BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038611
(837 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 150/353 (42%), Gaps = 48/353 (13%)
Query: 105 LPTETLVGEKTKKVVEIIWENLMGDKAPK--IGVWGMGGIGKTTIMKE-INNRLQKETNK 161
+P +V KK+V I + L K + + GM G GK+ + E + + E
Sbjct: 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF 178
Query: 162 FNVVIWVTVSQPLD---LIKLQT-----EIATALKESLPENEDKVSRAGRLLGMLKAKAK 213
V WV+V + L+KLQ + + + LP N ++ R+L ML+ +
Sbjct: 179 PGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRIL-MLRKHPR 237
Query: 214 FVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSMKCKQVEVEL---LSKEE 270
+LILDD+W+++ L+ ++ C++++TTR V S+ + V + L KE+
Sbjct: 238 SLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEK 290
Query: 271 AFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNE 330
+ V +P E +SI++EC PL + + A + W+ L +
Sbjct: 291 GLEILSLFVNMKKADLP----EQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQ 344
Query: 331 LRG----RLRSLNDVDTKVFGR-LEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDY 385
L+ R+R + D + + S L+ E ++ + ++ K+ + L
Sbjct: 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCIL 403
Query: 386 WIAEGVIEELKDVQAKYDRGHTILNRLVNCCLLESARYGRCVK--MHDLIRDM 436
W E EE++D IL VN LL R G+ + +HDL D
Sbjct: 404 WDME--TEEVED----------ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Query: 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFT 525
A+ +++ L N + +PS L L L N LQ +P F + L+ L ++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95
Query: 526 AIEVLPNSVSD-LMNLISLLLQRCRRLKRVPS--VAKLLALQHLDLRGTSIEEVPEGM-Q 581
++ LP V D L+NL L L R +LK +P L L +L L ++ +P+G+
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 582 MLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
L +L L LY+ LK +P G +L +L L L
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA 526
NLE + + N + +P + L+ L L RN L+ +P F + L L+L +
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 527 IEVLPNSVSDLMNLISLLLQRCRRLKRVPSVA--KLLALQHLDLRGTSIEEVPEG-MQML 583
++ LP V D + + L +LKRVP A KL L+ L L ++ VPEG L
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 584 ENLSHLYLYSPP 595
E L L L P
Sbjct: 205 EKLKMLQLQENP 216
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 69/394 (17%)
Query: 67 ASLGKDAEEKIEEVKKYHQKACSFTSLVIVAPPSRGVMLPTETLVGEKTKKVVEIIWENL 126
+S GKD + I + T L P R V+ T KK+V I + L
Sbjct: 96 SSSGKDTDGGITSFVR--------TVLCEGGVPQRPVIFVTR-------KKLVHAIQQKL 140
Query: 127 --MGDKAPKIGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQ 180
+ + + ++GM G GK+ + E + + E V WV++ + L+KLQ
Sbjct: 141 WKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200
Query: 181 T-----EIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEP 235
+ + + LP N ++ R+L ML+ + +LILDD+W+ + L+
Sbjct: 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF----- 254
Query: 236 NKENGCKLVITTRSYRVCRSMKCKQVEVEL---LSKE---EAFNLFIDRVGSSILQVPTL 289
+N C++++TTR V S+ + V + L +E E +LF++ ++ L
Sbjct: 255 --DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN------MKKEDL 306
Query: 290 NREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRG----RLRSLNDVDTKV 345
E +SI++EC PL + + A + + W L +L+ R+R + D +
Sbjct: 307 PAE-AHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA 363
Query: 346 FGR-LEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDR 404
+ S L+ E ++ + ++ K+ + L W E EE++D
Sbjct: 364 LDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED------- 413
Query: 405 GHTILNRLVNCCLLESARYGR--CVKMHDLIRDM 436
IL VN LL R G+ C +HDL D
Sbjct: 414 ---ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 151/353 (42%), Gaps = 48/353 (13%)
Query: 105 LPTETLVGEKTKKVVEIIWENLMGDKAPK--IGVWGMGGIGKTTIMKE-INNRLQKETNK 161
+P +V KK+V I + L K + + GM G GK+ + E + + E
Sbjct: 125 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF 184
Query: 162 FNVVIWVTVSQPLD---LIKLQT-----EIATALKESLPENEDKVSRAGRLLGMLKAKAK 213
V WV+V + L+KLQ + + + LP N ++ R+L ML+ +
Sbjct: 185 PGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRIL-MLRKHPR 243
Query: 214 FVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSMKCKQVEVEL---LSKEE 270
