Query 038610
Match_columns 374
No_of_seqs 290 out of 2104
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 7.4E-70 2.5E-74 506.2 33.3 345 1-369 16-388 (389)
2 1a12_A RCC1, regulator of chro 100.0 1.2E-66 4.2E-71 488.7 39.2 345 1-371 23-412 (413)
3 4d9s_A UVB-resistance protein 100.0 4.2E-66 1.4E-70 483.4 38.2 323 1-335 31-378 (406)
4 3mvd_K Regulator of chromosome 100.0 1.7E-65 5.9E-70 482.7 40.0 343 1-372 39-422 (423)
5 3of7_A Regulator of chromosome 100.0 4.4E-65 1.5E-69 485.3 39.7 350 1-371 25-453 (473)
6 4d9s_A UVB-resistance protein 100.0 1.6E-60 5.6E-65 445.5 36.8 309 37-369 15-348 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 5.2E-57 1.8E-61 419.7 31.2 293 1-305 68-388 (389)
8 3mvd_K Regulator of chromosome 100.0 1.8E-56 6.3E-61 421.2 32.2 307 37-369 23-365 (423)
9 1a12_A RCC1, regulator of chro 100.0 1E-55 3.5E-60 414.6 31.6 302 42-369 12-356 (413)
10 3of7_A Regulator of chromosome 100.0 3.3E-54 1.1E-58 410.5 30.9 295 62-369 53-396 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 7.9E-52 2.7E-56 366.7 29.5 268 5-371 2-275 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.7E-45 5.8E-50 326.1 23.9 211 75-366 25-235 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.7 0.0028 9.5E-08 52.6 6.0 67 74-161 309-375 (400)
14 4gbf_A Phikz131; 7-bladed beta 96.3 0.0096 3.3E-07 49.5 6.7 72 180-264 309-380 (400)
15 1p22_A F-BOX/WD-repeat protein 95.1 1.9 6.4E-05 39.3 30.8 224 39-312 135-363 (435)
16 1p22_A F-BOX/WD-repeat protein 95.1 1.9 6.5E-05 39.3 29.5 236 38-314 174-414 (435)
17 2zwa_A Leucine carboxyl methyl 94.5 1.7 5.7E-05 42.8 17.3 17 296-312 657-673 (695)
18 3no0_A DNA gyrase subunit A; D 93.4 3.3 0.00011 35.4 22.3 218 72-320 22-252 (276)
19 2ovr_B FBW7, F-BOX/WD repeat p 93.1 4.9 0.00017 36.5 33.8 190 73-314 199-391 (445)
20 1k3i_A Galactose oxidase precu 92.2 8.9 0.0003 37.2 19.1 56 145-206 246-305 (656)
21 2zwa_A Leucine carboxyl methyl 89.9 8.4 0.00029 37.8 15.5 62 143-206 441-508 (695)
22 3uc1_A DNA gyrase subunit A; D 89.0 11 0.00039 33.0 21.8 229 73-320 41-285 (327)
23 4aez_A CDC20, WD repeat-contai 84.8 21 0.00071 31.7 23.4 147 76-259 96-247 (401)
24 4aez_A CDC20, WD repeat-contai 84.4 22 0.00074 31.6 26.9 190 73-314 176-380 (401)
25 3ii7_A Kelch-like protein 7; p 83.2 20 0.0007 30.4 13.1 17 295-312 239-255 (306)
26 2ovr_B FBW7, F-BOX/WD repeat p 82.9 26 0.00091 31.5 33.5 188 74-314 160-348 (445)
27 1suu_A DNA gyrase subunit A; t 81.1 27 0.00091 30.3 23.6 228 72-317 45-286 (312)
28 3odt_A Protein DOA1; ubiquitin 81.1 23 0.00079 29.6 27.9 184 73-313 104-295 (313)
29 3mmy_A MRNA export factor; mRN 81.1 26 0.00087 30.1 25.2 193 73-313 86-303 (368)
30 1suu_A DNA gyrase subunit A; t 80.2 29 0.00098 30.1 23.1 215 83-321 8-238 (312)
31 1sq9_A Antiviral protein SKI8; 79.6 31 0.0011 30.1 18.7 211 73-314 16-267 (397)
32 2vpj_A Kelch-like protein 12; 77.1 4.5 0.00015 34.6 6.3 17 295-312 245-261 (301)
33 4asc_A Kelch repeat and BTB do 74.7 7.4 0.00025 33.5 7.1 18 189-207 140-157 (315)
34 2aq5_A Coronin-1A; WD40 repeat 73.5 48 0.0016 29.2 29.1 153 79-258 40-205 (402)
35 1gxr_A ESG1, transducin-like e 73.5 40 0.0014 28.4 31.8 181 75-310 143-333 (337)
36 1yfq_A Cell cycle arrest prote 73.3 42 0.0014 28.5 22.3 202 74-315 12-226 (342)
37 3k26_A Polycomb protein EED; W 72.7 45 0.0015 28.5 24.2 160 74-260 70-260 (366)
38 3l6v_A GYRA, DNA gyrase subuni 71.2 56 0.0019 29.1 23.4 134 70-213 42-185 (370)
39 3uc1_A DNA gyrase subunit A; D 70.3 55 0.0019 28.6 18.3 161 139-311 49-225 (327)
40 1wp5_A Topoisomerase IV; broke 69.9 55 0.0019 28.4 25.2 232 72-321 37-284 (323)
41 1zi0_A DNA gyrase subunit A; b 68.3 58 0.002 28.1 24.9 228 73-319 41-282 (307)
42 3no0_A DNA gyrase subunit A; D 66.8 58 0.002 27.5 19.7 198 46-265 34-251 (276)
43 3v7d_B Cell division control p 66.5 73 0.0025 28.6 28.5 258 2-310 180-458 (464)
44 3i2n_A WD repeat-containing pr 66.4 60 0.0021 27.6 21.8 150 133-313 65-242 (357)
45 3zwl_B Eukaryotic translation 66.2 61 0.0021 27.6 22.9 158 75-259 34-205 (369)
46 2pm9_A Protein WEB1, protein t 65.8 69 0.0024 28.0 24.7 199 74-315 114-338 (416)
47 2xn4_A Kelch-like protein 2; s 65.3 2.1 7.2E-05 36.8 1.4 17 296-313 244-260 (302)
48 3jro_A Fusion protein of prote 64.9 1.1E+02 0.0037 30.0 23.3 201 74-314 54-285 (753)
49 1gxr_A ESG1, transducin-like e 64.6 62 0.0021 27.1 34.8 258 2-314 18-296 (337)
50 1k3i_A Galactose oxidase precu 60.6 1.2E+02 0.0041 29.1 18.7 73 189-263 457-534 (656)
51 3jrp_A Fusion protein of prote 60.2 81 0.0028 26.9 28.7 199 74-313 56-286 (379)
52 3p6j_A De novo designed beta-t 60.1 52 0.0018 24.7 12.2 109 72-204 28-139 (142)
53 2woz_A Kelch repeat and BTB do 59.4 82 0.0028 26.7 11.1 16 242-258 151-166 (318)
54 4a11_B DNA excision repair pro 58.6 90 0.0031 27.0 26.8 194 85-317 158-368 (408)
55 4asc_A Kelch repeat and BTB do 58.6 57 0.002 27.7 9.5 17 295-312 188-204 (315)
56 2vpj_A Kelch-like protein 12; 57.7 43 0.0015 28.2 8.5 18 83-101 104-121 (301)
57 2xyi_A Probable histone-bindin 57.6 1E+02 0.0036 27.4 21.2 209 75-313 183-409 (430)
58 3i2n_A WD repeat-containing pr 57.3 88 0.003 26.4 25.2 194 73-313 65-290 (357)
59 1xip_A Nucleoporin NUP159; bet 56.7 1.1E+02 0.0038 27.4 13.3 98 136-256 90-187 (388)
60 2pm9_A Protein WEB1, protein t 56.7 1E+02 0.0034 26.9 22.1 201 74-313 68-293 (416)
61 1zvt_A Topoisomerase IV subuni 56.6 86 0.0029 26.1 11.3 133 71-214 30-169 (256)
62 3sfz_A APAF-1, apoptotic pepti 56.6 1.9E+02 0.0064 30.0 22.3 141 145-312 1099-1247(1249)
63 3odt_A Protein DOA1; ubiquitin 56.1 85 0.0029 25.9 28.6 187 75-313 61-254 (313)
64 1zgk_A Kelch-like ECH-associat 55.9 14 0.00048 31.6 5.0 17 83-100 113-129 (308)
65 3vl1_A 26S proteasome regulato 55.8 1.1E+02 0.0036 26.9 26.9 98 145-259 261-364 (420)
66 3ii7_A Kelch-like protein 7; p 54.1 97 0.0033 26.0 12.6 17 295-312 192-208 (306)
67 1r5m_A SIR4-interacting protei 53.6 1.1E+02 0.0038 26.5 29.5 137 84-259 218-360 (425)
68 3jrp_A Fusion protein of prote 53.3 1.1E+02 0.0036 26.2 23.0 197 75-314 13-240 (379)
69 3no2_A Uncharacterized protein 52.7 1E+02 0.0034 25.7 28.6 79 232-320 176-267 (276)
70 3p6j_A De novo designed beta-t 48.1 85 0.0029 23.5 13.3 106 133-255 29-138 (142)
71 3mkq_A Coatomer beta'-subunit; 46.9 2.1E+02 0.0072 27.8 24.8 189 75-314 57-259 (814)
72 4gga_A P55CDC, cell division c 45.0 1.6E+02 0.0056 25.9 25.3 191 74-312 190-393 (420)
73 1zi0_A DNA gyrase subunit A; b 45.0 1.5E+02 0.005 25.4 21.1 160 139-310 49-222 (307)
74 3mkq_A Coatomer beta'-subunit; 43.8 2.3E+02 0.008 27.4 24.7 188 75-313 15-216 (814)
75 1sq9_A Antiviral protein SKI8; 43.2 1.6E+02 0.0055 25.3 27.3 108 134-259 187-321 (397)
76 2xyi_A Probable histone-bindin 43.2 1.8E+02 0.0061 25.8 24.9 148 145-314 196-353 (430)
77 2uvk_A YJHT; unknown function, 42.5 79 0.0027 27.3 7.9 17 295-312 110-126 (357)
78 3mmy_A MRNA export factor; mRN 41.9 1.6E+02 0.0053 24.8 24.5 192 73-314 39-247 (368)
79 3jro_A Fusion protein of prote 41.2 2.6E+02 0.0089 27.2 22.6 197 75-314 11-238 (753)
80 1yfq_A Cell cycle arrest prote 37.2 1.8E+02 0.0062 24.2 28.3 206 74-313 57-281 (342)
81 4g56_B MGC81050 protein; prote 36.4 2.1E+02 0.0071 24.6 31.6 189 74-314 140-343 (357)
82 3q7m_A Lipoprotein YFGL, BAMB; 36.3 2.1E+02 0.0071 24.6 14.3 16 295-310 359-374 (376)
83 4a11_B DNA excision repair pro 35.3 2.1E+02 0.0073 24.5 28.4 215 72-314 42-276 (408)
84 3k26_A Polycomb protein EED; W 34.2 2.1E+02 0.0071 24.0 28.2 214 73-312 115-364 (366)
85 1xip_A Nucleoporin NUP159; bet 32.1 2.7E+02 0.0093 24.7 16.7 65 181-258 89-153 (388)
86 1zvu_A Topoisomerase IV subuni 30.5 3.9E+02 0.013 26.0 12.7 122 80-214 511-639 (716)
87 3no2_A Uncharacterized protein 29.6 2.4E+02 0.0082 23.3 18.6 24 35-58 85-109 (276)
88 4e54_B DNA damage-binding prot 29.2 3E+02 0.01 24.3 18.4 27 74-100 120-149 (435)
89 4g56_B MGC81050 protein; prote 28.2 2.8E+02 0.0097 23.7 23.0 111 134-258 95-211 (357)
90 1zvu_A Topoisomerase IV subuni 27.9 4.3E+02 0.015 25.7 12.2 121 140-266 511-639 (716)
91 3ei3_B DNA damage-binding prot 27.7 2.9E+02 0.0098 23.6 22.6 110 75-208 165-282 (383)
92 1zvt_A Topoisomerase IV subuni 27.6 2.6E+02 0.0089 23.1 16.0 121 139-266 40-169 (256)
93 3ei3_B DNA damage-binding prot 26.1 3.1E+02 0.011 23.4 20.6 191 74-314 74-282 (383)
94 3e5z_A Putative gluconolactona 24.9 2.9E+02 0.0098 22.6 11.6 15 243-257 221-235 (296)
95 2aq5_A Coronin-1A; WD40 repeat 23.5 3.6E+02 0.012 23.3 25.4 114 73-206 81-205 (402)
96 4e54_B DNA damage-binding prot 23.1 3.9E+02 0.013 23.5 20.0 72 133-207 250-326 (435)
97 3zwl_B Eukaryotic translation 22.6 3.4E+02 0.011 22.6 26.6 66 135-206 177-247 (369)
98 3l6v_A GYRA, DNA gyrase subuni 21.6 4.2E+02 0.014 23.3 19.1 121 139-265 53-185 (370)
99 3f3f_A Nucleoporin SEH1; struc 20.3 3.6E+02 0.012 22.0 23.0 205 77-310 17-245 (351)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.4e-70 Score=506.19 Aligned_cols=345 Identities=32% Similarity=0.593 Sum_probs=298.7
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCC----------------eeeeec
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----------------TKTENI 64 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~----------------~~~~~~ 64 (374)
|+++|+||+||.|.+||||.+..+....|.++..+...++++|+||..|+++|+++|+ ......
T Consensus 16 l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~ 95 (389)
T 3kci_A 16 FQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVST 95 (389)
T ss_dssp -----CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEE
T ss_pred ECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccC
Confidence 6789999999999999999999988999999999888899999999999999999999 234467
Q ss_pred CeeecccCCCC--eEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccC--CCCcEEEEE
Q 038610 65 PSQVNALSNTK--IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVA 140 (374)
Q Consensus 65 p~~~~~~~~~~--i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~--~~~~i~~i~ 140 (374)
|..+..+.+.. +++|+||.+|+++|+++|+||+||.|.+||||.+... ....|..+. ...+|++|+
T Consensus 96 p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~----------~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS----------PCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp EEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC----------CEEEEEECGGGTTSCEEEEE
T ss_pred CEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc----------cCcCCeEecccCCCeEEEEE
Confidence 77777776654 4788999999999999999999999999999998764 233444443 256899999
Q ss_pred eCCCeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC--CCeeEEEECC--ceEEEEecCCcEEEEecCCCCCC
Q 038610 141 AGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQL 212 (374)
Q Consensus 141 ~g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~--~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gql 212 (374)
||..|+++|+++|+||+||.+ ++.+.......|.+++.+ .+|++|+||. .|+++|+++|+||+||.|.+|||
T Consensus 166 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 166 AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp ECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 999999999999999999998 455566666778888766 5799999995 89999999999999999999999
Q ss_pred CCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEE
Q 038610 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292 (374)
Q Consensus 213 G~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~ 292 (374)
|.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......|.++..+.+.+|++|+
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~P~~v~~l~~~~v~~ia 323 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--DDHVRRPRQVQGLQGKKVIAIA 323 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--CccccCCeEeccCCCCCEEEEE
Confidence 99998888899999988888899999999999999999999999999999999998 6777899999988888999999
Q ss_pred ccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 293 ~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
||.+|+++|+++|+||+||.|.+||||+|.......|++++.. .+.+|++|+||.+||+||++.+
T Consensus 324 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~------------~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 324 TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL------------QGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG------------TTSCCCEEEEETTEEEEECC--
T ss_pred eccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEeccc------------CCCCEEEEEecCCcEEEEecCC
Confidence 9999999999999999999999999999998877666665321 1335899999999999998764
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.2e-66 Score=488.70 Aligned_cols=345 Identities=28% Similarity=0.495 Sum_probs=290.3
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCCcc-eeeeEEeeccCCCceEEEecCCcceEEEecCCCe------------------ee
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNNEE-REWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------------------KT 61 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~------------------~~ 61 (374)
|+++|+||+||.|.+||||++.... ...|.++.. ..+|++|+||..|+++|+++|+. ..
T Consensus 23 l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 100 (413)
T 1a12_A 23 STEPGLVLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS 100 (413)
T ss_dssp CCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred ecCCCcEEEEECCCCCcCCCCCCccccccceEccC--CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCcc
Confidence 6789999999999999999998754 678888875 36899999999999999999981 12
Q ss_pred eecCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEeC--CCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEE
Q 038610 62 ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139 (374)
Q Consensus 62 ~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~--n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i 139 (374)
...|..+... .+|++|+||.+|+++|+++|+||+||. |.+||||.+.... ....|.++....+|++|
T Consensus 101 ~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~---------~~~~P~~v~~~~~i~~i 169 (413)
T 1a12_A 101 EMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK---------KSMVPVQVQLDVPVVKV 169 (413)
T ss_dssp GGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB---------CEEEEEEECCSSCEEEE
T ss_pred ccCCeEecCC--CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccc---------cccCCEEecCCCCEEEE
Confidence 3467777442 379999999999999999999999999 9999999876532 22346666667899999
Q ss_pred EeCCCeEEEEecCCcEEEecCCC----CCCCc-----------cCcccceEeeC-------CCCeeEEEECCceEEEEec
Q 038610 140 AAGGTHSVVLTREGHVWTWGQPW----PPGDI-----------KQISVPVRVQG-------LEQVKLIAVGAFHNLALQE 197 (374)
Q Consensus 140 ~~g~~~~~~lt~~g~v~~~G~~~----~~~~~-----------~~~~~p~~i~~-------~~~i~~i~~g~~~~~~l~~ 197 (374)
+||..|+++|+++|+||+||.+. +.... .....|..+.. ..+|++|+||.+|+++|++
T Consensus 170 a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~ 249 (413)
T 1a12_A 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH 249 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET
T ss_pred EecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeC
Confidence 99999999999999999999982 22111 01245655543 3679999999999999999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCccceeeccCCC--CcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccc
Q 038610 198 DGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG--LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKM 275 (374)
Q Consensus 198 ~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~--~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~ 275 (374)
+|+||+||.|.+||||.+.......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....
T Consensus 250 ~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~ 328 (413)
T 1a12_A 250 EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG-AEEKS 328 (413)
T ss_dssp TCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT-CCCEE
T ss_pred CCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCC-Ccccc
Confidence 9999999999999999998888889999988765 57999999999999999999999999999999999853 55678
Q ss_pred cceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEE
Q 038610 276 VPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLV 355 (374)
Q Consensus 276 ~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v 355 (374)
.|++++.+. +|++|+||.+|+++|+++|+||+||.|.+||||.|...+...|++++.. ...+.+|++|
T Consensus 329 ~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~----------~~~~~~v~~v 396 (413)
T 1a12_A 329 IPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK----------QLENRVVLSV 396 (413)
T ss_dssp EEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCST----------TTTTEEEEEE
T ss_pred CCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEcccc----------ccCCCeEEEE
Confidence 899988764 8999999999999999999999999999999999998766666555421 1124579999
Q ss_pred eeCCCceEEEEeeccc
Q 038610 356 ACGGRHTLAIVEWQTE 371 (374)
Q Consensus 356 ~~G~~ht~~l~~~~~~ 371 (374)
+||.+||++|+++.+.
T Consensus 397 ~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 397 SSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp EECSSEEEEEEEECSC
T ss_pred eeCCCcEEEEEecCCC
Confidence 9999999999987753
No 3
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.2e-66 Score=483.36 Aligned_cols=323 Identities=34% Similarity=0.630 Sum_probs=289.7
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCC-C----------------eeeee
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG-K----------------TKTEN 63 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g-~----------------~~~~~ 63 (374)
|+++|+||+||.|.+||||.+...+...|.++..+...+|++|+||.+|+++|++++ + .....
T Consensus 31 l~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~ 110 (406)
T 4d9s_A 31 LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLF 110 (406)
T ss_dssp EETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEE
T ss_pred EEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccc
Confidence 578999999999999999999999999999999999899999999999999999986 5 23345
Q ss_pred cCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccC--CCCcEEEEEe
Q 038610 64 IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVAA 141 (374)
Q Consensus 64 ~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~--~~~~i~~i~~ 141 (374)
.|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+. ...+|++|+|
T Consensus 111 ~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~----------~~~p~~v~~~~~~~i~~va~ 180 (406)
T 4d9s_A 111 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED----------SLVPQKIQAFEGIRIKMVAA 180 (406)
T ss_dssp EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC----------EEEEEECGGGTTCCEEEEEE
T ss_pred cceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC----------cccceEecccCCCcEEEEec
Confidence 77888888888999999999999999999999999999999999987652 33454443 3568999999
Q ss_pred CCCeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC--CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCC
Q 038610 142 GGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215 (374)
Q Consensus 142 g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~--~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~ 215 (374)
|.+|+++|+++|+||+||.+ ++.+.......|.++..+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 181 G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g 260 (406)
T 4d9s_A 181 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 260 (406)
T ss_dssp CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSS
T ss_pred CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCC
Confidence 99999999999999999988 444555566678887766 689999999999999999999999999999999999
Q ss_pred CCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccC
Q 038610 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG 295 (374)
Q Consensus 216 ~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~ 295 (374)
+......|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.+. ......|.++..+...+|++|+||.
T Consensus 261 ~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~p~~v~~~~~~~v~~va~G~ 338 (406)
T 4d9s_A 261 DLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--NLDQCSPVQVRFPDDQKVVQVSCGW 338 (406)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--SSCEEEEEEECCGGGCCEEEEEECS
T ss_pred CCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--CCCCccCEEEeccCCCcEEEEEeCC
Confidence 99888999999988888899999999999999999999999999999999988 6677889999887778999999999
Q ss_pred CeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeee
Q 038610 296 THSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPIN 335 (374)
Q Consensus 296 ~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~ 335 (374)
+|+++|+++|+||+||+|.+||||+|+..+...|+.++..
T Consensus 339 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l 378 (406)
T 4d9s_A 339 RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378 (406)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred CeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeee
Confidence 9999999999999999999999999999888777776543
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-65 Score=482.74 Aligned_cols=343 Identities=26% Similarity=0.415 Sum_probs=285.1
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCC-cceeeeEEeeccCCCceEEEecCCcceEEEecCCCe------------------ee
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNN-EEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKT------------------KT 61 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~------------------~~ 61 (374)
|+++|+||+||.|.+||||.+.. .....|.++..+. .|++|+||..|+++|+++|+. ..
T Consensus 39 l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 116 (423)
T 3mvd_K 39 RTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116 (423)
T ss_dssp CCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTS
T ss_pred ecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcc
Confidence 68899999999999999999975 4567888887765 689999999999999999981 12
Q ss_pred eecCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEeC--CCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEE
Q 038610 62 ENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQV 139 (374)
Q Consensus 62 ~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~--n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i 139 (374)
...|..+... .+|++|+||.+|+++|+++|+||+||. |.+||||.+... ....|..+....+|++|
T Consensus 117 ~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~----------~~~~p~~~~~~~~i~~v 184 (423)
T 3mvd_K 117 ESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG----------NKRTPIDLMEGTVCCSI 184 (423)
T ss_dssp SSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB----------CEEEEEESSTTCCEEEE
T ss_pred ccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC----------CCceeeEecCCCcEEEE
Confidence 4567766643 379999999999999999999999999 999999998764 33566666678899999
Q ss_pred EeCCCeEEEEecCCcEEEecCC----CCCCC-----------ccCcccceEeeCC--CCeeEEEECCceEEEE-ecCCcE
Q 038610 140 AAGGTHSVVLTREGHVWTWGQP----WPPGD-----------IKQISVPVRVQGL--EQVKLIAVGAFHNLAL-QEDGAL 201 (374)
Q Consensus 140 ~~g~~~~~~lt~~g~v~~~G~~----~~~~~-----------~~~~~~p~~i~~~--~~i~~i~~g~~~~~~l-~~~g~v 201 (374)
+||..|+++|+++|+||+||.| ++... ......|.++... .+|++|+||.+|++++ +.+|+|
T Consensus 185 a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v 264 (423)
T 3mvd_K 185 ASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVI 264 (423)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCE
T ss_pred ecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeE
Confidence 9999999999999999999988 22221 1234467666544 6899999999999999 699999
Q ss_pred EEEecCCCCCCCCCCCCCCc--cceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceE
Q 038610 202 WAWGNNEYGQLGTGDTQPRS--QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279 (374)
Q Consensus 202 ~~~G~n~~gqlG~~~~~~~~--~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~ 279 (374)
|+||.|.+||||.+...... .|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+.. ......|++
T Consensus 265 ~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~~p~~ 340 (423)
T 3mvd_K 265 WATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV-KDVVEKPTI 340 (423)
T ss_dssp EEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSC-CSCEEEEEE
T ss_pred EEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCc-cccccCceE
Confidence 99999999999996654444 444443 368999999999999999999999999999999999884 344568888
Q ss_pred eecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCC
Q 038610 280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG 359 (374)
Q Consensus 280 v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~ 359 (374)
++.+.. +|++|+||.+|+++|+++|+||+||.|.+||||+|...+...|++|..... .+.+|++|+||.
