Query 038611
Match_columns 837
No_of_seqs 504 out of 5312
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.5E-88 1.8E-92 780.9 46.3 582 2-595 24-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.2E-61 2E-65 587.6 52.4 503 107-652 183-743 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.1E-43 6.8E-48 371.8 16.8 276 116-394 2-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 4.2E-20 9.2E-25 228.5 17.6 176 465-646 92-272 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.7E-20 8.1E-25 229.0 16.9 332 464-836 116-457 (968)
6 KOG0444 Cytoskeletal regulator 99.8 3.2E-22 6.9E-27 210.4 -4.5 326 447-823 36-380 (1255)
7 KOG4194 Membrane glycoprotein 99.8 8.8E-21 1.9E-25 198.7 0.9 190 455-648 114-307 (873)
8 PLN03210 Resistant to P. syrin 99.8 3.2E-18 6.9E-23 211.8 20.8 308 465-822 588-910 (1153)
9 KOG4194 Membrane glycoprotein 99.7 1.6E-18 3.5E-23 181.9 1.8 278 466-781 149-431 (873)
10 KOG0444 Cytoskeletal regulator 99.7 1.6E-18 3.4E-23 182.9 -0.8 192 456-654 93-288 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 2.1E-17 4.5E-22 166.4 -4.8 154 455-615 149-304 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1E-17 2.2E-22 168.6 -8.3 177 466-650 45-222 (565)
13 KOG0617 Ras suppressor protein 99.5 3.3E-16 7.1E-21 139.7 -2.5 159 488-653 31-192 (264)
14 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 4E-18 157.2 15.2 166 454-649 212-377 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 8.7E-14 1.9E-18 161.1 10.3 121 468-602 180-301 (754)
16 KOG0618 Serine/threonine phosp 99.5 2.3E-15 4.9E-20 167.2 -2.6 137 455-594 10-147 (1081)
17 PRK04841 transcriptional regul 99.5 4.1E-12 8.8E-17 156.7 25.2 292 106-442 12-333 (903)
18 KOG0617 Ras suppressor protein 99.5 2.2E-15 4.9E-20 134.4 -2.7 136 463-602 53-191 (264)
19 KOG0618 Serine/threonine phosp 99.5 1.2E-15 2.6E-20 169.3 -5.6 93 453-548 55-147 (1081)
20 PRK15370 E3 ubiquitin-protein 99.4 6.7E-13 1.4E-17 153.8 13.1 172 453-648 188-360 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 8.1E-13 1.8E-17 152.0 12.5 255 468-817 203-457 (788)
22 KOG4658 Apoptotic ATPase [Sign 99.4 2.2E-13 4.7E-18 160.2 4.1 177 467-647 546-730 (889)
23 COG2909 MalT ATP-dependent tra 99.3 1.8E-10 3.8E-15 128.7 19.5 287 120-444 25-341 (894)
24 KOG4237 Extracellular matrix p 99.2 6.8E-13 1.5E-17 134.2 -1.5 121 494-615 71-195 (498)
25 TIGR03015 pepcterm_ATPase puta 99.2 3.7E-09 8E-14 110.4 24.3 182 128-315 40-242 (269)
26 KOG4237 Extracellular matrix p 99.2 9.9E-12 2.1E-16 125.9 2.8 197 448-649 51-337 (498)
27 PRK00411 cdc6 cell division co 99.2 1.6E-08 3.5E-13 111.9 28.2 294 106-421 28-358 (394)
28 TIGR02928 orc1/cdc6 family rep 99.1 8E-08 1.7E-12 105.2 28.8 295 107-421 14-350 (365)
29 cd00116 LRR_RI Leucine-rich re 99.1 1.8E-10 3.8E-15 124.0 7.2 155 487-646 20-205 (319)
30 PF01637 Arch_ATPase: Archaeal 99.1 4.2E-10 9.1E-15 115.0 9.7 193 110-310 1-233 (234)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.2E-10 2.6E-15 125.2 5.6 134 511-647 19-178 (319)
32 PF05729 NACHT: NACHT domain 99.1 1.3E-09 2.9E-14 104.7 11.9 143 132-280 1-164 (166)
33 TIGR00635 ruvB Holliday juncti 99.0 1.7E-08 3.6E-13 107.5 19.9 273 109-424 5-292 (305)
34 PRK00080 ruvB Holliday junctio 99.0 9.2E-08 2E-12 102.4 24.5 275 108-424 25-313 (328)
35 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.3E-15 123.8 -2.0 182 454-644 86-270 (722)
36 COG3899 Predicted ATPase [Gene 98.9 3.6E-08 7.7E-13 117.1 17.6 310 109-443 1-388 (849)
37 KOG0532 Leucine-rich repeat (L 98.9 6.4E-11 1.4E-15 125.5 -4.9 199 452-660 59-260 (722)
38 COG2256 MGS1 ATPase related to 98.9 1.8E-08 4E-13 103.6 11.8 176 109-312 25-213 (436)
39 PF14580 LRR_9: Leucine-rich r 98.8 4E-09 8.6E-14 99.8 5.6 127 513-642 17-148 (175)
40 PRK06893 DNA replication initi 98.8 3.5E-08 7.7E-13 99.5 12.6 173 109-313 17-205 (229)
41 KOG1259 Nischarin, modulator o 98.8 6.4E-10 1.4E-14 108.7 -0.4 131 466-601 284-416 (490)
42 PF14580 LRR_9: Leucine-rich r 98.7 1.7E-08 3.6E-13 95.5 5.8 100 514-615 41-147 (175)
43 TIGR03420 DnaA_homol_Hda DnaA 98.6 3E-07 6.5E-12 93.2 12.5 173 109-313 16-203 (226)
44 PRK13342 recombination factor 98.6 5E-07 1.1E-11 99.8 15.0 176 109-314 13-199 (413)
45 PTZ00112 origin recognition co 98.6 7.9E-06 1.7E-10 93.0 24.1 204 108-315 755-986 (1164)
46 KOG1259 Nischarin, modulator o 98.6 6.1E-09 1.3E-13 102.0 -1.4 132 513-648 282-413 (490)
47 PRK07003 DNA polymerase III su 98.6 2.4E-06 5.3E-11 96.6 18.7 178 108-312 16-222 (830)
48 KOG2028 ATPase related to the 98.5 2.5E-06 5.3E-11 86.4 15.5 163 121-307 152-332 (554)
49 COG4886 Leucine-rich repeat (L 98.5 6.5E-08 1.4E-12 107.2 4.4 172 467-647 117-290 (394)
50 PRK05564 DNA polymerase III su 98.5 2.9E-06 6.2E-11 90.3 16.7 176 109-311 5-190 (313)
51 PF13401 AAA_22: AAA domain; P 98.5 3.9E-07 8.5E-12 83.5 8.5 117 131-249 4-125 (131)
52 PRK04195 replication factor C 98.5 6.8E-06 1.5E-10 92.7 19.8 241 108-394 14-271 (482)
53 PRK12402 replication factor C 98.5 2.2E-06 4.7E-11 92.9 15.0 197 108-311 15-226 (337)
54 KOG3207 Beta-tubulin folding c 98.5 2.8E-08 6.1E-13 102.7 0.2 36 559-594 195-232 (505)
55 PF13173 AAA_14: AAA domain 98.5 3.7E-07 8E-12 83.0 7.4 119 131-271 2-127 (128)
56 PRK14949 DNA polymerase III su 98.5 2.3E-06 5.1E-11 98.7 15.3 181 108-311 16-220 (944)
57 PRK14961 DNA polymerase III su 98.5 4.1E-06 8.9E-11 90.8 16.4 191 108-311 16-220 (363)
58 PRK14956 DNA polymerase III su 98.5 2E-06 4.3E-11 93.6 13.6 194 108-311 18-222 (484)
59 PRK12323 DNA polymerase III su 98.4 2.5E-06 5.4E-11 95.2 14.5 193 108-311 16-225 (700)
60 PLN03025 replication factor C 98.4 4.5E-06 9.7E-11 89.0 16.2 179 109-309 14-198 (319)
61 PRK08084 DNA replication initi 98.4 2E-06 4.3E-11 87.1 12.8 172 109-313 24-211 (235)
62 cd01128 rho_factor Transcripti 98.4 5.1E-07 1.1E-11 91.1 7.7 94 129-224 14-115 (249)
63 PRK14960 DNA polymerase III su 98.4 4.4E-06 9.6E-11 93.5 15.5 190 108-311 15-219 (702)
64 COG4886 Leucine-rich repeat (L 98.4 3E-07 6.4E-12 101.9 6.2 161 452-617 125-286 (394)
65 cd00009 AAA The AAA+ (ATPases 98.4 1.8E-06 3.8E-11 80.9 10.6 120 116-251 4-131 (151)
66 TIGR02903 spore_lon_C ATP-depe 98.4 2.2E-05 4.7E-10 90.6 21.5 198 108-312 154-396 (615)
67 PRK06645 DNA polymerase III su 98.4 8E-06 1.7E-10 90.9 16.8 191 109-310 22-228 (507)
68 KOG2120 SCF ubiquitin ligase, 98.4 3.7E-08 8.1E-13 96.7 -1.9 185 562-815 186-373 (419)
69 KOG3207 Beta-tubulin folding c 98.4 1.1E-07 2.5E-12 98.4 1.2 37 560-596 245-283 (505)
70 PRK14963 DNA polymerase III su 98.4 1.3E-05 2.8E-10 89.7 17.6 192 108-309 14-215 (504)
71 PRK00440 rfc replication facto 98.4 1E-05 2.2E-10 86.8 16.5 180 108-311 17-203 (319)
72 PRK08727 hypothetical protein; 98.4 5.9E-06 1.3E-10 83.6 13.6 168 109-309 20-202 (233)
73 PRK14957 DNA polymerase III su 98.3 1.2E-05 2.7E-10 90.0 16.4 181 108-311 16-221 (546)
74 PRK07471 DNA polymerase III su 98.3 2E-05 4.2E-10 84.7 17.2 196 108-312 19-239 (365)
75 COG1474 CDC6 Cdc6-related prot 98.3 9.2E-05 2E-09 79.4 22.2 198 109-312 18-239 (366)
76 PRK14962 DNA polymerase III su 98.3 1.3E-05 2.9E-10 88.9 16.2 184 108-314 14-222 (472)
77 PRK09087 hypothetical protein; 98.3 5.6E-06 1.2E-10 82.9 11.6 142 130-312 43-196 (226)
78 PRK13341 recombination factor 98.3 9.4E-06 2E-10 94.4 14.4 171 109-309 29-215 (725)
79 COG3903 Predicted ATPase [Gene 98.3 1.4E-06 3.1E-11 90.7 6.8 291 130-443 13-316 (414)
80 PRK07994 DNA polymerase III su 98.3 9.7E-06 2.1E-10 92.2 14.1 192 108-312 16-221 (647)
81 PRK09376 rho transcription ter 98.3 3.9E-06 8.6E-11 88.1 9.8 93 130-224 168-268 (416)
82 PF05496 RuvB_N: Holliday junc 98.2 4.1E-05 9E-10 74.2 15.9 174 108-316 24-226 (233)
83 PRK14964 DNA polymerase III su 98.2 3E-05 6.5E-10 85.7 17.0 179 108-309 13-215 (491)
84 PF00308 Bac_DnaA: Bacterial d 98.2 1.4E-05 3E-10 79.9 13.1 160 131-311 34-208 (219)
85 PRK07940 DNA polymerase III su 98.2 2.3E-05 5E-10 84.9 15.6 184 109-311 6-213 (394)
86 PF13191 AAA_16: AAA ATPase do 98.2 1.5E-06 3.3E-11 85.0 6.0 47 109-157 1-50 (185)
87 KOG4341 F-box protein containi 98.2 1.3E-07 2.8E-12 97.4 -1.7 305 468-814 140-461 (483)
88 PF13855 LRR_8: Leucine rich r 98.2 7.9E-07 1.7E-11 68.9 3.1 57 491-548 2-59 (61)
89 PRK14951 DNA polymerase III su 98.2 2.5E-05 5.4E-10 88.8 16.2 195 108-311 16-225 (618)
90 PRK14958 DNA polymerase III su 98.2 1.8E-05 3.8E-10 88.9 14.9 181 108-311 16-220 (509)
91 PRK05896 DNA polymerase III su 98.2 2.1E-05 4.5E-10 88.2 15.2 188 108-308 16-217 (605)
92 PRK08691 DNA polymerase III su 98.2 1.6E-05 3.5E-10 90.0 14.4 178 108-312 16-221 (709)
93 PRK09112 DNA polymerase III su 98.2 2.5E-05 5.3E-10 83.4 14.8 195 108-312 23-241 (351)
94 PRK08903 DnaA regulatory inact 98.2 1.8E-05 4E-10 80.1 13.2 171 109-315 19-203 (227)
95 TIGR02397 dnaX_nterm DNA polym 98.2 4.7E-05 1E-09 83.0 17.4 181 108-312 14-219 (355)
96 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.2E-11 67.3 3.7 60 467-527 2-61 (61)
97 PRK14087 dnaA chromosomal repl 98.2 3.2E-05 6.8E-10 85.8 14.8 187 110-313 118-321 (450)
98 TIGR00678 holB DNA polymerase 98.1 5.9E-05 1.3E-09 73.8 14.9 159 121-307 3-187 (188)
99 PRK14955 DNA polymerase III su 98.1 2.6E-05 5.6E-10 85.6 13.6 197 108-310 16-227 (397)
100 PLN03150 hypothetical protein; 98.1 4.9E-06 1.1E-10 96.7 8.4 102 492-594 420-525 (623)
101 PLN03150 hypothetical protein; 98.1 4.5E-06 9.7E-11 97.1 7.5 86 517-602 420-509 (623)
102 PRK14969 DNA polymerase III su 98.1 5E-05 1.1E-09 85.9 15.2 175 108-309 16-218 (527)
103 PRK05642 DNA replication initi 98.1 5.2E-05 1.1E-09 76.7 13.8 151 131-313 45-210 (234)
104 PRK14970 DNA polymerase III su 98.1 6.1E-05 1.3E-09 82.3 15.5 178 108-308 17-206 (367)
105 TIGR00767 rho transcription te 98.1 1.1E-05 2.4E-10 85.3 8.7 93 130-224 167-267 (415)
106 PRK07133 DNA polymerase III su 98.1 8.6E-05 1.9E-09 85.2 16.0 186 108-311 18-219 (725)
107 PTZ00202 tuzin; Provisional 98.0 8.3E-05 1.8E-09 78.7 14.2 162 103-278 257-433 (550)
108 PF05621 TniB: Bacterial TniB 98.0 6.6E-05 1.4E-09 76.3 12.9 200 109-311 35-261 (302)
109 PRK14959 DNA polymerase III su 98.0 7.7E-05 1.7E-09 84.2 14.8 195 108-315 16-225 (624)
110 PRK07764 DNA polymerase III su 98.0 0.0001 2.2E-09 87.0 16.4 174 108-309 15-219 (824)
111 PRK08451 DNA polymerase III su 98.0 0.00019 4.2E-09 80.1 17.6 182 108-312 14-219 (535)
112 PRK14971 DNA polymerase III su 98.0 0.00014 3E-09 83.7 16.3 179 108-310 17-221 (614)
113 TIGR00362 DnaA chromosomal rep 98.0 0.00015 3.2E-09 80.3 16.0 179 110-309 113-308 (405)
114 PRK06620 hypothetical protein; 98.0 6.1E-05 1.3E-09 74.8 11.2 158 109-310 18-188 (214)
115 TIGR01242 26Sp45 26S proteasom 98.0 6.5E-05 1.4E-09 81.8 12.3 169 109-305 123-328 (364)
116 KOG1859 Leucine-rich repeat pr 97.9 1.1E-06 2.3E-11 96.5 -1.6 128 515-647 164-292 (1096)
117 PRK14954 DNA polymerase III su 97.9 9.7E-05 2.1E-09 84.4 13.8 195 108-308 16-225 (620)
118 PRK14952 DNA polymerase III su 97.9 0.00027 5.9E-09 80.2 17.3 192 108-313 13-222 (584)
119 PF14516 AAA_35: AAA-like doma 97.9 0.00094 2E-08 71.4 20.6 200 106-318 9-246 (331)
120 PRK09111 DNA polymerase III su 97.9 6.6E-05 1.4E-09 85.6 12.3 195 109-312 25-234 (598)
121 PRK06305 DNA polymerase III su 97.9 0.00023 5E-09 79.0 16.1 177 108-308 17-219 (451)
122 PRK14088 dnaA chromosomal repl 97.9 0.0002 4.3E-09 79.5 15.5 180 110-309 108-303 (440)
123 KOG1909 Ran GTPase-activating 97.9 1.9E-06 4.2E-11 87.1 -0.3 91 703-816 211-309 (382)
124 PRK14953 DNA polymerase III su 97.9 0.00036 7.9E-09 78.0 17.4 178 108-312 16-221 (486)
125 COG2255 RuvB Holliday junction 97.9 0.0013 2.8E-08 65.4 18.6 172 109-315 27-227 (332)
126 TIGR02881 spore_V_K stage V sp 97.9 7.5E-05 1.6E-09 77.2 10.6 132 131-281 42-193 (261)
127 KOG2227 Pre-initiation complex 97.9 0.00084 1.8E-08 71.2 18.0 192 106-305 148-362 (529)
128 KOG3665 ZYG-1-like serine/thre 97.9 7.9E-06 1.7E-10 94.6 3.5 129 467-597 123-263 (699)
129 PRK00149 dnaA chromosomal repl 97.9 0.00031 6.7E-09 78.8 15.9 179 110-309 125-320 (450)
130 PRK14950 DNA polymerase III su 97.8 0.00013 2.8E-09 84.1 12.8 193 108-312 16-222 (585)
131 PRK06647 DNA polymerase III su 97.8 0.00053 1.1E-08 78.0 17.1 191 108-311 16-220 (563)
132 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.2E-10 56.4 2.9 40 561-600 1-40 (44)
133 PRK15386 type III secretion pr 97.8 7.3E-05 1.6E-09 79.7 9.0 61 466-533 52-113 (426)
134 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00028 6E-09 84.5 15.0 178 109-304 188-389 (852)
135 TIGR02639 ClpA ATP-dependent C 97.8 0.00015 3.3E-09 86.1 12.5 154 109-279 183-358 (731)
136 PRK14948 DNA polymerase III su 97.8 0.00069 1.5E-08 78.0 17.0 195 108-313 16-224 (620)
137 KOG2982 Uncharacterized conser 97.8 3.9E-05 8.5E-10 75.9 5.8 86 512-597 68-159 (418)
138 KOG4341 F-box protein containi 97.8 1.7E-06 3.7E-11 89.4 -3.9 239 515-821 138-388 (483)
139 PHA02544 44 clamp loader, smal 97.7 0.00047 1E-08 73.8 14.5 143 108-276 21-170 (316)
140 KOG0989 Replication factor C, 97.7 0.00029 6.2E-09 70.6 11.2 182 109-308 37-227 (346)
141 PRK14086 dnaA chromosomal repl 97.7 0.0025 5.5E-08 71.9 20.1 156 132-308 315-485 (617)
142 PRK14965 DNA polymerase III su 97.7 0.00034 7.3E-09 80.3 13.6 191 108-311 16-221 (576)
143 KOG0531 Protein phosphatase 1, 97.7 3.4E-06 7.3E-11 93.7 -2.8 128 467-599 73-201 (414)
144 PRK11331 5-methylcytosine-spec 97.7 0.00023 5E-09 76.9 11.1 108 109-224 176-284 (459)
145 PRK05563 DNA polymerase III su 97.7 0.0012 2.6E-08 75.5 17.0 190 108-310 16-219 (559)
146 PRK11034 clpA ATP-dependent Cl 97.7 0.00029 6.3E-09 82.6 12.2 155 109-279 187-362 (758)
147 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 78.6 7.6 82 488-581 50-135 (426)
148 PRK12422 chromosomal replicati 97.7 0.0012 2.6E-08 73.1 16.1 152 131-305 141-307 (445)
149 TIGR02880 cbbX_cfxQ probable R 97.6 0.00084 1.8E-08 70.0 14.1 131 133-281 60-210 (284)
150 CHL00181 cbbX CbbX; Provisiona 97.6 0.0016 3.4E-08 67.9 15.8 131 132-281 60-211 (287)
151 PRK03992 proteasome-activating 97.6 0.00045 9.7E-09 75.6 12.3 169 109-305 132-337 (389)
152 PF12799 LRR_4: Leucine Rich r 97.6 5.5E-05 1.2E-09 53.5 3.3 33 516-548 2-34 (44)
153 PRK07399 DNA polymerase III su 97.6 0.0034 7.3E-08 66.3 17.9 196 109-312 5-222 (314)
154 KOG2543 Origin recognition com 97.6 0.00051 1.1E-08 70.9 11.1 162 108-278 6-192 (438)
155 KOG2120 SCF ubiquitin ligase, 97.6 4E-06 8.6E-11 82.8 -4.1 175 468-644 187-373 (419)
156 CHL00095 clpC Clp protease ATP 97.6 0.00039 8.4E-09 83.7 11.8 154 109-278 180-353 (821)
157 KOG0531 Protein phosphatase 1, 97.5 1.3E-05 2.8E-10 89.1 -1.2 125 488-617 70-195 (414)
158 PRK05707 DNA polymerase III su 97.5 0.0022 4.7E-08 68.1 15.4 166 131-311 22-203 (328)
159 PRK10865 protein disaggregatio 97.5 0.00084 1.8E-08 80.7 13.5 154 109-279 179-354 (857)
160 smart00382 AAA ATPases associa 97.5 0.00036 7.7E-09 64.5 8.4 91 131-226 2-92 (148)
161 TIGR00602 rad24 checkpoint pro 97.5 0.00067 1.5E-08 77.5 11.6 200 109-315 85-327 (637)
162 COG1373 Predicted ATPase (AAA+ 97.5 0.0012 2.6E-08 72.2 13.1 133 117-275 24-163 (398)
163 PRK08118 topology modulation p 97.5 6.2E-05 1.3E-09 71.7 2.5 36 132-167 2-37 (167)
164 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0017 3.7E-08 78.5 15.2 154 109-279 174-349 (852)
165 KOG1859 Leucine-rich repeat pr 97.4 1.4E-05 3E-10 88.1 -2.6 106 539-651 165-271 (1096)
166 KOG1644 U2-associated snRNP A' 97.4 0.00032 6.9E-09 66.0 6.5 104 464-571 40-150 (233)
167 PF00004 AAA: ATPase family as 97.4 0.0004 8.6E-09 63.4 6.8 69 134-224 1-70 (132)
168 COG3267 ExeA Type II secretory 97.4 0.0059 1.3E-07 60.1 14.6 182 127-313 47-247 (269)
169 PTZ00454 26S protease regulato 97.3 0.0037 8.1E-08 68.1 14.5 152 130-307 178-353 (398)
170 KOG4579 Leucine-rich repeat (L 97.3 3.9E-05 8.5E-10 67.2 -0.6 55 492-547 55-109 (177)
171 PTZ00361 26 proteosome regulat 97.3 0.0014 3.1E-08 71.8 10.8 151 130-306 216-390 (438)
172 PRK08769 DNA polymerase III su 97.3 0.0083 1.8E-07 63.1 15.9 185 116-312 10-209 (319)
173 PF04665 Pox_A32: Poxvirus A32 97.3 0.00076 1.6E-08 67.1 7.6 38 132-172 14-51 (241)
174 KOG3665 ZYG-1-like serine/thre 97.2 0.00026 5.7E-09 82.2 4.3 105 490-595 122-231 (699)
175 PRK08116 hypothetical protein; 97.2 0.00064 1.4E-08 70.1 6.6 101 132-249 115-220 (268)
176 COG0593 DnaA ATPase involved i 97.2 0.0063 1.4E-07 65.3 13.7 154 110-282 90-260 (408)
177 PF05673 DUF815: Protein of un 97.2 0.0038 8.3E-08 61.7 11.1 49 105-155 24-76 (249)
178 KOG4579 Leucine-rich repeat (L 97.2 7E-05 1.5E-09 65.6 -0.9 86 467-555 54-139 (177)
179 PRK08058 DNA polymerase III su 97.1 0.0084 1.8E-07 64.1 14.7 159 109-277 6-180 (329)
180 PRK06871 DNA polymerase III su 97.1 0.016 3.4E-07 61.1 16.3 177 117-309 9-201 (325)
181 CHL00176 ftsH cell division pr 97.1 0.0025 5.3E-08 73.6 11.2 170 109-304 184-387 (638)
182 TIGR01241 FtsH_fam ATP-depende 97.1 0.013 2.7E-07 66.8 16.8 171 109-305 56-260 (495)
183 TIGR03689 pup_AAA proteasome A 97.1 0.0039 8.5E-08 69.5 12.3 137 131-281 216-380 (512)
184 PRK12608 transcription termina 97.1 0.0046 9.9E-08 65.5 11.9 103 119-223 120-231 (380)
185 COG2812 DnaX DNA polymerase II 97.1 0.0024 5.3E-08 70.5 10.2 186 108-306 16-215 (515)
186 PF13177 DNA_pol3_delta2: DNA 97.0 0.0063 1.4E-07 57.6 11.0 134 116-267 3-162 (162)
187 KOG1909 Ran GTPase-activating 97.0 0.0004 8.7E-09 70.7 2.9 12 705-716 298-309 (382)
188 KOG0991 Replication factor C, 97.0 0.0025 5.3E-08 61.2 7.7 98 109-224 28-125 (333)
189 KOG0741 AAA+-type ATPase [Post 97.0 0.013 2.9E-07 63.1 13.9 146 131-301 538-704 (744)
190 PF00448 SRP54: SRP54-type pro 96.9 0.0053 1.1E-07 60.0 9.9 89 131-222 1-93 (196)
191 COG0542 clpA ATP-binding subun 96.9 0.0099 2.1E-07 68.7 13.4 104 109-224 492-605 (786)
192 PHA00729 NTP-binding motif con 96.9 0.0049 1.1E-07 60.7 9.5 35 121-155 7-41 (226)
193 TIGR02237 recomb_radB DNA repa 96.9 0.0043 9.3E-08 61.8 9.2 46 131-180 12-57 (209)
194 PRK09183 transposase/IS protei 96.9 0.012 2.6E-07 60.4 12.6 25 131-155 102-126 (259)
195 PRK04132 replication factor C 96.9 0.017 3.7E-07 68.1 15.2 155 139-313 574-733 (846)
196 PRK06090 DNA polymerase III su 96.9 0.033 7.2E-07 58.5 15.9 175 117-311 10-201 (319)
197 PRK10536 hypothetical protein; 96.9 0.0064 1.4E-07 60.9 9.9 43 109-155 56-98 (262)
198 PRK07993 DNA polymerase III su 96.9 0.0098 2.1E-07 63.3 11.9 179 117-311 9-204 (334)
199 PRK07261 topology modulation p 96.9 0.0018 4E-08 61.9 5.9 35 133-167 2-36 (171)
200 PF10443 RNA12: RNA12 protein; 96.9 0.088 1.9E-06 56.5 18.8 195 116-321 2-288 (431)
201 PRK08181 transposase; Validate 96.8 0.0017 3.7E-08 66.5 5.7 105 124-250 101-209 (269)
202 PRK06921 hypothetical protein; 96.8 0.003 6.6E-08 65.0 7.2 39 130-170 116-154 (266)
203 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.5E-08 59.3 3.7 23 133-155 1-23 (121)
204 KOG1644 U2-associated snRNP A' 96.7 0.0023 4.9E-08 60.4 5.3 97 517-615 44-147 (233)
205 KOG2739 Leucine-rich acidic nu 96.7 0.00048 1E-08 67.7 0.8 61 513-574 41-104 (260)
206 TIGR02639 ClpA ATP-dependent C 96.7 0.01 2.2E-07 70.8 12.0 102 109-224 455-565 (731)
207 KOG2228 Origin recognition com 96.7 0.044 9.5E-07 56.1 14.3 167 108-279 24-219 (408)
208 PRK06526 transposase; Provisio 96.7 0.0013 2.8E-08 67.1 3.6 26 130-155 97-122 (254)
209 PF13306 LRR_5: Leucine rich r 96.7 0.0038 8.1E-08 56.7 6.4 122 481-610 3-128 (129)
210 KOG0743 AAA+-type ATPase [Post 96.7 0.34 7.4E-06 52.1 21.5 167 116-318 211-417 (457)
211 KOG1969 DNA replication checkp 96.7 0.0049 1.1E-07 69.0 8.0 74 131-224 326-399 (877)
212 TIGR02640 gas_vesic_GvpN gas v 96.6 0.026 5.7E-07 58.2 12.8 55 117-179 9-63 (262)
213 cd01120 RecA-like_NTPases RecA 96.6 0.013 2.7E-07 55.7 9.8 40 133-175 1-40 (165)
214 CHL00095 clpC Clp protease ATP 96.6 0.023 4.9E-07 68.7 14.0 60 108-172 509-577 (821)
215 KOG0733 Nuclear AAA ATPase (VC 96.6 0.033 7.1E-07 61.3 13.4 72 130-223 222-293 (802)
216 PRK09361 radB DNA repair and r 96.6 0.014 3.1E-07 58.8 10.4 45 131-179 23-67 (225)
217 cd01393 recA_like RecA is a b 96.6 0.021 4.6E-07 57.6 11.6 50 131-180 19-71 (226)
218 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.018 3.9E-07 58.6 11.1 92 131-223 19-126 (235)
219 PRK12377 putative replication 96.5 0.0043 9.4E-08 62.8 6.1 75 130-223 100-174 (248)
220 COG0466 Lon ATP-dependent Lon 96.5 0.011 2.4E-07 66.4 9.4 60 111-178 326-391 (782)
221 PRK10865 protein disaggregatio 96.5 0.019 4.1E-07 69.3 12.3 45 109-155 569-622 (857)
222 PRK06964 DNA polymerase III su 96.5 0.023 4.9E-07 60.4 11.4 91 211-312 131-226 (342)
223 TIGR02238 recomb_DMC1 meiotic 96.5 0.019 4.2E-07 60.4 10.6 91 131-222 96-201 (313)
224 CHL00195 ycf46 Ycf46; Provisio 96.5 0.026 5.5E-07 63.1 12.1 154 130-307 258-431 (489)
225 COG1222 RPT1 ATP-dependent 26S 96.5 0.041 8.9E-07 56.9 12.4 174 116-315 157-371 (406)
226 KOG0734 AAA+-type ATPase conta 96.4 0.0091 2E-07 64.4 7.8 93 109-223 305-407 (752)
227 TIGR00763 lon ATP-dependent pr 96.4 0.032 6.9E-07 67.0 13.4 45 109-155 321-371 (775)
228 KOG0731 AAA+-type ATPase conta 96.4 0.028 6.1E-07 64.5 12.0 176 109-310 312-523 (774)
229 cd00544 CobU Adenosylcobinamid 96.4 0.0035 7.5E-08 59.6 4.1 81 133-221 1-82 (169)
230 KOG0735 AAA+-type ATPase [Post 96.4 0.019 4E-07 64.3 10.0 158 131-311 431-616 (952)
231 TIGR03345 VI_ClpV1 type VI sec 96.3 0.0066 1.4E-07 72.9 7.1 45 109-155 567-620 (852)
232 TIGR02012 tigrfam_recA protein 96.3 0.014 3E-07 61.2 8.5 86 130-223 54-144 (321)
233 TIGR02902 spore_lonB ATP-depen 96.3 0.031 6.8E-07 63.7 12.1 45 109-155 66-110 (531)
234 KOG0730 AAA+-type ATPase [Post 96.3 0.099 2.1E-06 58.5 15.2 131 130-282 467-618 (693)
235 PRK05541 adenylylsulfate kinas 96.3 0.01 2.2E-07 57.3 7.0 36 130-168 6-41 (176)
236 PRK04296 thymidine kinase; Pro 96.3 0.0041 9E-08 60.7 4.3 111 132-251 3-117 (190)
237 PRK07952 DNA replication prote 96.3 0.028 6E-07 56.8 10.1 89 118-224 84-174 (244)
238 TIGR03346 chaperone_ClpB ATP-d 96.3 0.011 2.4E-07 71.5 8.6 59 109-172 566-633 (852)
239 cd01133 F1-ATPase_beta F1 ATP 96.3 0.034 7.3E-07 56.7 10.7 93 130-224 68-175 (274)
240 TIGR01243 CDC48 AAA family ATP 96.3 0.035 7.6E-07 66.4 12.7 151 131-307 212-383 (733)
241 COG3854 SpoIIIAA ncharacterize 96.2 0.0075 1.6E-07 58.0 5.4 120 122-251 128-254 (308)
242 COG1484 DnaC DNA replication p 96.2 0.026 5.6E-07 57.6 9.9 81 122-223 98-178 (254)
243 TIGR01425 SRP54_euk signal rec 96.2 0.18 3.9E-06 55.1 16.4 38 130-170 99-136 (429)
244 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0084 1.8E-07 63.3 6.0 57 109-167 52-118 (361)
245 cd01394 radB RadB. The archaea 96.2 0.034 7.3E-07 55.8 10.3 43 130-175 18-60 (218)
246 KOG2982 Uncharacterized conser 96.2 0.0013 2.8E-08 65.5 -0.0 157 488-647 69-262 (418)
247 cd00983 recA RecA is a bacter 96.2 0.019 4E-07 60.3 8.4 84 131-222 55-143 (325)
248 COG0542 clpA ATP-binding subun 96.1 0.013 2.9E-07 67.7 7.9 154 109-278 171-345 (786)
249 PRK09354 recA recombinase A; P 96.1 0.021 4.6E-07 60.3 8.7 85 131-223 60-149 (349)
250 PRK06835 DNA replication prote 96.1 0.012 2.5E-07 62.4 6.8 36 132-170 184-219 (329)
251 PRK08939 primosomal protein Dn 96.1 0.032 7E-07 58.6 10.1 100 130-249 155-260 (306)
252 KOG1514 Origin recognition com 96.1 0.19 4E-06 56.7 16.1 198 109-314 397-624 (767)
253 COG1223 Predicted ATPase (AAA+ 96.1 0.048 1E-06 53.6 10.2 171 109-305 122-319 (368)
254 PF07693 KAP_NTPase: KAP famil 96.1 0.062 1.3E-06 57.7 12.6 39 118-156 4-45 (325)
255 TIGR01243 CDC48 AAA family ATP 96.1 0.058 1.3E-06 64.6 13.4 149 131-305 487-657 (733)
256 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.057 1.2E-06 54.9 11.5 48 130-182 20-67 (237)
257 PF01583 APS_kinase: Adenylyls 96.1 0.0046 1E-07 57.3 3.1 36 131-169 2-37 (156)
258 PRK06696 uridine kinase; Valid 96.1 0.0092 2E-07 60.0 5.6 40 116-155 4-46 (223)
259 PF01695 IstB_IS21: IstB-like 96.1 0.015 3.2E-07 56.0 6.7 75 130-224 46-120 (178)
260 PF08423 Rad51: Rad51; InterP 96.0 0.067 1.5E-06 54.8 11.8 91 131-222 38-143 (256)
261 COG1618 Predicted nucleotide k 96.0 0.0086 1.9E-07 54.5 4.5 24 132-155 6-29 (179)
262 COG2607 Predicted ATPase (AAA+ 96.0 0.042 9E-07 53.6 9.4 49 107-155 59-109 (287)
263 cd03115 SRP The signal recogni 96.0 0.037 8.1E-07 53.2 9.2 23 133-155 2-24 (173)
264 TIGR03499 FlhF flagellar biosy 96.0 0.042 9.2E-07 57.2 10.2 88 130-221 193-281 (282)
265 COG0470 HolB ATPase involved i 96.0 0.035 7.6E-07 59.6 10.1 133 116-265 7-167 (325)
266 PLN00020 ribulose bisphosphate 96.0 0.018 4E-07 60.4 7.3 26 130-155 147-172 (413)
267 PRK08699 DNA polymerase III su 96.0 0.095 2.1E-06 55.6 12.8 26 130-155 20-45 (325)
268 PRK11889 flhF flagellar biosyn 96.0 0.039 8.5E-07 58.8 9.7 89 130-223 240-331 (436)
269 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 56.6 5.0 35 121-155 5-39 (172)
270 KOG2004 Mitochondrial ATP-depe 96.0 0.023 4.9E-07 63.7 8.2 62 110-179 413-480 (906)
271 PRK14722 flhF flagellar biosyn 95.9 0.034 7.4E-07 59.6 9.4 89 131-223 137-226 (374)
272 cd01125 repA Hexameric Replica 95.9 0.038 8.3E-07 56.3 9.5 142 133-274 3-199 (239)
273 TIGR02858 spore_III_AA stage I 95.9 0.012 2.7E-07 60.3 5.7 115 128-253 108-232 (270)
274 COG2884 FtsE Predicted ATPase 95.9 0.023 5E-07 53.3 6.8 58 202-260 146-207 (223)
275 TIGR02239 recomb_RAD51 DNA rep 95.9 0.05 1.1E-06 57.6 10.3 59 130-189 95-156 (316)
276 KOG2035 Replication factor C, 95.9 0.2 4.3E-06 50.1 13.4 209 110-336 15-263 (351)
277 PLN03187 meiotic recombination 95.9 0.07 1.5E-06 56.7 11.4 59 131-190 126-187 (344)
278 PLN03186 DNA repair protein RA 95.9 0.052 1.1E-06 57.8 10.4 59 131-190 123-184 (342)
279 PRK06067 flagellar accessory p 95.8 0.062 1.3E-06 54.5 10.4 48 130-182 24-71 (234)
280 PRK00771 signal recognition pa 95.8 0.075 1.6E-06 58.5 11.5 88 130-222 94-185 (437)
281 PTZ00035 Rad51 protein; Provis 95.8 0.086 1.9E-06 56.3 11.6 59 130-189 117-178 (337)
282 PRK10787 DNA-binding ATP-depen 95.8 0.044 9.6E-07 65.2 10.3 45 109-155 323-373 (784)
283 TIGR00064 ftsY signal recognit 95.8 0.07 1.5E-06 55.1 10.5 56 130-189 71-128 (272)
284 KOG2123 Uncharacterized conser 95.8 0.00053 1.2E-08 67.5 -4.7 80 514-595 18-99 (388)
285 cd03214 ABC_Iron-Siderophores_ 95.7 0.044 9.5E-07 53.1 8.5 120 130-255 24-163 (180)
286 PF13238 AAA_18: AAA domain; P 95.7 0.0092 2E-07 54.0 3.5 22 134-155 1-22 (129)
287 cd01131 PilT Pilus retraction 95.7 0.011 2.5E-07 58.0 4.3 109 132-252 2-111 (198)
288 TIGR02236 recomb_radA DNA repa 95.7 0.1 2.2E-06 55.6 11.8 58 130-188 94-154 (310)
289 PRK04301 radA DNA repair and r 95.7 0.11 2.3E-06 55.4 12.0 59 130-189 101-162 (317)
290 KOG2123 Uncharacterized conser 95.7 0.0015 3.3E-08 64.4 -1.9 97 489-590 18-123 (388)
291 PRK14974 cell division protein 95.7 0.11 2.4E-06 55.0 11.8 89 130-223 139-233 (336)
292 cd01121 Sms Sms (bacterial rad 95.7 0.052 1.1E-06 58.7 9.4 87 131-223 82-169 (372)
293 PRK11034 clpA ATP-dependent Cl 95.6 0.026 5.6E-07 66.6 7.6 45 109-155 459-512 (758)
294 PRK08533 flagellar accessory p 95.6 0.064 1.4E-06 54.1 9.4 48 131-183 24-71 (230)
295 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.032 6.9E-07 55.9 7.0 123 131-255 30-204 (254)
296 KOG2739 Leucine-rich acidic nu 95.6 0.01 2.2E-07 58.6 3.4 105 535-643 40-152 (260)
297 COG5238 RNA1 Ran GTPase-activa 95.6 0.0071 1.5E-07 59.6 2.3 89 513-601 28-137 (388)
298 PRK12726 flagellar biosynthesi 95.6 0.072 1.6E-06 56.6 9.7 90 130-223 205-296 (407)
299 PF00485 PRK: Phosphoribulokin 95.5 0.011 2.5E-07 57.9 3.7 23 133-155 1-23 (194)
300 PRK12723 flagellar biosynthesi 95.5 0.067 1.5E-06 57.9 9.8 90 130-223 173-265 (388)
301 KOG1947 Leucine rich repeat pr 95.5 0.0029 6.2E-08 72.2 -0.7 65 743-823 380-445 (482)
302 KOG0736 Peroxisome assembly fa 95.5 0.51 1.1E-05 53.9 16.6 93 107-223 671-775 (953)
303 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.028 6.1E-07 52.0 6.0 105 130-255 25-132 (144)
304 PRK04328 hypothetical protein; 95.5 0.079 1.7E-06 54.2 9.9 42 130-174 22-63 (249)
305 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.6E-07 46.5 3.0 23 133-155 1-23 (69)
306 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.055 1.2E-06 50.4 7.8 116 132-251 3-139 (159)
307 COG1102 Cmk Cytidylate kinase 95.5 0.056 1.2E-06 49.4 7.4 44 133-190 2-45 (179)
308 PRK12724 flagellar biosynthesi 95.5 0.057 1.2E-06 58.3 8.9 84 131-221 223-308 (432)
309 COG4608 AppF ABC-type oligopep 95.5 0.057 1.2E-06 54.2 8.3 125 130-259 38-179 (268)
310 PRK15455 PrkA family serine pr 95.5 0.018 3.9E-07 64.0 5.2 45 109-155 77-127 (644)
311 PF13481 AAA_25: AAA domain; P 95.5 0.093 2E-06 51.4 10.0 43 131-173 32-81 (193)
312 cd03247 ABCC_cytochrome_bd The 95.5 0.031 6.8E-07 54.0 6.4 26 130-155 27-52 (178)
313 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.064 1.4E-06 55.2 9.0 41 130-173 35-75 (259)
314 PRK05480 uridine/cytidine kina 95.4 0.014 3E-07 58.1 3.9 27 129-155 4-30 (209)
315 cd02027 APSK Adenosine 5'-phos 95.4 0.074 1.6E-06 49.5 8.5 23 133-155 1-23 (149)
316 PRK12727 flagellar biosynthesi 95.4 0.072 1.6E-06 59.2 9.4 88 131-222 350-438 (559)
317 COG0563 Adk Adenylate kinase a 95.4 0.031 6.6E-07 53.6 5.9 23 133-155 2-24 (178)
318 PF07728 AAA_5: AAA domain (dy 95.4 0.04 8.8E-07 50.7 6.5 42 134-181 2-43 (139)
319 TIGR02655 circ_KaiC circadian 95.4 0.076 1.6E-06 60.1 9.9 63 120-188 250-314 (484)
320 COG1875 NYN ribonuclease and A 95.3 0.054 1.2E-06 56.1 7.7 36 117-152 231-266 (436)
321 PRK07667 uridine kinase; Provi 95.3 0.024 5.3E-07 55.5 5.1 36 120-155 4-41 (193)
322 PRK00889 adenylylsulfate kinas 95.3 0.056 1.2E-06 52.0 7.5 26 130-155 3-28 (175)
323 cd01124 KaiC KaiC is a circadi 95.3 0.049 1.1E-06 53.1 7.2 38 133-173 1-38 (187)
324 TIGR00390 hslU ATP-dependent p 95.3 0.039 8.4E-07 59.3 6.8 25 131-155 47-71 (441)
325 COG0541 Ffh Signal recognition 95.2 1.5 3.2E-05 47.3 18.1 58 130-191 99-158 (451)
326 cd02025 PanK Pantothenate kina 95.2 0.1 2.2E-06 52.2 9.3 23 133-155 1-23 (220)
327 PF13671 AAA_33: AAA domain; P 95.2 0.017 3.6E-07 53.5 3.5 23 133-155 1-23 (143)
328 PRK08233 hypothetical protein; 95.2 0.016 3.5E-07 56.2 3.5 25 131-155 3-27 (182)
329 PTZ00301 uridine kinase; Provi 95.2 0.025 5.3E-07 55.9 4.8 25 131-155 3-27 (210)
330 cd03223 ABCD_peroxisomal_ALDP 95.2 0.045 9.7E-07 52.1 6.5 117 130-254 26-152 (166)
331 COG1066 Sms Predicted ATP-depe 95.2 0.071 1.5E-06 56.3 8.2 98 120-224 80-180 (456)
332 COG0468 RecA RecA/RadA recombi 95.2 0.13 2.7E-06 52.8 9.9 47 131-180 60-106 (279)
333 PRK10733 hflB ATP-dependent me 95.2 0.11 2.4E-06 60.9 10.7 129 131-281 185-337 (644)
334 PRK06217 hypothetical protein; 95.2 0.031 6.7E-07 54.3 5.3 23 133-155 3-25 (183)
335 PRK06762 hypothetical protein; 95.2 0.018 3.9E-07 55.0 3.6 25 131-155 2-26 (166)
336 cd03238 ABC_UvrA The excision 95.2 0.052 1.1E-06 52.0 6.7 114 130-254 20-153 (176)
337 PRK10867 signal recognition pa 95.1 0.11 2.4E-06 57.0 9.9 26 130-155 99-124 (433)
338 cd03222 ABC_RNaseL_inhibitor T 95.1 0.07 1.5E-06 51.2 7.4 26 130-155 24-49 (177)
339 PRK07132 DNA polymerase III su 95.1 0.64 1.4E-05 48.6 15.0 165 119-310 5-184 (299)
340 PF00910 RNA_helicase: RNA hel 95.1 0.017 3.6E-07 50.4 2.9 23 134-156 1-23 (107)
341 PF12775 AAA_7: P-loop contain 95.1 0.012 2.5E-07 60.9 2.1 89 119-222 22-110 (272)
342 PF06309 Torsin: Torsin; Inte 95.1 0.099 2.1E-06 46.2 7.5 47 109-155 26-77 (127)
343 PF06745 KaiC: KaiC; InterPro 95.1 0.05 1.1E-06 54.9 6.7 43 130-174 18-60 (226)
344 TIGR01360 aden_kin_iso1 adenyl 95.0 0.022 4.7E-07 55.7 3.8 26 130-155 2-27 (188)
345 TIGR00235 udk uridine kinase. 95.0 0.02 4.3E-07 56.9 3.6 26 130-155 5-30 (207)
346 cd03228 ABCC_MRP_Like The MRP 95.0 0.059 1.3E-06 51.6 6.7 26 130-155 27-52 (171)
347 PTZ00088 adenylate kinase 1; P 95.0 0.027 5.9E-07 56.4 4.5 22 134-155 9-30 (229)
348 KOG1947 Leucine rich repeat pr 95.0 0.0044 9.4E-08 70.7 -1.5 41 740-781 402-443 (482)
349 cd03230 ABC_DR_subfamily_A Thi 95.0 0.091 2E-06 50.5 7.9 26 130-155 25-50 (173)
350 PRK03839 putative kinase; Prov 95.0 0.021 4.6E-07 55.3 3.5 23 133-155 2-24 (180)
351 TIGR00959 ffh signal recogniti 94.9 0.15 3.2E-06 56.1 10.2 91 130-222 98-192 (428)
352 PF00006 ATP-synt_ab: ATP synt 94.9 0.096 2.1E-06 51.8 8.0 88 130-222 14-115 (215)
353 COG1419 FlhF Flagellar GTP-bin 94.9 0.27 5.9E-06 52.5 11.7 102 117-222 185-291 (407)
354 PF03205 MobB: Molybdopterin g 94.9 0.049 1.1E-06 50.0 5.5 39 132-172 1-39 (140)
355 COG0529 CysC Adenylylsulfate k 94.9 0.11 2.4E-06 48.3 7.6 30 126-155 18-47 (197)
356 PF13306 LRR_5: Leucine rich r 94.9 0.063 1.4E-06 48.5 6.3 114 466-587 12-129 (129)
357 cd03216 ABC_Carb_Monos_I This 94.9 0.038 8.3E-07 52.4 4.9 117 130-255 25-147 (163)
358 cd03283 ABC_MutS-like MutS-lik 94.9 0.075 1.6E-06 52.2 7.1 24 132-155 26-49 (199)
359 PRK04040 adenylate kinase; Pro 94.8 0.025 5.3E-07 55.0 3.5 25 131-155 2-26 (188)
360 PRK05703 flhF flagellar biosyn 94.8 0.14 3E-06 56.5 9.8 88 131-222 221-309 (424)
361 KOG0733 Nuclear AAA ATPase (VC 94.8 0.11 2.4E-06 57.4 8.6 129 130-280 544-693 (802)
362 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.9E-07 34.3 1.0 21 562-582 1-21 (22)
363 PRK06995 flhF flagellar biosyn 94.8 0.15 3.3E-06 56.6 9.9 59 131-191 256-316 (484)
364 PF08433 KTI12: Chromatin asso 94.8 0.12 2.6E-06 53.2 8.5 25 132-156 2-26 (270)
365 PRK00625 shikimate kinase; Pro 94.8 0.025 5.4E-07 54.0 3.3 23 133-155 2-24 (173)
366 TIGR00554 panK_bact pantothena 94.8 0.14 3.1E-06 53.0 9.1 27 129-155 60-86 (290)
367 PRK12678 transcription termina 94.8 0.053 1.1E-06 60.2 6.1 92 130-223 415-514 (672)
368 COG1428 Deoxynucleoside kinase 94.7 0.026 5.6E-07 54.2 3.3 47 131-183 4-50 (216)
369 COG4618 ArpD ABC-type protease 94.7 0.085 1.8E-06 57.2 7.4 25 130-154 361-385 (580)
370 PRK05201 hslU ATP-dependent pr 94.7 0.059 1.3E-06 58.0 6.3 45 109-155 16-74 (443)
371 KOG3864 Uncharacterized conser 94.7 0.0053 1.2E-07 58.1 -1.3 70 736-822 123-193 (221)
372 cd01135 V_A-ATPase_B V/A-type 94.7 0.24 5.3E-06 50.4 10.4 95 130-224 68-178 (276)
373 PRK11823 DNA repair protein Ra 94.7 0.095 2.1E-06 58.4 8.2 87 131-223 80-167 (446)
374 PF00560 LRR_1: Leucine Rich R 94.7 0.012 2.6E-07 34.5 0.6 21 516-536 1-21 (22)
375 COG0572 Udk Uridine kinase [Nu 94.7 0.027 5.8E-07 54.9 3.3 26 130-155 7-32 (218)
376 KOG0728 26S proteasome regulat 94.6 0.52 1.1E-05 46.2 11.7 127 130-278 180-330 (404)
377 PRK14721 flhF flagellar biosyn 94.6 0.24 5.2E-06 54.1 10.8 87 131-221 191-278 (420)
378 PRK14723 flhF flagellar biosyn 94.6 0.28 6.1E-06 57.3 11.9 87 131-222 185-273 (767)
379 PF07726 AAA_3: ATPase family 94.6 0.021 4.5E-07 50.5 2.1 22 134-155 2-23 (131)
380 PF10236 DAP3: Mitochondrial r 94.6 2.2 4.7E-05 45.1 17.7 49 260-308 258-306 (309)
381 PF07724 AAA_2: AAA domain (Cd 94.5 0.034 7.3E-07 53.0 3.6 41 131-173 3-43 (171)
382 PRK09270 nucleoside triphospha 94.5 0.058 1.3E-06 54.5 5.5 27 129-155 31-57 (229)
383 COG3640 CooC CO dehydrogenase 94.5 0.08 1.7E-06 51.6 6.0 50 133-191 2-51 (255)
384 PF13245 AAA_19: Part of AAA d 94.5 0.12 2.6E-06 41.6 6.2 26 130-155 9-34 (76)
385 cd02023 UMPK Uridine monophosp 94.5 0.026 5.7E-07 55.6 2.9 23 133-155 1-23 (198)
386 PRK12597 F0F1 ATP synthase sub 94.5 0.21 4.7E-06 55.0 10.1 92 130-223 142-248 (461)
387 TIGR00150 HI0065_YjeE ATPase, 94.5 0.066 1.4E-06 48.2 5.1 25 131-155 22-46 (133)
388 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.028 6.1E-07 54.6 3.0 23 133-155 1-23 (183)
389 CHL00081 chlI Mg-protoporyphyr 94.4 0.055 1.2E-06 57.5 5.3 51 104-156 13-63 (350)
390 PRK03846 adenylylsulfate kinas 94.4 0.13 2.8E-06 50.7 7.5 27 129-155 22-48 (198)
391 TIGR02322 phosphon_PhnN phosph 94.4 0.033 7.2E-07 53.8 3.3 24 132-155 2-25 (179)
392 PRK08972 fliI flagellum-specif 94.4 0.2 4.4E-06 54.6 9.4 89 130-223 161-263 (444)
393 COG1703 ArgK Putative periplas 94.4 0.09 1.9E-06 53.3 6.2 60 120-180 38-99 (323)
394 PRK05439 pantothenate kinase; 94.4 0.25 5.4E-06 51.7 9.8 27 129-155 84-110 (311)
395 PRK00131 aroK shikimate kinase 94.4 0.04 8.7E-07 53.0 3.8 25 131-155 4-28 (175)
396 PRK10463 hydrogenase nickel in 94.3 0.093 2E-06 54.0 6.5 37 119-155 92-128 (290)
397 cd02024 NRK1 Nicotinamide ribo 94.3 0.032 6.9E-07 53.8 3.0 23 133-155 1-23 (187)
398 TIGR00416 sms DNA repair prote 94.3 0.16 3.4E-06 56.7 8.7 97 121-223 82-181 (454)
399 PRK10751 molybdopterin-guanine 94.3 0.046 9.9E-07 51.8 3.8 26 130-155 5-30 (173)
400 cd01122 GP4d_helicase GP4d_hel 94.3 0.32 7E-06 50.6 10.7 52 131-186 30-81 (271)
401 PRK06002 fliI flagellum-specif 94.3 0.13 2.9E-06 56.2 7.9 90 130-223 164-265 (450)
402 cd02029 PRK_like Phosphoribulo 94.2 1.2 2.5E-05 45.3 13.8 23 133-155 1-23 (277)
403 cd02028 UMPK_like Uridine mono 94.2 0.048 1E-06 52.6 4.0 23 133-155 1-23 (179)
404 PRK09519 recA DNA recombinatio 94.2 0.17 3.8E-06 59.2 9.1 84 131-222 60-148 (790)