+LILDD+W+++ L+ ++ C++++TTR V S+ + V + L KE+
Sbjct: 244 SLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEK 296
Query: 271 AFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNE 330
+ V +P E +SI++EC PL + + A + + W+ L +
Sbjct: 297 GLEILSLFVNMKKADLP----EQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQ 350
Query: 331 LRG----RLRSLNDVDTKVFGR-LEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDY 385
L+ R+R + D + + S L+ E ++ + ++ K+ + L
Sbjct: 351 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCIL 409
Query: 386 WIAEGVIEELKDVQAKYDRGHTILNRLVNCCLLESARYGRCVK--MHDLIRDM 436
W E EE++D IL VN LL R G+ + +HDL D
Sbjct: 410 WDME--TEEVED----------ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 29/161 (18%)
Query: 465 KANLERVSLM-------MNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGL 517
KANL++ S+ +N ID+I +N S + +Q++P + + G
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG---------IQYLPNVRYLALGGN 73
Query: 518 KILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPS--VAKLLALQHLDLRGTSIEE 575
K+ ++S ++ +L NL L+L +L+ +P+ KL L+ L L ++
Sbjct: 74 KLHDIS---------ALKELTNLTYLIL-TGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 576 VPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P+G+ L NL++LYLY L+ LP G+ +L L RL L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 447 FMVKAREHLLEFP-GEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQW 505
+++ L P G + NL+ + L+ N + +P + L+ L L N LQ
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN-QLQS 147
Query: 506 IPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQH 565
+P+ F + L L+L ++ LP V D KL L+
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD----------------------KLTQLKQ 185
Query: 566 LDLRGTSIEEVPEGM-QMLENLSHLYLYSPP 595
L L ++ VP+G+ L +L+H++L + P
Sbjct: 186 LSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
Query: 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA 526
NL + L N + +P+ + L L+L N LQ +P+ F + L LNL+
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 527 IEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGM-QMLEN 585
++ LP V D KL L LDL ++ +PEG+ L
Sbjct: 145 LQSLPKGVFD----------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 586 LSHLYLYSPPLKELPAGLLPRLRKL 610
L L LY LK +P G+ RL L
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 23/171 (13%)
Query: 465 KANLERVSLM-------MNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPE--------C 509
KANL++ S+ +N ID+I +N S +I S +Q N++++
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNS---DIKSVQGIQYLPNVRYLALGGNKLHDIS 79
Query: 510 FFAHMHGLKILNLSFTAIEVLPNSVSD-LMNLISLLLQRCRRLKRVPS--VAKLLALQHL 566
+ L L L+ ++ LPN V D L NL L+L +L+ +P KL L +L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYL 138
Query: 567 DLRGTSIEEVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
+L ++ +P+G+ L NL+ L L L+ LP G+ +L +L L LY
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA 526
NL+ + L+ N + +P + L+ L L N LQ +P+ F + L L+LS+
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 527 IEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGM-QMLEN 585
++ LP V D KL L+ L L ++ VP+G+ L +
Sbjct: 169 LQSLPEGVFD----------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTS 206
Query: 586 LSHLYLYSPP 595
L +++L+ P
Sbjct: 207 LQYIWLHDNP 216
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 165/394 (41%), Gaps = 69/394 (17%)
Query: 67 ASLGKDAEEKIEEVKKYHQKACSFTSLVIVAPPSRGVMLPTETLVGEKTKKVVEIIWENL 126
+S GKD + I + T L P R V+ T KK+V I + L
Sbjct: 103 SSSGKDTDGGITSFVR--------TVLCEGGVPQRPVIFVTR-------KKLVHAIQQKL 147
Query: 127 --MGDKAPKIGVWGMGGIGKTTIMKE-INNRLQKETNKFNVVIWVTVSQPLD---LIKLQ 180
+ + + ++GM G GK+ + E + + E V WV++ + L+KLQ
Sbjct: 148 WKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 207
Query: 181 T-----EIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEP 235
+ + + LP N ++ R+L ML+ + +LILDD+W+ + L+
Sbjct: 208 NLCMRLDQEESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF----- 261
Query: 236 NKENGCKLVITTRSYRVCRSMKCKQVEVEL---LSKE---EAFNLFIDRVGSSILQVPTL 289
+N C++++TT V S+ + V + L +E E +LF++ ++ L