T Consensus 341 v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~----------~~~~v~~va~G~ 409 (423)
T 3mvd_K 341 VKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNT----------QGKHMLLASGGG 409 (423)
T ss_dssp CTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTT----------TTCCEEEEEECS
T ss_pred eccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCccc----------CCCEEEEEEECC
Confidence 887765 899999999999999999999999999999999999888777766642211 234699999999
Q ss_pred CceEEEEeecccc
Q 038610 360 RHTLAIVEWQTEE 372 (374)
Q Consensus 360 ~ht~~l~~~~~~~ 372 (374)
+||++|+++..++
T Consensus 410 ~ht~~l~~~~k~~ 422 (423)
T 3mvd_K 410 QHAIFLVKADKQD 422 (423)
T ss_dssp SEEEEEEECC---
T ss_pred CcEEEEEcccccC
Confidence 9999999988544
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-65 Score=485.34 Aligned_cols=350 Identities=27% Similarity=0.438 Sum_probs=283.5
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCC---cceeeeEEeecc--CCCceEEEecCCcceEEEecCCCe----------------
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNN---EEREWVCVVKAL--EPYKVRSVVAGSRNSLAICDDGKT---------------- 59 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~---~~~~~p~~v~~~--~~~~i~~v~~g~~~~~~l~~~g~~---------------- 59 (374)
++++|+||+||.|.+||||.+.. .+...|..++.+ ...+|++|+||..|+++|+++|+.
T Consensus 25 ~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~ 104 (473)
T 3of7_A 25 SVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTS 104 (473)
T ss_dssp CSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC
T ss_pred CCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCc
Confidence 57899999999999999999984 456778888776 456999999999999999999981
Q ss_pred ee-----------------------eecCeeecc--c----CCCCeEEEeccCceeEEEeCCCcEEEEeC--CCCCCcCC
Q 038610 60 KT-----------------------ENIPSQVNA--L----SNTKIVQAAIGGWHCLAVDDQGRAYAWGG--NEYGQCGE 108 (374)
Q Consensus 60 ~~-----------------------~~~p~~~~~--~----~~~~i~~i~~G~~~~~~lt~~g~v~~wG~--n~~gqlg~ 108 (374)
.. ...|..++. + ...+|++|+||.+|+++|+++|+||+||. |.+||||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~ 184 (473)
T 3of7_A 105 NAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF 184 (473)
T ss_dssp ---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEES
T ss_pred ccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCC
Confidence 01 346777764 4 36789999999999999999999999998 67899998
Q ss_pred CCCCCCCCcceeecccccccccCC--CCcEEEEEeCCCeEEEEecCCcEEEecCC----CCCCCcc----CcccceEeeC
Q 038610 109 EPERKDDTGRILRRDIVIPQRCAP--KLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIK----QISVPVRVQG 178 (374)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~p~~~~~--~~~i~~i~~g~~~~~~lt~~g~v~~~G~~----~~~~~~~----~~~~p~~i~~ 178 (374)
...... ....|..++. ..+|++|+||..|+++|+++|+||+||.+ ++.+... ....|.++.
T Consensus 185 ~~~~~~--------~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~- 255 (473)
T 3of7_A 185 YQDKIK--------IQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG- 255 (473)
T ss_dssp BTTTBS--------CEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS-
T ss_pred CCCCCc--------cccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecC-
Confidence 554321 3345666544 45699999999999999999999999998 2222221 234566654
Q ss_pred CCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCC----CCccceeeccCCCCcEEEEEecCCeEEEEecCCCEE
Q 038610 179 LEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ----PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVY 254 (374)
Q Consensus 179 ~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~----~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy 254 (374)
+.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+||.+|+++|+++|+||
T Consensus 256 ~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~ 335 (473)
T 3of7_A 256 LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLY 335 (473)
T ss_dssp CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEE
Confidence 3789999999999999999999999999999999998764 235688888777789999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCC------------CCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCC
Q 038610 255 GWGRGEHGRLGFGDND------------KSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGR 322 (374)
Q Consensus 255 ~wG~n~~gqlG~~~~~------------~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~ 322 (374)
+||.|.+||||.+... ......|.++..+ .+|++|+||.+|+++|+++|+||+||.|.+||||+|.
T Consensus 336 ~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~--~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 336 SCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV--PKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp EEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS--CCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCS
T ss_pred EEECCCCCccCCCccccccccccccCCceeeeccCcccCCC--CceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCC
Confidence 9999999999986521 1223455555543 4899999999999999999999999999999999998
Q ss_pred -CCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeeccc
Q 038610 323 -KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371 (374)
Q Consensus 323 -~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~~~ 371 (374)
..+...|++|+.. ...+.+|++|+||.+||+++.....+
T Consensus 414 ~~~~~~~P~~v~~~----------~~~~~~v~~v~cG~~~s~~~~~~~~~ 453 (473)
T 3of7_A 414 FEDDTEVPTRIKNT----------ATQDHNIILVGCGGQFSVSGGVKLSD 453 (473)
T ss_dssp CCSCEEEEEECCCT----------TTTTEEEEEEEECSSEEEEEEEECCH
T ss_pred CCccccCCeEeccc----------ccCCCeEEEEeeCCCeEEEEEecCCc
Confidence 5555555555321 12256799999999999999987543
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.6e-60 Score=445.53 Aligned_cols=309 Identities=32% Similarity=0.594 Sum_probs=271.9
Q ss_pred CCceEEEecCCcceEEEecCCC----------------eeeeecCeeecccCCCCeEEEeccCceeEEEeCCC-cEEEEe
Q 038610 37 PYKVRSVVAGSRNSLAICDDGK----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQG-RAYAWG 99 (374)
Q Consensus 37 ~~~i~~v~~g~~~~~~l~~~g~----------------~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g-~v~~wG 99 (374)
..+|++|+||..|+++|+++|+ ......|..+..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4589999999999999999998 23456788888888889999999999999999986 999999
Q ss_pred CCCCCCcCCCCCCCCCCcceeeccccccccc--CCCCcEEEEEeCCCeEEEEecCCcEEEecCC----CCCCCccCcccc
Q 038610 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRC--APKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVP 173 (374)
Q Consensus 100 ~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~--~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p 173 (374)
.|.+||||.+.... ...|..+ ....+|++|+||..|+++|+++|+||+||.| ++.+.......|
T Consensus 95 ~n~~GqLG~g~~~~----------~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 164 (406)
T 4d9s_A 95 WGDFGRLGHGNSSD----------LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVP 164 (406)
T ss_dssp CCGGGTTCSSSCCC----------EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEE
T ss_pred CCCCcCCCCCCCCc----------cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccc
Confidence 99999999987642 2333333 3466899999999999999999999999998 455555666778
Q ss_pred eEeeCC--CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCC
Q 038610 174 VRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDG 251 (374)
Q Consensus 174 ~~i~~~--~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g 251 (374)
.++..+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+...+|++|+||.+|+++|+++|
T Consensus 165 ~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G 244 (406)
T 4d9s_A 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG 244 (406)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTC
T ss_pred eEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCC
Confidence 888766 489999999999999999999999999999999999988888999998888889999999999999999999
Q ss_pred CEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCcee
Q 038610 252 EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPME 331 (374)
Q Consensus 252 ~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~ 331 (374)
+||+||.|.+||||.+. ......|.++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.+...+...|++
T Consensus 245 ~v~~wG~n~~GqlG~g~--~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 322 (406)
T 4d9s_A 245 ALYTYGWSKYGQLGHGD--LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 322 (406)
T ss_dssp CEEEEECCTTSTTCSSS--CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEE
T ss_pred CEEEeeCCCCCCCCCCC--CcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEE
Confidence 99999999999999997 6778899999988888899999999999999999999999999999999998887777766
Q ss_pred eeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 332 VPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 332 v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
++.+. ..+|++|+||.+|++||+++.
T Consensus 323 v~~~~------------~~~v~~va~G~~hs~alt~~G 348 (406)
T 4d9s_A 323 VRFPD------------DQKVVQVSCGWRHTLAVTERN 348 (406)
T ss_dssp ECCGG------------GCCEEEEEECSSEEEEEETTS
T ss_pred EeccC------------CCcEEEEEeCCCeEEEEeCCC
Confidence 64322 235999999999999998764
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-57 Score=419.72 Aligned_cols=293 Identities=30% Similarity=0.603 Sum_probs=260.1
Q ss_pred CCCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCC--ceEEEecCCcceEEEecCCC----------------eeee
Q 038610 1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPY--KVRSVVAGSRNSLAICDDGK----------------TKTE 62 (374)
Q Consensus 1 l~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~--~i~~v~~g~~~~~~l~~~g~----------------~~~~ 62 (374)
|+++|+||+||.|.+||||.+..+....|.+++.+... ++++|+||.+|+++|+++|+ ....
T Consensus 68 l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~ 147 (389)
T 3kci_A 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC 147 (389)
T ss_dssp EETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred EcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccC
Confidence 57899999999999999999999889999999988776 44788999999999999998 2345
Q ss_pred ecCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccC--CCCcEEEEE
Q 038610 63 NIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVA 140 (374)
Q Consensus 63 ~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~--~~~~i~~i~ 140 (374)
..|..+..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|..+. ...+|++|+
T Consensus 148 ~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~----------~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 148 DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED----------QLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC----------EEEEEECGGGTTSCEEEEE
T ss_pred cCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc----------cccceEecccCCCeEEEEE
Confidence 678888888888999999999999999999999999999999999987642 33444443 367899999
Q ss_pred eCC--CeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC--CCeeEEEECCceEEEEecCCcEEEEecCCCCCC
Q 038610 141 AGG--THSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL--EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212 (374)
Q Consensus 141 ~g~--~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~--~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gql 212 (374)
||. .|+++|+++|+||+||.+ ++.+.......|.+++.+ .+|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTT
T ss_pred EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence 995 899999999999999998 455555666778888776 369999999999999999999999999999999
Q ss_pred CCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEE
Q 038610 213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS 292 (374)
Q Consensus 213 G~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~ 292 (374)
|.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+. ......|+++..+.+.+|++|+
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~--~~~~~~P~~v~~~~~~~v~~va 375 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT--TNAIQRPRLVAALQGKKVNRVA 375 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS--CCCEEEEEECGGGTTSCCCEEE
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCC--CCCccCcEEecccCCCCEEEEE
Confidence 99998888899999988888999999999999999999999999999999999998 6778899999988888999999
Q ss_pred ccCCeEEEEecCC
Q 038610 293 CGGTHSVALTRDG 305 (374)
Q Consensus 293 ~G~~~~~~lt~~g 305 (374)
||.+|+++|++++
T Consensus 376 ~G~~ht~al~~~~ 388 (389)
T 3kci_A 376 CGSAHTLAWSTSK 388 (389)
T ss_dssp EETTEEEEECC--
T ss_pred ecCCcEEEEecCC
Confidence 9999999999763
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-56 Score=421.18 Aligned_cols=307 Identities=22% Similarity=0.263 Sum_probs=251.3
Q ss_pred CCceEEEecCCcceEEEecCCC-----------------eeeeecCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEe
Q 038610 37 PYKVRSVVAGSRNSLAICDDGK-----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWG 99 (374)
Q Consensus 37 ~~~i~~v~~g~~~~~~l~~~g~-----------------~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG 99 (374)
..++++|++|..|+++++++|+ ......|..+..+. .|++|+||..|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEEeE
Confidence 3478899999999999999998 13345667776665 4899999999999999999999999
Q ss_pred CCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecC--C----CCCCCccCcccc
Q 038610 100 GNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--P----WPPGDIKQISVP 173 (374)
Q Consensus 100 ~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--~----~~~~~~~~~~~p 173 (374)
.|.+||||.+..... ....|..+....+|++|+||..|+++|+++|+||+||. + ++.......+.|
T Consensus 101 ~n~~GqLG~~~~~~~--------~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p 172 (423)
T 3mvd_K 101 CNDEGALGRDTSEDG--------SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP 172 (423)
T ss_dssp CCSSSTTCSCCCSTT--------SSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEE
T ss_pred CCCCcCCCCCCcCCc--------cccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCcee
Confidence 999999999876532 34567777667789999999999999999999999998 5 233333445667
Q ss_pred eEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCC-----------CCccceeeccCCCCcEEEEEecCC
Q 038610 174 VRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQ-----------PRSQPIPVQGLSGLTLVDIAAGGW 242 (374)
Q Consensus 174 ~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~-----------~~~~p~~~~~~~~~~i~~i~~G~~ 242 (374)
.++....+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++......+|++|+||.+
T Consensus 173 ~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~ 252 (423)
T 3mvd_K 173 IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY 252 (423)
T ss_dssp EESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT
T ss_pred eEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc
Confidence 777666899999999999999999999999999999999997653 345788887777788999999999
Q ss_pred eEEEE-ecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCC
Q 038610 243 HSTAL-TDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYG 321 (374)
Q Consensus 243 ~~~~l-t~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g 321 (374)
|++++ +++|+||+||.|.+||||.+.........|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 253 ~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g 329 (423)
T 3mvd_K 253 CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLG 329 (423)
T ss_dssp EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSS
T ss_pred EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCC
Confidence 99999 6999999999999999999765566666777766 3689999999999999999999999999999999999
Q ss_pred CCCCC-CCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 322 RKVTT-GQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 322 ~~~~~-~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
...+. ..|.++ +... . +|++|+||.+|+++|+++.
T Consensus 330 ~~~~~~~~p~~v----~~l~--------~-~v~~ia~G~~hs~alt~~G 365 (423)
T 3mvd_K 330 DVKDVVEKPTIV----KKLT--------E-KIVSVGCGEVCSYAVTIDG 365 (423)
T ss_dssp SCCSCEEEEEEC----TTCC--------S-CEEEEEEETTEEEEEETTS
T ss_pred CccccccCceEe----ccCC--------C-CEEEEEcCCCeEEEEcCCC
Confidence 86552 234333 2211 1 5999999999999998654
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1e-55 Score=414.57 Aligned_cols=302 Identities=28% Similarity=0.425 Sum_probs=244.3
Q ss_pred EEecCCcceEEEecCCC-----------------eeeeecCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCC
Q 038610 42 SVVAGSRNSLAICDDGK-----------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYG 104 (374)
Q Consensus 42 ~v~~g~~~~~~l~~~g~-----------------~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~g 104 (374)
+.+.+..|+++|+++|+ ......|..+..+ .+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G 89 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG 89 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCC
Confidence 44455789999998887 1124567777654 5799999999999999999999999999999
Q ss_pred CcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecC--C----CCCCCc-cCcccceEee
Q 038610 105 QCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ--P----WPPGDI-KQISVPVRVQ 177 (374)
Q Consensus 105 qlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~--~----~~~~~~-~~~~~p~~i~ 177 (374)
|||.+..... ....|..+....+|++|+||..|+++|+++|+||+||. + ++.... .....|.++.
T Consensus 90 qLG~~~~~~~--------~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~ 161 (413)
T 1a12_A 90 ALGRDTSVEG--------SEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ 161 (413)
T ss_dssp TTCSCCCSTT--------GGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC
T ss_pred CCCCCCCCCc--------cccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEec
Confidence 9999876322 34566666556799999999999999999999999998 4 112211 2234588887
Q ss_pred CCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCC-----------CccceeeccC-----CCCcEEEEEecC
Q 038610 178 GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP-----------RSQPIPVQGL-----SGLTLVDIAAGG 241 (374)
Q Consensus 178 ~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~-----------~~~p~~~~~~-----~~~~i~~i~~G~ 241 (374)
...+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+... ...+|++|+||.
T Consensus 162 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~ 241 (413)
T 1a12_A 162 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241 (413)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET
T ss_pred CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC
Confidence 678999999999999999999999999999999999875422 1345444432 346899999999
Q ss_pred CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCC--CcEEEEEccCCeEEEEecCCCEEEEeCCCCCccC
Q 038610 242 WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAG--EDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLG 319 (374)
Q Consensus 242 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG 319 (374)
+|+++|+++|+||+||.|.+||||.+. ......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus 242 ~hs~alt~~G~v~~wG~n~~gqLG~~~--~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG 319 (413)
T 1a12_A 242 YFTFAISHEGHVYGFGLSNYHQLGTPG--TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG 319 (413)
T ss_dssp TEEEEEETTCCEEEEECCTTSTTSCSS--CSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTC
T ss_pred CEEEEEeCCCCEEEEeCCCCcCCCCCC--CCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccC
Confidence 999999999999999999999999987 566788999988765 5699999999999999999999999999999999
Q ss_pred CCC-CCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 320 YGR-KVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 320 ~g~-~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
+|. ......|++++ ... +|++|+||.+|+++|+++.
T Consensus 320 ~g~~~~~~~~P~~v~----~l~----------~v~~v~~G~~hs~alt~~G 356 (413)
T 1a12_A 320 LGEGAEEKSIPTLIS----RLP----------AVSSVACGASVGYAVTKDG 356 (413)
T ss_dssp SCTTCCCEEEEEECC----SSS----------SEEEEEECSSEEEEEETTS
T ss_pred CCCCCccccCCEEec----ccC----------ceeEEEECcceEEEEeCCC
Confidence 994 44444444442 210 4999999999999998764
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-54 Score=410.46 Aligned_cols=295 Identities=27% Similarity=0.442 Sum_probs=231.9
Q ss_pred eecCeeeccc--CCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcce-------------eeccccc
Q 038610 62 ENIPSQVNAL--SNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRI-------------LRRDIVI 126 (374)
Q Consensus 62 ~~~p~~~~~~--~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~-------------~~~~~~~ 126 (374)
...|..++.+ ...+|++|+||..|+++|+++|+||+||.|.+||||.+.......... .......
T Consensus 53 ~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (473)
T 3of7_A 53 VKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELEST 132 (473)
T ss_dssp EEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHS
T ss_pred ccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccC
Confidence 4556666655 566899999999999999999999999999999999987653210000 0001345
Q ss_pred ccccC--------CCCcEEEEEeCCCeEEEEecCCcEEEecCC------CC--CCCccCcccceEeeCCCC--eeEEEEC
Q 038610 127 PQRCA--------PKLIVRQVAAGGTHSVVLTREGHVWTWGQP------WP--PGDIKQISVPVRVQGLEQ--VKLIAVG 188 (374)
Q Consensus 127 p~~~~--------~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~------~~--~~~~~~~~~p~~i~~~~~--i~~i~~g 188 (374)
|..++ ...+|++|+||..|+++|+++|+||+||.+ ++ .........|.+++.+.. |++|+||
T Consensus 133 P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G 212 (473)
T 3of7_A 133 PAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG 212 (473)
T ss_dssp CEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC
T ss_pred ceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec
Confidence 55554 257999999999999999999999999974 11 233445667888887754 9999999
Q ss_pred CceEEEEecCCcEEEEecCCCCCCCCCCCCC----CccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCC
Q 038610 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQP----RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRL 264 (374)
Q Consensus 189 ~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~----~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gql 264 (374)
.+|+++|+++|+||+||.|.+||||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 213 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~Gql 289 (473)
T 3of7_A 213 KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQC 289 (473)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTT
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCc
Confidence 9999999999999999999999999986543 345555432 689999999999999999999999999999999
Q ss_pred CCCCCCC--CccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCC----------CCCceee
Q 038610 265 GFGDNDK--SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVT----------TGQPMEV 332 (374)
Q Consensus 265 G~~~~~~--~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~----------~~~p~~v 332 (374)
|.+.... .....|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.... .......
T Consensus 290 G~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~ 369 (473)
T 3of7_A 290 GVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPL 369 (473)
T ss_dssp CCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEE
T ss_pred CCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeecc
Confidence 9987421 345789999988888999999999999999999999999999999999986421 1112223
Q ss_pred eeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610 333 PINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ 369 (374)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~ 369 (374)
|..++.. -+|++|+||.+|++||+++.
T Consensus 370 P~~v~~~----------~~v~~Ia~G~~hs~al~~~G 396 (473)
T 3of7_A 370 PTKLNNV----------PKFKSVAAGSHHSVAVAQNG 396 (473)
T ss_dssp EEECCSS----------CCEEEEEECSSEEEEEETTS
T ss_pred CcccCCC----------CceEEEEeCCCeEEEEeCCC
Confidence 3333321 04999999999999998764
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=7.9e-52 Score=366.73 Aligned_cols=268 Identities=27% Similarity=0.445 Sum_probs=212.6
Q ss_pred CcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCCeee------eecCeeecccCCCCeEE
Q 038610 5 TSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKT------ENIPSQVNALSNTKIVQ 78 (374)
Q Consensus 5 g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~~~------~~~p~~~~~~~~~~i~~ 78 (374)
.+||+||.|+..++..... +. ..+|++|+||..|+++|+ +|+... -....+ .....+|++
T Consensus 2 ~~v~~WG~n~~~~~~~~p~---------~~--~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p--~~~~~~i~~ 67 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEATVPA---------EA--QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP--AATQSGVDA 67 (282)
T ss_dssp CEEEEECSCCTTSTTCCCG---------GG--SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC--GGGGSCCCE
T ss_pred eEEEEeCCCCCcCcccCCc---------cc--cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC--ccCCCCEEE
Confidence 4699999997666553322 11 237999999999999998 888211 111111 122347999
Q ss_pred EeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEe
Q 038610 79 AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTW 158 (374)
Q Consensus 79 i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~ 158 (374)
|+||.+|+++|+ +|+||+||.|.+||||.+. .+ ..+|++|+||.+|+++|+ +|+||+|
T Consensus 68 ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~------------------~~--~~~v~~ia~G~~hs~al~-~G~v~~w 125 (282)
T 3qhy_B 68 IAAGNYHSLALK-DGEVIAWGGNEDGQTTVPA------------------EA--RSGVDAIAAGAWASYALK-DGKVIAW 125 (282)
T ss_dssp EEECSSEEEEEE-TTEEEEEECCTTSTTCCCG------------------GG--SSSEEEEEEETTEEEEEE-TTEEEEE
T ss_pred EEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCc------------------cc--CCCeEEEECcCCEEEEEe-CCeEEEe
Confidence 999999999996 9999999999999998532 12 347999999999999999 9999999
Q ss_pred cCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEE
Q 038610 159 GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA 238 (374)
Q Consensus 159 G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~ 238 (374)
|.+.. .....| .+...+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+
T Consensus 126 G~n~~----gqlg~~--~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~ 186 (282)
T 3qhy_B 126 GDDSD----GQTTVP--AEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVA 186 (282)
T ss_dssp ECCTT----STTSCC--GGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEE
T ss_pred cCCCC----CcCCCC--ccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEE
Confidence 99821 112222 334478999999999999999 89999999999999983 2222 26899999
Q ss_pred ecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCcc
Q 038610 239 AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRL 318 (374)
Q Consensus 239 ~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqL 318 (374)
||.+|+++| ++|+||+||.|.+||||.+. +. ..+|++|+||.+|+++|+ +|+||+||.|.++|+
T Consensus 187 ~G~~hs~al-~~G~v~~wG~n~~gqlg~p~------------~~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 187 GGIFHSLAL-KDGKVIAWGDNRYKQTTVPT------------EA--LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPS 250 (282)
T ss_dssp ECSSEEEEE-ETTEEEEEECCTTSTTCCCG------------GG--GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCG
T ss_pred ecCCEEEEE-ECCeEEEEECCCCCCCCCCc------------cc--CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccc
Confidence 999999999 89999999999999998643 11 147899999999999999 999999999999998
Q ss_pred CCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeeccc
Q 038610 319 GYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTE 371 (374)
Q Consensus 319 G~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~~~ 371 (374)
+.. . .|++|+||..|+++|+++.+.
T Consensus 251 ~v~----------------~------------~v~~iaaG~~h~~al~~~~~~ 275 (282)
T 3qhy_B 251 SVQ----------------S------------GVSSIEAGPNAAYALKGGSGS 275 (282)
T ss_dssp GGS----------------S------------CEEEEEECSSCEEEEEC----
T ss_pred cCC----------------C------------CcEEEEECcCeEEEEecCCCC
Confidence 751 1 289999999999999998754
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.7e-45 Score=326.12 Aligned_cols=211 Identities=28% Similarity=0.456 Sum_probs=177.8
Q ss_pred CeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCc
Q 038610 75 KIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGH 154 (374)
Q Consensus 75 ~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~ 154 (374)
+|++|+||..|+++|+ +|+||+||.|.+||||.+.. ...+|++|+||..|+++|+ +|+
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~--------------------~~~~i~~ia~G~~hs~~l~-~G~ 82 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA--------------------TQSGVDAIAAGNYHSLALK-DGE 82 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGG--------------------GGSCCCEEEECSSEEEEEE-TTE
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc--------------------CCCCEEEEEeCCCEEEEEE-CCE
Confidence 6999999999999998 99999999999999995321 1347999999999999996 999
Q ss_pred EEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcE
Q 038610 155 VWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTL 234 (374)
Q Consensus 155 v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i 234 (374)
||+||.|. ......|.++. .+|++|+||.+|+++|+ +|+||+||.|.+||||.. .+ . ..+|
T Consensus 83 v~~wG~n~----~Gqlg~P~~~~--~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~~--~--~~~i 143 (282)
T 3qhy_B 83 VIAWGGNE----DGQTTVPAEAR--SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------AE--A--QSGV 143 (282)
T ss_dssp EEEEECCT----TSTTCCCGGGS--SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------GG--G--GSSE
T ss_pred EEEeeCCC----CCCCCCCcccC--CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------cc--C--CCCe
Confidence 99999982 22223454443 68999999999999999 999999999999999842 11 1 2579
Q ss_pred EEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCC
Q 038610 235 VDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 235 ~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~ 314 (374)
++|+||.+|+++|+ +|+||+||.|.+||||.. .++ ..+|++|+||.+|+++| ++|+||+||.|.
