Query 038610
Match_columns 374
No_of_seqs 290 out of 2104
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:47:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 9.5E-48 2.1E-52 340.5 28.2 347 3-366 66-463 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.9E-43 4E-48 313.3 25.9 309 46-369 76-411 (476)
3 KOG1427 Uncharacterized conser 100.0 4.5E-42 9.8E-47 285.9 16.4 305 1-371 73-402 (443)
4 KOG1427 Uncharacterized conser 100.0 3.9E-36 8.5E-41 250.5 16.6 275 63-367 45-345 (443)
5 KOG0783 Uncharacterized conser 99.9 1E-26 2.2E-31 217.0 13.2 262 2-314 139-417 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 9.4E-23 2E-27 198.1 22.0 292 39-366 480-893 (3738)
7 KOG0783 Uncharacterized conser 99.9 7E-24 1.5E-28 198.3 10.9 208 147-370 136-355 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 1.4E-19 3.1E-24 176.4 21.5 234 67-301 606-892 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 1.4E-12 3.1E-17 83.9 5.8 50 4-53 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 1.3E-12 2.8E-17 84.1 4.8 50 250-301 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.3 4.2E-12 9.1E-17 70.9 4.2 30 76-105 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.3 7.1E-12 1.5E-16 70.0 4.3 30 288-317 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.1E-12 2.3E-17 125.0 -5.7 178 180-371 14-199 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 3.3E-12 7.2E-17 121.7 -8.6 129 227-369 9-144 (850)
15 KOG3669 Uncharacterized conser 95.6 1.4 3.1E-05 42.0 17.0 105 141-256 190-299 (705)
16 KOG3669 Uncharacterized conser 95.2 1.9 4.2E-05 41.2 16.5 105 81-204 190-299 (705)
17 PF11725 AvrE: Pathogenicity f 92.1 1 2.2E-05 48.4 9.7 195 78-311 562-770 (1774)
18 KOG0943 Predicted ubiquitin-pr 89.9 0.031 6.8E-07 57.0 -3.2 129 73-209 373-507 (3015)
19 KOG1274 WD40 repeat protein [G 89.8 11 0.00023 38.4 13.7 149 81-258 13-167 (933)
20 PF11725 AvrE: Pathogenicity f 89.2 1.5 3.3E-05 47.2 8.0 113 67-199 696-815 (1774)
21 PF07569 Hira: TUP1-like enhan 89.1 2.4 5.2E-05 36.1 8.0 29 232-260 13-41 (219)
22 KOG0315 G-protein beta subunit 88.8 14 0.00031 31.7 18.4 109 134-260 84-198 (311)
23 PHA03098 kelch-like protein; P 87.5 13 0.00028 36.4 13.2 16 190-206 382-397 (534)
24 KOG0943 Predicted ubiquitin-pr 86.7 0.047 1E-06 55.8 -4.3 133 180-317 374-509 (3015)
25 KOG1274 WD40 repeat protein [G 86.2 24 0.00051 36.0 13.6 36 171-206 47-85 (933)
26 PF07569 Hira: TUP1-like enhan 85.8 4.5 9.8E-05 34.5 7.8 29 133-161 12-40 (219)
27 TIGR03300 assembly_YfgL outer 84.4 27 0.00058 32.4 13.1 57 241-310 320-376 (377)
28 PHA02713 hypothetical protein; 83.9 13 0.00028 36.8 11.0 15 147-161 346-360 (557)
29 KOG4441 Proteins containing BT 82.4 19 0.0004 35.7 11.4 23 290-312 508-530 (571)
30 KOG0646 WD40 repeat protein [G 81.6 47 0.001 31.2 17.0 156 75-257 83-245 (476)
31 smart00706 TECPR Beta propelle 80.1 3.4 7.4E-05 23.4 3.4 24 75-98 9-33 (35)
32 smart00706 TECPR Beta propelle 80.1 5 0.00011 22.7 4.1 25 232-256 8-33 (35)
33 COG4257 Vgb Streptogramin lyas 80.0 34 0.00074 30.1 10.6 227 2-264 70-302 (353)
34 KOG0291 WD40-repeat-containing 79.9 71 0.0015 32.2 23.1 119 76-209 300-424 (893)
35 KOG1900 Nuclear pore complex, 77.9 1.1E+02 0.0023 33.1 16.1 209 87-312 93-339 (1311)
36 KOG0315 G-protein beta subunit 75.9 52 0.0011 28.5 18.6 69 74-161 125-197 (311)
37 TIGR01063 gyrA DNA gyrase, A s 73.8 1.2E+02 0.0026 31.6 22.9 226 73-318 534-774 (800)
38 PRK05560 DNA gyrase subunit A; 69.9 1.5E+02 0.0032 31.0 22.6 253 46-319 497-778 (805)
39 PRK14131 N-acetylneuraminic ac 68.3 1E+02 0.0022 28.6 12.9 17 145-161 132-148 (376)
40 PRK13979 DNA topoisomerase IV 67.5 1.8E+02 0.0038 31.0 21.6 134 72-214 550-696 (957)
41 COG4257 Vgb Streptogramin lyas 66.7 83 0.0018 27.8 9.7 133 82-256 62-205 (353)
42 PF04762 IKI3: IKI3 family; I 64.2 1.7E+02 0.0037 31.1 13.5 30 132-161 425-456 (928)
43 PF12341 DUF3639: Protein of u 62.8 22 0.00048 19.0 3.9 24 232-255 2-25 (27)
44 TIGR03300 assembly_YfgL outer 61.8 1.3E+02 0.0029 27.7 11.9 56 190-256 321-376 (377)
45 PF06739 SBBP: Beta-propeller 59.1 13 0.00027 21.7 2.6 19 190-208 15-33 (38)
46 PF04841 Vps16_N: Vps16, N-ter 58.8 1.6E+02 0.0036 27.8 21.0 71 176-258 213-286 (410)
47 TIGR01063 gyrA DNA gyrase, A s 58.6 2.4E+02 0.0051 29.5 17.9 159 141-311 544-716 (800)
48 KOG0649 WD40 repeat protein [G 57.5 1.3E+02 0.0028 26.1 11.6 46 180-226 63-109 (325)
49 PF07250 Glyoxal_oxid_N: Glyox 57.1 1.3E+02 0.0028 26.1 11.6 110 149-260 74-190 (243)
50 KOG1240 Protein kinase contain 56.4 3E+02 0.0064 29.9 14.6 161 133-312 1048-1224(1431)
51 PHA03098 kelch-like protein; P 55.1 1.2E+02 0.0026 29.6 10.4 17 84-101 335-351 (534)
52 KOG1408 WD40 repeat protein [F 53.8 2.6E+02 0.0055 28.4 11.8 97 79-205 138-247 (1080)
53 TIGR01062 parC_Gneg DNA topois 53.2 2.7E+02 0.0059 28.6 18.5 158 45-213 492-660 (735)
54 KOG0293 WD40 repeat-containing 52.9 2E+02 0.0044 27.0 12.4 71 130-207 392-470 (519)
55 KOG2106 Uncharacterized conser 52.2 2.3E+02 0.0049 27.4 15.0 55 135-203 248-303 (626)
56 PLN02153 epithiospecifier prot 52.1 1.9E+02 0.0041 26.4 17.5 18 189-207 129-146 (341)
57 KOG1408 WD40 repeat protein [F 51.2 2.8E+02 0.0061 28.2 12.6 62 39-100 167-248 (1080)
58 TIGR03548 mutarot_permut cycli 50.9 1.9E+02 0.0041 26.1 12.4 18 190-208 116-133 (323)
59 PRK05560 DNA gyrase subunit A; 49.3 3.3E+02 0.0072 28.4 20.4 159 140-310 545-718 (805)
60 KOG0275 Conserved WD40 repeat- 47.0 1.5E+02 0.0033 26.6 8.3 17 241-257 449-465 (508)
61 KOG0293 WD40 repeat-containing 46.6 2.5E+02 0.0055 26.3 14.5 70 232-314 396-471 (519)
62 PHA02790 Kelch-like protein; P 45.8 25 0.00054 34.0 3.8 15 193-207 357-371 (480)
63 PHA02713 hypothetical protein; 45.4 75 0.0016 31.4 7.1 20 82-101 341-360 (557)
64 KOG1900 Nuclear pore complex, 44.7 1.3E+02 0.0028 32.5 8.7 100 193-315 93-200 (1311)
65 PF04841 Vps16_N: Vps16, N-ter 44.1 2.8E+02 0.0061 26.2 20.4 194 74-313 81-287 (410)
66 PF13418 Kelch_4: Galactose ox 43.6 24 0.00052 21.4 2.3 18 295-312 3-20 (49)
67 PHA02790 Kelch-like protein; P 42.7 71 0.0015 30.9 6.4 13 195-207 315-327 (480)
68 KOG4441 Proteins containing BT 42.3 81 0.0018 31.3 6.8 106 145-258 420-530 (571)
69 KOG2106 Uncharacterized conser 40.4 3.5E+02 0.0076 26.2 19.9 129 39-197 213-347 (626)
70 PF03785 Peptidase_C25_C: Pept 39.3 48 0.001 23.1 3.3 43 275-319 7-50 (81)
71 KOG0289 mRNA splicing factor [ 38.5 3.5E+02 0.0076 25.6 12.4 63 144-206 350-418 (506)
72 PF03785 Peptidase_C25_C: Pept 37.2 86 0.0019 21.8 4.2 41 172-212 8-49 (81)
73 PLN03215 ascorbic acid mannose 36.5 1.4E+02 0.0031 27.7 7.0 63 75-160 161-226 (373)
74 PLN03215 ascorbic acid mannose 35.5 1.6E+02 0.0036 27.3 7.2 62 233-311 161-225 (373)
75 KOG1275 PAB-dependent poly(A) 34.6 5.7E+02 0.012 26.9 12.9 161 75-267 171-350 (1118)
76 PF01436 NHL: NHL repeat; Int 33.5 79 0.0017 16.7 3.1 17 297-313 5-21 (28)
77 KOG0278 Serine/threonine kinas 33.0 3.4E+02 0.0073 23.8 11.5 67 33-100 95-172 (334)
78 cd00200 WD40 WD40 domain, foun 31.0 3.1E+02 0.0068 22.8 23.4 146 75-259 11-165 (289)
79 KOG0649 WD40 repeat protein [G 30.4 3.7E+02 0.008 23.4 8.5 34 232-266 63-97 (325)
80 PLN02153 epithiospecifier prot 30.0 4.2E+02 0.0092 24.0 18.0 17 144-161 130-146 (341)
81 PF08450 SGL: SMP-30/Gluconola 29.6 3.5E+02 0.0077 23.0 13.8 16 242-257 186-201 (246)
82 PF14517 Tachylectin: Tachylec 29.0 2.9E+02 0.0063 23.7 7.1 62 143-204 91-155 (229)
83 PF14517 Tachylectin: Tachylec 28.9 3.8E+02 0.0081 23.1 8.2 23 136-158 132-155 (229)
84 PF00167 FGF: Fibroblast growt 28.3 2.6E+02 0.0056 21.0 8.8 65 136-204 2-66 (122)
85 PF02239 Cytochrom_D1: Cytochr 27.7 4.7E+02 0.01 24.3 9.0 153 37-209 26-193 (369)
86 KOG2048 WD40 repeat protein [G 27.6 6.4E+02 0.014 25.3 17.6 69 241-324 487-558 (691)
87 PF04762 IKI3: IKI3 family; I 26.5 8.2E+02 0.018 26.2 21.3 47 243-313 593-639 (928)
88 PRK13979 DNA topoisomerase IV 26.4 8.3E+02 0.018 26.2 20.7 163 82-266 515-696 (957)
89 PF11399 DUF3192: Protein of u 26.0 54 0.0012 24.0 1.9 24 240-263 78-101 (102)
90 KOG1230 Protein containing rep 25.9 5.8E+02 0.012 24.2 8.9 18 295-312 233-250 (521)
91 KOG0307 Vesicle coat complex C 25.2 1.9E+02 0.0042 30.6 6.2 47 273-319 241-290 (1049)
92 PRK11138 outer membrane biogen 24.7 5.7E+02 0.012 23.7 23.2 17 295-311 376-392 (394)
93 PF13570 PQQ_3: PQQ-like domai 24.5 1E+02 0.0022 17.6 2.7 20 80-99 18-37 (40)
94 KOG0289 mRNA splicing factor [ 24.5 6.2E+02 0.013 24.1 16.3 67 190-258 350-418 (506)
95 KOG2280 Vacuolar assembly/sort 24.3 8E+02 0.017 25.3 13.7 200 75-313 85-287 (829)
96 PF13854 Kelch_5: Kelch motif 23.6 87 0.0019 18.3 2.3 19 295-314 6-24 (42)
97 KOG1034 Transcriptional repres 22.5 2.7E+02 0.0058 25.3 5.8 59 244-312 322-382 (385)
98 cd00200 WD40 WD40 domain, foun 21.9 4.6E+02 0.01 21.7 28.5 146 75-259 95-249 (289)
99 KOG2444 WD40 repeat protein [G 21.5 2E+02 0.0044 24.6 4.7 71 237-319 66-138 (238)
100 KOG2444 WD40 repeat protein [G 21.1 2.2E+02 0.0047 24.4 4.8 65 78-160 65-131 (238)
101 PRK02529 petN cytochrome b6-f 20.7 1E+02 0.0022 17.1 1.9 14 6-19 19-32 (33)
102 PF13938 DUF4213: Domain of un 20.2 1.8E+02 0.004 20.4 3.8 21 231-251 11-31 (87)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=9.5e-48 Score=340.52 Aligned_cols=347 Identities=31% Similarity=0.536 Sum_probs=269.8
Q ss_pred CCCcEEEeeCCCCCCcCCCCCcce-eeeEEeecc--CCCceEEEecCCcceEEEecCCC---------------e-----
Q 038610 3 STTSIIAWGSGEDGQLGIGNNEER-EWVCVVKAL--EPYKVRSVVAGSRNSLAICDDGK---------------T----- 59 (374)
Q Consensus 3 ~~g~v~~wG~n~~GqLG~~~~~~~-~~p~~v~~~--~~~~i~~v~~g~~~~~~l~~~g~---------------~----- 59 (374)
.-..||+||+|..+|||++..... ..|+..++. ....|++++||..|+++|+.||. .
T Consensus 66 ~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~ 145 (476)
T COG5184 66 KMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDIC 145 (476)
T ss_pred heeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccc
Confidence 346799999999999999987655 889888887 56799999999999999999996 1
Q ss_pred ------------eeeecCeeecc----cCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecc
Q 038610 60 ------------KTENIPSQVNA----LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD 123 (374)
Q Consensus 60 ------------~~~~~p~~~~~----~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~ 123 (374)
.-...|..++. .+..+|++++||++++++|+++|+||+||....+.++.+......... .
T Consensus 146 ~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~----~ 221 (476)
T COG5184 146 DQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS----I 221 (476)
T ss_pred cccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccce----e
Confidence 12456777766 234579999999999999999999999999998888888554433222 2
Q ss_pred cccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC---CCeeEEEECCceEEEEe
Q 038610 124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQ 196 (374)
Q Consensus 124 ~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~---~~i~~i~~g~~~~~~l~ 196 (374)
...|..++ ...|+++++|.+|.++|+++|++|.||++ ++....+....+..+... ..|+.|+||.+|+++|+
T Consensus 222 ~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~ 300 (476)
T COG5184 222 QFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALD 300 (476)
T ss_pred eeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEc
Confidence 34444443 67899999999999999999999999998 333333444444444333 55788999999999999
Q ss_pred cCCcEEEEecCCCCCCCCCCCC----CCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCC
Q 038610 197 EDGALWAWGNNEYGQLGTGDTQ----PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272 (374)
Q Consensus 197 ~~g~v~~~G~n~~gqlG~~~~~----~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~ 272 (374)
++|+||+||.|-+||||.++.. ....|.....+....|..|++|..|+++|..+|.||+||++..+|||.......
T Consensus 301 ~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~ 380 (476)
T COG5184 301 EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITI 380 (476)
T ss_pred CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCccccee
Confidence 9999999999999999998321 223344444555566999999999999999999999999999999999885455
Q ss_pred ccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCC-CCceeeeeecCCCCCCCCCCCccee
Q 038610 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIPAPRNAGDGVDRRWI 351 (374)
Q Consensus 273 ~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~-~~p~~v~~~~~~~~~~~~~~~~~~~ 351 (374)
....|+++... .++.+++||..|.++.+.+|+||+||+|++||||.|+.... ..|+.++.++.. ...
T Consensus 381 ~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~----------~~~ 448 (476)
T COG5184 381 DVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLS----------GHN 448 (476)
T ss_pred ecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccC----------CCc
Confidence 55566665543 67999999999999999999999999999999999987553 444444322111 122
Q ss_pred EEEEeeCCCceEEEE
Q 038610 352 AKLVACGGRHTLAIV 366 (374)
Q Consensus 352 i~~v~~G~~ht~~l~ 366 (374)
++..-||.+.+++.-
T Consensus 449 ~i~~g~~~~~~v~~~ 463 (476)
T COG5184 449 IILAGYGNQFSVIEE 463 (476)
T ss_pred eEEeccCcceEEEec
Confidence 666777766666543
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.9e-43 Score=313.28 Aligned_cols=309 Identities=30% Similarity=0.498 Sum_probs=236.0
Q ss_pred CCcceEEEecCCCeeeeecCeeeccc--CCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCC------c
Q 038610 46 GSRNSLAICDDGKTKTENIPSQVNAL--SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDT------G 117 (374)
Q Consensus 46 g~~~~~~l~~~g~~~~~~~p~~~~~~--~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~------~ 117 (374)
|...-+.|-.|+.. ...|+..+.. +...|++++||..|+++|++||+||+||.|..|+||.....+... .
