNN ++ V+ + KV V G R++LA+ +
Sbjct: 292 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 351
Query: 57 ------------GKTKTENIPSQVNALS 72
G++ N P + ALS
Sbjct: 352 AWGRGTNGQLGIGESVDRNFPKIIEALS 379
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 43/357 (12%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
+ S + +WG GEDGQLG G+ E+R + AL+ +++ SV G+ +++A G
Sbjct: 19 LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 78
Query: 58 --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
+ P + AL +I Q A G HCLAV +G +WG N+
Sbjct: 79 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN 138
Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
GQ G DT D ++PQ+ + ++ VAAG H+ +T +G ++ WG
Sbjct: 139 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186
Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
W GD VP RV G E++ ++A G H +++ GAL+ +G ++YGQLG
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 246
Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
GD + P ++ LS + I+ G H+ ALT DG++YGWG + G++G G+N D+
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 306
Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
S P +V + +VQVSCG H++A+T ++F++GRG +G+LG G V P
Sbjct: 307 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 31/301 (10%)
Query: 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
K++ + G H +A+ +WG E GQ G + E + ++ D
Sbjct: 5 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 55
Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
+ V G H+V ++ G + W WG G+ + P+ ++ L ++K IA
Sbjct: 56 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 115
Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
G H LA+ +G + +WG N+ GQLG GDT+ P +Q G+ + +AAG H+ A
Sbjct: 116 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 175
Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
+T+DG++YGWG G +G LG G D++ ++VP++V GE + V+CG H+++++ G
Sbjct: 176 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
++++G +G+LG+G + +P + A N+ ++ G RHT+A+
Sbjct: 234 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGWRHTMALT 281
Query: 367 E 367
Sbjct: 282 S 282
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 21/242 (8%)
Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKL 184
AP V ++AG +HSV L V +WG+ GD + P ++ L+ Q+
Sbjct: 1 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 60
Query: 185 IAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
+ GA H +A + G +++WG ++G+LG G++ P+P++ L G+ + IA G H
Sbjct: 61 VTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSH 120
Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
A+T +GEV WGR ++G+LG GD + S +VPQK+ G I V+ G H+ A+T
Sbjct: 121 CLAVTMEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178
Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
DG ++ +G G +G LG G + P V G+ + +VACG RHT+
Sbjct: 179 DGDLYGWGWGRYGNLGLGDRTDRLVPERV------TSTGGEKM------SMVACGWRHTI 226
Query: 364 AI 365
++
Sbjct: 227 SV 228
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 123/258 (47%), Gaps = 38/258 (14%)
Query: 7 IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
+ +WG ++GQLG+G+ E+ ++A E +++ V AG+ ++ A+ +DG
Sbjct: 130 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGR 189
Query: 60 --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
+T+ +P +V + K+ A G H ++V G Y +G ++YGQ G
Sbjct: 190 YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 249
Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
D +IP + + Q++ G H++ LT +G ++ WG Q
Sbjct: 250 ----------LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 299
Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
++ Q S V VR ++V ++ G H LA+ E ++AWG GQLG G++ R+
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Query: 223 PIPVQGLSGLTLVDIAAG 240
P ++ LS VD A+G
Sbjct: 360 PKIIEALS----VDGASG 373
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 5 TSIIAWGSGEDGQLGIGNNEEREWVCVVKALE 36
++ AWG G +GQLGIG + +R + +++AL
Sbjct: 336 NNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
+ S + WG + GQ+G+GNN ++ V+ + KV V G R++LA+ +
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 339
Query: 57 ------------GKTKTENIPSQVNALS 72
G++ N P + ALS
Sbjct: 340 AWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 183/357 (51%), Gaps = 43/357 (12%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