T Consensus 144 ~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p----------~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 144 TALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP----------AEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC----------GGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred EEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc----------eec----CCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence 99999999999999 899999999999999842 222 26899999999999999 899999999999
Q ss_pred CCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEE
Q 038610 315 HGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIV 366 (374)
Q Consensus 315 ~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~ 366 (374)
+||||.+. +. +. +|++|+||.+|+++|+
T Consensus 208 ~gqlg~p~--------~~---~~-------------~v~~i~~G~~h~~al~ 235 (282)
T 3qhy_B 208 YKQTTVPT--------EA---LS-------------GVSAIASGEWYSLALK 235 (282)
T ss_dssp TSTTCCCG--------GG---GS-------------SCCEEEECSSCEEEEE
T ss_pred CCCCCCCc--------cc---CC-------------CceEEEcCCCEEEEEE
Confidence 99998532 10 11 3899999999999998
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.69 E-value=0.0028 Score=52.62 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=59.1
Q ss_pred CCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCC
Q 038610 74 TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153 (374)
Q Consensus 74 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g 153 (374)
..|.+|+....|..++--+++|++||+++.||+-.+.. ..+..++.+|.+|++-+..-+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t---------------------agPfla~~AG~~fTVTVn~~n 367 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH---------------------AGPYIQLAAGHNFTVTVNTLN 367 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG---------------------GCCEEEEEECSSEEEEEETTC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC---------------------cchHHhHhccCCeEEEEecee
Confidence 36889999999999999999999999999999876654 345889999999999999999
Q ss_pred cEEEecCC
Q 038610 154 HVWTWGQP 161 (374)
Q Consensus 154 ~v~~~G~~ 161 (374)
.+-.||..
T Consensus 368 yv~FWGDS 375 (400)
T 4gbf_A 368 QVMFWGDS 375 (400)
T ss_dssp CEEEEECC
T ss_pred eEEEecCC
Confidence 99999987
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.26 E-value=0.0096 Score=49.46 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=59.7
Q ss_pred CCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCC
Q 038610 180 EQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRG 259 (374)
Q Consensus 180 ~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n 259 (374)
.+|.+|+....|..++--+++++.+|+++.||+-..... .++.++.+|.++++-+..-..+-.||+.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 678899999999999999999999999999998543211 3688999999999999999999999986
Q ss_pred CCCCC
Q 038610 260 EHGRL 264 (374)
Q Consensus 260 ~~gql 264 (374)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 44333
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.13 E-value=1.9 Score=39.30 Aligned_cols=224 Identities=9% Similarity=0.042 Sum_probs=131.6
Q ss_pred ceEEEecCCcceEEEecCCCeeee--ecCeeecc--cCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCC
Q 038610 39 KVRSVVAGSRNSLAICDDGKTKTE--NIPSQVNA--LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKD 114 (374)
Q Consensus 39 ~i~~v~~g~~~~~~l~~~g~~~~~--~~p~~~~~--~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~ 114 (374)
.|..++......+.-..||..... .....+.. .....|..++......+.-..||.|..|-.... ++
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~~-------- 205 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG-EM-------- 205 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC-CE--------
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC-cE--------
Confidence 455555544444555555551111 11111111 223468888887777777788999999965431 10
Q ss_pred CCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCCCCCCCccCcccceEe-eCCCCeeEEEECCceEE
Q 038610 115 DTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVGAFHNL 193 (374)
Q Consensus 115 ~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g~~~~~ 193 (374)
..........|..+.......+.-+.+|.|..|-..... .......+ .....|..++......+
T Consensus 206 -----------~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~l~ 270 (435)
T 1p22_A 206 -----------LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDDKYIV 270 (435)
T ss_dssp -----------EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS----CCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred -----------EEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC----CceeeeEecCCCCcEEEEEeCCCEEE
Confidence 001111245678888877778888899999999654111 11100111 22256778887777777
Q ss_pred EEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCc
Q 038610 194 ALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSS 273 (374)
Q Consensus 194 ~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~ 273 (374)
.-..+|.|..|-..... ....+. .....|..+.......+.-..+|.|..|-.....
T Consensus 271 s~~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~----------- 327 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA----------- 327 (435)
T ss_dssp EEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----------
T ss_pred EEeCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC-----------
Confidence 77889999999543210 111111 1224677777777777777889999999753210
Q ss_pred cccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeC
Q 038610 274 KMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 274 ~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~ 312 (374)
....+.. ....|..++......+.-..+|.|..|-.
T Consensus 328 --~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 328 --CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp --EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred --EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 1111221 23567788887777777778999999974
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.11 E-value=1.9 Score=39.27 Aligned_cols=236 Identities=8% Similarity=0.017 Sum_probs=129.9
Q ss_pred CceEEEecCCcceEEEecCCCeeee--ecCeeecc--cCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCC
Q 038610 38 YKVRSVVAGSRNSLAICDDGKTKTE--NIPSQVNA--LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERK 113 (374)
Q Consensus 38 ~~i~~v~~g~~~~~~l~~~g~~~~~--~~p~~~~~--~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~ 113 (374)
..|..++......+.-..||..... .....+.. .....|..++......+.-..||.|..|-......+
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~------- 246 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI------- 246 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC-------
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc-------
Confidence 3566666644444444555552111 11111111 233468888888888888889999999964331110
Q ss_pred CCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECCceE
Q 038610 114 DDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGAFHN 192 (374)
Q Consensus 114 ~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~~~~ 192 (374)
............|..++....+.+.-..+|.|..|-.... .....+. ....|..++......
T Consensus 247 ----------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l 309 (435)
T 1p22_A 247 ----------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-------EFVRTLNGHKRGIACLQYRDRLV 309 (435)
T ss_dssp ----------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEEETTEE
T ss_pred ----------eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC-------cEEEEEcCCCCcEEEEEeCCCEE
Confidence 0000111124567777777777777888999999975411 1111122 225677777777777
Q ss_pred EEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCC
Q 038610 193 LALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS 272 (374)
Q Consensus 193 ~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~ 272 (374)
+.-..+|.|..|-.... .+..........|..++......+.-..+|.|..|--........ ..
T Consensus 310 ~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~----~~ 373 (435)
T 1p22_A 310 VSGSSDNTIRLWDIECG------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA----PA 373 (435)
T ss_dssp EEEETTSCEEEEETTTC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS----CT
T ss_pred EEEeCCCeEEEEECCCC------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc----cc
Confidence 77788999999964321 111111112246778877667777778899999997422111000 00
Q ss_pred ccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCC
Q 038610 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 273 ~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~ 314 (374)
.......+.. ....|..++......+.-..||.|..|-...
T Consensus 374 ~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 374 GTLCLRTLVE-HSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TTTEEEEECC-CSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred cchheeeccC-CCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 0001111111 1245666666666666666789999997654
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.51 E-value=1.7 Score=42.82 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=11.8
Q ss_pred CeEEEEecCCCEEEEeC
Q 038610 296 THSVALTRDGHIFSFGR 312 (374)
Q Consensus 296 ~~~~~lt~~g~vy~~G~ 312 (374)
.|+++...+|+||++|-
T Consensus 657 gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp SCEEECC---CEEEECC
T ss_pred eeeEEEeCCCEEEEEeC
Confidence 48888888889999986
No 18
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.44 E-value=3.3 Score=35.43 Aligned_cols=218 Identities=13% Similarity=0.052 Sum_probs=119.4
Q ss_pred CCCCeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CCeE
Q 038610 72 SNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHS 146 (374)
Q Consensus 72 ~~~~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~ 146 (374)
.+..+..+.... .+.+++|++|++|.--.... + ... + .. . +...++|..+.+- ..+.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~l-----p-~~~-------~-~~---l-l~~~e~i~~v~~~~~~~~~~ 83 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQA-----L-QGS-------K-VS---L-KSREEKIVGAFIREKFGNRL 83 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHH-----H-TSE-------E-CC---C-SSTTCCEEEEEEGGGSCSEE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhC-----c-cCc-------c-cc---c-CCCCCEEEEEECCcCCCCEE
Confidence 445566666444 45889999999998643211 0 000 0 00 1 3457778888761 2578
Q ss_pred EEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEE--CCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccce
Q 038610 147 VVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224 (374)
Q Consensus 147 ~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~ 224 (374)
+++|++|.+...-..... ....-..-..+...+.+..+.. +..+.++++++|++|.+-..+.-.+|....-..
T Consensus 84 v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~---- 158 (276)
T 3no0_A 84 LLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ---- 158 (276)
T ss_dssp EEEETTSEEEEEEGGGTT-TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----
T ss_pred EEEeCCCEEEEEEHHHhh-hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----
Confidence 889999988776533110 0000000111222245555543 456789999999999997665444443221110
Q ss_pred eeccCCCCcEEEEEec--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEE--EccCCeEEE
Q 038610 225 PVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV--SCGGTHSVA 300 (374)
Q Consensus 225 ~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i--~~G~~~~~~ 300 (374)
.+....+++|+.+... ....+++|++|.+.-.--.++-..+.+.. ..... ..+.+++.+ ..+.+..++
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gk--Gv~~i------~~~~~lv~~~~~~~~~~i~~ 230 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVK--GTEVS------GTKDTLVDLIPIKEEVELLI 230 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCC--CEECC------CSSSCEEEEEEESSEEEEEE
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCc--ceEEE------cCCCcEEEEEEeCCCCEEEE
Confidence 1222234677776544 34677889999877666444433332211 00000 112344433 235678899
Q ss_pred EecCCCEEE--EeCCCCCccCC
Q 038610 301 LTRDGHIFS--FGRGDHGRLGY 320 (374)
Q Consensus 301 lt~~g~vy~--~G~n~~gqLG~ 320 (374)
++++|++.- +-.++--.+|.
T Consensus 231 ~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 231 TTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp EETTSCEEEEEEEGGGSCBCCT
T ss_pred EcCCCeEEEeeeCHHHCCCcCC
Confidence 999999988 76655555554
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.12 E-value=4.9 Score=36.49 Aligned_cols=190 Identities=12% Similarity=0.062 Sum_probs=117.0
Q ss_pred CCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecC
Q 038610 73 NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152 (374)
Q Consensus 73 ~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~ 152 (374)
...|..++......+....||.|..|-.... ++ ..........|..++......+.-..+
T Consensus 199 ~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~-------------------~~~~~~~~~~v~~~~~~~~~l~~~~~d 258 (445)
T 2ovr_B 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETG-QC-------------------LHVLMGHVAAVRCVQYDGRRVVSGAYD 258 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEESSSC-CE-------------------EEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred CCcEEEEEecCCEEEEEeCCCEEEEEECCCC-cE-------------------EEEEcCCcccEEEEEECCCEEEEEcCC
Confidence 3468888877778888889999999964421 10 000011244567777767777777889
Q ss_pred CcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCC
Q 038610 153 GHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSG 231 (374)
Q Consensus 153 g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~ 231 (374)
|.|..|-... ......+. ....|..++....+.+.-..+|.|..|-..... +........
T Consensus 259 g~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~ 319 (445)
T 2ovr_B 259 FMVKVWDPET-------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN------------CIHTLTGHQ 319 (445)
T ss_dssp SCEEEEEGGG-------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC------------EEEEECCCC
T ss_pred CEEEEEECCC-------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC------------EEEEEcCCc
Confidence 9999986431 01111121 225678888777777777889999999643311 111111122
Q ss_pred CcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeec--CCCCcEEEEEccCCeEEEEecCCCEEE
Q 038610 232 LTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL--LAGEDIVQVSCGGTHSVALTRDGHIFS 309 (374)
Q Consensus 232 ~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~--~~~~~i~~i~~G~~~~~~lt~~g~vy~ 309 (374)
..+..+.......+.-..+|.|+.|-..... ....+.. .....|..++....+.+.-..+|.|..
T Consensus 320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQ-------------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 386 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCC-------------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEE
T ss_pred ccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-------------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEE
Confidence 4566677767777777889999999743211 1111211 122467788877777777788999999
Q ss_pred EeCCC
Q 038610 310 FGRGD 314 (374)
Q Consensus 310 ~G~n~ 314 (374)
|-...
T Consensus 387 wd~~~ 391 (445)
T 2ovr_B 387 WDLKT 391 (445)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 97643
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.23 E-value=8.9 Score=37.21 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=31.5
Q ss_pred eEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEE---E-ECCceEEEEecCCcEEEEec
Q 038610 145 HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLI---A-VGAFHNLALQEDGALWAWGN 206 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i---~-~g~~~~~~l~~~g~v~~~G~ 206 (374)
+++++..+|+||++|-.... ...... | .......+ . .-..|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~-~v~~yd-~----~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK-KTSLYD-S----SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT-CEEEEE-G----GGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCC-ceEEec-C----cCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 34667789999999975221 110000 0 00111111 1 23567778777999999996
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.95 E-value=8.4 Score=37.78 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=33.2
Q ss_pred CCeEEEEec-CCcEEEecCCCCCCCccCcccceEeeCC-CCeeEE----EECCceEEEEecCCcEEEEec
Q 038610 143 GTHSVVLTR-EGHVWTWGQPWPPGDIKQISVPVRVQGL-EQVKLI----AVGAFHNLALQEDGALWAWGN 206 (374)
Q Consensus 143 ~~~~~~lt~-~g~v~~~G~~~~~~~~~~~~~p~~i~~~-~~i~~i----~~g~~~~~~l~~~g~v~~~G~ 206 (374)
..|+++... +|+||++|-....... ...-...... ...+.+ ..-..|++++..+++||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~--~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQG--LSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCB--CCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCc--cccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECC
Confidence 457777776 8999999975222110 0000011110 111111 134567777766899999984
No 22
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.95 E-value=11 Score=32.97 Aligned_cols=229 Identities=13% Similarity=0.025 Sum_probs=116.6
Q ss_pred CCCeEEE--eccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC-----Ce
Q 038610 73 NTKIVQA--AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG-----TH 145 (374)
Q Consensus 73 ~~~i~~i--~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~-----~~ 145 (374)
+..+..+ +....+.+++|+.|++|..-...-=..+..... . ++..-..+...++|..+.... .+
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G-------~--~i~~~l~l~~~e~i~~~~~~~~~~~e~~ 111 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG-------Q--HVANLLAFQPEERIAQVIQIRGYTDAPY 111 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC-------E--EHHHHTTCCTTCCEEEEEEESSTTSSSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC-------E--EHHHccCCCCCCEEEEEEEeccCCCCCE
Confidence 3345544 455667888999999999874332111111100 0 111111234577888876654 46
Q ss_pred EEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEE--EECCceEEEEecCCcEEEEecC--CCCCCCCCCCCCCc
Q 038610 146 SVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNN--EYGQLGTGDTQPRS 221 (374)
Q Consensus 146 ~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i--~~g~~~~~~l~~~g~v~~~G~n--~~gqlG~~~~~~~~ 221 (374)
.+++|++|.+.-.-..........-..-..+.....+..+ ..+..+.++++++|++|.+-.. .--.+|....-.
T Consensus 112 ~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv-- 189 (327)
T 3uc1_A 112 LVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV-- 189 (327)
T ss_dssp EEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE--
T ss_pred EEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe--
Confidence 7888999988775433100000000001111222344443 3367789999999999998776 433333221110
Q ss_pred cceeeccCCCCcEEEEEecC--CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC-CCcEEEE--EccCC
Q 038610 222 QPIPVQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-GEDIVQV--SCGGT 296 (374)
Q Consensus 222 ~p~~~~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~-~~~i~~i--~~G~~ 296 (374)
..+....+++|+.+..-. .+.+++|++|.+.-.--.++-..+.+...... +.... +..++.+ ..+..
T Consensus 190 --~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~------~~l~~~~d~lv~~~~~~~~~ 261 (327)
T 3uc1_A 190 --QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT------VMYDRRRGRLVGALIVDDDS 261 (327)
T ss_dssp --ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES------SCCCTTTCSEEEEEEECTTC
T ss_pred --eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE------EEecCCCCeEEEEEEeCCCc
Confidence 112222456787776543 46778888886554432222211111100000 01111 1233332 34667
Q ss_pred eEEEEecCCCEEEEeCCCCCccCC
Q 038610 297 HSVALTRDGHIFSFGRGDHGRLGY 320 (374)
Q Consensus 297 ~~~~lt~~g~vy~~G~n~~gqLG~ 320 (374)
..+++|++|++.-+-.++--.+|.
T Consensus 262 ~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 262 ELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp EEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred cEEEEcCCCeEEEEehhhccccCC
Confidence 889999999988885544444443
No 23
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.76 E-value=21 Score=31.72 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=83.7
Q ss_pred eEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEEEEecCC
Q 038610 76 IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSVVLTREG 153 (374)
Q Consensus 76 i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~~lt~~g 153 (374)
+..++-...+.++...+|.|+.|-.... ++ ... ........|..++.. ..+.++-+.+|
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~~----------------~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSG-SV----------------SAL--AETDESTYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTC-CE----------------EEE--EECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCC-cE----------------eEe--eecCCCCCEEEEEECCCCCEEEEECCCC
Confidence 4446655677888889999999975431 10 000 001123446666554 34555566789
Q ss_pred cEEEecCCCCCCCccCcccceEe-eCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCC
Q 038610 154 HVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232 (374)
Q Consensus 154 ~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~ 232 (374)
.|..|-.... .....+ .....|..++......+.-..+|.|+.|-....+ .+.........
T Consensus 157 ~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~ 218 (401)
T 4aez_A 157 LVDIYDVESQ-------TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQGHSS 218 (401)
T ss_dssp CEEEEETTTC-------CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSS
T ss_pred eEEEEECcCC-------eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEcCCCC
Confidence 9999865411 111112 2235678888777777777888999999653211 11111111224
Q ss_pred cEEEEEecC--CeEEEEecCCCEEEEeCC
Q 038610 233 TLVDIAAGG--WHSTALTDDGEVYGWGRG 259 (374)
Q Consensus 233 ~i~~i~~G~--~~~~~lt~~g~vy~wG~n 259 (374)
.|..++... ...+.-..+|.|+.|-..
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 566666543 344555678999999754
No 24
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.38 E-value=22 Score=31.60 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=97.1
Q ss_pred CCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEEEEe
Q 038610 73 NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSVVLT 150 (374)
Q Consensus 73 ~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~~lt 150 (374)
...|..++......+.-..+|.|+.|-....+.. . .........|..++.. ..+.+.-+
T Consensus 176 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------~--~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ-----------------I--GTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-----------------E--EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEECCCEEEEEcCCCCEEEEecccCcce-----------------e--eEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 4468888887777777788999999975422110 0 0001123456666554 33455556
Q ss_pred cCCcEEEecCCCCCCCccCcccce-Ee-eCCCCeeEEEECC--ceEEEEe---cCCcEEEEecCCCCCCCCCCCCCCccc
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPV-RV-QGLEQVKLIAVGA--FHNLALQ---EDGALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~-~i-~~~~~i~~i~~g~--~~~~~l~---~~g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
.+|.|+.|-... ..+. .+ .....|..++... ...++.. .+|.|+.|-.... ...
T Consensus 237 ~d~~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----------~~~ 297 (401)
T 4aez_A 237 NDNVVQIWDARS--------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----------ARV 297 (401)
T ss_dssp TTSCEEEEETTC--------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----------CEE
T ss_pred CCCeEEEccCCC--------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----------CEE
Confidence 789999997541 1111 11 2235677776643 2333332 4788888854321 011
Q ss_pred eeeccCCCCcEEEEEecCCeEEEE--e--cCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEcc--CCe
Q 038610 224 IPVQGLSGLTLVDIAAGGWHSTAL--T--DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG--GTH 297 (374)
Q Consensus 224 ~~~~~~~~~~i~~i~~G~~~~~~l--t--~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~ 297 (374)
..+. ....|..++...+...++ . .+|.|+.|-.... .......+.. ....|..++.. ..+
T Consensus 298 ~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-----------~~~~~~~~~~-h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 298 NTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-----------GLTKQVDIPA-HDTRVLYSALSPDGRI 363 (401)
T ss_dssp EEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-----------EEEEEEEEEC-CSSCCCEEEECTTSSE
T ss_pred EEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-----------cceeEEEecC-CCCCEEEEEECCCCCE
Confidence 1111 124566666544332222 2 5788888873211 0000011111 12345544443 344
Q ss_pred EEEEecCCCEEEEeCCC
Q 038610 298 SVALTRDGHIFSFGRGD 314 (374)
Q Consensus 298 ~~~lt~~g~vy~~G~n~ 314 (374)
.+.-..+|.|..|--..
T Consensus 364 l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 364 LSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEECTTSEEEEEECCC
T ss_pred EEEEeCCCcEEEEECCC
Confidence 45556788899986643
No 25
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.21 E-value=20 Score=30.42 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=12.3
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|+++.. +++||++|-
T Consensus 239 ~~~~~~~~-~~~i~v~GG 255 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAG 255 (306)
T ss_dssp SCCEEEEE-TTEEEEEEC
T ss_pred cceeEEEE-CCEEEEEeC
Confidence 35666655 779999985
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=82.89 E-value=26 Score=31.48 Aligned_cols=188 Identities=9% Similarity=0.041 Sum_probs=114.1
Q ss_pred CCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecCC
Q 038610 74 TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREG 153 (374)
Q Consensus 74 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g 153 (374)
..|..++......+.-..||.|..|-.... ++ ..........|..+.......+.-+.+|
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~-------------------~~~~~~h~~~v~~~~~~~~~l~s~s~dg 219 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETG-EC-------------------IHTLYGHTSTVRCMHLHEKRVVSGSRDA 219 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTT-EE-------------------EEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCcC-cE-------------------EEEECCCCCcEEEEEecCCEEEEEeCCC
Confidence 467778777777777888999999964321 10 0001112445777777777777788899
Q ss_pred cEEEecCCCCCCCccCcccceEe-eCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCC
Q 038610 154 HVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGL 232 (374)
Q Consensus 154 ~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~ 232 (374)
.|+.|-.... .....+ .....|..++......+.-..+|.|..|-.... .+.........
T Consensus 220 ~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~ 280 (445)
T 2ovr_B 220 TLRVWDIETG-------QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE------------TCLHTLQGHTN 280 (445)
T ss_dssp EEEEEESSSC-------CEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT------------EEEEEECCCSS
T ss_pred EEEEEECCCC-------cEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC------------cEeEEecCCCC
Confidence 9999965411 011111 123567777776677777788899999853221 11111111224
Q ss_pred cEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeC
Q 038610 233 TLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 233 ~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~ 312 (374)
.|..+.....+.+.-..+|.|+.|-...... ...+.. ....+..+.......+.-..+|.|..|-.
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-------------IHTLTG-HQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCCE-------------EEEECC-CCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCCE-------------EEEEcC-CcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 6777877667777778899999997532211 111111 12456666666666677778899999976
Q ss_pred CC
Q 038610 313 GD 314 (374)
Q Consensus 313 n~ 314 (374)
..
T Consensus 347 ~~ 348 (445)
T 2ovr_B 347 KT 348 (445)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 27
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.14 E-value=27 Score=30.31 Aligned_cols=228 Identities=9% Similarity=0.094 Sum_probs=116.1
Q ss_pred CCCCeEEE--eccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC-----CC
Q 038610 72 SNTKIVQA--AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-----GT 144 (374)
Q Consensus 72 ~~~~i~~i--~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g-----~~ 144 (374)
++..++.+ +....+.+++|+.|++|.+-...-=..+...... +...-..+...++|..+... ..
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~---------~i~~~l~l~~~e~i~~~~~~~~~~~~~ 115 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ---------NISELINLGDQEEILTIKNSKDLTDDA 115 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------C---------BGGGTSCCCTTCCEEEEEEESCCCTTC
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc---------ChhhccCCCCCCEEEEEEEeccCCCCC
Confidence 34445553 4567789999999999998754321111111000 11111123346677777654 45
Q ss_pred eEEEEecCCcEEEecCC-CCCCCccCcccceEeeCCCCeeEEEE--CCceEEEEecCCcEEEEecCCCCCCCCCCCCCCc
Q 038610 145 HSVVLTREGHVWTWGQP-WPPGDIKQISVPVRVQGLEQVKLIAV--GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p~~i~~~~~i~~i~~--g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~ 221 (374)
+.+++|++|.++..-.. +.... ..-..-..+.....+..+.. +..+.++++++|++.-+-.++.-.+|....-
T Consensus 116 ~ll~~T~~G~~kr~~l~~~~~~r-~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G--- 191 (312)
T 1suu_A 116 YLLLTTASGKIARFESTDFKAVK-SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG--- 191 (312)
T ss_dssp EEEEEETTSEEEEEEGGGGCC-----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC---
T ss_pred EEEEEeCCCeEEEEEHHHhhccC-CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC---
Confidence 68889999999887543 10000 00000011222245555443 4667889999999998876654333332110
Q ss_pred cceeeccCCCCcEEEEEe--cCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEE--EEccCCe
Q 038610 222 QPIPVQGLSGLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ--VSCGGTH 297 (374)
Q Consensus 222 ~p~~~~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~--i~~G~~~ 297 (374)
-..+....+..|+.+.. ...+.++++++|.+.-.--.++-..+.+.......... ......++. +......