T Consensus 76 n~~~eLGlg~de~~--~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~ 153 (476)
T COG5184 76 NGMNELGLGNDETK--VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIID 153 (476)
T ss_pred CcceeeccCCchhc--ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccc
Confidence 44444555555444 6677776665 567899999999999999999999999999999999877200000 0
Q ss_pred ceeecccccccccCC------CCcEEEEEeCCCeEEEEecCCcEEEecCC----CCCC------CccCcccceEeeCCCC
Q 038610 118 RILRRDIVIPQRCAP------KLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPG------DIKQISVPVRVQGLEQ 181 (374)
Q Consensus 118 ~~~~~~~~~p~~~~~------~~~i~~i~~g~~~~~~lt~~g~v~~~G~~----~~~~------~~~~~~~p~~i~~~~~ 181 (374)
.........|..++. ..+++++.||.+++++++++|+||.||.. ...+ ......+|..++ ...
T Consensus 154 ~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~ 232 (476)
T COG5184 154 FDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKA 232 (476)
T ss_pred cchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chh
Confidence 011112445555554 55899999999999999999999999986 1111 112335565555 478
Q ss_pred eeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCC-CcEEEEEecCCeEEEEecCCCEEEEeCCC
Q 038610 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG-LTLVDIAAGGWHSTALTDDGEVYGWGRGE 260 (374)
Q Consensus 182 i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~-~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 260 (374)
|.++++|.+|.++|+++|+||.||+|.+||||....+....+..+..+.. ..|+.|+||.+|+++|+++|+||+||.|.
T Consensus 233 i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~ 312 (476)
T COG5184 233 IVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNI 312 (476)
T ss_pred eeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccch
Confidence 99999999999999999999999999999999998877766666654322 34788999999999999999999999999
Q ss_pred CCCCCCCCC--CCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCC
Q 038610 261 HGRLGFGDN--DKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPA 338 (374)
Q Consensus 261 ~gqlG~~~~--~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~ 338 (374)
+||||.+.. .......|+....+.+..|.+|++|..|+++|..+|.||+||++..+|||..+......+++. +++.
T Consensus 313 fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~--~ls~ 390 (476)
T COG5184 313 FGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPT--KLSV 390 (476)
T ss_pred hcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcc--cccc
Confidence 999999832 123445666666776677999999999999999999999999999999999885533222111 1110
Q ss_pred CCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 339 PRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 339 ~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
-.++.+|+||..|+++.+++.
T Consensus 391 ----------~~~~~~v~~gt~~~~~~t~~g 411 (476)
T COG5184 391 ----------AIKLEQVACGTHHNIARTDDG 411 (476)
T ss_pred ----------ccceEEEEecCccceeeccCC
Confidence 114899999999999998875
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=4.5e-42 Score=285.89 Aligned_cols=305 Identities=26% Similarity=0.423 Sum_probs=247.9
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCCeeeeecCeeecccCCCCeEEEe
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAA 80 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~~~~~~p~~~~~~~~~~i~~i~ 80 (374)
|+.+|+.|.||.|..||||+++..-+.. |+.++.++..+|++.+
T Consensus 73 i~megk~~~wGRNekGQLGhgD~k~~e~------------------------------------Ptvi~gL~~~~iv~AA 116 (443)
T KOG1427|consen 73 IDMEGKCYTWGRNEKGQLGHGDMKQRER------------------------------------PTVISGLSKHKIVKAA 116 (443)
T ss_pred EecccceeecccCccCccCccchhhccC------------------------------------CchhhhhhhhhHHHHh
Confidence 4678999999999999999997754544 4555556667899999
Q ss_pred ccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeeccccccccc-CCCCcEEEEEeCCCeEEEEecCCcEEEec
Q 038610 81 IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-APKLIVRQVAAGGTHSVVLTREGHVWTWG 159 (374)
Q Consensus 81 ~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~-~~~~~i~~i~~g~~~~~~lt~~g~v~~~G 159 (374)
||++|+++||++|.+|.||.|.+||||.+..... +..|..+ -....|..|+||.+|++.|+..+.+..+|
T Consensus 117 ~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~---------v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~g 187 (443)
T KOG1427|consen 117 AGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNE---------VESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAG 187 (443)
T ss_pred hccCcEEEEecCCcEEEecccccccccccccccc---------cccCCCccccCccceeeccccceEEEeecccceeecC
Confidence 9999999999999999999999999999987643 2222222 23778999999999999999999999998
Q ss_pred CC----CCCC--------------CccCcccceEeeCC--CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCC
Q 038610 160 QP----WPPG--------------DIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219 (374)
Q Consensus 160 ~~----~~~~--------------~~~~~~~p~~i~~~--~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~ 219 (374)
.. ++++ .++..+.|..|..+ ..|++++||.+|+++++++++||.||..-||.||+.+...
T Consensus 188 lp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKD 267 (443)
T KOG1427|consen 188 LPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKD 267 (443)
T ss_pred CccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchh
Confidence 65 1221 12334455555555 6799999999999999999999999999999999999999
Q ss_pred CccceeeccCC--CCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCe
Q 038610 220 RSQPIPVQGLS--GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297 (374)
Q Consensus 220 ~~~p~~~~~~~--~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~ 297 (374)
...|..+..+. +..-.++.||+..++++.+-|.||.||.+.. ..+..++|.++..+.+.++..+.|+..|
T Consensus 268 EmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~--------~ge~~mypkP~~dlsgwnl~~~~~~~~h 339 (443)
T KOG1427|consen 268 EMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN--------NGEDWMYPKPMMDLSGWNLRWMDSGSMH 339 (443)
T ss_pred hHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc--------CcccccCCCchhhcCCccCCCcCcccee
Confidence 99998887653 4456788999999999999999999998744 2677889999999999999999999998
Q ss_pred EEEEecCCCEEEEeCCCCCccCCCCC--CCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeeccc
Q 038610 298 SVALTRDGHIFSFGRGDHGRLGYGRK--VTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371 (374)
Q Consensus 298 ~~~lt~~g~vy~~G~n~~gqLG~g~~--~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~~~ 371 (374)
.++-. +..+.+||...+|.++-|.. .+...|.+++ ...+++|-+|+||..||++|+++.++
T Consensus 340 ~~v~a-d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~------------~l~~i~v~~VamGysHs~vivd~t~e 402 (443)
T KOG1427|consen 340 HFVGA-DSSCISWGHAQYGELLGGPNGQKSSAAPKKVD------------MLEGIHVMGVAMGYSHSMVIVDRTDE 402 (443)
T ss_pred eeecc-cccccccccccccccccCccccccccCccccc------------hhcceeccceeeccceEEEEEccccH
Confidence 87655 55899999998887766553 4445554442 33477899999999999999998765
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.9e-36 Score=250.50 Aligned_cols=275 Identities=27% Similarity=0.471 Sum_probs=217.1
Q ss_pred ecCeeecccCCCCeEEEecc--CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCC--CCcEEE
Q 038610 63 NIPSQVNALSNTKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQ 138 (374)
Q Consensus 63 ~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~--~~~i~~ 138 (374)
..|.++..+...+|..|+.| ..|+++|+-+|++|+||.|..||||+++.. ....|+.|+. ..+|++
T Consensus 45 ~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k----------~~e~Ptvi~gL~~~~iv~ 114 (443)
T KOG1427|consen 45 VSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMK----------QRERPTVISGLSKHKIVK 114 (443)
T ss_pred ccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchh----------hccCCchhhhhhhhhHHH
Confidence 44666667777788888866 679999999999999999999999999654 3345666644 778999
Q ss_pred EEeCCCeEEEEecCCcEEEecCC------CCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCC
Q 038610 139 VAAGGTHSVVLTREGHVWTWGQP------WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212 (374)
Q Consensus 139 i~~g~~~~~~lt~~g~v~~~G~~------~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gql 212 (374)
.+||++|+++||++|+||.||.| +++........|...--..+|+.|+||..+++.|+..+.+..+|...||||
T Consensus 115 AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygql 194 (443)
T KOG1427|consen 115 AAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQL 194 (443)
T ss_pred HhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCcccccc
Confidence 99999999999999999999999 222222222222222223789999999999999999999999999999999
Q ss_pred CCCCCCC--------------CccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccce
Q 038610 213 GTGDTQP--------------RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278 (374)
Q Consensus 213 G~~~~~~--------------~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~ 278 (374)
|++.... .+.|..+..+.+.+|++++||.+|+++++.+++||.||-.-||+||+.. ..+.+.|+
T Consensus 195 gh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaE--qKDEmvpR 272 (443)
T KOG1427|consen 195 GHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAE--QKDEMVPR 272 (443)
T ss_pred ccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEecccccccccccc--chhhHHHH
Confidence 9986532 2345556677788999999999999999999999999999999999988 78899999
Q ss_pred EeecCCC--CcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEe
Q 038610 279 KVNLLAG--EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVA 356 (374)
Q Consensus 279 ~v~~~~~--~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~ 356 (374)
+++++.- .--.++.||...++++.+-|.||.||.+... |+ +..+|.++ . ...+|.+..+.
T Consensus 273 lik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~----ge--~~mypkP~--~----------dlsgwnl~~~~ 334 (443)
T KOG1427|consen 273 LIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN----GE--DWMYPKPM--M----------DLSGWNLRWMD 334 (443)
T ss_pred HHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC----cc--cccCCCch--h----------hcCCccCCCcC
Confidence 9997753 2356899999999999999999999987421 11 11222222 1 23367789999
Q ss_pred eCCCceEEEEe
Q 038610 357 CGGRHTLAIVE 367 (374)
Q Consensus 357 ~G~~ht~~l~~ 367 (374)
||..|.++=.+
T Consensus 335 ~~~~h~~v~ad 345 (443)
T KOG1427|consen 335 SGSMHHFVGAD 345 (443)
T ss_pred ccceeeeeccc
Confidence 99999887544
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1e-26 Score=217.02 Aligned_cols=262 Identities=23% Similarity=0.402 Sum_probs=198.3
Q ss_pred CCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCCeeeeecCeeecccCCCCeEEEec
Q 038610 2 ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAI 81 (374)
Q Consensus 2 ~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~~~~~~p~~~~~~~~~~i~~i~~ 81 (374)
+.-..||.||.|.+.-||.+...+...|..|+.+.. ++.=+.+|+.
T Consensus 139 d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~----------------------------------Sg~~~~qV~l 184 (1267)
T KOG0783|consen 139 DLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKT----------------------------------SGQLFSQVQL 184 (1267)
T ss_pred CCccceeEecccccccccccCCCCCCChHHhHHHHh----------------------------------ccHHHHHHHH
Confidence 445689999999999999999999999999888652 2334678999
Q ss_pred cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCC--CCcEEEEEeCCCeEEEEecCCcEEEec
Q 038610 82 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWG 159 (374)
Q Consensus 82 G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~--~~~i~~i~~g~~~~~~lt~~g~v~~~G 159 (374)
+.+|+++|++.|+||+||...-|.||++.+. ..+.|.+++. ..++.+|++...|+++||+.|-||.||
T Consensus 185 ~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq----------~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~G 254 (1267)
T KOG0783|consen 185 SKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ----------YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWG 254 (1267)
T ss_pred hhceeeEecCCCcEEEeccCCCCccCcCccc----------ccccccccccccccceEEEEeecceeEEEeecceEEEee
Confidence 9999999999999999999999999999654 4567777765 789999999999999999999999999
Q ss_pred CCCCCC-----CccCcccceEe-----eCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCC-Cccceeecc
Q 038610 160 QPWPPG-----DIKQISVPVRV-----QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-RSQPIPVQG 228 (374)
Q Consensus 160 ~~~~~~-----~~~~~~~p~~i-----~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~-~~~p~~~~~ 228 (374)
.|..+. .......|.+| ...+.|+-|+||..|+++-+.. .||+||.|. ||||..++.. ...|..+..
T Consensus 255 lN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~ 332 (1267)
T KOG0783|consen 255 LNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG 332 (1267)
T ss_pred cCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcc
Confidence 992221 12233334444 4446899999999999999765 799999986 9999877643 345654433
Q ss_pred CCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecC----CCCcEEEEEccCCeEEEEecC
Q 038610 229 LSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL----AGEDIVQVSCGGTHSVALTRD 304 (374)
Q Consensus 229 ~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~----~~~~i~~i~~G~~~~~~lt~~ 304 (374)
. ...|+.|+|....++++++++.+|++-+-+.-.+.... ......+|..- .-..+++..+...-.+++|+.
T Consensus 333 ~-~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~----~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~ 407 (1267)
T KOG0783|consen 333 L-LSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNV----DFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTEL 407 (1267)
T ss_pred c-ccceEEEEecCccEEEEecCCcEEEEecccceecCcch----hccceeEEecCccchhhhhhhhcchhhhheeeeccC
Confidence 2 26799999999999999999999999864332222111 11111111110 013456777777888999999
Q ss_pred CCEEEEeCCC
Q 038610 305 GHIFSFGRGD 314 (374)
Q Consensus 305 g~vy~~G~n~ 314 (374)
|+||+|-.++
T Consensus 408 g~Vy~w~s~n 417 (1267)
T KOG0783|consen 408 GEVYEWDSKN 417 (1267)
T ss_pred CeEEEEecCC
Confidence 9999998653
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=9.4e-23 Score=198.14 Aligned_cols=292 Identities=22% Similarity=0.330 Sum_probs=196.7
Q ss_pred ceEEEecCCcceEEEecCCCeeeeecC------------eeecccCCCCeEEEeccCceeEEEeC--CCcEEEEeCCCCC
Q 038610 39 KVRSVVAGSRNSLAICDDGKTKTENIP------------SQVNALSNTKIVQAAIGGWHCLAVDD--QGRAYAWGGNEYG 104 (374)
Q Consensus 39 ~i~~v~~g~~~~~~l~~~g~~~~~~~p------------~~~~~~~~~~i~~i~~G~~~~~~lt~--~g~v~~wG~n~~g 104 (374)
+-..+-.+...+++-..+|+.+....- .++..+ .+|++|+.|-+...++.- +|-+++-+....
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t~~Gl~e~G~nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~- 556 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGTRFGLFETGNNWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDDKKR- 556 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCccEEeEEccCCceEEecCC--CceEEEEeccchhheeeccCcceEEeccCccc-
Confidence 444455555566555566652222221 222222 489999999887777664 555666553221
Q ss_pred CcCCCCCCCCCCcceeecccccccccCC-CCcEEEEEeCCCeEEEEecCCcEEEecCCCCCCCccCcccceEeeCC--CC
Q 038610 105 QCGEEPERKDDTGRILRRDIVIPQRCAP-KLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGL--EQ 181 (374)
Q Consensus 105 qlg~~~~~~~~~~~~~~~~~~~p~~~~~-~~~i~~i~~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~--~~ 181 (374)
.-...+.++. ..+|+.+.+...---.++++|++|+.|... ....-.-..+..+ .-
T Consensus 557 ------------------~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~t----m~~n~SSqmln~L~~~~ 614 (3738)
T KOG1428|consen 557 ------------------NGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHT----MRVNVSSQMLNGLDNVM 614 (3738)
T ss_pred ------------------ccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeeccee----EEecchHHHhhccccce
Confidence 1111122222 567888876666666889999999999761 1110011112222 34
Q ss_pred eeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCcc---------------------------------------
Q 038610 182 VKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ--------------------------------------- 222 (374)
Q Consensus 182 i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~--------------------------------------- 222 (374)
|.+++.|..|.++++.+|.||.||-|+.+|+|.-++.....
T Consensus 615 isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gv 694 (3738)
T KOG1428|consen 615 ISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGV 694 (3738)
T ss_pred eehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccc
Confidence 88999999999999999999999999999999643211100
Q ss_pred ------------------------------------------------------------ceeec---cCCCCcEEEEEe
Q 038610 223 ------------------------------------------------------------PIPVQ---GLSGLTLVDIAA 239 (374)
Q Consensus 223 ------------------------------------------------------------p~~~~---~~~~~~i~~i~~ 239 (374)
|..+. ..-..++.+|+|
T Consensus 695 aC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSC 774 (3738)
T KOG1428|consen 695 ACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSC 774 (3738)
T ss_pred ccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEec
Confidence 00000 011248999999
Q ss_pred cCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccC
Q 038610 240 GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319 (374)
Q Consensus 240 G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG 319 (374)
|..|+++|.+|++||.+|+|.+||||.++ ......|+.+..+.+..|++|++|.+|++++..||+||.+|.-..||||
T Consensus 775 G~~HtVlL~sd~~VfTFG~~~HGQLG~GD--t~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~ 852 (3738)
T KOG1428|consen 775 GNFHTVLLASDRRVFTFGSNCHGQLGVGD--TLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLA 852 (3738)
T ss_pred cCceEEEEecCCcEEEecCCcccccCcCc--cccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCcccc
Confidence 99999999999999999999999999999 6788899999999888999999999999999999999999999999999
Q ss_pred CCCCCC---CCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEE
Q 038610 320 YGRKVT---TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366 (374)
Q Consensus 320 ~g~~~~---~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~ 366 (374)
..--.. -..|.+++-.-|.+ +.+..=|.+.+..|++-.