+ S + +WG GEDGQLG G+ E+R + AL+ +++ SV G+ +++A G
Sbjct: 21 LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEV 80
Query: 58 --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
+ P + AL +I Q A G HCLAV +G +WG N+
Sbjct: 81 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQN 140
Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
GQ G DT D ++PQ+ + ++ VAAG H+ +T +G ++ WG
Sbjct: 141 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWG-- 188
Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
W GD VP RV G E+ +A G H +++ GAL+ +G ++YGQLG
Sbjct: 189 WGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLG 248
Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
GD + P ++ LS + I+ G H+ ALT DG++YGWG + G++G G+N D+
Sbjct: 249 HGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQC 308
Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
S P +V + +VQVSCG H++A+T ++F++GRG +G+LG G V P
Sbjct: 309 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 362
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 31/301 (10%)
Query: 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE-EPERKDDTGRILRRDIVIPQRCAPK 133
K++ + G H +A+ +WG E GQ G + E + ++ D
Sbjct: 7 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD---------G 57
Query: 134 LIVRQVAAGGTHSVVLTREG---HVWTWGQ--PWPPGDIKQISVPVRVQGLE--QVKLIA 186
+ V G H+V ++ G + W WG G+ + P+ ++ L ++K IA
Sbjct: 58 HQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 117
Query: 187 VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
G H LA+ +G + +WG N+ GQLG GDT+ P +Q G+ + +AAG H+ A
Sbjct: 118 CGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAA 177
Query: 247 LTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGH 306
+T+DG++YGWG G +G LG G D++ ++VP++V GE V+CG H+++++ G
Sbjct: 178 VTEDGDLYGWGWGRYGNLGLG--DRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 307 IFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366
++++G +G+LG+G + +P + A N+ ++ G RHT A+
Sbjct: 236 LYTYGWSKYGQLGHGDL----EDHLIPHKLEALSNS--------FISQISGGARHTXALT 283
Query: 367 E 367
Sbjct: 284 S 284
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 126/242 (52%), Gaps = 21/242 (8%)
Query: 131 APKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLE--QVKL 184
AP V ++AG +HSV L V +WG+ GD + P ++ L+ Q+
Sbjct: 3 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS 62
Query: 185 IAVGAFHNLALQEDGA-LWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWH 243
+ GA H +A + G +++WG ++G+LG G++ P+P++ L G+ + IA G H
Sbjct: 63 VTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSH 122
Query: 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
A+T +GEV WGR ++G+LG GD + S +VPQK+ G I V+ G H+ A+T
Sbjct: 123 CLAVTXEGEVQSWGRNQNGQLGLGDTEDS--LVPQKIQAFEGIRIKXVAAGAEHTAAVTE 180
Query: 304 DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTL 363
DG ++ +G G +G LG G + P V G ++ VACG RHT+
Sbjct: 181 DGDLYGWGWGRYGNLGLGDRTDRLVPERV---------TSTGGEK---XSXVACGWRHTI 228
Query: 364 AI 365
++
Sbjct: 229 SV 230
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 34/248 (13%)
Query: 7 IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------- 59
+ +WG ++GQLG+G+ E+ ++A E +++ V AG+ ++ A+ +DG
Sbjct: 132 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGR 191
Query: 60 --------KTEN-IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
+T+ +P +V + K A G H ++V G Y +G ++YGQ G
Sbjct: 192 YGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGD 251
Query: 111 ERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWG-----QPWP 163
D +IP + + Q++ G H+ LT +G ++ WG Q
Sbjct: 252 ----------LEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGV 301
Query: 164 PGDIKQIS-VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
++ Q S V VR ++V ++ G H LA+ E ++AWG GQLG G++ R+
Sbjct: 302 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 361
Query: 223 PIPVQGLS 230
P ++ LS
Sbjct: 362 PKIIEALS 369
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 5 TSIIAWGSGEDGQLGIGNNEEREWVCVVKALE 36
++ AWG G +GQLGIG + +R + +++AL
Sbjct: 338 NNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDD---- 56
+ S + WG + GQ+G+GNN ++ V+ + KV V G R++LA+ +
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 341