405 PF00154 RecA: recA bacterial 94.2 0.13 2.7E-06 54.0 7.3 86 131-224 53-143 (322)
406 PRK13531 regulatory ATPase Rav 94.2 0.078 1.7E-06 58.3 5.9 43 109-155 21-63 (498)
407 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.11 2.5E-06 48.8 6.5 114 131-256 25-146 (157)
408 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.064 1.4E-06 53.3 4.9 24 131-154 29-52 (213)
409 PRK08927 fliI flagellum-specif 94.2 0.3 6.5E-06 53.5 10.4 89 130-223 157-259 (442)
410 TIGR02030 BchI-ChlI magnesium 94.2 0.078 1.7E-06 56.4 5.8 48 106-155 2-49 (337)
411 KOG0727 26S proteasome regulat 94.2 0.15 3.2E-06 49.8 7.1 27 129-155 187-213 (408)
412 cd00227 CPT Chloramphenicol (C 94.2 0.042 9.1E-07 52.9 3.5 25 131-155 2-26 (175)
413 PRK13765 ATP-dependent proteas 94.2 0.088 1.9E-06 60.8 6.6 74 108-188 31-104 (637)
414 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.29 6.3E-06 53.7 10.1 92 130-223 137-243 (449)
415 cd02020 CMPK Cytidine monophos 94.1 0.039 8.5E-07 51.3 3.1 23 133-155 1-23 (147)
416 PF00625 Guanylate_kin: Guanyl 94.1 0.063 1.4E-06 52.1 4.6 37 131-170 2-38 (183)
417 cd02021 GntK Gluconate kinase 94.1 0.037 8.1E-07 51.7 2.9 23 133-155 1-23 (150)
418 PRK15429 formate hydrogenlyase 94.1 0.73 1.6E-05 54.9 14.3 59 109-172 377-437 (686)
419 TIGR00073 hypB hydrogenase acc 94.1 0.049 1.1E-06 54.1 3.8 32 124-155 15-46 (207)
420 KOG1532 GTPase XAB1, interacts 94.1 0.051 1.1E-06 53.8 3.7 62 130-192 18-88 (366)
421 PF02374 ArsA_ATPase: Anion-tr 94.0 0.08 1.7E-06 55.7 5.5 44 132-178 2-45 (305)
422 COG0464 SpoVK ATPases of the A 94.0 0.48 1E-05 54.1 12.3 131 130-282 275-426 (494)
423 PRK06851 hypothetical protein; 94.0 0.55 1.2E-05 50.3 11.6 44 128-173 211-254 (367)
424 PRK13947 shikimate kinase; Pro 94.0 0.045 9.8E-07 52.4 3.3 23 133-155 3-25 (171)
425 COG0488 Uup ATPase components 94.0 0.12 2.6E-06 58.4 6.9 127 134-265 351-511 (530)
426 COG0467 RAD55 RecA-superfamily 94.0 0.076 1.7E-06 54.8 5.1 41 130-173 22-62 (260)
427 PRK05342 clpX ATP-dependent pr 94.0 0.11 2.3E-06 57.1 6.4 24 132-155 109-132 (412)
428 TIGR03263 guanyl_kin guanylate 93.9 0.043 9.3E-07 53.1 3.1 24 132-155 2-25 (180)
429 PF03308 ArgK: ArgK protein; 93.9 0.12 2.5E-06 51.7 6.0 58 121-179 17-76 (266)
430 COG0003 ArsA Predicted ATPase 93.9 0.097 2.1E-06 55.0 5.8 49 131-182 2-50 (322)
431 TIGR00708 cobA cob(I)alamin ad 93.9 0.27 5.9E-06 46.4 8.2 117 131-250 5-140 (173)
432 PF03193 DUF258: Protein of un 93.9 0.088 1.9E-06 49.1 4.9 34 118-154 25-58 (161)
433 PRK13949 shikimate kinase; Pro 93.9 0.054 1.2E-06 51.7 3.5 24 132-155 2-25 (169)
434 PRK09280 F0F1 ATP synthase sub 93.8 0.42 9.1E-06 52.6 10.6 92 130-223 143-249 (463)
435 COG1124 DppF ABC-type dipeptid 93.8 0.048 1E-06 53.5 3.0 25 130-154 32-56 (252)
436 PRK14530 adenylate kinase; Pro 93.8 0.055 1.2E-06 54.1 3.6 24 132-155 4-27 (215)
437 PRK08149 ATP synthase SpaL; Va 93.8 0.32 6.9E-06 53.2 9.6 89 130-223 150-252 (428)
438 PRK15453 phosphoribulokinase; 93.8 0.36 7.7E-06 49.3 9.2 27 129-155 3-29 (290)
439 COG1936 Predicted nucleotide k 93.7 0.051 1.1E-06 50.4 2.9 20 133-152 2-21 (180)
440 COG1224 TIP49 DNA helicase TIP 93.7 0.11 2.4E-06 53.6 5.6 54 108-162 39-95 (450)
441 PRK14527 adenylate kinase; Pro 93.7 0.067 1.4E-06 52.3 4.0 26 130-155 5-30 (191)
442 PF08477 Miro: Miro-like prote 93.7 0.056 1.2E-06 48.0 3.2 22 134-155 2-23 (119)
443 PRK10416 signal recognition pa 93.7 0.45 9.8E-06 50.3 10.4 26 130-155 113-138 (318)
444 PF03266 NTPase_1: NTPase; In 93.7 0.06 1.3E-06 51.2 3.4 23 134-156 2-24 (168)
445 cd00464 SK Shikimate kinase (S 93.6 0.059 1.3E-06 50.6 3.3 22 134-155 2-23 (154)
446 cd00071 GMPK Guanosine monopho 93.6 0.052 1.1E-06 49.7 2.8 23 133-155 1-23 (137)
447 PRK00300 gmk guanylate kinase; 93.6 0.059 1.3E-06 53.4 3.4 26 130-155 4-29 (205)
448 cd01134 V_A-ATPase_A V/A-type 93.5 0.25 5.5E-06 51.9 7.9 49 130-183 156-205 (369)
449 PTZ00494 tuzin-like protein; P 93.5 0.9 1.9E-05 48.8 11.7 163 106-278 369-543 (664)
450 TIGR01039 atpD ATP synthase, F 93.5 0.57 1.2E-05 51.5 10.8 93 130-224 142-249 (461)
451 cd01672 TMPK Thymidine monopho 93.5 0.19 4.2E-06 49.4 6.9 23 133-155 2-24 (200)
452 PRK06936 type III secretion sy 93.4 0.4 8.6E-06 52.5 9.6 89 130-223 161-263 (439)
453 PRK12339 2-phosphoglycerate ki 93.4 0.071 1.5E-06 52.1 3.6 25 131-155 3-27 (197)
454 TIGR01313 therm_gnt_kin carboh 93.4 0.053 1.2E-06 51.5 2.7 22 134-155 1-22 (163)
455 KOG2170 ATPase of the AAA+ sup 93.4 0.19 4.1E-06 50.9 6.4 100 109-224 83-190 (344)
456 PRK13407 bchI magnesium chelat 93.4 0.1 2.2E-06 55.4 5.0 49 105-155 5-53 (334)
457 PF06068 TIP49: TIP49 C-termin 93.4 0.11 2.3E-06 54.6 4.9 49 107-155 23-74 (398)
458 PRK10078 ribose 1,5-bisphospho 93.4 0.062 1.3E-06 52.3 3.1 24 132-155 3-26 (186)
459 PRK05057 aroK shikimate kinase 93.4 0.079 1.7E-06 50.8 3.7 25 131-155 4-28 (172)
460 COG2019 AdkA Archaeal adenylat 93.4 0.078 1.7E-06 48.7 3.4 25 131-155 4-28 (189)
461 PRK09302 circadian clock prote 93.4 0.59 1.3E-05 53.5 11.5 40 131-173 273-312 (509)
462 PRK13695 putative NTPase; Prov 93.3 0.12 2.7E-06 49.6 5.0 34 133-168 2-35 (174)
463 PRK14737 gmk guanylate kinase; 93.3 0.072 1.6E-06 51.7 3.3 26 130-155 3-28 (186)
464 cd00820 PEPCK_HprK Phosphoenol 93.2 0.068 1.5E-06 46.0 2.7 22 131-152 15-36 (107)
465 PRK13975 thymidylate kinase; P 93.2 0.077 1.7E-06 52.2 3.5 24 132-155 3-26 (196)
466 COG1763 MobB Molybdopterin-gua 93.2 0.09 1.9E-06 49.0 3.7 25 131-155 2-26 (161)
467 TIGR01069 mutS2 MutS2 family p 93.2 0.1 2.2E-06 62.1 5.0 180 131-333 322-522 (771)
468 TIGR00455 apsK adenylylsulfate 93.2 0.32 6.9E-06 47.2 7.8 27 129-155 16-42 (184)
469 TIGR01040 V-ATPase_V1_B V-type 93.2 0.27 5.9E-06 53.7 7.8 94 130-223 140-258 (466)
470 PF05970 PIF1: PIF1-like helic 93.2 0.21 4.7E-06 54.2 7.2 39 117-155 8-46 (364)
471 PF02562 PhoH: PhoH-like prote 93.2 0.16 3.5E-06 49.5 5.5 125 119-250 9-156 (205)
472 cd01136 ATPase_flagellum-secre 93.2 0.55 1.2E-05 49.5 9.8 89 130-223 68-170 (326)
473 PF03215 Rad17: Rad17 cell cyc 93.1 0.14 2.9E-06 57.9 5.7 49 116-169 25-78 (519)
474 TIGR00176 mobB molybdopterin-g 93.1 0.083 1.8E-06 49.5 3.4 23 133-155 1-23 (155)
475 cd02040 NifH NifH gene encodes 93.1 0.16 3.5E-06 52.8 6.0 41 132-175 2-42 (270)
476 cd00984 DnaB_C DnaB helicase C 93.1 0.68 1.5E-05 47.2 10.5 50 131-184 13-62 (242)
477 TIGR00041 DTMP_kinase thymidyl 93.1 0.23 5E-06 48.7 6.7 24 132-155 4-27 (195)
478 TIGR01041 ATP_syn_B_arch ATP s 93.1 0.35 7.6E-06 53.4 8.5 93 130-223 140-249 (458)
479 PRK05922 type III secretion sy 93.1 0.58 1.3E-05 51.2 10.1 90 130-224 156-259 (434)
480 TIGR01287 nifH nitrogenase iro 93.1 0.14 3.1E-06 53.3 5.5 38 132-172 1-38 (275)
481 PRK13768 GTPase; Provisional 93.0 0.14 2.9E-06 52.5 5.1 36 132-170 3-38 (253)
482 TIGR00764 lon_rel lon-related 93.0 0.28 6.1E-06 56.8 8.2 74 108-188 18-91 (608)
483 KOG0744 AAA+-type ATPase [Post 93.0 0.31 6.7E-06 49.8 7.3 25 132-156 178-202 (423)
484 TIGR02655 circ_KaiC circadian 93.0 0.43 9.4E-06 54.0 9.5 42 130-173 20-61 (484)
485 PRK05917 DNA polymerase III su 93.0 1.7 3.7E-05 45.0 12.8 37 119-155 6-43 (290)
486 PRK06731 flhF flagellar biosyn 93.0 0.65 1.4E-05 47.7 9.8 90 130-223 74-165 (270)
487 COG4088 Predicted nucleotide k 93.0 0.1 2.2E-06 49.7 3.6 25 132-156 2-26 (261)
488 PRK14529 adenylate kinase; Pro 93.0 0.34 7.4E-06 48.2 7.6 22 134-155 3-24 (223)
489 PLN02796 D-glycerate 3-kinase 92.9 0.64 1.4E-05 49.1 9.9 26 130-155 99-124 (347)
490 PF10662 PduV-EutP: Ethanolami 92.9 0.089 1.9E-06 47.8 3.1 24 132-155 2-25 (143)
491 PF13521 AAA_28: AAA domain; P 92.9 0.086 1.9E-06 50.0 3.2 21 134-154 2-22 (163)
492 TIGR03880 KaiC_arch_3 KaiC dom 92.9 0.59 1.3E-05 47.0 9.5 41 130-173 15-55 (224)
493 PRK13948 shikimate kinase; Pro 92.9 0.097 2.1E-06 50.4 3.6 26 130-155 9-34 (182)
494 COG1116 TauB ABC-type nitrate/ 92.9 0.084 1.8E-06 52.3 3.1 25 130-154 28-52 (248)
495 PF13086 AAA_11: AAA domain; P 92.9 0.26 5.6E-06 49.8 7.0 35 119-155 7-41 (236)
496 PRK13230 nitrogenase reductase 92.9 0.14 3.1E-06 53.5 5.1 38 132-172 2-39 (279)
497 PRK13946 shikimate kinase; Pro 92.9 0.09 2E-06 51.0 3.4 25 131-155 10-34 (184)
498 TIGR03498 FliI_clade3 flagella 92.9 0.4 8.7E-06 52.4 8.6 89 130-223 139-241 (418)
499 COG0194 Gmk Guanylate kinase [ 92.9 0.094 2E-06 49.4 3.3 24 131-154 4-27 (191)
500 KOG0736 Peroxisome assembly fa 92.8 0.7 1.5E-05 52.8 10.5 43 261-307 558-600 (953)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-88 Score=780.87 Aligned_cols=582 Identities=33% Similarity=0.533 Sum_probs=474.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC-------C-C----------
Q 038611 2 RNLERPLQELNSKKADIEATLKAECDLENKQPSNEVNDWLENVERINSEAHSIEEEVKKG-------K-Y---------- 63 (837)
Q Consensus 2 ~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~v~~wl~~~~~~~~~~~d~~d~~~~~-------~-~---------- 63 (837)
.+.+..+..|++.+..++.++++|+.+ +.....+..|...+++++|+++++++.+.-. . .
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~--~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~ 101 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAK--RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRL 101 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHH
Confidence 355667999999999999999999953 4445688999999999999999997754310 0 0
Q ss_pred ----------ccccccchhHHHHHHHHHHHHHhhcCcccccccCCCCCCccCC---CccccccchhHHHHHHHHHhcCCC
Q 038611 64 ----------FSRASLGKDAEEKIEEVKKYHQKACSFTSLVIVAPPSRGVMLP---TETLVGEKTKKVVEIIWENLMGDK 130 (837)
Q Consensus 64 ----------~~r~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vGr~~~~~~~~l~~~l~~~~ 130 (837)
..-+.+++++-+.+++++.+..++.+...-....++......| ... ||. +..++++++.|.+++
T Consensus 102 c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~--e~~~~kl~~~L~~d~ 178 (889)
T KOG4658|consen 102 CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGL--ETMLEKLWNRLMEDD 178 (889)
T ss_pred hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccH--HHHHHHHHHHhccCC
Confidence 0112345555555555555544432211110000111111122 223 998 789999999999998
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCcc--HHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENED--KVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~l~~~l 208 (837)
..+++|+||||+||||||++++|+......+|+.++||+||+.++...++++|+..++........ ..+.+..+.+.
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~- 257 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL- 257 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH-
Confidence 899999999999999999999999854889999999999999999999999999999874332222 23344444444
Q ss_pred hcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhhh-CCcce-EEeccCCHHhHHHHHHHHhCCCCCCC
Q 038611 209 KAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRS-MKCKQ-VEVELLSKEEAFNLFIDRVGSSILQV 286 (837)
Q Consensus 209 ~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~-~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~ 286 (837)
+.+|||+|||||||+..+|+.++.|+|...+||+|++|||++.||.. +++.. +++..|++++||.||++.++......
T Consensus 258 L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~ 337 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS 337 (889)
T ss_pred hccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc
Confidence 48999999999999999999999999988899999999999999998 77766 99999999999999999998874444
Q ss_pred chhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHHhc-cccCCCCchhhhhhhHhhhhcCCchhhHHHH
Q 038611 287 PTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGR-LRSLNDVDTKVFGRLEFSYHRLKDEKLRQCF 365 (837)
Q Consensus 287 ~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf 365 (837)
.+.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ....+++.+.+++++.+||+.|| +++|.||
T Consensus 338 ~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~CF 416 (889)
T KOG4658|consen 338 HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSCF 416 (889)
T ss_pred cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHHH
Confidence 344899999999999999999999999999999999999999988776 33445667899999999999999 9999999
Q ss_pred hhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHHHHHHHhhcccccccc---cceeeehhHHHHHHHHHHh
Q 038611 366 LYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTILNRLVNCCLLESARY---GRCVKMHDLIRDMALHIIS 442 (837)
Q Consensus 366 l~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~---~~~~~mHdlv~d~a~~~~~ 442 (837)
+|||+||+||.|+++.||.+|+||||+.+..++..++++|+.|+.+|++++|++...+ ..+|+|||+||++|.++++
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 9999999999999999999999999999977788999999999999999999998763 2789999999999999999
Q ss_pred -----hcCceEEeccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcC-ccccChhHhhcCCC
Q 038611 443 -----KSHLFMVKAREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNIN-LQWIPECFFAHMHG 516 (837)
Q Consensus 443 -----~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~ 516 (837)
+++ .++..+....+.|....| ..++++++.+|.+..++.. ..++.|++|.+..|.. +..++..+|..++.
T Consensus 497 ~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~ 572 (889)
T KOG4658|consen 497 DFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPL 572 (889)
T ss_pred cccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcc
Confidence 565 566666566667766555 6799999999999888654 5778999999999853 78889999999999
Q ss_pred CcEEEecCCC-CcccChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCC-cCccccccccCCCCCCEEeccC
Q 038611 517 LKILNLSFTA-IEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGT-SIEEVPEGMQMLENLSHLYLYS 593 (837)
Q Consensus 517 L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~ 593 (837)
|++|||++|. +.++|++|+.|.|||||++++ +.++.+| .+++|+.|.+|++..+ .+..+|..+..|++|++|.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 9999999876 789999999999999999998 5677888 7888888888888877 3444544455688888888755
Q ss_pred CC
Q 038611 594 PP 595 (837)
Q Consensus 594 ~~ 595 (837)
..
T Consensus 652 s~ 653 (889)
T KOG4658|consen 652 SA 653 (889)
T ss_pred cc
Confidence 43
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.2e-61 Score=587.63 Aligned_cols=503 Identities=22% Similarity=0.323 Sum_probs=369.7
Q ss_pred CccccccchhHHHHHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe---CCC--------
Q 038611 107 TETLVGEKTKKVVEIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV---SQP-------- 173 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v---s~~-------- 173 (837)
...+||+ +..++++..++. .+++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 183 ~~~~vG~--~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 183 FEDFVGI--EDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccch--HHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccc
Confidence 3478999 667778877764 4578999999999999999999999976 457888877742 111
Q ss_pred ---cC-HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCC
Q 038611 174 ---LD-LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRS 249 (837)
Q Consensus 174 ---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~ 249 (837)
++ ...++++++.++.......... ...+.+. +.++|+||||||||+..+|+.+.....+.++||+||||||+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~---~~~~~~~-L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYH---LGAMEER-LKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCC---HHHHHHH-HhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 11 1234555555543322111111 1223333 47899999999999999998887666566889999999999
Q ss_pred hhHhhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHH
Q 038611 250 YRVCRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNAL 328 (837)
Q Consensus 250 ~~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l 328 (837)
++++..+++.. |+++.|+.++||+||++.|+....+ ++.+.+++++|+++|+|+|||++++|++|+++ +..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 99998877766 9999999999999999999876332 23488999999999999999999999999985 679999999
Q ss_pred HHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHH
Q 038611 329 NELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTI 408 (837)
Q Consensus 329 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~ 408 (837)
++++... +.++..+|++||+.|+++..|.||+++|+|+.++.++ .+..|++.+.... +..
T Consensus 412 ~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~ 471 (1153)
T PLN03210 412 PRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIG 471 (1153)
T ss_pred HHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhC
Confidence 9987532 3689999999999998456899999999999987554 4677888765432 123
Q ss_pred HHHHHhhcccccccccceeeehhHHHHHHHHHHhhcCc------eEEeccc------------ccc-------C-----C
Q 038611 409 LNRLVNCCLLESARYGRCVKMHDLIRDMALHIISKSHL------FMVKARE------------HLL-------E-----F 458 (837)
Q Consensus 409 l~~L~~~~ll~~~~~~~~~~mHdlv~d~a~~~~~~~~~------~~~~~~~------------~~~-------~-----~ 458 (837)
++.|++++|++... ..+.|||++|+||+++++++.. +.+.... .+. . +
T Consensus 472 l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 472 LKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred hHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 88999999998754 3599999999999999976531 1111000 000 0 0
Q ss_pred C-chhhhcccccEEEccccCCC-------CCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 459 P-GEQEWKANLERVSLMMNDID-------EIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 459 p-~~~~~~~~~~~l~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
. .......+++.+.+..+... .+|..+..-.++||.|.+.++ .+..+|..+ .+.+|+.|+++++.+..+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f--~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF--RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC--CccCCcEEECcCcccccc
Confidence 0 00111233344444332111 122222111245777777666 566777654 568899999999999999
Q ss_pred ChhhhcccccceecccCccccCCCccccccCCCCEEeccCC-cCccccccccCCCCCCEEeccCCC-CCCCCCCcccCCc
Q 038611 531 PNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGT-SIEEVPEGMQMLENLSHLYLYSPP-LKELPAGLLPRLR 608 (837)
Q Consensus 531 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~ 608 (837)
|..+..+++|++|+|++|+.++.+|.++.+++|++|++++| .+..+|..++++++|++|++++|. +..+|.+ + +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCC
Confidence 98899999999999999888999998899999999999998 788899999999999999999975 8888886 3 789
Q ss_pred cCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhh
Q 038611 609 KLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIY 652 (837)
Q Consensus 609 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~ 652 (837)
+|+.|++..|.... ..+. .. .+|+.|++..+.+..+|..
T Consensus 705 sL~~L~Lsgc~~L~-~~p~---~~-~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 705 SLYRLNLSGCSRLK-SFPD---IS-TNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CCCEEeCCCCCCcc-cccc---cc-CCcCeeecCCCcccccccc
Confidence 99999995443221 1111 13 6788899988887766643
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.1e-43 Score=371.84 Aligned_cols=276 Identities=36% Similarity=0.635 Sum_probs=222.6
Q ss_pred hHHHHHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC-
Q 038611 116 KKVVEIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLP- 192 (837)
Q Consensus 116 ~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 192 (837)
|.++++|.+.|.+ ++.++|+|+|+||+||||||++++++. .....|+.++|+.++...+...++..|+.+++....
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 6789999999987 789999999999999999999999986 367899999999999999999999999999988743
Q ss_pred --CCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhhhCCc-c-eEEeccCCH
Q 038611 193 --ENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSMKC-K-QVEVELLSK 268 (837)
Q Consensus 193 --~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~-~-~~~l~~L~~ 268 (837)
...+.......+.+.+ .++++||||||||+...|+.+...++....||+||||||+..++..+.. . .+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhh-ccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334445555555555 7789999999999999998888777776779999999999999877764 3 399999999
Q ss_pred HhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHHhccccCCCCchhhhhh
Q 038611 269 EEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGR 348 (837)
Q Consensus 269 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~ 348 (837)
++|++||.+.++......++...+.+++|+++|+|+||||.++|++|+.+.+..+|+.+++++........+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998766422223367789999999999999999999999776677899999998887765544466889999
Q ss_pred hHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCcc
Q 038611 349 LEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEE 394 (837)
Q Consensus 349 l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~ 394 (837)
+.+||+.|| +++|.||+|||+||+++.|+++.|+++|++||||..
T Consensus 240 l~~s~~~L~-~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLP-DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSH-TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCC-ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999 799999999999999999999999999999999986
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.2e-20 Score=228.54 Aligned_cols=176 Identities=23% Similarity=0.315 Sum_probs=97.3
Q ss_pred cccccEEEccccCCC-CCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc-ccChhhhcccccce
Q 038611 465 KANLERVSLMMNDID-EIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE-VLPNSVSDLMNLIS 542 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 542 (837)
...++.+++++|.+. .+|...+..+++|+.|++++|.....+|. +.+++|++|+|++|.+. .+|..++++++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 345555666555554 34444444555666666655532233342 34555666666666554 45555666666666
Q ss_pred ecccCccccCCCc-cccccCCCCEEeccCCcCc-cccccccCCCCCCEEeccCCCCC-CCCCCcccCCccCcEEEccccc
Q 038611 543 LLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIE-EVPEGMQMLENLSHLYLYSPPLK-ELPAGLLPRLRKLCRLSLYFGW 619 (837)
Q Consensus 543 L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~~p~~~l~~l~~L~~L~l~~~~ 619 (837)
|++++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|++ ..+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L-~~n 246 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL-VYN 246 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC-cCc
Confidence 6666655445555 5666666666666666443 35556666666666666666544 34443 566666666666 333
Q ss_pred hhhhhhHHHHhhhhhccCeeEEeeccc
Q 038611 620 EALEETVEETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 620 ~~~~~~~~~l~~l~~~L~~L~l~~~~~ 646 (837)
......+..++.+ ++|+.|+++.|.+
T Consensus 247 ~l~~~~p~~l~~l-~~L~~L~L~~n~l 272 (968)
T PLN00113 247 NLTGPIPSSLGNL-KNLQYLFLYQNKL 272 (968)
T ss_pred eeccccChhHhCC-CCCCEEECcCCee
Confidence 3333344455566 6666666655544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=3.7e-20 Score=229.04 Aligned_cols=332 Identities=18% Similarity=0.142 Sum_probs=194.7
Q ss_pred hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc-ccChhhhcccccce
Q 038611 464 WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE-VLPNSVSDLMNLIS 542 (837)
Q Consensus 464 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 542 (837)
...+++++++++|.+....+. ..+++|++|++++|.....+|.. ++++++|++|+|++|.+. .+|.+++++++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 445777888877776543221 34677888888777433345554 477788888888877754 66777778888888
Q ss_pred ecccCccccCCCc-cccccCCCCEEeccCCcCc-cccccccCCCCCCEEeccCCCCC-CCCCCcccCCccCcEEEccccc
Q 038611 543 LLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIE-EVPEGMQMLENLSHLYLYSPPLK-ELPAGLLPRLRKLCRLSLYFGW 619 (837)
Q Consensus 543 L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~~p~~~l~~l~~L~~L~l~~~~ 619 (837)
|+|++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|+.|++ ..+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L-~~n 270 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFL-YQN 270 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEEC-cCC
Confidence 8887776666677 6777888888888877665 57777777888888888777765 44444 677788888877 444
Q ss_pred hhhhhhHHHHhhhhhccCeeEEeeccccc-hhhhhhcccCCccceEEEEeccCcC-----CCCccccceeeeccchhhhh
Q 038611 620 EALEETVEETGRLSDRLDTFEGHFSKLNN-FNIYVKSSDGRESEKYCLMLSPDYV-----GDSVIADLEVDRSVCLIANK 693 (837)
Q Consensus 620 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~~~~~~~~~~~-----~~~~~~~~~l~l~~~~~~~~ 693 (837)
......+..+..+ ++|+.|+++.|.+.. ++..+. ...+|..+.+..+.... ......++.+.++++.....
T Consensus 271 ~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 271 KLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred eeeccCchhHhhc-cCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 4444445666777 777888777776542 222221 12334444433222110 11122233444443311100
Q ss_pred ccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEec
Q 038611 694 ICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVC 773 (837)
Q Consensus 694 ~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~ 773 (837)
+ ...+..+++|+.|+++++.....+|.++ ..+. +|+.|++++|+....+|. .+..+++|+.|+++
T Consensus 348 ~---p~~l~~~~~L~~L~Ls~n~l~~~~p~~~---------~~~~-~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~ 412 (968)
T PLN00113 348 I---PKNLGKHNNLTVLDLSTNNLTGEIPEGL---------CSSG-NLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQ 412 (968)
T ss_pred C---ChHHhCCCCCcEEECCCCeeEeeCChhH---------hCcC-CCCEEECcCCEecccCCH--HHhCCCCCCEEECc
Confidence 0 0112334555666655544222223222 1334 677777777644334332 45567778888877
Q ss_pred cccchhhhhccccchhhhhcccccccccccCCCcceEecccccccccccCCCCcccCCCCccC
Q 038611 774 GCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCSDNGVLVCDPLQEI 836 (837)
Q Consensus 774 ~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~~~~~~~~~sL~~l 836 (837)
+|.-...++. ....+|+|+.|+++++.--..++. ....+++|+.|
T Consensus 413 ~n~l~~~~p~----------------~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L 457 (968)
T PLN00113 413 DNSFSGELPS----------------EFTKLPLVYFLDISNNNLQGRINS--RKWDMPSLQML 457 (968)
T ss_pred CCEeeeECCh----------------hHhcCCCCCEEECcCCcccCccCh--hhccCCCCcEE
Confidence 7743323321 455688888888888754444443 33456777765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.2e-22 Score=210.42 Aligned_cols=326 Identities=22% Similarity=0.252 Sum_probs=234.9
Q ss_pred eEEeccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCc-CccccChhHhhcCCCCcEEEecCC
Q 038611 447 FMVKAREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNI-NLQWIPECFFAHMHGLKILNLSFT 525 (837)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~ 525 (837)
+...+...+..+|.+.....+++|+++.+|++..+-.. .+.++.||++++..|. ....+|.++| .+..|.+||||+|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 45555666778888877788999999999998877544 3788999999999884 2345899885 7999999999999
Q ss_pred CCcccChhhhcccccceecccCccccCCCc-c-ccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCc
Q 038611 526 AIEVLPNSVSDLMNLISLLLQRCRRLKRVP-S-VAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGL 603 (837)
Q Consensus 526 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~ 603 (837)
.+...|..+...+++-.|+|++ +.+..+| + +.+|..|-+|||++|.++.+|+.+..|.+|++|.+++|++..+.-..
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 9999999999999999999999 5788899 4 88999999999999999999999999999999999999877654333
Q ss_pred ccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCcccccee
Q 038611 604 LPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEV 683 (837)
Q Consensus 604 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l 683 (837)
++.|++|++|.++.........+..+..| .+|..++++.|++...|.-+.. ..+|..++++.+.+ ..+
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS~N~i---------teL 260 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLPIVPECLYK--LRNLRRLNLSGNKI---------TEL 260 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCCcchHHHhh--hhhhheeccCcCce---------eee
Confidence 77889999999954444445556778888 9999999999998877654332 22344443332211 001
Q ss_pred eeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccc---------------ccc-ccccccccccEEEEe
Q 038611 684 DRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQ---------------GLV-NIGKFSHDLKVLRFY 747 (837)
Q Consensus 684 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~---------------~L~-~~~~~~~~L~~L~l~ 747 (837)
.+ | ...-.+|+.|+++.+. +..+|+...+|. .+. .++.+. +|+.+...
T Consensus 261 ~~--~------------~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~-~Levf~aa 324 (1255)
T KOG0444|consen 261 NM--T------------EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI-QLEVFHAA 324 (1255)
T ss_pred ec--c------------HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhh-hhHHHHhh
Confidence 00 0 0112344444443322 233333322221 111 145666 77777777
Q ss_pred cCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccccccccccC
Q 038611 748 YCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCS 823 (837)
Q Consensus 748 ~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~ 823 (837)
+ ++++-+|. .+.+|+.|+.|.++.+ .+-.+|. .+.-+|-|+.|+++..|+|.-=+.
T Consensus 325 n-N~LElVPE--glcRC~kL~kL~L~~N-rLiTLPe----------------aIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 325 N-NKLELVPE--GLCRCVKLQKLKLDHN-RLITLPE----------------AIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred c-cccccCch--hhhhhHHHHHhccccc-ceeechh----------------hhhhcCCcceeeccCCcCccCCCC
Confidence 7 46666543 4667888888888744 5555654 567789999999999999875554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=8.8e-21 Score=198.73 Aligned_cols=190 Identities=26% Similarity=0.288 Sum_probs=141.0
Q ss_pred ccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hh
Q 038611 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NS 533 (837)
Q Consensus 455 ~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~ 533 (837)
+..+|....-..+++++++.+|.|..+.+.....++.||+|+|+.| .+..+|...|..-.++++|+|++|.|..+- .+
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccccccc
Confidence 4455655445567888888888888877766677788888888888 677777766677677888888888877664 56
Q ss_pred hhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCCCCCCCcccCCccC
Q 038611 534 VSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL 610 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 610 (837)
+..+.+|-.|.|+. +.++.+| .|.+|++|+.|+|..|.|+.+ -..+..|++|+.|.+..|.+..+..|.|-.|.++
T Consensus 193 F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred ccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 77777888888887 4677777 577788888888888876654 2356778888888888888888888878888888
Q ss_pred cEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccc
Q 038611 611 CRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 611 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
++|++ ..+......-..+-+| +.|+.|++++|.+..
T Consensus 272 e~l~L-~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 272 EHLNL-ETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQR 307 (873)
T ss_pred ceeec-ccchhhhhhccccccc-chhhhhccchhhhhe
Confidence 88888 5555555555666677 888888888776543
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=3.2e-18 Score=211.77 Aligned_cols=308 Identities=20% Similarity=0.259 Sum_probs=187.5
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCC-CcccChhhhccccccee
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA-IEVLPNSVSDLMNLISL 543 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L 543 (837)
+.+++.+.+..+.+..+|..+ ...+|+.|++.++ .+..++..+ ..+++|++|+|+++. +..+| .++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s-~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGS-KLEKLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCc-ccccccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence 346888888888888888764 4578888888887 577777665 778888888888765 66777 47788888888
Q ss_pred cccCccccCCCc-cccccCCCCEEeccCC-cCccccccccCCCCCCEEeccCCC-CCCCCCCcccCCccCcEEEccccch
Q 038611 544 LLQRCRRLKRVP-SVAKLLALQHLDLRGT-SIEEVPEGMQMLENLSHLYLYSPP-LKELPAGLLPRLRKLCRLSLYFGWE 620 (837)
Q Consensus 544 ~L~~~~~l~~lp-~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~ 620 (837)
+|++|..+..+| +++++++|++|++++| .+..+|..+ ++++|++|++++|. +..+|.. .++|+.|++. ++.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~-~n~ 736 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLD-ETA 736 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecC-CCc
Confidence 888888888888 7888888888888887 677888766 68888888888875 5555532 3567777773 322
Q ss_pred hhhhhHHHHhhhhhccCeeEEeeccccchhhhhh------cccCCccceEEEEeccC-----cCCCCccccceeeeccch
Q 038611 621 ALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVK------SSDGRESEKYCLMLSPD-----YVGDSVIADLEVDRSVCL 689 (837)
Q Consensus 621 ~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~------~~~~~~L~~~~~~~~~~-----~~~~~~~~~~~l~l~~~~ 689 (837)
... .+.. ..+ .+|+.|.+..+....+..... ......|..+.+..+.. ........+..+.+++|.
T Consensus 737 i~~-lP~~-~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 737 IEE-FPSN-LRL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccc-cccc-ccc-cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 211 1111 135 566666654432111110000 00112233333322111 011223345666666665
Q ss_pred hhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccE
Q 038611 690 IANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLEC 769 (837)
Q Consensus 690 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~ 769 (837)
.+..++... .+++|+.|++++|..+..+|.... +|+.|+|+++ .++.+|. .+..+++|+.
T Consensus 814 ~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~~~~-------------nL~~L~Ls~n-~i~~iP~--si~~l~~L~~ 873 (1153)
T PLN03210 814 NLETLPTGI----NLESLESLDLSGCSRLRTFPDIST-------------NISDLNLSRT-GIEEVPW--WIEKFSNLSF 873 (1153)
T ss_pred CcCeeCCCC----CccccCEEECCCCCcccccccccc-------------ccCEeECCCC-CCccChH--HHhcCCCCCE
Confidence 555544332 256777777777766555443322 5555555553 4444432 3445666666
Q ss_pred EEeccccchhhhhccccchhhhhcccccccccccCCCcceEeccccccccccc
Q 038611 770 LEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFC 822 (837)
Q Consensus 770 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~ 822 (837)
|++++|++++.++. ....+++|+.|++++|++|..+.
T Consensus 874 L~L~~C~~L~~l~~----------------~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 874 LDMNGCNNLQRVSL----------------NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred EECCCCCCcCccCc----------------ccccccCCCeeecCCCccccccc
Confidence 66666666665543 23445666666666666665543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.6e-18 Score=181.93 Aligned_cols=278 Identities=24% Similarity=0.251 Sum_probs=191.3
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceec
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLL 544 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~ 544 (837)
..++.++++.|.+.+++...|+.-.+++.|+|++| .++.+..+.|.++..|.+|.|+.|.++.+|. ++.+|++|+.|+
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 45788888888888888877787788888888888 7887877778888888888888888888884 455688888888
Q ss_pred ccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchh
Q 038611 545 LQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEA 621 (837)
Q Consensus 545 L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 621 (837)
|..| .+...- .|.+|.+|+.|.+..|+|..+..+ +..|.++++|+|..|++..+..+.+-+|+.|+.|++ +.+..
T Consensus 228 LnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l-S~NaI 305 (873)
T KOG4194|consen 228 LNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL-SYNAI 305 (873)
T ss_pred cccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc-chhhh
Confidence 8874 455553 588888888888888888887765 477888888888888888887777778888888888 44444
Q ss_pred hhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCC-Cc
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKE-KP 700 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~ 700 (837)
....++.-.-. ++|+.|+++.|.+..++..... ...+|+.+ .++.. ++..-. ..
T Consensus 306 ~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~-~L~~Le~L-------------------nLs~N----si~~l~e~a 360 (873)
T KOG4194|consen 306 QRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFR-VLSQLEEL-------------------NLSHN----SIDHLAEGA 360 (873)
T ss_pred heeecchhhhc-ccceeEeccccccccCChhHHH-HHHHhhhh-------------------ccccc----chHHHHhhH
Confidence 44444555555 7788888888877665432110 00112222 22111 111101 11
Q ss_pred ccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhh
Q 038611 701 IVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEE 780 (837)
Q Consensus 701 ~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 780 (837)
+..+.+|++|+++.+...-.+.+.. .. ...++ +|+.|.+.+ ++++.++. ..+..|++||+|++.++ -|..