T Consensus 853 RP~~e~~~WNA~Pe~v~~~G~~f---------~~~A~WIGAdGDss~i~~ 893 (3738)
T KOG1428|consen 853 RPAGEKAGWNAIPEKVSGFGPGF---------NAFAGWIGADGDSSIIHS 893 (3738)
T ss_pred CccccccccccCCCcCCCCCccc---------cccceeeccCCCcceeeh
Confidence 754322 13344443322221 223445666666666543
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.90 E-value=7e-24 Score=198.29 Aligned_cols=208 Identities=28% Similarity=0.452 Sum_probs=168.5
Q ss_pred EEEecCCcEEEecCC----CCCCCccCcccceEeeCCC----CeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCC
Q 038610 147 VVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGLE----QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ 218 (374)
Q Consensus 147 ~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~~----~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~ 218 (374)
.+++.-+.||+||.| ++.+.......|..+..+. -+.+|..+.+|++++++.|+||++|.+.-|.||.++..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 455667899999998 6677777777887777663 37889999999999999999999999999999999999
Q ss_pred CCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecC--C-CCcEEEEEccC
Q 038610 219 PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL--A-GEDIVQVSCGG 295 (374)
Q Consensus 219 ~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~--~-~~~i~~i~~G~ 295 (374)
....|..++.+.+.+|.+|++...|+++||..|-||+||.|..+|||..+. ......|..|... . ...|+.|+||.
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~-~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSND-ELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCc-hhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999999764 3444445444421 1 14799999999
Q ss_pred CeEEEEecCCCEEEEeCCCCCccCCCCCCC-CCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeecc
Q 038610 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVT-TGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQT 370 (374)
Q Consensus 296 ~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~-~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~~ 370 (374)
.|+++.+.. .||+||-|. ||||+.+... ...|..+... ...++.|+|-..-|+++.++++
T Consensus 295 ~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~-------------~~~v~~v~a~~~ATVc~~~~~~ 355 (1267)
T KOG0783|consen 295 SHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL-------------LSPVIHVVATTRATVCLLQNNS 355 (1267)
T ss_pred ceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc-------------ccceEEEEecCccEEEEecCCc
Confidence 999999954 799999975 9999876533 3444322111 1238899999999999988543
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-19 Score=176.43 Aligned_cols=234 Identities=26% Similarity=0.372 Sum_probs=153.2
Q ss_pred eecccCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCC-------CCcEEEE
Q 038610 67 QVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP-------KLIVRQV 139 (374)
Q Consensus 67 ~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~i~~i 139 (374)
.+..+++.-|.+++.|..|.++++.+|+||.||.|+.+|+|.-............... .-...+. ...-+-.
T Consensus 606 mln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~-e~~iCP~G~HtW~~dt~~VCa 684 (3738)
T KOG1428|consen 606 MLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQ-EYQICPIGEHTWLTDTPSVCA 684 (3738)
T ss_pred HhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccce-eecccCCccceeecCCcchhh
Confidence 3455677889999999999999999999999999999999985543222110000000 0000010 1111111
Q ss_pred EeCCCe----EEEE--ecCCcEEEecCC----------CCCCC--------------ccCccc-------ceEeeC----
Q 038610 140 AAGGTH----SVVL--TREGHVWTWGQP----------WPPGD--------------IKQISV-------PVRVQG---- 178 (374)
Q Consensus 140 ~~g~~~----~~~l--t~~g~v~~~G~~----------~~~~~--------------~~~~~~-------p~~i~~---- 178 (374)
.||.-. ++.- .-.|.+-.+|.. ...++ ...... |..+..
T Consensus 685 ~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~ 764 (3738)
T KOG1428|consen 685 QCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGP 764 (3738)
T ss_pred hcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCC
Confidence 222111 0100 012334334332 01111 111111 221111
Q ss_pred -CCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEe
Q 038610 179 -LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257 (374)
Q Consensus 179 -~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG 257 (374)
.-++.+|+||..|+++|-++++||.+|.|-.||||.++......|+++..+.+..|++|++|.+|++++..||+||.+|
T Consensus 765 Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFG 844 (3738)
T KOG1428|consen 765 HDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFG 844 (3738)
T ss_pred cceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEec
Confidence 1468899999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-CCccccceEeecCC---CCcEEEEEccCCeEEEE
Q 038610 258 RGEHGRLGFGDND-KSSKMVPQKVNLLA---GEDIVQVSCGGTHSVAL 301 (374)
Q Consensus 258 ~n~~gqlG~~~~~-~~~~~~p~~v~~~~---~~~i~~i~~G~~~~~~l 301 (374)
.-..|||+...-+ ......|.++..+. +.....|.+.++.+++-
T Consensus 845 aF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 845 AFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred cccCccccCccccccccccCCCcCCCCCccccccceeeccCCCcceee
Confidence 9999999986532 22334666666542 23455666666655543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.36 E-value=1.4e-12 Score=83.95 Aligned_cols=50 Identities=32% Similarity=0.518 Sum_probs=37.9
Q ss_pred CCcEEEeeCCCCCCcC-CCCCcceeeeEEeeccCCCceEEEecCCcceEEE
Q 038610 4 TTSIIAWGSGEDGQLG-IGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAI 53 (374)
Q Consensus 4 ~g~v~~wG~n~~GqLG-~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l 53 (374)
||+||+||.|.+|||| .+.......|++++.+...+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 7777777888887776655555555555555543
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.35 E-value=1.3e-12 Score=84.15 Aligned_cols=50 Identities=52% Similarity=0.968 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCCCCC-CCCCCCCccccceEeecCCCCcEEEEEccCCeEEEE
Q 038610 250 DGEVYGWGRGEHGRLG-FGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVAL 301 (374)
Q Consensus 250 ~g~vy~wG~n~~gqlG-~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l 301 (374)
||+||+||.|.+|||| .+. ......|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~--~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGD--NKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSS--SSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCC--CCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 555 7889999999999888999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.29 E-value=4.2e-12 Score=70.91 Aligned_cols=30 Identities=50% Similarity=1.051 Sum_probs=26.1
Q ss_pred eEEEeccCceeEEEeCCCcEEEEeCCCCCC
Q 038610 76 IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 105 (374)
Q Consensus 76 i~~i~~G~~~~~~lt~~g~v~~wG~n~~gq 105 (374)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.27 E-value=7.1e-12 Score=69.98 Aligned_cols=30 Identities=43% Similarity=1.008 Sum_probs=26.1
Q ss_pred EEEEEccCCeEEEEecCCCEEEEeCCCCCc
Q 038610 288 IVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317 (374)
Q Consensus 288 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gq 317 (374)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-12 Score=124.97 Aligned_cols=178 Identities=30% Similarity=0.537 Sum_probs=139.0
Q ss_pred CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEec-------CCC
Q 038610 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTD-------DGE 252 (374)
Q Consensus 180 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~-------~g~ 252 (374)
.+|.+++||.+|+++++..|+++.||.|.+||+|.+.......|.+++.+.+.+..+|++|.+|++++.. .|.
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~ 93 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGK 93 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhcc
Confidence 5799999999999999999999999999999999985555555888999999999999999998887766 999
Q ss_pred EEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEe-cCCCEEEEeCCCCCccCCCCCCCCCCcee
Q 038610 253 VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALT-RDGHIFSFGRGDHGRLGYGRKVTTGQPME 331 (374)
Q Consensus 253 vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt-~~g~vy~~G~n~~gqLG~g~~~~~~~p~~ 331 (374)
++.+|....||+|... ......|..+....+..+..|+||..|++++. .-|++|.+|.+..| .| ....+.
T Consensus 94 ~fs~Ga~~~~q~~h~~--~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~---~i~s~s- 164 (850)
T KOG0941|consen 94 VFSFGAGSTGQLGHSL--TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KG---VIVSLS- 164 (850)
T ss_pred ccccCCcccccccccc--cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cc---eeeccc-
Confidence 9999999999999955 56777787777777789999999999998876 45899999998887 11 011110
Q ss_pred eeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeeccc
Q 038610 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371 (374)
Q Consensus 332 v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~~~ 371 (374)
.+ -.....+......+..++.|+..++.+....+.
T Consensus 165 ----~~-~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 165 ----GE-DLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred ----hh-hhcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 00 000111223344566789999999998876644
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.3e-12 Score=121.70 Aligned_cols=129 Identities=34% Similarity=0.496 Sum_probs=107.5
Q ss_pred ccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEec---
Q 038610 227 QGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTR--- 303 (374)
Q Consensus 227 ~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~--- 303 (374)
..+...+|.+++||.+|+++++..|++|+||.|.+||+|.+.. ..+.. |.+++.+.+.+..+|++|.+|++++..
T Consensus 9 ~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~-~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~ 86 (850)
T KOG0941|consen 9 LILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY-FPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTV 86 (850)
T ss_pred HHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc-CCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchh
Confidence 3333457999999999999999999999999999999999842 44444 999998888999999999999987766
Q ss_pred ----CCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 304 ----DGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 304 ----~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
.|.++.+|....+|+|++...+...|..+...+.. .+.+|+||..||++++...
T Consensus 87 ~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~------------~~t~ia~~~~ht~a~v~~l 144 (850)
T KOG0941|consen 87 LLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGS------------RVTRIACVRGHTLAIVPRL 144 (850)
T ss_pred hcchhccccccCCcccccccccccccccccHHHHHHHhh------------hhHHHHHHHHHHHhhhhhh
Confidence 99999999999999999777777777666444333 5889999999999876543
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.62 E-value=1.4 Score=42.02 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=70.6
Q ss_pred eCCCeEEEEecCCcEEEecCC---CCCCCccCcccceEeeCCCCeeEEEECC-ceEEEEecCCcEEE-EecCCCCCCCCC
Q 038610 141 AGGTHSVVLTREGHVWTWGQP---WPPGDIKQISVPVRVQGLEQVKLIAVGA-FHNLALQEDGALWA-WGNNEYGQLGTG 215 (374)
Q Consensus 141 ~g~~~~~~lt~~g~v~~~G~~---~~~~~~~~~~~p~~i~~~~~i~~i~~g~-~~~~~l~~~g~v~~-~G~n~~gqlG~~ 215 (374)
.|.....+|..+|++|.---- ...+. .-+.+....++.+|++|. ....+++.+|.||. .|-..+.+.|..
T Consensus 190 ~g~~~awAI~s~Gd~y~RtGvs~~~P~Gr-----aW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gds 264 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLRTGVSVDRPCGR-----AWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDS 264 (705)
T ss_pred CCceEEEEEecCCcEEEeccccCCCCCCc-----eeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCCch
Confidence 556677789999999973211 01111 111222224689999998 78889999999764 777666666654
Q ss_pred CCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEE
Q 038610 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256 (374)
Q Consensus 216 ~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~w 256 (374)
-. ....|... ..++.|+.|....-+|+.+|.+|.-
T Consensus 265 Wk-dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 265 WK-DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred hh-hccCcccc-----cceEEEEeccceEEEEecCCcEEEE
Confidence 33 33333332 2489999999999999999999864
No 16
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.24 E-value=1.9 Score=41.16 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=68.6
Q ss_pred ccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC-CeEEEEecCCcEEE-e
Q 038610 81 IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG-THSVVLTREGHVWT-W 158 (374)
Q Consensus 81 ~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~-~~~~~lt~~g~v~~-~ 158 (374)
.|.....||+.+|++|-= -|...... .-...+.+.....+.+|++|. ....+++.+|.||. -
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P---------~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~ 253 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRP---------CGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYRE 253 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCC---------CCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEe
Confidence 455666788888888752 22222111 111122233344789999998 77789999999876 3
Q ss_pred cC---CCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEE
Q 038610 159 GQ---PWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAW 204 (374)
Q Consensus 159 G~---~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~ 204 (374)
|- |......+++.+|.... .++.|+.|....-+|+++|++|.-
T Consensus 254 GVsRqNp~GdsWkdI~tP~~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 254 GVSRQNPEGDSWKDIVTPRQAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred cccccCCCCchhhhccCccccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 32 22233345666666553 389999999999999999999873
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.10 E-value=1 Score=48.37 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=103.0
Q ss_pred EEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEE
Q 038610 78 QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWT 157 (374)
Q Consensus 78 ~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~ 157 (374)
+=..|..|+++|.++|.=|.=|+|-.-.|=..... -+|... ....-.-+-.|+.-.++|. +|+|+.
T Consensus 562 kd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~------------GL~~~~-~p~~~~~ldl~r~G~v~L~-~G~i~~ 627 (1774)
T PF11725_consen 562 KDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTR------------GLPKPP-APAPHEILDLGRAGLVGLQ-DGKIQY 627 (1774)
T ss_pred eccCCceeeccccccCCccCCCCcccceeEeeccC------------CCCCCC-CCChHHhhccccccceeec-cceEee
Confidence 33456677777777777776666654333222211 111110 0111122344666777887 499999
Q ss_pred ecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCC-CCCCCCCCCCC------Cccc---eeec
Q 038610 158 WGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE-YGQLGTGDTQP------RSQP---IPVQ 227 (374)
Q Consensus 158 ~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~-~gqlG~~~~~~------~~~p---~~~~ 227 (374)
|-... ..++.. ..+.|.++.-|.+...++..+|+|--.--+. +.-+-.+.... +..| ..+.
T Consensus 628 wD~tt--q~W~~~-------~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~ 698 (1774)
T PF11725_consen 628 WDSTT--QCWKDA-------GVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALE 698 (1774)
T ss_pred ecCcc--hhhhhc-------cCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCcccc
Confidence 98650 000000 0124555555666666666777664333221 11111111111 1111 2344
Q ss_pred cCCCCcEEEEE-ecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEee--cCCCCcEEEEEccCCeE-EEEec
Q 038610 228 GLSGLTLVDIA-AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN--LLAGEDIVQVSCGGTHS-VALTR 303 (374)
Q Consensus 228 ~~~~~~i~~i~-~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~--~~~~~~i~~i~~G~~~~-~~lt~ 303 (374)
.+.+..|..++ .+.++.++|++.|+|-..= .... |..+. .+ ..+|++|+.-..|. ++++.
T Consensus 699 Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~-------------k~g~--p~~l~~~gl-~G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 699 GLEDRVITAFAVVNDNKFVALDDQGDLTAHQ-------------KPGR--PVPLSRPGL-SGEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred CCCcCcceeEEEEcCCceEEeccCCcccccc-------------CCCC--CccCCCCCC-CcchhheeeccccceeEecC
Confidence 45555666664 3778999999998875432 0111 33333 23 36899999988855 67999
Q ss_pred CCCEEEEe
Q 038610 304 DGHIFSFG 311 (374)
Q Consensus 304 ~g~vy~~G 311 (374)
+|+||..=
T Consensus 763 ~G~Lf~~~ 770 (1774)
T PF11725_consen 763 TGELFRLP 770 (1774)
T ss_pred CCceeecC
Confidence 99999854
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=0.031 Score=56.96 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeeccccccccc---CCCCcEEEEEeCCCeEEEE
Q 038610 73 NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC---APKLIVRQVAAGGTHSVVL 149 (374)
Q Consensus 73 ~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~---~~~~~i~~i~~g~~~~~~l 149 (374)
..+++.|.+-.+..++|..+|++|.|-+...--+-.+-.... ....|... ....+|+.+++.+-..-++
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~k--------n~dHPd~a~iG~hge~ii~lSanniR~si~ 444 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINK--------NLDHPDAAFIGLHGEKIILLSANNIRASIA 444 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhccc--------CCCCCccceecccCCeeEEeecCceeeeee
Confidence 457888888889999999999999998766432222111100 22223222 1278999999999999999
Q ss_pred ecCCcEEEecCCCCCCCccCc--ccceEeeCC-CCeeEEEECCceEEEEecCCcEEEEecCCC
Q 038610 150 TREGHVWTWGQPWPPGDIKQI--SVPVRVQGL-EQVKLIAVGAFHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 150 t~~g~v~~~G~~~~~~~~~~~--~~p~~i~~~-~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~ 209 (374)
|++|+|-.|=.-.+.+-.... ...+++... ..+++..|...|.++...++-+|.||---+
T Consensus 445 T~nghlasWlDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 445 TENGHLASWLDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred ecCCchhhHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 999999999654221111111 111222222 456777788888888889999999995443
No 19
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=89.78 E-value=11 Score=38.36 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=76.3
Q ss_pred ccCceeEEEeCCCc-EEEEeCCCCCCcCCCCCCCCCCcceeecccccccccC-CCCcEEEEEeCCCeEEEEecCCcE--E
Q 038610 81 IGGWHCLAVDDQGR-AYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA-PKLIVRQVAAGGTHSVVLTREGHV--W 156 (374)
Q Consensus 81 ~G~~~~~~lt~~g~-v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~-~~~~i~~i~~g~~~~~~lt~~g~v--~ 156 (374)
.++...++++.+|+ |+++|.+.. +-.-.... +...|..+. ..+.|..|+|-..+.+.-++++.| |
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~--ir~~~~~s---------d~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD--IRKWKTNS---------DEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRY 81 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc--eEEeecCC---------cccCCchhhccCceeEEEeecccceEEeeccceEEEe
Confidence 34455667777775 566665532 21111110 224566565 688899999999998888888864 5
Q ss_pred EecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEE
Q 038610 157 TWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVD 236 (374)
Q Consensus 157 ~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~ 236 (374)
.++.....+.......| +. .+++.-+|+..+.|..+++--=... ......+.+... ..+|.+
T Consensus 82 ~fps~~~~~iL~Rftlp--------~r--------~~~v~g~g~~iaagsdD~~vK~~~~-~D~s~~~~lrgh-~apVl~ 143 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLP--------IR--------DLAVSGSGKMIAAGSDDTAVKLLNL-DDSSQEKVLRGH-DAPVLQ 143 (933)
T ss_pred eCCCCCccceeeeeecc--------ce--------EEEEecCCcEEEeecCceeEEEEec-cccchheeeccc-CCceee
Confidence 45544222222222222 22 1344455666666655433211100 011111111111 134444
Q ss_pred EE--ecCCeEEEEecCCCEEEEeC
Q 038610 237 IA--AGGWHSTALTDDGEVYGWGR 258 (374)
Q Consensus 237 i~--~G~~~~~~lt~~g~vy~wG~ 258 (374)
|. .-.++-++.+-||+|++|--
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEc
Confidence 43 34456677788999999974
No 20
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.20 E-value=1.5 Score=47.17 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=75.6
Q ss_pred eecccCCCCeEEEe-ccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCe
Q 038610 67 QVNALSNTKIVQAA-IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTH 145 (374)
Q Consensus 67 ~~~~~~~~~i~~i~-~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~ 145 (374)
.+..+++..|..++ .+.+++++|++.|+|-..- .-|. +..++.. -....|+++++-..|
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g~-----------------p~~l~~~-gl~G~ik~l~lD~~~ 755 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPGR-----------------PVPLSRP-GLSGEIKDLALDEKQ 755 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--CCCC-----------------CccCCCC-CCCcchhheeecccc
Confidence 45556677777777 7889999999999886642 1111 1112211 015789999998775
Q ss_pred -EEEEecCCcEEEecCC-----CCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCC
Q 038610 146 -SVVLTREGHVWTWGQP-----WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDG 199 (374)
Q Consensus 146 -~~~lt~~g~v~~~G~~-----~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g 199 (374)
.++++.+|+||..-.- ...........|..++...+|..+....+|.+.+.-++
T Consensus 756 nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 756 NLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeEecCCCceeecCHHHhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 5689999999996543 22222334555666666688999999988888876554
No 21
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.12 E-value=2.4 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.3
Q ss_pred CcEEEEEecCCeEEEEecCCCEEEEeCCC
Q 038610 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGE 260 (374)
Q Consensus 232 ~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 260 (374)
.++..+.|-..+.++||++|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 57888999999999999999999997543
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.82 E-value=14 Score=31.72 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=58.4
Q ss_pred CcEEEEE--eCCCeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEEC--CceEEEEecCCcEEEEecCCC
Q 038610 134 LIVRQVA--AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVG--AFHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 134 ~~i~~i~--~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~ 209 (374)
..|..|. |-..-.+-=.+||.+-+|-... ...+.......+|..|.-- ..+-+.-+.+|.|++|--..