T Consensus 192 -v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~----k~~~~~lv~~~~~~~~~~ 266 (312)
T 1suu_A 192 -VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKS----DKKAGSVVDAIAVSEDDE 266 (312)
T ss_dssp -EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTT----CTTTCSEEEEEEECTTCE
T ss_pred -eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEeeEcc----CCCCCeEEEEEEeCCCCE
Confidence 01111112456666543 34567888999887766655554444432111100000 001123332 2335667
Q ss_pred EEEEecCCCEEEEeCCCCCc
Q 038610 298 SVALTRDGHIFSFGRGDHGR 317 (374)
Q Consensus 298 ~~~lt~~g~vy~~G~n~~gq 317 (374)
.++++..|.+.-.-.++...
T Consensus 267 l~~~t~~g~~~r~~~~~i~~ 286 (312)
T 1suu_A 267 ILLVSKRSKALRTVAGKVSE 286 (312)
T ss_dssp EEEEETTCEEEEEEGGGSCB
T ss_pred EEEEeCCCeEEEEEcccCCc
Confidence 77888888776655544433
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=81.11 E-value=23 Score=29.60 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=102.2
Q ss_pred CCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEe---CCCeEEEE
Q 038610 73 NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA---GGTHSVVL 149 (374)
Q Consensus 73 ~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~---g~~~~~~l 149 (374)
...|..++......+....+|.|+.|-. ++ ...........+..+.. .....+..
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~-------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWKE---GS-------------------LVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEET---TE-------------------EEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc-------------------EEEecccCCCceeEEEEccCCCCEEEEE
Confidence 3468888887777788888999999951 10 01111112334544443 45666777
Q ss_pred ecCCcEEEecCCCCCCCccCcccceEee--CCCCeeEEEEC-CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceee
Q 038610 150 TREGHVWTWGQPWPPGDIKQISVPVRVQ--GLEQVKLIAVG-AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226 (374)
Q Consensus 150 t~~g~v~~~G~~~~~~~~~~~~~p~~i~--~~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~ 226 (374)
..+|.|+.|-.. .....+. ....|..++.. ....++...+|.|+.|-.... .+...
T Consensus 162 ~~d~~i~i~d~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~------------~~~~~ 220 (313)
T 3odt_A 162 SADKTIKLWQND---------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG------------DVLRT 220 (313)
T ss_dssp ETTSCEEEEETT---------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC------------CEEEE
T ss_pred ECCCCEEEEecC---------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch------------hhhhh
Confidence 888999998632 0111111 22456655543 223566678888999864321 11111
Q ss_pred ccCCCCcEEEEEecCC-eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCC-eEEEEecC
Q 038610 227 QGLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT-HSVALTRD 304 (374)
Q Consensus 227 ~~~~~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~ 304 (374)
.......|..++...+ ..++...+|.|+.|-.... .....+... ...|..++...+ ..++-..+
T Consensus 221 ~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 221 YEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------SLKQVITLP-AISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp EECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-------------CEEEEEECS-SSCEEEEEECTTSCEEEEETT
T ss_pred hhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-------------ceeEEEecc-CceEEEEEEccCCCEEEEeCC
Confidence 1112245777766544 4556677889999964221 111222222 245666665433 35566788
Q ss_pred CCEEEEeCC
Q 038610 305 GHIFSFGRG 313 (374)
Q Consensus 305 g~vy~~G~n 313 (374)
|.|+.|-.+
T Consensus 287 g~i~iw~~~ 295 (313)
T 3odt_A 287 NLVRIFSQE 295 (313)
T ss_dssp SCEEEEESC
T ss_pred CcEEEEeCC
Confidence 999999764
No 29
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=81.09 E-value=26 Score=30.09 Aligned_cols=193 Identities=9% Similarity=-0.024 Sum_probs=100.9
Q ss_pred CCCeEEEecc--CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEe--CCC--eE
Q 038610 73 NTKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA--GGT--HS 146 (374)
Q Consensus 73 ~~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~--g~~--~~ 146 (374)
...|..++.. ....+....||.|..|-.... + ... .......|..+.. ..+ +.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~-----------------~~~---~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-Q-----------------AIQ---IAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-E-----------------EEE---EEECSSCEEEEEEEECSSCEEE
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC-C-----------------cee---eccccCceEEEEEEeCCCCCEE
Confidence 3457777754 335566677899999965421 1 000 1112455777765 333 34
Q ss_pred EEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceee
Q 038610 147 VVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226 (374)
Q Consensus 147 ~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~ 226 (374)
+.-..+|.|+.|-.... .....+.....+..+..-....++...++.++.|-...... ....+
T Consensus 145 ~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~ 207 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSS-------NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRI 207 (368)
T ss_dssp EEEETTSEEEEECSSCS-------SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEEC
T ss_pred EEccCCCcEEEEECCCC-------cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhc
Confidence 45567899999965411 11222333355666666677778888889999886533111 01111
Q ss_pred ccCCC--CcEEEEEecCCe----EEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC-----------CCcEE
Q 038610 227 QGLSG--LTLVDIAAGGWH----STALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-----------GEDIV 289 (374)
Q Consensus 227 ~~~~~--~~i~~i~~G~~~----~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~-----------~~~i~ 289 (374)
..... ..+..+...... .++-..+|.|..|-...... ......+.... ...|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP----------AKDNFTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH----------HHHSEEEECSEEC----CCCEEECCEE
T ss_pred cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc----------cccceeeeeeecccccccccccccceE
Confidence 11111 223333333332 56667889999997543210 00001111100 01466
Q ss_pred EEEccC--CeEEEEecCCCEEEEeCC
Q 038610 290 QVSCGG--THSVALTRDGHIFSFGRG 313 (374)
Q Consensus 290 ~i~~G~--~~~~~lt~~g~vy~~G~n 313 (374)
.++... ...+.-..+|.|+.|-..
T Consensus 278 ~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEEecCCCEEEEEccCCeEEEEECC
Confidence 666543 345555678999999754
No 30
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.20 E-value=29 Score=30.10 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=114.6
Q ss_pred CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEE--EEeCCCeEEEEecCCcEEEecC
Q 038610 83 GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQ--VAAGGTHSVVLTREGHVWTWGQ 160 (374)
Q Consensus 83 ~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~--i~~g~~~~~~lt~~g~v~~~G~ 160 (374)
....+++|.+|.+-..-...+-....+... ..-..+.....+.. ++.+.++.+++|+.|++|.+-.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g------------~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~ 75 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG------------LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINA 75 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC------------EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC------------ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEH
Confidence 445788899998877654443222111000 00001112223333 4556778899999999999764
Q ss_pred C-CCCCCc----cCcccceEeeCCCCeeEEEEC-----CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCC
Q 038610 161 P-WPPGDI----KQISVPVRVQGLEQVKLIAVG-----AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLS 230 (374)
Q Consensus 161 ~-~~~~~~----~~~~~p~~i~~~~~i~~i~~g-----~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~ 230 (374)
. ...... .....-..+...+.|..+... ..+.+++|++|.++-.--.++-... ..--..+....
T Consensus 76 ~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r------~~G~~~i~L~~ 149 (312)
T 1suu_A 76 YEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK------SRGVIVIKLND 149 (312)
T ss_dssp GGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----------CEECBCCCT
T ss_pred HHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC------CCcEEEEecCC
Confidence 3 111100 011111123333667776554 4568889999999988765541110 00001111112
Q ss_pred CCcEEEEEe--cCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEc--cCCeEEEEecCCC
Q 038610 231 GLTLVDIAA--GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHSVALTRDGH 306 (374)
Q Consensus 231 ~~~i~~i~~--G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~ 306 (374)
+..++.+.. +..+.+++|++|.+.-+-..+.-..|..... -..+....+..|+.+.. ...+.++++++|.
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G------v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~ 223 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG------VCGMKLKEGDLFVKVLSVKENPYLLIVSENGY 223 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC------EECCCCCTTCCEEEEEECTTCSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC------eEeEEeCCCCEEEEEEEECCCCeEEEEECCCc
Confidence 356666544 4567889999999888876554344332210 11122223455665543 3456788899998
Q ss_pred EEEEeCCCCCccCCC
Q 038610 307 IFSFGRGDHGRLGYG 321 (374)
Q Consensus 307 vy~~G~n~~gqLG~g 321 (374)
+...--+++-..+.+
T Consensus 224 ~kr~~~~e~~~~~R~ 238 (312)
T 1suu_A 224 GKRLNMSKISELKRG 238 (312)
T ss_dssp EEEEEGGGSCBCCTT
T ss_pred eEEEEHHHhcccCCC
Confidence 877777666555554
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=79.58 E-value=31 Score=30.15 Aligned_cols=211 Identities=10% Similarity=0.039 Sum_probs=102.0
Q ss_pred CCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeeccccccccc-CCCCcEEEEEeCC--------
Q 038610 73 NTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRC-APKLIVRQVAAGG-------- 143 (374)
Q Consensus 73 ~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~-~~~~~i~~i~~g~-------- 143 (374)
...|..|+......+.-..||.|+.|-...... .. .......+ .....|..++...
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~----~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN----EN-----------PKDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTT----CC-----------GGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCccc----cc-----------CCCcceEEecCCCcEEEEEEecccccCCcc
Confidence 346888887777777778899999997543210 00 00111111 1244566665443
Q ss_pred -CeEEEEecCCcEEEecCCCCCCCccCcccceEeeCC------CCeeEEEEC------Cce-EEEEecCCcEEEEecCCC
Q 038610 144 -THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGL------EQVKLIAVG------AFH-NLALQEDGALWAWGNNEY 209 (374)
Q Consensus 144 -~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~------~~i~~i~~g------~~~-~~~l~~~g~v~~~G~n~~ 209 (374)
.+.+....+|.|+.|-...... ........+... ..|..++.. ... .++...+|.|+.|-....
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDE--TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTT--TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred ccEEEEEcCCCCEEEEEccCCcc--cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 3445556789999986541110 000002222222 557666655 344 555568899999865430
Q ss_pred CCCCCCCCCCCccce-eec------cCCCCcEEEEEecCC-eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEee
Q 038610 210 GQLGTGDTQPRSQPI-PVQ------GLSGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVN 281 (374)
Q Consensus 210 gqlG~~~~~~~~~p~-~~~------~~~~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~ 281 (374)
..-+.+. .....|. .+. ......|..++...+ ..++-..+|.|+.|-.... .....+.
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~ 224 (397)
T 1sq9_A 159 ADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-------------RPLYNFE 224 (397)
T ss_dssp SSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-------------EEEEEEE
T ss_pred ccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-------------ceeEEEe
Confidence 0000000 0011111 111 112244555555443 3334456788988874321 0111111
Q ss_pred cC--C---CCcEEEEEcc--CCeEEEEecC---CCEEEEeCCC
Q 038610 282 LL--A---GEDIVQVSCG--GTHSVALTRD---GHIFSFGRGD 314 (374)
Q Consensus 282 ~~--~---~~~i~~i~~G--~~~~~~lt~~---g~vy~~G~n~ 314 (374)
.. . ...|..++.. ..+.++-..+ |.|+.|-...
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred ccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 10 1 3456666553 3344444566 7888887643
No 32
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=77.08 E-value=4.5 Score=34.59 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=12.2
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|++++. +++||++|-
T Consensus 245 ~~~~~~~~-~~~i~v~GG 261 (301)
T 2vpj_A 245 CYVGATVL-RGRLYAIAG 261 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEEcC
Confidence 35666555 789999985
No 33
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.71 E-value=7.4 Score=33.54 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=12.5
Q ss_pred CceEEEEecCCcEEEEecC
Q 038610 189 AFHNLALQEDGALWAWGNN 207 (374)
Q Consensus 189 ~~~~~~l~~~g~v~~~G~n 207 (374)
..|+++. .+++||++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 3555555 67799999853
No 34
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=73.48 E-value=48 Score=29.21 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=80.6
Q ss_pred EeccCceeEEE---eCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CCeEEEEecC
Q 038610 79 AAIGGWHCLAV---DDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHSVVLTRE 152 (374)
Q Consensus 79 i~~G~~~~~~l---t~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~~~lt~~ 152 (374)
+++......++ ..+|.|+.|-....|.+.. ..+........|..++.. ....+.-..+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~----------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d 103 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK----------------NVPLVCGHTAPVLDIAWCPHNDNVIASGSED 103 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT----------------TCCCBCCCSSCEEEEEECTTCTTEEEEEETT
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC----------------CCceEecCCCCEEEEEeCCCCCCEEEEEeCC
Confidence 45555554444 4579999998655443311 111111124567777764 3455555778
Q ss_pred CcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECCc---eEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeec-
Q 038610 153 GHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGAF---HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ- 227 (374)
Q Consensus 153 g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~- 227 (374)
|.|..|-................+. ....|..++...+ ..+.-..+|.|+.|-.... .....+.
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~ 172 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-----------AAVLTLGP 172 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-----------EEEEEECT
T ss_pred CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-----------CccEEEec
Confidence 9999997652211100001112222 2366777776543 4445567899999954321 1111111
Q ss_pred cCCCCcEEEEEecC--CeEEEEecCCCEEEEeC
Q 038610 228 GLSGLTLVDIAAGG--WHSTALTDDGEVYGWGR 258 (374)
Q Consensus 228 ~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~ 258 (374)
......|..++... ...+.-..+|.|+.|--
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 11224577776643 34455567888999974
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=73.45 E-value=40 Score=28.36 Aligned_cols=181 Identities=10% Similarity=0.019 Sum_probs=93.4
Q ss_pred CeEEEecc--CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEEEEe
Q 038610 75 KIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSVVLT 150 (374)
Q Consensus 75 ~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~~lt 150 (374)
.|..++.. ..+.+....+|.|+.|-.... + ... ........|..++.. ..+.+..+
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~-----------------~~~--~~~~~~~~i~~~~~~~~~~~l~~~~ 202 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-T-----------------LVR--QFQGHTDGASCIDISNDGTKLWTGG 202 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT-E-----------------EEE--EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-c-----------------eee--eeecccCceEEEEECCCCCEEEEEe
Confidence 46666543 445666667899999864321 0 000 000123456666654 33555667
Q ss_pred cCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeecc
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQG 228 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~ 228 (374)
.+|.|+.|-.... .....+.....+..++.. ....++-..+|.|+.|-..... ...+.
T Consensus 203 ~dg~i~~~d~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~- 262 (337)
T 1gxr_A 203 LDNTVRSWDLREG-------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLH- 262 (337)
T ss_dssp TTSEEEEEETTTT-------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEEC-
T ss_pred cCCcEEEEECCCC-------ceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEc-
Confidence 8899999965411 111122333556666653 3344455667888888543210 11111
Q ss_pred CCCCcEEEEEecC--CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEcc--CCeEEEEecC
Q 038610 229 LSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG--GTHSVALTRD 304 (374)
Q Consensus 229 ~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~ 304 (374)
.....|..++... ...+....+|.|+.|-......+ .... ....|..++.. ....++-..+
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-------------~~~~--~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-------------FQSK--ESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEEE--CSSCEEEEEECTTSCEEEEEETT
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-------------EEec--CCCcEEEEEECCCCCEEEEecCC
Confidence 1124577776653 34555567888999974321110 1111 12455555443 3344445577
Q ss_pred CCEEEE
Q 038610 305 GHIFSF 310 (374)
Q Consensus 305 g~vy~~ 310 (374)
|.|+.|
T Consensus 328 g~i~iw 333 (337)
T 1gxr_A 328 KKATVY 333 (337)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 777777
No 36
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=73.33 E-value=42 Score=28.47 Aligned_cols=202 Identities=11% Similarity=-0.076 Sum_probs=105.3
Q ss_pred CCeEEEecc--CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CC-eEEE
Q 038610 74 TKIVQAAIG--GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GT-HSVV 148 (374)
Q Consensus 74 ~~i~~i~~G--~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~-~~~~ 148 (374)
..|..++.. ....++-..+|.|+.|-...... .............|..++.. .. +.++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 74 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----------------NVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----------------EEEEEEEEECSSCEEEEEEEESSSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----------------cccceeeeecCCceEEEEECCCCCcEEEE
Confidence 356666644 33455556789998886432210 00000011123445555543 44 5666
Q ss_pred EecCCcEEEecC-CCCCCCccCcccceEee---CCCCeeEEEEC-CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccc
Q 038610 149 LTREGHVWTWGQ-PWPPGDIKQISVPVRVQ---GLEQVKLIAVG-AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 149 lt~~g~v~~~G~-~~~~~~~~~~~~p~~i~---~~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
-..+|.|+.|-. ... ....+. ....|..++.. ....+....+|.|+.|-...+.. ........+
T Consensus 75 ~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~ 143 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLN 143 (342)
T ss_dssp EETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESC
T ss_pred EcCCCeEEEEEeccCC--------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCe
Confidence 678899999965 311 112222 23556666654 45666667888999985322100 000000000
Q ss_pred eeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccC---CeEEE
Q 038610 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG---THSVA 300 (374)
Q Consensus 224 ~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~~~~~ 300 (374)
..... ....|..++...+..++.+.+|.|+.|-....+.. ............|..|+... ...++
T Consensus 144 ~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 211 (342)
T 1yfq_A 144 SNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-----------NGTIEESGLKYQIRDVALLPKEQEGYAC 211 (342)
T ss_dssp SSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-----------CCEEEECSCSSCEEEEEECSGGGCEEEE
T ss_pred eeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-----------cceeeecCCCCceeEEEECCCCCCEEEE
Confidence 00001 22568888887777777788999999985431110 11112222224566665543 45555
Q ss_pred EecCCCEEEEeCCCC
Q 038610 301 LTRDGHIFSFGRGDH 315 (374)
Q Consensus 301 lt~~g~vy~~G~n~~ 315 (374)
-..+|.+..|=.+..
T Consensus 212 ~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 212 SSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EETTSEEEEEECCTT
T ss_pred EecCCcEEEEEEcCC
Confidence 567888988876543
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=72.65 E-value=45 Score=28.50 Aligned_cols=160 Identities=9% Similarity=0.001 Sum_probs=83.2
Q ss_pred CCeEEEeccCc------eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CC
Q 038610 74 TKIVQAAIGGW------HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GT 144 (374)
Q Consensus 74 ~~i~~i~~G~~------~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~ 144 (374)
..|..++.... ..+.-..+|.|..|-.... + ... ........|..+... ..
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~-----------------~~~--~~~~~~~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-Q-----------------CIK--HYVGHGNAINELKFHPRDPN 129 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-C-----------------EEE--EEESCCSCEEEEEECSSCTT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-e-----------------Eee--eecCCCCcEEEEEECCCCCC
Confidence 35666665433 5566668899999964321 1 000 001124567777664 34
Q ss_pred eEEEEecCCcEEEecCCCCCCCccCcccceEe----eCCCCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCC-----
Q 038610 145 HSVVLTREGHVWTWGQPWPPGDIKQISVPVRV----QGLEQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLG----- 213 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i----~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG----- 213 (374)
..+.-..+|.|+.|-.... .....+ .....|..++.. ....+....+|.|+.|-......+.
T Consensus 130 ~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 202 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTD-------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES 202 (366)
T ss_dssp EEEEEETTSCEEEEETTTT-------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH
T ss_pred EEEEEeCCCeEEEEEeecC-------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee
Confidence 5566678899999975411 111111 122567777764 3455556678999999654311100
Q ss_pred --CCC--CCCCcc-------ceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCC
Q 038610 214 --TGD--TQPRSQ-------PIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGE 260 (374)
Q Consensus 214 --~~~--~~~~~~-------p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~ 260 (374)
... ...... ...........|..++......+.-..+|.|..|-...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred EEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 000 000000 00000112244555655566667777889999998543
No 38
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=71.23 E-value=56 Score=29.07 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=70.3
Q ss_pred ccCCCCeEEE--eccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC-----
Q 038610 70 ALSNTKIVQA--AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG----- 142 (374)
Q Consensus 70 ~~~~~~i~~i--~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g----- 142 (374)
...+..+..+ +.+..+.+++|+.|++|.+-...-=..|..... . +...-..+...++|+.+..-
T Consensus 42 lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G-------~--~i~~ll~L~~~e~Iv~~~~~~~~~~ 112 (370)
T 3l6v_A 42 TKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG-------R--PIINWIPLESGERVQAVLPVREYAD 112 (370)
T ss_dssp CSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-------E--EGGGSCCCCTTCCEEEEEEESCCCT
T ss_pred cCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC-------c--CHhhccCCCCCCEEEEEEEeccCCC
Confidence 3344455544 455666888999999999875432222211110 0 11111113346778877653
Q ss_pred CCeEEEEecCCcEEEecCC-CCCCCccCcccceEeeCCCCeeEE--EECCceEEEEecCCcEEEEecCCCCCCC
Q 038610 143 GTHSVVLTREGHVWTWGQP-WPPGDIKQISVPVRVQGLEQVKLI--AVGAFHNLALQEDGALWAWGNNEYGQLG 213 (374)
Q Consensus 143 ~~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p~~i~~~~~i~~i--~~g~~~~~~l~~~g~v~~~G~n~~gqlG 213 (374)
..+.+++|++|.+.-.-.. +.... ..-..-..+.....+..+ ..+....++++++|++.-+-...--.+|
T Consensus 113 ~~~ll~~T~~G~vKrt~l~e~~~~~-~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 113 NRYVFMATRNGTVKKTPLSEFAFRL-ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp TCEEEEEETTSEEEEEEGGGGCSCC-TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CcEEEEEeCCCeEEEeEHHHhhccc-CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 3477888999987765432 11000 000000111122334333 2466789999999999887655443333
No 39
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=70.32 E-value=55 Score=28.55 Aligned_cols=161 Identities=12% Similarity=0.078 Sum_probs=91.2
Q ss_pred EEeCCCeEEEEecCCcEEEecCC-CCCCCccCcccc----eEeeCCCCeeEEEECC-----ceEEEEecCCcEEEEecCC
Q 038610 139 VAAGGTHSVVLTREGHVWTWGQP-WPPGDIKQISVP----VRVQGLEQVKLIAVGA-----FHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 139 i~~g~~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p----~~i~~~~~i~~i~~g~-----~~~~~l~~~g~v~~~G~n~ 208 (374)
.+...++.+++|+.|++|..--. .........-.| ..+...++|..+.+.. ...+++|.+|.+.-.-...
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 44567778889999999987643 221111111111 1233347788776653 4678889999888765444
Q ss_pred CCCCCCCCCCCCccceeeccCCCCcEEEE--EecCCeEEEEecCCCEEEEeCC--CCCCCCCCCCCCCccccceEeecCC
Q 038610 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDI--AAGGWHSTALTDDGEVYGWGRG--EHGRLGFGDNDKSSKMVPQKVNLLA 284 (374)
Q Consensus 209 ~gqlG~~~~~~~~~p~~~~~~~~~~i~~i--~~G~~~~~~lt~~g~vy~wG~n--~~gqlG~~~~~~~~~~~p~~v~~~~ 284 (374)
|-.. .......+....+..++.+ ..+..+.+++|++|++|-+--. +--..|.... - . ..+.+..
T Consensus 129 ~~~~------~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~--G---v-~~i~L~~ 196 (327)
T 3uc1_A 129 FDSN------RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS--G---V-QGMRFNI 196 (327)
T ss_dssp GCCC------CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB--C---E-ESSCCCT
T ss_pred hhcc------ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC--C---e-eeecCCC
Confidence 3211 0111111111123455544 3456788899999999998876 4444443321 1 0 1233444
Q ss_pred CCcEEEEEccC--CeEEEEecCCCEEEEe
Q 038610 285 GEDIVQVSCGG--THSVALTRDGHIFSFG 311 (374)
Q Consensus 285 ~~~i~~i~~G~--~~~~~lt~~g~vy~~G 311 (374)
+..|+.+..-. .+.+++|++|.+.-.=
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 56777776543 4677888888666554
No 40
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=69.89 E-value=55 Score=28.45 Aligned_cols=232 Identities=11% Similarity=-0.010 Sum_probs=116.0
Q ss_pred CCCCeEE--EeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC-----CC
Q 038610 72 SNTKIVQ--AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-----GT 144 (374)
Q Consensus 72 ~~~~i~~--i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g-----~~ 144 (374)
++..+.. ++....+.+++|+.|++|..-...-=..+..... . ++..-..+...++|..+..- ..
T Consensus 37 e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-------~--~i~~~i~L~~~e~Iv~~~~~~~~~~~~ 107 (323)
T 1wp5_A 37 DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-------Q--HIANIIPIDRDEEIIKAIPINDFELNG 107 (323)
T ss_dssp TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-------E--EGGGTSCCCTTCCEEEEEEESCTTSSC
T ss_pred CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-------c--ChhhccCCCCCCEEEEEEEecccCCCc
Confidence 4444544 4566788999999999999975442222211110 0 11111123346667765443 23
Q ss_pred eEEEEecCCcEEEecCC-CCCCCccCcccceEeeCCCCeeEEE--ECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCc
Q 038610 145 HSVVLTREGHVWTWGQP-WPPGDIKQISVPVRVQGLEQVKLIA--VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p~~i~~~~~i~~i~--~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~ 221 (374)
+.+++|++|.+.-.-.. +.......-..-..+.....+..+. .+.++.++++++|+++-+-.+..-.+|...