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa----~~--f~gl~-~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~N-aiaS 430 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAA----VA--FNGLP-SLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDN-AIAS 430 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecch----hh--hccch-hhhheeecC-ceeeecch-hhhccCcccceecCCCC-ccee
Confidence 4456888888887665211111110 00 22477 999999999 58888854 46788999999999987 3444
Q ss_pred h
Q 038611 781 I 781 (837)
Q Consensus 781 i 781 (837)
|
T Consensus 431 I 431 (873)
T KOG4194|consen 431 I 431 (873)
T ss_pred e
Confidence 4
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=1.6e-18 Score=182.94 Aligned_cols=192 Identities=26% Similarity=0.368 Sum_probs=157.8
Q ss_pred cCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhh
Q 038611 456 LEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVS 535 (837)
Q Consensus 456 ~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~ 535 (837)
..+|.+....+.++.+++++|.+.++|... ...+++-+|++++| .+..||..+|-++..|-+||||+|.++.+|+.+.
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIR 170 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHH
Confidence 357777777788999999999999998875 67789999999999 8999999999999999999999999999999999
Q ss_pred cccccceecccCccccCCCc--cccccCCCCEEeccCC--cCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCc
Q 038611 536 DLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGT--SIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLC 611 (837)
Q Consensus 536 ~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~ 611 (837)
.|.+|++|.|++|. +.... .+..+++|++|.++++ .+..+|.++..|.||+.++++.|.+..+|.. +-++.+|+
T Consensus 171 RL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec-ly~l~~Lr 248 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC-LYKLRNLR 248 (1255)
T ss_pred HHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH-Hhhhhhhh
Confidence 99999999999964 32222 3455678888999988 4667999999999999999999999999887 78899999
Q ss_pred EEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhh
Q 038611 612 RLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVK 654 (837)
Q Consensus 612 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~ 654 (837)
.|++ +.+..+.... ..+.. .+|++|+++.|.+..+|..+.
T Consensus 249 rLNL-S~N~iteL~~-~~~~W-~~lEtLNlSrNQLt~LP~avc 288 (1255)
T KOG0444|consen 249 RLNL-SGNKITELNM-TEGEW-ENLETLNLSRNQLTVLPDAVC 288 (1255)
T ss_pred eecc-CcCceeeeec-cHHHH-hhhhhhccccchhccchHHHh
Confidence 9999 4444443322 23455 788888998888887776544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=2.1e-17 Score=166.40 Aligned_cols=154 Identities=26% Similarity=0.381 Sum_probs=104.5
Q ss_pred ccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhh
Q 038611 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSV 534 (837)
Q Consensus 455 ~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i 534 (837)
+..+|+......++..+.+.+|.+..+|+.... ++.|+.|+..+| .++.+|+.+ +.+..|..|+|..|.+..+| +|
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-ef 224 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LLETLPPEL-GGLESLELLYLRRNKIRFLP-EF 224 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hhhcCChhh-cchhhhHHHHhhhcccccCC-CC
Confidence 344555544445566666666666666665433 666777777666 566677665 67777777777777777777 56
Q ss_pred hcccccceecccCccccCCCc-c-ccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcE
Q 038611 535 SDLMNLISLLLQRCRRLKRVP-S-VAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCR 612 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~ 612 (837)
..+..|..|++.. +.++.+| . ..++.+|.+||++.|+++++|.++..+++|..||+++|.++.+|.. +|+| +|+.
T Consensus 225 ~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKF 301 (565)
T ss_pred CccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeee
Confidence 6777777777765 4566667 3 3467777777777777777777777777777777777777777766 6777 7777
Q ss_pred EEc
Q 038611 613 LSL 615 (837)
Q Consensus 613 L~l 615 (837)
|.+
T Consensus 302 L~l 304 (565)
T KOG0472|consen 302 LAL 304 (565)
T ss_pred hhh
Confidence 766
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=1e-17 Score=168.61 Aligned_cols=177 Identities=28% Similarity=0.449 Sum_probs=149.6
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
..+..+.+++|++..+.... ..+..|.+|.+++| .+..+|+.+ +.+..+..|+.++|.+..+|..++.+..|+.|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl-~nL~~l~vl~~~~n-~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDL-KNLACLTVLNVHDN-KLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhh-hcccceeEEEeccc-hhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 35667778888888775543 67888999999998 677788876 8899999999999999999999999999999999
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
++| .+..+| +++.+..|+.|+..+|++.++|.++.++.+|..+++.+|.++.+|+..+. ++.|++|+. +.+....
T Consensus 122 s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~--~~N~L~t 197 (565)
T KOG0472|consen 122 SSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDC--NSNLLET 197 (565)
T ss_pred ccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhccc--chhhhhc
Confidence 995 456666 89999999999999999999999999999999999999999999988554 999999987 3345556
Q ss_pred hHHHHhhhhhccCeeEEeeccccchh
Q 038611 625 TVEETGRLSDRLDTFEGHFSKLNNFN 650 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~~~~~~~ 650 (837)
.+.+++.+ .+|..|+++.|.+..+|
T Consensus 198 lP~~lg~l-~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 198 LPPELGGL-ESLELLYLRRNKIRFLP 222 (565)
T ss_pred CChhhcch-hhhHHHHhhhcccccCC
Confidence 67889999 99999999887665444
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=3.3e-16 Score=139.72 Aligned_cols=159 Identities=30% Similarity=0.382 Sum_probs=131.6
Q ss_pred CCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cccccCCCCEE
Q 038611 488 HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHL 566 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 566 (837)
.+.++..|.+++| .+..+|+.+ ..+.+|++|++++|.++.+|.+++.++.||.|++.- +.+..+| .++.++.|++|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 5567777788888 677788876 889999999999999999999999999999999986 5688888 89999999999
Q ss_pred eccCCcCc--cccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeec
Q 038611 567 DLRGTSIE--EVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 567 ~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 644 (837)
|+..|++. .+|..+-.|+.|+-|+++.|.+.-+|+. +++|++||.|.+.. +. ....+.+++.| ++|++|.+.+|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrd-nd-ll~lpkeig~l-t~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRD-ND-LLSLPKEIGDL-TRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeecc-Cc-hhhCcHHHHHH-HHHHHHhcccc
Confidence 99988665 5888888888999999999999999988 79999999998833 22 23356888999 99999999998
Q ss_pred cccchhhhh
Q 038611 645 KLNNFNIYV 653 (837)
Q Consensus 645 ~~~~~~~~~ 653 (837)
.+..+|.-+
T Consensus 184 rl~vlppel 192 (264)
T KOG0617|consen 184 RLTVLPPEL 192 (264)
T ss_pred eeeecChhh
Confidence 887766433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.8e-13 Score=157.23 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=97.5
Q ss_pred cccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh
Q 038611 454 HLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS 533 (837)
Q Consensus 454 ~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 533 (837)
.+..+|.. ...+++.+++..|.++.+|.. .++|++|++++| .+..+|. ..++|+.|++++|.+..+|..
T Consensus 212 ~LtsLP~~--l~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~l 280 (788)
T PRK15387 212 GLTTLPDC--LPAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLPAL 280 (788)
T ss_pred CCCcCCcc--hhcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccC----cccccceeeccCCchhhhhhc
Confidence 44555553 224677777777777776642 367777777777 5666664 235677777777777766642
Q ss_pred hhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEE
Q 038611 534 VSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRL 613 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 613 (837)
..+|+.|++++| .++.+|. .+++|++|++++|.+..+|.. ..+|+.|++++|.+..+|. + ..+|+.|
T Consensus 281 ---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~--l--p~~Lq~L 347 (788)
T PRK15387 281 ---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPT--L--PSGLQEL 347 (788)
T ss_pred ---hhhcCEEECcCC-ccccccc--cccccceeECCCCccccCCCC---cccccccccccCccccccc--c--ccccceE
Confidence 245667777774 4566663 235677777777777766652 2346667777777766664 1 1466777
Q ss_pred EccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 614 SLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 614 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
++ .++..... ..+..+|+.|+++.|.+..+
T Consensus 348 dL-S~N~Ls~L-----P~lp~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 348 SV-SDNQLASL-----PTLPSELYKLWAYNNRLTSL 377 (788)
T ss_pred ec-CCCccCCC-----CCCCcccceehhhccccccC
Confidence 77 33332211 11114455556655554443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=8.7e-14 Score=161.07 Aligned_cols=121 Identities=27% Similarity=0.442 Sum_probs=61.9
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccC
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQR 547 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 547 (837)
...+.+..+.++.+|... .++|+.|++++| .+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACI---PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCccc---ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 344555555555554432 134555555555 4555555432 355566666555555554332 2455555555
Q ss_pred ccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCC
Q 038611 548 CRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAG 602 (837)
Q Consensus 548 ~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~ 602 (837)
|. +..+| .+. .+|++|++++|.+..+|..+. ++|++|++++|.++.+|..
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc
Confidence 32 44455 332 355566665555555555432 3556666665555555543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=2.3e-15 Score=167.18 Aligned_cols=137 Identities=27% Similarity=0.304 Sum_probs=101.2
Q ss_pred ccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhh
Q 038611 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSV 534 (837)
Q Consensus 455 ~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i 534 (837)
+..+|......+.+..+++..|.+-..|-.+..++-+|++|++++| .+..+|..+ ..+.+|+.|.++.|.|.++|.++
T Consensus 10 l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~ 87 (1081)
T KOG0618|consen 10 LELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSC 87 (1081)
T ss_pred CcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchh-hhHHHHhhcccchhhHhhCchhh
Confidence 3445554433445667777777666555444445556888888887 666777665 67788888888888888888888
Q ss_pred hcccccceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCC
Q 038611 535 SDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSP 594 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 594 (837)
+++.+|++|+|.+ +.+..+| ++..+++|++|+++.|.+..+|.-+..++.+..+..++|
T Consensus 88 ~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhhhcchhheecc-chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 8888888888886 6788888 888888888888888888888877777777777777666
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=4.1e-12 Score=156.75 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=180.1
Q ss_pred CCccccccchhHHHHHHHHHhcC-CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENLMG-DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEI 183 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i 183 (837)
....+|-| .+..+. +.. ...+++.|+|++|.||||++.++.+.. +.++|++... ..+...+...+
T Consensus 12 ~~~~~~~R--~rl~~~----l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 12 RLHNTVVR--ERLLAK----LSGANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CccccCcc--hHHHHH----HhcccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHH
Confidence 33466777 333333 332 357999999999999999999987532 2589999864 44666676777
Q ss_pred HHHhcCCCCCC-------------ccHHHHHHHHHHHHhc-CCeEEEEEeCCCCCc--ccc-ccccCCCCCCCCcEEEEE
Q 038611 184 ATALKESLPEN-------------EDKVSRAGRLLGMLKA-KAKFVLILDDMWEAF--PLE-KVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 184 ~~~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~-~l~~~~~~~~~~s~iivT 246 (837)
+..++...... ......+..+...+.. +.+++|||||++... ... .+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 77664211110 1122233344444433 679999999997642 112 222222223456688899
Q ss_pred eCChhHh---hh-CCcceEEec----cCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCC
Q 038611 247 TRSYRVC---RS-MKCKQVEVE----LLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGE 318 (837)
Q Consensus 247 tR~~~v~---~~-~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~ 318 (837)
||...-. .. ......++. +|+.+|+.+||....+... -.+.+..|.+.|+|+|+++..++..++..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9984211 11 111114555 9999999999988776542 23467899999999999999998777543
Q ss_pred cCHHHHHHHHHHHHhccccCCCCchhhhhhhHh-hhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchh
Q 038611 319 EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEF-SYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKD 397 (837)
Q Consensus 319 ~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~ 397 (837)
.... ......+.. .....+...+.- .++.|| +..+..++..|+++ . +.. .+ +..+..
T Consensus 233 ~~~~--~~~~~~~~~------~~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~~~-~--~~~-~l-----~~~l~~---- 290 (903)
T PRK04841 233 NSSL--HDSARRLAG------INASHLSDYLVEEVLDNVD-LETRHFLLRCSVLR-S--MND-AL-----IVRVTG---- 290 (903)
T ss_pred CCch--hhhhHhhcC------CCchhHHHHHHHHHHhcCC-HHHHHHHHHhcccc-c--CCH-HH-----HHHHcC----
Confidence 2210 001111100 011234444333 478999 89999999999987 3 222 22 111111
Q ss_pred HHHHHHhHHHHHHHHHhhcccccc-c-ccceeeehhHHHHHHHHHHh
Q 038611 398 VQAKYDRGHTILNRLVNCCLLESA-R-YGRCVKMHDLIRDMALHIIS 442 (837)
Q Consensus 398 ~~~~~~~~~~~l~~L~~~~ll~~~-~-~~~~~~mHdlv~d~a~~~~~ 442 (837)
.+.+...+++|.+++++... + ++..|++|+++++++++...
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 12346689999999997643 2 33578899999999988763
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=2.2e-15 Score=134.44 Aligned_cols=136 Identities=28% Similarity=0.437 Sum_probs=70.0
Q ss_pred hhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc--ccChhhhccccc
Q 038611 463 EWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE--VLPNSVSDLMNL 540 (837)
Q Consensus 463 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L 540 (837)
....+++.+.+.+|.++++|... +.++.||.|.+..| .+..+|.+| +.++.|.+|||++|++. .+|..+..+..|
T Consensus 53 a~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmn-rl~~lprgf-gs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMN-RLNILPRGF-GSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred HHhhhhhhhhcccchhhhcChhh-hhchhhhheecchh-hhhcCcccc-CCCchhhhhhccccccccccCCcchhHHHHH
Confidence 33344555555555555555443 44555555555544 344444443 55555555555555543 345555555555
Q ss_pred ceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCC
Q 038611 541 ISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAG 602 (837)
Q Consensus 541 ~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~ 602 (837)
|-|.|++ +..+.+| .+++|++||.|.++.|.+-++|..++.++.|+.|.+.+|.+..+|++
T Consensus 130 ralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 130 RALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 5555555 3344444 45555555555555555555555555555555555555555555544
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-15 Score=169.31 Aligned_cols=93 Identities=25% Similarity=0.354 Sum_probs=74.8
Q ss_pred ccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh
Q 038611 453 EHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532 (837)
Q Consensus 453 ~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 532 (837)
.....+|.......+++.+.++.|.+..+|... .++.+|+.|.|.+| .+..+|.++ ..+++|++||+++|.+..+|.
T Consensus 55 n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n-~l~~lP~~~-~~lknl~~LdlS~N~f~~~Pl 131 (1081)
T KOG0618|consen 55 NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNN-RLQSLPASI-SELKNLQYLDLSFNHFGPIPL 131 (1081)
T ss_pred cccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccc-hhhcCchhH-HhhhcccccccchhccCCCch
Confidence 344567766666678999999999999998654 78899999999988 788888886 899999999999999888887
Q ss_pred hhhcccccceecccCc
Q 038611 533 SVSDLMNLISLLLQRC 548 (837)
Q Consensus 533 ~i~~l~~L~~L~L~~~ 548 (837)
.+..++.+..+..++|
T Consensus 132 ~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 132 VIEVLTAEEELAASNN 147 (1081)
T ss_pred hHHhhhHHHHHhhhcc
Confidence 7766666666666554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=6.7e-13 Score=153.76 Aligned_cols=172 Identities=22% Similarity=0.286 Sum_probs=130.7
Q ss_pred ccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh
Q 038611 453 EHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532 (837)
Q Consensus 453 ~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 532 (837)
..+..+|.. .+..++.+++.+|.+..+|...+ ++|++|++++| .+..+|..+. ..|+.|+|++|.+..+|.
T Consensus 188 ~~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~ 258 (754)
T PRK15370 188 LGLTTIPAC--IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP---DTIQEMELSINRITELPE 258 (754)
T ss_pred CCcCcCCcc--cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh---ccccEEECcCCccCcCCh
Confidence 345566653 34579999999999999987653 58999999998 6888887653 479999999999999998
Q ss_pred hhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCc
Q 038611 533 SVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLC 611 (837)
Q Consensus 533 ~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~ 611 (837)
.+. .+|++|++++ +.++.+| .+. .+|++|++++|.+..+|..+. ++|++|++++|.+..+|... .++|+
T Consensus 259 ~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~ 328 (754)
T PRK15370 259 RLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL---PPGLK 328 (754)
T ss_pred hHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc---cccce
Confidence 765 5899999997 4677888 554 589999999999999987654 47999999999999888653 25788
Q ss_pred EEEccccchhhhhhHHHHhhhhhccCeeEEeeccccc
Q 038611 612 RLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 612 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
.|++ .++.... .+..+ +.+|+.|+++.|.+..
T Consensus 329 ~L~L-s~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 329 TLEA-GENALTS-LPASL---PPELQVLDVSKNQITV 360 (754)
T ss_pred eccc-cCCcccc-CChhh---cCcccEEECCCCCCCc
Confidence 8888 3333322 11112 2577888887776543
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=8.1e-13 Score=151.98 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=180.2
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccC
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQR 547 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 547 (837)
-..++++.+.++.+|..+. ++|+.|.+.+| .+..+|. .+++|++|+|++|.++.+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---cCCCEEEccCC-cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 4568889999999987653 47999999998 7888885 358899999999999999853 46899999998
Q ss_pred ccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHH
Q 038611 548 CRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVE 627 (837)
Q Consensus 548 ~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 627 (837)
| .++.+|. .+.+|+.|++++|.+..+|.. +++|+.|++++|.+..+|.. . .+|+.|++ .++...
T Consensus 272 N-~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-p---~~L~~L~L-s~N~L~----- 335 (788)
T PRK15387 272 N-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-P---SELCKLWA-YNNQLT----- 335 (788)
T ss_pred C-chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-c---cccccccc-ccCccc-----
Confidence 5 4777773 235788999999999999874 47899999999999988763 2 35677777 333332
Q ss_pred HHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCC
Q 038611 628 ETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDV 707 (837)
Q Consensus 628 ~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L 707 (837)
.+..+..+|+.|+++.|.+..+|.... +|..+. +++.. +..+ ...+.+|
T Consensus 336 ~LP~lp~~Lq~LdLS~N~Ls~LP~lp~-----~L~~L~-------------------Ls~N~-L~~L------P~l~~~L 384 (788)
T PRK15387 336 SLPTLPSGLQELSVSDNQLASLPTLPS-----ELYKLW-------------------AYNNR-LTSL------PALPSGL 384 (788)
T ss_pred cccccccccceEecCCCccCCCCCCCc-----ccceeh-------------------hhccc-cccC------ccccccc
Confidence 122232578999999998876554221 222221 11110 0011 1124678
Q ss_pred cEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccc
Q 038611 708 QCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDE 787 (837)
Q Consensus 708 ~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~ 787 (837)
+.|+++++. +..+|.. .. +|+.|+++++ .++.+|.. ..+|+.|+++++ .++.+|.
T Consensus 385 ~~LdLs~N~-Lt~LP~l------------~s-~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~N-qLt~LP~---- 439 (788)
T PRK15387 385 KELIVSGNR-LTSLPVL------------PS-ELKELMVSGN-RLTSLPML-----PSGLLSLSVYRN-QLTRLPE---- 439 (788)
T ss_pred ceEEecCCc-ccCCCCc------------cc-CCCEEEccCC-cCCCCCcc-----hhhhhhhhhccC-cccccCh----
Confidence 999997764 3333321 23 8999999996 57777542 247888999987 5777764
Q ss_pred hhhhhcccccccccccCCCcceEecccccc
Q 038611 788 ETEKELGTITIINILTLPRLKKLEFHYLPE 817 (837)
Q Consensus 788 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~ 817 (837)
.+..+++|+.|+|+++|-
T Consensus 440 ------------sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 440 ------------SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ------------HHhhccCCCeEECCCCCC
Confidence 456789999999999864
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.37 E-value=2.2e-13 Score=160.24 Aligned_cols=177 Identities=25% Similarity=0.296 Sum_probs=124.1
Q ss_pred cccEEEccccC--CCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 467 NLERVSLMMND--IDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 467 ~~~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
+++.+-+..|. +..++..+|..++.||+|++++|..+..+|..+ +++.+||||+|+++.+..+|.++.+|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 68888888886 777888888999999999999998999999987 999999999999999999999999999999999
Q ss_pred ccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEe---ccCCCCCCCCCCcccCCccCcEEEcccc--
Q 038611 545 LQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLY---LYSPPLKELPAGLLPRLRKLCRLSLYFG-- 618 (837)
Q Consensus 545 L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~---l~~~~l~~~p~~~l~~l~~L~~L~l~~~-- 618 (837)
+..+..+..+| ....|++|++|.+.......-...++.+.+|++|. ...... .+-.. +..++.|..+.....
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-LLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh-hhhhHHHHHHhHhhhhc
Confidence 99988888888 56669999999998765222122233444444444 332222 11111 233333332222111
Q ss_pred chhhhhhHHHHhhhhhccCeeEEeecccc
Q 038611 619 WEALEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 619 ~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
.......+..+..+ .+|+.|.+..+...
T Consensus 703 ~~~~~~~~~~~~~l-~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 703 GCSKRTLISSLGSL-GNLEELSILDCGIS 730 (889)
T ss_pred ccccceeecccccc-cCcceEEEEcCCCc
Confidence 11222234556667 77888888776553
No 23
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.27 E-value=1.8e-10 Score=128.65 Aligned_cols=287 Identities=18% Similarity=0.247 Sum_probs=186.1
Q ss_pred HHHHHHhcCC-CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccH
Q 038611 120 EIIWENLMGD-KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESLPENEDK 197 (837)
Q Consensus 120 ~~l~~~l~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~ 197 (837)
.++.+.|... +.+++.|..++|.|||||+.+..... ..-..+.|.+.++ +.++..+.+-++.+++.-.+...+.
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3455666554 78999999999999999999998732 3456799999875 4578888888888887544333322
Q ss_pred HH-------------HHHHHHHHHh-cCCeEEEEEeCCCCCc--cccc-cccCCCCCCCCcEEEEEeCChhHhhhCC--c
Q 038611 198 VS-------------RAGRLLGMLK-AKAKFVLILDDMWEAF--PLEK-VGIPEPNKENGCKLVITTRSYRVCRSMK--C 258 (837)
Q Consensus 198 ~~-------------~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~-l~~~~~~~~~~s~iivTtR~~~v~~~~~--~ 258 (837)
.. .+..+...+. -.++..+||||.+-.. .+.. +...+.....+-.+|||||+..-..... .
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 22 3333444332 2468899999987432 2222 2222223345778999999964322111 1
Q ss_pred ce--EEec----cCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHH
Q 038611 259 KQ--VEVE----LLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELR 332 (837)
Q Consensus 259 ~~--~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~ 332 (837)
.. ++++ .|+.+|+-++|....+... ....++.+.+..+|.+-|+..++=.++.+.+.+.--..+.
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls--- 251 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS--- 251 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---
Confidence 11 2332 4899999999987665542 2345889999999999999999988884433222111111
Q ss_pred hccccCCCCchhhhh-hhHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHHHHH
Q 038611 333 GRLRSLNDVDTKVFG-RLEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTILNR 411 (837)
Q Consensus 333 ~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~ 411 (837)
+....+.. ...--++.|| +++|..++-||+++.-. ..|+. .-..++.|..++++
T Consensus 252 -------G~~~~l~dYL~eeVld~Lp-~~l~~FLl~~svl~~f~----~eL~~-------------~Ltg~~ng~amLe~ 306 (894)
T COG2909 252 -------GAASHLSDYLVEEVLDRLP-PELRDFLLQTSVLSRFN----DELCN-------------ALTGEENGQAMLEE 306 (894)
T ss_pred -------chHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHHHhh----HHHHH-------------HHhcCCcHHHHHHH
Confidence 11111111 1223468899 89999999999875431 12221 22334567778999
Q ss_pred HHhhcccccc--cccceeeehhHHHHHHHHHHhhc
Q 038611 412 LVNCCLLESA--RYGRCVKMHDLIRDMALHIISKS 444 (837)
Q Consensus 412 L~~~~ll~~~--~~~~~~~mHdlv~d~a~~~~~~~ 444 (837)
|.+++|+-.. +++..|+.|.++.||.+.....+
T Consensus 307 L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 307 LERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9999988743 44578999999999998877653
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=6.8e-13 Score=134.19 Aligned_cols=121 Identities=28% Similarity=0.450 Sum_probs=63.7
Q ss_pred EEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-ChhhhcccccceecccCccccCCCc--cccccCCCCEEeccC
Q 038611 494 TLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRG 570 (837)
Q Consensus 494 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~ 570 (837)
.+.|..| .+..||+..|+.+++||+||||.|.|+.+ |..+..+..|-.|-+-+++.++.+| .+++|..|+-|.+.-
T Consensus 71 eirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 71 EIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3444444 45555555555555555555555555543 4455555555555444445555555 255555555555555
Q ss_pred CcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 571 TSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 571 ~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
|.+.-++. .+..|++|..|.+..|.+..++.+.+..+..++++.+
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 55544433 3455555555555555555555544555555555544
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=3.7e-09 Score=110.43 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=114.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHH---
Q 038611 128 GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRL--- 204 (837)
Q Consensus 128 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l--- 204 (837)
....+++.|+|++|+||||+++.+++... . ... .++|+ +....+..+++..|+..++.+... .........+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~ 114 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDF 114 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHH
Confidence 34467899999999999999999998762 1 111 22333 333457778899999998775432 2222222222
Q ss_pred -HHHHhcCCeEEEEEeCCCCCc--cccccccC--C-CCCCCCcEEEEEeCChhHhhhC----------C-cceEEeccCC
Q 038611 205 -LGMLKAKAKFVLILDDMWEAF--PLEKVGIP--E-PNKENGCKLVITTRSYRVCRSM----------K-CKQVEVELLS 267 (837)
Q Consensus 205 -~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~--~-~~~~~~s~iivTtR~~~v~~~~----------~-~~~~~l~~L~ 267 (837)
......+++.+||+||+|... .++.+... . ........|++|.... ..... . ...+.+.+++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 223346788999999998753 33333211 1 1112233456665442 21111 1 1127899999
Q ss_pred HHhHHHHHHHHhCCCCC-CCchhhHHHHHHHHHHhCCchhHHHHHHHhc
Q 038611 268 KEEAFNLFIDRVGSSIL-QVPTLNREIINSIVEECGCLPLAIVTVAASM 315 (837)
Q Consensus 268 ~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 315 (837)
.++..+++...+..... .......+..+.|++.|+|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999876643211 1112246889999999999999999988765
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=9.9e-12 Score=125.91 Aligned_cols=197 Identities=22% Similarity=0.241 Sum_probs=135.7
Q ss_pred EEeccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecC-CC
Q 038611 448 MVKAREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSF-TA 526 (837)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~ 526 (837)
+.-.+..+.++|.+ .+.....+.+..|.|..+|+..|..+++||.|+|++| .+..|.+..|.+++.|..|-+.+ |.
T Consensus 51 VdCr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence 34455667777764 4567888999999999999999999999999999998 78888888888888887776666 77
Q ss_pred CcccCh-hhhcccccceecccCc-----------------------cccCCCc--cccccCCCCEEeccCCc------Cc
Q 038611 527 IEVLPN-SVSDLMNLISLLLQRC-----------------------RRLKRVP--SVAKLLALQHLDLRGTS------IE 574 (837)
Q Consensus 527 i~~lp~-~i~~l~~L~~L~L~~~-----------------------~~l~~lp--~~~~l~~L~~L~l~~~~------i~ 574 (837)
|..+|+ .++.|..|+.|.+.-| +.+..++ ++..+..++++.+..|. +.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 888874 3455555555555432 2233333 34455555555543332 00
Q ss_pred ------------------------------------------cc--------------c-ccccCCCCCCEEeccCCCCC
Q 038611 575 ------------------------------------------EV--------------P-EGMQMLENLSHLYLYSPPLK 597 (837)
Q Consensus 575 ------------------------------------------~l--------------p-~~~~~l~~L~~L~l~~~~l~ 597 (837)
++ | .-|..|++|++|++++|.++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 00 1 01345788888888888888
Q ss_pred CCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 598 ELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 598 ~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
.+..+.|..+..+++|.+ ..+......-..+.++ ..|+.|++..|.++.+
T Consensus 288 ~i~~~aFe~~a~l~eL~L-~~N~l~~v~~~~f~~l-s~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYL-TRNKLEFVSSGMFQGL-SGLKTLSLYDNQITTV 337 (498)
T ss_pred hhhhhhhcchhhhhhhhc-CcchHHHHHHHhhhcc-ccceeeeecCCeeEEE
Confidence 887777888888888888 4444444455667778 8888888888877654
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=1.6e-08 Score=111.93 Aligned_cols=294 Identities=16% Similarity=0.134 Sum_probs=164.6
Q ss_pred CCccccccchhHHHHHHHHHh----cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENL----MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
.+..++|| ++++++|...+ .+.....+.|+|++|+|||++++.++++... ....-.++++++....+...++.
T Consensus 28 ~P~~l~~R--e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHR--EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCH--HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHH
Confidence 34578999 66777776665 3345677899999999999999999998733 22234567777777778888999
Q ss_pred HHHHHhcC-CCCC-CccHHHHHHHHHHHHh-cCCeEEEEEeCCCCCc------cccccccCCCCCCCC--cEEEEEeCCh
Q 038611 182 EIATALKE-SLPE-NEDKVSRAGRLLGMLK-AKAKFVLILDDMWEAF------PLEKVGIPEPNKENG--CKLVITTRSY 250 (837)
Q Consensus 182 ~i~~~l~~-~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~~--s~iivTtR~~ 250 (837)
.|+.++.. ..+. ..........+.+.+. .+++.+||||+++.-. .+..+...... ..+ ..||.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 99999875 2221 2233344445555543 3467899999998632 12222211111 122 2356666654
Q ss_pred hHhh--------hCCcceEEeccCCHHhHHHHHHHHhCCC---CCCCchhhHHHHHHHHHHhCCchhHHHHHHHhc--c-
Q 038611 251 RVCR--------SMKCKQVEVELLSKEEAFNLFIDRVGSS---ILQVPTLNREIINSIVEECGCLPLAIVTVAASM--S- 316 (837)
Q Consensus 251 ~v~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l--~- 316 (837)
.+.. ......+.+.+++.++..+++...+... ..-.+..++.+++......|..+.|+.++-.+. .
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4322 2222238999999999999998876322 111111123333333333455777777664332 1
Q ss_pred --CCc--CHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhcc-CCC-CcccCHHHHHHH--HHH
Q 038611 317 --GEE--EIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCAL-YPK-NFLILKDELIDY--WIA 388 (837)
Q Consensus 317 --~~~--~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~-fp~-~~~i~~~~li~~--w~a 388 (837)
+.. +......+.+.+. .....-.+..|| .+.|..+..++. ... ...+...++... .++
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLP-LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 111 3455555555431 122344678888 554444433332 211 123444444432 222
Q ss_pred hCCCccchhHHHHHHhHHHHHHHHHhhcccccc
Q 038611 389 EGVIEELKDVQAKYDRGHTILNRLVNCCLLESA 421 (837)
Q Consensus 389 eg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 421 (837)
+.+-.. .........+++.|.+.+++...
T Consensus 330 ~~~~~~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 330 EELGYE----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHcCCC----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 221110 00123456689999999999864
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=8e-08 Score=105.22 Aligned_cols=295 Identities=15% Similarity=0.152 Sum_probs=166.3
Q ss_pred CccccccchhHHHHHHHHHhc----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC---CeEEEEEeCCCcCHHHH
Q 038611 107 TETLVGEKTKKVVEIIWENLM----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~~~~~~~~ 179 (837)
+..++|| ++++++|..++. +.....+.|+|++|+|||++++.+++......... -..+|+++....+...+
T Consensus 14 p~~l~gR--e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHR--DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCc--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 3478999 677777777764 34567899999999999999999999863322211 24677887777778889
Q ss_pred HHHHHHHh---cCCCCCC-ccHHHHHHHHHHHHh-cCCeEEEEEeCCCCCc-c----ccccccCC-CCC--CCCcEEEEE
Q 038611 180 QTEIATAL---KESLPEN-EDKVSRAGRLLGMLK-AKAKFVLILDDMWEAF-P----LEKVGIPE-PNK--ENGCKLVIT 246 (837)
Q Consensus 180 ~~~i~~~l---~~~~~~~-~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~----~~~l~~~~-~~~--~~~s~iivT 246 (837)
+..|+.++ +...+.. .+..+....+.+.+. .+++++||||+++.-. . +..+.... ... +....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99999998 3332221 223333444555443 3568899999998651 1 11211110 111 123345555
Q ss_pred eCChhHh--------hhCCcceEEeccCCHHhHHHHHHHHhCCC--CCCCchhhHHHHHHHHHHhCCchhHHHHHH-Hhc
Q 038611 247 TRSYRVC--------RSMKCKQVEVELLSKEEAFNLFIDRVGSS--ILQVPTLNREIINSIVEECGCLPLAIVTVA-ASM 315 (837)
Q Consensus 247 tR~~~v~--------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~GlPLai~~~~-~~l 315 (837)
|...... .......+.+.+.+.++..+++...+... ...-.+...+.+..++..+.|.|-.+..+. .+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5443321 11211238899999999999998876421 111111133455667777789885543332 211
Q ss_pred ----c-CC--cCHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccC--CCCcccCHHHHHHHH
Q 038611 316 ----S-GE--EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALY--PKNFLILKDELIDYW 386 (837)
Q Consensus 316 ----~-~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~w 386 (837)
. +. -+.+..+.+.+.+. .....-++..|| .+.+..+..++.. ..+..+...++...+
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~-~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLP-THSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 11 12344444444331 122334567887 5655444444321 133345566666533
Q ss_pred H--HhCCCccchhHHHHHHhHHHHHHHHHhhcccccc
Q 038611 387 I--AEGVIEELKDVQAKYDRGHTILNRLVNCCLLESA 421 (837)
Q Consensus 387 ~--aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 421 (837)
- ++.+ .. .........+++..|...|++...
T Consensus 318 ~~~~~~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 318 KEVCEDI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHhc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 2211 10 012235667788999999999864
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=1.8e-10 Score=123.95 Aligned_cols=155 Identities=23% Similarity=0.206 Sum_probs=85.3
Q ss_pred CCCCcccEEEccCCcCc-----cccChhHhhcCCCCcEEEecCCCCcc-------cChhhhcccccceecccCccccCCC
Q 038611 487 PHCEILSTLLLQRNINL-----QWIPECFFAHMHGLKILNLSFTAIEV-------LPNSVSDLMNLISLLLQRCRRLKRV 554 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~~l~~l 554 (837)
..+++|+.|.+.++. + ..++.. +...+.|+.|+++++.+.. ++..+..+++|++|++++|......
T Consensus 20 ~~l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 445667777777763 3 123322 3556667777777766542 2344556667777777776544333
Q ss_pred c-cccccCC---CCEEeccCCcCcc-----ccccccCC-CCCCEEeccCCCCCC-----CCCCcccCCccCcEEEccccc
Q 038611 555 P-SVAKLLA---LQHLDLRGTSIEE-----VPEGMQML-ENLSHLYLYSPPLKE-----LPAGLLPRLRKLCRLSLYFGW 619 (837)
Q Consensus 555 p-~~~~l~~---L~~L~l~~~~i~~-----lp~~~~~l-~~L~~L~l~~~~l~~-----~p~~~l~~l~~L~~L~l~~~~ 619 (837)
+ .+..+.. |++|++++|.+.. +...+..+ ++|+.|++++|.+.. ++.. +..+++|++|++ ..+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l-~~n 175 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNL-ANN 175 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEEC-cCC
Confidence 3 3444433 7777777775542 23344555 677777777776552 2212 455566777777 333
Q ss_pred hhhhhhH----HHHhhhhhccCeeEEeeccc
Q 038611 620 EALEETV----EETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 620 ~~~~~~~----~~l~~l~~~L~~L~l~~~~~ 646 (837)
......+ ..+... .+|+.|+++.|.+
T Consensus 176 ~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i 205 (319)
T cd00116 176 GIGDAGIRALAEGLKAN-CNLEVLDLNNNGL 205 (319)
T ss_pred CCchHHHHHHHHHHHhC-CCCCEEeccCCcc
Confidence 3332222 223333 4667666666554
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.07 E-value=4.2e-10 Score=114.98 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=104.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHH---------
Q 038611 110 LVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ--------- 180 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~--------- 180 (837)
|+|| +++++.|.+++..+..+.+.|+|+.|+|||+|++++.+.. ... .+ .++|+............
T Consensus 1 F~gR--~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGR--EKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-KEK-GY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S---HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-hhc-CC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 6899 8899999999988778999999999999999999999875 111 11 34455443333221111
Q ss_pred HHHHHHhcCCCC----------CCccHHHHHHHHHHHHhc-CCeEEEEEeCCCCCc-ccc----------ccccCCCCCC
Q 038611 181 TEIATALKESLP----------ENEDKVSRAGRLLGMLKA-KAKFVLILDDMWEAF-PLE----------KVGIPEPNKE 238 (837)
Q Consensus 181 ~~i~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~----------~l~~~~~~~~ 238 (837)
..+...+....+ ...........+.+.+.+ +++.+||+||+.... ... .+...... .
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 154 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-Q 154 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-c
Confidence 112222221111 112223444555555543 346999999997655 111 11111112 2
Q ss_pred CCcEEEEEeCChhHhhh--------CCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 239 NGCKLVITTRSYRVCRS--------MKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 239 ~~s~iivTtR~~~v~~~--------~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
....+|+++....+... .+... +.+++|+.+++++++...+... ..- +.-.+...+|+..+||+|..|.
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 33445555555554433 11112 8999999999999999876443 110 1135567999999999999886
Q ss_pred H
Q 038611 310 T 310 (837)
Q Consensus 310 ~ 310 (837)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=1.2e-10 Score=125.23 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=62.6
Q ss_pred hhcCCCCcEEEecCCCCc-----ccChhhhcccccceecccCcccc------CCCc-cccccCCCCEEeccCCcCc-ccc
Q 038611 511 FAHMHGLKILNLSFTAIE-----VLPNSVSDLMNLISLLLQRCRRL------KRVP-SVAKLLALQHLDLRGTSIE-EVP 577 (837)
Q Consensus 511 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l------~~lp-~~~~l~~L~~L~l~~~~i~-~lp 577 (837)
|..+..|++|+++++.+. .++..+...++|++|+++++..- ..++ .+..+++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 345555666666666542 23444445555666666554321 1112 2445556666666666443 223
Q ss_pred ccccCCCC---CCEEeccCCCCCC-----CCCCcccCC-ccCcEEEccccchhhh----hhHHHHhhhhhccCeeEEeec
Q 038611 578 EGMQMLEN---LSHLYLYSPPLKE-----LPAGLLPRL-RKLCRLSLYFGWEALE----ETVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 578 ~~~~~l~~---L~~L~l~~~~l~~-----~p~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~l~~l~~~L~~L~l~~~ 644 (837)
..+..+.+ |++|++++|.+.. +... +..+ ++|+.|++.. +.... .....+..+ .+|+.|+++.|
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~-~~L~~L~l~~n 175 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGR-NRLEGASCEALAKALRAN-RDLKELNLANN 175 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCC-CcCCchHHHHHHHHHHhC-CCcCEEECcCC
Confidence 33333332 6666666655442 1111 3344 5566666622 22221 122334444 45666666655
Q ss_pred ccc
Q 038611 645 KLN 647 (837)
Q Consensus 645 ~~~ 647 (837)
.+.
T Consensus 176 ~l~ 178 (319)
T cd00116 176 GIG 178 (319)
T ss_pred CCc
Confidence 544
No 32
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=1.3e-09 Score=104.67 Aligned_cols=143 Identities=24% Similarity=0.297 Sum_probs=90.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcC-C--CCeEEEEEeCCCcCHH---HHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETN-K--FNVVIWVTVSQPLDLI---KLQTEIATALKESLPENEDKVSRAGRLL 205 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~--f~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 205 (837)
+++.|+|.+|+||||+++.++........ . +...+|++.++..... .+...|..+...... .... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 58999999999999999999988743221 1 4567788766544322 344444444332211 1111 222
Q ss_pred HHHhcCCeEEEEEeCCCCCcc---------cccccc-CCC-CCCCCcEEEEEeCChhH---hhhCCcce-EEeccCCHHh
Q 038611 206 GMLKAKAKFVLILDDMWEAFP---------LEKVGI-PEP-NKENGCKLVITTRSYRV---CRSMKCKQ-VEVELLSKEE 270 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~~~~~---------~~~l~~-~~~-~~~~~s~iivTtR~~~v---~~~~~~~~-~~l~~L~~~~ 270 (837)
..+...++++||||++++... +..+.. .+. ....+++|+||+|.... ........ +.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 233367899999999986532 111111 111 12568899999999766 33333333 8999999999
Q ss_pred HHHHHHHHhC
Q 038611 271 AFNLFIDRVG 280 (837)
Q Consensus 271 ~~~Lf~~~~~ 280 (837)
..+++.+.+.
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=1.7e-08 Score=107.51 Aligned_cols=273 Identities=15% Similarity=0.104 Sum_probs=143.1
Q ss_pred cccccchhHHHHHHHHHhc-----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLM-----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
+++|+ ++.++.|..++. ......+.++|++|+|||+||+.+++... ..+ ..+..+....... +...
T Consensus 5 ~~iG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 5 EFIGQ--EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPGD-LAAI 75 (305)
T ss_pred HHcCH--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCchh-HHHH
Confidence 68998 666777766664 23466788999999999999999998762 111 2222211111112 2222
Q ss_pred HHHhcCCC----CCCccH-HHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhhhC--
Q 038611 184 ATALKESL----PENEDK-VSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSM-- 256 (837)
Q Consensus 184 ~~~l~~~~----~~~~~~-~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~-- 256 (837)
+..++... +..... ......+ ..+..+.+..+|+++..+...+.. +. .+.+-|..||+...+....
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l-~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELL-YPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHh-hHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHh
Confidence 23332211 000000 0111222 222244556667776655544432 12 2245566777765443221
Q ss_pred Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHHhcc
Q 038611 257 KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRL 335 (837)
Q Consensus 257 ~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 335 (837)
.... +.+++++.++..+++.+.++.....- ..+....|++.|+|.|-.+..++..+ |..+. ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 1223 79999999999999998876442222 35677899999999997765554432 11100 000000
Q ss_pred ccCCCCchhhhhhhHhhhhcCCchhhHHHHh-hhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHHHH-HHH
Q 038611 336 RSLNDVDTKVFGRLEFSYHRLKDEKLRQCFL-YCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTILN-RLV 413 (837)
Q Consensus 336 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~-~L~ 413 (837)
.. .+.-......+...|..++ ++.+..+. ..+.++.+ .+.... +|.-+ ......+...++ .|+
T Consensus 217 it-~~~v~~~l~~l~~~~~~l~-~~~~~~L~al~~~~~~~-~~~~~~-----ia~~l-------g~~~~~~~~~~e~~Li 281 (305)
T TIGR00635 217 IN-RDIALKALEMLMIDELGLD-EIDRKLLSVLIEQFQGG-PVGLKT-----LAAAL-------GEDADTIEDVYEPYLL 281 (305)
T ss_pred cC-HHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCC-cccHHH-----HHHHh-------CCCcchHHHhhhHHHH
Confidence 00 0000122222456677887 56666555 44555443 233222 22111 011234566678 699
Q ss_pred hhccccccccc
Q 038611 414 NCCLLESARYG 424 (837)
Q Consensus 414 ~~~ll~~~~~~ 424 (837)
+++|++....+
T Consensus 282 ~~~li~~~~~g 292 (305)
T TIGR00635 282 QIGFLQRTPRG 292 (305)
T ss_pred HcCCcccCCch
Confidence 99999865444
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=9.2e-08 Score=102.43 Aligned_cols=275 Identities=15% Similarity=0.132 Sum_probs=141.9
Q ss_pred ccccccchhHHHHHHHHHhc-----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLM-----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
..++|+ ++.++.+..++. +.....+.|+|++|+||||+|+.+++... .. ..++..+. ......+..
T Consensus 25 ~~~vG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~---~~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQ--EKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VN---IRITSGPA-LEKPGDLAA 95 (328)
T ss_pred HHhcCc--HHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CC---eEEEeccc-ccChHHHHH
Confidence 389999 556665655443 23467889999999999999999999862 11 12222221 111122223
Q ss_pred HHHHhcCCC----CCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhhhC--
Q 038611 183 IATALKESL----PENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSM-- 256 (837)
Q Consensus 183 i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~-- 256 (837)
++..+.... +............+.....+.+..+|+|+..+...+.. .+ .+.+-|..|++...+....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHHH
Confidence 333332110 00000000111112222234455556665544332221 11 1235566677754432221
Q ss_pred Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHHhcc
Q 038611 257 KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRL 335 (837)
Q Consensus 257 ~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 335 (837)
.... +.+++++.++..+++.+.++.....- -.+.+..|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 1122 89999999999999998876553333 456789999999999965555544321 121100 0000
Q ss_pred ccCCCCchhhhhhhHhhhhcCCchhhHHHHh-hhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHHHH-HHH
Q 038611 336 RSLNDVDTKVFGRLEFSYHRLKDEKLRQCFL-YCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTILN-RLV 413 (837)
Q Consensus 336 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~-~L~ 413 (837)
.. ...-......+...|..|+ +..+..+. ....|+.+ .+..+.+ |.- +. ...+.+++.++ .|+
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~-~~~~~~l~~~~~~~~~~-~~~~~~~-----a~~-lg------~~~~~~~~~~e~~Li 302 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLD-EMDRKYLRTIIEKFGGG-PVGLDTL-----AAA-LG------EERDTIEDVYEPYLI 302 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCC-HHHHHHHHHHHHHcCCC-ceeHHHH-----HHH-HC------CCcchHHHHhhHHHH
Confidence 00 0011233344566677787 55666664 55666655 2433332 111 11 11234455566 799
Q ss_pred hhccccccccc
Q 038611 414 NCCLLESARYG 424 (837)
Q Consensus 414 ~~~ll~~~~~~ 424 (837)
+.+|++....+
T Consensus 303 ~~~li~~~~~g 313 (328)
T PRK00080 303 QQGFIQRTPRG 313 (328)
T ss_pred HcCCcccCCch
Confidence 99999865443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=1.1e-10 Score=123.85 Aligned_cols=182 Identities=25% Similarity=0.361 Sum_probs=128.1
Q ss_pred cccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh
Q 038611 454 HLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS 533 (837)
Q Consensus 454 ~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 533 (837)
.+.++|.+......++.+.+..|.+..+|... ..+..|..|+++.| .+..+|..+ ..++ |++|-+++|++..+|..