Sbjct: 262 --DNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN------MKKEDL 313
Query: 290 NREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRG----RLRSLNDVDTKV 345
E +SI++EC PL + + A + + W L +L+ R+R + D +
Sbjct: 314 PAE-AHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA 370
Query: 346 FGR-LEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDR 404
+ S L+ E ++ + ++ K+ + L W E EE++D
Sbjct: 371 LDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED------- 420
Query: 405 GHTILNRLVNCCLLESARYGR--CVKMHDLIRDM 436
IL VN LL R G+ C +HDL D
Sbjct: 421 ---ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFT 525
A + L N + +P+ + L+ L L N LQ +P F + L LNLS
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 526 AIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGM-QMLE 584
++ LPN V D KL L+ L L ++ +P+G+ L
Sbjct: 87 QLQSLPNGVFD----------------------KLTQLKELALNTNQLQSLPDGVFDKLT 124
Query: 585 NLSHLYLYSPPLKELPAGLLPRLRKL 610
L L LY LK +P G+ RL L
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSL 150
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 565 HLDLRGTSIEEVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+LDL S++ +P G+ L +L+ LYL L+ LP G+ +L L L+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRL 551
L L L N L +P F + L +L+L + VLP++V D + + L C +L
Sbjct: 66 LKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 552 KRVP-SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPP 595
+P + +L L HL L ++ +P G L +L+H YL+ P
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 511 FAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVA--KLLALQHLDL 568
F + LK L L + LP V D + +++L +L +PS +L+ L+ L +
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 569 RGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
+ E+P G++ L +L+HL L LK +P G RL L L+
Sbjct: 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAI- 527
+R+ L N I +P+ C L+ L L N+ L I F + L+ L+LS A
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 528 -EVLPNSVSDLMNLISLLLQRCRRLKRVPSVAK-LLALQHLDLRGTSIEEVPE-GMQMLE 584
V P + L L +L L RC + P + + L ALQ+L L+ +++ +P+ + L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 585 NLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
NL+HL+L+ + +P L L RL L+
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 184
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQRCRR 550
L TL L R LQ + F + L+ L L A++ LP+ + DL NL L L R
Sbjct: 106 LHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NR 163
Query: 551 LKRVPSVA--KLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLLPRL 607
+ VP A L +L L L + V P + L L LYL++ L LP L L
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 608 RKLCRLSL 615
R L L L
Sbjct: 224 RALQYLRL 231
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAI- 527
+R+ L N I +P+ C L+ L L N+ L I F + L+ L+LS A
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 528 -EVLPNSVSDLMNLISLLLQRCRRLKRVPSVAK-LLALQHLDLRGTSIEEVPE-GMQMLE 584
V P + L L +L L RC + P + + L ALQ+L L+ +++ +P+ + L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 585 NLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
NL+HL+L+ + +P L L RL L+
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQRCRR 550
L TL L R LQ + F + L+ L L A++ LP+ + DL NL L L R
Sbjct: 107 LHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NR 164
Query: 551 LKRVPSVA--KLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLLPRL 607
+ VP A L +L L L + V P + L L LYL++ L LP L L
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 608 RKLCRLSL 615
R L L L
Sbjct: 225 RALQYLRL 232
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFT 525
A+ +R+ L N I +P+ C L+ L L N L I F + L+ L+LS
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNA-LAGIDAAAFTGLTLLEQLDLSDN 89
Query: 526 A-IEVL-PNSVSDLMNLISLLLQRCRRLKRVPSVAK-LLALQHLDLRGTSIEEVPEG-MQ 581
A + V+ P + L +L +L L RC + P + + L ALQ+L L+ +++ +P+ +
Sbjct: 90 AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 582 MLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
L NL+HL+L+ + +P L L RL L+
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRCRR 550