Query: 57 ------------GKTKTENIPSQVNALS 72
G++ N P + ALS
Sbjct: 342 AWGRGTNGQLGIGESVDRNFPKIIEALS 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 51/393 (12%)
Query: 6 SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK------- 58
+I WG GQLG + + +AL + ++ G + A+ DGK
Sbjct: 21 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80
Query: 59 ---------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCG 107
T++ + P+ + ++ + I + A+ GG HCLA+ +G Y+WG E G+ G
Sbjct: 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG 140
Query: 108 EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWP 163
D R++ I V VAAGG HS +T G ++TWG+
Sbjct: 141 HGNRSPCDRPRVIESLRGIE--------VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Query: 164 PGDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
D + P V+ L+ +++ + G L L +D +W+WG+ +YG+LG G +
Sbjct: 193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDG 252
Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279
P+ + L+GL +V + G S ALT G VY WG+G++ RLG G +D + P++
Sbjct: 253 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR--PRQ 310
Query: 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAP 339
V L G+ ++ ++ G H V T DG ++++G D G+LG G T ++ P + A
Sbjct: 311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDG----TTNAIQRPRLVAAL 366
Query: 340 RNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
+ G V+R VACG HTLA W T +
Sbjct: 367 Q--GKKVNR------VACGSAHTLA---WSTSK 388
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK 60
++S + +WG EDG+LG GN + V+++L +V V AG +S + G
Sbjct: 122 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLY 181
Query: 61 T----------------ENIPSQVNALSNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNE 102
T + P V AL ++V A G L + D ++WG +
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241
Query: 103 YGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-- 160
YG+ G D ++ D + L V +V G SV LT+ G V+TWG+
Sbjct: 242 YGKLGRGGS--DGCKVPMKIDSLT------GLGVVKVECGSQFSVALTKSGAVYTWGKGD 293
Query: 161 --PWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGD 216
G + P +VQGL+ K+IA+ G+ H + EDG ++ WG+N+ GQLG G
Sbjct: 294 YHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT 353
Query: 217 TQPRSQPIPVQGLSGLTLVDIAAGGWHSTA 246
T +P V L G + +A G H+ A
Sbjct: 354 TNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 56/183 (30%)
Query: 192 NLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL------------------- 232
NL Q G ++ WG+N GQLG + P P + L+ L
Sbjct: 13 NLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADG 72
Query: 233 ------------------------TLVD-----------IAAGGWHSTALTDDGEVYGWG 257
TL++ + +GG H AL+ +GEVY WG
Sbjct: 73 KLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132
Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
E G+LG G+ + P+ + L G ++V V+ GG HS +T G ++++G+G +GR
Sbjct: 133 EAEDGKLGHGNRSPCDR--PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGR 190
Query: 318 LGY 320
LG+
Sbjct: 191 LGH 193
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 185/411 (45%), Gaps = 81/411 (19%)
Query: 7 IIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
++ G G+ GQLG+G N ER+ +V P V AG +++ + G+
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCN 86
Query: 61 -------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQ 105
+E +P +V K+VQ + G H A+ D GR + WG + G
Sbjct: 87 DEGALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGV 144
Query: 106 CG-EEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP 164
G EP +K ++P + + V +VA+G H V+LT +G ++T G
Sbjct: 145 IGLLEPMKKS----------MVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLG----C 190
Query: 165 GDIKQI-SVPVRV------QGLEQV---KLIAV----------------GAFHNLALQED 198
G+ Q+ VP QGLE++ K + + GA+ A+ +
Sbjct: 191 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 250
Query: 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL--VDIAAGGWHSTALTDDGEVYGW 256
G ++ +G + Y QLGT T+ P + T V + G H+ + +G+ Y
Sbjct: 251 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 310
Query: 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHG 316
GR E+GRLG G+ + K +P ++ L + V+CG + A+T+DG +F++G G +
Sbjct: 311 GRAEYGRLGLGEGAE-EKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNY 367