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~N-qlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSN-QLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEE 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccc-hhhcCChhh-hcCc-ceeEEEecCccccCCcc
Confidence 34455655444455666677777777776543 56777777888877 666677765 3333 88888888888888888
Q ss_pred hhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcE
Q 038611 534 VSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCR 612 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~ 612 (837)
++.+.+|..|+.+.| .+..+| .++++.+|+.|.++.|.+..+|+.+..|+ |..||++.|++..+|.. |.+|+.||+
T Consensus 162 ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~-fr~m~~Lq~ 238 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVD-FRKMRHLQV 238 (722)
T ss_pred cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchh-hhhhhhhee
Confidence 887788888888874 456666 68888888888888888888888887655 88888888888888877 788888888
Q ss_pred EEccccchh--hhhhHHHHhhhhhccCeeEEeec
Q 038611 613 LSLYFGWEA--LEETVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 613 L~l~~~~~~--~~~~~~~l~~l~~~L~~L~l~~~ 644 (837)
|.| .++.. ....+...+.. .=.++|++.-|
T Consensus 239 l~L-enNPLqSPPAqIC~kGkV-HIFKyL~~qA~ 270 (722)
T KOG0532|consen 239 LQL-ENNPLQSPPAQICEKGKV-HIFKYLSTQAC 270 (722)
T ss_pred eee-ccCCCCCChHHHHhccce-eeeeeecchhc
Confidence 888 44432 23334444444 44566666554
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=3.6e-08 Score=117.15 Aligned_cols=310 Identities=16% Similarity=0.181 Sum_probs=176.1
Q ss_pred cccccchhHHHHHHHHHhc---CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc---CHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLM---GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL---DLIKLQTE 182 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~---~~~~~~~~ 182 (837)
+++|| +.+++.|...+. .+...|+.+.|..|||||+|+++|.....+.+..|-...+-....+. .+.+..++
T Consensus 1 ~l~GR--e~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGR--ETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCch--HhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 36899 567777776664 45678999999999999999999998874432322211111111111 12223333
Q ss_pred HHHHh-------------------cCCCCC----------------------CccHHH-----HHHHHHHHHhcCCeEEE
Q 038611 183 IATAL-------------------KESLPE----------------------NEDKVS-----RAGRLLGMLKAKAKFVL 216 (837)
Q Consensus 183 i~~~l-------------------~~~~~~----------------------~~~~~~-----~~~~l~~~l~~~k~~Ll 216 (837)
++.++ +..... ...... ....+.....+.++.+|
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33332 211000 000000 11112222235679999
Q ss_pred EEeCCC-CC-ccccc---cccCCC-CC--CCCcEEEEEeCCh--hHhhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCC
Q 038611 217 ILDDMW-EA-FPLEK---VGIPEP-NK--ENGCKLVITTRSY--RVCRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQ 285 (837)
Q Consensus 217 VlDdv~-~~-~~~~~---l~~~~~-~~--~~~s~iivTtR~~--~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~ 285 (837)
|+||++ -+ ..+.- +..... .. ....-.+.|.+.. .+-....... +.|.||+..+...+.....+.....
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 999994 22 22211 111110 00 0111222333332 1112222223 9999999999999999988774111
Q ss_pred CchhhHHHHHHHHHHhCCchhHHHHHHHhccCC------cCHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCch
Q 038611 286 VPTLNREIINSIVEECGCLPLAIVTVAASMSGE------EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDE 359 (837)
Q Consensus 286 ~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 359 (837)
..+....|+++..|+|+.+..+-..+..+ .+...|..-..++.. ....+++...+..-.+.|| .
T Consensus 239 ----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~-~ 308 (849)
T COG3899 239 ----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLP-G 308 (849)
T ss_pred ----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCC-H
Confidence 45678999999999999999999888763 344555543333221 1222346667888999999 7
Q ss_pred hhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHHHHHHHhhccccccc-----c-c--c-eeeeh
Q 038611 360 KLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTILNRLVNCCLLESAR-----Y-G--R-CVKMH 430 (837)
Q Consensus 360 ~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-----~-~--~-~~~mH 430 (837)
..|..+...|++...|. .+.|-..|.. ....++...++.|....++-..+ . . . +-..|
T Consensus 309 ~t~~Vl~~AA~iG~~F~--l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNRFD--LDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCccCC--HHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 89999999999987765 3333333311 22345555666666655554221 1 1 1 23679
Q ss_pred hHHHHHHHHHHhh
Q 038611 431 DLIRDMALHIISK 443 (837)
Q Consensus 431 dlv~d~a~~~~~~ 443 (837)
|+|++.|-....+
T Consensus 376 ~~vqqaaY~~i~~ 388 (849)
T COG3899 376 DRVQQAAYNLIPE 388 (849)
T ss_pred HHHHHHHhccCch
Confidence 9999988665543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=6.4e-11 Score=125.47 Aligned_cols=199 Identities=24% Similarity=0.331 Sum_probs=161.3
Q ss_pred cccccCCCchhh--hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc
Q 038611 452 REHLLEFPGEQE--WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV 529 (837)
Q Consensus 452 ~~~~~~~p~~~~--~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 529 (837)
+..++++|.... -.......+++.|.+.++|..+ ..|..|..+.+..| .+..+|..+ .++..|.+|||+.|.++.
T Consensus 59 ~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n-~~r~ip~~i-~~L~~lt~l~ls~NqlS~ 135 (722)
T KOG0532|consen 59 GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHN-CIRTIPEAI-CNLEALTFLDLSSNQLSH 135 (722)
T ss_pred cchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhc-cceecchhh-hhhhHHHHhhhccchhhc
Confidence 344455554311 1234556788999999998764 67788999999988 688889876 899999999999999999
Q ss_pred cChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCc
Q 038611 530 LPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLR 608 (837)
Q Consensus 530 lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~ 608 (837)
+|..++.|+ |+.|.+++ ++++.+| .++.+.+|..||.+.|.+..+|..++.+.+|+.|++..|++..+|.+ +..|
T Consensus 136 lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L- 211 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL- 211 (722)
T ss_pred CChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-
Confidence 999999887 89999998 6789999 89999999999999999999999999999999999999999999988 5544
Q ss_pred cCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCc
Q 038611 609 KLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRE 660 (837)
Q Consensus 609 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (837)
.|..|++ +|++.. ..+-.+.+| ++|++|-+.+|.+..-|..+......+
T Consensus 212 pLi~lDf-ScNkis-~iPv~fr~m-~~Lq~l~LenNPLqSPPAqIC~kGkVH 260 (722)
T KOG0532|consen 212 PLIRLDF-SCNKIS-YLPVDFRKM-RHLQVLQLENNPLQSPPAQICEKGKVH 260 (722)
T ss_pred ceeeeec-ccCcee-ecchhhhhh-hhheeeeeccCCCCCChHHHHhcccee
Confidence 4778887 655544 345678899 999999999998877666665544433
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.8e-08 Score=103.65 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=109.3
Q ss_pred cccccch-hHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 109 TLVGEKT-KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 109 ~~vGr~~-~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
++||.++ -.+-.-|...+..+.+.-..+||++|+||||||+.++... ... |..++...+-.+-++++++.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~-----f~~~sAv~~gvkdlr~i~e~- 95 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAA-----FEALSAVTSGVKDLREIIEE- 95 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCc-----eEEeccccccHHHHHHHHHH-
Confidence 6777633 0112345566777888888999999999999999999865 222 33344433322222233221
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE--EeCChhH----hhhCCcc
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI--TTRSYRV----CRSMKCK 259 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv--TtR~~~v----~~~~~~~ 259 (837)
-.+....+++.+|++|.|+.- .+-+.+.. ....|..|+| ||-++.. |-...+.
T Consensus 96 ----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 96 ----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred ----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 112233589999999999864 33333332 3366777776 7777654 3333444
Q ss_pred eEEeccCCHHhHHHHHHHHhCCC--CCC--CchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 260 QVEVELLSKEEAFNLFIDRVGSS--ILQ--VPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 260 ~~~l~~L~~~~~~~Lf~~~~~~~--~~~--~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
.+.+++|+.++...++.+.+-.. .-+ ....-++....|+..++|.--++....
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 59999999999999999854322 111 111135577888999999876554443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=4e-09 Score=99.76 Aligned_cols=127 Identities=28% Similarity=0.328 Sum_probs=40.2
Q ss_pred cCCCCcEEEecCCCCcccChhhh-cccccceecccCccccCCCccccccCCCCEEeccCCcCccccccc-cCCCCCCEEe
Q 038611 513 HMHGLKILNLSFTAIEVLPNSVS-DLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLY 590 (837)
Q Consensus 513 ~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~ 590 (837)
+...++.|+|.+|.|+.+. .++ .+.+|+.|+|++ +.++.++.+..+++|++|++++|.|++++.++ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4445666666666666553 344 456666666666 34555655666677777777777777665554 3567777777
Q ss_pred ccCCCCCCCCC-CcccCCccCcEEEccccc--hhhhhhHHHHhhhhhccCeeEEe
Q 038611 591 LYSPPLKELPA-GLLPRLRKLCRLSLYFGW--EALEETVEETGRLSDRLDTFEGH 642 (837)
Q Consensus 591 l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~l~~~L~~L~l~ 642 (837)
+++|.+..+.. ..+..+++|+.|++..+. .....-.-.+..+ ++|+.|+..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCE
Confidence 77776655432 125566777777773321 1122223445566 777777654
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=3.5e-08 Score=99.49 Aligned_cols=173 Identities=14% Similarity=0.212 Sum_probs=102.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
.++|.+.......+.........+.+.|+|++|+|||+||+++++..... ...+.|+++..... ..
T Consensus 17 ~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~~---~~-------- 82 (229)
T PRK06893 17 NFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQY---FS-------- 82 (229)
T ss_pred ccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhhh---hh--------
Confidence 56644322222333333333344678999999999999999999986322 23457776532100 00
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC---ccccc-cccCCCC-CCCCcEEEE-EeCC---------hhHh
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA---FPLEK-VGIPEPN-KENGCKLVI-TTRS---------YRVC 253 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~~s~iiv-TtR~---------~~v~ 253 (837)
..+.+.+ .+.-+|||||+|.. ..|+. +...+.. ...|..+|| |+.. +.+.
T Consensus 83 -------------~~~~~~~--~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~ 147 (229)
T PRK06893 83 -------------PAVLENL--EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLA 147 (229)
T ss_pred -------------HHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHH
Confidence 0112222 13358999999863 33442 2211211 123555554 4444 3555
Q ss_pred hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 254 RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 254 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
..+.... +++++++.++.++++++.+......- -+++...|++++.|..-++..+-.
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 6655555 89999999999999998876442222 467888999999887766655443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=6.4e-10 Score=108.70 Aligned_cols=131 Identities=25% Similarity=0.322 Sum_probs=105.8
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
+.++.+++++|.+..+..+. .-.|.+|.|+++.| .+..+.. +..+.+|..||||+|.+.++-..-.+|-|.++|.|
T Consensus 284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhh-hhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 46788899999888876554 45688999999988 6666655 57888999999999988877766667888889999
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCcccc--ccccCCCCCCEEeccCCCCCCCCC
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEVP--EGMQMLENLSHLYLYSPPLKELPA 601 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~ 601 (837)
+. +.++.+..+++|.+|.+||+++|+|+.+. .+|++||+|+++.+.+|++..+|.
T Consensus 360 a~-N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQ-NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 88 56777777889999999999999888765 478899999999998888776654
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.7e-08 Score=95.55 Aligned_cols=100 Identities=27% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cc-cccCCCCEEeccCCcCcccc--ccccCCCCCCEE
Q 038611 514 MHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SV-AKLLALQHLDLRGTSIEEVP--EGMQMLENLSHL 589 (837)
Q Consensus 514 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~-~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L 589 (837)
+.+|+.|+|++|.|..++ .+..+++|++|++++ +.++.++ .+ ..+++|++|++++|.|..+- ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 344444444444444443 244444444444444 2333333 22 23444555555554443322 123445555555
Q ss_pred eccCCCCCCCCC---CcccCCccCcEEEc
Q 038611 590 YLYSPPLKELPA---GLLPRLRKLCRLSL 615 (837)
Q Consensus 590 ~l~~~~l~~~p~---~~l~~l~~L~~L~l 615 (837)
++.+|++...+. -++..+++|+.|+-
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eccCCcccchhhHHHHHHHHcChhheeCC
Confidence 555555443321 12445555555543
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.63 E-value=3e-07 Score=93.24 Aligned_cols=173 Identities=14% Similarity=0.185 Sum_probs=103.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
.+++...+..++.+..++.......+.|+|.+|+|||+||+.+++.... .....++++++.-.+ ..
T Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred CcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHH------hH-----
Confidence 4443222556777777766666789999999999999999999987622 233456665443211 00
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---ccc-ccccCCCC-CCCCcEEEEEeCChh---------Hhh
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---PLE-KVGIPEPN-KENGCKLVITTRSYR---------VCR 254 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~-~l~~~~~~-~~~~s~iivTtR~~~---------v~~ 254 (837)
..+...+ . +.-+|||||++... .|. .+...+.. ...+..+|+||+... +..
T Consensus 82 -------------~~~~~~~-~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------------PEVLEGL-E-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------------HHHHhhc-c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 0111112 2 22389999998543 222 22221111 123347888887532 222
Q ss_pred hCC-cceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 255 SMK-CKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 255 ~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
... ...+++.+++.++...++...+......- -.+....|++.+.|.|..+.-+..
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 332 22389999999999999887543221122 355678888888888877766543
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.62 E-value=5e-07 Score=99.81 Aligned_cols=176 Identities=16% Similarity=0.186 Sum_probs=103.8
Q ss_pred cccccchhHHHHH---HHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEI---IWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~vGr~~~~~~~~---l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.+||+ +..+.. +..++..+..+.+.|+|++|+||||+|+.+++.. ... |+.++....-..-.+++++
T Consensus 13 d~vGq--~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 13 EVVGQ--EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HhcCc--HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----EEEEecccccHHHHHHHHH
Confidence 78888 444433 7777777788889999999999999999999875 222 2222221111111122221
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEE--EeCChhHh----hhCC
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVI--TTRSYRVC----RSMK 257 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iiv--TtR~~~v~----~~~~ 257 (837)
.. ......+++.+|++|+++... +.+.+...+ ..+..+++ ||.+.... -...
T Consensus 83 ~~-----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 83 EA-----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HH-----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhcc
Confidence 11 111124578899999998643 233333323 22444444 34443211 1112
Q ss_pred cceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHh
Q 038611 258 CKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAAS 314 (837)
Q Consensus 258 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 314 (837)
+..+.+.+++.++.+.++.+.+............+....|++.|+|.+..+..+...
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 333899999999999999986543211000114567888999999999876555433
No 45
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=7.9e-06 Score=92.97 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=117.0
Q ss_pred ccccccchhHHHHHHHHHhc----CCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhc--CCCC--eEEEEEeCCCcCHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLM----GDK-APKIGVWGMGGIGKTTIMKEINNRLQKET--NKFN--VVIWVTVSQPLDLIK 178 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~----~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~--~~~wv~vs~~~~~~~ 178 (837)
..++|| ++++++|...+. +.. ..++.|+|.+|.|||+.++.|.+.+.... .... .+++|++..-.+...
T Consensus 755 D~LPhR--EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCR--EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CcCCCh--HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 378899 667777766553 333 36788999999999999999998774321 1112 367787777777888
Q ss_pred HHHHHHHHhcCCCCC-CccHHHHHHHHHHHHhc--CCeEEEEEeCCCCCcc-----ccccccCCCCCCCCcEEEE--EeC
Q 038611 179 LQTEIATALKESLPE-NEDKVSRAGRLLGMLKA--KAKFVLILDDMWEAFP-----LEKVGIPEPNKENGCKLVI--TTR 248 (837)
Q Consensus 179 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~~s~iiv--TtR 248 (837)
+...|..++....+. .......+..+...+.. +...+||||+|+.-.. +-.+.. ++. ..+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR-~~~-~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD-WPT-KINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH-Hhh-ccCCeEEEEEecC
Confidence 889999888543332 22233444555554422 2246899999985321 111111 111 23445443 333
Q ss_pred C--------hhHhhhCCcceEEeccCCHHhHHHHHHHHhCCC-CCCCchhhHHHHHHHHHHhCCchhHHHHHHHhc
Q 038611 249 S--------YRVCRSMKCKQVEVELLSKEEAFNLFIDRVGSS-ILQVPTLNREIINSIVEECGCLPLAIVTVAASM 315 (837)
Q Consensus 249 ~--------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 315 (837)
. +.+...++...+...|.+.++..+++...+... ..-++..++-+|+.++...|-.=.||.++-.+.
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 122223333336779999999999999887542 111112233334433333344555665554443
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=6.1e-09 Score=101.98 Aligned_cols=132 Identities=29% Similarity=0.293 Sum_probs=74.0
Q ss_pred cCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEecc
Q 038611 513 HMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLY 592 (837)
Q Consensus 513 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 592 (837)
.++.|..||||+|.|+.+-+++.-++.+|.|++++| .+..+.++..|++|+.|||++|.+.++.-.-.+|-|.++|.++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 345566666666666666666666666666666663 3444445566666666666666555443322445556666666
Q ss_pred CCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccc
Q 038611 593 SPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 593 ~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
+|.+..+. | +++|-+|..|++..+.-.....+..+++| +.|+.+.+.+|.+..
T Consensus 361 ~N~iE~LS-G-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETLS-G-LRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhhh-h-hHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCCccc
Confidence 66655552 3 56666666666633322233344555666 666666666555443
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=2.4e-06 Score=96.56 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=109.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc------------------CCCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 168 (837)
.+++|. +..++.|..++..+++ +.+.++|..|+||||+|+.+.+.+.-.. +.|.-++++
T Consensus 16 dEVIGQ--e~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQ--EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCc--HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 378998 6778888888887764 6778999999999999999988762110 011112222
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCK 242 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ 242 (837)
+.+....+. .+..+++.. ..++.-++|||+++... .++.+...+..-....+
T Consensus 94 DAas~rgVD----------------------dIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 94 DAASNRGVD----------------------EMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred cccccccHH----------------------HHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 222211111 122222221 13455688899998653 34444433322234667
Q ss_pred EEEEeCChh-Hhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHHHHH
Q 038611 243 LVITTRSYR-VCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIVTVA 312 (837)
Q Consensus 243 iivTtR~~~-v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 312 (837)
+|+||.+.+ +.. ...|..+++++++.++..+.+.+.+......- ..+....|++.++|..- |+..+-
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777776643 321 22344599999999999999988776542222 45678899999999664 554433
No 48
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.53 E-value=2.5e-06 Score=86.35 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=107.6
Q ss_pred HHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHH
Q 038611 121 IIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSR 200 (837)
Q Consensus 121 ~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 200 (837)
-|.+.+.++.++-+.+||++|+||||||+.+.... +.+ ...||..|....-.+-.+.|.++-..
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~--SyrfvelSAt~a~t~dvR~ife~aq~----------- 215 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKH--SYRFVELSATNAKTNDVRDIFEQAQN----------- 215 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCC--ceEEEEEeccccchHHHHHHHHHHHH-----------
Confidence 34566677889999999999999999999999874 222 15678777665544445555543211
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE--EeCChhH----hhhCCcceEEeccCCHHhHH
Q 038611 201 AGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI--TTRSYRV----CRSMKCKQVEVELLSKEEAF 272 (837)
Q Consensus 201 ~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv--TtR~~~v----~~~~~~~~~~l~~L~~~~~~ 272 (837)
. ..+.++|.+|.+|.|+.. .+-+.+ +|...+|..++| ||.+++. +-...|..+.|++|..++..
T Consensus 216 ----~-~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~ 287 (554)
T KOG2028|consen 216 ----E-KSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVV 287 (554)
T ss_pred ----H-HhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHH
Confidence 1 123678999999999854 333323 344466776665 7877664 33345555899999999999
Q ss_pred HHHHHHh---CCCC---CCCch----hhHHHHHHHHHHhCCchhH
Q 038611 273 NLFIDRV---GSSI---LQVPT----LNREIINSIVEECGCLPLA 307 (837)
Q Consensus 273 ~Lf~~~~---~~~~---~~~~~----~~~~~~~~i~~~c~GlPLa 307 (837)
.++.+.. +... .+-+. ....+...++..|+|..-+
T Consensus 288 ~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 288 TILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 9988743 2221 11111 2356778888889997654
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=6.5e-08 Score=107.19 Aligned_cols=172 Identities=31% Similarity=0.408 Sum_probs=102.1
Q ss_pred cccEEEccccCCCCCCCCCCCCCC-cccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCE-ILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
.+..+.+..|.+..+++.. .... +|+.|++++| .+..+|..+ ..++.|+.|++++|.+..+|...+.+++|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N-~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDN-KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCcccc-ccchhhccccccccc-chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4566666666666665532 2332 6667776666 555554332 6666777777777776666665556666777777
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
++ +.+..+| .+..+..|++|.+++|.+...+..+.+++++..+.+.+|.+..++.. ++.+++|+.|++ .++.....
T Consensus 194 s~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~-s~n~i~~i 270 (394)
T COG4886 194 SG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDL-SNNQISSI 270 (394)
T ss_pred cC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceecc-cccccccc
Confidence 66 4566666 44555566777666665555566666666666666666665554444 566666666666 33332222
Q ss_pred hHHHHhhhhhccCeeEEeecccc
Q 038611 625 TVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
. .++.+ .+|+.|+++.+.+.
T Consensus 271 ~--~~~~~-~~l~~L~~s~n~~~ 290 (394)
T COG4886 271 S--SLGSL-TNLRELDLSGNSLS 290 (394)
T ss_pred c--ccccc-CccCEEeccCcccc
Confidence 2 15555 66666666655443
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.9e-06 Score=90.30 Aligned_cols=176 Identities=14% Similarity=0.220 Sum_probs=111.2
Q ss_pred cccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHH---hhcCCCCeEEEEEe-CCCcCHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQ---KETNKFNVVIWVTV-SQPLDLIKLQTEI 183 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~---~~~~~f~~~~wv~v-s~~~~~~~~~~~i 183 (837)
+++|. +..++.+..++..+.. +++.++|+.|+||||+|+.+++..- ....+.|...|... +....+.++ +++
T Consensus 5 ~i~g~--~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~ 81 (313)
T PRK05564 5 TIIGH--ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNI 81 (313)
T ss_pred hccCc--HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHH
Confidence 56786 6678888888877654 6889999999999999999998652 12345666556542 233333332 233
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCC--CCccccccccCCCCCCCCcEEEEEeCChhHh-h--hCCc
Q 038611 184 ATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMW--EAFPLEKVGIPEPNKENGCKLVITTRSYRVC-R--SMKC 258 (837)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~-~--~~~~ 258 (837)
.+.+... .. .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. . ...+
T Consensus 82 ~~~~~~~----------------p~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 82 IEEVNKK----------------PY-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHhcC----------------cc-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 3333211 01 2345566667765 4445666655554445678888888665422 1 2234
Q ss_pred ceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 259 KQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 259 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
..+.+.+++.++....+.+.+... -.+.+..++..++|.|..+...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 448999999999988887654321 2344678899999988765443
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=3.9e-07 Score=83.49 Aligned_cols=117 Identities=23% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
-+.+.|+|.+|+|||++++.+.++..... ..-..++|+.+....+...+...|+.+++...............+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 47899999999999999999999863211 1134577999888779999999999999987665445555667777777
Q ss_pred hcCCeEEEEEeCCCCC-c--cccccccCCCCCCCCcEEEEEeCC
Q 038611 209 KAKAKFVLILDDMWEA-F--PLEKVGIPEPNKENGCKLVITTRS 249 (837)
Q Consensus 209 ~~~k~~LlVlDdv~~~-~--~~~~l~~~~~~~~~~s~iivTtR~ 249 (837)
...+..+||+|+++.- . .++.+.... + ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 6667789999999764 2 122222212 2 556677776665
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=6.8e-06 Score=92.73 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=133.1
Q ss_pred ccccccchhHHHHHHHHHhcC----CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMG----DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
.+++|. ++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++.. .++ ++-++.++..+... ...+
T Consensus 14 ~dlvg~--~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~-i~~~ 84 (482)
T PRK04195 14 SDVVGN--EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADV-IERV 84 (482)
T ss_pred HHhcCC--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHH-HHHH
Confidence 378998 6677777777653 226899999999999999999999875 133 34445554333222 2222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc------ccccccCCCCCCCCcEEEEEeCChh-Hhh--
Q 038611 184 ATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP------LEKVGIPEPNKENGCKLVITTRSYR-VCR-- 254 (837)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~~s~iivTtR~~~-v~~-- 254 (837)
+...... ..+...++-+||+|+++.... +..+...+. ..+..||+|+.+.. ...
T Consensus 85 i~~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 2221110 011113678999999986422 222322222 22344666664421 111
Q ss_pred -hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCc---CHHHHHHHHHH
Q 038611 255 -SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEE---EIYEWQNALNE 330 (837)
Q Consensus 255 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~---~~~~w~~~l~~ 330 (837)
...+..+.+.+++.++....+.+.+....... -.+....|++.++|..-.+......+.... +......+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~-- 222 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG-- 222 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh--
Confidence 11233389999999999998887764432222 356789999999998776655544443321 122221111
Q ss_pred HHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCcc
Q 038611 331 LRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEE 394 (837)
Q Consensus 331 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~ 394 (837)
. .+...+++.++..-+..=........+..+ .++. ..+-.|+.|.+...
T Consensus 223 --~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 223 --R-----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred --c-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 0 223345666665544421112233222211 1222 35778999999765
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=2.2e-06 Score=92.86 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=107.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCcC-HHHHHH---H
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLD-LIKLQT---E 182 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~-~~~~~~---~ 182 (837)
..++|+ +..++.+..++..+..+.+.++|+.|+||||+|+.+++... ...+. ..+.+++++..+ ...... .
T Consensus 15 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQ--DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCC--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcc
Confidence 478898 66888888888887777889999999999999999998762 11221 234444433110 000000 0
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHh-----cCCeEEEEEeCCCCCcc--ccccccCCCCCCCCcEEEEEeCChh-Hhh
Q 038611 183 IATALKESLPENEDKVSRAGRLLGMLK-----AKAKFVLILDDMWEAFP--LEKVGIPEPNKENGCKLVITTRSYR-VCR 254 (837)
Q Consensus 183 i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~s~iivTtR~~~-v~~ 254 (837)
....++...............+.+... .+.+-+||+||++.... ...+...+......+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000000000011122222222221 13345899999975421 2222222212233467777765432 211
Q ss_pred hC--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 255 SM--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 255 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.. .+..+.+.+++.++...++.+.+......- -.+....+++.++|.+-.+...
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 122388999999999998888664432222 4567888999999876655443
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.8e-08 Score=102.73 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=17.9
Q ss_pred ccCCCCEEeccCCcCcc--ccccccCCCCCCEEeccCC
Q 038611 559 KLLALQHLDLRGTSIEE--VPEGMQMLENLSHLYLYSP 594 (837)
Q Consensus 559 ~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~ 594 (837)
.+++|+.|.+++|++.. +-.-+..+|+|..|++.+|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 34455555555554431 2222334556666666555
No 55
>PF13173 AAA_14: AAA domain
Probab=98.47 E-value=3.7e-07 Score=83.02 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=77.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
-+++.|.|+.|+||||++++++.+.. ....+++++..+.........+ ....+.+. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~-~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD-----------------LLEYFLEL-IK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHh-hc
Confidence 37899999999999999999998862 3345677776554321110000 11112222 13
Q ss_pred CCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhhh-----CCcc-e-EEeccCCHHhH
Q 038611 211 KAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRS-----MKCK-Q-VEVELLSKEEA 271 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~-----~~~~-~-~~l~~L~~~~~ 271 (837)
.++.+|+||++....+|......+.+.....+||+|+........ .... . +++.||+-.|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 367889999999988887765555444456899999998766432 1122 2 89999997764
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.3e-06 Score=98.67 Aligned_cols=181 Identities=14% Similarity=0.170 Sum_probs=106.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC------------------CCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 168 (837)
..++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++.+..... .|.-++++
T Consensus 16 ddIIGQ--e~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQ--SHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 378998 6677788888887776 45689999999999999999987621100 01111222
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivT 246 (837)
..+....+.. .++|...+ ...-..+++-++|||+++.. ...+.+...+-......++|++
T Consensus 94 dAas~~kVDd-IReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred ccccccCHHH-HHHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2111111111 12222211 11111466779999999864 3344443333222334555554
Q ss_pred -eCChhHhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 247 -TRSYRVCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 247 -tR~~~v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
|....+.. ...+..|++.+++.++....+.+.+....... -.+.+..|++.++|.|--+..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 44444432 22345599999999999999888764432222 4567888999999988655444
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.1e-06 Score=90.77 Aligned_cols=191 Identities=18% Similarity=0.251 Sum_probs=104.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.+...+..+++ +.+.++|+.|+||||+|+.+++...-. .... ..+...-....++...
T Consensus 16 ~~iiGq--~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~-~~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQ--KHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ-NGIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCCCHHHHHHhcC
Confidence 478998 6677788888877654 678999999999999999999876210 0000 0000000001111110
Q ss_pred hcCCC----CCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCCh-hHhhh
Q 038611 187 LKESL----PENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY-RVCRS 255 (837)
Q Consensus 187 l~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~ 255 (837)
...+. ............+...+. .+++-++|+|+++... .++.+...+.......++|++|.+. .+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 000011122222222221 2455689999998653 3444433332223455666666543 33222
Q ss_pred C--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 256 M--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 256 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
. .+..+++.+++.++....+...+......- -.+.+..|++.++|.|-.+...
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 233499999999999988887654332112 3456788999999988654433
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2e-06 Score=93.63 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=107.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..+..|..++..+++ +.+.++|+.|+||||+|+.+++..... .... ...+....+...+...+...
T Consensus 18 ~dvVGQ--e~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~--~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 18 RDVIHQ--DLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE--NPIG--NEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHhCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc--cccC--ccccCCCcHHHHHHccCCcc
Confidence 378998 6677888888888775 468999999999999999999875211 1000 00111111111111111000
Q ss_pred hc-CCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEE-EEeCChhHhh--hC
Q 038611 187 LK-ESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLV-ITTRSYRVCR--SM 256 (837)
Q Consensus 187 l~-~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~--~~ 256 (837)
+. .+.. .....+.+..+.+.+ ..++.-++|+|+++.. ..++.+...+........+| .||....+.. ..
T Consensus 92 viEIdaa-s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 92 VLEIDAA-SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred ceeechh-hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 00 0000 000111222222222 2456678999999854 34555443332222344444 4554444422 22
Q ss_pred CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 257 KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 257 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+..|.+.+++.++....+.+.+......- ..+....|++.++|.+--+..+
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHHHHH
Confidence 344599999999999988887765432222 3567889999999988544433
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.5e-06 Score=95.24 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=107.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN--KFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
.++||. +..++.|.+++..+++ +.+.++|..|+||||+|+.+.+.+--... ... +. +..+..-...+.|.
T Consensus 16 ddVIGQ--e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~~-~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQ--EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----IT-AQPCGQCRACTEID 88 (700)
T ss_pred HHHcCc--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----CC-CCCCcccHHHHHHH
Confidence 378998 6678888888887765 57799999999999999999987621000 000 00 00000001111111
Q ss_pred HH-----hcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEE-EEeCChhH
Q 038611 185 TA-----LKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLV-ITTRSYRV 252 (837)
Q Consensus 185 ~~-----l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~ii-vTtR~~~v 252 (837)
.. +..+... ....+.+..+++.. ..++.-++|||+++.. ...+.+...+..-..++++| +||....+
T Consensus 89 aG~hpDviEIdAas-~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAAS-NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 0000000 01112222232222 1456678999999864 33444443332223344544 55555554
Q ss_pred hhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 253 CRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 253 ~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
... ..|..+.+..++.++..+.+.+.+....... ..+....|++.++|.|.-...+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 2344499999999999999887765432222 3456688999999999755544
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.45 E-value=4.5e-06 Score=89.02 Aligned_cols=179 Identities=15% Similarity=0.162 Sum_probs=104.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
+++|. ++.++.|..++..+..+-+.++|++|+||||+|+.+++... ...|. .++-++.++..+... .+.+++.+
T Consensus 14 ~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~-vr~~i~~~ 88 (319)
T PLN03025 14 DIVGN--EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDV-VRNKIKMF 88 (319)
T ss_pred HhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHH-HHHHHHHH
Confidence 78887 56777788888777777788999999999999999998762 12222 122233333333222 22222221
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc--ccccccCCCCCCCCcEEEEEeCCh-hHhh--hCCcceEE
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP--LEKVGIPEPNKENGCKLVITTRSY-RVCR--SMKCKQVE 262 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~s~iivTtR~~-~v~~--~~~~~~~~ 262 (837)
..... ....++.-++|||+++.... ...+...+......+++|+++... .+.. ...+..++
T Consensus 89 ~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 89 AQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred Hhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 11000 00124567899999986421 222221121223456677666442 2211 11233389
Q ss_pred eccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 263 VELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 263 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
+.+++.++....+...+......- -.+....|++.++|..-.+.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 999999999998888765442222 34578899999998765443
No 61
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.45 E-value=2e-06 Score=87.08 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=104.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
.++| .....+..+..+......+.+.|+|+.|+|||+||+.+++.... ....+.++++.....
T Consensus 24 f~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 24 FYPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh-------------
Confidence 3446 33455666666665556678999999999999999999997632 234567776543100
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC---ccccccc-cCCCC-CCCC-cEEEEEeCChh---------Hh
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA---FPLEKVG-IPEPN-KENG-CKLVITTRSYR---------VC 253 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~l~-~~~~~-~~~~-s~iivTtR~~~---------v~ 253 (837)
....+.+.+. +--+++|||+... ..|+... ..+.. ...| .++|+||+... ..
T Consensus 87 -----------~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 -----------FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred -----------hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHH
Confidence 0001112221 1237899999753 2343221 11111 1123 47999998642 33
Q ss_pred hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 254 RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 254 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
.++.... +++.+++.++-.+.+.+.+......- -+++...|++.+.|..-++..+-.
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4444445 89999999999999887664332222 467888899999886665554433
No 62
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=5.1e-07 Score=91.12 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCccH-----HHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQTEIATALKESLPENEDK-----VSRA 201 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~ 201 (837)
.....++|+|++|+|||||++++++... ..+|+.++|+.+... +++.++++.+...+-....+.... ...+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999873 238999999997766 789999999833322211111111 1111
Q ss_pred HHHHHH-HhcCCeEEEEEeCCCCC
Q 038611 202 GRLLGM-LKAKAKFVLILDDMWEA 224 (837)
Q Consensus 202 ~~l~~~-l~~~k~~LlVlDdv~~~ 224 (837)
....+. ...+++.++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 23589999999999754
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.4e-06 Score=93.53 Aligned_cols=190 Identities=17% Similarity=0.173 Sum_probs=107.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++...-. . ++.. ..++.-...+.|...
T Consensus 15 ddVIGQ--e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~-~------~~~~-~pCg~C~sC~~I~~g 84 (702)
T PRK14960 15 NELVGQ--NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE-T------GVTS-TPCEVCATCKAVNEG 84 (702)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-c------CCCC-CCCccCHHHHHHhcC
Confidence 378998 6678888888887764 688999999999999999998875210 0 1100 000100111111100
Q ss_pred hcC-----CCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCCh-hHh-
Q 038611 187 LKE-----SLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY-RVC- 253 (837)
Q Consensus 187 l~~-----~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~-~v~- 253 (837)
-.. +... ......+..++... ..+++-++|+|+++... ..+.+...+.....+.++|++|.+. .+.
T Consensus 85 ~hpDviEIDAAs-~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 85 RFIDLIEIDAAS-RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCceEEecccc-cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000 0000 00111222222221 13566789999998642 3333333332223455677666553 222
Q ss_pred h-hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 254 R-SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 254 ~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
+ ...+..+++.+++.++....+.+.+......- -.+....|++.++|.+-.+..+
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 12344499999999999999888775442222 4567788999999988555443
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=3e-07 Score=101.93 Aligned_cols=161 Identities=27% Similarity=0.344 Sum_probs=136.0
Q ss_pred cccccCCCchhhhcc-cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 452 REHLLEFPGEQEWKA-NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 452 ~~~~~~~p~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
...+..+|....... +++.+++..|.+..+|.. ...+++|+.|+++.| .+..+|... ...+.|+.|++++|.+..+
T Consensus 125 ~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~-~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLL-SNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred CcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhh-hhhhhhhheeccCCccccC
Confidence 334556666555553 899999999999988633 378999999999999 788888753 4889999999999999999
Q ss_pred ChhhhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccC
Q 038611 531 PNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL 610 (837)
Q Consensus 531 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 610 (837)
|..+..+.+|.+|.+++|..+..+..+.++.++..|.+.++.+..+|..++.+++|+.|++++|.+..++. ++.+.+|
T Consensus 202 ~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l 279 (394)
T COG4886 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNL 279 (394)
T ss_pred chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCcc
Confidence 98888888899999999654444447999999999999999888888899999999999999999999987 7999999
Q ss_pred cEEEccc
Q 038611 611 CRLSLYF 617 (837)
Q Consensus 611 ~~L~l~~ 617 (837)
+.|++..
T Consensus 280 ~~L~~s~ 286 (394)
T COG4886 280 RELDLSG 286 (394)
T ss_pred CEEeccC
Confidence 9999933
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=1.8e-06 Score=80.89 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCc
Q 038611 116 KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENE 195 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 195 (837)
+..+..+...+.....+.+.|+|.+|+||||+|+.+++... ..-..++++...+..........+...
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 71 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF--------- 71 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh---------
Confidence 56778888888776778999999999999999999999863 222446777665543322221111100
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEEeCCCCC-----ccccccccCCCC---CCCCcEEEEEeCChh
Q 038611 196 DKVSRAGRLLGMLKAKAKFVLILDDMWEA-----FPLEKVGIPEPN---KENGCKLVITTRSYR 251 (837)
Q Consensus 196 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~~~~---~~~~s~iivTtR~~~ 251 (837)
............++-+||+||++.. ..+......... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111112456789999999853 112221111211 135778888888643
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=2.2e-05 Score=90.55 Aligned_cols=198 Identities=14% Similarity=0.108 Sum_probs=105.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC---CeEEEEEeCC---CcCHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQ---PLDLIKLQT 181 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~~~wv~vs~---~~~~~~~~~ 181 (837)
..++|+ +..+..+...+.......+.|+|++|+||||+|+.+++... ....+ ...-|+.+.. ..+...+..
T Consensus 154 ~~iiGq--s~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~-~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQ--ERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK-KLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeC--cHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh-hccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 478898 45666777777666678899999999999999999988752 22222 1234444432 112222211
Q ss_pred HH---------------HHHhcCCC----------------CCCcc-HHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccc
Q 038611 182 EI---------------ATALKESL----------------PENED-KVSRAGRLLGMLKAKAKFVLILDDMWEA--FPL 227 (837)
Q Consensus 182 ~i---------------~~~l~~~~----------------~~~~~-~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~ 227 (837)
.+ +...+... +.... .......+.+.+ ..+++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVL-EDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHH-hhCeEEeecceeccCCcccc
Confidence 11 11111100 00000 112233444444 567788887766643 346
Q ss_pred cccccCCCCCCCCcEEEE--EeCChhH-hhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhC
Q 038611 228 EKVGIPEPNKENGCKLVI--TTRSYRV-CRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECG 302 (837)
Q Consensus 228 ~~l~~~~~~~~~~s~iiv--TtR~~~v-~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~ 302 (837)
..+...+....+...|++ ||++... ... ..+..+.+.+++.++.+.++.+.+......- -.++...|.+.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCC
Confidence 555544544344444555 5665432 111 1222378999999999999998765321111 2334444544443
Q ss_pred CchhHHHHHH
Q 038611 303 CLPLAIVTVA 312 (837)
Q Consensus 303 GlPLai~~~~ 312 (837)
.-+-|+..++
T Consensus 387 ~gRraln~L~ 396 (615)
T TIGR02903 387 EGRKAVNILA 396 (615)
T ss_pred cHHHHHHHHH
Confidence 3344444443
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=8e-06 Score=90.90 Aligned_cols=191 Identities=16% Similarity=0.174 Sum_probs=105.4
Q ss_pred cccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCcCHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
+++|. +..++.+...+..+.+ +.+.++|+.|+||||+|+.+++...... .... --+..+... .....|...
T Consensus 22 dliGq--~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C----~~C~~i~~~ 94 (507)
T PRK06645 22 ELQGQ--EVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQC----TNCISFNNH 94 (507)
T ss_pred HhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCC----hHHHHHhcC
Confidence 78998 6677777776766654 6899999999999999999998762110 0000 000000000 001111100
Q ss_pred hcC-----CCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEE-EEeCChhHhh
Q 038611 187 LKE-----SLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLV-ITTRSYRVCR 254 (837)
Q Consensus 187 l~~-----~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~ 254 (837)
... +... ......+..+.+.. ..+++-++|+|+++.- ..++.+...+......+.+| .||+...+..
T Consensus 95 ~h~Dv~eidaas-~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 95 NHPDIIEIDAAS-KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPA 173 (507)
T ss_pred CCCcEEEeeccC-CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhH
Confidence 000 0000 00111122222221 1356778999999864 33554443333323445555 4555555533
Q ss_pred hC--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 255 SM--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 255 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
.. .+..+++.+++.++....+.+.+....... ..+....|++.++|.+--+..
T Consensus 174 tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 174 TIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 22 333489999999999999998875442222 345677899999997754433
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.7e-08 Score=96.68 Aligned_cols=185 Identities=19% Similarity=0.188 Sum_probs=108.9
Q ss_pred CCCEEeccCCcCcc--ccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHH-HhhhhhccCe
Q 038611 562 ALQHLDLRGTSIEE--VPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEE-TGRLSDRLDT 638 (837)
Q Consensus 562 ~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~~L~~ 638 (837)
.||+|||+...|+. +-.-+..+.+|+.|.+.|+.+..--...+.+-.+|+.|++..+++++...+.- +..+ +.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc-s~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC-SRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh-hhHhh
Confidence 37777777765542 33334677888888888877664222225666788888887777776666544 3445 88888
Q ss_pred eEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecch
Q 038611 639 FEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDI 718 (837)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 718 (837)
|++++|++..-..-+.. ...-++|..|+++||...
T Consensus 265 LNlsWc~l~~~~Vtv~V---------------------------------------------~hise~l~~LNlsG~rrn 299 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAV---------------------------------------------AHISETLTQLNLSGYRRN 299 (419)
T ss_pred cCchHhhccchhhhHHH---------------------------------------------hhhchhhhhhhhhhhHhh
Confidence 88888876431100000 001255666677666521
Q ss_pred hhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccc
Q 038611 719 ASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITI 798 (837)
Q Consensus 719 ~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~ 798 (837)
-...+ +..| ....+ +|.+|+|++|..++.- ....+-.++.|++|.++.|..|- |.. -
T Consensus 300 l~~sh----~~tL--~~rcp-~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~--p~~-------------~ 356 (419)
T KOG2120|consen 300 LQKSH----LSTL--VRRCP-NLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDII--PET-------------L 356 (419)
T ss_pred hhhhH----HHHH--HHhCC-ceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCC--hHH-------------e
Confidence 11000 0000 12344 8888888888777762 33345567888888888887652 110 0
Q ss_pred cccccCCCcceEecccc
Q 038611 799 INILTLPRLKKLEFHYL 815 (837)
Q Consensus 799 ~~~~~~p~L~~L~L~~~ 815 (837)
......|+|..|++.+|
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 13455688888887776
No 69
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.1e-07 Score=98.37 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=16.1
Q ss_pred cCCCCEEeccCCcCcccc--ccccCCCCCCEEeccCCCC
Q 038611 560 LLALQHLDLRGTSIEEVP--EGMQMLENLSHLYLYSPPL 596 (837)
Q Consensus 560 l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l 596 (837)
++.|+.|||++|.+..++ ..++.++.|..|+++.|.+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCc
Confidence 344444444444444333 2234444444444444443
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.3e-05 Score=89.69 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=106.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.|..++..+.. +.+.++|++|+||||+|+.+++...-. +.+...+|+|.+... +......-+..
T Consensus 14 ~dvvGq--~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc~~-i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQ--EHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCLA-VRRGAHPDVLE 89 (504)
T ss_pred HHhcCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhhHH-HhcCCCCceEE
Confidence 378997 6677888888877765 567999999999999999999886211 122222333221100 00000000000
Q ss_pred hcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEe-CChhHhhh--CC
Q 038611 187 LKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITT-RSYRVCRS--MK 257 (837)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTt-R~~~v~~~--~~ 257 (837)
++. .... ....+..+...+ ..+++-++|+|+++... .++.+...+......+.+|++| ....+... ..
T Consensus 90 l~~--~~~~-~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 90 IDA--ASNN-SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred ecc--cccC-CHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 000 0000 111122222211 13456789999998542 3444433332223344555444 44443222 22
Q ss_pred cceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 258 CKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 258 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
+..+++.+++.++....+.+.+....... -.+.+..|++.++|.+--+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 34499999999999999988765432222 35678899999999886553
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=1e-05 Score=86.84 Aligned_cols=180 Identities=12% Similarity=0.171 Sum_probs=104.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe--CCCcCHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLDLIKLQTEIAT 185 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~ 185 (837)
.+++|+ ++.++.+..++..+..+.+.|+|..|+||||+|+.+++.... ..+. ..++.. +.......+. ..+.