L TL L R LQ + F + L+ L L ++ LP N+ DL NL L L
Sbjct: 106 LHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHG--- 161
Query: 551 LKRVPSVAK-----LLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLL 604
R+PSV + L +L L L + V P + L L LYL++ L LPA +L
Sbjct: 162 -NRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVL 220
Query: 605 PRLRKLCRLSL 615
LR L L L
Sbjct: 221 VPLRSLQYLRL 231
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 488 HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQR 547
C TL+ +NI L +P L + N T +E P L+NL L
Sbjct: 9 QCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNS 66
Query: 548 CRRLKRVPS--VAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPP 595
+L +P+ KL L LDL ++ +P G L++L+H+YLY+ P
Sbjct: 67 -NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFA-- 512
L E P + A LE ++L N + +P++++ L L ++ L +PE +
Sbjct: 116 LXELPDTXQQFAGLETLTLARNPLRALPASIA-SLNRLRELSIRACPELTELPEPLASTD 174
Query: 513 ------HMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHL 566
+ L+ L L +T I LP S+++L NL SL ++ P++ L L+ L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Query: 567 DLRG-TSIEEVP 577
DLRG T++ P
Sbjct: 235 DLRGCTALRNYP 246
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 516 GLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSV----------AKLLALQH 565
GL+ L L+ + LP S++ L L L ++ C L +P L+ LQ
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 566 LDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGL--LPRLRKL 610
L L T I +P + L+NL L + + PL L + LP+L +L
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 551 LKRVPSVA-KLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGL--LPRL 607
L + P A +L LQH + + E+P+ Q L L L PL+ LPA + L RL
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 608 RKL 610
R+L
Sbjct: 153 REL 155
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Query: 478 IDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDL 537
+D +PS + E L ++ L + + F + L LNL + ++ L V D
Sbjct: 26 LDSVPSGIPADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 538 MNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSP 594
+ + L +L +P L L L L G ++ +P G+ L L L L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 595 PLKELPAGLLPRLRKLCRLSL 615
L+ +PAG +L L LSL
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSL 162
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRL 551
L TL L N L +P F H+ L L L ++ LP+ V D + + L +L
Sbjct: 85 LGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 552 KRVPSVA--KLLALQHLDLRGTSIEEVPEG 579
+ +P+ A KL LQ L L ++ VP G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Query: 478 IDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDL 537
+D +PS + E L ++ L + + F + L LNL + ++ L V D
Sbjct: 26 LDSVPSGIPADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 538 MNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSP 594
+ + L +L +P L L L L G ++ +P G+ L L L L +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 595 PLKELPAGLLPRLRKLCRLSL 615
L+ +PAG +L L LSL
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSL 162
Score = 36.2 bits (82), Expect = 0.080, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRL 551
L TL L N L +P F H+ L L L ++ LP+ V D + + L +L
Sbjct: 85 LGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 552 KRVPSVA--KLLALQHLDLRGTSIEEVPEG 579
+ +P+ A KL LQ L L ++ VP G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL ND+ E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLL 179
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 549 RRLKRVPS--VAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSPPLKELPAGLLP 605
RRL +P+ + + L HL+LR +IEE+P + LENL + S L+++P G+
Sbjct: 133 RRLTHIPANLLTDMRNLSHLELRA-NIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFG 191
Query: 606 RLRKLCRLSL 615
++ KL +L+L
Sbjct: 192 KMPKLKQLNL 201
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N++ E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N++ E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N++ E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N++ E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N++ E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 200