Query: 317 RLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
+LG G+ P+E+ G ++ R + V+ GG+HT+ +V+
Sbjct: 368 QLGTGQDEDAWSPVEM---------MGKQLENRVVLS-VSSGGQHTVLLVK 408
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 143/341 (41%), Gaps = 42/341 (12%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
++ + + ++G ++G LG + E + K KV V AG ++ A+ DDG+
Sbjct: 74 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 133
Query: 60 ------------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
K +P QV + +V+ A G H + + G Y G
Sbjct: 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCG 191
Query: 102 EYGQCGEEPERKDDTG------RILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREG 153
E GQ G PE + G R+L V+ + + VR G + ++ EG
Sbjct: 192 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG 251
Query: 154 HVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKL----IAVGAFHNLALQEDGALWAW 204
HV+ +G Q PG + +P + + + G H + + +G ++
Sbjct: 252 HVYGFGLSNYHQLGTPG-TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 310
Query: 205 GNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
G EYG+LG G+ + +S P + L ++ +A G A+T DG V+ WG G + +
Sbjct: 311 GRAEYGRLGLGEGAEEKSIPTLISRLPAVS--SVACGASVGYAVTKDGRVFAWGMGTNYQ 368
Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
LG G ++ + V L ++ VS GG H+V L +D
Sbjct: 369 LGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 30/237 (12%)
Query: 144 THSVVLTREGHVWTWGQPWPPGDIKQISV---------PVRVQGLEQVKLIAVGAFHNLA 194
+H T G V T GQ GD+ Q+ + P V E V G H +
Sbjct: 18 SHRSHSTEPGLVLTLGQ----GDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVC 73
Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
L + G ++++G N+ G LG + S+ +P + +V ++AG H+ ALTDDG V+
Sbjct: 74 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 133
Query: 255 GWG--RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
WG R +G +G + K S MVP +V L +V+V+ G H V LT DG +++ G
Sbjct: 134 LWGSFRDNNGVIGLLEPMKKS-MVPVQVQLDV--PVVKVASGNDHLVMLTADGDLYTLGC 190
Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
G+ G+LG VP + A R G++R + K V R + V +Q
Sbjct: 191 GEQGQLG-----------RVP-ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 235
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 186/413 (45%), Gaps = 85/413 (20%)
Query: 7 IIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----- 60
++ G G+ GQLG+G N ER+ +V P V AG +++ + G+
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 61 -------------TENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG 107
+E +P +V K+VQ + G H A+ D GR + WG
Sbjct: 76 DEGALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWG-------- 125
Query: 108 EEPERKDDTGRI-----LRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPW 162
+D+ G I +++ +V P + + V +VA+G H V+LT +G ++T G
Sbjct: 126 ---SFRDNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLG--- 178
Query: 163 PPGDIKQI-SVPVRV------QGLEQV---KLIAV----------------GAFHNLALQ 196
G+ Q+ VP QGLE++ K + + GA+ A+
Sbjct: 179 -CGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 237
Query: 197 EDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL--VDIAAGGWHSTALTDDGEVY 254
+G ++ +G + Y QLGT T+ P + T V + G H+ + +G+ Y
Sbjct: 238 HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAY 297
Query: 255 GWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314
GR E+GRLG G+ + K +P ++ L + V+CG + A+T+DG +F++G G
Sbjct: 298 SLGRAEYGRLGLGEGAE-EKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGT 354
Query: 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
+ +LG G+ P+E+ G ++ R + V+ GG+HT+ +V+
Sbjct: 355 NYQLGTGQDEDAWSPVEM---------MGKQLENRVVLS-VSSGGQHTVLLVK 397
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 143/341 (41%), Gaps = 42/341 (12%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT- 59
++ + + ++G ++G LG + E + K KV V AG ++ A+ DDG+
Sbjct: 63 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 122
Query: 60 ------------------KTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGN 101
K +P QV + +V+ A G H + + G Y G
Sbjct: 123 LWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCG 180
Query: 102 EYGQCGEEPERKDDTG------RILRRDIVIPQRCAPKLIVR--QVAAGGTHSVVLTREG 153
E GQ G PE + G R+L V+ + + VR G + ++ EG