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-------~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~- 155 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-------LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE- 155 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC-------cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC-
Confidence 3444443 3333333345677777776541 1112222222445555443 34555667889999996432
Q ss_pred CCCCCCCCCCCccceeeccCCCCcEEEEEecCCeE--EEEecCCCEEEEeCCC
Q 038610 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHS--TALTDDGEVYGWGRGE 260 (374)
Q Consensus 210 gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~--~~lt~~g~vy~wG~n~ 260 (374)
........|... ..|.+++...+-+ ++.++.|++|+|-.-.
T Consensus 156 -----~~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 156 -----NSCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred -----CccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 112222222221 5677777766644 4678889999998543
No 23
>PHA03098 kelch-like protein; Provisional
Probab=87.52 E-value=13 Score=36.44 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=11.1
Q ss_pred ceEEEEecCCcEEEEec
Q 038610 190 FHNLALQEDGALWAWGN 206 (374)
Q Consensus 190 ~~~~~l~~~g~v~~~G~ 206 (374)
.|++ ...++++|++|-
T Consensus 382 ~~~~-~~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCV-VNVNNLIYVIGG 397 (534)
T ss_pred cceE-EEECCEEEEECC
Confidence 4444 346789999985
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=0.047 Score=55.80 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=86.5
Q ss_pred CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCC--CCCCCcccee-eccCCCCcEEEEEecCCeEEEEecCCCEEEE
Q 038610 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG--DTQPRSQPIP-VQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256 (374)
Q Consensus 180 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~--~~~~~~~p~~-~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~w 256 (374)
.++..|.+-.+..++|..+|++|.|-+...--+... -..+..-|.. ...+.+.+|+.+++..-..-++|++|+|..|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 567778888888899999999999998875444331 1112222221 1234568999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCc
Q 038610 257 GRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGR 317 (374)
Q Consensus 257 G~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gq 317 (374)
=+- .|.+-...-....-+++.. .+..+++..|-..|+++..+++-||-||--...|
T Consensus 454 lDE----cgagV~fkLa~ea~Tkiee-d~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 454 LDE----CGAGVAFKLAHEAQTKIEE-DGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred Hhh----hhhhhhhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 642 1111100111111222222 2345667777788999999999999999544333
No 25
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=86.19 E-value=24 Score=36.02 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=25.6
Q ss_pred ccceEee-CCCCeeEEEECCceEEEEecCCcE--EEEec
Q 038610 171 SVPVRVQ-GLEQVKLIAVGAFHNLALQEDGAL--WAWGN 206 (374)
Q Consensus 171 ~~p~~i~-~~~~i~~i~~g~~~~~~l~~~g~v--~~~G~ 206 (374)
..|..|. ..+.|..|++-.+|.+.-+.++.| |-+++
T Consensus 47 e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 47 EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 4565565 557788899988888888888764 44443
No 26
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.80 E-value=4.5 Score=34.47 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCcEEEEEeCCCeEEEEecCCcEEEecCC
Q 038610 133 KLIVRQVAAGGTHSVVLTREGHVWTWGQP 161 (374)
Q Consensus 133 ~~~i~~i~~g~~~~~~lt~~g~v~~~G~~ 161 (374)
..++..+.|..++.+++|++|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 55778899999999999999999999765
No 27
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.38 E-value=27 Score=32.37 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEE
Q 038610 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSF 310 (374)
Q Consensus 241 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~ 310 (374)
..+.++.+.+|.||++-..+ |++ . .+.+.....-...-..-.++.++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~--------~----~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSF--------V----ARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCE--------E----EEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 34677778899999986432 211 0 011111100111112233578888899999986
No 28
>PHA02713 hypothetical protein; Provisional
Probab=83.93 E-value=13 Score=36.77 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=11.0
Q ss_pred EEEecCCcEEEecCC
Q 038610 147 VVLTREGHVWTWGQP 161 (374)
Q Consensus 147 ~~lt~~g~v~~~G~~ 161 (374)
.+..-+|+||++|..
T Consensus 346 ~~~~~~g~IYviGG~ 360 (557)
T PHA02713 346 SLAVIDDTIYAIGGQ 360 (557)
T ss_pred eEEEECCEEEEECCc
Confidence 344457899999975
No 29
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=82.38 E-value=19 Score=35.71 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=16.5
Q ss_pred EEEccCCeEEEEecCCCEEEEeC
Q 038610 290 QVSCGGTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 290 ~i~~G~~~~~~lt~~g~vy~~G~ 312 (374)
.+.....+..+..-++++|+-|-
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred cCccccccccEEEECCEEEEEec
Confidence 34456666666667899999986
No 30
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=81.65 E-value=47 Score=31.21 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=73.5
Q ss_pred CeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEe--
Q 038610 75 KIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT-- 150 (374)
Q Consensus 75 ~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt-- 150 (374)
++..+++.. .+.++=|..|++|.|-.+. |.|-.--.. --..|..+....+-++++|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-------------------HYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-------------------HYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh-------------------hccceeEEEEeCCCcEEEecC
Confidence 355555443 3344445789999997654 222111110 1334666666666666665
Q ss_pred cCCcEEEecCCCCCC-CccCcccceEeeCC--CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeec
Q 038610 151 REGHVWTWGQPWPPG-DIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~-~~~~~~~p~~i~~~--~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~ 227 (374)
+||.|++|-.-.-.. +......|..+... -.|+++.+|..- .+.+||+.+...--.+= +...-.....+.
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~w--dlS~g~LLlti~ 215 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLW--DLSLGVLLLTIT 215 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEE--EeccceeeEEEe
Confidence 679999997651111 11113344433322 568888776553 23344443321100000 000000011111
Q ss_pred cCCCCcEEEEEecCCeEEEEecCCCEEEEe
Q 038610 228 GLSGLTLVDIAAGGWHSTALTDDGEVYGWG 257 (374)
Q Consensus 228 ~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG 257 (374)
.+...+..-+.-+..+.++=+++|++|..=
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 111122333444667777778889888644
No 31
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=80.13 E-value=3.4 Score=23.40 Aligned_cols=24 Identities=29% Similarity=0.478 Sum_probs=21.2
Q ss_pred CeEEEeccC-ceeEEEeCCCcEEEE
Q 038610 75 KIVQAAIGG-WHCLAVDDQGRAYAW 98 (374)
Q Consensus 75 ~i~~i~~G~-~~~~~lt~~g~v~~w 98 (374)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 889999999999863
No 32
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=80.09 E-value=5 Score=22.70 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=21.8
Q ss_pred CcEEEEEecC-CeEEEEecCCCEEEE
Q 038610 232 LTLVDIAAGG-WHSTALTDDGEVYGW 256 (374)
Q Consensus 232 ~~i~~i~~G~-~~~~~lt~~g~vy~w 256 (374)
..+++|++|. +...+++.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 888899999999963
No 33
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.01 E-value=34 Score=30.09 Aligned_cols=227 Identities=18% Similarity=0.145 Sum_probs=111.6
Q ss_pred CCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCCeeeeecCeeecccCCCCeEEEec
Q 038610 2 ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAI 81 (374)
Q Consensus 2 ~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~~~~~~p~~~~~~~~~~i~~i~~ 81 (374)
..||.||.-++. .|.+|+-+...- +-+.+..-+...-.-|..|.+-+..+++.+..-.+.-|.......-.--.+.+-
T Consensus 70 apdG~VWft~qg-~gaiGhLdP~tG-ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~ 147 (353)
T COG4257 70 APDGAVWFTAQG-TGAIGHLDPATG-EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHAD 147 (353)
T ss_pred CCCCceEEecCc-cccceecCCCCC-ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCC
Confidence 468888876664 566777665321 223334444556677788888888888888622222221111000000133445
Q ss_pred cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCC
Q 038610 82 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161 (374)
Q Consensus 82 G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~ 161 (374)
+.-.+.+++.+|+||--|.+. ..|.-+.... .......|. -+.-+-++.|-+|+||..-..
T Consensus 148 ~nlet~vfD~~G~lWFt~q~G--~yGrLdPa~~-----~i~vfpaPq------------G~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQIG--AYGRLDPARN-----VISVFPAPQ------------GGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred CcccceeeCCCccEEEeeccc--cceecCcccC-----ceeeeccCC------------CCCCcceEECCCCcEEEEecc
Confidence 566788899999999998643 3332221111 001122221 235577899999999986321
Q ss_pred ---CCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCC-CCCccceeeccCCCCcEEEE
Q 038610 162 ---WPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQPIPVQGLSGLTLVDI 237 (374)
Q Consensus 162 ---~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~-~~~~~p~~~~~~~~~~i~~i 237 (374)
...-+.... .+..++..+. ...| ...+-.+.-|++|..-.+. |++..-+. ......-+++..+
T Consensus 209 gnaiaridp~~~-~aev~p~P~~---~~~g-sRriwsdpig~~wittwg~-g~l~rfdPs~~sW~eypLPgs~------- 275 (353)
T COG4257 209 GNAIARIDPFAG-HAEVVPQPNA---LKAG-SRRIWSDPIGRAWITTWGT-GSLHRFDPSVTSWIEYPLPGSK------- 275 (353)
T ss_pred ccceEEcccccC-CcceecCCCc---cccc-ccccccCccCcEEEeccCC-ceeeEeCcccccceeeeCCCCC-------
Confidence 100000000 1111111111 1111 1223345567777642222 34433222 1222333333221
Q ss_pred EecCCeEEEEecCCCEEE--EeCCCCCCC
Q 038610 238 AAGGWHSTALTDDGEVYG--WGRGEHGRL 264 (374)
Q Consensus 238 ~~G~~~~~~lt~~g~vy~--wG~n~~gql 264 (374)
-.-.++.++..|.||. |+.|..+|+
T Consensus 276 --arpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 276 --ARPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred --CCcceeeeccCCcEEeeccccCceeec
Confidence 1235667888899997 777777766
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.86 E-value=71 Score=32.19 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=63.8
Q ss_pred eEEEeccCc--eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEE--ec
Q 038610 76 IVQAAIGGW--HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVL--TR 151 (374)
Q Consensus 76 i~~i~~G~~--~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~l--t~ 151 (374)
|-+++.+.. .++++...|.-.++|...-|||..-.-... . .+.++-.-...+..++-..+-.++. .+
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--------s-YVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--------S-YVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--------c-eeeeccccccceeeEEECCCCcEEEeccC
Confidence 556666644 356666778888889888888876432211 1 1111111133455555554433333 35
Q ss_pred CCcEEEecCCCCCCCccCcccceEeeCC--CCeeEEEECCceEEEEecCCcEEEEecCCC
Q 038610 152 EGHVWTWGQPWPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 152 ~g~v~~~G~~~~~~~~~~~~~p~~i~~~--~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~ 209 (374)
||+|-+|-...+.-- -+.-+.. -...++..-.+..+...-||.|-+|--..|
T Consensus 371 DgKVKvWn~~SgfC~------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCF------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred CCcEEEEeccCceEE------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 677777765411000 0000111 224555666677777778899999976554
No 35
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=1.1e+02 Score=33.13 Aligned_cols=209 Identities=18% Similarity=0.162 Sum_probs=99.9
Q ss_pred EEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCCCCCCC
Q 038610 87 LAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGD 166 (374)
Q Consensus 87 ~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~~~~~~ 166 (374)
+=+|.|++||-|-.+..+++-.-+..... +.......|+. +..+-. -.|.+++.+--+|+..|-......
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~sht---Il~V~LvkPkp---gvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHT---ILKVGLVKPKP---GVFVPE----IQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhh---heeeeeecCCC---Ccchhh----hheeEEecccceEEEEEEEecccc
Confidence 45789999999998887776443322111 11111111111 111111 237888888888888875421111
Q ss_pred ccCcccceEeeCCCCeeEEEE-CCceEEEE-ecCCcEEEEecCCC-----CCCCCCCC-------------CCCccceee
Q 038610 167 IKQISVPVRVQGLEQVKLIAV-GAFHNLAL-QEDGALWAWGNNEY-----GQLGTGDT-------------QPRSQPIPV 226 (374)
Q Consensus 167 ~~~~~~p~~i~~~~~i~~i~~-g~~~~~~l-~~~g~v~~~G~n~~-----gqlG~~~~-------------~~~~~p~~~ 226 (374)
.... .+...-+|.. |-+-.++. +++|+||.-|.+.. -|...+-. -....|..+
T Consensus 163 ~~~~-------~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 163 GELS-------IFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred Cccc-------ccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 1100 0111133333 33434444 77788887775531 01111110 011224322
Q ss_pred c--cCCCCcEEEEEecCCeEE--EEecCCCEEEEeCCCCCCCCCCCC-------CCCccccceEeecCCCCcEEEEEc--
Q 038610 227 Q--GLSGLTLVDIAAGGWHST--ALTDDGEVYGWGRGEHGRLGFGDN-------DKSSKMVPQKVNLLAGEDIVQVSC-- 293 (374)
Q Consensus 227 ~--~~~~~~i~~i~~G~~~~~--~lt~~g~vy~wG~n~~gqlG~~~~-------~~~~~~~p~~v~~~~~~~i~~i~~-- 293 (374)
. ....+.|++|+......+ ++++.|.|=+|--...|+-+.-.. +......-..+.......|++|..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~ 315 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLS 315 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccC
Confidence 1 223568999999877654 567778777775444444332110 000000000010111123455443
Q ss_pred ----cCCeEEEEecCC-CEEEEeC
Q 038610 294 ----GGTHSVALTRDG-HIFSFGR 312 (374)
Q Consensus 294 ----G~~~~~~lt~~g-~vy~~G~ 312 (374)
-.-|.+++|..| ++|.-|.
T Consensus 316 ~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 316 ASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccccceeEEEEecCCeEEEEecc
Confidence 467899999988 5666554
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=75.92 E-value=52 Score=28.48 Aligned_cols=69 Identities=12% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCeEEEecc--CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCC--eEEEE
Q 038610 74 TKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT--HSVVL 149 (374)
Q Consensus 74 ~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~l 149 (374)
.+|-.|..- ..+.+.-+.+|.|+.|-...+-. . ...+|.. ...|.++....+ ..++.
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c------~----------~~liPe~---~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC------T----------HELIPED---DTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCcc------c----------cccCCCC---CcceeeEEEcCCCcEEEEe
Confidence 356666644 44566667889999997433210 0 1122221 345666666554 45577
Q ss_pred ecCCcEEEecCC
Q 038610 150 TREGHVWTWGQP 161 (374)
Q Consensus 150 t~~g~v~~~G~~ 161 (374)
++.|+.|+|-..