T Consensus 17 ~~~~g~--~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~-~~i~ 90 (319)
T PRK00440 17 DEIVGQ--EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIR-NKIK 90 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHH-HHHH
Confidence 378898 668888888888777777899999999999999999987621 1121 122222 2222222111 1111
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCCh-hHhhh--CCcce
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY-RVCRS--MKCKQ 260 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~--~~~~~ 260 (837)
.+....+ +....+-++++|+++... ....+...+......+.+|+++... .+... ..+..
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1110000 001235688999987542 2222222222223345677666432 22111 11223
Q ss_pred EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 261 VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
+++.+++.++....+...+......- -.+.+..+++.++|.+--+...
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999888887765432222 3567889999999987664443
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=5.9e-06 Score=83.57 Aligned_cols=168 Identities=12% Similarity=0.136 Sum_probs=98.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
.|++.. ...+..+.....+.....+.|+|..|+|||.||+++++.... . ...+.|+++.+ ....+.
T Consensus 20 ~f~~~~-~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~-~--~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 20 SYIAAP-DGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ-A--GRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hccCCc-HHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH-c--CCcEEEEeHHH------hhhhHH----
Confidence 455432 234444444443444467999999999999999999988632 2 23566775322 111111
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---cccccccCC-CC-CCCCcEEEEEeCChh---------Hhh
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---PLEKVGIPE-PN-KENGCKLVITTRSYR---------VCR 254 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~~-~~-~~~~s~iivTtR~~~---------v~~ 254 (837)
...+.+ .+.-+|||||+.... .|......+ .. ...+..||+||+... +..
T Consensus 86 --------------~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 --------------DALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred --------------HHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 112222 234589999997432 232211111 11 134567999998632 223
Q ss_pred hCCcc-eEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 255 SMKCK-QVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 255 ~~~~~-~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
.+... .+++++++.++-..++.+.+......- -.+....|++.++|..-.+.
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHHH
Confidence 33233 389999999999999998664332222 45678888998887665553
No 73
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.2e-05 Score=89.98 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=104.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc------------------CCCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 168 (837)
.+++|. +..++.+...+..+++ +.+.++|+.|+||||+|+.+++...... +.|.-++++
T Consensus 16 ~diiGq--~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQ--QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 378998 6677888888877665 5688999999999999999998652100 011122233
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEE-E
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLV-I 245 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ii-v 245 (837)
.......+.++ ++|++.+ ...-..+++-++|+|+++... ..+.+...+......+.+| +
T Consensus 94 daas~~gvd~i-r~ii~~~-----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEET-KEILDNI-----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 22222222111 1111111 111113566799999997542 3343433332223345455 5
Q ss_pred EeCChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHHHH
Q 038611 246 TTRSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIVTV 311 (837)
Q Consensus 246 TtR~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 311 (837)
||....+... ..+..+++.+++.++....+.+.+....... -.+....|++.++|.+- |+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544444322 2244499999999998888877654332222 35567889999999664 44444
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=2e-05 Score=84.69 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=108.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc-CCCC-eEEEEEeCCCcCHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET-NKFN-VVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~-~~~wv~vs~~~~~~~~~~~i~ 184 (837)
..++|. +..++.+.+.+..+.+ +.+.++|+.|+||||+|..+++..--.. .... +..-...-.....-...+.|.
T Consensus 19 ~~iiGq--~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGH--AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 379997 6777888888887765 6799999999999999999988762111 0000 000000000000001111111
Q ss_pred HHhcCC-------CCC------CccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEE
Q 038611 185 TALKES-------LPE------NEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVI 245 (837)
Q Consensus 185 ~~l~~~-------~~~------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iiv 245 (837)
..-..+ ... ..-..+.+..+.+.+. .+.+-++|+||++... ....+...+..-..++.+|+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 100000 000 0112333444444432 3567799999997542 33333333322234556666
Q ss_pred EeCChh-Hhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 246 TTRSYR-VCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 246 TtR~~~-v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+|.+.+ +.. ...+..+.+.+++.++..+++.+..+.. ..+....+++.++|.|..+..+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 666643 321 2234449999999999999998764322 12223678999999998776553
No 75
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=9.2e-05 Score=79.39 Aligned_cols=198 Identities=17% Similarity=0.225 Sum_probs=124.6
Q ss_pred cccccchhHHHHHHHHHh----cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENL----MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
.+.+| +.+++++...+ .+..+.-+.|+|..|.|||+.++.+.+.........+ +++|++-...+..++..+|+
T Consensus 18 ~l~~R--e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHR--EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccc--HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 48888 66666666555 4455556999999999999999999998854433333 89999999999999999999
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhc-CCeEEEEEeCCCCCccc-----cccccCCCCCCCCcEE--EEEeCChhHh---
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKA-KAKFVLILDDMWEAFPL-----EKVGIPEPNKENGCKL--VITTRSYRVC--- 253 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~-----~~l~~~~~~~~~~s~i--ivTtR~~~v~--- 253 (837)
++++..........+....+.+.+.. ++.+++|||+++.-..- -.+.. .+. ...++| |..+-+-...
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r-~~~-~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR-APG-ENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh-hcc-ccceeEEEEEEeccHHHHHHh
Confidence 99985544445555556666666643 67899999999753221 12211 111 113433 3344443322
Q ss_pred -----hhCCcceEEeccCCHHhHHHHHHHHhCCC---CCCCchhhHHHHHHHHHHhCC-chhHHHHHH
Q 038611 254 -----RSMKCKQVEVELLSKEEAFNLFIDRVGSS---ILQVPTLNREIINSIVEECGC-LPLAIVTVA 312 (837)
Q Consensus 254 -----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 312 (837)
...+...+..+|-+.++-...+...+... ..-.+. ..+.+..++..-+| .=.||..+-
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcCccHHHHHHHHH
Confidence 22233337788999999999888766322 111112 44444444444444 445555543
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=88.89 Aligned_cols=184 Identities=18% Similarity=0.219 Sum_probs=104.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC------------------CCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 168 (837)
.+++|. +..++.|...+..+.+ +.+.++|++|+||||+|+.+++....... .+..+..+
T Consensus 14 ~divGq--~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQ--DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 378998 5567777787877776 56899999999999999999887521100 00112223
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivT 246 (837)
+.+...+...+ ++|...... .. ..+++-++|+|+++.- ...+.+...+........+|++
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~----------------~p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGY----------------RP-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhh----------------Ch-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 32222222221 122211110 01 1346679999999753 2233333333222233444444
Q ss_pred eCC-hhHhhhC--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCC-chhHHHHHHHh
Q 038611 247 TRS-YRVCRSM--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGC-LPLAIVTVAAS 314 (837)
Q Consensus 247 tR~-~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~~~ 314 (837)
|.+ ..+.... .+..+.+.+++.++....+.+.+......- -.+....|++.++| .+.|+..+-.+
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 433 3332222 233389999999999988888764332222 35567888888866 45666666543
No 77
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=5.6e-06 Score=82.93 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+.+.|+|..|+|||+|++.+++.. . ..+++.. .+..++. ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~---------------------~~~~ 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAA---------------------NAAA 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHH---------------------Hhhh
Confidence 34679999999999999999888753 1 1243221 1111111 1111
Q ss_pred cCCeEEEEEeCCCCCcc-ccccccCCC-CCCCCcEEEEEeCC---------hhHhhhCCcce-EEeccCCHHhHHHHHHH
Q 038611 210 AKAKFVLILDDMWEAFP-LEKVGIPEP-NKENGCKLVITTRS---------YRVCRSMKCKQ-VEVELLSKEEAFNLFID 277 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~-~~~l~~~~~-~~~~~s~iivTtR~---------~~v~~~~~~~~-~~l~~L~~~~~~~Lf~~ 277 (837)
. -+|++||+..... -..+...+. -...|..||+|++. ++....+.... +++++++.++-.+++++
T Consensus 88 ~---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 E---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred c---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1 2788899964321 111211111 11346779998874 22334444445 99999999999999998
Q ss_pred HhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 278 RVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
.+......- -+++...|++++.|..-++..+.
T Consensus 165 ~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQLYV---DPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcCCCC---CHHHHHHHHHHhhhhHHHHHHHH
Confidence 875542222 46788899999988777766543
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=9.4e-06 Score=94.37 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=96.7
Q ss_pred cccccchhHHH---HHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLVGEKTKKVV---EIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~vGr~~~~~~---~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
+++|++ ..+ ..+...+..+....+.|+|++|+||||+|+.+++.. ...| ..++.+. ....++ +++
T Consensus 29 d~vGQe--~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f---~~lna~~-~~i~di-r~~-- 96 (725)
T PRK13341 29 EFVGQD--HILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHF---SSLNAVL-AGVKDL-RAE-- 96 (725)
T ss_pred HhcCcH--HHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcc---eeehhhh-hhhHHH-HHH--
Confidence 788983 333 356667777788888999999999999999999875 2233 1121110 011110 111
Q ss_pred HhcCCCCCCccHHHHHHHHHHHH-hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE--EeCChh--Hhhh--C
Q 038611 186 ALKESLPENEDKVSRAGRLLGML-KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI--TTRSYR--VCRS--M 256 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv--TtR~~~--v~~~--~ 256 (837)
+......+ ..+++.+|||||++.. .+.+.+...+ ..|+.+++ ||.+.. +... .
T Consensus 97 ---------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 97 ---------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ---------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 11111111 1246789999999754 2333333222 33555555 344432 1111 1
Q ss_pred CcceEEeccCCHHhHHHHHHHHhCCC----CCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 257 KCKQVEVELLSKEEAFNLFIDRVGSS----ILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 257 ~~~~~~l~~L~~~~~~~Lf~~~~~~~----~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
.+..+.+++++.++...++.+.+... .......-.+....|++.+.|..-.+.
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 23338999999999999998866411 011111145677889999988754433
No 79
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.27 E-value=1.4e-06 Score=90.75 Aligned_cols=291 Identities=19% Similarity=0.163 Sum_probs=177.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+.+.++|.|||||||++-++.. .. ...=+.+.++......+...+.-.....++.......... ..+...+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~---~~~~~~~- 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAV---DTLVRRI- 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHH---HHHHHHH-
Confidence 358899999999999999999988 31 2233456677777666777777677777776654333222 2233333
Q ss_pred cCCeEEEEEeCCCCCcc-ccccccCCCCCCCCcEEEEEeCChhHhhhCCcce-EEeccCCHH-hHHHHHHHHhCCC----
Q 038611 210 AKAKFVLILDDMWEAFP-LEKVGIPEPNKENGCKLVITTRSYRVCRSMKCKQ-VEVELLSKE-EAFNLFIDRVGSS---- 282 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~-~~l~~L~~~-~~~~Lf~~~~~~~---- 282 (837)
.++|.++|+||.....+ -......+..+...-.|+.|+|... ...... +.+.+|+.- ++.++|...+...
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 57899999999754321 1111111112233446788888642 222333 778888864 7888887654322
Q ss_pred -CCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCH---HHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCc
Q 038611 283 -ILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEI---YEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKD 358 (837)
Q Consensus 283 -~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~---~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 358 (837)
.... ....+.+|.++.+|.|++|..+++..+.-... .....-...+......-...+......+.+||.-|.
T Consensus 163 ~l~~~---~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt- 238 (414)
T COG3903 163 WLTDD---NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT- 238 (414)
T ss_pred eecCC---chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh-
Confidence 2222 56788999999999999999999887763221 111221222222211111233567888999999998
Q ss_pred hhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHHHHHHHHHhhccccccccc--ceeeehhHHHHH
Q 038611 359 EKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGHTILNRLVNCCLLESARYG--RCVKMHDLIRDM 436 (837)
Q Consensus 359 ~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~--~~~~mHdlv~d~ 436 (837)
...+.-|.-++.|...|... ...|.+-|-... .........+..+++++++...+.. ..|+.-+-+|.|
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 67788899999998876543 233444432211 1223444556778888888654322 345566666777
Q ss_pred HHHHHhh
Q 038611 437 ALHIISK 443 (837)
Q Consensus 437 a~~~~~~ 443 (837)
+..+..+
T Consensus 310 alaeL~r 316 (414)
T COG3903 310 ALAELHR 316 (414)
T ss_pred HHHHHHh
Confidence 6665543
No 80
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=9.7e-06 Score=92.23 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=106.9
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.++||. +..++.|...+..+.+ +.+.++|..|+||||+|+.+++...-.. .. . +..+..-...+.|...
T Consensus 16 ~divGQ--e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~------~-~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQ--EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCET-GI------T-ATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhcc-CC------C-CCCCCCCHHHHHHHcC
Confidence 378998 6677888888887765 5678999999999999999988762110 00 0 0011111122222110
Q ss_pred hcCCC---CCC-ccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEE-EEeCChhHhh-
Q 038611 187 LKESL---PEN-EDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLV-ITTRSYRVCR- 254 (837)
Q Consensus 187 l~~~~---~~~-~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~- 254 (837)
-..+. ... ....+.+..+.+.+ ..+++-++|||+++.. ...+.+...+-.-....++| +||....+..
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 00000 000 01112222232222 1456778999999864 23443332222222344444 4555444432
Q ss_pred -hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 255 -SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 255 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
...|..+.+++++.++....+.+.+....... ..+....|++.++|.+--+..+.
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22355599999999999998887663321112 34567889999999887554443
No 81
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.26 E-value=3.9e-06 Score=88.15 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCccHH-----HHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--DLIKLQTEIATALKESLPENEDKV-----SRAG 202 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~ 202 (837)
.-.-..|+|++|+||||||++||+.... .+|+.++||.+.+.. .+.++++.|...+-....+..... ..+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~--nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT--NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh--hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 4577899999999999999999998732 389999999988877 788888888633222211111111 1111
Q ss_pred HHHHHH-hcCCeEEEEEeCCCCC
Q 038611 203 RLLGML-KAKAKFVLILDDMWEA 224 (837)
Q Consensus 203 ~l~~~l-~~~k~~LlVlDdv~~~ 224 (837)
...+.+ ..+++.+|++|++...
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHH
Confidence 222222 3689999999999753
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=4.1e-05 Score=74.18 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=88.0
Q ss_pred ccccccchhHHHHHH---HHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 108 ETLVGEKTKKVVEII---WENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l---~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
.++||.+ +.++.+ ++... ++...-+.+||++|+||||||..+++.. ...| .+++...-....++
T Consensus 24 ~efiGQ~--~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~---~~~sg~~i~k~~dl--- 92 (233)
T PF05496_consen 24 DEFIGQE--HLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNF---KITSGPAIEKAGDL--- 92 (233)
T ss_dssp CCS-S-H--HHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--E---EEEECCC--SCHHH---
T ss_pred HHccCcH--HHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCe---EeccchhhhhHHHH---
Confidence 3899983 344333 33332 3457889999999999999999999986 2222 22322111111111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc---------ccccccCC-CCCC-----------CCc
Q 038611 183 IATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP---------LEKVGIPE-PNKE-----------NGC 241 (837)
Q Consensus 183 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~~~-~~~~-----------~~s 241 (837)
..++..+ +++-+|.+|.++.-.. .++....+ -+.+ +-+
T Consensus 93 -------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 -------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1112222 2345777788875311 11111000 0111 122
Q ss_pred EEEEEeCChhHhhhCCcc--e-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhcc
Q 038611 242 KLVITTRSYRVCRSMKCK--Q-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMS 316 (837)
Q Consensus 242 ~iivTtR~~~v~~~~~~~--~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~ 316 (837)
-|=.|||..-+..-.... . .+++..+.+|-.....+.+..-..+- ..+.+.+|+++|.|-|--+.-+.+..+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 344688875443322222 2 58999999999999987765443232 567899999999999976665555444
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=3e-05 Score=85.66 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=105.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCCC-EEEEEcCCCChHHHHHHHHHHHHHhh------------------cCCCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAP-KIGVWGMGGIGKTTIMKEINNRLQKE------------------TNKFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~------------------~~~f~~~~wv 168 (837)
.++||. +..++.+...+..+.++ .+.++|+.|+||||+|+.+++...-. .+.+.-++.+
T Consensus 13 ~dliGQ--e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQ--DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 378998 66777777788777764 89999999999999999998753100 0111123344
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivT 246 (837)
+.+...++.++ ++|.+..... . ..+++-++|+|+++.-. ..+.+...+..-...+++|++
T Consensus 91 daas~~~vddI-R~Iie~~~~~----------------P-~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCYL----------------P-ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHhc----------------c-ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 44333333322 1222211100 0 13456689999997542 233333333222344555554
Q ss_pred e-CChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 247 T-RSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 247 t-R~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
| ....+... ..+..+++.+++.++....+.+.+......- -.+....|++.++|.+-.+.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 4 44444332 2333489999999999999988775542222 35567889999998775443
No 84
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=1.4e-05 Score=79.88 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=94.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
...+.|+|..|+|||.|++++++..... ..-..+++++ ..++...+...+... . ...+...+ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~------~~~f~~~~~~~~~~~-----~----~~~~~~~~-~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLS------AEEFIREFADALRDG-----E----IEEFKDRL-R 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEE------HHHHHHHHHHHHHTT-----S----HHHHHHHH-C
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeec------HHHHHHHHHHHHHcc-----c----chhhhhhh-h
Confidence 4578999999999999999999987432 2333567774 345566666655431 1 12333444 2
Q ss_pred CCeEEEEEeCCCCCc---cccc-cccCCC-CCCCCcEEEEEeCChh---------HhhhCCcce-EEeccCCHHhHHHHH
Q 038611 211 KAKFVLILDDMWEAF---PLEK-VGIPEP-NKENGCKLVITTRSYR---------VCRSMKCKQ-VEVELLSKEEAFNLF 275 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~---~~~~-l~~~~~-~~~~~s~iivTtR~~~---------v~~~~~~~~-~~l~~L~~~~~~~Lf 275 (837)
.-=+|+|||++... .|++ +...+. ....|.+||+|++... ...+..... +++.+.+.++-..++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 34577899997542 2222 111111 1134668999996632 223333444 899999999999999
Q ss_pred HHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 276 IDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+.+......- -++++..|++.+.+..-.+..+
T Consensus 176 ~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 176 QKKAKERGIEL---PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHHH
Confidence 98876553333 4677888888877655544433
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.3e-05 Score=84.87 Aligned_cols=184 Identities=12% Similarity=0.083 Sum_probs=99.5
Q ss_pred cccccchhHHHHHHHHHhcCCC----------CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDK----------APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~----------~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
.++|. +..++.|..++..+. .+.+.++|+.|+||||+|+.+++..--.... +..++.. .
T Consensus 6 ~IiGq--~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C----~ 74 (394)
T PRK07940 6 DLVGQ--EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGEC----R 74 (394)
T ss_pred hccCh--HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCC----H
Confidence 57887 667777888887653 5678999999999999999998765111000 0000000 0
Q ss_pred HHHHHHHHhcCC-----CCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEe
Q 038611 179 LQTEIATALKES-----LPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITT 247 (837)
Q Consensus 179 ~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTt 247 (837)
..+.+...-..+ ........+.+..+.+... .+++-++|+|+++... ..+.+...+.....+..+|++|
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 000110000000 0000011112222222221 2455588889998642 2233332222223345555555
Q ss_pred CC-hhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 248 RS-YRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 248 R~-~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+ ..+... ..+..+.+.+++.++....+.+..+. ..+.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 55 344322 23445999999999999888754332 2345788999999999766544
No 86
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.23 E-value=1.5e-06 Score=84.97 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=32.4
Q ss_pred cccccchhHHHHHHHHHh---cCCCCCEEEEEcCCCChHHHHHHHHHHHHHh
Q 038611 109 TLVGEKTKKVVEIIWENL---MGDKAPKIGVWGMGGIGKTTIMKEINNRLQK 157 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~ 157 (837)
+|+|| +++.+++...+ .....+.+.|+|.+|+|||+|+++++.....
T Consensus 1 ~fvgR--~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGR--EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT---HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999 78899998888 3346799999999999999999999998743
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=1.3e-07 Score=97.40 Aligned_cols=305 Identities=16% Similarity=0.117 Sum_probs=163.5
Q ss_pred ccEEEccccCCCCCC--CCCCCCCCcccEEEccCCcCccccC-hhHhhcCCCCcEEEecCCC-Cccc--Chhhhcccccc
Q 038611 468 LERVSLMMNDIDEIP--SNMSPHCEILSTLLLQRNINLQWIP-ECFFAHMHGLKILNLSFTA-IEVL--PNSVSDLMNLI 541 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~-i~~l--p~~i~~l~~L~ 541 (837)
++.+++.+..-.... ..+...|+++..|.+.++..++... .++-..+++|++|+|..|. ++.. -.-...+++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 455666554322221 1234678888888888776444321 2223567888888888864 4422 22334678888
Q ss_pred eecccCccccCCCc---cccccCCCCEEeccCC-cC--ccccccccCCCCCCEEeccCCC-CCCCCC-CcccCCccCcEE
Q 038611 542 SLLLQRCRRLKRVP---SVAKLLALQHLDLRGT-SI--EEVPEGMQMLENLSHLYLYSPP-LKELPA-GLLPRLRKLCRL 613 (837)
Q Consensus 542 ~L~L~~~~~l~~lp---~~~~l~~L~~L~l~~~-~i--~~lp~~~~~l~~L~~L~l~~~~-l~~~p~-~~l~~l~~L~~L 613 (837)
||++++|..++.=. -..++..|+.+.++|| .+ +.+-..-+.+..+..+++..|. ++...- .+-..+..||.|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 88888887665421 2455666777777776 21 1121111344556666665553 332210 111345677888
Q ss_pred EccccchhhhhhHHHHhhhhhccCeeEEeeccc-cchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhh
Q 038611 614 SLYFGWEALEETVEETGRLSDRLDTFEGHFSKL-NNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIAN 692 (837)
Q Consensus 614 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 692 (837)
....+...++..+..++.=+.+|+.|.++.|.. ++.-...-.....+ ++.+.+..|....
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~-------------------Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH-------------------LERLDLEECGLIT 360 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh-------------------hhhhcccccceeh
Confidence 876666666667777776547788887776532 11000000011111 2222222221000
Q ss_pred hccCCC-CcccCCCCCcEEEEeeecchhhhhhcccccccccc-cccccccccEEEEecCCCCCcchhhhhhhhcCCccEE
Q 038611 693 KICEKE-KPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVN-IGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECL 770 (837)
Q Consensus 693 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L 770 (837)
+... ..-..++.|++|.++.|..+++.- ...+.. ..... .|..+.+.+|+.+++- .+..+..+++||.+
T Consensus 361 --d~tL~sls~~C~~lr~lslshce~itD~g-----i~~l~~~~c~~~-~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 361 --DGTLASLSRNCPRLRVLSLSHCELITDEG-----IRHLSSSSCSLE-GLEVLELDNCPLITDA-TLEHLSICRNLERI 431 (483)
T ss_pred --hhhHhhhccCCchhccCChhhhhhhhhhh-----hhhhhhcccccc-ccceeeecCCCCchHH-HHHHHhhCccccee
Confidence 0000 002235778888888777554320 001111 12344 7888888888887775 45567778888888
Q ss_pred EeccccchhhhhccccchhhhhcccccccccccCCCcceEeccc
Q 038611 771 EVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHY 814 (837)
Q Consensus 771 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 814 (837)
++.+|..+..-+.. ....++|+++...+..
T Consensus 432 ~l~~~q~vtk~~i~--------------~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 432 ELIDCQDVTKEAIS--------------RFATHLPNIKVHAYFA 461 (483)
T ss_pred eeechhhhhhhhhH--------------HHHhhCccceehhhcc
Confidence 88888776544221 1344677777665544
No 88
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=7.9e-07 Score=68.86 Aligned_cols=57 Identities=33% Similarity=0.410 Sum_probs=31.6
Q ss_pred cccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCc
Q 038611 491 ILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRC 548 (837)
Q Consensus 491 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~ 548 (837)
+|++|++++| .+..+|...|.++++|++|++++|.+..+| ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 555555555555556666666655555554 34455555555555554
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.5e-05 Score=88.81 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=106.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCC-CCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNK-FNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.++||. +..++.|.+++..+.+ +.+.++|..|+||||+|+.+++.+--.... ....-. ..++.-...+.|..
T Consensus 16 ~dviGQ--e~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQ--EHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 378997 6678888888887765 677999999999999999998765210000 000000 01111111111210
Q ss_pred HhcCCC---C-CCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEe-CChhHhh
Q 038611 186 ALKESL---P-ENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITT-RSYRVCR 254 (837)
Q Consensus 186 ~l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTt-R~~~v~~ 254 (837)
.-..+. . ......+.+..+++... .++.-++|||+++.. ...+.+...+......+++|++| ....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 000000 0 00011122222322221 244558899999864 23444433332223345555544 4344321
Q ss_pred --hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 255 --SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 255 --~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
...+..+++++++.++....+.+.+....... ..+....|++.++|.+--+..+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22344499999999999999888765442222 3457788999999977555444
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.8e-05 Score=88.89 Aligned_cols=181 Identities=13% Similarity=0.150 Sum_probs=103.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc------------------CCCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 168 (837)
.++||. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++..--.. +.|.-++.+
T Consensus 16 ~divGq--~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQ--APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 378998 6678888888887765 5679999999999999999998762110 011112333
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivT 246 (837)
..+....+.++ +++++.+... -..++.-++|+|+++.. ...+.+...+......+++|++
T Consensus 94 daas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 32222222221 1222221110 01355668899999864 2333333222222334555554
Q ss_pred eC-ChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 247 TR-SYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 247 tR-~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
|. ...+... ..+..+++.+++.++....+.+.+......- ..+....|++.++|.+.-+..+
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 44 3333221 1233388999999998887776654332222 3445778899999987554443
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.1e-05 Score=88.25 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=101.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|+ +..++.+..++..+.+ +.+.++|+.|+||||+|+.+++...-. -|.... .++.-...+.+...
T Consensus 16 ~dIIGQ--e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-------~~~~~~-~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQ--ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-------NPKDGD-CCNSCSVCESINTN 85 (605)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-------CCCCCC-CCcccHHHHHHHcC
Confidence 378998 6678888888877654 689999999999999999999876210 011110 11111111111111
Q ss_pred hcCCC---C-CCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE-EeCChhHhh-
Q 038611 187 LKESL---P-ENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI-TTRSYRVCR- 254 (837)
Q Consensus 187 l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv-TtR~~~v~~- 254 (837)
...+. . ......+.+..+...+. .+++-++|+|+++.. ..+..+...+......+.+|+ |+....+..
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 00000 0 00001111222222111 233446999999753 233333332222123444444 544444432
Q ss_pred -hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 255 -SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 255 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
...+..+++.+++.++....+...+......- -.+.+..+++.++|.+--+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDG 217 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHH
Confidence 12244489999999999988887664332122 3456788999999966433
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=1.6e-05 Score=89.99 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=105.0
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc------------------CCCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 168 (837)
.+++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++.+.-.. +.|--++.+
T Consensus 16 ddIIGQ--e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQ--EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 378998 6778888888887765 5789999999999999999988651110 001011222
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCcc--ccccccCCCCCCCCcE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAFP--LEKVGIPEPNKENGCK 242 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~s~ 242 (837)
..+....+ ..+..++... ..+++-++|||+++.... ...+...+......++
T Consensus 94 daAs~~gV----------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 94 DAASNTGI----------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred eccccCCH----------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 21111111 1122222211 134667899999975432 2223222222223456
Q ss_pred EEEEeCCh-hHhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 243 LVITTRSY-RVCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 243 iivTtR~~-~v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+|++|.+. .+.. ...+..+.+.+++.++....+.+.+......- ..+....|++.++|.+.-+..+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 66666443 2221 12233388999999999999888775442222 35678899999999886554443
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=2.5e-05 Score=83.44 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=108.9
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
..++|. ++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..-... ..+... ............+.|..
T Consensus 23 ~~l~Gh--~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGH--EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 378998 6778888888887764 6799999999999999999998762210 001111 00111111112223322
Q ss_pred H-------hcCC--CC----CCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcE-EEE
Q 038611 186 A-------LKES--LP----ENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCK-LVI 245 (837)
Q Consensus 186 ~-------l~~~--~~----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~-iiv 245 (837)
. +... .. ...-..+.+..+.+.+. .+++-++|+|+++... ..+.+...+........ |++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 1 1000 00 01111233344444432 3567789999998642 23333222211122344 445
Q ss_pred EeCChhHhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 246 TTRSYRVCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 246 TtR~~~v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
|++...+.. ...+..+++.+++.++...++.+.. .... - ..+.+..|++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~-~~~~-~---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG-SSQG-S---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh-cccC-C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 544433321 1234449999999999999998742 2211 1 24557889999999998776554
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=1.8e-05 Score=80.06 Aligned_cols=171 Identities=12% Similarity=0.155 Sum_probs=97.4
Q ss_pred cccccchhHHHHHHHHHhcC-CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 109 TLVGEKTKKVVEIIWENLMG-DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
.+++...+.....+.++... .....+.|+|..|+|||+||+.+++.... .. ..+.+++..+... . +
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~~------~----~ 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPLL------A----F 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhHH------H----H
Confidence 44432223445555555442 34578899999999999999999997522 12 2345555433110 0 0
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcccc--ccccCCCC-CCCCc-EEEEEeCChhHhh--------h
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLE--KVGIPEPN-KENGC-KLVITTRSYRVCR--------S 255 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~l~~~~~~-~~~~s-~iivTtR~~~v~~--------~ 255 (837)
. . ....-+||+||++....+. .+...+.. ...+. .||+|++...... .
T Consensus 86 ------------------~-~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr 145 (227)
T PRK08903 86 ------------------D-F-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTR 145 (227)
T ss_pred ------------------h-h-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHH
Confidence 0 1 1223478899997542211 12211211 12233 4667766533221 2
Q ss_pred CCc-ceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhc
Q 038611 256 MKC-KQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASM 315 (837)
Q Consensus 256 ~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 315 (837)
+.. ..+++.++++++-..++.+.+......- -++....+++.+.|.+..+..+...+
T Consensus 146 ~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 146 LGWGLVYELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222 3389999999887777766543222222 45678888889999998887776554
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.20 E-value=4.7e-05 Score=83.01 Aligned_cols=181 Identities=13% Similarity=0.195 Sum_probs=105.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc-------------------CCCCeEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIW 167 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~w 167 (837)
..++|. +..++.+.+++..+.. +.+.++|+.|+||||+|+.+........ .+++. .+
T Consensus 14 ~~iig~--~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 14 EDVIGQ--EHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 478998 7788888888877664 5788999999999999999988752110 02222 23
Q ss_pred EEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE
Q 038611 168 VTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI 245 (837)
Q Consensus 168 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv 245 (837)
+..+....... .+++...+... .+ .+++-++|+|+++.. .....+...+......+.+|+
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~----------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA----------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC----------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 32221111111 12222221110 01 234558899998654 223333333322234556666
Q ss_pred EeCChh-HhhhC--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 246 TTRSYR-VCRSM--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 246 TtR~~~-v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+|.+.. +.... .+..+++.+++.++....+...+......- -.+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 665543 22211 223388899999999888887664332222 34678889999999887665543
No 96
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.5e-06 Score=67.33 Aligned_cols=60 Identities=37% Similarity=0.480 Sum_probs=56.0
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCC
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAI 527 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 527 (837)
+++.+.+.+|.+..+|...|..+++|++|++++| .+..+++..|.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999999999999999999999988 78999999999999999999999874
No 97
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=3.2e-05 Score=85.82 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=110.7
Q ss_pred ccccchhHHHHHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 110 LVGEKTKKVVEIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
++|...+........+.... ...-+.|+|..|+|||+|++++++.... ...-..+++++. .++...+...+
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~------~~f~~~~~~~l 190 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSG------DEFARKAVDIL 190 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHH
Confidence 44653333344444444332 2356899999999999999999997632 222334556543 45666666666
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---cc-cccccCCCC-CCCCcEEEEEeCChh---------Hh
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---PL-EKVGIPEPN-KENGCKLVITTRSYR---------VC 253 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~~s~iivTtR~~~---------v~ 253 (837)
+... .......+.+ . ..-+|||||+.... .+ +.+...+.. ...|..||+|+.... +.
T Consensus 191 ~~~~-------~~~~~~~~~~-~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 191 QKTH-------KEIEQFKNEI-C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHhh-------hHHHHHHHHh-c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 4310 1222333333 2 34588999997532 12 222222211 133456888876532 23
Q ss_pred hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 254 RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 254 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
.+..... +.+++++.++-.+++.+.+...... ...-+++...|++.++|.|-.+.-+..
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 3333344 7899999999999999887543210 012467899999999999987766653
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=5.9e-05 Score=73.84 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=90.4
Q ss_pred HHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc-------------------CCCCeEEEEEe-CCCcCHHHH
Q 038611 121 IIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIWVTV-SQPLDLIKL 179 (837)
Q Consensus 121 ~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~v-s~~~~~~~~ 179 (837)
.+.+.+..+++ +.+.++|+.|+||||+|+.+.+...... .+.|. .++.. +.......
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 45566666665 6799999999999999999988762110 11122 12211 11111111
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCCh-hHhhhC
Q 038611 180 QTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY-RVCRSM 256 (837)
Q Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~ 256 (837)
.+++.+.+... . ..+.+-++|+||++... ..+.+...+......+.+|++|++. .+....
T Consensus 81 i~~i~~~~~~~----------------~-~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 81 VRELVEFLSRT----------------P-QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHHHccC----------------c-ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 11122221110 0 13456789999997542 2333433333323455666666553 222211
Q ss_pred --CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 257 --KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 257 --~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
.+..+.+.+++.++..+.+.+. +. ..+.+..|++.++|.|..
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-gi--------~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-GI--------SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-CC--------CHHHHHHHHHHcCCCccc
Confidence 2233899999999998888776 21 245688999999998853
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.6e-05 Score=85.63 Aligned_cols=197 Identities=11% Similarity=0.131 Sum_probs=107.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE-eCCCcCHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLDLIKLQTEIAT 185 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~ 185 (837)
.+++|. +..++.|..++.++.+ +.+.++|+.|+||||+|+.+++...-. ...+...|.. +..+...-...+.+..
T Consensus 16 ~eiiGq--~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQ--EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccCh--HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhc
Confidence 478997 6677888888887765 568899999999999999999876211 1111111110 0011111111111111
Q ss_pred HhcCCC----CCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEe-CChhHhh
Q 038611 186 ALKESL----PENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITT-RSYRVCR 254 (837)
Q Consensus 186 ~l~~~~----~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTt-R~~~v~~ 254 (837)
....+. .......+.+..+.+.+ ..+.+-++|+|+++... .++.+...+......+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 100000 00001122222333333 13456688999997643 3444443333323455555544 4444432
Q ss_pred hCC--cceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 255 SMK--CKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 255 ~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
... +..+++.+++.++....+...+......- ..+.+..|++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 221 22389999999999888887764332122 456789999999997754444
No 100
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4.9e-06 Score=96.72 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=45.5
Q ss_pred ccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc-ccChhhhcccccceecccCccccCCCc-cccccCCCCEEecc
Q 038611 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE-VLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLR 569 (837)
Q Consensus 492 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~ 569 (837)
++.|+|++|.....+|.. +..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+| .++++++|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 344444444222233333 244555555555555443 444445555555555555444333444 44455555555555
Q ss_pred CCcCc-cccccccCC-CCCCEEeccCC
Q 038611 570 GTSIE-EVPEGMQML-ENLSHLYLYSP 594 (837)
Q Consensus 570 ~~~i~-~lp~~~~~l-~~L~~L~l~~~ 594 (837)
+|.+. .+|..++.+ .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 54433 344444332 23344444443
No 101
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=4.5e-06 Score=97.07 Aligned_cols=86 Identities=29% Similarity=0.431 Sum_probs=49.5
Q ss_pred CcEEEecCCCCc-ccChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCc-cccccccCCCCCCEEeccC
Q 038611 517 LKILNLSFTAIE-VLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIE-EVPEGMQMLENLSHLYLYS 593 (837)
Q Consensus 517 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~ 593 (837)
++.|+|++|.+. .+|..++.+++|+.|+|++|.....+| .++.+++|++|+|++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455666666554 455566666666666666654444555 5666666666666666554 4555566666666666666
Q ss_pred CCCC-CCCCC
Q 038611 594 PPLK-ELPAG 602 (837)
Q Consensus 594 ~~l~-~~p~~ 602 (837)
|.+. .+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 6544 34443
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5e-05 Score=85.94 Aligned_cols=175 Identities=16% Similarity=0.193 Sum_probs=101.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc------------------CCCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 168 (837)
.+++|. +..++.+..++..+++ +.+.++|+.|+||||+|+.+++...-.. +.|.-++++
T Consensus 16 ~divGq--~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQ--EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 378998 6677888888887765 5678999999999999999988762100 001112222
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCK 242 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ 242 (837)
..+.... .+.+..+.... ..+++-++|+|+++... ..+.+...+......+.
T Consensus 94 ~~~~~~~----------------------vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 94 DAASNTQ----------------------VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eccccCC----------------------HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 2111111 11122222222 13566789999998643 23333333322233455
Q ss_pred EEEEe-CChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 243 LVITT-RSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 243 iivTt-R~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
+|++| ..+.+... ..+..+++.+++.++....+.+.+....... ..+....|++.++|.+--+.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al 218 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDAL 218 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 55544 43333211 1133389999999999988877664332222 34567889999999775433
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=5.2e-05 Score=76.71 Aligned_cols=151 Identities=16% Similarity=0.220 Sum_probs=91.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
...+.|+|..|+|||.||+++++.... . ...++|++..+ +... ...+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~-~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~- 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ-R--GEPAVYLPLAE------LLDR------------------GPELLDNLE- 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-C--CCcEEEeeHHH------HHhh------------------hHHHHHhhh-
Confidence 367899999999999999999987622 2 24567776432 1110 012233332
Q ss_pred CCeEEEEEeCCCCC---ccccc-cccCCCC-CCCCcEEEEEeCChhH---------hhhCCcce-EEeccCCHHhHHHHH
Q 038611 211 KAKFVLILDDMWEA---FPLEK-VGIPEPN-KENGCKLVITTRSYRV---------CRSMKCKQ-VEVELLSKEEAFNLF 275 (837)
Q Consensus 211 ~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~~s~iivTtR~~~v---------~~~~~~~~-~~l~~L~~~~~~~Lf 275 (837)
+- =++|+||+... ..|.. +...+.. ...|..||+|++...- ..+..... +++.+++.++-...+
T Consensus 97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 11 26789999733 34433 2222211 1346678888876332 22223334 889999999999998
Q ss_pred HHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 276 IDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
+.++......- -.++...|++++.|..-++..+-.
T Consensus 176 ~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 176 QLRASRRGLHL---TDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHH
Confidence 86553332222 357788888888887665554443
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.1e-05 Score=82.29 Aligned_cols=178 Identities=8% Similarity=0.161 Sum_probs=99.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhh-----cCCCCeE-EEEEeCCCcCHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNVV-IWVTVSQPLDLIKLQ 180 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~vs~~~~~~~~~ 180 (837)
.+++|. +..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|... +.+......+... .
T Consensus 17 ~~iig~--~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 17 DDVVGQ--SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred HhcCCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 378898 6678888888877665 589999999999999999998875210 0112111 1111111111111 1
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEe-CChhHhhh--
Q 038611 181 TEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITT-RSYRVCRS-- 255 (837)
Q Consensus 181 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTt-R~~~v~~~-- 255 (837)
+++++++... .+ .+++-++|+|+++... .+..+...+......+.+|++| ....+...
T Consensus 94 ~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 94 RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1222221100 01 2345689999987542 2333322222212334555544 33333211
Q ss_pred CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 256 MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 256 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
..+..++..+++.++....+.+.+......- -.+.+..|+..++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 1223389999999999988887664332222 3567888888999866543
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.1e-05 Score=85.28 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCccH-----HHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQTEIATALKESLPENEDK-----VSRAG 202 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~-----~~~~~ 202 (837)
.-..++|+|++|+|||||++.+++.+. ..+|+..+||.+.+. .++.++++.+...+-....+.... ...+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 457899999999999999999999873 347999999998865 689999999854432221111111 11111
Q ss_pred HHH-HHHhcCCeEEEEEeCCCCC
Q 038611 203 RLL-GMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 203 ~l~-~~l~~~k~~LlVlDdv~~~ 224 (837)
... .....+++.+|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222 2224689999999999754
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=8.6e-05 Score=85.16 Aligned_cols=186 Identities=13% Similarity=0.146 Sum_probs=102.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|. +..++.+..++..+++ +.+.++|+.|+||||+|+.++...--...... +-.+ ......
T Consensus 18 ~dIiGQ--e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC-------~~C~~~--- 82 (725)
T PRK07133 18 DDIVGQ--DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPC-------QECIEN--- 82 (725)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCch-------hHHHHh---
Confidence 378998 6678888888887664 67789999999999999999876521100000 0000 000000
Q ss_pred hcCCC-----C-CCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcE-EEEEeCChhHh
Q 038611 187 LKESL-----P-ENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCK-LVITTRSYRVC 253 (837)
Q Consensus 187 l~~~~-----~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~-iivTtR~~~v~ 253 (837)
.+... . ........+..+.+.+. .+++-++|+|+++.. ..+..+...+-.....+. |++|++...+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000 0 00001122223322221 356668899999754 234443332222122334 44565555553
Q ss_pred hh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 254 RS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 254 ~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.. ..+..+++.+++.++....+...+....... ..+.+..|++.++|.+--+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2344599999999999988877653332222 3456788999999977544333
No 107
>PTZ00202 tuzin; Provisional
Probab=98.04 E-value=8.3e-05 Score=78.68 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=96.6
Q ss_pred ccCCCccccccchhHHHHHHHHHhcC---CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 103 VMLPTETLVGEKTKKVVEIIWENLMG---DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 103 ~~~~~~~~vGr~~~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
.|.+.+.|+|| +++.+.+...+.+ +..+++.|+|++|+|||||++.+.... + ....+++.. +..++
T Consensus 257 lPa~~~~FVGR--eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~--~~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSR--EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G--MPAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCc--HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C--ceEEEECCC---CHHHH
Confidence 34456699999 6677777777753 235699999999999999999998764 1 112333322 67999
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHH----HHHHhc-CCeEEEEEeCCCCCccccccc---cCCCCCCCCcEEEEEeCChh
Q 038611 180 QTEIATALKESLPENEDKVSRAGRL----LGMLKA-KAKFVLILDDMWEAFPLEKVG---IPEPNKENGCKLVITTRSYR 251 (837)
Q Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~~~l----~~~l~~-~k~~LlVlDdv~~~~~~~~l~---~~~~~~~~~s~iivTtR~~~ 251 (837)
++.|+.+||.+.. ....+....+ .+.... +++.+||+- +.+-..+..+. ..+...-.-|.|++----++
T Consensus 326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 9999999997432 2222222333 222223 566666654 22222222110 11222244567776555444
Q ss_pred HhhhCCcce----EEeccCCHHhHHHHHHHH
Q 038611 252 VCRSMKCKQ----VEVELLSKEEAFNLFIDR 278 (837)
Q Consensus 252 v~~~~~~~~----~~l~~L~~~~~~~Lf~~~ 278 (837)
.......-+ |.+++++.++|...-.+.
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 422222211 789999999998877654
No 108
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.03 E-value=6.6e-05 Score=76.34 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=116.5
Q ss_pred cccccch-hHHHHHHHHHhcC---CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCeEEEEEeCCCcCHHHHHH
Q 038611 109 TLVGEKT-KKVVEIIWENLMG---DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 109 ~~vGr~~-~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~ 181 (837)
..+|-.. .+.++.+.+.+.. ...+-+.|||.+|.|||++++++.+......+. --.|+.|.....++...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 4455433 3445555555543 456789999999999999999999876322111 11477788888999999999
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-----cccccc---CCCCCCCCcEEEEEeCChh--
Q 038611 182 EIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-----LEKVGI---PEPNKENGCKLVITTRSYR-- 251 (837)
Q Consensus 182 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----~~~l~~---~~~~~~~~s~iivTtR~~~-- 251 (837)
.|+.+++.+................-+..-+--+||+|.+++.-. -.++.. .+.+.-.-+-|.|-|+..-
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA 194 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH
Confidence 999999998765555544444444444444566789999986311 111111 1111122334555555432
Q ss_pred ------HhhhCCcceEEeccCCHH-hHHHHHHHHh---CCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 252 ------VCRSMKCKQVEVELLSKE-EAFNLFIDRV---GSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 252 ------v~~~~~~~~~~l~~L~~~-~~~~Lf~~~~---~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+..... +.++....+ +...|+.... .-..... -...+++..|...++|+.--+..+
T Consensus 195 l~~D~QLa~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 195 LRTDPQLASRFEP--FELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred hccCHHHHhccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHHH
Confidence 2222221 455555543 3444443321 1111111 125789999999999987554443
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.7e-05 Score=84.23 Aligned_cols=195 Identities=14% Similarity=0.186 Sum_probs=106.4
Q ss_pred ccccccchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.|...+..+. .+.+.++|+.|+||||+|+.+++..--. ...+ ...++.-...+.|...