Sbjct: 181 EQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG 240
Query: 154 HVWTWG-----QPWPPGDIKQISVPVRVQGLEQVKL----IAVGAFHNLALQEDGALWAW 204
HV+ +G Q PG + +P + + + G H + + +G ++
Sbjct: 241 HVYGFGLSNYHQLGTPG-TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 299
Query: 205 GNNEYGQLGTGD-TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR 263
G EYG+LG G+ + +S P + L ++ +A G A+T DG V+ WG G + +
Sbjct: 300 GRAEYGRLGLGEGAEEKSIPTLISRLPAVS--SVACGASVGYAVTKDGRVFAWGMGTNYQ 357
Query: 264 LGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRD 304
LG G ++ + V L ++ VS GG H+V L +D
Sbjct: 358 LGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 398
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 144 THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV---------GAFHNLA 194
+H T G V T GQ GD+ Q+ + V ++ L+++ G H +
Sbjct: 7 SHRSHSTEPGLVLTLGQ----GDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVC 62
Query: 195 LQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254
L + G ++++G N+ G LG + S+ +P + +V ++AG H+ ALTDDG V+
Sbjct: 63 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 122
Query: 255 GWG--RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312
WG R +G +G + K S MVP +V L +V+V+ G H V LT DG +++ G
Sbjct: 123 LWGSFRDNNGVIGLLEPMKKS-MVPVQVQLDV--PVVKVASGNDHLVMLTADGDLYTLGC 179
Query: 313 GDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369
G+ G+LG VP + A R G++R + K V R + V +Q
Sbjct: 180 GEQGQLG-----------RVP-ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 224
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 162/395 (41%), Gaps = 64/395 (16%)
Query: 23 NEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNAL---SNTKIVQA 79
N + ++ + +++P + GS L + K K P ++N KI+
Sbjct: 14 NAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRP-RLNPFLPRDEAKIISF 72
Query: 80 AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD-----------------TGRILRR 122
A+GG H LA+D++ ++WG N+ G G + + +
Sbjct: 73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELEST 132
Query: 123 DIVIPQRCAPKLI----VRQVAAGGTHSVVLTREGHVWTWGQP--------WPPGDIKQI 170
IP+ P L V Q+AA S L G V+ WG + IK
Sbjct: 133 PAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQ 192
Query: 171 SVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQ 227
P +V + ++ A G H L L E+G ++AWGN + QLG + R + + +
Sbjct: 193 KTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252
Query: 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--PQKVNLLAG 285
+ IA+G H ALT D ++ WG + G+ G ++ + +V P+++ L
Sbjct: 253 PFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDN 312
Query: 286 EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG--------YGRKVTTGQPMEVPI--- 334
I ++ G HS+ L++DG ++S GR D +G Y K G+ VP+
Sbjct: 313 VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK 372
Query: 335 --NIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVE 367
N+P K VA G H++A+ +
Sbjct: 373 LNNVPK-------------FKSVAAGSHHSVAVAQ 394
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 32/267 (11%)
Query: 58 KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117
K K + P +V S IVQ A G H L +D++G +AWG + Q G + +
Sbjct: 188 KIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMER---- 243
Query: 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQ--- 169
R + P+ + V+ +A+G H LT++ + +W GQ D++
Sbjct: 244 --FRLKTLDPRPFGLRH-VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300
Query: 170 ISVPVRVQGLEQVKL--IAVGAFHNLALQEDGALWAWGNNEYGQLGT-GDTQP------- 219
++ P R+ + V + IA G H+L L +DG L++ G + ++G D P
Sbjct: 301 VTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDV 360
Query: 220 ----RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275
R+ P+P + + +AAG HS A+ +G Y WG GE +G G + ++
Sbjct: 361 HGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTE- 419
Query: 276 VPQKVNLLAGED--IVQVSCGGTHSVA 300
VP ++ A +D I+ V CGG SV+
Sbjct: 420 VPTRIKNTATQDHNIILVGCGGQFSVS 446
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 132/320 (41%), Gaps = 52/320 (16%)
Query: 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE-RKDDTGRILRRDIVIPQRCAPK 133
K+VQ A A+ G YAWG +C E D +I + +P K
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGT---FRCNEGILGFYQDKIKIQKTPWKVP--TFSK 203