T Consensus 108 ~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a----- 182 (323)
T 1wp5_A 108 YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA----- 182 (323)
T ss_dssp EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC-----
T ss_pred eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCC-----
Confidence 67888999987765432 0000000000000111123444432 367789999999999998876544444311
Q ss_pred cceeecc-CCCCcEEEEEec--CC-eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEE--EEccC
Q 038610 222 QPIPVQG-LSGLTLVDIAAG--GW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ--VSCGG 295 (374)
Q Consensus 222 ~p~~~~~-~~~~~i~~i~~G--~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~--i~~G~ 295 (374)
...+... ..++.|+.+..- .. ..+++|++|...-.--.++-.-+.+. .-...+...+. .+..+.. +..+.
T Consensus 183 ~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~---kGv~~~~~~~~-~~~~l~~~~~v~~~ 258 (323)
T 1wp5_A 183 AGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK---RGVVILRELKA-NPHRISGFVVAQDS 258 (323)
T ss_dssp CCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS---CCEECSCCCSS-SCCCEEEEEEECTT
T ss_pred cCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC---CCEECeeecCC-CCceEEEEEEeCCC
Confidence 1112111 234566666431 22 56677777754333323322222211 11111111111 1123432 23457
Q ss_pred CeEEEEecCCCEEEEeCCCCCccCCC
Q 038610 296 THSVALTRDGHIFSFGRGDHGRLGYG 321 (374)
Q Consensus 296 ~~~~~lt~~g~vy~~G~n~~gqLG~g 321 (374)
+..++++++|++.-.--++-...|..
T Consensus 259 ~~i~~it~~g~~ir~~~~~i~~~~R~ 284 (323)
T 1wp5_A 259 DTIYLQTEKSFIETIKVGDIRFSDRY 284 (323)
T ss_dssp CEEEEEETTSCEEEEEGGGSCBCCSS
T ss_pred CeEEEEeCCCeEEEEEhhhcCccCcc
Confidence 78889999999888776665555543
No 41
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=68.35 E-value=58 Score=28.05 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=113.2
Q ss_pred CCCeEE--EeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEe-----CCCe
Q 038610 73 NTKIVQ--AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA-----GGTH 145 (374)
Q Consensus 73 ~~~i~~--i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~-----g~~~ 145 (374)
+..+.. ++....+.++.|+.|++|.+-...-=..+..... . +...-..+...++|..+.. ...+
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G-------~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ 111 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG-------R--PIVNLLPLEQDERITAILPVTEFEEGVK 111 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC-------E--EGGGTSCCCTTCCEEEEEEESCCCTTCE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC-------e--EhhhccCCCCCCEEEEEEEeccCCCCcE
Confidence 344544 4566788999999999999976542222211110 0 1111111334667777654 2345
Q ss_pred EEEEecCCcEEEecCC-CCCCCccCcccceEeeCCCCeeEEE--ECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCcc
Q 038610 146 SVVLTREGHVWTWGQP-WPPGDIKQISVPVRVQGLEQVKLIA--VGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222 (374)
Q Consensus 146 ~~~lt~~g~v~~~G~~-~~~~~~~~~~~p~~i~~~~~i~~i~--~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 222 (374)
.+++|++|.+.-.-.. +.... ..-..-..+.....+..+. .+..+.+++|++|+++-+-..+.-.+|....-
T Consensus 112 ll~~T~~G~~Krt~l~e~~~~~-r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G---- 186 (307)
T 1zi0_A 112 VFMATANGTVKKTVLTEFNRLR-TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG---- 186 (307)
T ss_dssp EEEEETTSEEEEEEGGGGTTCC-TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC----
T ss_pred EEEEeCCCeEEEEEHHHhhccc-cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC----
Confidence 7788999987765332 00000 0000001111123444433 35678899999999998876654444432111
Q ss_pred ceeeccCCCCcEEEEEec--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEc--cCCeE
Q 038610 223 PIPVQGLSGLTLVDIAAG--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--GGTHS 298 (374)
Q Consensus 223 p~~~~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~ 298 (374)
...+....++.|+.+..- ....+++|++|.+--.--.++-.-+.+.. -...+. +.. ....++.+.. .....
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k---G~~~~~-~~~-~~~~lv~~~~v~~~~~l 261 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK---GVISIK-VTE-RNGLVVGAVQVDDCDQI 261 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC---CEESSC-CCT-TTCSEEEEEEECTTCEE
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC---CEEeeE-ecC-CCCeEEEEEEeCCCceE
Confidence 111222234677776542 23466777777544332222221111110 000111 110 1134444333 56678
Q ss_pred EEEecCCCEEEEeCCCCCccC
Q 038610 299 VALTRDGHIFSFGRGDHGRLG 319 (374)
Q Consensus 299 ~~lt~~g~vy~~G~n~~gqLG 319 (374)
+++|++|++.-+-.++-...|
T Consensus 262 ~~~t~~g~~ir~~~~~i~~~~ 282 (307)
T 1zi0_A 262 MMITDAGTLVRTRVSEISIVG 282 (307)
T ss_dssp EEEESSCCEEEEEGGGSCBCC
T ss_pred EEEcCCCcEEEEecccccccC
Confidence 899999998877665543333
No 42
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.82 E-value=58 Score=27.54 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=106.8
Q ss_pred CCcceEEEecCCCeeeee---cC----eeecccCCCCeEEEecc---CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCC
Q 038610 46 GSRNSLAICDDGKTKTEN---IP----SQVNALSNTKIVQAAIG---GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDD 115 (374)
Q Consensus 46 g~~~~~~l~~~g~~~~~~---~p----~~~~~~~~~~i~~i~~G---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~ 115 (374)
..++.+++++.|+..... +| ..+ ...+++|+.+.+- ....+++|++|.+.-.-...+-+-..+
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G------ 106 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQG------ 106 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTT------
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC------
Confidence 346688999999922211 11 114 4467889998761 246889999999988875544210000
Q ss_pred CcceeecccccccccCCCCcEEEEEe--CCCeEEEEecCCcEEEecCC-CCCCCccCccc-ceEeeCCCCeeEEEEC--C
Q 038610 116 TGRILRRDIVIPQRCAPKLIVRQVAA--GGTHSVVLTREGHVWTWGQP-WPPGDIKQISV-PVRVQGLEQVKLIAVG--A 189 (374)
Q Consensus 116 ~~~~~~~~~~~p~~~~~~~~i~~i~~--g~~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~-p~~i~~~~~i~~i~~g--~ 189 (374)
..-..+.....+..+.. +..+.+++|++|++|.+-.. .....-...-. -..+...+.|..+... .
T Consensus 107 ---------~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~ 177 (276)
T 3no0_A 107 ---------MPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGE 177 (276)
T ss_dssp ---------EECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSC
T ss_pred ---------eEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCC
Confidence 00111112334444333 45578899999999998644 10000000000 0122233566665543 3
Q ss_pred ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEE--ecCCeEEEEecCCCEEE--EeCCCCCCCC
Q 038610 190 FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA--AGGWHSTALTDDGEVYG--WGRGEHGRLG 265 (374)
Q Consensus 190 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~--~G~~~~~~lt~~g~vy~--wG~n~~gqlG 265 (374)
...++++++|.+.-.-..++-..+.+..-.. .+ ..+.+++.+. .+....+++|++|++.- +--++.-..|
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~----~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTE----VS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTCCCEE----CC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCCcceE----EE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 4677888999887776555433322211000 01 1224455443 34567889999999888 7655444444
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=66.48 E-value=73 Score=28.55 Aligned_cols=258 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCCeeeeecC----------------
Q 038610 2 ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP---------------- 65 (374)
Q Consensus 2 ~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~~~~~~p---------------- 65 (374)
..||.|..|=....-.+..-..........--...+..-.-++++.+..+.+-+-.........
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Q ss_pred ---eeecccCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC
Q 038610 66 ---SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG 142 (374)
Q Consensus 66 ---~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g 142 (374)
..........+..++......+.-..||.|..|-... .............|..++..
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~--------------------~~~~~~~~~~~~~v~~~~~~ 319 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ--------------------MKCLYILSGHTDRIYSTIYD 319 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT--------------------TEEEEEECCCSSCEEEEEEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC--------------------CcEEEEecCCCCCEEEEEEc
Q ss_pred CC--eEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCC
Q 038610 143 GT--HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220 (374)
Q Consensus 143 ~~--~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~ 220 (374)
.+ ..+.-..+|.|+.|-.. ........-.....|..++....+.+.-..+|.|..| +....
T Consensus 320 ~~~~~l~sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vw-----------d~~~~ 382 (464)
T 3v7d_B 320 HERKRCISASMDTTIRIWDLE------NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW-----------DANDY 382 (464)
T ss_dssp TTTTEEEEEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEE-----------ETTTC
T ss_pred CCCCEEEEEeCCCcEEEEECC------CCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEE-----------ECCCC
Q ss_pred ccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEE
Q 038610 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA 300 (374)
Q Consensus 221 ~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~ 300 (374)
.............+..+.......+.-. +|.|+.|- .................|..|+.-....++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd-------------~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~ 448 (464)
T 3v7d_B 383 SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN-------------LRSGKLVHANILKDADQIWSVNFKGKTLVA 448 (464)
T ss_dssp CEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE-------------TTTCCEEESCTTTTCSEEEEEEEETTEEEE
T ss_pred ceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE-------------CCCCcEEehhhccCCCcEEEEEecCCEEEE
Q ss_pred EecCCCEEEE
Q 038610 301 LTRDGHIFSF 310 (374)
Q Consensus 301 lt~~g~vy~~ 310 (374)
-..++....|
T Consensus 449 ~~~~~g~~~i 458 (464)
T 3v7d_B 449 AVEKDGQSFL 458 (464)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCeEEE
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=66.44 E-value=60 Score=27.55 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCcEEEEEeCC-----CeEEEEecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEE--------CCceEEEEecC
Q 038610 133 KLIVRQVAAGG-----THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAV--------GAFHNLALQED 198 (374)
Q Consensus 133 ~~~i~~i~~g~-----~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~--------g~~~~~~l~~~ 198 (374)
...|..++... ...+.-..+|.|..|-...... ....+. ....|..+.. .....+.-..+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------cEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence 44567776654 3445556789999997652110 111121 2255666632 23355556678
Q ss_pred CcEEEEecCCCCCCCCCCCCCCccceeec---cCCCCcEEEEE------ecCCeEEEEecCCCEEEEeCCCCCCCCCCCC
Q 038610 199 GALWAWGNNEYGQLGTGDTQPRSQPIPVQ---GLSGLTLVDIA------AGGWHSTALTDDGEVYGWGRGEHGRLGFGDN 269 (374)
Q Consensus 199 g~v~~~G~n~~gqlG~~~~~~~~~p~~~~---~~~~~~i~~i~------~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 269 (374)
|.|..|-...... ....+. ......+..+. ......++-..+|.|+.|-.....
T Consensus 139 ~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------- 201 (357)
T 3i2n_A 139 GTVKVWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA------- 201 (357)
T ss_dssp SCEEEECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------
T ss_pred CeEEEEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------
Confidence 8999985432110 111111 11123566665 233445555677899999743210
Q ss_pred CCCccccceEeecCCCCcEEEEEcc-----CCeEEEEecCCCEEEEeCC
Q 038610 270 DKSSKMVPQKVNLLAGEDIVQVSCG-----GTHSVALTRDGHIFSFGRG 313 (374)
Q Consensus 270 ~~~~~~~p~~v~~~~~~~i~~i~~G-----~~~~~~lt~~g~vy~~G~n 313 (374)
+..... ....|..+... ....++-..+|.|+.|-..
T Consensus 202 -------~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 202 -------LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp -------EEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred -------eeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 111111 12455555554 2444555567888887643
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=66.15 E-value=61 Score=27.56 Aligned_cols=158 Identities=8% Similarity=-0.035 Sum_probs=75.0
Q ss_pred CeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEEEEe
Q 038610 75 KIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSVVLT 150 (374)
Q Consensus 75 ~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~~lt 150 (374)
.|..++... ...+.-..+|.|+.|-......+ .........|..++.. ..+.+...
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--------------------~~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--------------------GTLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--------------------EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--------------------hhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 566666543 34444567899999954321100 0001123456666654 34556667
Q ss_pred cCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECC--ceEEEEecC-----CcEEEEecCCCCCCCCCCCCCCccc
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA--FHNLALQED-----GALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~--~~~~~l~~~-----g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
.+|.|+.|-.... .....+.....|..++... ...++...+ |.|+.|-.........-........
T Consensus 94 ~dg~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 94 ADYSIKLWDVSNG-------QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp TTTEEEEEETTTC-------CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred CCCeEEEEECCCC-------cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 8899999965411 1111222335566665543 333444444 7777776443221110000000001
Q ss_pred eeecc-CCCCcEEEEEecC--CeEEEEecCCCEEEEeCC
Q 038610 224 IPVQG-LSGLTLVDIAAGG--WHSTALTDDGEVYGWGRG 259 (374)
Q Consensus 224 ~~~~~-~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n 259 (374)
..+.. .....+..++... ...++-..+|.|+.|-..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 11111 1112455554433 345555678889998743
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=65.77 E-value=69 Score=28.00 Aligned_cols=199 Identities=8% Similarity=0.025 Sum_probs=94.0
Q ss_pred CCeEEEecc---CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC---CeEE
Q 038610 74 TKIVQAAIG---GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG---THSV 147 (374)
Q Consensus 74 ~~i~~i~~G---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~---~~~~ 147 (374)
..|..++.. ....+.-..||.|+.|-............ .............|..++... ...+
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT-----------PLTPGQSMSSVDEVISLAWNQSLAHVFA 182 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC-----------CBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc-----------ccccccccCCCCCeeEEEeCCCCCcEEE
Confidence 356666653 44555556788898886543220000000 000100111233455555543 3344
Q ss_pred EEecCCcEEEecCCCCCCCccCcccceEeeC-------CCCeeEEEECCc---eEEEEecCC---cEEEEecCCCCCCCC
Q 038610 148 VLTREGHVWTWGQPWPPGDIKQISVPVRVQG-------LEQVKLIAVGAF---HNLALQEDG---ALWAWGNNEYGQLGT 214 (374)
Q Consensus 148 ~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~-------~~~i~~i~~g~~---~~~~l~~~g---~v~~~G~n~~gqlG~ 214 (374)
.-..+|.|..|-.... .....+.. ...|..++...+ ..+.-..++ .|+.|-.....
T Consensus 183 ~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---- 251 (416)
T 2pm9_A 183 SAGSSNFASIWDLKAK-------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---- 251 (416)
T ss_dssp EESSSSCEEEEETTTT-------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----
T ss_pred EEcCCCCEEEEECCCC-------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----
Confidence 4467888999865410 01111111 244666665432 334444555 77777543211
Q ss_pred CCCCCCccceeecc-CCCCcEEEEEec---CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEE
Q 038610 215 GDTQPRSQPIPVQG-LSGLTLVDIAAG---GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQ 290 (374)
Q Consensus 215 ~~~~~~~~p~~~~~-~~~~~i~~i~~G---~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~ 290 (374)
.+..... .....|..++.. ....+.-..+|.|+.|-..... ....+... ...|..
T Consensus 252 -------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-------------~~~~~~~~-~~~v~~ 310 (416)
T 2pm9_A 252 -------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-------------QLSQFPAR-GNWCFK 310 (416)
T ss_dssp -------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC-------------EEEEEECS-SSCCCC
T ss_pred -------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc-------------cceeecCC-CCceEE
Confidence 1111111 112457777653 4455666778999999643211 01111111 133444
Q ss_pred EEccC---CeEEEEecCCCEEEEeCCCC
Q 038610 291 VSCGG---THSVALTRDGHIFSFGRGDH 315 (374)
Q Consensus 291 i~~G~---~~~~~lt~~g~vy~~G~n~~ 315 (374)
++... ...+.-..+|.|..|-....
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 44443 33344456888999986544
No 47
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=65.27 E-value=2.1 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=12.0
Q ss_pred CeEEEEecCCCEEEEeCC
Q 038610 296 THSVALTRDGHIFSFGRG 313 (374)
Q Consensus 296 ~~~~~lt~~g~vy~~G~n 313 (374)
.|+++.. +++||++|-.
T Consensus 244 ~~~~~~~-~~~i~v~GG~ 260 (302)
T 2xn4_A 244 NAGVCAV-NGLLYVVGGD 260 (302)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cCeEEEE-CCEEEEECCc
Confidence 5555554 7899999853
No 48
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=64.91 E-value=1.1e+02 Score=29.98 Aligned_cols=201 Identities=11% Similarity=0.010 Sum_probs=101.9
Q ss_pred CCeEEEecc----CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC----CCe
Q 038610 74 TKIVQAAIG----GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG----GTH 145 (374)
Q Consensus 74 ~~i~~i~~G----~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g----~~~ 145 (374)
..|..++.. ....+.-..||.|+.|-.... + .............|..++.. ...
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~-----------------~~~~~~~~~h~~~V~~v~~sp~~~~~~ 115 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R-----------------WSQIAVHAVHSASVNSVQWAPHEYGPL 115 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-E-----------------EEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-c-----------------ccccccccCCCCCeEEEEECCCCCCCE
Confidence 468888764 445666678999999964321 0 00011111124557777665 345
Q ss_pred EEEEecCCcEEEecCCCCCCCccCcccceEe-eCCCCeeEEEECC---------------ceEEEEecCCcEEEEecCCC
Q 038610 146 SVVLTREGHVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVGA---------------FHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 146 ~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g~---------------~~~~~l~~~g~v~~~G~n~~ 209 (374)
.+.-+.+|.|..|-...... ..+..+ .....|..++... ...+.-..+|.|+.|-....
T Consensus 116 l~sgs~dg~I~vwdl~~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 116 LLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp EEEEETTSEEEEEECCSSSC-----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred EEEEeCCCcEEEEEeecCCC-----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 66667889999997642110 111112 2225566666543 44555567888888854321
Q ss_pred CCCCCCCCCCCccceeeccCCCCcEEEEEecCC-----eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC
Q 038610 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW-----HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA 284 (374)
Q Consensus 210 gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~ 284 (374)
. ....+..........|..++...+ ..+.-..+|.|+.|-.......- . .........
T Consensus 191 ~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~------~---~~~~~~~~~ 253 (753)
T 3jro_A 191 A--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW------K---KTLLKEEKF 253 (753)
T ss_dssp T--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC------B---CCBSSSSCC
T ss_pred c--------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc------e---eEEeccCCC
Confidence 0 001111111112346777776644 44455678999999754321000 0 000000000
Q ss_pred CCcEEEEE--ccCCeEEEEecCCCEEEEeCCC
Q 038610 285 GEDIVQVS--CGGTHSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 285 ~~~i~~i~--~G~~~~~~lt~~g~vy~~G~n~ 314 (374)
...|..++ ......+.-..+|.|+.|-.+.
T Consensus 254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 12233333 3334455556789999997654
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=64.64 E-value=62 Score=27.11 Aligned_cols=258 Identities=10% Similarity=0.054 Sum_probs=123.4
Q ss_pred CCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcce-EEEecCCCeeeeec-------C-eeecc-c
Q 038610 2 ASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNS-LAICDDGKTKTENI-------P-SQVNA-L 71 (374)
Q Consensus 2 ~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~-~~l~~~g~~~~~~~-------p-~~~~~-~ 71 (374)
+.+|++++++......+........ .+..... -...|..++...+.. ++...+|....... + ..+.. .
T Consensus 18 s~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 95 (337)
T 1gxr_A 18 TADGQMQPVPFPPDALIGPGIPRHA-RQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLN 95 (337)
T ss_dssp CSSSCEEECCCCTTSSSSTTCCSEE-EEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSC
T ss_pred CCCCCEEEeecCCCcEeccccCCcc-ccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccC
Confidence 5789999888765544433332222 2222111 123455555443332 22222343111111 1 11110 1
Q ss_pred CCCCeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEE
Q 038610 72 SNTKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSV 147 (374)
Q Consensus 72 ~~~~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~ 147 (374)
....|..++... ...++...+|.|+.|-..... .............|..++.. ..+.+
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT------------------PRIKAELTSSAPACYALAISPDSKVCF 157 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------------EEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC------------------cceeeecccCCCceEEEEECCCCCEEE
Confidence 233566666543 345555678888888643210 00000111123445555543 34555
Q ss_pred EEecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccce
Q 038610 148 VLTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224 (374)
Q Consensus 148 ~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~ 224 (374)
.-..+|.|+.|-.... .....+. ....|..++.. ....+....+|.|+.|-.... ....
T Consensus 158 ~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~ 219 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-----------RQLQ 219 (337)
T ss_dssp EEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----------EEEE
T ss_pred EEeCCCcEEEEeCCCC-------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-----------ceEe
Confidence 6667899999865410 1111222 22567777664 335555567888998854321 0111
Q ss_pred eeccCCCCcEEEEEecC--CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEcc--CCeEEE
Q 038610 225 PVQGLSGLTLVDIAAGG--WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCG--GTHSVA 300 (374)
Q Consensus 225 ~~~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~ 300 (374)
.+. ....+..++... ...++-..+|.|+.|-..... ...+.. ....|..++.. ....+.
T Consensus 220 ~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 220 QHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--------------KYQLHL-HESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--------------EEEECC-CSSCEEEEEECTTSSEEEE
T ss_pred eec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--------------eEEEcC-CccceeEEEECCCCCEEEE
Confidence 111 113455555432 344555667888888643211 111111 12456666655 344555
Q ss_pred EecCCCEEEEeCCC
Q 038610 301 LTRDGHIFSFGRGD 314 (374)
Q Consensus 301 lt~~g~vy~~G~n~ 314 (374)
...+|.|+.|-...
T Consensus 283 ~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 283 TGKDNLLNAWRTPY 296 (337)
T ss_dssp EETTSEEEEEETTT
T ss_pred ecCCCcEEEEECCC
Confidence 56788999997643
No 50
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=60.63 E-value=1.2e+02 Score=29.08 Aligned_cols=73 Identities=26% Similarity=0.333 Sum_probs=37.3
Q ss_pred CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEE----ecCCeE-EEEecCCCEEEEeCCCCCC
Q 038610 189 AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIA----AGGWHS-TALTDDGEVYGWGRGEHGR 263 (374)
Q Consensus 189 ~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~----~G~~~~-~~lt~~g~vy~wG~n~~gq 263 (374)
..|++++..+|+||++|-...++- .........+.... +...+...+. .=..|+ +++..+|+||+.|.+..+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 357777777999999996443321 11111111111111 1112222221 113465 4556799999999876543
No 51
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=60.20 E-value=81 Score=26.94 Aligned_cols=199 Identities=10% Similarity=0.003 Sum_probs=102.7
Q ss_pred CCeEEEecc----CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC----Ce
Q 038610 74 TKIVQAAIG----GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG----TH 145 (374)
Q Consensus 74 ~~i~~i~~G----~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~----~~ 145 (374)
..|..++.. ....+....||.|..|-.... + .............|..++... ..
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 117 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R-----------------WSQIAVHAVHSASVNSVQWAPHEYGPL 117 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-E-----------------EEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-c-----------------eeEeeeecCCCcceEEEEeCCCCCCCE
Confidence 468788754 456666678899999964321 0 000111111244567766653 35
Q ss_pred EEEEecCCcEEEecCCCCCCCccCcccceEe-eCCCCeeEEEEC---------------CceEEEEecCCcEEEEecCCC
Q 038610 146 SVVLTREGHVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVG---------------AFHNLALQEDGALWAWGNNEY 209 (374)
Q Consensus 146 ~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g---------------~~~~~~l~~~g~v~~~G~n~~ 209 (374)
.+....+|.|..|-...... ..+..+ .....|..++.. ....++-..+|.|+.|-....
T Consensus 118 l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 118 LLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp EEEEETTSEEEEEECCTTSC-----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred EEEecCCCcEEEEecCCCCc-----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence 66667889999987652111 111112 222556666654 345556677889999854221
Q ss_pred CCCCCCCCCCCccceeeccCCCCcEEEEEecCC-----eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeec-C
Q 038610 210 GQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGW-----HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNL-L 283 (374)
Q Consensus 210 gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~-----~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~-~ 283 (374)
. ....+..........|..++...+ ..+....+|.|+.|-...... . .....+.. .