T Consensus 16 ~dIiGQ--e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~-------~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQ--ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE-TAPT-------GEPCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCC--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc-CCCC-------CCCCcccHHHHHHhcC
Confidence 378897 666777888887766 5888899999999999999999876211 0000 0001111111111111
Q ss_pred hcCCC---C-CCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCC-hhHhhh
Q 038611 187 LKESL---P-ENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRS-YRVCRS 255 (837)
Q Consensus 187 l~~~~---~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~ 255 (837)
-..+. . ......+.+..+.+.+ ..+++-+||+|+++.. ...+.+...+........+|++|.. ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 00000 0 0000011111221111 1356678999999764 2333343333222234455554444 444322
Q ss_pred --CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch-hHHHHHHHhc
Q 038611 256 --MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP-LAIVTVAASM 315 (837)
Q Consensus 256 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~l 315 (837)
..+..+++.+++.++....+.+.+......- ..+.+..|++.++|.+ .|+..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1233489999999999988887664432222 4567888999999965 5666665444
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.0001 Score=87.05 Aligned_cols=174 Identities=13% Similarity=0.118 Sum_probs=103.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC---------------------CCCeE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN---------------------KFNVV 165 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---------------------~f~~~ 165 (837)
.+++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++.+.-... +++ +
T Consensus 15 ~eiiGq--e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 15 AEVIGQ--EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 378998 6677888888887765 57899999999999999999887621100 111 1
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCC
Q 038611 166 IWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKEN 239 (837)
Q Consensus 166 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 239 (837)
+++.......+ +.+..+.+.+ ..++.-++|||+++.. ...+.+...+..-..
T Consensus 92 ~eidaas~~~V----------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 92 TEIDAASHGGV----------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred EEecccccCCH----------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 22221111111 1112222111 1345567889999864 333334333332234
Q ss_pred CcEEEE-EeCChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 240 GCKLVI-TTRSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 240 ~s~iiv-TtR~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
.+.+|+ ||....+... ..+..|++.+++.++...++.+.+....... -.+....|++.++|.+..+.
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 455554 5444444432 2344499999999999988887664332222 34566789999999885443
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00019 Score=80.14 Aligned_cols=182 Identities=11% Similarity=0.111 Sum_probs=104.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC-C----------------CC-eEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN-K----------------FN-VVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~----------------f~-~~~wv 168 (837)
.+++|. +..++.+...+..+.. +++.++|+.|+||||+|+.+++..--... . +. -++.+
T Consensus 14 deiiGq--e~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQ--ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 378997 6677888888877765 47789999999999999999887521100 0 00 12222
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivT 246 (837)
..+....+..+. +++..... .. ..+++-++|+|+++... ..+.+...+......+.+|++
T Consensus 92 daas~~gId~IR-elie~~~~----------------~P-~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 92 DAASNRGIDDIR-ELIEQTKY----------------KP-SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred ccccccCHHHHH-HHHHHHhh----------------Cc-ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 221111122211 11111100 00 02456688999997542 233333222222334566666
Q ss_pred eCCh-hHhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 247 TRSY-RVCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 247 tR~~-~v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
|.+. .+.. ...+..+++.+++.++....+.+.+......- -.+.+..|++.++|.+.-+....
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 6553 2211 11234499999999999998887665432222 35678899999999886555543
No 112
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00014 Score=83.70 Aligned_cols=179 Identities=12% Similarity=0.167 Sum_probs=105.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHh--------------------hcCCCCeEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQK--------------------ETNKFNVVI 166 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~--------------------~~~~f~~~~ 166 (837)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.++....- ...+|+. .
T Consensus 17 ~~viGq--~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 17 ESVVGQ--EALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 378998 6778888888887765 56889999999999999998886520 0112332 2
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEE
Q 038611 167 WVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLV 244 (837)
Q Consensus 167 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ii 244 (837)
.+..+...+..++. .++.++... .+ .+++-++|+|+++... .++.+...+..-...+.+|
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~----------------P~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIP----------------PQ-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhC----------------cc-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22222222222221 122221110 01 2345578999987643 3444433332223345555
Q ss_pred E-EeCChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 245 I-TTRSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 245 v-TtR~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
+ ||+...+... ..+..+++.+++.++....+.+.+....... -.+.+..|++.++|..--+..
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 4 5554444332 2244489999999999998887665432222 345688999999997754433
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.98 E-value=0.00015 Score=80.29 Aligned_cols=179 Identities=16% Similarity=0.216 Sum_probs=102.1
Q ss_pred ccccchhHHHHHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 110 LVGEKTKKVVEIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
++|.........+..+.... ....+.|+|..|+|||+||+++++.... ...-..++++++ .++..++...+
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~ 185 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNAL 185 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHH
Confidence 45654333344444444332 2357899999999999999999998732 222234667643 33444555555
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc---cc-ccccCCCC-CCCCcEEEEEeCCh-h--------Hh
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP---LE-KVGIPEPN-KENGCKLVITTRSY-R--------VC 253 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~-~l~~~~~~-~~~~s~iivTtR~~-~--------v~ 253 (837)
... . ...+.+.+ . +.-+|||||++.... +. .+...+.. ...+..+|+||... . +.
T Consensus 186 ~~~-----~----~~~~~~~~-~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 186 RNN-----K----MEEFKEKY-R-SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HcC-----C----HHHHHHHH-H-hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 321 1 12223333 2 234889999975321 11 12111110 12345677877642 1 22
Q ss_pred hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 254 RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 254 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
..+.... +.+.+.+.++-..++.+.+......- -.++...|++.+.|..-.+.
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 3333333 88999999999999998876542222 35678888888888765433
No 114
>PRK06620 hypothetical protein; Validated
Probab=97.96 E-value=6.1e-05 Score=74.80 Aligned_cols=158 Identities=15% Similarity=0.085 Sum_probs=90.7
Q ss_pred cccccchhHHHHHHHHHhcCC--CC--CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGD--KA--PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~--~~--~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
-++|...+.....+.++.... +. +.+.|+|++|+|||+|++.+++.. .. .++. ..+.
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~--------- 78 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF--------- 78 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh---------
Confidence 456653344555565555421 22 679999999999999999887653 11 1211 0000
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCC-CCCCCcEEEEEeCChhH-------hhhC
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEP-NKENGCKLVITTRSYRV-------CRSM 256 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~-~~~~~s~iivTtR~~~v-------~~~~ 256 (837)
.. . .+ . ..-++++||++...+ ..+...+. -...|..||+|++.... ..++
T Consensus 79 ----------~~------~---~~-~-~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 79 ----------NE------E---IL-E-KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred ----------ch------h---HH-h-cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 00 0 01 1 235788999974321 11111111 01446689998885432 3334
Q ss_pred Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 257 KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 257 ~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
.... +++++++.++-..++++.+....-.- -+++...|++.+.|.--.+.-
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l---~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSISSVTI---SRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHH
Confidence 4443 89999999998888887765332122 356788888888775544433
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.95 E-value=6.5e-05 Score=81.77 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=93.9
Q ss_pred cccccchhHHHHHHHHHhc----C---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 109 TLVGEKTKKVVEIIWENLM----G---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
.+.|. ++.+++|.+.+. . ..++-+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 123 di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~--- 189 (364)
T TIGR01242 123 DIGGL--EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG--- 189 (364)
T ss_pred HhCCh--HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch---
Confidence 67787 556666665542 1 125679999999999999999999875 2222 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc----------------cccccccCCC--CC
Q 038611 176 LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF----------------PLEKVGIPEP--NK 237 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------------~~~~l~~~~~--~~ 237 (837)
..+.... ++ ........+.+......+.+|+|||++... .+..+...+. ..
T Consensus 190 -~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111111 11 111222333333334567899999997431 0111111111 11
Q ss_pred CCCcEEEEEeCChhH-----hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 238 ENGCKLVITTRSYRV-----CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 238 ~~~s~iivTtR~~~v-----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
..+..||.||..... ........ +.+...+.++..++|...+........ .....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 345678888875432 22122233 889999999999999887644321110 11456777787764
No 116
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=1.1e-06 Score=96.54 Aligned_cols=128 Identities=25% Similarity=0.300 Sum_probs=93.5
Q ss_pred CCCcEEEecCCCCcccChhhhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccC
Q 038611 515 HGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYS 593 (837)
Q Consensus 515 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~ 593 (837)
..|.+.+.++|.+..+-.++.-++.|+.|+|++| .+.....+..|++|++|||+.|.+..+|. ++..+. |..|.+++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4567777778877777778888888888888884 45555567788888888888888887775 233444 88888888
Q ss_pred CCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeecccc
Q 038611 594 PPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 594 ~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
|.++.+- + +.+|++|+.|++..+.-.....+..+..| ..|+.|.+.+|.+.
T Consensus 242 N~l~tL~-g-ie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTLR-G-IENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhhh-h-HHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCccc
Confidence 8887773 4 68888888888855443344455667777 77888888777653
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=9.7e-05 Score=84.40 Aligned_cols=195 Identities=11% Similarity=0.157 Sum_probs=104.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE-eCCCcCHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLDLIKLQTEIAT 185 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-vs~~~~~~~~~~~i~~ 185 (837)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++.+.-. ...+.-.|.. +...++.-...+.+..
T Consensus 16 ~eivGQ--e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQ--EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhc
Confidence 378998 6677888888877765 568999999999999999999876211 1111001110 0011111111111111
Q ss_pred HhcCCC----CCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEE-EEeCChhHhh
Q 038611 186 ALKESL----PENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLV-ITTRSYRVCR 254 (837)
Q Consensus 186 ~l~~~~----~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~ 254 (837)
.-..+. .......+.+..+.+.+ ..+.+-++|+|+++... ..+.+...+..-...+.+| +|++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 000000 00011122233333332 13456678999987643 2333333332222344444 4544444432
Q ss_pred h--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 255 S--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 255 ~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
. -.+..+++.+++.++....+.+.+......- ..+.+..|++.++|..--+
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHH
Confidence 2 2244499999999998888877654322112 3567889999999965533
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00027 Score=80.20 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=103.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++.+.-.. ..+ +-.++. -...+.|...
T Consensus 13 ~eivGq--~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~---~~pCg~----C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQ--EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ-GPT---ATPCGV----CESCVALAPN 82 (584)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCC---CCcccc----cHHHHHhhcc
Confidence 378998 6678888888888765 5678999999999999999998752110 000 000000 0011111100
Q ss_pred hc-------CCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEE-EEeCChhH
Q 038611 187 LK-------ESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLV-ITTRSYRV 252 (837)
Q Consensus 187 l~-------~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~ii-vTtR~~~v 252 (837)
-+ .+... ....+.+..+.... ..+++-++|+|+++.. ...+.+...+..-...+.+| +||....+
T Consensus 83 ~~~~~dvieidaas-~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 83 GPGSIDVVELDAAS-HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred cCCCceEEEecccc-ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 00 00000 00111112222111 1345668899999754 23333333332222344444 55555544
Q ss_pred hhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHHHHHH
Q 038611 253 CRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIVTVAA 313 (837)
Q Consensus 253 ~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~ 313 (837)
... ..+..+++.+++.++..+.+.+.+......- -.+....|++.++|.+- |+..+-.
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 2244599999999999888877664432222 34567888999999775 4444433
No 119
>PF14516 AAA_35: AAA-like domain
Probab=97.94 E-value=0.00094 Score=71.36 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=112.5
Q ss_pred CCccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-----cCHHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LDLIKLQ 180 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~ 180 (837)
.++..|+|. ...+++.+.+.+. ...+.|.|+-.+|||+|...+.+.... . -..++++++..- .+..+++
T Consensus 9 ~~~~Yi~R~--~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~-~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 9 DSPFYIERP--PAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--Q-GYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCcccCch--HHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--C-CCEEEEEEeecCCCcccCCHHHHH
Confidence 344567884 2344555555542 479999999999999999999988732 2 344668876542 2455555
Q ss_pred HHHH----HHhcCCCCC-------CccHHHHHHHHHHHHh--cCCeEEEEEeCCCCCccc----cccccCCC--------
Q 038611 181 TEIA----TALKESLPE-------NEDKVSRAGRLLGMLK--AKAKFVLILDDMWEAFPL----EKVGIPEP-------- 235 (837)
Q Consensus 181 ~~i~----~~l~~~~~~-------~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~----~~l~~~~~-------- 235 (837)
+.++ ++++.+..- ..........+.+.++ .+++.+|+||+|+..... .++...+.
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 5544 444432110 0011111111222222 268999999999754221 11111100
Q ss_pred CCCCCc--EEEEEeCChhHhhhC-----Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 236 NKENGC--KLVITTRSYRVCRSM-----KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 236 ~~~~~s--~iivTtR~~~v~~~~-----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
...... -|++.+......... .... ++|++++.+|+..|..+.-..- -....++|...+||+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHH
Confidence 000111 122222111111111 1122 8999999999999988753221 223389999999999999
Q ss_pred HHHHHHhccCC
Q 038611 308 IVTVAASMSGE 318 (837)
Q Consensus 308 i~~~~~~l~~~ 318 (837)
+..++..+..+
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999999663
No 120
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=6.6e-05 Score=85.60 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=107.3
Q ss_pred cccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCcCHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
+++|. +..++.|..++..+++ ..+.++|+.|+||||+|+.+++.+.-....-. ...+ +.+..-.-.+.|...
T Consensus 25 dliGq--~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~g 98 (598)
T PRK09111 25 DLIGQ--EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIMEG 98 (598)
T ss_pred HhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhcC
Confidence 78998 6788888888887765 57999999999999999999987521100000 0000 001111111222211
Q ss_pred hcCCC----CCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEE-EeCChhHhhh
Q 038611 187 LKESL----PENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVI-TTRSYRVCRS 255 (837)
Q Consensus 187 l~~~~----~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iiv-TtR~~~v~~~ 255 (837)
-..+. .......+.+..+.... ..+++-++|+|+++... ..+.+...+..-...+.+|+ ||....+...
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 11000 00001122222232222 13455678999997543 23333333322233455555 4444443222
Q ss_pred --CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 256 --MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 256 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
..+..+++.+++.++....+.+.+......- -.+....|++.++|.+.-+....
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1233489999999999999988765432222 34678889999999886655443
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00023 Score=79.03 Aligned_cols=177 Identities=13% Similarity=0.180 Sum_probs=100.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc--------------------CCCCeEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET--------------------NKFNVVI 166 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------------------~~f~~~~ 166 (837)
.+++|. +..++.+..++..+.+ +.+.++|+.|+||||+|+.+++...-.. .+++ .+
T Consensus 17 ~diiGq--~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQ--DAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 488998 6778888888887765 6788999999999999999988752110 0111 11
Q ss_pred EEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEE
Q 038611 167 WVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLV 244 (837)
Q Consensus 167 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ii 244 (837)
++.......+.++ +++.+.+. ..-..+.+-++|+|+++... ..+.+...+......+.+|
T Consensus 94 ~i~g~~~~gid~i-r~i~~~l~-----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 94 EIDGASHRGIEDI-RQINETVL-----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EeeccccCCHHHH-HHHHHHHH-----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 1111111111111 11111110 00013566788999987542 2333332222223355555
Q ss_pred EEe-CChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 245 ITT-RSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 245 vTt-R~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
++| +...+... ..+..+++.++++++....+.+.+....... -.+.+..|++.++|.+--+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDA 219 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 555 33333221 1233489999999999888887654332122 3567889999999976433
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.0002 Score=79.47 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=103.3
Q ss_pred ccccchhHHHHHHHHHhcCC-CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 110 LVGEKTKKVVEIIWENLMGD-KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
++|...+.......++..+. ...-+.|+|.+|+|||+||+++++.... ...-..++|++. .++..++...+.
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~ 180 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMK 180 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHh
Confidence 34643333444444544432 2456999999999999999999998732 222235677754 345556655553
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---cc-cccccCCCC-CCCCcEEEEEeC-ChhH--------hh
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---PL-EKVGIPEPN-KENGCKLVITTR-SYRV--------CR 254 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~~s~iivTtR-~~~v--------~~ 254 (837)
.. . .....+.+ ..+.-+|++||++... .+ ..+...+.. ...|..||+||. .+.- ..
T Consensus 181 ~~-----~----~~~f~~~~-~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 181 EG-----K----LNEFREKY-RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred cc-----c----HHHHHHHH-HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 21 1 11222222 2245689999997431 11 122111110 123456888875 3221 12
Q ss_pred hCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 255 SMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 255 ~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
++.... +.+++.+.+.-..++++.+......- -.++...|++.+.|.--.+.
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHH
Confidence 233333 78999999999999988875442222 35678888888887654443
No 123
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=1.9e-06 Score=87.11 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCCCcEEEEeeecc----hhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhh----hhcCCccEEEecc
Q 038611 703 LPEDVQCLEMFEVYD----IASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLL----PALKNLECLEVCG 774 (837)
Q Consensus 703 ~~~~L~~L~l~~~~~----~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~----~~L~~L~~L~l~~ 774 (837)
-+++|+.|++.++.- ...+-..+ ..|+ +|+.|.+.+| .+++-.....+ ...|+|+.|.+.+
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL---------~s~~-~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKAL---------SSWP-HLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHh---------cccc-hheeeccccc-ccccccHHHHHHHHhccCCCCceeccCc
Confidence 357888888876651 11121222 2455 7888888888 44443222111 2467888888888
Q ss_pred ccchhhhhccccchhhhhcccccccccccCCCcceEeccccc
Q 038611 775 CDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLP 816 (837)
Q Consensus 775 c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p 816 (837)
|.--.+-.. .........|.|++|.|.+|.
T Consensus 280 NeIt~da~~------------~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 280 NEITRDAAL------------ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred chhHHHHHH------------HHHHHHhcchhhHHhcCCccc
Confidence 732211100 000123347888888888764
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00036 Score=77.99 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=101.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC------------------CCCeEEEE
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 168 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 168 (837)
..++|. +..++.+..++..+.+ +++.++|+.|+||||+|+.++....-... .+.-+.++
T Consensus 16 ~diiGq--~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQ--EIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 378897 6678888888887665 56778999999999999999886521000 01112222
Q ss_pred EeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcE
Q 038611 169 TVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCK 242 (837)
Q Consensus 169 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ 242 (837)
..+..... +.+..+.... ..+++-++|+|+++... ..+.+...+........
T Consensus 94 daas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22111111 1111222111 13566799999997542 23333322222223344
Q ss_pred EEE-EeCChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 243 LVI-TTRSYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 243 iiv-TtR~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+|+ ||+...+... ..+..+.+.+++.++....+...+....... -.+.+..|+..++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 5444333321 1233489999999999888887654332222 34567788889999776554443
No 125
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.0013 Score=65.40 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=93.0
Q ss_pred cccccchhHHHHHHHHHh-----cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENL-----MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l-----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
+++|. ++.++.+.-++ .+...--+.++|++|.||||||.-+++.... . +-++.+....-..-
T Consensus 27 efiGQ--~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---n----~k~tsGp~leK~gD---- 93 (332)
T COG2255 27 EFIGQ--EKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---N----LKITSGPALEKPGD---- 93 (332)
T ss_pred HhcCh--HHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---C----eEecccccccChhh----
Confidence 89997 44444443333 2345678899999999999999999998721 1 12221111110011
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---------cccccccCC-CCCCCCc-----------E
Q 038611 184 ATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---------PLEKVGIPE-PNKENGC-----------K 242 (837)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~-~~~~~~s-----------~ 242 (837)
+..++..+ + ..=++.+|.++... ..+++...+ -+.++++ -
T Consensus 94 -----------------laaiLt~L-e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 94 -----------------LAAILTNL-E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -----------------HHHHHhcC-C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 11122222 1 22344556655321 011111100 0112222 2
Q ss_pred EEEEeCChhHhhhCC---cceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhc
Q 038611 243 LVITTRSYRVCRSMK---CKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASM 315 (837)
Q Consensus 243 iivTtR~~~v~~~~~---~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 315 (837)
|=-|||.-.+..-.. ....+++--+.+|-.+...+.+..-...- .++.+.+|+++..|-|--+.-+.+..
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 446888744322111 11268888899999999988775442233 45679999999999997665554443
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.88 E-value=7.5e-05 Score=77.17 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
..-+.++|++|+||||+|+.+++..... +.-....++.++.. ++... ..+ ........+.+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~----~l~~~---~~g-------~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA----DLVGE---YIG-------HTAQKTREVIKKA-- 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH----Hhhhh---hcc-------chHHHHHHHHHhc--
Confidence 4567899999999999999999876221 11111223333221 11111 010 1112222222222
Q ss_pred CCeEEEEEeCCCCCc----------cccccccCCCCCCCCcEEEEEeCChhH----------hhhCCcceEEeccCCHHh
Q 038611 211 KAKFVLILDDMWEAF----------PLEKVGIPEPNKENGCKLVITTRSYRV----------CRSMKCKQVEVELLSKEE 270 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~s~iivTtR~~~v----------~~~~~~~~~~l~~L~~~~ 270 (837)
..-+|++|+++.-. ..+.+............+|+++...+. ...+ ...+.+++++.++
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHH
Confidence 23588999997521 122222222222233355555544332 1222 1127899999999
Q ss_pred HHHHHHHHhCC
Q 038611 271 AFNLFIDRVGS 281 (837)
Q Consensus 271 ~~~Lf~~~~~~ 281 (837)
..+++.+.+..
T Consensus 183 l~~Il~~~~~~ 193 (261)
T TIGR02881 183 LMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHH
Confidence 99998877643
No 127
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00084 Score=71.19 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=114.6
Q ss_pred CCccccccchhHHHHHHHHHhcC----CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENLMG----DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
++..++|| +.+++.+.+++.. ....-+.|.|-+|.|||.+...++.+....... -.++++++..-....++..
T Consensus 148 ~p~~l~gR--e~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGR--ELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccch--HHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHH
Confidence 45588999 6677777777653 467899999999999999999999987332222 2457777766556677777
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCC-eEEEEEeCCCCC-----ccccccccCCCCCCCCcEEEEE---------
Q 038611 182 EIATALKESLPENEDKVSRAGRLLGMLKAKA-KFVLILDDMWEA-----FPLEKVGIPEPNKENGCKLVIT--------- 246 (837)
Q Consensus 182 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~s~iivT--------- 246 (837)
.|...+-..........+....+.+...+.+ .+++|+|.++.- ..+..+. .++ .-+++++|+.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lF-ewp-~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLF-EWP-KLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeeh-hcc-cCCcceeeeeeehhhhhHH
Confidence 7777763222222222444555555555555 789999998742 1121111 122 2345555432
Q ss_pred eCChhHhhh-CCcce--EEeccCCHHhHHHHHHHHhCCC-CCCCchhhHHHHHHHHHHhCCch
Q 038611 247 TRSYRVCRS-MKCKQ--VEVELLSKEEAFNLFIDRVGSS-ILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 247 tR~~~v~~~-~~~~~--~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
-|.-.-... .+..+ +...|-+.++..+.+....... .... ....+.-+++||.|.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~---~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIF---LNAAIELCARKVAAPS 362 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccccc---chHHHHHHHHHhccCc
Confidence 221111111 23333 7789999999999999887554 2222 2234444455554443
No 128
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=7.9e-06 Score=94.59 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=89.5
Q ss_pred cccEEEccccC--CCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 467 NLERVSLMMND--IDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 467 ~~~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
+++++++.+.. ....|.....-+|+|++|.+.+-.....--..++.++++|+.||+|+++++.+ ..+++|+||+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 45666665532 12233333456899999999875321111223457899999999999999988 6899999999999
Q ss_pred ccCccccCCCc---cccccCCCCEEeccCCcCcccccc-------ccCCCCCCEEeccCCCCC
Q 038611 545 LQRCRRLKRVP---SVAKLLALQHLDLRGTSIEEVPEG-------MQMLENLSHLYLYSPPLK 597 (837)
Q Consensus 545 L~~~~~l~~lp---~~~~l~~L~~L~l~~~~i~~lp~~-------~~~l~~L~~L~l~~~~l~ 597 (837)
+++-. +..-+ .+.+|++|++||++......-+.- -..||+||.||.+++.+.
T Consensus 202 mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 98733 32222 588999999999998743333311 134899999999987653
No 129
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.00031 Score=78.77 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=104.2
Q ss_pred ccccchhHHHHHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 110 LVGEKTKKVVEIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
++|............+.... ...-+.|+|..|+|||+||+++++.... ...-..+++++.. ++..++...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~ 197 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNAL 197 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHH
Confidence 44653333445454544432 2466899999999999999999998732 2223346666543 3344444444
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc---c-cccccCCCC-CCCCcEEEEEeCChh---------Hh
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP---L-EKVGIPEPN-KENGCKLVITTRSYR---------VC 253 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~~s~iivTtR~~~---------v~ 253 (837)
... . ...+.+.+ . +.-+|||||++.... + +.+...+.. ...|..||+||.... +.
T Consensus 198 ~~~-----~----~~~~~~~~-~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 198 RNN-----T----MEEFKEKY-R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HcC-----c----HHHHHHHH-h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 321 1 12233333 2 345899999974311 1 122211110 123445788776532 23
Q ss_pred hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 254 RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 254 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
....... +++++.+.++-..++++.+......- -.++...|++.+.|..-.+.
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL---PDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHcCcCCCHHHHH
Confidence 3344433 89999999999999998875432222 45678899999988776443
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00013 Score=84.14 Aligned_cols=193 Identities=12% Similarity=0.154 Sum_probs=106.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++...-.. ... ....++.-...+.|...
T Consensus 16 ~eiiGq--~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQ--EHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT-NDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCCccCHHHHHHhcC
Confidence 488998 6677888888877665 5678999999999999999998762100 000 00111111222333222
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCC-hhHhhh
Q 038611 187 LKESL---PE-NEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRS-YRVCRS 255 (837)
Q Consensus 187 l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~ 255 (837)
...+. .. .....+.+..+.+.+. .+++-++|+|+++.. ...+.+...+......+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 11110 00 0011122222222221 245678999999754 2333343323222334555555543 333221
Q ss_pred --CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 256 --MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 256 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
..+..+.+.+++.++....+.+.+......- -.+.+..|++.++|.+..+....
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1233388999999998888887765432222 35678899999999886655443
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00053 Score=77.99 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=104.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.+..++..+.. +.+.++|+.|+||||+|+.+++..--. .... ...+....+. ++|...
T Consensus 16 ~diiGq--e~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~---~~pC~~C~~C----~~i~~~ 85 (563)
T PRK06647 16 NSLEGQ--DFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPT---PMPCGECSSC----KSIDND 85 (563)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCC---CCCCccchHH----HHHHcC
Confidence 378998 6678888888877665 578899999999999999999876211 0000 0001111111 111110
Q ss_pred hcCC---CC-CCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEe-CChhHhhh
Q 038611 187 LKES---LP-ENEDKVSRAGRLLGML----KAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITT-RSYRVCRS 255 (837)
Q Consensus 187 l~~~---~~-~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTt-R~~~v~~~ 255 (837)
-..+ .. ......+.+..+.+.+ ..+++-++|+|+++... .++.+...+......+.+|++| ....+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 00 0001111222222111 13556688999997543 3444443333223345555544 43344221
Q ss_pred --CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 256 --MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 256 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
..+..++..+++.++....+.+.+......- -.+.+..|++.++|.+-.+...
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2233489999999999888887663332222 3567788999999988655444
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.5e-05 Score=56.45 Aligned_cols=40 Identities=30% Similarity=0.543 Sum_probs=30.8
Q ss_pred CCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCC
Q 038611 561 LALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELP 600 (837)
Q Consensus 561 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p 600 (837)
++|++|++++|.|+.+|..+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4678888888888888877888888888888888877664
No 133
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=7.3e-05 Score=79.71 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=41.5
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCC-CCcccChh
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFT-AIEVLPNS 533 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~i~~lp~~ 533 (837)
..+++|++.++.+..+|. + -++|++|.+++|..+..+|..+ ...|++|++++| .+..+|.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred cCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc
Confidence 356778888777777762 1 1358888888776676666543 246788888887 57677754
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.80 E-value=0.00028 Score=84.49 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEE-EEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIW-VTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~w-v~vs~~~~~~~~~~~i~ 184 (837)
.++|| +.++.++++.|......-+.++|.+|+||||+|+.+++...... ...+..+| +..+.
T Consensus 188 ~~iGr--~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------------ 253 (852)
T TIGR03345 188 PVLGR--DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------------ 253 (852)
T ss_pred cccCC--HHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------------
Confidence 78999 67899999998887777778999999999999999998862211 01222333 22221
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHh-cCCeEEEEEeCCCCCc-------ccc--ccccCCCCCCCC-cEEEEEeCChhH-
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLK-AKAKFVLILDDMWEAF-------PLE--KVGIPEPNKENG-CKLVITTRSYRV- 252 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-------~~~--~l~~~~~~~~~~-s~iivTtR~~~v- 252 (837)
+........+...++..++.... .+++.+|++|+++.-. ..+ .+..|.. ..| -++|-||...+.
T Consensus 254 --l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 254 --LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--ARGELRTIAATTWAEYK 329 (852)
T ss_pred --hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--hCCCeEEEEecCHHHHh
Confidence 00000111222344444554443 3468999999987531 111 1222222 233 355555554322
Q ss_pred -------hhhCCcceEEeccCCHHhHHHHHHHHhCCCCC-CCchhhHHHHHHHHHHhCCc
Q 038611 253 -------CRSMKCKQVEVELLSKEEAFNLFIDRVGSSIL-QVPTLNREIINSIVEECGCL 304 (837)
Q Consensus 253 -------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~Gl 304 (837)
|-......+.+++++.++...++......-.. ..-....+....+++.+++.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11112334999999999999997544321100 00011345556666666543
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.78 E-value=0.00015 Score=86.06 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=89.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.++|| +++++.+++.|......-+.++|++|+|||++|+.+++......-. .+..+|.- +...+. .
T Consensus 183 ~~igr--~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~----a 251 (731)
T TIGR02639 183 PLIGR--EDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL----A 251 (731)
T ss_pred cccCc--HHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----h
Confidence 78999 7788899998887766677899999999999999999986321111 13334421 111111 0
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc----------cccccccCCCCCCCC-cEEEEEeCChhH--
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF----------PLEKVGIPEPNKENG-CKLVITTRSYRV-- 252 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~-s~iivTtR~~~v-- 252 (837)
. .....+....+..+.+.+...++.+|++|+++.-. +...+..+.. ..| -++|-+|...+.
T Consensus 252 ~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 G----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred h----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHHHH
Confidence 0 00112334455556665544568999999997321 1112222211 223 244444443221
Q ss_pred ------hhhCCcceEEeccCCHHhHHHHHHHHh
Q 038611 253 ------CRSMKCKQVEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 253 ------~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 279 (837)
+-......+.+++++.++...+++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111122348999999999999998654
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00069 Score=77.98 Aligned_cols=195 Identities=14% Similarity=0.179 Sum_probs=106.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|. +..++.|..++..+.. +.+.++|+.|+||||+|+.+++..-- ...+.. ....++.-...+.+...
T Consensus 16 ~~liGq--~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c--~~~~~~----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQ--EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC--LNSDKP----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC--CCcCCC----CCCCCcccHHHHHHhcC
Confidence 378897 6677888888887654 78899999999999999999987621 111000 00111111222222221
Q ss_pred hcCCC----CCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE-EeCChhHhhh
Q 038611 187 LKESL----PENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI-TTRSYRVCRS 255 (837)
Q Consensus 187 l~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv-TtR~~~v~~~ 255 (837)
...+. .......+.+..+..... .+++-++|+|+++.. ...+.+...+..-...+.+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 001111223333332221 245568899999854 234444333322223344444 4443333222
Q ss_pred --CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 256 --MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 256 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
..+..+++.+++.++....+...+......- -.+.+..|++.++|.+..+.....
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2244488889999988887777654432122 245688999999998865554433
No 137
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=3.9e-05 Score=75.91 Aligned_cols=86 Identities=21% Similarity=0.235 Sum_probs=54.9
Q ss_pred hcCCCCcEEEecCCCCccc---ChhhhcccccceecccCccccCCCccc-cccCCCCEEeccCCcCc--cccccccCCCC
Q 038611 512 AHMHGLKILNLSFTAIEVL---PNSVSDLMNLISLLLQRCRRLKRVPSV-AKLLALQHLDLRGTSIE--EVPEGMQMLEN 585 (837)
Q Consensus 512 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~l~~L~~L~l~~~~i~--~lp~~~~~l~~ 585 (837)
..+++++.|||.+|.|+.- ..-+.+|++|++|+|+.|..-..+.++ .-+.+|++|-|.|+.+. ..-..+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4567888888888887643 333457788888888875433333222 34567888888877543 33344566777
Q ss_pred CCEEeccCCCCC
Q 038611 586 LSHLYLYSPPLK 597 (837)
Q Consensus 586 L~~L~l~~~~l~ 597 (837)
++.|+++.|++.
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 777777766543
No 138
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.75 E-value=1.7e-06 Score=89.38 Aligned_cols=239 Identities=20% Similarity=0.094 Sum_probs=129.8
Q ss_pred CCCcEEEecCCC---CcccChhhhcccccceecccCccccCCCc--c-ccccCCCCEEeccCC-cCcccc--ccccCCCC
Q 038611 515 HGLKILNLSFTA---IEVLPNSVSDLMNLISLLLQRCRRLKRVP--S-VAKLLALQHLDLRGT-SIEEVP--EGMQMLEN 585 (837)
Q Consensus 515 ~~L~~L~L~~~~---i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~-~~~l~~L~~L~l~~~-~i~~lp--~~~~~l~~ 585 (837)
..|+.|.+.++. .+.+-....+++++..|.+.+|..+++.. + -..+++|++|++..| .++..- .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 346777777775 22333445677788888888887766544 3 245677778877776 454321 12245677
Q ss_pred CCEEeccCCC-CCC--CCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccc
Q 038611 586 LSHLYLYSPP-LKE--LPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESE 662 (837)
Q Consensus 586 L~~L~l~~~~-l~~--~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 662 (837)
|++|+++.|. ++. +- ....+.+.|+.+.+.+|.......+..+..-...+..++
T Consensus 218 L~~lNlSwc~qi~~~gv~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln---------------------- 274 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQ-ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN---------------------- 274 (483)
T ss_pred HHHhhhccCchhhcCcch-HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc----------------------
Confidence 7777777664 222 10 012333344444332221111111111111000011111
Q ss_pred eEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhccccccccccccccccccc
Q 038611 663 KYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLK 742 (837)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~ 742 (837)
+..|..+.... ....-.....|+.|..++|..+.+.+-|. | ...-+ +|+
T Consensus 275 ----------------------l~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~a--L-----g~~~~-~L~ 323 (483)
T KOG4341|consen 275 ----------------------LQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWA--L-----GQHCH-NLQ 323 (483)
T ss_pred ----------------------hhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHH--H-----hcCCC-ceE
Confidence 11111100000 00001125778889888888655433111 0 12334 999
Q ss_pred EEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccccccccc
Q 038611 743 VLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTF 821 (837)
Q Consensus 743 ~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i 821 (837)
.|.++.|.++++...-..-.+.+.|+.+++..|..+..--. ......+|.|++|.|+.|.....-
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL--------------~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL--------------ASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH--------------hhhccCCchhccCChhhhhhhhhh
Confidence 99999999988764433446888999999999976654311 013457899999999998776655
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.74 E-value=0.00047 Score=73.76 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=79.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +...+.+..++..+.. .++.++|++|+||||+|+.+++.. .. .+..++.+. ..... .+..+..
T Consensus 21 ~~~~~~--~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~~~~-i~~~l~~ 90 (316)
T PHA02544 21 DECILP--AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CRIDF-VRNRLTR 90 (316)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Cc---cceEeccCc-ccHHH-HHHHHHH
Confidence 378898 6677888888877654 677779999999999999998865 11 134444444 22211 1111111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccc-cccccCCCCCCCCcEEEEEeCChhHh-hh--CCcce
Q 038611 187 LKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPL-EKVGIPEPNKENGCKLVITTRSYRVC-RS--MKCKQ 260 (837)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~-~~l~~~~~~~~~~s~iivTtR~~~v~-~~--~~~~~ 260 (837)
.... ..+ .+.+-++|+||++.. ... ..+...+.....++.+|+||...... .. ..+..
T Consensus 91 ~~~~---------------~~~-~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FAST---------------VSL-TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHh---------------hcc-cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1000 001 134567899999754 111 12221122224567888888654311 10 11223
Q ss_pred EEeccCCHHhHHHHHH
Q 038611 261 VEVELLSKEEAFNLFI 276 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~ 276 (837)
+.+...+.++...++.
T Consensus 155 i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 155 IDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 6676777777666554
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00029 Score=70.61 Aligned_cols=182 Identities=15% Similarity=0.204 Sum_probs=108.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEE-EEeCCCcCHHHHHHHH--HH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW-VTVSQPLDLIKLQTEI--AT 185 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w-v~vs~~~~~~~~~~~i--~~ 185 (837)
+++|. +..+..+.+.+.....+....+|++|.|||+-|..++... --.+.|.+++- .++|....+.-+-.++ ..
T Consensus 37 e~~gQ--e~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Kik~fa 113 (346)
T KOG0989|consen 37 ELAGQ--EHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKIKNFA 113 (346)
T ss_pred hhcch--HHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhhcCHH
Confidence 67887 6677888888888778999999999999999999999876 22345555433 3444433222000000 00
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCe-EEEEEeCCCCC--ccccccccCCCCCCCCcE-EEEEeCChhHhhh--CCcc
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAK-FVLILDDMWEA--FPLEKVGIPEPNKENGCK-LVITTRSYRVCRS--MKCK 259 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~-iivTtR~~~v~~~--~~~~ 259 (837)
++......... ....+ -+||||+++.. +.|..+..........++ |+||+.-..+..- ..+.
T Consensus 114 kl~~~~~~~~~------------~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 114 KLTVLLKRSDG------------YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred HHhhccccccC------------CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 11000000000 01233 46899999864 557666544433344444 4455443332211 1233
Q ss_pred eEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 260 QVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 260 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
.++.++|..++...-++..+..+..+- ..+..+.|++.++|.---+
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~A 227 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRA 227 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHH
Confidence 489999999998888888776554433 5667899999999954333
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0025 Score=71.90 Aligned_cols=156 Identities=12% Similarity=0.169 Sum_probs=93.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAK 211 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 211 (837)
..+.|+|..|+|||.|++++++.... ......++|++. .++..++...+... ....+.+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y-~- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRY-R- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHh-h-
Confidence 45899999999999999999998632 222234667653 34444454443221 011222333 2
Q ss_pred CeEEEEEeCCCCCc---cccc-cccCCCC-CCCCcEEEEEeCCh---------hHhhhCCcce-EEeccCCHHhHHHHHH
Q 038611 212 AKFVLILDDMWEAF---PLEK-VGIPEPN-KENGCKLVITTRSY---------RVCRSMKCKQ-VEVELLSKEEAFNLFI 276 (837)
Q Consensus 212 k~~LlVlDdv~~~~---~~~~-l~~~~~~-~~~~s~iivTtR~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~ 276 (837)
+.=+|||||+.... .|+. +...+.. ...+..|||||... .+...+.... +.+.+.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24578999997532 2221 2211111 13355688888763 1233444444 8999999999999999
Q ss_pred HHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 277 DRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
+++......- -.+++..|++++.+..-.+
T Consensus 457 kka~~r~l~l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLNA---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCCC---CHHHHHHHHHhccCCHHHH
Confidence 8876553332 3567888888877664443
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00034 Score=80.31 Aligned_cols=191 Identities=13% Similarity=0.183 Sum_probs=101.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.+++|. +..++.|..++..+++ +.+.++|+.|+||||+|+.+++..--... .+ ...++.-....+|...
T Consensus 16 ~~iiGq--~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 16 SDLTGQ--EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG-LT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CC-------CCCCCccHHHHHHhcC
Confidence 488998 6677888888887765 56789999999999999999887521100 00 0000000111111100
Q ss_pred hcCCC---C-CCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEE-EEeCChhHhhh
Q 038611 187 LKESL---P-ENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLV-ITTRSYRVCRS 255 (837)
Q Consensus 187 l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~~ 255 (837)
-..+. . ......+.+..+...+. .+++-++|+|+++... ..+.+...+..-...+.+| +||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 00000 0 00001112222222221 2445578899997542 2333332222212344444 55555544322
Q ss_pred C--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHHHH
Q 038611 256 M--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIVTV 311 (837)
Q Consensus 256 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 311 (837)
. .+..+++.+++.++....+...+......- -.+....|++.++|..- |+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 233488999999998888877654332222 35567888999998664 44443
No 143
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=3.4e-06 Score=93.69 Aligned_cols=128 Identities=27% Similarity=0.344 Sum_probs=85.1
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceeccc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQ 546 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 546 (837)
.+..+++..|.+.... .....+++|..|++.+| .+..+... +..+++|++|++++|.|..+. .+..+..|+.|++.
T Consensus 73 ~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhhhh-cccccccceeeeecccc-chhhcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 3444445555555421 11356677777777777 56655543 367778888888888877775 46677778888888
Q ss_pred CccccCCCccccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCC
Q 038611 547 RCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKEL 599 (837)
Q Consensus 547 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~ 599 (837)
+ +.+..++.+..+.+|+.+++++|.+..++.. +..+.+|+.+++.+|.+..+
T Consensus 149 ~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 149 G-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred c-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 7 4566666666677888888888877766553 46677777777777766554
No 144
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.70 E-value=0.00023 Score=76.90 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=68.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
.+++. +...+.+...+.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||.+++..+..++...+.-. +
T Consensus 176 d~~i~--e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~ 249 (459)
T PRK11331 176 DLFIP--ETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-G 249 (459)
T ss_pred cccCC--HHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-C
Confidence 45555 5677788777764 3678889999999999999999887 334568889999999988877665422110 0
Q ss_pred CCCCCCccHHHHHHHHHHHH-hcCCeEEEEEeCCCCC
Q 038611 189 ESLPENEDKVSRAGRLLGML-KAKAKFVLILDDMWEA 224 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~ 224 (837)
............. +.+.. ..++++++|+|++...
T Consensus 250 vgy~~~~G~f~~~--~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 250 VGFRRKDGIFYNF--CQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCeEecCchHHHH--HHHHHhcccCCcEEEEehhhcc
Confidence 0000001111111 11111 1246899999999754
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0012 Score=75.49 Aligned_cols=190 Identities=13% Similarity=0.149 Sum_probs=102.5
Q ss_pred ccccccchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|. +..++.+..++..+. .+.+.++|+.|+||||+|+.+++...-.... ...+++.-...+.|...
T Consensus 16 ~~viGq--~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~--------~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQ--EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP--------DGEPCNECEICKAITNG 85 (559)
T ss_pred HhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC--------CCCCCCccHHHHHHhcC
Confidence 488998 667788888887765 4667889999999999999998765211000 00111111111222111
Q ss_pred hcCCC----CCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEE-EEeCChhHhhh
Q 038611 187 LKESL----PENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLV-ITTRSYRVCRS 255 (837)
Q Consensus 187 l~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~~ 255 (837)
...+. .........+..+..... .+++-++|+|+++.. ..+..+...+........+| .||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 00000 000011222222322221 356678899999754 23433333222212233444 45544444322
Q ss_pred C--CcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 256 M--KCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 256 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
. .+..++..+++.++....+...+......- -.+.+..|++.++|.+..+..
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 1 233488999999999888887664332222 345677888899987765443
No 146
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00029 Score=82.61 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=89.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.++|| +.++.++++.|......-+.++|++|+|||++|+.+++........ .++.+|.. +...+ +.
T Consensus 187 ~liGR--~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 187 PLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred cCcCC--CHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 68999 7788999998887655666789999999999999999875322111 23444421 11111 10
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--------c--cccccccCCCCCCCCcEEEEEeCChhHhh-
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--------F--PLEKVGIPEPNKENGCKLVITTRSYRVCR- 254 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------~--~~~~l~~~~~~~~~~s~iivTtR~~~v~~- 254 (837)
+. ....+....+..+...+....+.+|+||+++.- . +...+..++.. ...-+||-+|...+...
T Consensus 256 --G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 --GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred --cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHH
Confidence 11 111233444555555554556789999999742 1 11112222222 22234554444433211
Q ss_pred -------hCCcceEEeccCCHHhHHHHHHHHh
Q 038611 255 -------SMKCKQVEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 255 -------~~~~~~~~l~~L~~~~~~~Lf~~~~ 279 (837)
......+.+++.+.++...++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122348999999999999988653
No 147
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.0001 Score=78.64 Aligned_cols=82 Identities=21% Similarity=0.473 Sum_probs=59.1
Q ss_pred CCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCC-CcccChhhhcccccceecccCccccCCCccccccCCCCEE
Q 038611 488 HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA-IEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHL 566 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 566 (837)
.|++++.|++++| .+..+|. -..+|+.|.+++|. +..+|..+. .+|++|++++|..+..+|. +|++|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----ccceE
Confidence 4578899999988 7888872 23469999998865 677786553 5899999999987877772 35666
Q ss_pred eccCC---cCcccccccc
Q 038611 567 DLRGT---SIEEVPEGMQ 581 (837)
Q Consensus 567 ~l~~~---~i~~lp~~~~ 581 (837)
++.++ .+..+|.++.
T Consensus 118 ~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLT 135 (426)
T ss_pred EeCCCCCcccccCcchHh
Confidence 66654 3556776543
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.0012 Score=73.13 Aligned_cols=152 Identities=14% Similarity=0.195 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
..-+.|+|+.|+|||+||+++++.... ....+++++. ..+...+...+... . .......+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~------~~f~~~~~~~l~~~------~---~~~f~~~~-- 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS------ELFTEHLVSAIRSG------E---MQRFRQFY-- 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH------HHHHHHHHHHHhcc------h---HHHHHHHc--
Confidence 356889999999999999999998732 1234566642 33444555554321 1 11222222
Q ss_pred CCeEEEEEeCCCCCcc---c-cccccCCCC-CCCCcEEEEEeCCh-h--------HhhhCCcce-EEeccCCHHhHHHHH
Q 038611 211 KAKFVLILDDMWEAFP---L-EKVGIPEPN-KENGCKLVITTRSY-R--------VCRSMKCKQ-VEVELLSKEEAFNLF 275 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~~s~iivTtR~~-~--------v~~~~~~~~-~~l~~L~~~~~~~Lf 275 (837)
...-++++||+..... + +++...+.. ...|..||+||... . +..++.... +.+.+++.++-..++
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 2345888999975321 1 122222110 02345788888542 1 233333334 899999999999999
Q ss_pred HHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 276 IDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
.+.+......- -.++...|+..+.|.-
T Consensus 281 ~~k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 88775442222 3456666777776543
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00084 Score=69.97 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=70.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCC
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKA 212 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 212 (837)
-+.++|++|.||||+|+.+++.... .+.....-|+.++. .+ +...+... . ......+.+.. .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~----l~~~~~g~----~--~~~~~~~~~~a---~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DD----LVGQYIGH----T--APKTKEILKRA---M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HH----HhHhhccc----c--hHHHHHHHHHc---c
Confidence 5889999999999999998887632 22221123444442 11 22222111 0 11122233322 3
Q ss_pred eEEEEEeCCCCC------ccc-----cccccCCCCCCCCcEEEEEeCChhHhhhC--C-------cceEEeccCCHHhHH
Q 038611 213 KFVLILDDMWEA------FPL-----EKVGIPEPNKENGCKLVITTRSYRVCRSM--K-------CKQVEVELLSKEEAF 272 (837)
Q Consensus 213 ~~LlVlDdv~~~------~~~-----~~l~~~~~~~~~~s~iivTtR~~~v~~~~--~-------~~~~~l~~L~~~~~~ 272 (837)
.-+|+||++..- ..+ ..+...+.....+.+||+++......... . ...+.+++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468899999632 111 22222222333455677776543322111 1 223899999999999
Q ss_pred HHHHHHhCC
Q 038611 273 NLFIDRVGS 281 (837)
Q Consensus 273 ~Lf~~~~~~ 281 (837)
.++...+..