Query: 134 LIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPV-----------RVQGLEQV 182
+ Q+A G H + L EG V+ WG G Q+ V R GL V
Sbjct: 204 YNIVQLAPGKDHILFLDEEGMVFAWGN----GQQNQLGRKVMERFRLKTLDPRPFGLRHV 259
Query: 183 KLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGD--------TQPRSQPIPVQGLSGLTL 234
K IA G H AL +D L +WG N++GQ G + T+P+ +P + +
Sbjct: 260 KYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP----DNVVI 315
Query: 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLG----------FGDNDKSSKMVPQKVNLLA 284
IAAG HS L+ DG++Y GR + +G + D ++ VP L
Sbjct: 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375
Query: 285 GEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGD 344
V+ G HSVA+ ++G +S+G G+ +G G P E +P
Sbjct: 376 VPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLG-------PFEDDTEVPTRIKNTA 428
Query: 345 GVDRRWIAKLVACGGRHTLA 364
D I LV CGG+ +++
Sbjct: 429 TQDHNII--LVGCGGQFSVS 446
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 45/338 (13%)
Query: 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
+ + I ++G ++G LG +E+ P K + AG +S + +DG+
Sbjct: 90 LTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVF 149
Query: 59 --------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104
T N + ++ + T A G H + + G+ + G E G
Sbjct: 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQG 209
Query: 105 QCGEEPERK-DDTGRILRRDIVIPQRCAPKLIVRQV----AAGGTHSVVLTREGH---VW 156
Q G ER GR +RD++ P +LI+ + A T+ RE +W
Sbjct: 210 QLGRLSERSISGEGRRGKRDLLRPT----QLIITRAKPFEAIWATNYCTFMRESQTQVIW 265
Query: 157 TWGQPWPPGDIKQIS----------VPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGN 206
G + KQ++ P++ + L+ ++ IA G H + L D G
Sbjct: 266 ATGL----NNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGR 320
Query: 207 NEYGQLGTGDTQPR-SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLG 265
EYG+LG GD + +P V+ L+ +V + G S A+T DG++Y WG G + +LG
Sbjct: 321 PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG 379
Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR 303
GD D + + G+ ++ S GG H++ L +
Sbjct: 380 VGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVK 417
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 199 GALWAWGNNEYGQLGTG-DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257
G + GN + GQLG G D R + PV G+ VDI+AGG H+ LT G++Y +G
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 258 RGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG--RGDH 315
+ G LG ++ S+ P ++ L G+ + +S G +HS L DG +F++G R H
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLID-LPGKALC-ISAGDSHSACLLEDGRVFAWGSFRDSH 158
Query: 316 GRLGY---GRKVTTGQPME 331
G +G G K T ME
Sbjct: 159 GNMGLTIDGNKRTPIDLME 177
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 165/407 (40%), Gaps = 68/407 (16%)
Query: 6 SIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAI----------C 54
+++ G+G+ GQLG+G + ER+ + V + P V + AG ++L + C
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGI-PDAV-DISAGGMHNLVLTKSGDIYSFGC 101
Query: 55 DD--------GKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYG 104
+D + +E+ P ++ + A CL D GR +AWG + +G
Sbjct: 102 NDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLED--GRVFAWGSFRDSHG 159
Query: 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWG--QPW 162
G + T P + +A+G H V+LT G V+T G +
Sbjct: 160 NMGLTIDGNKRT----------PIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQG 209
Query: 163 PPGDIKQISV-------------PVRVQGLEQVKLIAVGAFHNLALQEDG---ALWAWGN 206
G + + S+ P ++ A+ A + + +WA G
Sbjct: 210 QLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGL 269
Query: 207 NEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRGEHGRLG 265
N + QL P++ + L + AGG H T LT D + GR E+GRLG
Sbjct: 270 NNFKQLAHETKGKEFALTPIK--TELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLG 327
Query: 266 FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT 325
GD K P V L E IV V CG S A+T DG ++S+G G + +LG G
Sbjct: 328 LGDV-KDVVEKPTIVKKLT-EKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG---- 381
Query: 326 TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEE 372
G PI + + G + L + GG+H + +V+ ++
Sbjct: 382 DGDDELEPIVVVSKNTQGKHM------LLASGGGQHAIFLVKADKQD 422
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 121/278 (43%), Gaps = 55/278 (19%)