Query: 512 AHMHG 516
A +HG
Sbjct: 201 AFLHG 205
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 80 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 180
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 473 LMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532
L N I EI N + + L L L N NL+ +P F G IL++S T I LP+
Sbjct: 161 LNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 533 SVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDL 568
L NL L + LK++P++ KL+AL L
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 550 RLKRVPSVAKLL-ALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRL 607
+L+ +P + + L AL LD+ + +P G ++ L L LYL LK LP GLL
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 608 RKLCRLSL 615
KL +LSL
Sbjct: 148 PKLEKLSL 155
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 459 PGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECF-------F 511
PG LE++SL N + E+P+ + E L TLLLQ N +L IP+ F F
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPF 199
Query: 512 AHMHG 516
A +HG
Sbjct: 200 AFLHG 204
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIE 574
L L+LS ++ LP + + +++L RL +P ++ L LQ L L+G ++
Sbjct: 79 LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 575 EVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
+P G+ L L L + L ELPAGLL L L L L
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 116 KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVV---IWVTVSQ 172
+++ E++ L G+K ++G+ G GKT + + + RL+ + V+ I+V
Sbjct: 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88
Query: 173 PLDLIKLQTEIATALKESLPEN--------EDKVSRAGRLLGMLKAKAKFVLILDDM 221
++ + IA A+ +P E V R RL G+ ++++LD++
Sbjct: 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGI------YIIVLDEI 139
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 24/127 (18%)
Query: 470 RVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV 529
R+ L N + +P + L+ L L +N +Q +P+ F + L IL L ++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 530 LPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSH 588
LPN V D KL L+ L L ++ VP+G+ L +L
Sbjct: 91 LPNGVFD----------------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128
Query: 589 LYLYSPP 595
++L++ P
Sbjct: 129 IWLHTNP 135
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 559 KLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
KL L L L I+ +P+G+ L L+ LYL+ L+ LP G+ +L +L L+L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 473 LMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532
L N I EI N + + L L L N NL+ +P F G IL++S T I LP+
Sbjct: 161 LNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 533 SVSDLMNLISLLLQRCRRLKRVPSVAKLLAL 563
L NL L + LK++P++ KL+AL
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPTLEKLVAL 248
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
E KVV+++ G K IG++G G+GKT ++E+ N + K F+V V
Sbjct: 168 ETGIKVVDLLAPYARGGK---IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 220
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
E KVV+++ G K IG++G G+GKT ++E+ N + K F+V V
Sbjct: 141 ETGIKVVDLLAPYARGGK---IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
E KVV+++ G K IG++G G+GKT ++E+ N + K F+V V
Sbjct: 130 ETGIKVVDLLAPYARGGK---IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
E KVV+++ G K IG++G G+GKT ++E+ N + K F+V V
Sbjct: 141 ETGIKVVDLLAPYARGGK---IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 193
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
E KVV+++ G K IG++G G+GKT ++E+ N + K F+V V
Sbjct: 135 ETGIKVVDLLAPYARGGK---IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 187
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
E KVV+++ G K IG++G G+GKT ++E+ N + K F+V V
Sbjct: 130 ETGIKVVDLLAPYARGGK---IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGV 182
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 105 LPTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 164
L TE + E KVV+++ + K KIG++G G+GKT +++E+ + + +E +V