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998876543
No 150
>CHL00181 cbbX CbbX; Provisional
Probab=97.63 E-value=0.0016 Score=67.88 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=70.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAK 211 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 211 (837)
..+.++|++|+||||+|+.+++.... .+.-...-|+.++. .. +....-.. . ......+.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~----~~----l~~~~~g~----~--~~~~~~~l~~a--- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR----DD----LVGQYIGH----T--APKTKEVLKKA--- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH----HH----HHHHHhcc----c--hHHHHHHHHHc---
Confidence 35889999999999999999887522 11111122444442 12 22222111 0 11122222222
Q ss_pred CeEEEEEeCCCCC-----------ccccccccCCCCCCCCcEEEEEeCChhHh----------hhCCcceEEeccCCHHh
Q 038611 212 AKFVLILDDMWEA-----------FPLEKVGIPEPNKENGCKLVITTRSYRVC----------RSMKCKQVEVELLSKEE 270 (837)
Q Consensus 212 k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~s~iivTtR~~~v~----------~~~~~~~~~l~~L~~~~ 270 (837)
..-+|+||++... +....+...+.......+||+++....+. ..+ ...+.+++++.++
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~-~~~i~F~~~t~~e 200 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRI-ANHVDFPDYTPEE 200 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhC-CceEEcCCcCHHH
Confidence 2358999999642 11112222222333456777777654432 111 1228899999999
Q ss_pred HHHHHHHHhCC
Q 038611 271 AFNLFIDRVGS 281 (837)
Q Consensus 271 ~~~Lf~~~~~~ 281 (837)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99988877643
No 151
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.63 E-value=0.00045 Score=75.57 Aligned_cols=169 Identities=14% Similarity=0.208 Sum_probs=91.8
Q ss_pred cccccchhHHHHHHHHHhc----C---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 109 TLVGEKTKKVVEIIWENLM----G---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
.+.|+ +..++++.+.+. . ..++-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 132 di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~--- 198 (389)
T PRK03992 132 DIGGL--EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG--- 198 (389)
T ss_pred HhCCc--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh---
Confidence 67788 555566655442 1 235779999999999999999999875 112 222221
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc------------c----ccccccCCC--CC
Q 038611 176 LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF------------P----LEKVGIPEP--NK 237 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~ 237 (837)
..+ ..... ......+..+.+......+.+|+|||++... . +..+...+. ..
T Consensus 199 -~~l----~~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SEL----VQKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHH----hHhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 11110 0111223333333334567899999997421 0 111111111 11
Q ss_pred CCCcEEEEEeCChhHhhh--C---Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 238 ENGCKLVITTRSYRVCRS--M---KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 238 ~~~s~iivTtR~~~v~~~--~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
..+..||.||...+.... . .... +.+++.+.++-.++|+..+......... ....+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCCC
Confidence 235567777766443211 1 1233 8999999999999998876543211111 1355667777654
No 152
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=5.5e-05 Score=53.53 Aligned_cols=33 Identities=39% Similarity=0.430 Sum_probs=17.9
Q ss_pred CCcEEEecCCCCcccChhhhcccccceecccCc
Q 038611 516 GLKILNLSFTAIEVLPNSVSDLMNLISLLLQRC 548 (837)
Q Consensus 516 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 548 (837)
+|++|++++|.|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455666666666665555555555555555553
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0034 Score=66.26 Aligned_cols=196 Identities=12% Similarity=0.138 Sum_probs=105.2
Q ss_pred cccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhc------------CCCCeEEEEEeCCCcC
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKET------------NKFNVVIWVTVSQPLD 175 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~------------~~f~~~~wv~vs~~~~ 175 (837)
.++|. +..++.+...+.++.+ +.+.++|+.|+||+++|..+++..--.. ....-..|+.-....+
T Consensus 5 ~iiGq--~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 5 NLIGQ--PLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HhCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 57887 6678888888888774 8999999999999999999987752111 0111123442110000
Q ss_pred HHHHHHHHHHHhcCCC-CCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeC
Q 038611 176 LIKLQTEIATALKESL-PENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTR 248 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR 248 (837)
-..+-..-+...+... ....-..+.+..+.+.+. .+.+-++|+|+++... ..+.+...+-.-....-|++|+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 0000001111111000 000111223334433332 3566788999987543 23333222211122333444444
Q ss_pred ChhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 249 SYRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 249 ~~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
...+... ..+..+++.+++.++..+.+.+...... .......++..++|.|..+....
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHHH
Confidence 4444322 2344499999999999999987643221 11124688899999997765543
No 154
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.59 E-value=0.00051 Score=70.90 Aligned_cols=162 Identities=13% Similarity=0.161 Sum_probs=99.1
Q ss_pred ccccccchhHHHHHHHHHhcCCC---CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDK---APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
+.+.+| +..+..+...+.+.. +..|.|+|-+|.|||.+.+++.+.. . -..+|+++-+.++.+.++..|+
T Consensus 6 ~~v~~R--e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCR--ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred cCccch--HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHH
Confidence 456788 667888877776543 4566899999999999999999876 1 1259999999999999999999
Q ss_pred HHhc-CCCCCCccHH--HHHHHHHHHHh-------cCCeEEEEEeCCCCCccccccccC----CC--CCCCCcEEEEEeC
Q 038611 185 TALK-ESLPENEDKV--SRAGRLLGMLK-------AKAKFVLILDDMWEAFPLEKVGIP----EP--NKENGCKLVITTR 248 (837)
Q Consensus 185 ~~l~-~~~~~~~~~~--~~~~~l~~~l~-------~~k~~LlVlDdv~~~~~~~~l~~~----~~--~~~~~s~iivTtR 248 (837)
.+.+ .+.+...... +........+. .++.++||||+++.-.+.+....+ +. -..+.. +|+++-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~ 156 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSA 156 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEec
Confidence 9986 2221111111 12222221111 246899999999865544332111 00 012223 333332
Q ss_pred C--hhH-hhhCCcce---EEeccCCHHhHHHHHHHH
Q 038611 249 S--YRV-CRSMKCKQ---VEVELLSKEEAFNLFIDR 278 (837)
Q Consensus 249 ~--~~v-~~~~~~~~---~~l~~L~~~~~~~Lf~~~ 278 (837)
. +.. -..+++.. +....-+.++...++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 222 22233332 566778888888887654
No 155
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4e-06 Score=82.77 Aligned_cols=175 Identities=23% Similarity=0.160 Sum_probs=70.2
Q ss_pred ccEEEccccCCCCC-CCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCC-Cccc--Chhhhccccccee
Q 038611 468 LERVSLMMNDIDEI-PSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA-IEVL--PNSVSDLMNLISL 543 (837)
Q Consensus 468 ~~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l--p~~i~~l~~L~~L 543 (837)
++++++++..++.- .....+.|.+|+-|.+.++..-..+...+ .+-..|+.|+|+.|. +++. ---+.+++.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 45555554443321 01123345555555555442222222222 344455555555543 2221 1123344555555
Q ss_pred cccCccccCCCc--cccc-cCCCCEEeccCC--cC--ccccccccCCCCCCEEeccCCC-CCCCCCCcccCCccCcEEEc
Q 038611 544 LLQRCRRLKRVP--SVAK-LLALQHLDLRGT--SI--EEVPEGMQMLENLSHLYLYSPP-LKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 544 ~L~~~~~l~~lp--~~~~-l~~L~~L~l~~~--~i--~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l 615 (837)
+|++|......- .+.. -.+|..|+++|| ++ ..+..-...+++|.+||++.|. ++.--...|-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 555544332211 0111 124444555554 11 1121122445555555555442 22210111344555555555
Q ss_pred cccchhhhhhHHHHhhhhhccCeeEEeec
Q 038611 616 YFGWEALEETVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 616 ~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 644 (837)
+.|.......+-++... ..|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~-psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSK-PSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccC-cceEEEEeccc
Confidence 44444444444444444 55555555443
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.57 E-value=0.00039 Score=83.72 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=91.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.++|| +++++.+++.|......-+.++|++|+|||++|+.++.......-. -+..+|. + +...++ .
T Consensus 180 ~~igr--~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 180 PVIGR--EKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCc--HHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 68999 7899999999987766667899999999999999999886321111 1234443 1 111111 0
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---------cccccccCCCCCCCCcEEEEEeCChhHhh--
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---------PLEKVGIPEPNKENGCKLVITTRSYRVCR-- 254 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~s~iivTtR~~~v~~-- 254 (837)
+. ....+...++..+++.+...++.+|++|+++.-. +...+..+... ...-++|-+|...+...
T Consensus 249 --g~--~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 --GT--KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHI 323 (821)
T ss_pred --cC--CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHH
Confidence 11 1123344566666666655678999999996321 11122222211 12235555555544311
Q ss_pred ------hCCcceEEeccCCHHhHHHHHHHH
Q 038611 255 ------SMKCKQVEVELLSKEEAFNLFIDR 278 (837)
Q Consensus 255 ------~~~~~~~~l~~L~~~~~~~Lf~~~ 278 (837)
......+.+...+.++...++...
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112223788888999988887653
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=1.3e-05 Score=89.06 Aligned_cols=125 Identities=26% Similarity=0.341 Sum_probs=97.8
Q ss_pred CCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCccccccCCCCEEe
Q 038611 488 HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLD 567 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 567 (837)
.+..+..+.+..| .+..+-.. +..++.|.+|++.+|.|..+...+..+.+|++|++++ +.++.+..+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhhe
Confidence 4456666666666 45443322 3788999999999999998886588999999999999 5788888888888899999
Q ss_pred ccCCcCccccccccCCCCCCEEeccCCCCCCCCC-CcccCCccCcEEEccc
Q 038611 568 LRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPA-GLLPRLRKLCRLSLYF 617 (837)
Q Consensus 568 l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~ 617 (837)
+.+|.|..++ ++..+++|+.+++++|.+..+.. . +..+.+|+.+.+..
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence 9999888764 56668999999999999888765 2 36778888888833
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0022 Score=68.08 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcC-------CCCCCccHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKE-------SLPENEDKVSRAGR 203 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~~ 203 (837)
.+.+.++|+.|+||||+|+.++...--.. ... ....+.-.-.+.+...-.. ......-..+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEA-PQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 57889999999999999999998762110 000 0000000001111000000 00000111223333
Q ss_pred HHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCChh-Hhh--hCCcceEEeccCCHHhHHHH
Q 038611 204 LLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRSYR-VCR--SMKCKQVEVELLSKEEAFNL 274 (837)
Q Consensus 204 l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~--~~~~~~~~l~~L~~~~~~~L 274 (837)
+.+.+. .+++-++|+|+++.. ...+.+...+..-..++.+|+||.+.+ +.. ...+..+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 333321 234445577999864 233333333322234566666666653 322 22344599999999999988
Q ss_pred HHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 275 FIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 275 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
+.+..+.. ..+.+..++..++|.|..+..+
T Consensus 174 L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 87654221 2334567789999999866554
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.52 E-value=0.00084 Score=80.74 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=87.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc--C-CCC-eEEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKET--N-KFN-VVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~-~f~-~~~wv~vs~~~~~~~~~~~i~ 184 (837)
.++|| +.++..+++.|....-.-+.++|.+|+|||++|+.++....... . ... .++++..+.- .
T Consensus 179 ~vigr--~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~---- 246 (857)
T PRK10865 179 PVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V---- 246 (857)
T ss_pred cCCCC--HHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h----
Confidence 68999 67899999999887777778999999999999999998762110 0 012 2233322221 0
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHh-cCCeEEEEEeCCCCCc---------cccccccCCCCCCCCcEEEEEeCChhH--
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLK-AKAKFVLILDDMWEAF---------PLEKVGIPEPNKENGCKLVITTRSYRV-- 252 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~s~iivTtR~~~v-- 252 (837)
. + .....+...++..++..+. .+++.+|++|+++.-. +...+..|... ...-++|-+|...+.
T Consensus 247 a--g--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 247 A--G--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 321 (857)
T ss_pred h--c--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHHH
Confidence 0 0 0111223334444544432 3568999999997432 11222223222 123355555444332
Q ss_pred ------hhhCCcceEEeccCCHHhHHHHHHHHh
Q 038611 253 ------CRSMKCKQVEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 253 ------~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 279 (837)
+-.-....+.+..-+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111122236676668888888886554
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00036 Score=64.52 Aligned_cols=91 Identities=21% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
...+.|+|++|+||||+|+.+++.... ....++++..+........... ...... ....................
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLL-LIIVGG-KKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHH-hhhhhc-cCCCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999987621 1123566654443222111111 111111 11122223333344444433
Q ss_pred CCeEEEEEeCCCCCcc
Q 038611 211 KAKFVLILDDMWEAFP 226 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~ 226 (837)
.+..+|++|+++....
T Consensus 77 ~~~~viiiDei~~~~~ 92 (148)
T smart00382 77 LKPDVLILDEITSLLD 92 (148)
T ss_pred cCCCEEEEECCcccCC
Confidence 3459999999987644
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.00067 Score=77.54 Aligned_cols=200 Identities=13% Similarity=0.098 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHhcCC-----CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeC---CCcCHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGD-----KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS---QPLDLIKLQ 180 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~-----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs---~~~~~~~~~ 180 (837)
+++|. ++.++++..++... ..+++.|+|++|+||||+++.++.... ++..-|++.. ...+...+.
T Consensus 85 el~~~--~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~~ 157 (637)
T TIGR00602 85 ELAVH--KKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKVT 157 (637)
T ss_pred HhcCc--HHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhcccccccccc
Confidence 78887 66677787777542 336799999999999999999998652 2223342210 000001111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHH--H----hcCCeEEEEEeCCCCCc-----ccccccc-CCCCCCCCcEEEEEeC
Q 038611 181 TEIATALKESLPENEDKVSRAGRLLGM--L----KAKAKFVLILDDMWEAF-----PLEKVGI-PEPNKENGCKLVITTR 248 (837)
Q Consensus 181 ~~i~~~l~~~~~~~~~~~~~~~~l~~~--l----~~~k~~LlVlDdv~~~~-----~~~~l~~-~~~~~~~~s~iivTtR 248 (837)
..+..++.............+...... . ..+++.+|+||++.+.. .+..+.. .....+.-.-|++||-
T Consensus 158 ~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE 237 (637)
T TIGR00602 158 LSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITE 237 (637)
T ss_pred hhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecC
Confidence 122222221111101001111111000 0 13467899999995422 2333332 2212222234555552
Q ss_pred Ch-------------------hHhhhCCcceEEeccCCHHhHHHHHHHHhCCCC---CCCc-hhhHHHHHHHHHHhCCch
Q 038611 249 SY-------------------RVCRSMKCKQVEVELLSKEEAFNLFIDRVGSSI---LQVP-TLNREIINSIVEECGCLP 305 (837)
Q Consensus 249 ~~-------------------~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~~-~~~~~~~~~i~~~c~GlP 305 (837)
+. ++.....+..+..+|++.......+.+.+.... .... ..-.+....|+..++|.-
T Consensus 238 ~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 238 SLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred CccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 21 111122333388999999997777776654321 0100 002356777788888866
Q ss_pred hHHHHHHHhc
Q 038611 306 LAIVTVAASM 315 (837)
Q Consensus 306 Lai~~~~~~l 315 (837)
-.+.....+.
T Consensus 318 RsAIn~LQf~ 327 (637)
T TIGR00602 318 RSAINSLQFS 327 (637)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 162
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.0012 Score=72.25 Aligned_cols=133 Identities=19% Similarity=0.162 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCcc
Q 038611 117 KVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENED 196 (837)
Q Consensus 117 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 196 (837)
....++.+.+..... ++.|+|+-++||||+++.+..... +. .+++..-+...-..-+.+...
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l~d~~~----------- 85 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIELLDLLR----------- 85 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhHHHHHH-----------
Confidence 344455555544433 999999999999999976665541 11 566654332211111111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhH-----hhhCCcce--EEeccCCHH
Q 038611 197 KVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRV-----CRSMKCKQ--VEVELLSKE 269 (837)
Q Consensus 197 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v-----~~~~~~~~--~~l~~L~~~ 269 (837)
...... ..++..|+||.|.....|+.....+.+.+.. +|++|+-+... ++...... +.+-|||..
T Consensus 86 ------~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 86 ------AYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred ------HHHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111 2267899999999999998876666554555 88888888654 23222223 899999999
Q ss_pred hHHHHH
Q 038611 270 EAFNLF 275 (837)
Q Consensus 270 ~~~~Lf 275 (837)
|...+-
T Consensus 158 Efl~~~ 163 (398)
T COG1373 158 EFLKLK 163 (398)
T ss_pred HHHhhc
Confidence 887653
No 163
>PRK08118 topology modulation protein; Reviewed
Probab=97.47 E-value=6.2e-05 Score=71.68 Aligned_cols=36 Identities=28% Similarity=0.658 Sum_probs=29.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEE
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 167 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 167 (837)
+.|.|+|++|+||||||+.+++......-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987433356777776
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.46 E-value=0.0017 Score=78.49 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=88.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.++|| +.++.++++.|......-+.++|++|+|||++|+.++....... ......+|.- ++..+. .
T Consensus 174 ~~igr--~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 174 PVIGR--DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred cCCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h
Confidence 68999 67899999999877667777999999999999999998762210 0012233321 111111 0
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhc-CCeEEEEEeCCCCCc---------cccccccCCCCCCCC-cEEEEEeCChhH--
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKA-KAKFVLILDDMWEAF---------PLEKVGIPEPNKENG-CKLVITTRSYRV-- 252 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~-s~iivTtR~~~v-- 252 (837)
+. ....+....+..++..+.. +++.+|++|+++.-. +...+..+.. ..| -++|-+|...+.
T Consensus 243 --~~--~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 --GA--KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRK 316 (852)
T ss_pred --cc--hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHH
Confidence 00 0112233445555555532 468999999997431 1112222222 223 345544444332
Q ss_pred ------hhhCCcceEEeccCCHHhHHHHHHHHh
Q 038611 253 ------CRSMKCKQVEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 253 ------~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 279 (837)
+-......+.+...+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111122337888889999999887653
No 165
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=1.4e-05 Score=88.12 Aligned_cols=106 Identities=24% Similarity=0.240 Sum_probs=80.9
Q ss_pred ccceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 539 NLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 539 ~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
.|.+.+.++ +.+..+. ++.-++.|+.|+|++|++.... .+..|++|+||||+.|.+..+|.-.-..+ .|+.|++ .
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l-r 240 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL-R 240 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee-c
Confidence 455666665 5566677 7888999999999999888775 78889999999999999998886212233 4999999 4
Q ss_pred cchhhhhhHHHHhhhhhccCeeEEeeccccchhh
Q 038611 618 GWEALEETVEETGRLSDRLDTFEGHFSKLNNFNI 651 (837)
Q Consensus 618 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~ 651 (837)
++.. ..+..+.+| ++|+.|++++|-+.++..
T Consensus 241 nN~l--~tL~gie~L-ksL~~LDlsyNll~~hse 271 (1096)
T KOG1859|consen 241 NNAL--TTLRGIENL-KSLYGLDLSYNLLSEHSE 271 (1096)
T ss_pred ccHH--HhhhhHHhh-hhhhccchhHhhhhcchh
Confidence 4433 345677888 999999999997766443
No 166
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00032 Score=65.97 Aligned_cols=104 Identities=25% Similarity=0.291 Sum_probs=71.0
Q ss_pred hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC--hhhhcccccc
Q 038611 464 WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP--NSVSDLMNLI 541 (837)
Q Consensus 464 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~ 541 (837)
|......+++..|++..++ .++.++.|.+|.+..| .+..|.+.+-..+++|..|.|.+|.|..+. ..+..++.|+
T Consensus 40 ~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccccceecccccchhhcc--cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 3445667777777776653 3577788888888877 677777776566777888888888876553 2355677778
Q ss_pred eecccCccccCCCc-----cccccCCCCEEeccCC
Q 038611 542 SLLLQRCRRLKRVP-----SVAKLLALQHLDLRGT 571 (837)
Q Consensus 542 ~L~L~~~~~l~~lp-----~~~~l~~L~~L~l~~~ 571 (837)
+|.+-+| .++..+ -+.++++|++||+..-
T Consensus 117 ~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence 8877774 344333 1677777777777654
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.38 E-value=0.0004 Score=63.43 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=43.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCC-
Q 038611 134 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKA- 212 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k- 212 (837)
|.|+|++|+||||+|+.+++... ..++.++.+.-.+. ...+....+....+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccc----------------ccccccccccccccccccccc
Confidence 57999999999999999999861 22455544332110 11223334444444443344
Q ss_pred eEEEEEeCCCCC
Q 038611 213 KFVLILDDMWEA 224 (837)
Q Consensus 213 ~~LlVlDdv~~~ 224 (837)
+.+|++||++..
T Consensus 59 ~~vl~iDe~d~l 70 (132)
T PF00004_consen 59 PCVLFIDEIDKL 70 (132)
T ss_dssp SEEEEEETGGGT
T ss_pred ceeeeeccchhc
Confidence 899999999753
No 168
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0059 Score=60.11 Aligned_cols=182 Identities=21% Similarity=0.262 Sum_probs=107.4
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeC-CCcCHHHHHHHHHHHhcCCCCCC-ccHHHH-HHH
Q 038611 127 MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS-QPLDLIKLQTEIATALKESLPEN-EDKVSR-AGR 203 (837)
Q Consensus 127 ~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~-~~~ 203 (837)
..++-.++.++|.-|.|||.+.+++.... . -+.++-|.+. ...+...+...|+..+....... ...... ...
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~----~-~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASL----N-EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRE 121 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhc----C-CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHH
Confidence 34556799999999999999999555443 1 1222224433 34567778888888887732211 112222 233
Q ss_pred HHHHHhcCCe-EEEEEeCCCCC--ccccccccC---CCCCCCCcEEEEEeCCh-------hHhhhCC--cce-EEeccCC
Q 038611 204 LLGMLKAKAK-FVLILDDMWEA--FPLEKVGIP---EPNKENGCKLVITTRSY-------RVCRSMK--CKQ-VEVELLS 267 (837)
Q Consensus 204 l~~~l~~~k~-~LlVlDdv~~~--~~~~~l~~~---~~~~~~~s~iivTtR~~-------~v~~~~~--~~~-~~l~~L~ 267 (837)
+.....+++| ..+++||..+. ..++.+... -.+...--+|+..-..+ .+.+..+ +.. |.+.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 4444456777 89999998754 222222111 11111111233322110 1111111 222 8999999
Q ss_pred HHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 268 KEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 268 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
.++...++....+....+++-.-.+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999998888776554344333567788999999999999988764
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.33 E-value=0.0037 Score=68.09 Aligned_cols=152 Identities=15% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-+.++|++|.|||++|+.+++.. ...| +.+..+ .+.... ++ .....+..+.....
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~s------~l~~k~---~g-------e~~~~lr~lf~~A~ 235 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVGS------EFVQKY---LG-------EGPRMVRDVFRLAR 235 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH------HHHHHh---cc-------hhHHHHHHHHHHHH
Confidence 35789999999999999999999875 2222 222111 111110 11 11222334444444
Q ss_pred cCCeEEEEEeCCCCCc------------c----ccccccCCC--CCCCCcEEEEEeCChhHhhh--C---Ccce-EEecc
Q 038611 210 AKAKFVLILDDMWEAF------------P----LEKVGIPEP--NKENGCKLVITTRSYRVCRS--M---KCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~~s~iivTtR~~~v~~~--~---~~~~-~~l~~ 265 (837)
...+.+|+||+++... . +..+...+. ....+..||.||...+.... . .... +.+..
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 5678999999986421 0 111111111 12345678888876543211 1 2233 88888
Q ss_pred CCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 266 LSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 266 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
.+.++...+|+............ ...++++.+.|..-|
T Consensus 316 P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~sga 353 (398)
T PTZ00454 316 PDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKISAA 353 (398)
T ss_pred cCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCCHH
Confidence 89888888887665432111111 134566677665433
No 170
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.33 E-value=3.9e-05 Score=67.16 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=23.2
Q ss_pred ccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccC
Q 038611 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQR 547 (837)
Q Consensus 492 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 547 (837)
|...++++| .+..+|+.+-..++.++.|+|++|.+..+|..+..++.||.|+++.
T Consensus 55 l~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 55 LTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred EEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 333444444 3344444433333344444444444444444444444444444443
No 171
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.29 E-value=0.0014 Score=71.83 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+.+.++|++|.|||++|+.+++.. ...| +.+..++ +. .... ......+..+.....
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se------L~----~k~~------Ge~~~~vr~lF~~A~ 273 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE------LI----QKYL------GDGPKLVRELFRVAE 273 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch------hh----hhhc------chHHHHHHHHHHHHH
Confidence 35678899999999999999999875 2233 2222111 11 1110 011122333333333
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhHhhh--C---Ccce-EEecc
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRVCRS--M---KCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v~~~--~---~~~~-~~l~~ 265 (837)
.+.+.+|+||+++.... +..+...+. ....+.+||.||...+.... . .... +.+..
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 56788999999853210 001111111 11335678888876544222 1 1223 88999
Q ss_pred CCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh
Q 038611 266 LSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL 306 (837)
Q Consensus 266 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 306 (837)
.+.++..++|............. ....++..+.|.--
T Consensus 354 Pd~~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~sg 390 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDELSG 390 (438)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCCCH
Confidence 99999999998776433111111 13455556655443
No 172
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0083 Score=63.07 Aligned_cols=185 Identities=12% Similarity=0.118 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCe-----EEEEEeCCCcCHHHHHHHHHHHhcC
Q 038611 116 KKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-----VIWVTVSQPLDLIKLQTEIATALKE 189 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-----~~wv~vs~~~~~~~~~~~i~~~l~~ 189 (837)
+...+.+...+..+++ +.+.++|+.|+||+++|..+++..--. +...+ +-|+..+..+|+.-+-.. -+.-+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~-~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~~~ 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS-GPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRTGD 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC-CCCCCCcchHHHHHhcCCCCCEEEEecC-CCcccc
Confidence 3456677777777664 679999999999999999998765211 10000 001111111110000000 000000
Q ss_pred CCCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCC-hhHhhh--CCcce
Q 038611 190 SLPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRS-YRVCRS--MKCKQ 260 (837)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~--~~~~~ 260 (837)
. ....-..+.+.++.+.+. .+++-++|+|+++... .-+.+...+-.-..++.+|++|.. ..+... ..+..
T Consensus 88 k-~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 88 K-LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQR 166 (319)
T ss_pred c-ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheE
Confidence 0 000011233333433331 3456788999998642 222222222222345666666654 333322 23445
Q ss_pred EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 261 VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+.+.+++.+++.+.+.+. +. ....+..++..++|.|+.+..+.
T Consensus 167 i~~~~~~~~~~~~~L~~~-~~--------~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 167 LEFKLPPAHEALAWLLAQ-GV--------SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eeCCCcCHHHHHHHHHHc-CC--------ChHHHHHHHHHcCCCHHHHHHHh
Confidence 899999999998887653 21 12336678999999998776544
No 173
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.27 E-value=0.00076 Score=67.12 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=30.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
-.++|+|..|.|||||+..+.... ...|.++++++-..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~~~ 51 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITPEY 51 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEecCC
Confidence 467899999999999999998876 46788887775433
No 174
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=0.00026 Score=82.18 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=58.4
Q ss_pred CcccEEEccCCcCc-cccChhHhhcCCCCcEEEecCCCCc--ccChhhhcccccceecccCccccCCCccccccCCCCEE
Q 038611 490 EILSTLLLQRNINL-QWIPECFFAHMHGLKILNLSFTAIE--VLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHL 566 (837)
Q Consensus 490 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 566 (837)
.+|+.|+++|...+ ..+|..+-..+|.|+.|.+++-.+. .+-.-..++++|+.||+++ ++++.+..+++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHH
Confidence 45666666665322 2344444455677777777665432 2222334566667777766 345555556666666666
Q ss_pred eccCCcCcccc--ccccCCCCCCEEeccCCC
Q 038611 567 DLRGTSIEEVP--EGMQMLENLSHLYLYSPP 595 (837)
Q Consensus 567 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~ 595 (837)
.+++=.++.-+ ..+-+|++|+.||+|...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66654444322 234566666666666543
No 175
>PRK08116 hypothetical protein; Validated
Probab=97.20 E-value=0.00064 Score=70.06 Aligned_cols=101 Identities=29% Similarity=0.341 Sum_probs=58.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAK 211 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 211 (837)
..+.++|..|+|||.||.++++..... ...+++++ ..+++..|........ ... ...+.+.+ .+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l-~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSL-VN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHh-cC
Confidence 468999999999999999999987322 34566765 3445555555443211 111 12233444 33
Q ss_pred CeEEEEEeCCCC--Cccccc--cccCCCC-CCCCcEEEEEeCC
Q 038611 212 AKFVLILDDMWE--AFPLEK--VGIPEPN-KENGCKLVITTRS 249 (837)
Q Consensus 212 k~~LlVlDdv~~--~~~~~~--l~~~~~~-~~~~s~iivTtR~ 249 (837)
-. ||||||+.. ..+|.. +...+.. -..+..+|+||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33 899999953 233322 2111111 1345568888875
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.0063 Score=65.29 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=87.5
Q ss_pred ccccchhHHHHHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 110 LVGEKTKKVVEIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
++|-.-.........+.... ....+.|+|..|.|||-|++++.+... ....=..+++++ .......++..+
T Consensus 90 v~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~-~~~~~a~v~y~~------se~f~~~~v~a~ 162 (408)
T COG0593 90 VVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEAL-ANGPNARVVYLT------SEDFTNDFVKAL 162 (408)
T ss_pred eeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHH-hhCCCceEEecc------HHHHHHHHHHHH
Confidence 44543333333333444332 468999999999999999999999872 222112344442 233344444443
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---cccc-cccCCCC-CCCCcEEEEEeCChh---------Hh
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---PLEK-VGIPEPN-KENGCKLVITTRSYR---------VC 253 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~-l~~~~~~-~~~~s~iivTtR~~~---------v~ 253 (837)
.. .......+.+ .-=++++||++--. .|++ +...+.. ...|..||+|++... +.
T Consensus 163 ~~---------~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~ 230 (408)
T COG0593 163 RD---------NEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR 230 (408)
T ss_pred Hh---------hhHHHHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH
Confidence 32 1122222222 23378899997532 2222 2222211 133448999996632 34
Q ss_pred hhCCcce-EEeccCCHHhHHHHHHHHhCCC
Q 038611 254 RSMKCKQ-VEVELLSKEEAFNLFIDRVGSS 282 (837)
Q Consensus 254 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~ 282 (837)
.+..... +.+.+.+.+.....+.+.+...
T Consensus 231 SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 231 SRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred HHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 4455555 8999999999999998877554
No 177
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.16 E-value=0.0038 Score=61.67 Aligned_cols=49 Identities=27% Similarity=0.492 Sum_probs=36.8
Q ss_pred CCCccccccchhHHHHHH----HHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 105 LPTETLVGEKTKKVVEII----WENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 105 ~~~~~~vGr~~~~~~~~l----~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+...++|-+ +.++.| ..++.+....-+.+||..|.|||++++++.+.+
T Consensus 24 ~~l~~L~Gie--~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 24 IRLDDLIGIE--RQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCHHHhcCHH--HHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3445889984 444444 345555667788889999999999999999987
No 178
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=7e-05 Score=65.65 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=71.9
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceeccc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQ 546 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 546 (837)
.+..+++++|.+..+|..+...++.+.+|++.+| .+..+|.. +..++.||.|+++.|.+...|..|..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 5677899999999998888888888999999988 78889988 589999999999999999999888888888888887
Q ss_pred CccccCCCc
Q 038611 547 RCRRLKRVP 555 (837)
Q Consensus 547 ~~~~l~~lp 555 (837)
++ -...+|
T Consensus 132 ~n-a~~eid 139 (177)
T KOG4579|consen 132 EN-ARAEID 139 (177)
T ss_pred CC-ccccCc
Confidence 74 344444
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0084 Score=64.06 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=82.2
Q ss_pred cccc-cchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 109 TLVG-EKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 109 ~~vG-r~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.++| . +..++.+...+..++ .+++.++|+.|+||||+|+.+.+..--. +..... .++.. ...+.+...
T Consensus 6 ~i~~~q--~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~---~cg~C----~~c~~~~~~ 75 (329)
T PRK08058 6 QLTALQ--PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE---PCGTC----TNCKRIDSG 75 (329)
T ss_pred HHHhhH--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC---CCCcC----HHHHHHhcC
Confidence 4556 4 556777878877766 4677999999999999999998775211 100000 00000 000011000
Q ss_pred hcCC-----CCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChh-Hhh
Q 038611 187 LKES-----LPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYR-VCR 254 (837)
Q Consensus 187 l~~~-----~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~-v~~ 254 (837)
-..+ ........+.+..+.+.+. .+.+-++|+|+++... ..+.+...+..-..++.+|++|.+.. +..
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 0000 0000111222333333321 3455678999987542 23333333322244566666665533 322
Q ss_pred --hCCcceEEeccCCHHhHHHHHHH
Q 038611 255 --SMKCKQVEVELLSKEEAFNLFID 277 (837)
Q Consensus 255 --~~~~~~~~l~~L~~~~~~~Lf~~ 277 (837)
...+..+++.+++.++....+.+
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHH
Confidence 22344489999999998877764
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.016 Score=61.14 Aligned_cols=177 Identities=8% Similarity=0.056 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCC-----
Q 038611 117 KVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKES----- 190 (837)
Q Consensus 117 ~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~----- 190 (837)
..-+.+...+..+. .+.+.+.|+.|+||+++|+.++...--.. ... ....+.-...+.+...-..+
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQG-------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34566777777665 47888999999999999999998752111 000 00000001111111000000
Q ss_pred -CCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCCh-hHhhh--CCcce
Q 038611 191 -LPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY-RVCRS--MKCKQ 260 (837)
Q Consensus 191 -~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~--~~~~~ 260 (837)
..+..-..+.+.++.+.+. .+++-++|+|+++... ..+.+...+-.-..++.+|++|.+. .+... ..+..
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0001112333334433331 3566678899998653 3333332222223455666666554 44322 23555
Q ss_pred EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHH
Q 038611 261 VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIV 309 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 309 (837)
+.+.+++.+++.+.+....+.. ...+...++.++|.|+.+.
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 9999999999998887654321 1235567888999996443
No 181
>CHL00176 ftsH cell division protein; Validated
Probab=97.15 E-value=0.0025 Score=73.59 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=93.3
Q ss_pred cccccch-hHHHHHHHHHhcCC---------CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 109 TLVGEKT-KKVVEIIWENLMGD---------KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 109 ~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
.+.|.+. .+.+.++++.+... ..+-|.++|++|.|||++|+.+++.. ... |+.++.. +
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----H
Confidence 6778743 34455555555432 24679999999999999999998864 111 2332211 1
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc------------c----ccccccCCC--CCCCC
Q 038611 179 LQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF------------P----LEKVGIPEP--NKENG 240 (837)
Q Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~~ 240 (837)
+.... .+ .....+..+........+.+|+|||++... . +..+...+. ....+
T Consensus 252 f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11000 00 011233344444446778999999996421 0 112211111 12345
Q ss_pred cEEEEEeCChhHhhh-----CCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCc
Q 038611 241 CKLVITTRSYRVCRS-----MKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCL 304 (837)
Q Consensus 241 s~iivTtR~~~v~~~-----~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 304 (837)
..||.||...+.... ..... +.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 566667766443211 11223 7888889999888888876543111 123456777777773
No 182
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.14 E-value=0.013 Score=66.77 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=89.7
Q ss_pred cccccch-hHHHHHHHHHhcC---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 109 TLVGEKT-KKVVEIIWENLMG---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 109 ~~vGr~~-~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
+++|.+. .+.+.+++.++.. ...+-+.++|++|.|||++|+.+++.. ... ++.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccH----HH
Confidence 6777633 2233444444432 224568999999999999999998864 112 222221 11
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc----c------------ccccccCCC--CCCCC
Q 038611 179 LQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF----P------------LEKVGIPEP--NKENG 240 (837)
Q Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----~------------~~~l~~~~~--~~~~~ 240 (837)
+.... .+ .....+..+.+......+.+|+|||++... . ...+...+. ....+
T Consensus 124 ~~~~~---~g-------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 FVEMF---VG-------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHHHH---hc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11110 01 012233344444445567899999996421 0 011111111 11234
Q ss_pred cEEEEEeCChhH-----hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 241 CKLVITTRSYRV-----CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 241 s~iivTtR~~~v-----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
..||.||..... .+...... +.+...+.++-.++|...+....... ......+++.+.|..
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFS 260 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCC
Confidence 456666655432 11112333 88888898888888887765431111 112457778887744
No 183
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.14 E-value=0.0039 Score=69.46 Aligned_cols=137 Identities=13% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH-
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGM- 207 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 207 (837)
++-+.++|++|.|||++|+++++...... ..+....|+.++.. +++ .... ......+..+.+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~----eLl----~kyv------Gete~~ir~iF~~A 281 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP----ELL----NKYV------GETERQIRLIFQRA 281 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch----hhc----cccc------chHHHHHHHHHHHH
Confidence 56799999999999999999999862210 01223445544331 111 1000 0111111222221
Q ss_pred ---HhcCCeEEEEEeCCCCCc---------cc-----cccccCCCC--CCCCcEEEEEeCChhHhh----h-CCcce-EE
Q 038611 208 ---LKAKAKFVLILDDMWEAF---------PL-----EKVGIPEPN--KENGCKLVITTRSYRVCR----S-MKCKQ-VE 262 (837)
Q Consensus 208 ---l~~~k~~LlVlDdv~~~~---------~~-----~~l~~~~~~--~~~~s~iivTtR~~~v~~----~-~~~~~-~~ 262 (837)
...+++.+|+||+++... +. ..+...+.+ ...+..||.||...+... . ..... +.
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR 361 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence 123578999999997421 11 122211211 123444555665544311 1 12233 89
Q ss_pred eccCCHHhHHHHHHHHhCC
Q 038611 263 VELLSKEEAFNLFIDRVGS 281 (837)
Q Consensus 263 l~~L~~~~~~~Lf~~~~~~ 281 (837)
++..+.++..++|..++..
T Consensus 362 ~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 362 IERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eCCCCHHHHHHHHHHHhhc
Confidence 9999999999999988754
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.0046 Score=65.48 Aligned_cols=103 Identities=12% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHHhcC-CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCe-EEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCc
Q 038611 119 VEIIWENLMG-DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQP-LDLIKLQTEIATALKESLPENE 195 (837)
Q Consensus 119 ~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~ 195 (837)
..++++.+.. +...-+.|+|.+|+|||||++.+++.... ++-+. ++|+.+.+. ..+.++.+.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446666653 34567799999999999999999997632 22233 477777765 4678888888887765432222
Q ss_pred cHH-----HHHHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 196 DKV-----SRAGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 196 ~~~-----~~~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
... ..+....+.+ ..+++.+||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 211 1222233333 368999999999964
No 185
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0024 Score=70.54 Aligned_cols=186 Identities=16% Similarity=0.201 Sum_probs=107.9
Q ss_pred ccccccchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.++||. +..+..|...+..++ .......|+-|+||||+|+-++...--. + + ....+++.-...++|...
T Consensus 16 ~evvGQ--e~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~--~-----~-~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQ--EHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE--N-----G-PTAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhccc--HHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC--C-----C-CCCCcchhhhhhHhhhcC
Confidence 377998 567777778887765 4788899999999999999998765111 0 1 111222222223333222
Q ss_pred hcCCC----CCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCC--CccccccccCCCCCCCCcEEEEEeCC-hhHhh-
Q 038611 187 LKESL----PENEDKVSRAGRLLGMLK----AKAKFVLILDDMWE--AFPLEKVGIPEPNKENGCKLVITTRS-YRVCR- 254 (837)
Q Consensus 187 l~~~~----~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~- 254 (837)
-..+. .......+.+..+.+... .++.=+.|+|.|+- ...|..+...+-.--...+.|+.|.+ +.+..
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 00000 000112333444444442 44556788999974 45566554444322334455554444 44422
Q ss_pred -hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh
Q 038611 255 -SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL 306 (837)
Q Consensus 255 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 306 (837)
...|..|.++.++.++-...+...+....... ..+....|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 22344599999999999999988887664443 45666777777777443
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.03 E-value=0.0063 Score=57.59 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC-----------------CCCeEEEEEeCCC---c
Q 038611 116 KKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN-----------------KFNVVIWVTVSQP---L 174 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~vs~~---~ 174 (837)
++..+.+.+.+..++. ..+.++|+.|+||+|+|..+++..--... ...-+.|+.-... .
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i 82 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSI 82 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSB
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchh
Confidence 5567777778877765 67899999999999999999887521111 1122333332221 2
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCChhH
Q 038611 175 DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRSYRV 252 (837)
Q Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~~~v 252 (837)
..+++. ++...+.... ..+++=++|+||++.. .....+...+-.-..++.+|++|++.+-
T Consensus 83 ~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 83 KIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred hHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 232222 3333332211 1345667899999864 3344333333233457788888887552
Q ss_pred -h-h-hCCcceEEeccCC
Q 038611 253 -C-R-SMKCKQVEVELLS 267 (837)
Q Consensus 253 -~-~-~~~~~~~~l~~L~ 267 (837)
. + ...+..+.+.++|
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 2 1 1233336666654
No 187
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.02 E-value=0.0004 Score=70.74 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.8
Q ss_pred CCCcEEEEeeec
Q 038611 705 EDVQCLEMFEVY 716 (837)
Q Consensus 705 ~~L~~L~l~~~~ 716 (837)
+.|.+|++.+|.
T Consensus 298 ~dL~kLnLngN~ 309 (382)
T KOG1909|consen 298 PDLEKLNLNGNR 309 (382)
T ss_pred hhhHHhcCCccc
Confidence 445555554443
No 188
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.00 E-value=0.0025 Score=61.23 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=63.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
++||- ++.++.+.-...+++++-+.|.||+|+||||-+..+++.. -....-+.+.-.++|+...+.-+-..|-.--.
T Consensus 28 dIVGN--e~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ 104 (333)
T KOG0991|consen 28 DIVGN--EDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKIKMFAQ 104 (333)
T ss_pred HhhCC--HHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHHHHHHH
Confidence 78997 7778888778888999999999999999999999888876 21223344555555555444333332211100
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 224 (837)
. .-.+-.++.-+||||..++.
T Consensus 105 ~---------------kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 105 K---------------KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred h---------------hccCCCCceeEEEeeccchh
Confidence 0 00112456678899998865
No 189
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.013 Score=63.07 Aligned_cols=146 Identities=17% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
...+.+.|++|+|||+||..++.. ..|..+--++..+- +|.. +......+.+..+.--+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m-------------iG~s---EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM-------------IGLS---ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc-------------cCcc---HHHHHHHHHHHHHHhhc
Confidence 467788999999999999999865 46766544432111 0100 11111122222222224
Q ss_pred CCeEEEEEeCCCCCccccccccCC---------------CCCCCCcEEEEEeCChhHhhhCCcce-----EEeccCCH-H
Q 038611 211 KAKFVLILDDMWEAFPLEKVGIPE---------------PNKENGCKLVITTRSYRVCRSMKCKQ-----VEVELLSK-E 269 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~~~~l~~~~---------------~~~~~~s~iivTtR~~~v~~~~~~~~-----~~l~~L~~-~ 269 (837)
..--.||+||+..-.+|-.++..+ |..+..--|+-||....|...|+... |.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 556789999998777766555432 22223333555777788888776432 88998887 7
Q ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHh
Q 038611 270 EAFNLFIDRVGSSILQVPTLNREIINSIVEEC 301 (837)
Q Consensus 270 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 301 (837)
+..+.++..--.. ..+ .+.++.+...+|
T Consensus 677 ~~~~vl~~~n~fs-d~~---~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 677 QLLEVLEELNIFS-DDE---VRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHccCCC-cch---hHHHHHHHhccc
Confidence 7777776542111 122 556677777766
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.94 E-value=0.0053 Score=60.01 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKESLP---ENEDKVSRAGRLLG 206 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 206 (837)
++||.++|+.|+||||.+.+++...... -..+..++.... ....+-++..++.++.+.. ...+....+.+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4689999999999999999999887322 455777776432 2455567888888886532 22234444444444
Q ss_pred HHhcCCeEEEEEeCCC
Q 038611 207 MLKAKAKFVLILDDMW 222 (837)
Q Consensus 207 ~l~~~k~~LlVlDdv~ 222 (837)
.+...+.=+|++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 4433334467777663
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0099 Score=68.68 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=61.0
Q ss_pred cccccchhHHHHHHHHHhcC---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
.++|. +.+++.+.+.+.. ..+.+...+|+.|||||.||++++..+ ++.=+..+-++.|+-..-
T Consensus 492 rViGQ--d~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek--- 563 (786)
T COG0542 492 RVIGQ--DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK--- 563 (786)
T ss_pred ceeCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH---
Confidence 67888 6677777766631 134688889999999999999999876 222244555555442211
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeE-EEEEeCCCCC
Q 038611 180 QTEIATALKESLPENEDKVSRAGRLLGMLKAKAKF-VLILDDMWEA 224 (837)
Q Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 224 (837)
..+.+-+|.+..-.... ....+-+.. +.++| +|.||+|...