T Consensus 186 nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 186 NNKGNCYVWRLL 197 (311)
T ss_pred cCCccEEEEEcc
Confidence 889999999875
No 37
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=73.78 E-value=1.2e+02 Score=31.61 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=107.3
Q ss_pred CCCeEEEe--ccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC-----CCe
Q 038610 73 NTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-----GTH 145 (374)
Q Consensus 73 ~~~i~~i~--~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g-----~~~ 145 (374)
+..+..+. ....+.+++|+.|++|..-...--..+...... ....-..+...++|+.+.+- ..+
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~---------~i~~ll~L~~~E~Iv~~i~~~~~~~~~~ 604 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK---------PIVNLLPLQPDERITAILSVKEFDDGLY 604 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc---------CHHHhccCCCCCeEEEEEEeccCCCCCE
Confidence 33455443 446668999999999998432221111111000 11001123446677776652 235
Q ss_pred EEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEE--CCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccc
Q 038610 146 SVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 146 ~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
.+++|++|.+--.-..........-..-..+...+.+..+.. ...+.+++|++|++|.+-...--..+.... .
T Consensus 605 lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----G 679 (800)
T TIGR01063 605 LFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----G 679 (800)
T ss_pred EEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----C
Confidence 678888887665433200000000000011112234444433 345688999999999986655433332221 1
Q ss_pred ee-eccCCCCcEEEEEec--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC-CCcEEEE--EccCCe
Q 038610 224 IP-VQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-GEDIVQV--SCGGTH 297 (374)
Q Consensus 224 ~~-~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~-~~~i~~i--~~G~~~ 297 (374)
.. +....+++|+.+..- ..+.+++|++|.+.-.=-.++-....+. . --..+.... ...++.+ ....+.
T Consensus 680 v~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~--k----Gv~~ikl~~~~d~lv~~~~v~~~~~ 753 (800)
T TIGR01063 680 VRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG--K----GVKSIKITDRNGQVVGAIAVDDDDE 753 (800)
T ss_pred eecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC--c----ceEEEEccCCCCeEEEEEEecCCCe
Confidence 11 222244667766543 2356778888866655432221111100 0 000111111 1233322 224456
Q ss_pred EEEEecCCCEEEEeCCCCCcc
Q 038610 298 SVALTRDGHIFSFGRGDHGRL 318 (374)
Q Consensus 298 ~~~lt~~g~vy~~G~n~~gqL 318 (374)
.++++.+|++.-+-.++--.+
T Consensus 754 v~liT~~G~~lrf~~~eI~~~ 774 (800)
T TIGR01063 754 LMLITSAGKLIRTSVQDVSEQ 774 (800)
T ss_pred EEEEecCCeEEEeeHhhCCcc
Confidence 788888888877765543333
No 38
>PRK05560 DNA gyrase subunit A; Validated
Probab=69.90 E-value=1.5e+02 Score=31.01 Aligned_cols=253 Identities=12% Similarity=0.088 Sum_probs=120.9
Q ss_pred CCcceEEEecCCCeeeeecC------------eeecccCCCCeEEEe--ccCceeEEEeCCCcEEEEeCCCCCCcCCCCC
Q 038610 46 GSRNSLAICDDGKTKTENIP------------SQVNALSNTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPE 111 (374)
Q Consensus 46 g~~~~~~l~~~g~~~~~~~p------------~~~~~~~~~~i~~i~--~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~ 111 (374)
-.+-.++|+.+|...-.... ..+..-.+..+..+. ....+.+++|+.|++|..-...--..+....
T Consensus 497 ~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~ 576 (805)
T PRK05560 497 EEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTAR 576 (805)
T ss_pred CCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCC
Confidence 45566777777772222110 111112333455443 4466689999999999987553222111111
Q ss_pred CCCCCcceeecccccccccCCCCcEEEEEeCC-----CeEEEEecCCcEEEecCC-CCCCCccCcccceEeeCCCCeeEE
Q 038610 112 RKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG-----THSVVLTREGHVWTWGQP-WPPGDIKQISVPVRVQGLEQVKLI 185 (374)
Q Consensus 112 ~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p~~i~~~~~i~~i 185 (374)
.. ++..-..+...++|+.+.+-. ...+++|++|.+--.-.. +.... ..-..-..+.....+..+
T Consensus 577 G~---------~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~-r~G~~~ikLke~D~lv~v 646 (805)
T PRK05560 577 GR---------PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIR-SNGIIAINLDEGDELIGV 646 (805)
T ss_pred Ce---------EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcc-cCCceeeccCCCCEEEEE
Confidence 00 111111234567777777654 356788888876654322 00000 000001111122344444
Q ss_pred EE--CCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeecc-CCCCcEEEEEecC---CeEEEEecCCCEEEEeCC
Q 038610 186 AV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG-LSGLTLVDIAAGG---WHSTALTDDGEVYGWGRG 259 (374)
Q Consensus 186 ~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~-~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n 259 (374)
.. ...+.+++|++|++|.+-...--..+.... ..++.. ..+++|+.+.+.. .+.+++|+.|.+.-.--.
T Consensus 647 ~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 647 RLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred EEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence 33 345689999999999886544322222111 111111 2346677665543 256778888866544322
Q ss_pred CCCCCCCCCCCCCccccceEeecCC-CCcEEEE--EccCCeEEEEecCCCEEEEeCCCCCccC
Q 038610 260 EHGRLGFGDNDKSSKMVPQKVNLLA-GEDIVQV--SCGGTHSVALTRDGHIFSFGRGDHGRLG 319 (374)
Q Consensus 260 ~~gqlG~~~~~~~~~~~p~~v~~~~-~~~i~~i--~~G~~~~~~lt~~g~vy~~G~n~~gqLG 319 (374)
++-....+. .. -..+.... +..++.+ ..+.+..+++|.+|++.-+-.++--..|
T Consensus 722 e~~~~~R~~--kG----~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~~g 778 (805)
T PRK05560 722 EYRLQGRGG--KG----VITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISITG 778 (805)
T ss_pred HhhccCCCC--Cc----EEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCccc
Confidence 221111100 00 00111111 1233332 3355568888889988877765443333
No 39
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=68.29 E-value=1e+02 Score=28.62 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=12.5
Q ss_pred eEEEEecCCcEEEecCC
Q 038610 145 HSVVLTREGHVWTWGQP 161 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~ 161 (374)
|+++...+++||++|-.
T Consensus 132 ~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 132 HVAVSLHNGKAYITGGV 148 (376)
T ss_pred eEEEEeeCCEEEEECCC
Confidence 55555468999999875
No 40
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=67.48 E-value=1.8e+02 Score=31.03 Aligned_cols=134 Identities=10% Similarity=-0.034 Sum_probs=70.0
Q ss_pred CCCCeEEEec--cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccC-CCCcEEEEEeCCC----
Q 038610 72 SNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA-PKLIVRQVAAGGT---- 144 (374)
Q Consensus 72 ~~~~i~~i~~--G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~-~~~~i~~i~~g~~---- 144 (374)
.+..+..+.. ..++.+++|+.|++|.--...--........ .+....++. +. ..++|..+.+-.+
T Consensus 550 e~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G-------~~I~nll~~-~~~~~EkIv~i~~~~ef~~~ 621 (957)
T PRK13979 550 EGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKG-------ERLDEIIKG-IDLESEKIIEAYSIEDFTPQ 621 (957)
T ss_pred CCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCC-------eEHHHhhhc-cCCCCCeEEEEEEeccCCCC
Confidence 3444555554 4556788999999998754332111111100 000111110 11 3667777776543
Q ss_pred -eEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECC-----ceEEEEecCCcEEEEecCCCCCCCC
Q 038610 145 -HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA-----FHNLALQEDGALWAWGNNEYGQLGT 214 (374)
Q Consensus 145 -~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~n~~gqlG~ 214 (374)
+.+++|++|.+.-.-... .........-..+.....+..+.... .+.++++++|.+.-+-.+.--.+|.
T Consensus 622 ~~lv~~Tk~G~VKrt~L~e-f~~~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 622 KDFIFITDSGGIKKTSLDK-FVTNYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred CEEEEEECCCeEEEEehhh-ccccccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 468889999887765431 01111111222233335565554432 3578889999888776655444443
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.68 E-value=83 Score=27.81 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=71.5
Q ss_pred cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CCeEEEEecCCcEEEe
Q 038610 82 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHSVVLTREGHVWTW 158 (374)
Q Consensus 82 G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~~~lt~~g~v~~~ 158 (374)
+.-|-++...||.||--+.. .|.+|+-+... .+++.+..| .-|.+++..+|..|++
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~t--------------------Gev~~ypLg~Ga~Phgiv~gpdg~~Wit 120 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPAT--------------------GEVETYPLGSGASPHGIVVGPDGSAWIT 120 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCCC--------------------CceEEEecCCCCCCceEEECCCCCeeEe
Confidence 35577788899999865433 35556544332 223333332 3366666777777776
Q ss_pred cCCC-----C--CCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCC-CCCCCCCCCCCCccceeeccCC
Q 038610 159 GQPW-----P--PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNE-YGQLGTGDTQPRSQPIPVQGLS 230 (374)
Q Consensus 159 G~~~-----~--~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~-~gqlG~~~~~~~~~p~~~~~~~ 230 (374)
-..+ . ....+..+.| .+.+-+.-.+.+++..|+||..|.+- +|.|--........|.+
T Consensus 121 d~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----- 186 (353)
T COG4257 121 DTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----- 186 (353)
T ss_pred cCcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----
Confidence 5441 1 1111222222 22333455678999999999998742 34332111111111111
Q ss_pred CCcEEEEEecCCeEEEEecCCCEEEE
Q 038610 231 GLTLVDIAAGGWHSTALTDDGEVYGW 256 (374)
Q Consensus 231 ~~~i~~i~~G~~~~~~lt~~g~vy~w 256 (374)
.-+.-.-++.|-+|+||.-
T Consensus 187 -------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 -------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred -------CCCCCcceEECCCCcEEEE
Confidence 1244566788999999976
No 42
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=64.17 E-value=1.7e+02 Score=31.10 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=24.7
Q ss_pred CCCcEEEEEeCCCe--EEEEecCCcEEEecCC
Q 038610 132 PKLIVRQVAAGGTH--SVVLTREGHVWTWGQP 161 (374)
Q Consensus 132 ~~~~i~~i~~g~~~--~~~lt~~g~v~~~G~~ 161 (374)
....|.+|+..... .++++.+|.|+.|-..
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 37789999998888 7999999988777644
No 43
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=62.78 E-value=22 Score=18.99 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=20.2
Q ss_pred CcEEEEEecCCeEEEEecCCCEEE
Q 038610 232 LTLVDIAAGGWHSTALTDDGEVYG 255 (374)
Q Consensus 232 ~~i~~i~~G~~~~~~lt~~g~vy~ 255 (374)
+.|..|++|....++.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 678999999999999998876543
No 44
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=61.83 E-value=1.3e+02 Score=27.68 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=28.8
Q ss_pred ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEE
Q 038610 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256 (374)
Q Consensus 190 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~w 256 (374)
.+.++.+.+|.||++-... |++- . -.++... .....-+..+ .+.++.+.+|+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~-------~-~~~~~~~-~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFV-------A-RLKTDGS-GIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEE-------E-EEEcCCC-ccccCCEEEC-CEEEEEeCCceEEEe
Confidence 4666778889999885322 2210 0 0000000 0001112233 567788899999986
No 45
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=59.11 E-value=13 Score=21.68 Aligned_cols=19 Identities=16% Similarity=0.407 Sum_probs=15.7
Q ss_pred ceEEEEecCCcEEEEecCC
Q 038610 190 FHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 190 ~~~~~l~~~g~v~~~G~n~ 208 (374)
-+.++++.+|.||+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3568999999999999754
No 46
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=58.80 E-value=1.6e+02 Score=27.75 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=38.6
Q ss_pred eeCCCCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEE-EecCCeEEEEecCCC
Q 038610 176 VQGLEQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDI-AAGGWHSTALTDDGE 252 (374)
Q Consensus 176 i~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i-~~G~~~~~~lt~~g~ 252 (374)
+....+|.+|+.. ..+.++++.+|++|..-. ++.+. .....+. .....+++ -||.+ ++++.-...
T Consensus 213 i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss-Df~~~--------~~e~~~~--~~~~p~~~~WCG~d-av~l~~~~~ 280 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS-DFSEK--------LCEFDTD--SKSPPKQMAWCGND-AVVLSWEDE 280 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECCCCEEEEEC-cccce--------eEEeecC--cCCCCcEEEEECCC-cEEEEeCCE
Confidence 3344678888776 456777888899988532 32211 1011111 11223333 46665 444444667
Q ss_pred EEEEeC
Q 038610 253 VYGWGR 258 (374)
Q Consensus 253 vy~wG~ 258 (374)
|+..|.
T Consensus 281 l~lvg~ 286 (410)
T PF04841_consen 281 LLLVGP 286 (410)
T ss_pred EEEECC
Confidence 888884
No 47
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=58.58 E-value=2.4e+02 Score=29.49 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=81.7
Q ss_pred eCCCeEEEEecCCcEEEecCC-CCCCCccCcccc----eEeeCCCCeeEEEEC-----CceEEEEecCCcEEEEecCCCC
Q 038610 141 AGGTHSVVLTREGHVWTWGQP-WPPGDIKQISVP----VRVQGLEQVKLIAVG-----AFHNLALQEDGALWAWGNNEYG 210 (374)
Q Consensus 141 ~g~~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p----~~i~~~~~i~~i~~g-----~~~~~~l~~~g~v~~~G~n~~g 210 (374)
...++.+++|+.|++|..-.. .........-.| ..+...++|+.+.+- ....+++|.+|.+--.-.+.+-
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~ 623 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFS 623 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhh
Confidence 345567888999999998433 111111111111 123334667666552 2356778888877665433321
Q ss_pred CCCCCCCCCCccceeeccCCCCcEEEEEec--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcE
Q 038610 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288 (374)
Q Consensus 211 qlG~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i 288 (374)
.... .....+..-.+..++.+... ..+.+++|++|++|..=-.+.-..|.... .. ..+.+..+.+|
T Consensus 624 ~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~--Gv----~~i~L~~~E~V 691 (800)
T TIGR01063 624 NIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR--GV----RGIKLKNEDFV 691 (800)
T ss_pred hhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC--Ce----ecccCCCCCEE
Confidence 1100 00000110112445544333 34688999999999887655444443221 10 01333345667
Q ss_pred EEEEcc--CCeEEEEecCCCEEEEe
Q 038610 289 VQVSCG--GTHSVALTRDGHIFSFG 311 (374)
Q Consensus 289 ~~i~~G--~~~~~~lt~~g~vy~~G 311 (374)
+.+.+- ..+.+++|++|.+.-.=
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEE
Confidence 666543 33577788888665553
No 48
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=57.48 E-value=1.3e+02 Score=26.10 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCeeEEEECCceEEEEecCCcEEEEecCCCCC-CCCCCCCCCccceee
Q 038610 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ-LGTGDTQPRSQPIPV 226 (374)
Q Consensus 180 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gq-lG~~~~~~~~~p~~~ 226 (374)
.+|-.++.-+.| ++.-.+|.||+|-+++.-. ++....-....|.+.
T Consensus 63 gpiy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 63 GPIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCeeeeeeehhh-eeeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 456666666555 3344669999999998765 444443333444444
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.14 E-value=1.3e+02 Score=26.09 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=53.9
Q ss_pred EecCCcEEEecCCCCCCCccCcccceEeeCC----CCeeEEE-ECCceEEEEecCCcEEEEecCCCCCCCCCCC-CCCcc
Q 038610 149 LTREGHVWTWGQPWPPGDIKQISVPVRVQGL----EQVKLIA-VGAFHNLALQEDGALWAWGNNEYGQLGTGDT-QPRSQ 222 (374)
Q Consensus 149 lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~----~~i~~i~-~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~-~~~~~ 222 (374)
+..||++...|-............|...... +....++ .-++-+..+..||+|++.|-...--...-.. .....
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~ 153 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG 153 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCC
Confidence 4468888888866332222222223221111 1222233 3578888999999999998544100000000 00111
Q ss_pred ceeeccCCCCcEE-EEEecCCeEEEEecCCCEEEEeCCC
Q 038610 223 PIPVQGLSGLTLV-DIAAGGWHSTALTDDGEVYGWGRGE 260 (374)
Q Consensus 223 p~~~~~~~~~~i~-~i~~G~~~~~~lt~~g~vy~wG~n~ 260 (374)
+..++.+. ... ......+=.+.|..+|+||.|+.+.