Sbjct: 128 LATEVEILETGIKVVDLLAPYI---KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184
Query: 165 VIWV 168
V
Sbjct: 185 FAGV 188
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 566 LDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
LDL I+ +P+ + LE L L + S LK +P G+ RL L ++ L+
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 541 ISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSPP 595
I +L ++K +P V KL ALQ L++ ++ VP+G+ L +L ++L++ P
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT +++E+ N + +E +V V
Sbjct: 143 KGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGV 181
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 518 KILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPS--VAKLLALQHLDLRGTSIEE 575
++L+L I L V D + ++ L +L +P KL L HL L ++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 576 VPEGM-QMLENLSHLYLYSPP 595
+P G+ L++L+H+YL++ P
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNP 123
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 520 LNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSV-AKLLALQHLDLRGTSIEEVPE 578
+N ++ +P + ++ L + + +L+ P V L L +L+L + +P
Sbjct: 24 VNCQERSLASVPAGIPTTTQVLHLYINQITKLE--PGVFDSLTQLTYLNLAVNQLTALPV 81
Query: 579 GM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
G+ L L+HL L+ LK +P G+ L+ L + L+
Sbjct: 82 GVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLF 120
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 198 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 236
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 140 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 178
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 150 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 188
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168
K KIG++G G+GKT ++ E+ N + K ++V V
Sbjct: 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 463 EWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNL 522
E+ + L + L N I+ IPS L L L L++I E F + L+ LNL
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Query: 523 SFTAIEVLPNSVSDLMNLISLLLQRCR-RLKRVPSVAKLLALQHLDLRGTSIEEVP-EGM 580
++ +PN ++ L+ L L L R L R S L +L+ L L + +
Sbjct: 164 GMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAF 222
Query: 581 QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
L++L L L L LP L L +L R+ L
Sbjct: 223 DDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Query: 463 EWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNL 522
E+ + L + L N I+ IPS L L L L++I E F + L+ LNL
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Query: 523 SFTAIEVLPNSVSDLMNLISLLLQRCR-RLKRVPSVAKLLALQHLDLRGTSIEEVPE-GM 580
++ +PN ++ L+ L L L R L R S L +L+ L L + +
Sbjct: 164 GMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAF 222
Query: 581 QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615
L++L L L L LP L L +L R+ L
Sbjct: 223 DDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 27/139 (19%)
Query: 478 IDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDL 537
+ E+P + + L+ L++ NI Q I F H+H L++L L +I
Sbjct: 66 LSEVPQGIPSNTRYLN--LMENNI--QMIQADTFRHLHHLEVLQLGRNSI---------- 111
Query: 538 MNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPL 596
R V + L +L L+L + +P G + L L L+L + P+
Sbjct: 112 ------------RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159
Query: 597 KELPAGLLPRLRKLCRLSL 615
+ +P+ R+ L RL L
Sbjct: 160 ESIPSYAFNRVPSLMRLDL 178
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 3/159 (1%)
Query: 460 GEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKI 519
G E+ + L + L N I+ IPS L L L L++I E F + LK
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200
Query: 520 LNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVP- 577
LNL I+ +PN ++ L+ L L + + P S L +L+ L + + + +
Sbjct: 201 LNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 578 EGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616
L +L L L L LP L LR L L L+
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes
pdb|2ESR|B Chain B, Conserved Hypothetical Protein- Streptococcus Pyogenes