T Consensus 193 ~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~-~~~~~~~~~~ 254 (379)
T 3jrp_A 193 A--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------P-WKKTLLKEEK 254 (379)
T ss_dssp T--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------C-CEEEESSSSC
T ss_pred C--------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------c-ceeeeecccc
Confidence 0 001111111112246777776644 444556789999997432110 0 00011110 0
Q ss_pred CCCcEEEEEccC--CeEEEEecCCCEEEEeCC
Q 038610 284 AGEDIVQVSCGG--THSVALTRDGHIFSFGRG 313 (374)
Q Consensus 284 ~~~~i~~i~~G~--~~~~~lt~~g~vy~~G~n 313 (374)
....|..++... ...++-..+|.|+.|=.+
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 123466555543 344455678999999755
No 52
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=60.12 E-value=52 Score=24.72 Aligned_cols=109 Identities=9% Similarity=-0.091 Sum_probs=59.4
Q ss_pred CCCCeEEEeccC-ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC-CCeEEEE
Q 038610 72 SNTKIVQAAIGG-WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-GTHSVVL 149 (374)
Q Consensus 72 ~~~~i~~i~~G~-~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g-~~~~~~l 149 (374)
+..+..++.|-. .+.+-+..||.|-.-..... +..+-...+....++.|.|- ..+.+++
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~-------------------~~s~lei~sv~~G~V~L~g~~sg~yL~m 88 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD-------------------THIQFQISPEGNGEVLLKSTETGQYLRI 88 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTC-------------------GGGCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC-------------------CceEEEEEEccCCEEEEEEecCCEEEeE
Confidence 344678888865 56666778999976543211 11111111113347777765 5788889
Q ss_pred ecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEE-CCceEEEEecCCcEEEE
Q 038610 150 TREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV-GAFHNLALQEDGALWAW 204 (374)
Q Consensus 150 t~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~-g~~~~~~l~~~g~v~~~ 204 (374)
..+|+||.--.. .. ....-..+....-.+.+.. -....++++.+|++|+-
T Consensus 89 n~~G~l~Gs~~~--t~---ecsflEi~~en~y~v~i~g~~sg~YLamnk~Grlygs 139 (142)
T 3p6j_A 89 NPDGTVDGTRDR--SD---THIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGT 139 (142)
T ss_dssp CTTSBEEEECCT--TC---GGGCEEEEECSTTCEEEEETTTCCEEEECTTSBEEEE
T ss_pred CCCCCEeecccC--CC---CceEEEEEeecCcEEEEEEecCCEEEEECCCcCCccC
Confidence 999999975332 01 1111111111122233332 22347899999999963
No 53
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=59.37 E-value=82 Score=26.72 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=11.7
Q ss_pred CeEEEEecCCCEEEEeC
Q 038610 242 WHSTALTDDGEVYGWGR 258 (374)
Q Consensus 242 ~~~~~lt~~g~vy~wG~ 258 (374)
.|++++ -+++||++|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466555 5789999994
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=58.57 E-value=90 Score=26.97 Aligned_cols=194 Identities=7% Similarity=-0.040 Sum_probs=94.4
Q ss_pred eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCC---eEEEEecCCcEEEecCC
Q 038610 85 HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVLTREGHVWTWGQP 161 (374)
Q Consensus 85 ~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~---~~~~lt~~g~v~~~G~~ 161 (374)
..++-..+|.|+.|-......+ .........|..++.... ..+.-..+|.|+.|-..
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~~--------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSCS--------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCCC--------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCeEEEEeCCCccee--------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECC
Confidence 4566678899999965421110 000012345666665433 24456788999999764
Q ss_pred CCCCCccCc----------ccceEeeCCCCeeEEEECC--ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccC
Q 038610 162 WPPGDIKQI----------SVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229 (374)
Q Consensus 162 ~~~~~~~~~----------~~p~~i~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~ 229 (374)
......... ...........|..++... .+.+....+|.|+.|-.......-...... .....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~ 292 (408)
T 4a11_B 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV-----CNNSK 292 (408)
T ss_dssp CSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC-----CCCCS
T ss_pred CCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc-----ccccc
Confidence 221111000 0000011225577777643 355666788999999755422111100000 00001
Q ss_pred CCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccC--CeEEEEecCCCE
Q 038610 230 SGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--THSVALTRDGHI 307 (374)
Q Consensus 230 ~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~v 307 (374)
....+..........++...++.|+.|-..... ....+.. ....|..++... ...+.-..+|.|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-------------QITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCC-------------EEEEECC-CSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCc-------------ceeeecc-CCCeEEEEEEcCCCCEEEEECCCCeE
Confidence 111222222334555666778899999753211 1111111 124565555543 445555679999
Q ss_pred EEEeCCCCCc
Q 038610 308 FSFGRGDHGR 317 (374)
Q Consensus 308 y~~G~n~~gq 317 (374)
+.|-....-+
T Consensus 359 ~iw~~~~~~~ 368 (408)
T 4a11_B 359 LAWVPSLYEP 368 (408)
T ss_dssp EEEEECC---
T ss_pred EEEeCCCCCc
Confidence 9997765433
No 55
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=58.56 E-value=57 Score=27.70 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.0
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|+++.. +++||++|-
T Consensus 188 ~~~~~~~~-~~~iyv~GG 204 (315)
T 4asc_A 188 SLFGATVH-DGRIIVAAG 204 (315)
T ss_dssp BSCEEEEE-TTEEEEEEE
T ss_pred hceEEEEE-CCEEEEEec
Confidence 45666555 779999974
No 56
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=57.68 E-value=43 Score=28.16 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=12.1
Q ss_pred CceeEEEeCCCcEEEEeCC
Q 038610 83 GWHCLAVDDQGRAYAWGGN 101 (374)
Q Consensus 83 ~~~~~~lt~~g~v~~wG~n 101 (374)
..|+++.. +++||.+|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 34555554 7899999843
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=57.58 E-value=1e+02 Score=27.39 Aligned_cols=209 Identities=9% Similarity=0.024 Sum_probs=102.6
Q ss_pred CeEEEecc---CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CCeEEE
Q 038610 75 KIVQAAIG---GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHSVV 148 (374)
Q Consensus 75 ~i~~i~~G---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~~~ 148 (374)
.|..++.. ..+.+.-..+|.|..|-.+........ .............|..++.. ....+.
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 249 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-------------IDAKNIFTGHTAVVEDVAWHLLHESLFGS 249 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE-------------EECSEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce-------------eccceeecCCCCCEeeeEEeCCCCCEEEE
Confidence 34445432 225555667889999976542211000 00000111224457777763 344555
Q ss_pred EecCCcEEEecCCCCCCCccCcccceEe-eCCCCeeEEEECCc---eEEEEecCCcEEEEecCCCCCCCCCCCCCCccce
Q 038610 149 LTREGHVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVGAF---HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224 (374)
Q Consensus 149 lt~~g~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~ 224 (374)
...+|.|+.|-...... ......+ .....|..|+...+ ..+.-..+|.|..|-....++ +.
T Consensus 250 ~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~ 314 (430)
T 2xyi_A 250 VADDQKLMIWDTRNNNT----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KL 314 (430)
T ss_dssp EETTSEEEEEETTCSCS----SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CS
T ss_pred EeCCCeEEEEECCCCCC----CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------Ce
Confidence 66899999997652110 0111112 22356777776432 234446778888886543211 11
Q ss_pred eeccCCCCcEEEEEecCC---eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC--CCcEEEEEccCC---
Q 038610 225 PVQGLSGLTLVDIAAGGW---HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA--GEDIVQVSCGGT--- 296 (374)
Q Consensus 225 ~~~~~~~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~--- 296 (374)
.........|..|+.... ..+.-..+|.|.+|--...+..-... ......|..+.... ...|..++....
T Consensus 315 ~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 392 (430)
T 2xyi_A 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH--HHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred EEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc--ccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence 111112246777776543 34445678889999754432210000 00001122332221 234666665543
Q ss_pred eEEEEecCCCEEEEeCC
Q 038610 297 HSVALTRDGHIFSFGRG 313 (374)
Q Consensus 297 ~~~~lt~~g~vy~~G~n 313 (374)
..+....+|.|..|-.+
T Consensus 393 ~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 393 IICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEEEETTSEEEEEEEC
T ss_pred EEEEEECCCCEEEeEcc
Confidence 34445678888888764
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=57.30 E-value=88 Score=26.44 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=98.4
Q ss_pred CCCeEEEeccC-----ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEE-------
Q 038610 73 NTKIVQAAIGG-----WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVA------- 140 (374)
Q Consensus 73 ~~~i~~i~~G~-----~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~------- 140 (374)
...|..++... ...+.-..+|.|..|-.....+. ..........|..+.
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------~~~~~~~~~~v~~~~~~~~~~~ 125 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP-------------------VYSVKGHKEIINAIDGIGGLGI 125 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC-------------------SEEECCCSSCEEEEEEESGGGC
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc-------------------EEEEEecccceEEEeecccccc
Confidence 34677777654 34555567899999965432100 000001134455552
Q ss_pred -eCCCeEEEEecCCcEEEecCCCCCCCccCcccceEeeC-----CCCeeEEE------ECCceEEEEecCCcEEEEecCC
Q 038610 141 -AGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQG-----LEQVKLIA------VGAFHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 141 -~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~-----~~~i~~i~------~g~~~~~~l~~~g~v~~~G~n~ 208 (374)
....+.+.-..+|.|..|-....... ...+.. ...+..++ ......++-..+|.|+.|-...
T Consensus 126 s~~~~~l~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 126 GEGAPEIVTGSRDGTVKVWDPRQKDDP------VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp C-CCCEEEEEETTSCEEEECTTSCSSC------SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred CCCccEEEEEeCCCeEEEEeCCCCCCc------ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 22335555677899999976521111 111111 12566665 3344555556778899885432
Q ss_pred CCCCCCCCCCCCccceeeccCCCCcEEEEEecC-----CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecC
Q 038610 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG-----WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283 (374)
Q Consensus 209 ~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~-----~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~ 283 (374)
. + +..... ....|..++... ...++-..+|.|+.|-......+ ......... .
T Consensus 200 ~-~-----------~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~-~ 257 (357)
T 3i2n_A 200 M-A-----------LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT--------KGFASVSEK-A 257 (357)
T ss_dssp T-E-----------EEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT--------TEEEEEEEE-C
T ss_pred C-c-----------eeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc--------cceeeeccC-C
Confidence 1 1 111111 124577776653 45555677889999874321100 000000111 1
Q ss_pred CCCcEEEEEccCCe---EEEEecCCCEEEEeCC
Q 038610 284 AGEDIVQVSCGGTH---SVALTRDGHIFSFGRG 313 (374)
Q Consensus 284 ~~~~i~~i~~G~~~---~~~lt~~g~vy~~G~n 313 (374)
....|..++...+. .+.-..+|.|+.|-..
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 23567777665543 3444578999999754
No 59
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=56.68 E-value=1.1e+02 Score=27.36 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=57.5
Q ss_pred EEEEEeCCCeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCC
Q 038610 136 VRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTG 215 (374)
Q Consensus 136 i~~i~~g~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~ 215 (374)
|.++++ ....+++..++.|..|--..-. ... ..-.....+.++.+-....++++.+|.|+.|--.. +++
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~-~~~-----~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~-~~~--- 158 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELS-EFR-----TVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRT-KST--- 158 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTT-CEE-----EEEECSSCEEEEEECSSEEEEEETTSEEEEEETTT-CCE---
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhh-ccC-----ccceeecceeeEEecCCCEEEEECCCCEEEEEccC-Ccc---
Confidence 889999 7677777788999998654111 000 01111134666666666688889999999994432 111
Q ss_pred CCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEE
Q 038610 216 DTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGW 256 (374)
Q Consensus 216 ~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~w 256 (374)
..+. ..|..|+-...-.++...+|++..|
T Consensus 159 --------~~~~----~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 159 --------KQLA----QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp --------EEEE----ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred --------cccc----CCceEEEEcCCceEEEEcCCcEEEE
Confidence 1111 3566666555555555556665555
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=56.66 E-value=1e+02 Score=26.89 Aligned_cols=201 Identities=11% Similarity=0.052 Sum_probs=96.1
Q ss_pred CCeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CCeEEE
Q 038610 74 TKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHSVV 148 (374)
Q Consensus 74 ~~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~~~ 148 (374)
..|..++... ...+.-..+|.|..|-...... +. ............|..++.. ....+.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-~~---------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-AI---------------NSMARFSNHSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-CC---------------CEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc-cc---------------cchhhccCCccceEEEEEcCCCCCEEEE
Confidence 4577776543 3344455789999996443100 00 0000001113345555543 445555
Q ss_pred EecCCcEEEecCCCCCCCc---cCcccceEeeCCCCeeEEEECCc---eEEEEecCCcEEEEecCCCCCCCCCCCCCCcc
Q 038610 149 LTREGHVWTWGQPWPPGDI---KQISVPVRVQGLEQVKLIAVGAF---HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQ 222 (374)
Q Consensus 149 lt~~g~v~~~G~~~~~~~~---~~~~~p~~i~~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~ 222 (374)
-..+|.|+.|-........ ..............|..++...+ ..+.-..+|.|..|-.... ..
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------~~ 200 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----------KE 200 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----------EE
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----------Cc
Confidence 6678999999765222100 00000001112256777776543 3444467888999854321 01
Q ss_pred ceeeccCC-----CCcEEEEEecCC---eEEEEecCC---CEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEE
Q 038610 223 PIPVQGLS-----GLTLVDIAAGGW---HSTALTDDG---EVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQV 291 (374)
Q Consensus 223 p~~~~~~~-----~~~i~~i~~G~~---~~~~lt~~g---~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i 291 (374)
...+.... ...|..++...+ ..+.-..+| .|+.|-.....+.- ..+.......|..+
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~------------~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL------------QTLNQGHQKGILSL 268 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS------------BCCCSCCSSCEEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc------------EEeecCccCceeEE
Confidence 11111110 345777766543 344445566 78888754321110 00000112345565
Q ss_pred Ec---cCCeEEEEecCCCEEEEeCC
Q 038610 292 SC---GGTHSVALTRDGHIFSFGRG 313 (374)
Q Consensus 292 ~~---G~~~~~~lt~~g~vy~~G~n 313 (374)
+. .....+.-..+|.|+.|-..
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~ 293 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPE 293 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSS
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCC
Confidence 54 34455555678888888654
No 61
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=56.59 E-value=86 Score=26.12 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=70.8
Q ss_pred cCCCCeEEEe--ccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeE
Q 038610 71 LSNTKIVQAA--IGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHS 146 (374)
Q Consensus 71 ~~~~~i~~i~--~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~ 146 (374)
..+..++.+. ....+.+++|+.|++|.+-.... -... .. . .++..-..+...+.|+.+... ..+.
T Consensus 30 ke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r---~~-G----~~i~~~i~L~~~e~Iv~~~~~~~~~~l 98 (256)
T 1zvt_A 30 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSAR---GQ-G----EPLTGKLTLPPGATVDHMLMESDDQKL 98 (256)
T ss_dssp CTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCSS---SC-C----EEGGGTCCCCTTCCEEEEECCCTTCEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCcC---CC-C----eEeeeeecCCCCCEEEEEEEeCCCCEE
Confidence 3445565554 45667899999999999975542 0000 00 0 011111123346778877663 4457
Q ss_pred EEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEE---ECCceEEEEecCCcEEEEecCCCCCCCC
Q 038610 147 VVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIA---VGAFHNLALQEDGALWAWGNNEYGQLGT 214 (374)
Q Consensus 147 ~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~---~g~~~~~~l~~~g~v~~~G~n~~gqlG~ 214 (374)
+++|++|.+.-.-..........-..-..+.....+..+. .+..+.++++++|++.-+-.++.-.+|.
T Consensus 99 ll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 99 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp EEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred EEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 7889999877654320000000000000111112333322 2567899999999999887766544444
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=56.56 E-value=1.9e+02 Score=30.03 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=67.5
Q ss_pred eEEEEecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECCc--eEEEEecCCcEEEEecCCCCCCCCCCCCCCc
Q 038610 145 HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGAF--HNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~ 221 (374)
+.+.-..+|.|+.|-..... .. ..+. ....|..++...+ ..+.-..+|.|+.|-......+. ..
T Consensus 1099 ~l~s~s~d~~v~iwd~~~~~----~~---~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~ 1165 (1249)
T 3sfz_A 1099 KFSSTSADKTAKIWSFDLLS----PL---HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SC 1165 (1249)
T ss_dssp SCEEECCSSCCCEECSSSSS----CS---BCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CC
T ss_pred EEEEEcCCCcEEEEECCCcc----ee---eeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------Ee
Confidence 44455667778777543111 00 0111 1245666665433 34444567888888644321111 11
Q ss_pred cceeec---cCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEE--EEEccCC
Q 038610 222 QPIPVQ---GLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIV--QVSCGGT 296 (374)
Q Consensus 222 ~p~~~~---~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~--~i~~G~~ 296 (374)
.|.... ......|..++...+..++++.+|.|..|--.....+..-. . ....|. .++....
T Consensus 1166 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~~~-------------~-~~~~i~~~~~s~dg~ 1231 (1249)
T 3sfz_A 1166 APISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFY-------------T-NGTNLKKIHVSPDFR 1231 (1249)
T ss_dssp CCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCCCC-------------C-SSCCCCCCEECSSSC
T ss_pred ccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeeeee-------------c-cCCcccEEEECCCCC
Confidence 111110 11123566666665555555556888888744322211100 0 011222 3344445
Q ss_pred eEEEEecCCCEEEEeC
Q 038610 297 HSVALTRDGHIFSFGR 312 (374)
Q Consensus 297 ~~~~lt~~g~vy~~G~ 312 (374)
..++...+|.|+.|--
T Consensus 1232 ~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1232 TYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CEEEECTTCCEEEECC
T ss_pred EEEEecCCcEEEEEee
Confidence 6666778899999853
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=56.13 E-value=85 Score=25.90 Aligned_cols=187 Identities=10% Similarity=-0.063 Sum_probs=100.2
Q ss_pred CeEEEec--cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCCeEEEEecC
Q 038610 75 KIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTRE 152 (374)
Q Consensus 75 ~i~~i~~--G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~~~~~lt~~ 152 (374)
.|..++. .....+.-..+|.+..|-...... .............|..++......+.-..+
T Consensus 61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d 123 (313)
T 3odt_A 61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-----------------EDPLYTLIGHQGNVCSLSFQDGVVISGSWD 123 (313)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-----------------SCC-CEECCCSSCEEEEEEETTEEEEEETT
T ss_pred cEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-----------------CCcccchhhcccCEEEEEecCCEEEEEeCC
Confidence 4555543 344555566778887775433110 000111112245677777777777778889
Q ss_pred CcEEEecCCCCCCCccCcccceEeeCCCCeeEEEE---CCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccC
Q 038610 153 GHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV---GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGL 229 (374)
Q Consensus 153 g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~---g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~ 229 (374)
|.|+.|-.. ............|..+.. .....+....+|.|+.|-.. .....+...
T Consensus 124 ~~i~~~d~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~ 182 (313)
T 3odt_A 124 KTAKVWKEG--------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSGI 182 (313)
T ss_dssp SEEEEEETT--------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECSS
T ss_pred CCEEEEcCC--------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEecc
Confidence 999999621 111111112245655554 45666777788999998411 111111111
Q ss_pred CCCcEEEEEecCC-eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCC-eEEEEecCCCE
Q 038610 230 SGLTLVDIAAGGW-HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT-HSVALTRDGHI 307 (374)
Q Consensus 230 ~~~~i~~i~~G~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~~g~v 307 (374)
....|..++.... ..++-..+|.|+.|-..... ....+.. ....|..++...+ ..++-..+|.|
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-------------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 183 HNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-------------VLRTYEG-HESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC-------------EEEEEEC-CSSCEEEEEECTTSCEEEEETTSEE
T ss_pred CcccEEEEEEcCCCeEEEccCCCeEEEEECCchh-------------hhhhhhc-CCceEEEEEEecCCCEEEEecCCEE
Confidence 2345666655332 35556778899999753211 1111221 2245666665543 45556688999
Q ss_pred EEEeCC
Q 038610 308 FSFGRG 313 (374)
Q Consensus 308 y~~G~n 313 (374)
+.|-..
T Consensus 249 ~iwd~~ 254 (313)
T 3odt_A 249 RIWSKE 254 (313)
T ss_dssp EEECTT
T ss_pred EEEECC
Confidence 999654
No 64
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=55.88 E-value=14 Score=31.61 Aligned_cols=17 Identities=35% Similarity=0.484 Sum_probs=11.8
Q ss_pred CceeEEEeCCCcEEEEeC
Q 038610 83 GWHCLAVDDQGRAYAWGG 100 (374)
Q Consensus 83 ~~~~~~lt~~g~v~~wG~ 100 (374)
..|++++. +++||.+|-
T Consensus 113 ~~~~~~~~-~~~iyv~GG 129 (308)
T 1zgk_A 113 NRIGVGVI-DGHIYAVGG 129 (308)
T ss_dssp BTCEEEEE-TTEEEEECC
T ss_pred cccEEEEE-CCEEEEEcC
Confidence 34555554 789999984
No 65
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=55.80 E-value=1.1e+02 Score=26.87 Aligned_cols=98 Identities=9% Similarity=-0.135 Sum_probs=53.3
Q ss_pred eEEEEecCCcEEEecCCCCCCCccCcccceEee--CCCCeeEEEECCc---eEEEEecCCcEEEEecCCCCCCCCCCCCC
Q 038610 145 HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ--GLEQVKLIAVGAF---HNLALQEDGALWAWGNNEYGQLGTGDTQP 219 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~--~~~~i~~i~~g~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~ 219 (374)
+.++-+.+|.|..|-.... ..+..+. ....|..++...+ ..+.-..+|.|+.|-.....+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-------- 325 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSK-------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-------- 325 (420)
T ss_dssp EEEEEETTSCEEEEETTTC-------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------
T ss_pred EEEEEcCCCeEEEEECCCC-------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------
Confidence 4445567888888865311 1122222 1256777776544 556667889999995432111
Q ss_pred CccceeeccCCCCcEEEEEecCCeEEE-EecCCCEEEEeCC
Q 038610 220 RSQPIPVQGLSGLTLVDIAAGGWHSTA-LTDDGEVYGWGRG 259 (374)
Q Consensus 220 ~~~p~~~~~~~~~~i~~i~~G~~~~~~-lt~~g~vy~wG~n 259 (374)
....+.......|..+.......++ -..+|.|..|--.
T Consensus 326 --~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 326 --PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp --CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred --chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence 0112222123456666665554443 3457889999754
No 66
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=54.15 E-value=97 Score=25.98 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=12.4
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|++++. +++||++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 45666665 778999984
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=53.64 E-value=1.1e+02 Score=26.51 Aligned_cols=137 Identities=8% Similarity=0.048 Sum_probs=72.5
Q ss_pred ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEEEEecCCcEEEecCC
Q 038610 84 WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSVVLTREGHVWTWGQP 161 (374)
Q Consensus 84 ~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~~lt~~g~v~~~G~~ 161 (374)
...++...+|.|+.|-....-.+ .........|..++.. ..+.+.-..+|.|+.|-..
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~~~~--------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEKTPT--------------------GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp TEEEEECGGGCEEEEETTCSSCS--------------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred CEEEEEcCCCeEEEEEcCCCcee--------------------eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 34566667888888865431100 0000113345555443 3455556678999998654
Q ss_pred CCCCCccCcccceEee-CCCCeeEEEECCc-eEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEe
Q 038610 162 WPPGDIKQISVPVRVQ-GLEQVKLIAVGAF-HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAA 239 (374)
Q Consensus 162 ~~~~~~~~~~~p~~i~-~~~~i~~i~~g~~-~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~ 239 (374)
.. .....+. ....|..++...+ ..++...+|.|+.|-.... .+..........|..++.
T Consensus 278 ~~-------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 278 NG-------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIFAGRI 338 (425)
T ss_dssp SB-------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT------------EEEEEEECTTCCEEEEEE
T ss_pred CC-------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC------------cEeEecccCCccEEEEEE
Confidence 11 1111221 2255666665433 5566677888999854321 111111112245666665
Q ss_pred cC--CeEEEEecCCCEEEEeCC
Q 038610 240 GG--WHSTALTDDGEVYGWGRG 259 (374)
Q Consensus 240 G~--~~~~~lt~~g~vy~wG~n 259 (374)
.. ...++-..+|.|+.|-..
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECH
T ss_pred cCCCCEEEEEECCCeEEEEECC
Confidence 53 345556678899999753
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=53.30 E-value=1.1e+02 Score=26.16 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=101.1
Q ss_pred CeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC----CCeEEE
Q 038610 75 KIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG----GTHSVV 148 (374)
Q Consensus 75 ~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g----~~~~~~ 148 (374)
.|..++... ...+.-..||.|+.|-..... .............|..++.. ..+.+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------------------ceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence 566666543 334444578888888543100 00000111124567777764 456666
Q ss_pred EecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECC----ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccc
Q 038610 149 LTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 149 lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~----~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
-..+|.|..|-.... . ......+. ....|..++... ...+....+|.|..|-...... ..+
T Consensus 75 ~~~dg~v~iwd~~~~----~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 75 CSYDGKVLIWKEENG----R-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp EETTSCEEEEEEETT----E-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred eccCCEEEEEEcCCC----c-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 678899999965310 0 00111111 225677777653 3566667888999886543211 111
Q ss_pred eeeccCCCCcEEEEEecC---------------CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcE
Q 038610 224 IPVQGLSGLTLVDIAAGG---------------WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288 (374)
Q Consensus 224 ~~~~~~~~~~i~~i~~G~---------------~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i 288 (374)
..+. .....|..++... ...++-..+|.|+.|-.... .........+.. ....|
T Consensus 141 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~-h~~~v 209 (379)
T 3jrp_A 141 IIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD---------AQTYVLESTLEG-HSDWV 209 (379)
T ss_dssp EEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT---------TTEEEEEEEECC-CSSCE
T ss_pred EEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC---------CcceeeEEEEec-ccCcE
Confidence 1111 1224566665543 45556677899999963211 000011111111 12457
Q ss_pred EEEEccCC-----eEEEEecCCCEEEEeCCC
Q 038610 289 VQVSCGGT-----HSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 289 ~~i~~G~~-----~~~~lt~~g~vy~~G~n~ 314 (374)
..++.... ..+....+|.|..|-...