T Consensus 154 ~~~~~~l~--~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 154 PVTLPFLS--QTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ceeeecch--hhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 11111111 111 1223445567888899999999763
No 50
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=56.39 E-value=3e+02 Score=29.94 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCcEEEEEeCCCe-EEEEe--cCCcEEEecCCCCCCC-ccCcccceEeeCCCCeeEEE-ECCceEEEE-ecCCcEEEEec
Q 038610 133 KLIVRQVAAGGTH-SVVLT--REGHVWTWGQPWPPGD-IKQISVPVRVQGLEQVKLIA-VGAFHNLAL-QEDGALWAWGN 206 (374)
Q Consensus 133 ~~~i~~i~~g~~~-~~~lt--~~g~v~~~G~~~~~~~-~~~~~~p~~i~~~~~i~~i~-~g~~~~~~l-~~~g~v~~~G~ 206 (374)
...+.+++....| +++++ +||.|-+|-...-.+. .......+.......+.++. |++.+.+++ ++||.|-..+-
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence 4455577777777 66665 6899999977622222 11111222222334555554 444444443 78899888876
Q ss_pred CCCCCCCCCCCCCCccceee--ccCC-CCcEEEEEecCC-----eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccce
Q 038610 207 NEYGQLGTGDTQPRSQPIPV--QGLS-GLTLVDIAAGGW-----HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ 278 (374)
Q Consensus 207 n~~gqlG~~~~~~~~~p~~~--~~~~-~~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~ 278 (374)
+.+. .....+... +... ...++++.+-.. -.++.|..+.+..|+-...-. ..+
T Consensus 1128 d~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~------------~w~ 1188 (1431)
T KOG1240|consen 1128 DHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD------------AWR 1188 (1431)
T ss_pred cccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh------------HHh
Confidence 6541 111111111 1111 123444433221 235678888899998432111 011
Q ss_pred EeecCCCCcEEEEEccCCeEEEE--ecCCCEEEEeC
Q 038610 279 KVNLLAGEDIVQVSCGGTHSVAL--TRDGHIFSFGR 312 (374)
Q Consensus 279 ~v~~~~~~~i~~i~~G~~~~~~l--t~~g~vy~~G~ 312 (374)
.-..+...-|.+|+.....+.++ |..|.+-+|--
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEe
Confidence 11112234566666555444433 45677777764
No 51
>PHA03098 kelch-like protein; Provisional
Probab=55.14 E-value=1.2e+02 Score=29.63 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=11.5
Q ss_pred ceeEEEeCCCcEEEEeCC
Q 038610 84 WHCLAVDDQGRAYAWGGN 101 (374)
Q Consensus 84 ~~~~~lt~~g~v~~wG~n 101 (374)
.|+++. -+|+||.+|-.
T Consensus 335 ~~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGI 351 (534)
T ss_pred cceEEE-ECCEEEEEeCC
Confidence 344443 47899999954
No 52
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=53.78 E-value=2.6e+02 Score=28.44 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=57.6
Q ss_pred EeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEe
Q 038610 79 AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158 (374)
Q Consensus 79 i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 158 (374)
++.|..|=+++ +||.|-.|..+.- .++ ..+|..++...+-++++|.-++-..+
T Consensus 138 vSVGsQHDMIV----nv~dWr~N~~~as---------------------nki--ss~Vsav~fsEdgSYfvT~gnrHvk~ 190 (1080)
T KOG1408|consen 138 VSVGSQHDMIV----NVNDWRVNSSGAS---------------------NKI--SSVVSAVAFSEDGSYFVTSGNRHVKL 190 (1080)
T ss_pred EeeccccceEE----Ehhhhhhcccccc---------------------ccc--ceeEEEEEEccCCceeeeeeeeeEEE
Confidence 34566666666 4777877754321 011 45677777777777887766543332
Q ss_pred cCCCCCCCccCcccceEeeCC---------CCeeEEEECCc----eEEEEecCCcEEEEe
Q 038610 159 GQPWPPGDIKQISVPVRVQGL---------EQVKLIAVGAF----HNLALQEDGALWAWG 205 (374)
Q Consensus 159 G~~~~~~~~~~~~~p~~i~~~---------~~i~~i~~g~~----~~~~l~~~g~v~~~G 205 (374)
+.. ..+. ....|.++... .....|+||.. .+++|+..|.+.-+-
T Consensus 191 wyl-~~~~--KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 191 WYL-QIQS--KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred EEe-eccc--cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 222 1111 22223333221 45788999977 999999999887764
No 53
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=53.24 E-value=2.7e+02 Score=28.63 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=79.6
Q ss_pred cCCcceEEEecCCCeeee----ecCeeecccCCCCeEEEecc--CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcc
Q 038610 45 AGSRNSLAICDDGKTKTE----NIPSQVNALSNTKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGR 118 (374)
Q Consensus 45 ~g~~~~~~l~~~g~~~~~----~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~ 118 (374)
.-+...++++.+|-..-. ..+..+..-.+..++.+..+ ..+.+++|++|++|.+..+.-= .|.+...
T Consensus 492 ~~e~v~VilTk~G~IKr~~~~~~~~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~aGg------ 564 (735)
T TIGR01062 492 PKEPVTIILSKMGWVRSAKGHDIDLSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-SARGQGE------ 564 (735)
T ss_pred cCcceEEEEecCCEEEeccccccchhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-cCccCCc------
Confidence 345667777887772111 11223333344556666544 4458999999999999765431 1211110
Q ss_pred eeecccccccccCCCCcEEEEEeCCC--eEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEE--EECC-ceEE
Q 038610 119 ILRRDIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLI--AVGA-FHNL 193 (374)
Q Consensus 119 ~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i--~~g~-~~~~ 193 (374)
+...-..+.....|+.+.+... +.+++|+.|..+..-...-......-..-..+.....+..+ ..+. .+.+
T Consensus 565 ----pV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~d~lv~v~~v~~~dd~V~ 640 (735)
T TIGR01062 565 ----PLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVIAPLPVNGDSDMIA 640 (735)
T ss_pred ----eeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCCCEEEEEEEEcCCCCEEE
Confidence 1111112244667777776543 47788888876665432000000000000011111222221 1233 3577
Q ss_pred EEecCCcEEEEecCCCCCCC
Q 038610 194 ALQEDGALWAWGNNEYGQLG 213 (374)
Q Consensus 194 ~l~~~g~v~~~G~n~~gqlG 213 (374)
+++++|++..+-.++.-+++
T Consensus 641 liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 641 AITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEeCCCcEEEEEHHHCCccC
Confidence 89999999988766544443
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.85 E-value=2e+02 Score=26.96 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=39.8
Q ss_pred cCCCCcEEEEEeCCCeEEEEe--cCCcEEEecCCCCCCCccCcccceEeeCC----CCeeEEEECCceEEEE--ecCCcE
Q 038610 130 CAPKLIVRQVAAGGTHSVVLT--REGHVWTWGQPWPPGDIKQISVPVRVQGL----EQVKLIAVGAFHNLAL--QEDGAL 201 (374)
Q Consensus 130 ~~~~~~i~~i~~g~~~~~~lt--~~g~v~~~G~~~~~~~~~~~~~p~~i~~~----~~i~~i~~g~~~~~~l--~~~g~v 201 (374)
+....+|..++...+.-++|. .+.++..|..- ....+.+..+- --|..-..|.+..++. .+|++|
T Consensus 392 ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 392 ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred ccccCceeEEEEcCCCcEEEEEcccCeeEEeecc-------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 344667777766655444443 46777777643 11111111111 1255666677756665 578999
Q ss_pred EEEecC
Q 038610 202 WAWGNN 207 (374)
Q Consensus 202 ~~~G~n 207 (374)
|.|-.-
T Consensus 465 yIWhr~ 470 (519)
T KOG0293|consen 465 YIWHRI 470 (519)
T ss_pred EEEEcc
Confidence 999653
No 55
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=52.23 E-value=2.3e+02 Score=27.38 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=28.7
Q ss_pred cEEEEEeCCCe-EEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEE
Q 038610 135 IVRQVAAGGTH-SVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWA 203 (374)
Q Consensus 135 ~i~~i~~g~~~-~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~ 203 (374)
.|..+..+.+- .+-=+++|.+++|+.. .. ++. +.+. +.-|.-+++++..+|.+..
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~----~~-------~~~--k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKG----TN-------RIS--KQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCC----Cc-------eEE--eEee-ecCCceEEEEEecCccEee
Confidence 34444444332 3333567889999874 00 010 1122 3446666677777777666
No 56
>PLN02153 epithiospecifier protein
Probab=52.09 E-value=1.9e+02 Score=26.37 Aligned_cols=18 Identities=22% Similarity=0.685 Sum_probs=12.4
Q ss_pred CceEEEEecCCcEEEEecC
Q 038610 189 AFHNLALQEDGALWAWGNN 207 (374)
Q Consensus 189 ~~~~~~l~~~g~v~~~G~n 207 (374)
..|++++ .++++|++|--
T Consensus 129 ~~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeeEEEE-ECCEEEEECCc
Confidence 3566655 56789999853
No 57
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=51.25 E-value=2.8e+02 Score=28.17 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=39.4
Q ss_pred ceEEEecCCcceEEEecCCC-------------eeeeecCee---ecccCCCCeEEEeccCc----eeEEEeCCCcEEEE
Q 038610 39 KVRSVVAGSRNSLAICDDGK-------------TKTENIPSQ---VNALSNTKIVQAAIGGW----HCLAVDDQGRAYAW 98 (374)
Q Consensus 39 ~i~~v~~g~~~~~~l~~~g~-------------~~~~~~p~~---~~~~~~~~i~~i~~G~~----~~~~lt~~g~v~~w 98 (374)
.|..|+..++.+++++.-.+ ..+.+.|.+ +..+.+..+..|+||.. .+++||..|.|.-|
T Consensus 167 ~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 167 VVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred eEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 45556666666666665544 112222222 12234556889999988 89999999999877
Q ss_pred eC
Q 038610 99 GG 100 (374)
Q Consensus 99 G~ 100 (374)
.+
T Consensus 247 Ss 248 (1080)
T KOG1408|consen 247 SS 248 (1080)
T ss_pred ch
Confidence 53
No 58
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=50.88 E-value=1.9e+02 Score=26.07 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=12.1
Q ss_pred ceEEEEecCCcEEEEecCC
Q 038610 190 FHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 190 ~~~~~l~~~g~v~~~G~n~ 208 (374)
.|++++ .+++||++|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455544 568999998643
No 59
>PRK05560 DNA gyrase subunit A; Validated
Probab=49.28 E-value=3.3e+02 Score=28.45 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=81.9
Q ss_pred EeCCCeEEEEecCCcEEEecCC-CCCCCccCcccc----eEeeCCCCeeEEEECC-----ceEEEEecCCcEEEEecCCC
Q 038610 140 AAGGTHSVVLTREGHVWTWGQP-WPPGDIKQISVP----VRVQGLEQVKLIAVGA-----FHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 140 ~~g~~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p----~~i~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~n~~ 209 (374)
+...+..+++|+.|++|..-.. .........-.| ..+...++|+.+.+-. ...++++.+|.+--.-...+
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~ 624 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEF 624 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHh
Confidence 3445667889999999997543 111111111111 1233336677766643 35678889987765543332
Q ss_pred CCCCCCCCCCCccceeeccCCCCcEEEEEec--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCc
Q 038610 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGED 287 (374)
Q Consensus 210 gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~ 287 (374)
-....+ ....+..-.+..++.+... ..+.+++|++|++|.+=-.+--..|.... . . ..+.+..+.+
T Consensus 625 ~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~--G---v-~~i~L~~~E~ 692 (805)
T PRK05560 625 SNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR--G---V-RGIKLREGDE 692 (805)
T ss_pred hhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC--C---c-ccccCCCCCE
Confidence 111100 0111111123455554433 34688999999999886554433332221 0 0 0122233456
Q ss_pred EEEEEccC---CeEEEEecCCCEEEE
Q 038610 288 IVQVSCGG---THSVALTRDGHIFSF 310 (374)
Q Consensus 288 i~~i~~G~---~~~~~lt~~g~vy~~ 310 (374)
|+.+.+.. .+.+++|+.|.+.-.
T Consensus 693 Vv~~~~v~~~~~~il~vTk~G~iKr~ 718 (805)
T PRK05560 693 VVSMDVVREDSQEILTVTENGYGKRT 718 (805)
T ss_pred EEEEEEEcCCCcEEEEEEeCCeEEEE
Confidence 66665543 257778888865544
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=47.05 E-value=1.5e+02 Score=26.64 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.6
Q ss_pred CCeEEEEecCCCEEEEe
Q 038610 241 GWHSTALTDDGEVYGWG 257 (374)
Q Consensus 241 ~~~~~~lt~~g~vy~wG 257 (374)
..+.+++-+|+.+||+-
T Consensus 449 GewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFS 465 (508)
T ss_pred CcEEEEEccCcEEEEEE
Confidence 45677777888888876
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.58 E-value=2.5e+02 Score=26.32 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=42.8
Q ss_pred CcEEEEEecCCeEEEEe--cCCCEEEEeCCCCCCCCCCCCCCCccccceEeecC--CCCcEEEEEccCCeEEEEe--cCC
Q 038610 232 LTLVDIAAGGWHSTALT--DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL--AGEDIVQVSCGGTHSVALT--RDG 305 (374)
Q Consensus 232 ~~i~~i~~G~~~~~~lt--~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~~~~~lt--~~g 305 (374)
.+|..++...+.-++|. .+.++..|--- ....+.+...- ..--|.+.+.|.+..++.. +|+
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~-------------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLE-------------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecc-------------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 56777777666555543 56789999842 11122222111 1123677788877777775 889
Q ss_pred CEEEEeCCC
Q 038610 306 HIFSFGRGD 314 (374)
Q Consensus 306 ~vy~~G~n~ 314 (374)
+||.|-.-.
T Consensus 463 kvyIWhr~s 471 (519)
T KOG0293|consen 463 KVYIWHRIS 471 (519)
T ss_pred eEEEEEccC
Confidence 999998743
No 62
>PHA02790 Kelch-like protein; Provisional
Probab=45.79 E-value=25 Score=34.03 Aligned_cols=15 Identities=7% Similarity=0.253 Sum_probs=11.0
Q ss_pred EEEecCCcEEEEecC
Q 038610 193 LALQEDGALWAWGNN 207 (374)
Q Consensus 193 ~~l~~~g~v~~~G~n 207 (374)
.+..-+|+||+.|-.
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344567999999863
No 63
>PHA02713 hypothetical protein; Provisional
Probab=45.39 E-value=75 Score=31.43 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=13.6
Q ss_pred cCceeEEEeCCCcEEEEeCC
Q 038610 82 GGWHCLAVDDQGRAYAWGGN 101 (374)
Q Consensus 82 G~~~~~~lt~~g~v~~wG~n 101 (374)
.+.+..+..-+|+||.+|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444455568999999954
No 64
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.74 E-value=1.3e+02 Score=32.53 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=52.7
Q ss_pred EEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecC-----CeEEEEecCCCEEEEeCCC-CCCCCC
Q 038610 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG-----WHSTALTDDGEVYGWGRGE-HGRLGF 266 (374)
Q Consensus 193 ~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~-----~~~~~lt~~g~vy~wG~n~-~gqlG~ 266 (374)
+-++.|+++|.|-.+..+++-.-+...... .+ ...++...|- .|.++|...-+|+..|--. ..+.+.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtI-l~------V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTI-LK------VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhh-ee------eeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 457889999999988766553322111110 00 1122222222 4889999888999999321 111111
Q ss_pred CCCCCCccccceEeecCCCCcEEEEEc-cCCeEEEE-ecCCCEEEEeCCCC
Q 038610 267 GDNDKSSKMVPQKVNLLAGEDIVQVSC-GGTHSVAL-TRDGHIFSFGRGDH 315 (374)
Q Consensus 267 ~~~~~~~~~~p~~v~~~~~~~i~~i~~-G~~~~~~l-t~~g~vy~~G~n~~ 315 (374)
.. + ....+|.. |-+-.++. +++|+||.-|.+.+
T Consensus 166 ~~--------------f--~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~ 200 (1311)
T KOG1900|consen 166 SI--------------F--NTSFKISVDGVSVNCITYTENGRIFFAGRDGN 200 (1311)
T ss_pred cc--------------c--ccceeeecCCceEEEEEeccCCcEEEeecCCC
Confidence 11 1 01134444 44444444 67888888776653
No 65
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=44.12 E-value=2.8e+02 Score=26.17 Aligned_cols=194 Identities=15% Similarity=0.202 Sum_probs=91.7
Q ss_pred CCeEEEec-cCceeEEEeCCCcEEEEeCCCCCCc--CCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEe
Q 038610 74 TKIVQAAI-GGWHCLAVDDQGRAYAWGGNEYGQC--GEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT 150 (374)
Q Consensus 74 ~~i~~i~~-G~~~~~~lt~~g~v~~wG~n~~gql--g~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt 150 (374)
.+|+.+.- -..+.++|+++|.++..- -+|.. ..+.. .... .+ ...++-.+..+.+-.++||
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~~fsl~~~------------i~~~-~v-~e~~i~~~~~~~~GivvLt 144 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEFQFSLGEE------------IEEE-KV-LECRIFAIWFYKNGIVVLT 144 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCceeechhhh------------cccc-Cc-ccccccccccCCCCEEEEC
Confidence 46777663 456889999999877653 22332 11110 0000 00 0223334455656688899
Q ss_pred cCCcEEEecCCCCCCCccC-cccceEee---CC---CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccc
Q 038610 151 REGHVWTWGQPWPPGDIKQ-ISVPVRVQ---GL---EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~-~~~p~~i~---~~---~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
.++++|.--.......... ...|.... .. ..+..+......-+.+..++.++..-.+...+
T Consensus 145 ~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------------ 212 (410)
T PF04841_consen 145 GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------------ 212 (410)
T ss_pred CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------------
Confidence 9999998743311101010 11222111 11 12212222222223333344555443322111
Q ss_pred eeeccCCCCcEEEEEec--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecC-CCCcEEEEEccCCeEEE
Q 038610 224 IPVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL-AGEDIVQVSCGGTHSVA 300 (374)
Q Consensus 224 ~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~-~~~~i~~i~~G~~~~~~ 300 (374)
+.. ..+|.+|+.. ..+.++++.+|.+|+.=......+ ..+... ......-..||.+ +++
T Consensus 213 --i~~--~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~-------------~e~~~~~~~~p~~~~WCG~d-av~ 274 (410)
T PF04841_consen 213 --IDS--DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL-------------CEFDTDSKSPPKQMAWCGND-AVV 274 (410)
T ss_pred --ccC--CCCeEEEEECCCCCEEEEEECCCCEEEEECccccee-------------EEeecCcCCCCcEEEEECCC-cEE
Confidence 211 1467777766 346777888999998643221111 111111 1123344577765 555
Q ss_pred EecCCCEEEEeCC
Q 038610 301 LTRDGHIFSFGRG 313 (374)
Q Consensus 301 lt~~g~vy~~G~n 313 (374)
+.-...|+..|..