Length = 177
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 666 LMLSPDYVGDSVIADLEVDRSVCLIANKI---CEKEKPIVLPEDVQCLEMF--EVYDIAS 720
+ L P Y ++++A +E + L++ ++ CE +K ++LP+++ L ++ ++Y I+
Sbjct: 104 VFLDPPYAKETIVATIEALAAKNLLSEQVXVVCETDKTVLLPKEIATLGIWKEKIYGISK 163
Query: 721 L 721
+
Sbjct: 164 V 164
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 60/289 (20%)
Query: 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA 526
NL+ + L +D+D++ + H T L+ NI+ C + +SF+A
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS------CLASE--------VSFSA 202
Query: 527 IEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENL 586
+E L V+ NL SL L R L+++ ++ + R +EE+ G E
Sbjct: 203 LERL---VTRCPNLKSLKLNRAVPLEKLATLLQ---------RAPQLEELGTGGYTAEVR 250
Query: 587 SHLYLYSPPLKELPAGLLPRLRKLCRLSLYFG-WEALEETVEETGRLSDRLDTFEGHFSK 645
+Y +GL L L G W+A+ + + RL T ++
Sbjct: 251 PDVY----------SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 646 LNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPE 705
+ ++++ + ++ ++ DY+ D A LEV S C +
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVL---DYIED---AGLEVLASTC----------------K 338
Query: 706 DVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKN 754
D++ L +F +V EQGLV++ L+ + Y+C + N
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTN 386
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 563 LQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLL 604
L+ +DL I E+ P+ Q L +L+ L LY + ELP L
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 563 LQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLL 604
L+ +DL I E+ P+ Q L +L+ L LY + ELP L
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 245 ITTRSYRVCRSMKCKQVEVELLSKEEAFNLFIDRVGS 281
+ +R+ C S K K V V +LS+E+ FN+F++R+ +
Sbjct: 347 VMSRAGERCGSDK-KHVRVSMLSREDVFNVFLERLAN 382
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 245 ITTRSYRVCRSMKCKQVEVELLSKEEAFNLFIDRVGS 281
+ +R+ C S K K V V +LS+E+ FN+F++R+ +
Sbjct: 347 VMSRAGERCGSDK-KHVRVSMLSREDVFNVFLERLAN 382
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 84 HQKACSFTSLVIVAPPSRGVMLPTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIG 143
H+ A +FT L T+ + E KVV ++ G K IG++G G+G
Sbjct: 133 HRSAPAFTQL------------DTKLSIFETGIKVVNLLAPYRRGGK---IGLFGGAGVG 177
Query: 144 KTTIMKEINNRLQK 157
KT ++ E+ N + K
Sbjct: 178 KTVLIMELINNIAK 191
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 566 LDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL 610
LDL I +P+ + L+ L L + S LK +P G+ RL L
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 119/271 (43%), Gaps = 43/271 (15%)
Query: 113 EKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKE-TNKFNVVIWVTVS 171
++ +K+ I+ +K I ++G+ G GKT ++K + ++L K+ KF V ++
Sbjct: 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV-YINTR 85
Query: 172 QPLDLIKLQTEIATALKESLPENEDKVSR-AGRLLGMLKAKAKFVLILDDMWEAFPLEKV 230
Q ++ ++ +L +P ++ RL+ ++ V+I+ D +AF
Sbjct: 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF----- 140
Query: 231 GIPEPNKENGCKLVITTRSYRVCRSMKCKQVEVELLSKEEAFNLFID-RVGSSI----LQ 285
+ + N + KL R+ + ++ ++ + F +D RV SS+ +
Sbjct: 141 -VKKYNDDILYKL------SRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEII 193
Query: 286 VPTLNREIINSIVE-------ECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL 338
P N E + I+ + G LP ++ + A+++ E + + AL+ LR
Sbjct: 194 FPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH-GDARRALDLLR------ 246
Query: 339 NDVDTKVFGRLEFSYHRLKDEKLRQCFLYCA 369
V G + R+KD K+++ ++Y A
Sbjct: 247 ------VSGEIA---ERMKDTKVKEEYVYMA 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,350,501
Number of Sequences: 62578
Number of extensions: 942571
Number of successful extensions: 2985
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2861
Number of HSP's gapped (non-prelim): 143
length of query: 837
length of database: 14,973,337
effective HSP length: 107
effective length of query: 730
effective length of database: 8,277,491
effective search space: 6042568430
effective search space used: 6042568430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)