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 77766543 444456789999997543
No 69
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=52.67 E-value=1e+02 Score=25.73 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=42.0
Q ss_pred CcEEEEEecCCeEEEEecC-CC-EEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEc--c---------CCeE
Q 038610 232 LTLVDIAAGGWHSTALTDD-GE-VYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC--G---------GTHS 298 (374)
Q Consensus 232 ~~i~~i~~G~~~~~~lt~~-g~-vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~--G---------~~~~ 298 (374)
..+.=........++++.+ |+ +|.++.+... ......|.-+....+..+. |.. | ..+.
T Consensus 176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--------~~~l~~~~~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~ 246 (276)
T 3no2_A 176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIE--------GVQLFFVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQL 246 (276)
T ss_dssp SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB--------SCCCSEEEEEEECTTSCEE-EEEECTTCTTGGGSCCCSE
T ss_pred CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--------CccccccccceEcCCCCEE-EEeccCccccccccCCceE
Confidence 3444333333456677766 76 5666633210 0112345555555445544 333 2 3357
Q ss_pred EEEecCCCEEEEeCCCCCccCC
Q 038610 299 VALTRDGHIFSFGRGDHGRLGY 320 (374)
Q Consensus 299 ~~lt~~g~vy~~G~n~~gqLG~ 320 (374)
+.++.+|++ .|=.+.....|.
T Consensus 247 ~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 247 VEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EEECTTSBE-EEEECCTTTSCC
T ss_pred EEECCCCCE-EEEecCcccccc
Confidence 888888887 676666666654
No 70
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=48.10 E-value=85 Score=23.54 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=61.7
Q ss_pred CCcEEEEEeCC-CeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEEC-CceEEEEecCCcEEEEecCCCC
Q 038610 133 KLIVRQVAAGG-THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVG-AFHNLALQEDGALWAWGNNEYG 210 (374)
Q Consensus 133 ~~~i~~i~~g~-~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g-~~~~~~l~~~g~v~~~G~n~~g 210 (374)
.....++.|-. .+.+-+..||+|-.-... ...........+ ...++.|.|- ....+++..+|+||+.-.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~---~~~~s~lei~sv--~~G~V~L~g~~sg~yL~mn~~G~l~Gs~~~--- 100 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDR---SDTHIQFQISPE--GNGEVLLKSTETGQYLRINPDGTVDGTRDR--- 100 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCT---TCGGGCEEEEEE--ETTEEEEEETTTTEEEEECTTSBEEEECCT---
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCC---CCCceEEEEEEc--cCCEEEEEEecCCEEEeECCCCCEeecccC---
Confidence 56778888876 677778889999865432 111111111111 1357788775 5778889999999985221
Q ss_pred CCCCCCCCCCccceeeccCC--CCcEEEEEecCCeEEEEecCCCEEE
Q 038610 211 QLGTGDTQPRSQPIPVQGLS--GLTLVDIAAGGWHSTALTDDGEVYG 255 (374)
Q Consensus 211 qlG~~~~~~~~~p~~~~~~~--~~~i~~i~~G~~~~~~lt~~g~vy~ 255 (374)
.......++.... ...|..+.. ...++++.+|++|+
T Consensus 101 -------t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 101 -------SDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp -------TCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred -------CCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 1112222322221 122333333 35889999999986
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=46.87 E-value=2.1e+02 Score=27.75 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=93.1
Q ss_pred CeEEEec--cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCC--eEEEEe
Q 038610 75 KIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT--HSVVLT 150 (374)
Q Consensus 75 ~i~~i~~--G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~--~~~~lt 150 (374)
.|..++. .....+....+|.|+.|-......+ .........|..++...+ +.+.-.
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--------------------~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--------------------VDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--------------------EEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--------------------EEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 4555553 3445666678899999965432110 000011344666555433 445556
Q ss_pred cCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECC---ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceee
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGA---FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~---~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~ 226 (374)
.+|.|..|-.... ......+. ....|..++... ...+....+|.|+.|-.... .....+
T Consensus 117 ~dg~i~vw~~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~ 179 (814)
T 3mkq_A 117 DDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTL 179 (814)
T ss_dssp TTSEEEEEEGGGT------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEE
T ss_pred CCCEEEEEECCCC------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEE
Confidence 7888888864310 01111122 225577777643 34455567899999964321 011111
Q ss_pred ccCCCCcEEEEEe----cCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCC--eEEE
Q 038610 227 QGLSGLTLVDIAA----GGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGT--HSVA 300 (374)
Q Consensus 227 ~~~~~~~i~~i~~----G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~ 300 (374)
.......+..++. .....++-..+|.|+.|-.... .....+... ...|..++...+ ..+.
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-------------SCVATLEGH-MSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-------------EEEEEEECC-SSCEEEEEECSSSSEEEE
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-------------cEEEEEcCC-CCCEEEEEEcCCCCEEEE
Confidence 1111123333333 3344555567888999964211 111222211 234555554433 3444
Q ss_pred EecCCCEEEEeCCC
Q 038610 301 LTRDGHIFSFGRGD 314 (374)
Q Consensus 301 lt~~g~vy~~G~n~ 314 (374)
-..+|.|+.|-...
T Consensus 246 ~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 246 GSEDGTLKIWNSST 259 (814)
T ss_dssp EETTSCEEEEETTT
T ss_pred EeCCCeEEEEECCC
Confidence 45678888886543
No 72
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=44.99 E-value=1.6e+02 Score=25.90 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=85.1
Q ss_pred CCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEe--CCCeEEEEec
Q 038610 74 TKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA--GGTHSVVLTR 151 (374)
Q Consensus 74 ~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~--g~~~~~~lt~ 151 (374)
..+..++......+.-..++.++.|-....... .. ........+..+.. ...+.+....
T Consensus 190 ~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~-----------------~~--~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 190 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH-----------------VA--TLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTSSSCE-----------------EE--EEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEeeCCCEEEEEeCCCceeEeeeccccee-----------------eE--EecccccceeeeeecCCCCeeeeeec
Confidence 356666665555555566777777743221110 00 00001222333332 3345556677
Q ss_pred CCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECC--ceEEEE---ecCCcEEEEecCCCCCCCCCCCCCCccceee
Q 038610 152 EGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA--FHNLAL---QEDGALWAWGNNEYGQLGTGDTQPRSQPIPV 226 (374)
Q Consensus 152 ~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~--~~~~~l---~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~ 226 (374)
+|.+..|-........ ............|..++... ...+++ +.|+.|..|-.... + ....+
T Consensus 251 D~~v~i~~~~~~~~~~--~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~----------~~~~~ 317 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGW--VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-A----------CLSAV 317 (420)
T ss_dssp TSCEEEEESSCCSSCS--CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-E----------EEEEE
T ss_pred cccceEEeeccccccc--eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-c----------cceee
Confidence 8888888654221111 11111112224566665432 122222 25677888843221 0 01111
Q ss_pred ccCCCCcEEEEEecC-CeEEEE-e--cCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCeEEE--
Q 038610 227 QGLSGLTLVDIAAGG-WHSTAL-T--DDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVA-- 300 (374)
Q Consensus 227 ~~~~~~~i~~i~~G~-~~~~~l-t--~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~-- 300 (374)
.. ...+..+.... ...++. . .+|.|++|-....- .-..+..- ...|..|+...+...+
T Consensus 318 ~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~-------------~v~~l~gH-~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 318 DA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-------------KVAELKGH-TSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp EC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-------------EEEEECCC-SSCEEEEEECTTSSCEEE
T ss_pred cc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-------------EEEEEcCC-CCCEEEEEEcCCCCEEEE
Confidence 11 12344443322 222222 2 57889998642211 01111111 2467777765443333
Q ss_pred EecCCCEEEEeC
Q 038610 301 LTRDGHIFSFGR 312 (374)
Q Consensus 301 lt~~g~vy~~G~ 312 (374)
-..||.|..|=-
T Consensus 382 ~s~D~tvriWdv 393 (420)
T 4gga_A 382 AAADETLRLWRC 393 (420)
T ss_dssp EETTTEEEEECC
T ss_pred EecCCeEEEEEC
Confidence 346888988843
No 73
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=44.95 E-value=1.5e+02 Score=25.41 Aligned_cols=160 Identities=14% Similarity=0.216 Sum_probs=86.4
Q ss_pred EEeCCCeEEEEecCCcEEEecCC-CCCCCccCcccc----eEeeCCCCeeEEEE-----CCceEEEEecCCcEEEEecCC
Q 038610 139 VAAGGTHSVVLTREGHVWTWGQP-WPPGDIKQISVP----VRVQGLEQVKLIAV-----GAFHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 139 i~~g~~~~~~lt~~g~v~~~G~~-~~~~~~~~~~~p----~~i~~~~~i~~i~~-----g~~~~~~l~~~g~v~~~G~n~ 208 (374)
++.+.++.+++|+.|++|.+-.. .........-.| ..+...+.|..+.. .....+++|++|.+--.-..+
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e 128 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 128 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHH
Confidence 45567788999999999997654 111111111111 12333466777654 233577789999887765443
Q ss_pred CCCCCCCCCCCCccceeeccCCCCcEEEEE--ecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCC
Q 038610 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDIA--AGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGE 286 (374)
Q Consensus 209 ~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~--~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~ 286 (374)
+-... ...-..+....+..++.+. .+....+++|++|+++-+-..+.-..|.... . ...+.+..+.
T Consensus 129 ~~~~~------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~--G----v~~i~L~~~d 196 (307)
T 1zi0_A 129 FNRLR------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT--G----VRGIRLGEGD 196 (307)
T ss_dssp GTTCC------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC--C----EECCCCCTTC
T ss_pred hhccc------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC--C----eEeEEeCCCC
Confidence 32111 0000111111234555443 3567888999999999887655444443221 0 1223333456
Q ss_pred cEEEEEcc--CCeEEEEecCCCEEEE
Q 038610 287 DIVQVSCG--GTHSVALTRDGHIFSF 310 (374)
Q Consensus 287 ~i~~i~~G--~~~~~~lt~~g~vy~~ 310 (374)
.|+.+..- ....+++|++|.+--.
T Consensus 197 ~Vv~~~~~~~~~~ll~~T~~G~~Kr~ 222 (307)
T 1zi0_A 197 KVVSLIVPRGDGAILTATQNGYGKRT 222 (307)
T ss_dssp CEEEEECCCSSCEEEEEETTSEEEEE
T ss_pred EEEEEEEecCCCEEEEEEcCCceEEE
Confidence 77776543 2346777777754444
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=43.82 E-value=2.3e+02 Score=27.41 Aligned_cols=188 Identities=12% Similarity=-0.006 Sum_probs=93.4
Q ss_pred CeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEe--CCCeEEEEe
Q 038610 75 KIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAA--GGTHSVVLT 150 (374)
Q Consensus 75 ~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~--g~~~~~~lt 150 (374)
.|..|+... ...++-..+|.|..|-... |++ .. ........|..++. .....++-.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~-----------------~~--~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYET-QVE-----------------VR--SIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-TEE-----------------EE--EEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCC-Cce-----------------EE--EEecCCCcEEEEEEeCCCCEEEEEe
Confidence 456655443 3444455788888886432 110 00 00011233444443 344556667
Q ss_pred cCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECCc--eEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeec
Q 038610 151 REGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGAF--HNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227 (374)
Q Consensus 151 ~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~ 227 (374)
.+|.|+.|-...+ .....+. ....|..++...+ ..+.-..+|.|..|-.... .......
T Consensus 75 ~dg~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----------~~~~~~~ 136 (814)
T 3mkq_A 75 DDFRIRVFNYNTG-------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-----------WALEQTF 136 (814)
T ss_dssp TTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-----------SEEEEEE
T ss_pred CCCeEEEEECCCC-------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-----------ceEEEEE
Confidence 7899999965411 1111222 2255777766533 3445567788888854221 0111111
Q ss_pred cCCCCcEEEEEecC---CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEc----cCCeEEE
Q 038610 228 GLSGLTLVDIAAGG---WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSC----GGTHSVA 300 (374)
Q Consensus 228 ~~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~~~~~ 300 (374)
......|..++... ...+.-..+|.|+.|-..... ....+.......+..++. .....++
T Consensus 137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-------------PNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-------------CSEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------ceeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence 11224577776644 344455678999999743211 111111111123333333 3345555
Q ss_pred EecCCCEEEEeCC
Q 038610 301 LTRDGHIFSFGRG 313 (374)
Q Consensus 301 lt~~g~vy~~G~n 313 (374)
-..+|.|+.|-..
T Consensus 204 ~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 204 ASDDLTIKIWDYQ 216 (814)
T ss_dssp ECTTSEEEEEETT
T ss_pred EeCCCEEEEEECC
Confidence 5678889999653
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=43.21 E-value=1.6e+02 Score=25.33 Aligned_cols=108 Identities=7% Similarity=-0.016 Sum_probs=55.9
Q ss_pred CcEEEEEeCCC-eEEEEecCCcEEEecCCCCCCCccCcccceEeeC-------CCCeeEEEEC--CceEEEEecC---Cc
Q 038610 134 LIVRQVAAGGT-HSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQG-------LEQVKLIAVG--AFHNLALQED---GA 200 (374)
Q Consensus 134 ~~i~~i~~g~~-~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~-------~~~i~~i~~g--~~~~~~l~~~---g~ 200 (374)
..|..++...+ ..++-..+|.|+.|-... ......+.. ...|..++.. ....++-..+ |.
T Consensus 187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~ 259 (397)
T 1sq9_A 187 QFATSVDISERGLIATGFNNGTVQISELST-------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259 (397)
T ss_dssp CCCCEEEECTTSEEEEECTTSEEEEEETTT-------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred CCceEEEECCCceEEEEeCCCcEEEEECCC-------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce
Confidence 34455544433 444445678898886541 111122222 4557776653 3344444566 78
Q ss_pred EEEEecCCCCCCCCCCCCCCccceeeccC------------CCCcEEEEEec--CCeEEEEecCCCEEEEeCC
Q 038610 201 LWAWGNNEYGQLGTGDTQPRSQPIPVQGL------------SGLTLVDIAAG--GWHSTALTDDGEVYGWGRG 259 (374)
Q Consensus 201 v~~~G~n~~gqlG~~~~~~~~~p~~~~~~------------~~~~i~~i~~G--~~~~~~lt~~g~vy~wG~n 259 (374)
|+.|-...... ...+... ....|..++.. ....+.-..+|.|+.|-..
T Consensus 260 i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 260 ITLYETEFGER-----------IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp EEEEETTTCCE-----------EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEEECCCCcc-----------cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 88886432111 1111110 22457777665 3345555678889999753
No 76
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=43.16 E-value=1.8e+02 Score=25.81 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=76.4
Q ss_pred eEEEEecCCcEEEecCCCCCCCccCcccceEe-eCCCCeeEEEEC---CceEEEEecCCcEEEEecCCCCCCCCCCCCCC
Q 038610 145 HSVVLTREGHVWTWGQPWPPGDIKQISVPVRV-QGLEQVKLIAVG---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220 (374)
Q Consensus 145 ~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i-~~~~~i~~i~~g---~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~ 220 (374)
+.+.-..+|.|..|-................. .....|..|+.. ....+....+|.|+.|-......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------
Confidence 45555678999998765211111111111112 222567777763 34455566889999996543210
Q ss_pred ccceeeccCCCCcEEEEEecCC---eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCe
Q 038610 221 SQPIPVQGLSGLTLVDIAAGGW---HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH 297 (374)
Q Consensus 221 ~~p~~~~~~~~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~ 297 (374)
..+..........|..|+.... ..+.-..+|.|..|-....++. ...+.. ....|..|......
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~------------~~~~~~-h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------------LHSFES-HKDEIFQVQWSPHN 333 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC------------SEEEEC-CSSCEEEEEECSSC
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC------------eEEeec-CCCCEEEEEECCCC
Confidence 1111111122245777766442 2344567888999985432210 111111 12456666665432
Q ss_pred ---EEEEecCCCEEEEeCCC
Q 038610 298 ---SVALTRDGHIFSFGRGD 314 (374)
Q Consensus 298 ---~~~lt~~g~vy~~G~n~ 314 (374)
.+.-..+|.|..|-...
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEeCCC
Confidence 44445788999997654
No 77
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=42.50 E-value=79 Score=27.31 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=13.1
Q ss_pred CCeEEEEecCCCEEEEeC
Q 038610 295 GTHSVALTRDGHIFSFGR 312 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~ 312 (374)
..|+++. .+++||++|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4666666 6889999985
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=41.94 E-value=1.6e+02 Score=24.84 Aligned_cols=192 Identities=11% Similarity=-0.032 Sum_probs=101.9
Q ss_pred CCCeEEEeccCc-----eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCe
Q 038610 73 NTKIVQAAIGGW-----HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTH 145 (374)
Q Consensus 73 ~~~i~~i~~G~~-----~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~ 145 (374)
...|..|+.... ..+.-..||.|..|-....++. . ..........|..++.. ..+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------------~-~~~~~~h~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------------I-PKAQQMHTGPVLDVCWSDDGSK 100 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------------E-EEEEEECSSCEEEEEECTTSSE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------------e-EEEeccccCCEEEEEECcCCCE
Confidence 346777776653 4555567899999975432211 0 00000123456666654 335
Q ss_pred EEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEE--CCc--eEEEEecCCcEEEEecCCCCCCCCCCCCCCc
Q 038610 146 SVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAV--GAF--HNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221 (374)
Q Consensus 146 ~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~--g~~--~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~ 221 (374)
.+.-..+|.|..|-.... ...........|..++. ..+ ..+.-..+|.|+.|-.... .
T Consensus 101 l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~ 162 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSN-------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------N 162 (368)
T ss_dssp EEEEETTSEEEEEETTTT-------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------S
T ss_pred EEEEcCCCcEEEEEcCCC-------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------c
Confidence 556678899999965411 11112233366777775 333 3444567888999853221 1
Q ss_pred cceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC--CCcEEEEEccCCe--
Q 038610 222 QPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA--GEDIVQVSCGGTH-- 297 (374)
Q Consensus 222 ~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~-- 297 (374)
....+... ..+..+..-....++.+.++.++.|-...... ....+.... ...+..+......
T Consensus 163 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 163 PMMVLQLP--ERCYCADVIYPMAVVATAERGLIVYQLENQPS------------EFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp CSEEEECS--SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE------------EEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred EEEEEecC--CCceEEEecCCeeEEEeCCCcEEEEEeccccc------------hhhhccccccCCCceEEEcccCCCCC
Confidence 11111111 35666666677788888899999998543211 011111111 1223333333333
Q ss_pred --EEEEecCCCEEEEeCCC
Q 038610 298 --SVALTRDGHIFSFGRGD 314 (374)
Q Consensus 298 --~~~lt~~g~vy~~G~n~ 314 (374)
.++-..+|.|..|-.+.
T Consensus 229 ~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEEEETTSEEEEEESSC
T ss_pred CeEEEecCCCcEEEEecCC
Confidence 56666788888887654
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=41.19 E-value=2.6e+02 Score=27.20 Aligned_cols=197 Identities=13% Similarity=0.074 Sum_probs=101.5
Q ss_pred CeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC----CCeEEE
Q 038610 75 KIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG----GTHSVV 148 (374)
Q Consensus 75 ~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g----~~~~~~ 148 (374)
.|..++... ...+.-..||.|..|-.... . .............|..++.. ..+.+.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~-----------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-T-----------------HKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT-E-----------------EEEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC-C-----------------CccceeccCCcCceEEEEecCCCCCCEEEE
Confidence 466666442 34444557898888853210 0 00011111124567777764 445666
Q ss_pred EecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECC----ceEEEEecCCcEEEEecCCCCCCCCCCCCCCccc
Q 038610 149 LTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGA----FHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223 (374)
Q Consensus 149 lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~----~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p 223 (374)
-..+|.|+.|-...+ . ........ ....|..++... ...+....+|.|..|-...... ...
T Consensus 73 ~s~Dg~I~vwd~~~~----~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~ 138 (753)
T 3jro_A 73 CSYDGKVLIWKEENG----R-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 138 (753)
T ss_dssp EETTSCEEEEEEETT----E-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCC
T ss_pred EeCCCeEEEEECCCC----c-ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------cce
Confidence 678999999965310 0 00111111 225677777653 4566667889999986533211 111
Q ss_pred eeeccCCCCcEEEEEecC---------------CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcE
Q 038610 224 IPVQGLSGLTLVDIAAGG---------------WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDI 288 (374)
Q Consensus 224 ~~~~~~~~~~i~~i~~G~---------------~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i 288 (374)
..+. .....|..++... ...+.-..+|.|+.|-..... ........+. .....|
T Consensus 139 ~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~~~~-~h~~~V 207 (753)
T 3jro_A 139 IIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---------QTYVLESTLE-GHSDWV 207 (753)
T ss_dssp EEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT---------TEEEEEEEEC-CCSSCE
T ss_pred eEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc---------ccceeeeeec-CCCCcE
Confidence 1111 1123566665543 345556778999999643210 0001111111 113467
Q ss_pred EEEEccCC-----eEEEEecCCCEEEEeCCC
Q 038610 289 VQVSCGGT-----HSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 289 ~~i~~G~~-----~~~~lt~~g~vy~~G~n~ 314 (374)
..++.... ..+.-..+|.|+.|-...
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 77776644 344455789999996543
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=37.17 E-value=1.8e+02 Score=24.23 Aligned_cols=206 Identities=7% Similarity=-0.088 Sum_probs=105.3
Q ss_pred CCeEEEecc--Cc-eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC-CCeEEEE
Q 038610 74 TKIVQAAIG--GW-HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG-GTHSVVL 149 (374)
Q Consensus 74 ~~i~~i~~G--~~-~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g-~~~~~~l 149 (374)
..|..++.. .. ..+.-..+|.|+.|-....+++ ..+... .....|..++.. ....+..
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----------------~~~~~~-~~~~~v~~l~~~~~~~l~s~ 118 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-----------------QALTNN-EANLGICRICKYGDDKLIAA 118 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----------------EECBSC-CCCSCEEEEEEETTTEEEEE
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----------------Eecccc-CCCCceEEEEeCCCCEEEEE
Confidence 356666643 34 5666678899999964122221 000000 023445555543 5566667
Q ss_pred ecCCcEEEecCCC-CCCCccC-cccceEeeCCCCeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeec
Q 038610 150 TREGHVWTWGQPW-PPGDIKQ-ISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQ 227 (374)
Q Consensus 150 t~~g~v~~~G~~~-~~~~~~~-~~~p~~i~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~ 227 (374)
..+|.|+.|-... ....... ......+.....|..++...+..++...+|.|+.|-....+. .......
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~ 189 (342)
T 1yfq_A 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEE 189 (342)
T ss_dssp ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEE
T ss_pred cCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeee
Confidence 7889999985431 0000000 000001112356888888777777778889999997543111 0111111
Q ss_pred cCCCCcEEEEEecC---CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC--------CCcEEEEEcc--
Q 038610 228 GLSGLTLVDIAAGG---WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA--------GEDIVQVSCG-- 294 (374)
Q Consensus 228 ~~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~--------~~~i~~i~~G-- 294 (374)
......|..|+... ...++-..+|.|..|-....+.-- .......+.... ...|..++..
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY-------NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST-------TCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc-------ccccceeeecccccccccccceeEEEEEEcCC
Confidence 12224567766653 455566778889998764431000 000011111110 1256666553
Q ss_pred CCeEEEEecCCCEEEEeCC
Q 038610 295 GTHSVALTRDGHIFSFGRG 313 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~G~n 313 (374)
....+.-..+|.|+.|=..
T Consensus 263 ~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp TCCEEEEETTSCEEEEETT
T ss_pred CCEEEEecCCceEEEEcCc
Confidence 3445555678999999654
No 81
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=36.35 E-value=2.1e+02 Score=24.62 Aligned_cols=189 Identities=11% Similarity=0.018 Sum_probs=93.9
Q ss_pred CCeEEEeccC--ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC---CCeEEE
Q 038610 74 TKIVQAAIGG--WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG---GTHSVV 148 (374)
Q Consensus 74 ~~i~~i~~G~--~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g---~~~~~~ 148 (374)
..|..|+... ...+.-..||.|..|-.... + ...........|..++.. ....+.
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~-------------------~~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A-------------------VLKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTT-E-------------------EEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c-------------------EEEEEcCCCCCEEEEEEccCCCceeee
Confidence 3577776543 34444567888888854321 1 000111123456666653 234455
Q ss_pred EecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEEC---CceEEEEecCCcEEEEecCCCCCCCCCCCCCCcccee
Q 038610 149 LTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVG---AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIP 225 (374)
Q Consensus 149 lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g---~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~ 225 (374)
-..+|.|..|-.... ..............+..++.. ....+.-..++.|+.|-.... .+..