T Consensus 275 l~~~~~l~lvg~~ 287 (410)
T PF04841_consen 275 LSWEDELLLVGPD 287 (410)
T ss_pred EEeCCEEEEECCC
Confidence 5556678888843
No 66
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=43.64 E-value=24 Score=21.41 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=11.8
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|+++...+++||++|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 468888887789999984
No 67
>PHA02790 Kelch-like protein; Provisional
Probab=42.65 E-value=71 Score=30.88 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=9.8
Q ss_pred EecCCcEEEEecC
Q 038610 195 LQEDGALWAWGNN 207 (374)
Q Consensus 195 l~~~g~v~~~G~n 207 (374)
..-+|+||+.|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 3467899999853
No 68
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=42.31 E-value=81 Score=31.31 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=49.3
Q ss_pred eEEEEecCCcEEEecCCCCCCC-ccCcccceEee-CCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCcc
Q 038610 145 HSVVLTREGHVWTWGQPWPPGD-IKQISVPVRVQ-GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~~~~~~-~~~~~~p~~i~-~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 222 (374)
...+..-+|+||+.|-..+... ........+.. ....+..+.-...+.-+..-+++||+.|-... +.....
T Consensus 420 ~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~------ 492 (571)
T KOG4441|consen 420 GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSS------ 492 (571)
T ss_pred eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccce------
Confidence 3344556899999997533221 11111000000 00112222222333335567789999995442 110100
Q ss_pred ceeeccCCCCcEEE---EEecCCeEEEEecCCCEEEEeC
Q 038610 223 PIPVQGLSGLTLVD---IAAGGWHSTALTDDGEVYGWGR 258 (374)
Q Consensus 223 p~~~~~~~~~~i~~---i~~G~~~~~~lt~~g~vy~wG~ 258 (374)
.+.-.+...+.+. +.....+.-+..-++++|+-|-
T Consensus 493 -VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 493 -VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred -EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 1111111123332 3345556666777889999985
No 69
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=40.38 E-value=3.5e+02 Score=26.18 Aligned_cols=129 Identities=11% Similarity=0.058 Sum_probs=69.3
Q ss_pred ceEEEecCCcceEEEecCCCeeeeecCeeecccCCCCeEEEeccCc-eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCc
Q 038610 39 KVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTG 117 (374)
Q Consensus 39 ~i~~v~~g~~~~~~l~~~g~~~~~~~p~~~~~~~~~~i~~i~~G~~-~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~ 117 (374)
.=.-|.||..|.++.+..+.......-..-...+ .-|..+.-+.+ -.+--+++|.++.|+...+
T Consensus 213 ~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-------------- 277 (626)
T KOG2106|consen 213 PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTN-------------- 277 (626)
T ss_pred CcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCc--------------
Confidence 4456789999999998877743333322211112 33555554433 3444567789999985211
Q ss_pred ceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC-CCeeEEEECCceE
Q 038610 118 RILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL-EQVKLIAVGAFHN 192 (374)
Q Consensus 118 ~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~-~~i~~i~~g~~~~ 192 (374)
. -.+...+.-|.-+++++..+|.|..=|.. ....+ .....++.++.. ..|+-|+-|..-.
T Consensus 278 -------~-------~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di 342 (626)
T KOG2106|consen 278 -------R-------ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDI 342 (626)
T ss_pred -------e-------EEeEeeecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcE
Confidence 0 01122255677788888888888872222 11112 222223333332 5677777766553
Q ss_pred EEEec
Q 038610 193 LALQE 197 (374)
Q Consensus 193 ~~l~~ 197 (374)
++=|.
T Consensus 343 ~vGTt 347 (626)
T KOG2106|consen 343 LVGTT 347 (626)
T ss_pred EEeec
Confidence 33333
No 70
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=39.32 E-value=48 Score=23.06 Aligned_cols=43 Identities=30% Similarity=0.535 Sum_probs=29.6
Q ss_pred ccceEeecCCCCcEEEEEcc-CCeEEEEecCCCEEEEeCCCCCccC
Q 038610 275 MVPQKVNLLAGEDIVQVSCG-GTHSVALTRDGHIFSFGRGDHGRLG 319 (374)
Q Consensus 275 ~~p~~v~~~~~~~i~~i~~G-~~~~~~lt~~g~vy~~G~n~~gqLG 319 (374)
..|..+.. +..-..|+|. ....++|+.||.+|+-|--+.|++=
T Consensus 7 t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 7 THPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp E--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred cccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 34555544 3456789999 8889999999999999976677763
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.48 E-value=3.5e+02 Score=25.61 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=38.2
Q ss_pred CeEEEEecCCcEEEecCCCCCCCccCcccceEeeCC----CCeeEEEECCceEEEE--ecCCcEEEEec
Q 038610 144 THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGL----EQVKLIAVGAFHNLAL--QEDGALWAWGN 206 (374)
Q Consensus 144 ~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~----~~i~~i~~g~~~~~~l--~~~g~v~~~G~ 206 (374)
.+++++-.||-+|.-|...+.-.+.....+..+..+ .+|+.|+.+.+-.... .+++.|.+|--
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 466777788888888876322222222233322222 6799998876644443 46777999964
No 72
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.22 E-value=86 Score=21.84 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=28.8
Q ss_pred cceEeeCCCCeeEEEEC-CceEEEEecCCcEEEEecCCCCCC
Q 038610 172 VPVRVQGLEQVKLIAVG-AFHNLALQEDGALWAWGNNEYGQL 212 (374)
Q Consensus 172 ~p~~i~~~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n~~gql 212 (374)
.|..+.....=..|+|. ....++|+.||.+|+-+--+.|.+
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 45566555566788999 888999999999999987666654
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=36.49 E-value=1.4e+02 Score=27.68 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=44.6
Q ss_pred CeEEEeccCce---eEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEec
Q 038610 75 KIVQAAIGGWH---CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTR 151 (374)
Q Consensus 75 ~i~~i~~G~~~---~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~ 151 (374)
.+..+.++.++ .+++..+|++.-|..+..-. ++ .....+.+|..=....+|++.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~--------------------l~---~~~~~~~DIi~~kGkfYAvD~ 217 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKA--------------------LK---QMGYHFSDIIVHKGQTYALDS 217 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeeeE--------------------cc---CCCceeeEEEEECCEEEEEcC
Confidence 45556677775 67777889998886433221 11 135678899988888999999
Q ss_pred CCcEEEecC
Q 038610 152 EGHVWTWGQ 160 (374)
Q Consensus 152 ~g~v~~~G~ 160 (374)
.|+||.+..
T Consensus 218 ~G~l~~i~~ 226 (373)
T PLN03215 218 IGIVYWINS 226 (373)
T ss_pred CCeEEEEec
Confidence 999999763
No 74
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=35.48 E-value=1.6e+02 Score=27.32 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=41.6
Q ss_pred cEEEEEecCCe---EEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEE
Q 038610 233 TLVDIAAGGWH---STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFS 309 (374)
Q Consensus 233 ~i~~i~~G~~~---~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~ 309 (374)
.+..+.+++++ .+++..+|++..|-.+.. +.++. ....+.+|..=....+|++..|+||+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W----------------t~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL----------------KALKQ-MGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee----------------eEccC-CCceeeEEEEECCEEEEEcCCCeEEE
Confidence 34446777775 677788899988974322 12221 23567777777777888887888888
Q ss_pred Ee
Q 038610 310 FG 311 (374)
Q Consensus 310 ~G 311 (374)
+-
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 76
No 75
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=34.63 E-value=5.7e+02 Score=26.95 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=82.2
Q ss_pred CeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEe-cCC
Q 038610 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLT-REG 153 (374)
Q Consensus 75 ~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt-~~g 153 (374)
+...++++. +.++..+++++++|.-. |.+-..+ |. ..+.|..+.|-.......+ ..+
T Consensus 171 r~~~v~a~~--v~imR~Nnr~lf~G~t~-G~V~LrD----------------~~---s~~~iht~~aHs~siSDfDv~GN 228 (1118)
T KOG1275|consen 171 RTTNVSASG--VTIMRYNNRNLFCGDTR-GTVFLRD----------------PN---SFETIHTFDAHSGSISDFDVQGN 228 (1118)
T ss_pred eeeeccCCc--eEEEEecCcEEEeeccc-ceEEeec----------------CC---cCceeeeeeccccceeeeeccCC
Confidence 455666655 67777888999998643 2221111 11 1334555555443333333 345
Q ss_pred cEEEecCCCCCCC-------------ccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCC---CCCCCC
Q 038610 154 HVWTWGQPWPPGD-------------IKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQ---LGTGDT 217 (374)
Q Consensus 154 ~v~~~G~~~~~~~-------------~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gq---lG~~~~ 217 (374)
.|..||....... .-....|.+++....+.++.-.....++++. +.|...+++ ++..
T Consensus 229 lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S-----~sGq~q~vd~~~lsNP-- 301 (1118)
T KOG1275|consen 229 LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTS-----QSGQFQFVDTATLSNP-- 301 (1118)
T ss_pred eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEe-----cccceeeccccccCCC--
Confidence 5677776521111 1122234444444455555555544555532 233332222 1111
Q ss_pred CCCccceeeccCCC--CcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCC
Q 038610 218 QPRSQPIPVQGLSG--LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG 267 (374)
Q Consensus 218 ~~~~~p~~~~~~~~--~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~ 267 (374)
..-+....+.+ ..--+|++..+..++.+.+|.|-.|-++..+|....
T Consensus 302 ---~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~ 350 (1118)
T KOG1275|consen 302 ---PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEY 350 (1118)
T ss_pred ---ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCC
Confidence 11111111111 234467788888888889999999999888887543
No 76
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=33.47 E-value=79 Score=16.66 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=12.5
Q ss_pred eEEEEecCCCEEEEeCC
Q 038610 297 HSVALTRDGHIFSFGRG 313 (374)
Q Consensus 297 ~~~~lt~~g~vy~~G~n 313 (374)
|.+++..+|+||+.=.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56777788888887654
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=33.02 E-value=3.4e+02 Score=23.77 Aligned_cols=67 Identities=10% Similarity=0.250 Sum_probs=36.0
Q ss_pred eccCCCce-EEEecCCcceEEEecCCC--------eeeeecCeeecccCCCCeEEEe-ccCceeEEE-eCCCcEEEEeC
Q 038610 33 KALEPYKV-RSVVAGSRNSLAICDDGK--------TKTENIPSQVNALSNTKIVQAA-IGGWHCLAV-DDQGRAYAWGG 100 (374)
Q Consensus 33 ~~~~~~~i-~~v~~g~~~~~~l~~~g~--------~~~~~~p~~~~~~~~~~i~~i~-~G~~~~~~l-t~~g~v~~wG~ 100 (374)
..+....| +.++..++.-.+|+...+ ..+..-|+++..... .|+.+- |-.+|+++- ++++.|--|-.
T Consensus 95 hsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 95 HSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEe
Confidence 33444444 344444444444444333 333444555555444 355544 777787776 67788888864
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=31.01 E-value=3.1e+02 Score=22.80 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=69.6
Q ss_pred CeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC--CeEEEEe
Q 038610 75 KIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG--THSVVLT 150 (374)
Q Consensus 75 ~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~--~~~~~lt 150 (374)
+|..++... ...++...+|.++.|-....... ... ......+..+.... .+.++..
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~---~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----------------RTL---KGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----------------EEE---ecCCcceeEEEECCCCCEEEEEc
Confidence 466665444 44555556899998864432100 000 00122233333332 3455556
Q ss_pred cCCcEEEecCCCCCCCccCcccceEeeCC-CCeeEEEECCc-eEEEEec-CCcEEEEecCCCCCCCCCCCCCCccceeec
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPVRVQGL-EQVKLIAVGAF-HNLALQE-DGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~~i~~~-~~i~~i~~g~~-~~~~l~~-~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~ 227 (374)
.+|.|+.|-.... .....+... ..|..+..... ..++... +|.|+.|-...... ...+.
T Consensus 71 ~~~~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~ 132 (289)
T cd00200 71 SDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------LTTLR 132 (289)
T ss_pred CCCeEEEEEcCcc-------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------EEEec
Confidence 6899998876411 111122221 35666655443 3344444 78888886432110 01111
Q ss_pred cCCCCcEEEEEecCC-eEEEEec-CCCEEEEeCC
Q 038610 228 GLSGLTLVDIAAGGW-HSTALTD-DGEVYGWGRG 259 (374)
Q Consensus 228 ~~~~~~i~~i~~G~~-~~~~lt~-~g~vy~wG~n 259 (374)
.....|..+..... ..++... +|.|+.|-..
T Consensus 133 -~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 133 -GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred -cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 11134666655542 3333333 8888888653
No 79
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=30.36 E-value=3.7e+02 Score=23.43 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=22.1
Q ss_pred CcEEEEEecCCeEEEEecCCCEEEEeCCCCCC-CCC
Q 038610 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGR-LGF 266 (374)
Q Consensus 232 ~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gq-lG~ 266 (374)
.+|-+++.-+.| ++.--+|.||+|=+|+.-. ++.
T Consensus 63 gpiy~~~f~d~~-Lls~gdG~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 63 GPIYYLAFHDDF-LLSGGDGLVYGWEWNEEEESLAT 97 (325)
T ss_pred CCeeeeeeehhh-eeeccCceEEEeeehhhhhhccc
Confidence 356666655443 4445579999999988755 443
No 80
>PLN02153 epithiospecifier protein
Probab=29.99 E-value=4.2e+02 Score=24.01 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=11.7
Q ss_pred CeEEEEecCCcEEEecCC
Q 038610 144 THSVVLTREGHVWTWGQP 161 (374)
Q Consensus 144 ~~~~~lt~~g~v~~~G~~ 161 (374)
.|++++ -+++||++|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 455544 46789999875
No 81
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=29.61 E-value=3.5e+02 Score=22.98 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=12.1
Q ss_pred CeEEEEecCCCEEEEe
Q 038610 242 WHSTALTDDGEVYGWG 257 (374)
Q Consensus 242 ~~~~~lt~~g~vy~wG 257 (374)
--.++++.+|+||+..