Query: 3 STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT- 61
+ TS++AWG GNN+ E V A V ++ G + LA+ GK
Sbjct: 2 AATSVVAWG---------GNNDWGE--ATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGW 49
Query: 62 -ENIPSQVN--ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118
N+ Q+ A + + + A G +H LA+ D G AWGGNE GQ E +
Sbjct: 50 GANLNGQLTMPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTTVPAEARSGVDA 108
Query: 119 I---------LRRDIVIP-------QRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWGQ 160
I L+ VI Q P V A GG ++ + + G V WG
Sbjct: 109 IAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGD 168
Query: 161 PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
+ Q +VP Q V +A G FH+LAL+ DG + AWG+N Y Q
Sbjct: 169 NY----FGQTTVPAEAQ--SGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQ--------- 212
Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
+P + LSG++ IA+G W+S AL +G+V WG
Sbjct: 213 -TTVPTEALSGVSA--IASGEWYSLAL-KNGKVIAWGS 246
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 55/205 (26%)
Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
V +A G H + L + G V WG Q+++P Q V IA G +H+LAL
Sbjct: 28 VDAIAGGYFHGLAL-KGGKVLGWGANLN----GQLTMPAATQ--SGVDAIAAGNYHSLAL 80
Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
+ DG + AWG NE GQ +P + SG+ IAAG W S AL DG+V
Sbjct: 81 K-DGEVIAWGGNEDGQ----------TTVPAEARSGVDA--IAAGAWASYAL-KDGKVIA 126
Query: 256 WGRGEHGR-----------------------------LGFGDNDKSSKMVPQKVNLLAGE 286
WG G+ + +GDN VP + A
Sbjct: 127 WGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAE----AQS 182
Query: 287 DIVQVSCGGTHSVALTRDGHIFSFG 311
+ V+ G HS+AL +DG + ++G
Sbjct: 183 GVDDVAGGIFHSLAL-KDGKVIAWG 206
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 203 AWG-NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
AWG NN++G+ +P + SG VD AGG+ G+V GWG +
Sbjct: 8 AWGGNNDWGE----------ATVPAEAQSG---VDAIAGGYFHGLALKGGKVLGWGANLN 54
Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
G+L +P + ++ G HS+AL +DG + ++G + G+
Sbjct: 55 GQL----------TMPAATQ----SGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQ 95
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 120/276 (43%), Gaps = 55/276 (19%)
Query: 5 TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT--E 62
TS++AWG GNN+ E V A V ++ G + LA+ GK
Sbjct: 2 TSVVAWG---------GNNDWGE--ATVPAEAQSGVDAIAGGYFHGLAL-KGGKVLGWGA 49
Query: 63 NIPSQVN--ALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI- 119
N+ Q+ A + + + A G +H LA+ D G AWGGNE GQ E + I
Sbjct: 50 NLNGQLTMPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTTVPAEARSGVDAIA 108
Query: 120 --------LRRDIVIP-------QRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWGQPW 162
L+ VI Q P V A GG ++ + + G V WG +
Sbjct: 109 AGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNY 168
Query: 163 PPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222
Q +VP Q V +A G FH+LAL+ DG + AWG+N Y Q
Sbjct: 169 ----FGQTTVPAEAQ--SGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQ----------T 211
Query: 223 PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258
+P + LSG++ IA+G W+S AL +G+V WG
Sbjct: 212 TVPTEALSGVSA--IASGEWYSLAL-KNGKVIAWGS 244
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 55/205 (26%)
Query: 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLAL 195
V +A G H + L + G V WG Q+++P Q V IA G +H+LAL
Sbjct: 26 VDAIAGGYFHGLAL-KGGKVLGWGANLN----GQLTMPAATQ--SGVDAIAAGNYHSLAL 78
Query: 196 QEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYG 255
+ DG + AWG NE GQ +P + SG+ IAAG W S AL DG+V
Sbjct: 79 K-DGEVIAWGGNEDGQ----------TTVPAEARSGVDA--IAAGAWASYAL-KDGKVIA 124
Query: 256 WGRGEHGR-----------------------------LGFGDNDKSSKMVPQKVNLLAGE 286
WG G+ + +GDN VP + A
Sbjct: 125 WGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAE----AQS 180
Query: 287 DIVQVSCGGTHSVALTRDGHIFSFG 311
+ V+ G HS+AL +DG + ++G
Sbjct: 181 GVDDVAGGIFHSLAL-KDGKVIAWG 204
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 203 AWG-NNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEH 261
AWG NN++G+ +P + SG VD AGG+ G+V GWG +
Sbjct: 6 AWGGNNDWGE----------ATVPAEAQSG---VDAIAGGYFHGLALKGGKVLGWGANLN 52
Query: 262 GRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317
G+L +P + ++ G HS+AL +DG + ++G + G+