T Consensus 200 ~~~dg~v~~wd~~~~----~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------------~~~~ 263 (357)
T 4g56_B 200 CGEDGRILLWDTRKP----KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP------------DSAQ 263 (357)
T ss_dssp EETTSCEEECCTTSS----SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG------------GGCE
T ss_pred eccCCceEEEECCCC----ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC------------cEeE
Confidence 678899999964311 101000001111346666653 222333467888888853221 1111
Q ss_pred eccCCCCcEEEEEecC---CeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCC-CCcEEEEEccC---CeE
Q 038610 226 VQGLSGLTLVDIAAGG---WHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLA-GEDIVQVSCGG---THS 298 (374)
Q Consensus 226 ~~~~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~-~~~i~~i~~G~---~~~ 298 (374)
........|..|+... ...+.-..||.|+.|-... ++ .+..+. ...|..|+... ...
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~---------------~~~~~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE---------------VFRDLSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE---------------EEEECCCSSCEEEEEECSSSTTEE
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc---------------EeEECCCCCCEEEEEEeCCCCCEE
Confidence 1112224677776543 3334456789999995321 11 111111 24677777542 223
Q ss_pred EEEecCCCEEEEeCCC
Q 038610 299 VALTRDGHIFSFGRGD 314 (374)
Q Consensus 299 ~~lt~~g~vy~~G~n~ 314 (374)
+.-..||.|+.|=-..
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 3345789999996543
No 82
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=36.31 E-value=2.1e+02 Score=24.64 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=12.7
Q ss_pred CCeEEEEecCCCEEEE
Q 038610 295 GTHSVALTRDGHIFSF 310 (374)
Q Consensus 295 ~~~~~~lt~~g~vy~~ 310 (374)
....++.+.+|.||++
T Consensus 359 ~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 359 DGKLLIQAKDGTVYSI 374 (376)
T ss_dssp TTEEEEEBTTSCEEEE
T ss_pred CCEEEEEeCCCEEEEE
Confidence 5677778888999887
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=35.32 E-value=2.1e+02 Score=24.46 Aligned_cols=215 Identities=8% Similarity=-0.036 Sum_probs=107.2
Q ss_pred CCCCeEEEeccC---ceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccc--cCCCCcEEEEEeC---C
Q 038610 72 SNTKIVQAAIGG---WHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAG---G 143 (374)
Q Consensus 72 ~~~~i~~i~~G~---~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~--~~~~~~i~~i~~g---~ 143 (374)
....|..++... ...+.-..||.|..|-............. .....+.. ......|..++.. .
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---------AVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------EEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------ccccccccccccCCCcEEEEEEccCCC
Confidence 344688887654 45555667999999975532211110000 00000000 0124567777763 3
Q ss_pred CeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCc-----eEEEEecCCcEEEEecCCCCCCCCCCCC
Q 038610 144 THSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF-----HNLALQEDGALWAWGNNEYGQLGTGDTQ 218 (374)
Q Consensus 144 ~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~-----~~~~l~~~g~v~~~G~n~~gqlG~~~~~ 218 (374)
...+.-..+|.|..|-... ......+.....+..+..... ..++-..+|.|+.|-.....
T Consensus 113 ~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-------- 177 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNT-------LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-------- 177 (408)
T ss_dssp TCEEEEETTSEEEEEETTT-------TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--------
T ss_pred cEEEEEeCCCeEEEeeCCC-------CccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--------
Confidence 4566667789999996541 111112222345555555332 45556788899999643211
Q ss_pred CCccceeeccCCCCcEEEEEecCCe---EEEEecCCCEEEEeCCCCCCCCC-CCC-CCCccccceEeecCCCCcEEEEEc
Q 038610 219 PRSQPIPVQGLSGLTLVDIAAGGWH---STALTDDGEVYGWGRGEHGRLGF-GDN-DKSSKMVPQKVNLLAGEDIVQVSC 293 (374)
Q Consensus 219 ~~~~p~~~~~~~~~~i~~i~~G~~~---~~~lt~~g~vy~wG~n~~gqlG~-~~~-~~~~~~~p~~v~~~~~~~i~~i~~ 293 (374)
....+. .....|..++..... .+.-..+|.|+.|-.......-. -.. .......+..........|..++.
T Consensus 178 ---~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 ---CSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp ---CCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred ---eeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 111111 122457777665432 44567889999998643321100 000 000000000000111245666665
Q ss_pred cC--CeEEEEecCCCEEEEeCCC
Q 038610 294 GG--THSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 294 G~--~~~~~lt~~g~vy~~G~n~ 314 (374)
.. .+.++...+|.|+.|-...
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEecCCCeEEEEECCC
Confidence 43 3556666899999998654
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=34.20 E-value=2.1e+02 Score=24.02 Aligned_cols=214 Identities=12% Similarity=0.035 Sum_probs=103.2
Q ss_pred CCCeEEEecc---CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeC--CCeEE
Q 038610 73 NTKIVQAAIG---GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAG--GTHSV 147 (374)
Q Consensus 73 ~~~i~~i~~G---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g--~~~~~ 147 (374)
...|..++.. ....+.-..||.|+.|-...... .............|..++.. ..+.+
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-----------------VAIFGGVEGHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----------------EEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----------------EEEecccccccCceeEEEECCCCCEEE
Confidence 3467777764 45566667899999996532110 00000001224567777654 34555
Q ss_pred EEecCCcEEEecCCCCC-------------CCccCcc------cceEe---eCCCCeeEEEECCceEEEEecCCcEEEEe
Q 038610 148 VLTREGHVWTWGQPWPP-------------GDIKQIS------VPVRV---QGLEQVKLIAVGAFHNLALQEDGALWAWG 205 (374)
Q Consensus 148 ~lt~~g~v~~~G~~~~~-------------~~~~~~~------~p~~i---~~~~~i~~i~~g~~~~~~l~~~g~v~~~G 205 (374)
....+|.|+.|-..... ....... .|... .....|..++......+.-..+|.|..|-
T Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWK 257 (366)
T ss_dssp EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEE
T ss_pred EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEe
Confidence 56678999999754100 0000000 00000 02255666666566777777889999997
Q ss_pred cCCCCCCCCCCCCCCccceeeccC--CCCcEEEEEe--c--CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceE
Q 038610 206 NNEYGQLGTGDTQPRSQPIPVQGL--SGLTLVDIAA--G--GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK 279 (374)
Q Consensus 206 ~n~~gqlG~~~~~~~~~p~~~~~~--~~~~i~~i~~--G--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~ 279 (374)
.....+.-............+..+ ....|..++. . ....++-..+|.|+.|-...... .......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~ 328 (366)
T 3k26_A 258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP---------HKAKCTT 328 (366)
T ss_dssp ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG---------GGCEEEE
T ss_pred CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC---------ccccceE
Confidence 544222111000000111111111 1112222222 2 34555567788999998542210 0001112
Q ss_pred eecCC-CCcEEEEEccC--CeEEEEecCCCEEEEeC
Q 038610 280 VNLLA-GEDIVQVSCGG--THSVALTRDGHIFSFGR 312 (374)
Q Consensus 280 v~~~~-~~~i~~i~~G~--~~~~~lt~~g~vy~~G~ 312 (374)
+.... ...|..++... ...+.-..+|.|+.|-.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 22211 25676666543 44555567889999854
No 85
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=32.13 E-value=2.7e+02 Score=24.74 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=43.1
Q ss_pred CeeEEEECCceEEEEecCCcEEEEecCCCCCCCCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeC
Q 038610 181 QVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGR 258 (374)
Q Consensus 181 ~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~ 258 (374)
.|.+|++ ....+++..++.|..|=-....+. ..+.... ..+.++.+-....++++++|.|++|--
T Consensus 89 ~V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 89 DVIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp TEEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEECS-SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred CeeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccceee-cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 3999999 767777778888988864432211 1111111 346666666666788899999999964
No 86
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=30.46 E-value=3.9e+02 Score=26.04 Aligned_cols=122 Identities=12% Similarity=0.066 Sum_probs=66.6
Q ss_pred eccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeeccccccc--ccCCCCcEEEEEeC--CCeEEEEecCCcE
Q 038610 80 AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQ--RCAPKLIVRQVAAG--GTHSVVLTREGHV 155 (374)
Q Consensus 80 ~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~--~~~~~~~i~~i~~g--~~~~~~lt~~g~v 155 (374)
+....+.+++|+.|++|.--...-=. .... -.++.. .+...++|..+... ..+.++.|++|.+
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~----------G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~v 577 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQ----------GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 577 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC-------------CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEE
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---cccc----------CeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceE
Confidence 34456688999999999986543211 1000 111222 23357788888765 4467778899988
Q ss_pred EEecCCCCCCCccCcccceEeeCCCCeeEE---EECCceEEEEecCCcEEEEecCCCCCCCC
Q 038610 156 WTWGQPWPPGDIKQISVPVRVQGLEQVKLI---AVGAFHNLALQEDGALWAWGNNEYGQLGT 214 (374)
Q Consensus 156 ~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i---~~g~~~~~~l~~~g~v~~~G~n~~gqlG~ 214 (374)
...-..........-..-..+.....+..+ ..+..+.++++++|++..+-.+.--.+|.
T Consensus 578 k~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 578 FVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp EEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred EEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 775433000000000001111222333332 23677899999999999998766544443
No 87
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=29.63 E-value=2.4e+02 Score=23.31 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=13.8
Q ss_pred cCCCceEEEecC-CcceEEEecCCC
Q 038610 35 LEPYKVRSVVAG-SRNSLAICDDGK 58 (374)
Q Consensus 35 ~~~~~i~~v~~g-~~~~~~l~~~g~ 58 (374)
+.+-++.-..++ ....++++.+|+
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk 109 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGE 109 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSC
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCC
Confidence 344455444455 555666677777
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=29.22 E-value=3e+02 Score=24.28 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=17.3
Q ss_pred CCeEEEeccC--ceeE-EEeCCCcEEEEeC
Q 038610 74 TKIVQAAIGG--WHCL-AVDDQGRAYAWGG 100 (374)
Q Consensus 74 ~~i~~i~~G~--~~~~-~lt~~g~v~~wG~ 100 (374)
.+|..|+--. ...+ .-..||.|..|-.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~ 149 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNF 149 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECS
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEEC
Confidence 3577887542 2233 3467999999953
No 89
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=28.20 E-value=2.8e+02 Score=23.70 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=53.5
Q ss_pred CcEEEEEeC-CCeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECCc--eEEEEecCCcEEEEecCCCC
Q 038610 134 LIVRQVAAG-GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAF--HNLALQEDGALWAWGNNEYG 210 (374)
Q Consensus 134 ~~i~~i~~g-~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~~--~~~~l~~~g~v~~~G~n~~g 210 (374)
..|..++.. ....++-..+|.|..|-.... ................|..++...+ ..+.-..+|.|..|-....
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~--~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~- 171 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEILEK--ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK- 171 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeecccc--ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 346666543 334445567788888854311 1001111111112256777766533 3444467888888843321
Q ss_pred CCCCCCCCCCccceeeccCCCCcEEEEEecC---CeEEEEecCCCEEEEeC
Q 038610 211 QLGTGDTQPRSQPIPVQGLSGLTLVDIAAGG---WHSTALTDDGEVYGWGR 258 (374)
Q Consensus 211 qlG~~~~~~~~~p~~~~~~~~~~i~~i~~G~---~~~~~lt~~g~vy~wG~ 258 (374)
.+..........|..|+... ...+.-..+|.|..|-.
T Consensus 172 -----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 172 -----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp -----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred -----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence 11111111124577776532 34455667889999953
No 90
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=27.92 E-value=4.3e+02 Score=25.74 Aligned_cols=121 Identities=10% Similarity=0.059 Sum_probs=67.1
Q ss_pred EeCCCeEEEEecCCcEEEecCC-CCCCC--ccCcccceEeeCCCCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCCC
Q 038610 140 AAGGTHSVVLTREGHVWTWGQP-WPPGD--IKQISVPVRVQGLEQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLGT 214 (374)
Q Consensus 140 ~~g~~~~~~lt~~g~v~~~G~~-~~~~~--~~~~~~p~~i~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~ 214 (374)
+...++.+++|+.|++|...-. ..... .........+...++|..+.+. ..+.++.|.+|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~--- 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA--- 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC---
T ss_pred ecCCCEEEEEecCCcEEEEEeeecccccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc---
Confidence 3446677889999999997654 11111 1111112223344677777664 34567778889887765433211
Q ss_pred CCCCCCccceeeccCCCCcEEEE---EecCCeEEEEecCCCEEEEeCCCCCCCCC
Q 038610 215 GDTQPRSQPIPVQGLSGLTLVDI---AAGGWHSTALTDDGEVYGWGRGEHGRLGF 266 (374)
Q Consensus 215 ~~~~~~~~p~~~~~~~~~~i~~i---~~G~~~~~~lt~~g~vy~wG~n~~gqlG~ 266 (374)
.....-..+....+..++.+ ..+..+.++++++|++.-+-..+.-.+|.
T Consensus 588 ---~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 588 ---RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp ---CSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred ---cCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 11111111111122333332 23677899999999999988765544443
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=27.73 E-value=2.9e+02 Score=23.61 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=58.6
Q ss_pred CeEEEec--cCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCC---eEEEE
Q 038610 75 KIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HSVVL 149 (374)
Q Consensus 75 ~i~~i~~--G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~---~~~~l 149 (374)
.|..++. .....+.-..+|.|+.|-.. ++ ... ........|..++...+ ..+.-
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~-----------------~~~--~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH-----------------EIF--KEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETT--SC-----------------EEE--EEECSSSCEEEEEECSSCTTEEEEE
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEECC--CC-----------------EEE--EeccCCCcEEEEEECCCCCCEEEEE
Confidence 3555543 34455566678888888642 11 000 00112345666665544 44555
Q ss_pred ecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECC---ceEEEEecCCcEEEEecCC
Q 038610 150 TREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA---FHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 150 t~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~---~~~~~l~~~g~v~~~G~n~ 208 (374)
..++.|..|-....... ......+.....|..++... ...+....+|.|+.|-...
T Consensus 224 ~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDK---NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp ETTSEEEEEEGGGCCST---TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred eCCCEEEEEeCCCCCcc---cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 67888988865411100 01111223346777777654 4555556788999996543
No 92
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=27.63 E-value=2.6e+02 Score=23.10 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=66.7
Q ss_pred EEeCCCeEEEEecCCcEEEecCC-CCCCCc--cCcccceEeeCCCCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCC
Q 038610 139 VAAGGTHSVVLTREGHVWTWGQP-WPPGDI--KQISVPVRVQGLEQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLG 213 (374)
Q Consensus 139 i~~g~~~~~~lt~~g~v~~~G~~-~~~~~~--~~~~~p~~i~~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG 213 (374)
.+.+.++.+++|++|++|.+-.. ...... .....-..+...+.|..+... ..+.+++|++|.+.-.-..++-...
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~ 119 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 119 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC
Confidence 34456778999999999998654 111110 111111123333677777663 4457788999988777654431111
Q ss_pred CCCCCCCccceeeccC-CCCcEEEEE---ecCCeEEEEecCCCEEEEeCCCCCCCCC
Q 038610 214 TGDTQPRSQPIPVQGL-SGLTLVDIA---AGGWHSTALTDDGEVYGWGRGEHGRLGF 266 (374)
Q Consensus 214 ~~~~~~~~~p~~~~~~-~~~~i~~i~---~G~~~~~~lt~~g~vy~wG~n~~gqlG~ 266 (374)
.+ -..+..+ .+..++.+. .+..+.+++|++|.+.-+--++.-.+|.
T Consensus 120 r~-------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 120 RA-------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp TT-------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred cC-------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 00 0111111 123333322 2567889999999988887665544443
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=26.07 E-value=3.1e+02 Score=23.40 Aligned_cols=191 Identities=11% Similarity=0.010 Sum_probs=97.6
Q ss_pred CCeEEEeccCc---eeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC---CeEE
Q 038610 74 TKIVQAAIGGW---HCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG---THSV 147 (374)
Q Consensus 74 ~~i~~i~~G~~---~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~---~~~~ 147 (374)
..|..++.... ..+.-..||.|..|-...... ............|..++... ...+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------------------TSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------------------EEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------------------ceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 35677765543 455556788898886542110 00000011245677776644 4455
Q ss_pred EEecCCcEEEecCCCCCCCccCcccceEeeCC----CCeeEEEEC--CceEEEEecCCcEEEEecCCCCCCCCCCCCCCc
Q 038610 148 VLTREGHVWTWGQPWPPGDIKQISVPVRVQGL----EQVKLIAVG--AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRS 221 (374)
Q Consensus 148 ~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~----~~i~~i~~g--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~ 221 (374)
.-..+|.|..|-... .....+... ..|..++.. ....+.-..+|.|+.|-.. +
T Consensus 136 s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~----------- 194 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG--------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--G----------- 194 (383)
T ss_dssp EEETTTEEEEEETTS--------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--S-----------
T ss_pred EEeCCCEEEEEECCC--------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--C-----------
Confidence 557789999996541 111111111 335555443 3445555677888888541 1
Q ss_pred cceeeccCCCCcEEEEEecCC---eEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccC---
Q 038610 222 QPIPVQGLSGLTLVDIAAGGW---HSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGG--- 295 (374)
Q Consensus 222 ~p~~~~~~~~~~i~~i~~G~~---~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--- 295 (374)
.+..........|..++...+ ..+.-..+|.|+.|-....... ......+. ....|..++...
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------~~~~~~~~--~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK---------NSYIAEMP--HEKPVNAAYFNPTDS 263 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST---------TCEEEEEE--CSSCEEEEEECTTTS
T ss_pred CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc---------cceEEEec--CCCceEEEEEcCCCC
Confidence 111111112246777766544 3444567888999874321100 00111111 234666666543
Q ss_pred CeEEEEecCCCEEEEeCCC
Q 038610 296 THSVALTRDGHIFSFGRGD 314 (374)
Q Consensus 296 ~~~~~lt~~g~vy~~G~n~ 314 (374)
...++-..+|.|+.|-...
T Consensus 264 ~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEESSSEEEEEETTB
T ss_pred CEEEEEcCCCcEEEEECCC
Confidence 4455556788899997543
No 94
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=24.85 E-value=2.9e+02 Score=22.63 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=11.0
Q ss_pred eEEEEecCCCEEEEe
Q 038610 243 HSTALTDDGEVYGWG 257 (374)
Q Consensus 243 ~~~~lt~~g~vy~wG 257 (374)
..++++.+|+||+..
T Consensus 221 ~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA 235 (296)
T ss_dssp CSEEEBTTSCEEEEE
T ss_pred CeEEECCCCCEEEEc
Confidence 356777888888766
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=23.55 E-value=3.6e+02 Score=23.28 Aligned_cols=114 Identities=8% Similarity=-0.057 Sum_probs=61.6
Q ss_pred CCCeEEEecc---CceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCCC---eE
Q 038610 73 NTKIVQAAIG---GWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGT---HS 146 (374)
Q Consensus 73 ~~~i~~i~~G---~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~~---~~ 146 (374)
...|..++.. ....+.-..||.|..|-....+...... ............|..++.... ..
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~p~~~~~l 147 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------------EPVITLEGHTKRVGIVAWHPTAQNVL 147 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-------------SCSEEEECCSSCEEEEEECSSBTTEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-------------CceEEecCCCCeEEEEEECcCCCCEE
Confidence 3468888764 4455556679999999755432211000 000011112456777766543 44
Q ss_pred EEEecCCcEEEecCCCCCCCccCcccceEe--e-CCCCeeEEEEC--CceEEEEecCCcEEEEec
Q 038610 147 VVLTREGHVWTWGQPWPPGDIKQISVPVRV--Q-GLEQVKLIAVG--AFHNLALQEDGALWAWGN 206 (374)
Q Consensus 147 ~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i--~-~~~~i~~i~~g--~~~~~~l~~~g~v~~~G~ 206 (374)
+.-..+|.|+.|-.... .....+ . ....|..++.. ....+.-..+|.|+.|-.
T Consensus 148 ~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 148 LSAGCDNVILVWDVGTG-------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EEEETTSCEEEEETTTT-------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEEcCCCEEEEEECCCC-------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 55567899999975411 111122 1 22557777664 334455567888888854
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=23.10 E-value=3.9e+02 Score=23.51 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCcEEEEEeC---CCeEEEEecCCcEEEecCCCCCCCccCcccceEeeCCCCeeEEEECC--ceEEEEecCCcEEEEecC
Q 038610 133 KLIVRQVAAG---GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGA--FHNLALQEDGALWAWGNN 207 (374)
Q Consensus 133 ~~~i~~i~~g---~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~n 207 (374)
...|..|+.. ....+.-..++.|.+|-........... ........|..++... ...+.-..+|.|..|-..
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL---YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS---BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE---EeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence 3457777653 2233344578888888543111111000 0011224566665433 344445678899998643
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=22.62 E-value=3.4e+02 Score=22.63 Aligned_cols=66 Identities=5% Similarity=-0.010 Sum_probs=35.9
Q ss_pred cEEEEEeC--CCeEEEEecCCcEEEecCCCCCCCccCcccceEee-CCCCeeEEEECC--ceEEEEecCCcEEEEec
Q 038610 135 IVRQVAAG--GTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ-GLEQVKLIAVGA--FHNLALQEDGALWAWGN 206 (374)
Q Consensus 135 ~i~~i~~g--~~~~~~lt~~g~v~~~G~~~~~~~~~~~~~p~~i~-~~~~i~~i~~g~--~~~~~l~~~g~v~~~G~ 206 (374)
.+..++.. ..+.++-+.+|.|+.|-.... ......+. ....|..++... ...++...+|.|+.|-.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 45555443 335555677899999865410 01111122 225677776643 34445566788888853
No 98
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=21.55 E-value=4.2e+02 Score=23.33 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=66.1
Q ss_pred EEeCCCeEEEEecCCcEEEecCC-CCCCCcc----CcccceEeeCCCCeeEEEEC-----CceEEEEecCCcEEEEecCC
Q 038610 139 VAAGGTHSVVLTREGHVWTWGQP-WPPGDIK----QISVPVRVQGLEQVKLIAVG-----AFHNLALQEDGALWAWGNNE 208 (374)
Q Consensus 139 i~~g~~~~~~lt~~g~v~~~G~~-~~~~~~~----~~~~p~~i~~~~~i~~i~~g-----~~~~~~l~~~g~v~~~G~n~ 208 (374)
++.+.++.+++|+.|++|.+-.. ....... .......+...+.|+.+..- ..+.+++|++|.+--.-...
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 44456668889999999987643 1111111 11111123334677777653 34678889999887776554
Q ss_pred CCCCCCCCCCCCccceeeccCCCCcEEEE--EecCCeEEEEecCCCEEEEeCCCCCCCC
Q 038610 209 YGQLGTGDTQPRSQPIPVQGLSGLTLVDI--AAGGWHSTALTDDGEVYGWGRGEHGRLG 265 (374)
Q Consensus 209 ~gqlG~~~~~~~~~p~~~~~~~~~~i~~i--~~G~~~~~~lt~~g~vy~wG~n~~gqlG 265 (374)
|-... ..--..+..-.+..++.+ ..+....+++|++|++.-+-..+.-..|
T Consensus 133 ~~~~~------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 133 FAFRL------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GCSCC------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred hhccc------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 43211 000111111123444443 3456788999999998877544433333
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=20.26 E-value=3.6e+02 Score=22.05 Aligned_cols=205 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred EEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCC-CCcEEEEEeC----CCeEEEEec
Q 038610 77 VQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAP-KLIVRQVAAG----GTHSVVLTR 151 (374)
Q Consensus 77 ~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~-~~~i~~i~~g----~~~~~~lt~ 151 (374)
..++......+.-..||.|..|-...... .......+.. ...|..++.. ....+.-..
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSC-----------------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Q ss_pred CCcEEEecCCCCCCCccCcccceEeeCC---CCeeEEEEC----CceEEEEecCCcEEEEecCCCCCCCCCCCCCCccce
Q 038610 152 EGHVWTWGQPWPPGDIKQISVPVRVQGL---EQVKLIAVG----AFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPI 224 (374)
Q Consensus 152 ~g~v~~~G~~~~~~~~~~~~~p~~i~~~---~~i~~i~~g----~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~ 224 (374)
+|.|..|-.................... ..|..++.. ....+....+|.|+.|-......+..-.........
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Q ss_pred eecc-CCCCcEEEEEec-----CCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEEccCCe-
Q 038610 225 PVQG-LSGLTLVDIAAG-----GWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTH- 297 (374)
Q Consensus 225 ~~~~-~~~~~i~~i~~G-----~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~- 297 (374)
.+.. .....+..+... ....++-..++.+..|-. ......+..........|..++...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG------------KDGKLHVAAKLPGHKSLIRSISWAPSIG 227 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC------------TTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc------------CCCceeeeeecCCCCcceeEEEECCCCC
Q ss_pred -----EEEEecCCCEEEE
Q 038610 298 -----SVALTRDGHIFSF 310 (374)
Q Consensus 298 -----~~~lt~~g~vy~~ 310 (374)
.+.-..||.|..|
T Consensus 228 ~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 228 RWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp CSSEEEEEEETTSCEEEE
T ss_pred CcceEEEEEcCCCeEEEE
Done!