T Consensus 186 pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEEBTTS-EEEEE
T ss_pred CCcceEcCCCCEEEEE
Confidence 4578899999999874
No 82
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=28.96 E-value=2.9e+02 Score=23.71 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=26.2
Q ss_pred CCeEEEEecCCcEEEecCCCCCCCccCcccceEe--eCCCCeeEEEECCce-EEEEecCCcEEEE
Q 038610 143 GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRV--QGLEQVKLIAVGAFH-NLALQEDGALWAW 204 (374)
Q Consensus 143 ~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i--~~~~~i~~i~~g~~~-~~~l~~~g~v~~~ 204 (374)
.-..++++.+|+||-+-........-.....+.| ........|.++.+- ..+++.+|++|-+
T Consensus 91 ~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 91 TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE-EEEE
T ss_pred CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCCceEEe
Confidence 3445566666666554332111111111133444 223556666666554 4556666666654
No 83
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=28.92 E-value=3.8e+02 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=13.0
Q ss_pred EEEEEeCCCe-EEEEecCCcEEEe
Q 038610 136 VRQVAAGGTH-SVVLTREGHVWTW 158 (374)
Q Consensus 136 i~~i~~g~~~-~~~lt~~g~v~~~ 158 (374)
...|.++.+- .++++.+|++|.+
T Consensus 132 f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 132 FDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp EEEEEE-TTS-EEEEETTE-EEEE
T ss_pred ceEEEeCCCccEEEEcCCCceEEe
Confidence 5555555544 5667777777765
No 84
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=28.26 E-value=2.6e+02 Score=21.00 Aligned_cols=65 Identities=15% Similarity=0.063 Sum_probs=40.4
Q ss_pred EEEEEeCCCeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEE
Q 038610 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAW 204 (374)
Q Consensus 136 i~~i~~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~ 204 (374)
.+++-|-..+.+.+..+|.|-.-+.. .+.........+.. ..|.--.+-....++++..|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~---~~~~s~~~i~~~~~-g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDD---NSPYSVFEIHSVGF-GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESST---TSTTGEEEEEEEET-TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCc---CcceeEEEEEeccc-eEEEEEEecceEEEEECCCCeEccc
Confidence 56778887888999999999887654 11111122222222 2232223345677999999999985
No 85
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.75 E-value=4.7e+02 Score=24.30 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCceEEEecCCc-ce-EEEecCCCeeee----ecCeeecccCCCCeEEEeccCc-eeEEEeCCCcEEEEeCCCCCCcCCC
Q 038610 37 PYKVRSVVAGSR-NS-LAICDDGKTKTE----NIPSQVNALSNTKIVQAAIGGW-HCLAVDDQGRAYAWGGNEYGQCGEE 109 (374)
Q Consensus 37 ~~~i~~v~~g~~-~~-~~l~~~g~~~~~----~~p~~~~~~~~~~i~~i~~G~~-~~~~lt~~g~v~~wG~n~~gqlg~~ 109 (374)
..-+..|..+.. |. ...+.||+.... ..-..+.......+..|..|.. +.++++.||+...-+....+++-.-
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEe
Confidence 334555555443 33 334566662111 1123444555667888888765 6788899998555444334444432
Q ss_pred CCCCCCCcceeeccccccccc----CCCCcEEEEEeCC---CeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCe
Q 038610 110 PERKDDTGRILRRDIVIPQRC----APKLIVRQVAAGG---THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQV 182 (374)
Q Consensus 110 ~~~~~~~~~~~~~~~~~p~~~----~~~~~i~~i~~g~---~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i 182 (374)
+...... ...+|..- ....++..|.+.. .+.+.+.+.+++|.--.. +. .+ ..+
T Consensus 106 D~~tle~------v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~----d~----~~------~~~ 165 (369)
T PF02239_consen 106 DAETLEP------VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS----DP----KN------LKV 165 (369)
T ss_dssp ETTT--E------EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT----TS----SC------EEE
T ss_pred ccccccc------eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec----cc----cc------cce
Confidence 2221110 01111110 0245666665432 256677788999875432 10 11 123
Q ss_pred eEEEECC-ceEEEEecCCcEEEEecCCC
Q 038610 183 KLIAVGA-FHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 183 ~~i~~g~-~~~~~l~~~g~v~~~G~n~~ 209 (374)
+.+.++. -|=..++.+|+-|.-+.+..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred eeecccccccccccCcccceeeeccccc
Confidence 3444433 35567777777665555443
No 86
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=27.62 E-value=6.4e+02 Score=25.35 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=37.6
Q ss_pred CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEc---cCCeEEEEecCCCEEEEeCCCCCc
Q 038610 241 GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC---GGTHSVALTRDGHIFSFGRGDHGR 317 (374)
Q Consensus 241 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~---G~~~~~~lt~~g~vy~~G~n~~gq 317 (374)
.+..+|++..|.||+|---. ......+.+++ ..++-++. -....++.+.++++|.+-- +.-|
T Consensus 487 G~yiaa~~t~g~I~v~nl~~----------~~~~~l~~rln----~~vTa~~~~~~~~~~lvvats~nQv~efdi-~~~~ 551 (691)
T KOG2048|consen 487 GNYIAAISTRGQIFVYNLET----------LESHLLKVRLN----IDVTAAAFSPFVRNRLVVATSNNQVFEFDI-EARN 551 (691)
T ss_pred CCEEEEEeccceEEEEEccc----------ceeecchhccC----cceeeeeccccccCcEEEEecCCeEEEEec-chhh
Confidence 35667777899999997421 11111221222 23332222 2345567788999999987 3344
Q ss_pred cCCCCCC
Q 038610 318 LGYGRKV 324 (374)
Q Consensus 318 LG~g~~~ 324 (374)
|+.=...
T Consensus 552 l~~ws~~ 558 (691)
T KOG2048|consen 552 LTRWSKN 558 (691)
T ss_pred hhhhhhc
Confidence 5543333
No 87
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.54 E-value=8.2e+02 Score=26.19 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=33.1
Q ss_pred eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCC
Q 038610 243 HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRG 313 (374)
Q Consensus 243 ~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n 313 (374)
+.+.|+.+|++|+=+. .+ ..++.+......|.++.|.+-.+...=-+
T Consensus 593 ~~~GLs~~~~Ly~n~~--------------------~l----a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYANSR--------------------LL----ASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEECCE--------------------EE----ecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 5777888899986110 11 15778888888888888887777766554
No 88
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=26.44 E-value=8.3e+02 Score=26.23 Aligned_cols=163 Identities=8% Similarity=0.050 Sum_probs=82.9
Q ss_pred cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEE--EeCCCeEEEEecCCcEEEec
Q 038610 82 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV--AAGGTHSVVLTREGHVWTWG 159 (374)
Q Consensus 82 G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i--~~g~~~~~~lt~~g~v~~~G 159 (374)
-..-.+.||.+|-+-.--...+..-+.+... ........+..+ +...++.+++|+.|++|..-
T Consensus 515 ~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~---------------~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ik 579 (957)
T PRK13979 515 VEDVVITLSNEGFIKRIPLKSYNRSNSNVED---------------IEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIK 579 (957)
T ss_pred CcceEEEEecCCEEEEccccccccccccccc---------------cccCCCCceEEEEEEcCCCEEEEEECCCeEEEEE
Confidence 3556778888886655443333211111100 000112334443 33456678899999999865
Q ss_pred CC-CCCCCc----cCcccceE-ee-CCCCeeEEEECC-----ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeec
Q 038610 160 QP-WPPGDI----KQISVPVR-VQ-GLEQVKLIAVGA-----FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227 (374)
Q Consensus 160 ~~-~~~~~~----~~~~~p~~-i~-~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~ 227 (374)
.. ...... ........ +. ..++|..+.+-. .+.+++|++|.|--+=-..+-- . ...-..+.
T Consensus 580 vy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~------~-r~~~~aik 652 (957)
T PRK13979 580 GINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVT------N-YTKLMALK 652 (957)
T ss_pred eeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccc------c-ccceEEEE
Confidence 43 111111 11111110 21 235666666542 2468889999887765433211 1 11112222
Q ss_pred cCCCCcEEEEEecC-----CeEEEEecCCCEEEEeCCCCCCCCC
Q 038610 228 GLSGLTLVDIAAGG-----WHSTALTDDGEVYGWGRGEHGRLGF 266 (374)
Q Consensus 228 ~~~~~~i~~i~~G~-----~~~~~lt~~g~vy~wG~n~~gqlG~ 266 (374)
.-.+..++.+.... .+.+++|++|.+.-+-.++--..|.
T Consensus 653 L~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 653 LKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred cCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 22345676665543 3578899999888777655444443
No 89
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=26.00 E-value=54 Score=24.02 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=18.8
Q ss_pred cCCeEEEEecCCCEEEEeCCCCCC
Q 038610 240 GGWHSTALTDDGEVYGWGRGEHGR 263 (374)
Q Consensus 240 G~~~~~~lt~~g~vy~wG~n~~gq 263 (374)
=+..+-+|-.+|+|.+||+..+.|
T Consensus 78 kDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CCceEEEEEECCEEEEEcHHhhhc
Confidence 355777888899999999876644
No 90
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=25.92 E-value=5.8e+02 Score=24.22 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.6
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|+++.+-+|.||+||-
T Consensus 233 SGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CcceEEecCCCcEEEEcc
Confidence 478899998999999994
No 91
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.22 E-value=1.9e+02 Score=30.60 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=27.6
Q ss_pred ccccceEeecCCCCcEEEE-EccCCeEEEEe--cCCCEEEEeCCCCCccC
Q 038610 273 SKMVPQKVNLLAGEDIVQV-SCGGTHSVALT--RDGHIFSFGRGDHGRLG 319 (374)
Q Consensus 273 ~~~~p~~v~~~~~~~i~~i-~~G~~~~~~lt--~~g~vy~~G~n~~gqLG 319 (374)
....|.++--.-..-|.++ .|..+-.++|+ +|++++||+-|..-+||
T Consensus 241 ~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 241 FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 3344544432112334444 35555445554 78999999999876666
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=24.73 E-value=5.7e+02 Score=23.74 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=14.1
Q ss_pred CCeEEEEecCCCEEEEe
Q 038610 295 GTHSVALTRDGHIFSFG 311 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G 311 (374)
..+.++.+.+|+||++-
T Consensus 376 ~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 376 DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCceEEEEe
Confidence 56888889999999874
No 93
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.47 E-value=1e+02 Score=17.64 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=14.7
Q ss_pred eccCceeEEEeCCCcEEEEe
Q 038610 80 AIGGWHCLAVDDQGRAYAWG 99 (374)
Q Consensus 80 ~~G~~~~~~lt~~g~v~~wG 99 (374)
+....+.++.+.+|+||+.-
T Consensus 18 ~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEE
T ss_pred EEECCEEEEEcCCCEEEEEe
Confidence 55567888888899999874
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.47 E-value=6.2e+02 Score=24.07 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=40.6
Q ss_pred ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEE--ecCCCEEEEeC
Q 038610 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTAL--TDDGEVYGWGR 258 (374)
Q Consensus 190 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~l--t~~g~vy~wG~ 258 (374)
.++.++-.||-+|+.|..+ |++-.-+......-.+.+. ...+|+.|+.+.+-.++. .+|+.|.+|--
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 6777888899999888643 4443333222222222221 225788888887754433 45777999984
No 95
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.30 E-value=8e+02 Score=25.29 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=90.0
Q ss_pred CeEEEeccCce-eEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCC
Q 038610 75 KIVQAAIGGWH-CLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153 (374)
Q Consensus 75 ~i~~i~~G~~~-~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g 153 (374)
+++.+.=...| .++++++|.++.+|.- |.-..... .-.+ ....+|..+..-.+-.++++.+|
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~s---------vg~e---~~~~~I~ec~~f~~GVavlt~~g 147 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-----GEFIESNS---------VGFE---SQMSDIVECRFFHNGVAVLTVSG 147 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-----hhhhcccc---------cccc---cccCceeEEEEecCceEEEecCC
Confidence 45555544445 4667899999988742 11111000 0000 01344555555557788999999
Q ss_pred cEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCc
Q 038610 154 HVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLT 233 (374)
Q Consensus 154 ~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~ 233 (374)
+++.--........+....|.......-.+-+.-+...++.+.-+-.|.-.+ ........++..+... ...
T Consensus 148 ~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~--------~q~~~~~~q~~~~~~~-~~~ 218 (829)
T KOG2280|consen 148 QVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHI--------CQVEESRVQLHALSWP-NSS 218 (829)
T ss_pred cEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcc--------cceecccccccccCCC-Cce
Confidence 9998654411111111111211111111222222333334443331111111 0011111111111111 356
Q ss_pred EEEEEecC--CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEe
Q 038610 234 LVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFG 311 (374)
Q Consensus 234 i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G 311 (374)
+.+|+... .|.+.-|++|+++.--.. ..|.-..-+ ......|. .-..||.. ++++.-...|-..|
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D-~~~~lce~~-~~~~~~p~----------qm~Wcgnd-aVvl~~e~~l~lvg 285 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSID-LSQILCEFN-CTDHDPPK----------QMAWCGND-AVVLSWEVNLMLVG 285 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecc-hhhhhhccC-CCCCCchH----------hceeecCC-ceEEEEeeeEEEEc
Confidence 77777764 466677999999974432 222211110 11111111 23467766 66666666788888
Q ss_pred CC
Q 038610 312 RG 313 (374)
Q Consensus 312 ~n 313 (374)
.+
T Consensus 286 p~ 287 (829)
T KOG2280|consen 286 PP 287 (829)
T ss_pred CC
Confidence 75
No 96
>PF13854 Kelch_5: Kelch motif
Probab=23.61 E-value=87 Score=18.33 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=13.8
Q ss_pred CCeEEEEecCCCEEEEeCCC
Q 038610 295 GTHSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~n~ 314 (374)
..|++++. +++||++|-..
T Consensus 6 ~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 6 YGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred cceEEEEE-CCEEEEEcCcc
Confidence 45777766 47999998644
No 97
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=22.51 E-value=2.7e+02 Score=25.35 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=39.1
Q ss_pred EEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEE--EecCCCEEEEeC
Q 038610 244 STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA--LTRDGHIFSFGR 312 (374)
Q Consensus 244 ~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~--lt~~g~vy~~G~ 312 (374)
.++..+.|+||+|--... .....++......+..|.+.+...+-+++ ..+++.||.|-+
T Consensus 322 la~gnq~g~v~vwdL~~~----------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNN----------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCCC----------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 345567899999984211 22245566666666778888877666654 467888888854
No 98
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.86 E-value=4.6e+02 Score=21.69 Aligned_cols=146 Identities=15% Similarity=0.106 Sum_probs=66.6
Q ss_pred CeEEEeccCc-eeEEEeC-CCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC-CeEEEEe-
Q 038610 75 KIVQAAIGGW-HCLAVDD-QGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG-THSVVLT- 150 (374)
Q Consensus 75 ~i~~i~~G~~-~~~~lt~-~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~-~~~~~lt- 150 (374)
.|..+..... ..++... +|.|+.|-....... .... .....|..+.... ...++..
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------------~~~~---~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----------------TTLR---GHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------------EEec---cCCCcEEEEEEcCcCCEEEEEc
Confidence 4666665443 3444444 888888865421110 0000 1123455555544 2233333
Q ss_pred cCCcEEEecCCCCCCCccCcccceEeeC-CCCeeEEEECCc--eEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeec
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPVRVQG-LEQVKLIAVGAF--HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~~i~~-~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~ 227 (374)
.+|.|+.|-.... .. ...+.. ...|..+....+ ..++...+|.|+.|-..... +....
T Consensus 155 ~~~~i~i~d~~~~----~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------------~~~~~ 215 (289)
T cd00200 155 QDGTIKLWDLRTG----KC---VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK------------CLGTL 215 (289)
T ss_pred CCCcEEEEEcccc----cc---ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc------------eecch
Confidence 3888888865310 00 011111 134555555443 45555557778877543210 00000
Q ss_pred cCCCCcEEEEEecCC-eEEEEe-cCCCEEEEeCC
Q 038610 228 GLSGLTLVDIAAGGW-HSTALT-DDGEVYGWGRG 259 (374)
Q Consensus 228 ~~~~~~i~~i~~G~~-~~~~lt-~~g~vy~wG~n 259 (374)
......+..+....+ ..++.. .+|.|+.|-..
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 011124555555542 223333 38888888643
No 99
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=21.51 E-value=2e+02 Score=24.63 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=41.1
Q ss_pred EEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCC--eEEEEecCCCEEEEeCCC
Q 038610 237 IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT--HSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 237 i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~~G~n~ 314 (374)
|.-+....++.+.+|.||+|=.|.+|++-- .++...+ .-..-|..+.. -.++-..+|+++.|-.-.
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d--------~~~s~~e----~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSD--------RVCSGEE----SIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHH--------hhhcccc----cceeccccccccceeEEeccCCceeeecccc
Confidence 444556777889999999999997776532 1121111 11122334444 233344577888887655
Q ss_pred CCccC
Q 038610 315 HGRLG 319 (374)
Q Consensus 315 ~gqLG 319 (374)
+-.+|
T Consensus 134 ~k~~g 138 (238)
T KOG2444|consen 134 NKVLG 138 (238)
T ss_pred Cceee
Confidence 55555
No 100
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=21.13 E-value=2.2e+02 Score=24.43 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=39.8
Q ss_pred EEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCC--eEEEEecCCcE
Q 038610 78 QAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT--HSVVLTREGHV 155 (374)
Q Consensus 78 ~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~lt~~g~v 155 (374)
.|.-+..-+++.+.+|.||.|=.|.+|++-.....-. ..-..-|..+.. ..++-..+|++
T Consensus 65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~------------------e~i~~~Ip~~~~~~~~c~~~~dg~i 126 (238)
T KOG2444|consen 65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE------------------ESIDLGIPNGRDSSLGCVGAQDGRI 126 (238)
T ss_pred eecccCceEEeecccceEEEecCCccchHHHhhhccc------------------ccceeccccccccceeEEeccCCce
Confidence 4444566678889999999999998877643322110 112233444555 45555667888
Q ss_pred EEecC
Q 038610 156 WTWGQ 160 (374)
Q Consensus 156 ~~~G~ 160 (374)
+.|-.
T Consensus 127 r~~n~ 131 (238)
T KOG2444|consen 127 RACNI 131 (238)
T ss_pred eeecc
Confidence 87754
No 101
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=20.70 E-value=1e+02 Score=17.15 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.5
Q ss_pred cEEEeeCCCCCCcC
Q 038610 6 SIIAWGSGEDGQLG 19 (374)
Q Consensus 6 ~v~~wG~n~~GqLG 19 (374)
.+.+||.|..|.+.
T Consensus 19 slVVWGRnG~g~~~ 32 (33)
T PRK02529 19 AMVVWGRNGDGSID 32 (33)
T ss_pred EEEEEecCCccccC
Confidence 46799999877653
No 102
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=20.24 E-value=1.8e+02 Score=20.35 Aligned_cols=21 Identities=19% Similarity=0.329 Sum_probs=17.9
Q ss_pred CCcEEEEEecCCeEEEEecCC
Q 038610 231 GLTLVDIAAGGWHSTALTDDG 251 (374)
Q Consensus 231 ~~~i~~i~~G~~~~~~lt~~g 251 (374)
+..|+++..|..++++..++|
T Consensus 11 ~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 11 DIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp C-EEEEEEEBSSEEEEEETT-
T ss_pred CCEEEEEEEcCCEEEEEeCCC
Confidence 468999999999999999998
Done!