Sbjct: 53 GQL----------TMPAATQ----SGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQ 93
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 77 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 131
Query: 201 LWA 203
A
Sbjct: 132 KMA 134
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 77 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 131
Query: 201 LWA 203
A
Sbjct: 132 KMA 134
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 79 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 133
Query: 201 LWA 203
A
Sbjct: 134 KMA 136
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 79 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 133
Query: 201 LWA 203
A
Sbjct: 134 KMA 136
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 83 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 137
Query: 201 LWA 203
A
Sbjct: 138 KMA 140
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 84 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 138
Query: 201 LWA 203
A
Sbjct: 139 KMA 141
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 66 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 120
Query: 201 LWA 203
A
Sbjct: 121 KMA 123
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 85 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 139
Query: 201 LWA 203
A
Sbjct: 140 KMA 142
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 66 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 120
Query: 201 LWA 203
A
Sbjct: 121 KMA 123
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 70 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 124
Query: 201 LWA 203
A
Sbjct: 125 KMA 127
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 82 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 136
Query: 201 LWA 203
A
Sbjct: 137 KMA 139
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 68 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 122
Query: 201 LWA 203
A
Sbjct: 123 KMA 125
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 135
Query: 201 LWA 203
A
Sbjct: 136 KMA 138
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 83 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 137
Query: 201 LWA 203
A
Sbjct: 138 KMA 140
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQEGA 132
Query: 201 LWA 203
A
Sbjct: 133 KMA 135
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 141 AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGA 200
AG H++ REG + + P +K + PV + V A+ HNL L ++GA
Sbjct: 23 AGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPV-----DSVLFYAITTLHNLLLHQEGA 77
>pdb|2I6E|A Chain A, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|B Chain B, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|C Chain C, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|D Chain D, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|E Chain E, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|F Chain F, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|G Chain G, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
pdb|2I6E|H Chain H, Crystal Structure Of Protein Dr0370 From Deinococcus
Radiodurans, Pfam Duf178
Length = 301
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 11 GSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD 55
+G DG L IG++ REW VV L P + + + + + + D
Sbjct: 145 AAGYDGVLRIGDDALREWYGVVGPLTPERTXTSLPHTGRGITVTD 189
>pdb|1TLW|A Chain A, Tsx Structure Complexed With Thymidine
pdb|1TLW|B Chain B, Tsx Structure Complexed With Thymidine
pdb|1TLY|A Chain A, Tsx Structure
pdb|1TLY|B Chain B, Tsx Structure
pdb|1TLZ|A Chain A, Tsx Structure Complexed With Uridine
pdb|1TLZ|B Chain B, Tsx Structure Complexed With Uridine
Length = 278
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 304 DGHIFSFGRGDHGR-----LGYGRKVTTGQPMEVPINIPAP---RNAGDGVDRRW 350
+ +I+ GR GR +G G + TG PM + +N+ A +N G + W
Sbjct: 106 NNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMSLSMNVYAKYQWQNYGAANENEW 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,825,928
Number of Sequences: 62578
Number of extensions: 583551
Number of successful extensions: 1491
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 89
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)