T Consensus 564 -HsVSrLIGaPPGYVGye--eGG~LTEaV-Rr~PySViLlDEIEKA 605 (786)
T COG0542 564 -HSVSRLIGAPPGYVGYE--EGGQLTEAV-RRKPYSVILLDEIEKA 605 (786)
T ss_pred -HHHHHHhCCCCCCceec--cccchhHhh-hcCCCeEEEechhhhc
Confidence 12233344432211111 012233333 56777 8889999753
No 192
>PHA00729 NTP-binding motif containing protein
Probab=96.93 E-value=0.0049 Score=60.67 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 121 IIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 121 ~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555556666789999999999999999999875
No 193
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.90 E-value=0.0043 Score=61.84 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 180 (837)
-+++.|+|.+|+|||++|.+++.... .....++|++... ++..++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHH
Confidence 47999999999999999999987752 2356799999875 5555544
No 194
>PRK09183 transposase/IS protein; Provisional
Probab=96.89 E-value=0.012 Score=60.39 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999998775
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=96.89 E-value=0.017 Score=68.15 Aligned_cols=155 Identities=10% Similarity=0.073 Sum_probs=91.7
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEE
Q 038611 139 MGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLIL 218 (837)
Q Consensus 139 ~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVl 218 (837)
+.++||||+|..++++.-. .+.-..++-+++|+..+...+. ++++.+....+ +...+.-++||
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 7889999999999998611 1111246777888765555443 33332221110 00224579999
Q ss_pred eCCCCCc--cccccccCCCCCCCCcEEEEEeCCh-hHhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHH
Q 038611 219 DDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY-RVCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREI 293 (837)
Q Consensus 219 Ddv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~-~v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~ 293 (837)
|+++... +.+.+...+-.....+++|+++.+. .+.. ...|..+++.+++.++....+...+......- ..+.
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~ 713 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEG 713 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHH
Confidence 9998753 3333333332223455666655553 3322 22344599999999998888776654322221 3557
Q ss_pred HHHHHHHhCCchhHHHHHHH
Q 038611 294 INSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 294 ~~~i~~~c~GlPLai~~~~~ 313 (837)
...|++.|+|.+..+..+..
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 88999999998865554443
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.033 Score=58.53 Aligned_cols=175 Identities=11% Similarity=0.103 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC----
Q 038611 117 KVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESL---- 191 (837)
Q Consensus 117 ~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---- 191 (837)
...+.+...+..++ .+.+.++|+.|+||+++|+.++...--...... .++.. .-.+.+...-..+.
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 34566667776665 478999999999999999999876521110000 00000 00111100000000
Q ss_pred C---CCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCC-hhHhhh--CCcc
Q 038611 192 P---ENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRS-YRVCRS--MKCK 259 (837)
Q Consensus 192 ~---~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~--~~~~ 259 (837)
+ +..-..+.+..+.+.+. .+.+-++|+|+++.. ...+.+...+-.-..++.+|++|.+ ..+... ..+.
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 0 00111222333333321 344567889999864 2333333333222344555555554 444332 2344
Q ss_pred eEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 260 QVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 260 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+.+.+++.+++.+.+.+. +.. .+..+++.++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~-~~~----------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQ-GIT----------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHc-CCc----------hHHHHHHHcCCCHHHHHHH
Confidence 5899999999999887643 111 1356788999999987655
No 197
>PRK10536 hypothetical protein; Provisional
Probab=96.87 E-value=0.0064 Score=60.93 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.++ ......++.++.+. .++.++|.+|.|||+||.++..+.
T Consensus 56 ~i~p~--n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILAR--NEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCC--CHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 44555 44566667777653 599999999999999999998863
No 198
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.0098 Score=63.31 Aligned_cols=179 Identities=10% Similarity=0.083 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhc-CCC-Ce-----EEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 117 KVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKET-NKF-NV-----VIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 117 ~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f-~~-----~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
..-+++...+..++ .+.+.+.|+.|+||+++|..++...--.. ... .| +.++..+..+|+..+ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 34566777777665 57888999999999999999987652100 000 00 001111111111100 0
Q ss_pred CCCCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCC-hhHhhh--CCcc
Q 038611 189 ESLPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRS-YRVCRS--MKCK 259 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~--~~~~ 259 (837)
.......-..+.+..+.+.+. .+++-++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+... ..+.
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000001112333444444332 3566788999998642 333333222222345555555555 444322 2344
Q ss_pred eEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 260 QVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 260 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+.+.+++.+++...+.+..+. ..+.+..+++.++|.|..+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~~--------~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVTM--------SQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccCCCCCHHHHHHHHHHccCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 5899999999998877654322 2234678899999999755433
No 199
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.0018 Score=61.94 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=25.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEE
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 167 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~w 167 (837)
.|.|+|++|+||||||+++........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998765222224455555
No 200
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.86 E-value=0.088 Score=56.50 Aligned_cols=195 Identities=12% Similarity=0.113 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHH-HHHHHHHHhhcCCCCeEEEEEeCCC---cCHHHHHHHHHHHhcC--
Q 038611 116 KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVVIWVTVSQP---LDLIKLQTEIATALKE-- 189 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~-- 189 (837)
.+..++|..||.+..-..|.|.|+-|.||+.|+ .++.++. ..+..+.+.+- .+-..+.+.++.++|-
T Consensus 2 ~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 2 KEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred chHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 356788999999888899999999999999999 6665542 22667765542 2334455555555431
Q ss_pred ----------------------CCCCCccHHHHHHHHHHHH--------h---------------------cCCeEEEEE
Q 038611 190 ----------------------SLPENEDKVSRAGRLLGML--------K---------------------AKAKFVLIL 218 (837)
Q Consensus 190 ----------------------~~~~~~~~~~~~~~l~~~l--------~---------------------~~k~~LlVl 218 (837)
...-.......+..++... + ..++=+|||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1111122222222221110 0 113568999
Q ss_pred eCCCCCc-----------cccccccCCCCCCCCcEEEEEeCChhH----hhhCCcce---EEeccCCHHhHHHHHHHHhC
Q 038611 219 DDMWEAF-----------PLEKVGIPEPNKENGCKLVITTRSYRV----CRSMKCKQ---VEVELLSKEEAFNLFIDRVG 280 (837)
Q Consensus 219 Ddv~~~~-----------~~~~l~~~~~~~~~~s~iivTtR~~~v----~~~~~~~~---~~l~~L~~~~~~~Lf~~~~~ 280 (837)
|+.-... +|... + -..+-..||++|-+... ........ +.|...+++.|..+......
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---L-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---H-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9986432 23221 1 12445578888877544 33343333 88999999999999998875
Q ss_pred CCCCC-------------Cc----hhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCH
Q 038611 281 SSILQ-------------VP----TLNREIINSIVEECGCLPLAIVTVAASMSGEEEI 321 (837)
Q Consensus 281 ~~~~~-------------~~----~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~ 321 (837)
..... .. .....-....+...||--.=+..+++.++...++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 43100 00 1134455677788999999999999988875543
No 201
>PRK08181 transposase; Validated
Probab=96.83 E-value=0.0017 Score=66.53 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=57.9
Q ss_pred HHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHH
Q 038611 124 ENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGR 203 (837)
Q Consensus 124 ~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 203 (837)
+|+.. ..-+.|+|++|+|||.||..+.+.... ....++|+++ .++...+..... ... ..+
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~------~~L~~~l~~a~~-----~~~----~~~ 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT------TDLVQKLQVARR-----ELQ----LES 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH------HHHHHHHHHHHh-----CCc----HHH
Confidence 45543 356999999999999999999987632 2334566643 445554433321 111 112
Q ss_pred HHHHHhcCCeEEEEEeCCCCC--ccc-c-ccccCCCCCCCCcEEEEEeCCh
Q 038611 204 LLGMLKAKAKFVLILDDMWEA--FPL-E-KVGIPEPNKENGCKLVITTRSY 250 (837)
Q Consensus 204 l~~~l~~~k~~LlVlDdv~~~--~~~-~-~l~~~~~~~~~~s~iivTtR~~ 250 (837)
..+.+ .+.=||||||+... ..+ . .+...+.....+..+||||...
T Consensus 161 ~l~~l--~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 161 AIAKL--DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHH--hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 33333 24569999999643 111 1 1221121111123688888763
No 202
>PRK06921 hypothetical protein; Provisional
Probab=96.79 E-value=0.003 Score=64.98 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
....+.++|..|+|||.||.++++.... .....++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 4578999999999999999999998732 21345677764
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.78 E-value=0.0012 Score=59.32 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 204
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.75 E-value=0.0023 Score=60.40 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=53.5
Q ss_pred CcEEEecCCCCcccChhhhcccccceecccCccccCCC-ccc-cccCCCCEEeccCCcCccccc--cccCCCCCCEEecc
Q 038611 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRV-PSV-AKLLALQHLDLRGTSIEEVPE--GMQMLENLSHLYLY 592 (837)
Q Consensus 517 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~-~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~ 592 (837)
...+||++|.+..++ .+..++.|.+|.|++|. +..+ |.+ .-+++|..|.+.+|+|.++-+ .+..+++|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 344555555544443 23444555555555432 2222 232 234456666666665555432 34567778888877
Q ss_pred CCCCCCCC---CCcccCCccCcEEEc
Q 038611 593 SPPLKELP---AGLLPRLRKLCRLSL 615 (837)
Q Consensus 593 ~~~l~~~p---~~~l~~l~~L~~L~l 615 (837)
+|...+.. .-++.++++|++|++
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeeh
Confidence 77655433 234678888888887
No 205
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00048 Score=67.71 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=27.4
Q ss_pred cCCCCcEEEecCCCCcccChhhhcccccceecccCc--cccCCCc-cccccCCCCEEeccCCcCc
Q 038611 513 HMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRC--RRLKRVP-SVAKLLALQHLDLRGTSIE 574 (837)
Q Consensus 513 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~--~~l~~lp-~~~~l~~L~~L~l~~~~i~ 574 (837)
.+..|..|++.++.++++- .+-.|++|++|.++.| .....++ ...++++|++|++++|+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444444433322 2234556666666655 2222333 3333455555555555433
No 206
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.73 E-value=0.01 Score=70.79 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=56.0
Q ss_pred cccccchhHHHHHHHHHhcC--------CC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--------DK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--------~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
.++|. +..++.+...+.. ++ ..++.++|+.|+|||+||+.++... +...+.++.++-.+..
T Consensus 455 ~v~GQ--~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~-- 524 (731)
T TIGR02639 455 KIFGQ--DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKH-- 524 (731)
T ss_pred ceeCc--HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcc--
Confidence 56776 4556666655531 12 3468899999999999999998865 2334556555422211
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 038611 180 QTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 224 (837)
.+...++....... ......+.+.+.....-+++||+++..
T Consensus 525 --~~~~lig~~~gyvg--~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 --TVSRLIGAPPGYVG--FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --cHHHHhcCCCCCcc--cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11222332211100 011122333333334469999999854
No 207
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.70 E-value=0.044 Score=56.10 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=93.8
Q ss_pred ccccccchhHHHHHHHHHhc----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH-HHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLM----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK-LQTE 182 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~-~~~~ 182 (837)
..++|- .++..++-+++. .++..-+.|+|+.|.|||+|......+.+... +...-|......-.++ .++.
T Consensus 24 ~~l~g~--~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~---E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGV--QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENG---ENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeeh--HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcC---CeEEEEEECccchhhHHHHHH
Confidence 356776 445555555554 35677888999999999999988877743333 3344454443332222 3455
Q ss_pred HHHHhc----CCCCCCccHHHHHHHHHHHHhcC-----CeEEEEEeCCCCCcc-------ccccccCCCCCCCCcEEEEE
Q 038611 183 IATALK----ESLPENEDKVSRAGRLLGMLKAK-----AKFVLILDDMWEAFP-------LEKVGIPEPNKENGCKLVIT 246 (837)
Q Consensus 183 i~~~l~----~~~~~~~~~~~~~~~l~~~l~~~-----k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~~s~iivT 246 (837)
|.+|+. ..........+.+..++..+..+ -+.+.|+|.++-... +.-+-..-....+-|.|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 555543 22222333445566666666432 357888888764321 11111111123566778899
Q ss_pred eCChhH-------hhhCCcce-EEeccCCHHhHHHHHHHHh
Q 038611 247 TRSYRV-------CRSMKCKQ-VEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 247 tR~~~v-------~~~~~~~~-~~l~~L~~~~~~~Lf~~~~ 279 (837)
||-... -....... +-+++++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 997432 22223333 4556677777777776655
No 208
>PRK06526 transposase; Provisional
Probab=96.69 E-value=0.0013 Score=67.06 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...-+.|+|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34678999999999999999999876
No 209
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.69 E-value=0.0038 Score=56.69 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=54.8
Q ss_pred CCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecccCccccCCCc--cc
Q 038611 481 IPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQRCRRLKRVP--SV 557 (837)
Q Consensus 481 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp--~~ 557 (837)
++...|..|++|+.+.+.. .+..++...|.++..|+.+.+..+ +..++. .+..+.+|+.+.+.+ .+..++ .+
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 3445567777777777663 356677777777777777777664 555542 345555677777754 344444 35
Q ss_pred cccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccC
Q 038611 558 AKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKL 610 (837)
Q Consensus 558 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 610 (837)
..+.+|+.+++..+ +..++.. +.++ +|+.+.+.. .+..++...+.+.++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55677777777554 4444443 3454 677776654 4555555555555554
No 210
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.34 Score=52.09 Aligned_cols=167 Identities=15% Similarity=0.176 Sum_probs=91.8
Q ss_pred hHHHHHHHHHhcCCC---------CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 116 KKVVEIIWENLMGDK---------APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~---------~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
++.++.+.+++.+.+ -+-..++|++|.|||++..+++|.+ .|+. .-...+..
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v------------- 271 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEV------------- 271 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccc-------------
Confidence 344555555555432 2677899999999999999999986 2332 11111111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccc-----------c---------ccccCCC--CCCC-CcEE
Q 038611 187 LKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPL-----------E---------KVGIPEP--NKEN-GCKL 243 (837)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----------~---------~l~~~~~--~~~~-~s~i 243 (837)
.+..+ +.+|+.. ...+-+||+.|++-..++ . -+...+. +... +-||
T Consensus 272 --------~~n~d-Lr~LL~~--t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI 340 (457)
T KOG0743|consen 272 --------KLDSD-LRHLLLA--TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI 340 (457)
T ss_pred --------cCcHH-HHHHHHh--CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE
Confidence 11111 2333322 345788899998743111 1 0111111 1122 2355
Q ss_pred E-EEeCChhH---h--hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHh-c
Q 038611 244 V-ITTRSYRV---C--RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAAS-M 315 (837)
Q Consensus 244 i-vTtR~~~v---~--~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~-l 315 (837)
| +||-..+- | +....+. +.+.-=+.+....||....+... . ..+..+|.+...|.-+.-..++.. |
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 5 46665443 1 1112222 78888999999999999988763 1 235566666666766665555544 4
Q ss_pred cCC
Q 038611 316 SGE 318 (837)
Q Consensus 316 ~~~ 318 (837)
+.+
T Consensus 415 ~~~ 417 (457)
T KOG0743|consen 415 KNK 417 (457)
T ss_pred hcc
Confidence 443
No 211
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.67 E-value=0.0049 Score=68.97 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
-+++.++|++|+||||||..++++. .-.++=|++|+..+...+-..|...+....-.. ..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 3799999999999999999998864 234788999998888777777776665432110 13
Q ss_pred CCeEEEEEeCCCCC
Q 038611 211 KAKFVLILDDMWEA 224 (837)
Q Consensus 211 ~k~~LlVlDdv~~~ 224 (837)
+++.-+|+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 68899999999865
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.63 E-value=0.026 Score=58.24 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 117 KVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 117 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
+..+++..++..+ .-|.+.|++|+|||++|+.+++.. . ...++++++...+..++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHH
Confidence 3455566666543 455689999999999999998743 1 22456666665554444
No 213
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.62 E-value=0.013 Score=55.65 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=31.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
++.|+|.+|+||||+|+.+...... ....++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 4689999999999999999987622 345688888765543
No 214
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.61 E-value=0.023 Score=68.68 Aligned_cols=60 Identities=17% Similarity=0.326 Sum_probs=40.1
Q ss_pred ccccccchhHHHHHHHHHhcC--------CC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 108 ETLVGEKTKKVVEIIWENLMG--------DK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~--------~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
..++|. +..++.+...+.. ++ ..++.++|+.|+|||+||+.+++.. .+.-...+-++.++
T Consensus 509 ~~v~GQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~ 577 (821)
T CHL00095 509 KRIIGQ--DEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSE 577 (821)
T ss_pred CcCcCh--HHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchh
Confidence 467888 6677777666531 11 3467799999999999999999875 22223344455444
No 215
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.033 Score=61.32 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|+|||.||++++++. . +-|+.++.+ +|+.... ....+.+.++...-.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp--------eivSGvS------GESEkkiRelF~~A~ 279 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP--------EIVSGVS------GESEKKIRELFDQAK 279 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch--------hhhcccC------cccHHHHHHHHHHHh
Confidence 35789999999999999999999986 1 223343332 2222221 223455667777666
Q ss_pred cCCeEEEEEeCCCC
Q 038611 210 AKAKFVLILDDMWE 223 (837)
Q Consensus 210 ~~k~~LlVlDdv~~ 223 (837)
..-++++++|+++.
T Consensus 280 ~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 280 SNAPCIVFIDEIDA 293 (802)
T ss_pred ccCCeEEEeecccc
Confidence 77899999999974
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.58 E-value=0.014 Score=58.79 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
-.++.|+|.+|+|||++|.+++.... .....++|++.. .++..++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 47999999999999999999988762 234678999887 5554443
No 217
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.57 E-value=0.021 Score=57.61 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~ 180 (837)
-.++.|+|.+|+|||+||.+++....... +.-..++|++....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 57999999999999999999987641110 011568999987776665543
No 218
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.57 E-value=0.018 Score=58.58 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC------------CCc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKESLP------------ENE 195 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------~~~ 195 (837)
-.++.|+|.+|+|||+||.+++....... +....++|++....++..++. ++++..+.... ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 47999999999999999999975431111 113579999988776654443 33343332110 001
Q ss_pred cHHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 038611 196 DKVSRAGRLLGMLKAK-AKFVLILDDMWE 223 (837)
Q Consensus 196 ~~~~~~~~l~~~l~~~-k~~LlVlDdv~~ 223 (837)
+....+..+...+.+. +.-+||+|-+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1112223344444444 677888888743
No 219
>PRK12377 putative replication protein; Provisional
Probab=96.53 E-value=0.0043 Score=62.76 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
+...+.|+|.+|+|||.||.++++.... ....++++++. +++..|-..... ... ...+++.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~------~l~~~l~~~~~~----~~~----~~~~l~~l- 161 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVP------DVMSRLHESYDN----GQS----GEKFLQEL- 161 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHH------HHHHHHHHHHhc----cch----HHHHHHHh-
Confidence 3478999999999999999999998732 23346777543 344444433321 111 11234444
Q ss_pred cCCeEEEEEeCCCC
Q 038611 210 AKAKFVLILDDMWE 223 (837)
Q Consensus 210 ~~k~~LlVlDdv~~ 223 (837)
.+.=||||||+..
T Consensus 162 -~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 -CKVDLLVLDEIGI 174 (248)
T ss_pred -cCCCEEEEcCCCC
Confidence 3567899999953
No 220
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.011 Score=66.41 Aligned_cols=60 Identities=33% Similarity=0.429 Sum_probs=42.8
Q ss_pred cccchhHHHHHHHHHhc------CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 111 VGEKTKKVVEIIWENLM------GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 111 vGr~~~~~~~~l~~~l~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
+|- ++.+++|++.|. +-+.+++.+||++|||||+|++.+++...+ .| +-++++.-.|..+
T Consensus 326 YGL--ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R---kf---vR~sLGGvrDEAE 391 (782)
T COG0466 326 YGL--EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR---KF---VRISLGGVRDEAE 391 (782)
T ss_pred cCc--hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC---CE---EEEecCccccHHH
Confidence 454 677888888874 224589999999999999999999998722 22 4455555444433
No 221
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.50 E-value=0.019 Score=69.30 Aligned_cols=45 Identities=22% Similarity=0.419 Sum_probs=32.9
Q ss_pred cccccchhHHHHHHHHHhcC--------CC-CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--------DK-APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--------~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. +..++.+...+.. +. ..++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQ--NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCC--HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57887 4555555555431 12 2578999999999999999999765
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.023 Score=60.42 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=54.4
Q ss_pred CCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCC-hhHhhh--CCcceEEeccCCHHhHHHHHHHHhCCCCCC
Q 038611 211 KAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRS-YRVCRS--MKCKQVEVELLSKEEAFNLFIDRVGSSILQ 285 (837)
Q Consensus 211 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 285 (837)
+++-++|+|+++.. ...+.+...+-.-..++.+|++|.+ ..+... ..+..+.+.+++.++..+.+... +..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~--- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA--- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC---
Confidence 45568889999864 3344443333222445555555544 444322 23445999999999999888764 211
Q ss_pred CchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 286 VPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 286 ~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+ ...++..++|.|..+..+.
T Consensus 207 ~-------~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 D-------ADALLAEAGGAPLAALALA 226 (342)
T ss_pred h-------HHHHHHHcCCCHHHHHHHH
Confidence 1 1235778899998665544
No 223
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.46 E-value=0.019 Score=60.41 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC---------CccHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE---------NEDKV 198 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 198 (837)
-+++-|+|.+|+|||+|+.+++-..... ...-..++||+....++..++. ++++.++.+... ..+..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4788999999999999999877543111 1123478999998888888875 456666543211 00111
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCCC
Q 038611 199 ---SRAGRLLGMLKAKAKFVLILDDMW 222 (837)
Q Consensus 199 ---~~~~~l~~~l~~~k~~LlVlDdv~ 222 (837)
..+..+...+...+--|||+|.+-
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 122333333334455678888874
No 224
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.46 E-value=0.026 Score=63.15 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=81.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|.|||.+|+.+++.. ...| +-+..+. +. ... .......+.++.+...
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------l~--------~~~--vGese~~l~~~f~~A~ 315 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------LF--------GGI--VGESESRMRQMIRIAE 315 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH------hc--------ccc--cChHHHHHHHHHHHHH
Confidence 35789999999999999999999875 1121 2222211 10 000 0112233444444444
Q ss_pred cCCeEEEEEeCCCCCcc----c----------cccccCCCCCCCCcEEEEEeCChhH-----hhhCCcce-EEeccCCHH
Q 038611 210 AKAKFVLILDDMWEAFP----L----------EKVGIPEPNKENGCKLVITTRSYRV-----CRSMKCKQ-VEVELLSKE 269 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----~----------~~l~~~~~~~~~~s~iivTtR~~~v-----~~~~~~~~-~~l~~L~~~ 269 (837)
...+.+|++|+++.... . ..+...+.....+..||.||...+. .+...... +.++.-+.+
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 55799999999974211 0 0011111112233345567765432 12122333 778888888
Q ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 270 EAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 270 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
+-.++|+........... -......+++.+.|.-=|
T Consensus 396 eR~~Il~~~l~~~~~~~~--~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred HHHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCCCHH
Confidence 888888877654311100 011245667777665533
No 225
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.041 Score=56.88 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhc----C---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 116 KKVVEIIWENLM----G---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 116 ~~~~~~l~~~l~----~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
++.+++|.+.+. + +.++-|.+||++|.|||-||++|+++. ... |+.|... +
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS--------E 220 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS--------E 220 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH--------H
Confidence 556666666553 1 346899999999999999999999975 222 3333221 1
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc----------c------ccccccCCCC--CCCCcEEE
Q 038611 183 IATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF----------P------LEKVGIPEPN--KENGCKLV 244 (837)
Q Consensus 183 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~------~~~l~~~~~~--~~~~s~ii 244 (837)
+.+..-+ +-......+.+--....+.+|.+|.++... + .-++...+.+ .....|||
T Consensus 221 lVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 221 LVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred HHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 2222111 112223344444445679999999986321 0 1122222222 23456899
Q ss_pred EEeCChhHhh-----hCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh----HHHHHHHh
Q 038611 245 ITTRSYRVCR-----SMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL----AIVTVAAS 314 (837)
Q Consensus 245 vTtR~~~v~~-----~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL----ai~~~~~~ 314 (837)
..|-..++.. -...+. ++++.-+.+.-.+.|+-+...-...+.-+ ...+++.|.|.-= |+.+=|++
T Consensus 295 ~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm 370 (406)
T COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGM 370 (406)
T ss_pred EecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhH
Confidence 8887766532 112222 77774444545555655543321111111 3456677777653 45555666
Q ss_pred c
Q 038611 315 M 315 (837)
Q Consensus 315 l 315 (837)
+
T Consensus 371 ~ 371 (406)
T COG1222 371 F 371 (406)
T ss_pred H
Confidence 5
No 226
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0091 Score=64.37 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=60.5
Q ss_pred cccccch-hHHHHHHHHHhcCC--------C-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 109 TLVGEKT-KKVVEIIWENLMGD--------K-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 109 ~~vGr~~-~~~~~~l~~~l~~~--------~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
++-|-|. ..++++|+++|.+. + ++-|.++|++|.|||-||++|+-.. .+ . +|...+..|+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~V--P----FF~~sGSEFdE-- 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GV--P----FFYASGSEFDE-- 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CC--C----eEeccccchhh--
Confidence 4556643 45688899999763 2 5889999999999999999999764 11 1 22233333331
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 038611 179 LQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 223 (837)
+.-. --..++..+.+.-...-+++|.+|.++.
T Consensus 376 ----m~VG---------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ----MFVG---------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ----hhhc---------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 1110 1133455566665566799999999874
No 227
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.41 E-value=0.032 Score=67.00 Aligned_cols=45 Identities=40% Similarity=0.451 Sum_probs=34.3
Q ss_pred cccccchhHHHHHHHHHhc------CCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLM------GDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~------~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|. ++.++.|.+++. ....+++.++|++|+|||++|+.+++..
T Consensus 321 ~~~G~--~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGL--KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCCh--HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46776 556677766543 1234689999999999999999999886
No 228
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.028 Score=64.54 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=103.6
Q ss_pred cccccch-hHHHHHHHHHhcCC---------CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 109 TLVGEKT-KKVVEIIWENLMGD---------KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 109 ~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
++.|-+. ..++.+++.+|.+. -++-+.++|++|.|||-||++++-.. . +-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 5666533 34566777777763 26889999999999999999999764 1 234444432
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-----------------ccccccCCCCCCCCc
Q 038611 179 LQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-----------------LEKVGIPEPNKENGC 241 (837)
Q Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~~s 241 (837)
+..+.+... ...++..+...-....+.+|.+|+++...- ++++.....+...+.
T Consensus 379 ---EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 222222211 133445555555567789999999864311 222222222222222
Q ss_pred --EEEEEeCChhHhhh--C---Ccce-EEeccCCHHhHHHHHHHHhCCCCC-CCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 242 --KLVITTRSYRVCRS--M---KCKQ-VEVELLSKEEAFNLFIDRVGSSIL-QVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 242 --~iivTtR~~~v~~~--~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
.++-+|...++... + ..+. +.+..-+.....+.|..++..... .+ ..++++ |+...-|.+=|...
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e---~~dl~~-~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDE---DVDLSK-LASLTPGFSGADLA 523 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcc---hhhHHH-HHhcCCCCcHHHHH
Confidence 33346666555221 1 1222 777777788888889888765522 23 556666 88888888866443
No 229
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.39 E-value=0.0035 Score=59.55 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=46.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC-
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAK- 211 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 211 (837)
++.|.|.+|.|||++|.++... ....++++.-.+.++. ++.+.|.+.-... +......+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 3679999999999999998754 2245778876666654 3455544432222 22222222222333333221
Q ss_pred CeEEEEEeCC
Q 038611 212 AKFVLILDDM 221 (837)
Q Consensus 212 k~~LlVlDdv 221 (837)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 3347999987
No 230
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.019 Score=64.26 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
..-|.|.|+.|+|||+||+++++... ++..-++.+|+++.- ..++.+++.+-..+. +.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfs-----------------e~- 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS-----------------EA- 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHHHH-----------------HH-
Confidence 46789999999999999999999873 566667788877652 234444444332221 11
Q ss_pred hcCCeEEEEEeCCCCC--------cccccc----ccCC----C-CCCCCcE--EEEEeCChhHhh----hCCc-ce-EEe
Q 038611 209 KAKAKFVLILDDMWEA--------FPLEKV----GIPE----P-NKENGCK--LVITTRSYRVCR----SMKC-KQ-VEV 263 (837)
Q Consensus 209 ~~~k~~LlVlDdv~~~--------~~~~~l----~~~~----~-~~~~~s~--iivTtR~~~v~~----~~~~-~~-~~l 263 (837)
..-.+-+|||||++-- .+|... ...+ . ....+.+ +|.|.....-.. .... .. +.|
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 1346899999998621 122110 0000 0 1123344 344444322211 1111 11 678
Q ss_pred ccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCC-chhHHHHH
Q 038611 264 ELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGC-LPLAIVTV 311 (837)
Q Consensus 264 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~ 311 (837)
..+...+-.++++.......... ..+...-+..+|+| .|.-+.++
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHH
Confidence 88888877777666554332111 33334448888887 34444433
No 231
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.34 E-value=0.0066 Score=72.94 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=34.5
Q ss_pred cccccchhHHHHHHHHHhcC--------C-CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--------D-KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--------~-~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. +..++.+.+.+.. . ...++.++|+.|+|||.+|+.++...
T Consensus 567 ~v~GQ--~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 567 RVIGQ--DHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred eEcCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 67888 5667777666521 1 23578999999999999999998876
No 232
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.33 E-value=0.014 Score=61.19 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESL-----PENEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 204 (837)
.-+++-|+|++|+||||||.++...... ....++||+....++.. .+++++.+. .......+.+..+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3479999999999999999998877522 24567899876655543 344454321 1111222233333
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 038611 205 LGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv~~ 223 (837)
......+..-+||+|-|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 3333345677899999853
No 233
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.32 E-value=0.031 Score=63.74 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=36.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. +..++.+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 66 ~iiGq--s~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQ--EEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCc--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 78998 5567777776666556677899999999999999998754
No 234
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.099 Score=58.47 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|..+|++|+|||++|+++++.. ...| +.++.+ ++....- .+....+.++.+.-.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp--------EL~sk~v------GeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP--------ELFSKYV------GESERAIREVFRKAR 524 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH--------HHHHHhc------CchHHHHHHHHHHHh
Confidence 46899999999999999999999975 2233 232221 1111110 112233444444444
Q ss_pred cCCeEEEEEeCCCCCcc-------------ccccccCCCCCCCCcEEEE---EeCChhHh-hhCC---cce-EEeccCCH
Q 038611 210 AKAKFVLILDDMWEAFP-------------LEKVGIPEPNKENGCKLVI---TTRSYRVC-RSMK---CKQ-VEVELLSK 268 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~s~iiv---TtR~~~v~-~~~~---~~~-~~l~~L~~ 268 (837)
+--+.+|.||.++.... +..+..-..+......|+| |-|...+- ..+. .+. +.++.-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 45678888888763210 1122222222222223332 33333331 1222 233 66666677
Q ss_pred HhHHHHHHHHhCCC
Q 038611 269 EEAFNLFIDRVGSS 282 (837)
Q Consensus 269 ~~~~~Lf~~~~~~~ 282 (837)
+.-.++|+..+..-
T Consensus 605 ~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 605 EARLEILKQCAKKM 618 (693)
T ss_pred HHHHHHHHHHHhcC
Confidence 77788888877544
No 235
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.30 E-value=0.01 Score=57.29 Aligned_cols=36 Identities=39% Similarity=0.574 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEE
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 168 (837)
...+|.|.|+.|+||||+|+.+++... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~---~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK---LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEE
Confidence 457999999999999999999998872 234445555
No 236
>PRK04296 thymidine kinase; Provisional
Probab=96.30 E-value=0.0041 Score=60.67 Aligned_cols=111 Identities=8% Similarity=-0.015 Sum_probs=59.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHHh
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE--NEDKVSRAGRLLGMLK 209 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 209 (837)
.++.|+|..|.||||+|..++..... ....++.+. ..++.......++++++..... ..........+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 47789999999999999999887622 233344442 1112122233455555543221 1111222222222 2
Q ss_pred cCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCChh
Q 038611 210 AKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRSYR 251 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~~~ 251 (837)
.++.-+||+|.+.-- ++..++...+ ...|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 345568999999542 2122222221 246778999998844
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.028 Score=56.83 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCc
Q 038611 118 VVEIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENE 195 (837)
Q Consensus 118 ~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 195 (837)
.+..+.++..+ .....+.++|.+|+|||+||.++++.... ....++++++ .++...+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it~------~~l~~~l~~~~~~---~~~ 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIITV------ADIMSAMKDTFSN---SET 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEH------HHHHHHHHHHHhh---ccc
Confidence 44444444433 22457899999999999999999998732 2345666643 4444444433321 011
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 038611 196 DKVSRAGRLLGMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 196 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 224 (837)
. ...+++.+ . +.=+|||||+...
T Consensus 152 ~----~~~~l~~l-~-~~dlLvIDDig~~ 174 (244)
T PRK07952 152 S----EEQLLNDL-S-NVDLLVIDEIGVQ 174 (244)
T ss_pred c----HHHHHHHh-c-cCCEEEEeCCCCC
Confidence 1 12334444 2 3558889999654
No 238
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.27 E-value=0.011 Score=71.54 Aligned_cols=59 Identities=22% Similarity=0.396 Sum_probs=40.3
Q ss_pred cccccchhHHHHHHHHHhcC------C--C-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLMG------D--K-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~------~--~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|. +..++.+...+.. + . ..++.++|+.|+|||++|+.+.... .......+.++.+.
T Consensus 566 ~v~GQ--~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 566 RVVGQ--DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred ccCCC--hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 67887 5566666666542 1 1 3578899999999999999999875 22223445555554
No 239
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.27 E-value=0.034 Score=56.73 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCccHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKES-------LPENEDKV--- 198 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~--- 198 (837)
+-.-++|.|.+|+||||||+++++.... .+-+.++++-+++... ..++..++...-... ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999999998632 2234567777877654 555655554431111 11111111
Q ss_pred --HHHHHHHHHHh-c-CCeEEEEEeCCCCC
Q 038611 199 --SRAGRLLGMLK-A-KAKFVLILDDMWEA 224 (837)
Q Consensus 199 --~~~~~l~~~l~-~-~k~~LlVlDdv~~~ 224 (837)
.....+.+.+. + ++..|+++||+-..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11122334442 3 89999999998543
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.25 E-value=0.035 Score=66.43 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
.+-|.++|++|+|||+||+.+++.. ... .+.++.+. + ... . .......+..+.+....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~---~~~---~i~i~~~~------i----~~~----~--~g~~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA---GAY---FISINGPE------I----MSK----Y--YGESEERLREIFKEAEE 269 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCe---EEEEecHH------H----hcc----c--ccHHHHHHHHHHHHHHh
Confidence 4678999999999999999999875 112 22332211 1 100 0 01122334444444445
Q ss_pred CCeEEEEEeCCCCCcc-------------ccccccCCCC-CCCCcEEEE-EeCChh-Hhhh---C-Ccce-EEeccCCHH
Q 038611 211 KAKFVLILDDMWEAFP-------------LEKVGIPEPN-KENGCKLVI-TTRSYR-VCRS---M-KCKQ-VEVELLSKE 269 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~-------------~~~l~~~~~~-~~~~s~iiv-TtR~~~-v~~~---~-~~~~-~~l~~L~~~ 269 (837)
..+.+|+||+++.... ...+...+.. ...+..+|+ ||.... +... . .... +.+...+.+
T Consensus 270 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~ 349 (733)
T TIGR01243 270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKR 349 (733)
T ss_pred cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHH
Confidence 6678999999864210 1111111111 122334444 444432 2111 1 1222 778888888
Q ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 270 EAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 270 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
+-.+++........... ......+++.+.|.--+
T Consensus 350 ~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 350 ARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCHH
Confidence 88888875543321111 12356778888886544
No 241
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.0075 Score=58.05 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=66.8
Q ss_pred HHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCe--EEEEEeCCCcCHHHH-----HHHHHHHhcCCCCCC
Q 038611 122 IWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV--VIWVTVSQPLDLIKL-----QTEIATALKESLPEN 194 (837)
Q Consensus 122 l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~--~~wv~vs~~~~~~~~-----~~~i~~~l~~~~~~~ 194 (837)
++..+-+....-..|.|++|+|||||.+.+++-.+.....|-. +.-|.-+. .+..- +..+......
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers--EIag~~~gvpq~~~g~R~dV----- 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS--EIAGCLNGVPQHGRGRRMDV----- 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc--hhhccccCCchhhhhhhhhh-----
Confidence 4455555555557899999999999999999887554445543 22222111 11100 1111111111
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChh
Q 038611 195 EDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYR 251 (837)
Q Consensus 195 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 251 (837)
.+.....+-+......-.+=+||.|.+-..++-..+...+ ..|.++|.|..--.
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 1111122223333334468899999998877665555444 66888888876533
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.026 Score=57.64 Aligned_cols=81 Identities=27% Similarity=0.347 Sum_probs=50.7
Q ss_pred HHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHH
Q 038611 122 IWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRA 201 (837)
Q Consensus 122 l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 201 (837)
+.+++. ...-+.++|.+|+|||.||.++.+... . ..-.+.++++ .++..++...... ... .
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~------~el~~~Lk~~~~~-----~~~---~ 158 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITA------PDLLSKLKAAFDE-----GRL---E 158 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEH------HHHHHHHHHHHhc-----Cch---H
Confidence 334444 668899999999999999999999984 2 2334666643 4455555554432 111 1
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 038611 202 GRLLGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 202 ~~l~~~l~~~k~~LlVlDdv~~ 223 (837)
.++.+.+ .+-=||||||+-.
T Consensus 159 ~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 159 EKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred HHHHHHh--hcCCEEEEecccC
Confidence 2233323 2345889999964
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.19 E-value=0.18 Score=55.09 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
.+.+|.++|..|+||||+|..++..+. .. . ..++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~-~~-G-~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ-RK-G-FKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HC-C-CCEEEEcC
Confidence 367999999999999999999998763 22 2 24555554
No 244
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.19 E-value=0.0084 Score=63.27 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=42.2
Q ss_pred cccccchhHHHHHHHHHhcC------CCCCEEEEEcCCCChHHHHHHHHHHHHHhh----cCCCCeEEE
Q 038611 109 TLVGEKTKKVVEIIWENLMG------DKAPKIGVWGMGGIGKTTIMKEINNRLQKE----TNKFNVVIW 167 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~~f~~~~w 167 (837)
.++|. ++.++++++++.. ..-+++.++|++|.||||||+.+.+..... .+.|-..-|
T Consensus 52 ~~~G~--~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGM--EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCc--HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 68887 6677777777742 245899999999999999999999987331 224445555
No 245
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.18 E-value=0.034 Score=55.79 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 357999999999999999999987752 2245678887655443
No 246
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0013 Score=65.47 Aligned_cols=157 Identities=19% Similarity=0.198 Sum_probs=79.4
Q ss_pred CCCcccEEEccCCcCccccCh--hHhhcCCCCcEEEecCCCCcccChhh-hcccccceecccCccccC--CCc-cccccC
Q 038611 488 HCEILSTLLLQRNINLQWIPE--CFFAHMHGLKILNLSFTAIEVLPNSV-SDLMNLISLLLQRCRRLK--RVP-SVAKLL 561 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~l~--~lp-~~~~l~ 561 (837)
.++.++.+++.+| .+..+.+ .++.++++|++|+|+.|.+..--.+. -.+.+|+.|-|.+. .+. ... .+..++
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcch
Confidence 4556666666666 3433322 33466677777777766643222222 24556666666652 221 111 244455
Q ss_pred CCCEEeccCCcCccc----------ccc--------------------ccCCCCCCEEeccCCCCCCCCCC-cccCCccC
Q 038611 562 ALQHLDLRGTSIEEV----------PEG--------------------MQMLENLSHLYLYSPPLKELPAG-LLPRLRKL 610 (837)
Q Consensus 562 ~L~~L~l~~~~i~~l----------p~~--------------------~~~l~~L~~L~l~~~~l~~~p~~-~l~~l~~L 610 (837)
.++.|+++.|++..+ ... ..-++++..+.+..|+++..... ....++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 555555554422111 000 11245555555555655543221 13344555
Q ss_pred cEEEccccchhhhhhHHHHhhhhhccCeeEEeecccc
Q 038611 611 CRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 611 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
--|++...+-.+...+.++.++ ++|..|++..+.+.
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLS 262 (418)
T ss_pred hhhhhcccccccHHHHHHHcCC-chhheeeccCCccc
Confidence 5666644444455667788888 88888877765543
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.16 E-value=0.019 Score=60.28 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESL-----PENEDKVSRAGRLL 205 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 205 (837)
-+++-|+|++|+||||||.+++....+ ....++||+....++.. .+++++.+. .......+.+..+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 479999999999999999998876532 34568899887766643 334444321 11112222232222
Q ss_pred HHHhcCCeEEEEEeCCC
Q 038611 206 GMLKAKAKFVLILDDMW 222 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~ 222 (837)
.....+..-+||+|-|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 22334567789999975
No 248
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.013 Score=67.65 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=91.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCeEEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
.++|| ++++..+++.|....-.--.++|.+|||||++|.-++..+.. .+- -+..++. .++
T Consensus 171 PvIGR--d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~-g~VP~~L~~~~i~s-----LD~-------- 234 (786)
T COG0542 171 PVIGR--DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN-GDVPESLKDKRIYS-----LDL-------- 234 (786)
T ss_pred CCcCh--HHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc-CCCCHHHcCCEEEE-----ecH--------
Confidence 68999 778999999997654333456899999999999999887621 110 0111111 011
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--------ccc--ccccCCCCCCCCcEEEEEeCChhH--
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--------PLE--KVGIPEPNKENGCKLVITTRSYRV-- 252 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~~--~l~~~~~~~~~~s~iivTtR~~~v-- 252 (837)
..+.....-..+..+++..+++.+.+..+.++++|.++... ..+ .+..|-...+.--.|-.||-++--
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 11111122245667788888888876679999999997531 121 122221111222235556655321
Q ss_pred -----hhhCCcceEEeccCCHHhHHHHHHHH
Q 038611 253 -----CRSMKCKQVEVELLSKEEAFNLFIDR 278 (837)
Q Consensus 253 -----~~~~~~~~~~l~~L~~~~~~~Lf~~~ 278 (837)
|-....+++.+..-+.+++...++..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 22233344888888999988887754
No 249
>PRK09354 recA recombinase A; Provisional
Probab=96.13 E-value=0.021 Score=60.34 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESL-----PENEDKVSRAGRLL 205 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 205 (837)
-+++-|+|++|+||||||.+++....+ ....++||+....++.. .+++++.+. .......+.+..+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 479999999999999999998876532 34668999887776653 344554431 11112222333333
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 038611 206 GMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~~ 223 (837)
..+..+..-+||+|-|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333345677899999853
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.012 Score=62.43 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=28.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
.-+.++|..|+|||.||.++++.... . ...++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~-~--g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD-R--GKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH-C--CCeEEEEEH
Confidence 77999999999999999999998732 2 235677764
No 251
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.11 E-value=0.032 Score=58.59 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+-+.|+|..|+|||.||.++++.... ....+.++++. .++.++....... . ....++.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~------~l~~~lk~~~~~~-----~----~~~~l~~l- 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFP------EFIRELKNSISDG-----S----VKEKIDAV- 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHH------HHHHHHHHHHhcC-----c----HHHHHHHh-
Confidence 4578999999999999999999999732 22345666543 4555555444311 1 12233343
Q ss_pred cCCeEEEEEeCCCCC--ccccc--cccCC-CCC-CCCcEEEEEeCC
Q 038611 210 AKAKFVLILDDMWEA--FPLEK--VGIPE-PNK-ENGCKLVITTRS 249 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~--~~~~~--l~~~~-~~~-~~~s~iivTtR~ 249 (837)
.+-=||||||+... ..|.. +...+ ... ..+-.+|+||-.
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 24668899999643 34532 32222 111 234457777764
No 252
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.11 E-value=0.19 Score=56.75 Aligned_cols=198 Identities=15% Similarity=0.081 Sum_probs=113.1
Q ss_pred cccccchhHHHHHHHHHhc----C-CCCCEEEEEcCCCChHHHHHHHHHHHHHhhc-----CCCCeEEEEEeCCCcCHHH
Q 038611 109 TLVGEKTKKVVEIIWENLM----G-DKAPKIGVWGMGGIGKTTIMKEINNRLQKET-----NKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~----~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-----~~f~~~~wv~vs~~~~~~~ 178 (837)
.+-+| +.+..+|-.++. . +..+.+.|.|.+|.|||..+..|.+.+.... ..|++ +.|+.-.-....+
T Consensus 397 sLpcR--e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 397 SLPCR--ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccch--hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 45667 555566655543 3 3446999999999999999999999764221 23432 3344334446889
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCC-----ccccccccCCCCCCCCcEEEEEeC-
Q 038611 179 LQTEIATALKESLPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEA-----FPLEKVGIPEPNKENGCKLVITTR- 248 (837)
Q Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~s~iivTtR- 248 (837)
+...|..++..... .....+..+...+. ..+..++++|+++.- +.+..+. .+ ...++||++|-+=
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f-dW-pt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF-DW-PTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHh-cC-CcCCCCceEEEEec
Confidence 99999999876432 22233444444443 235688999987532 1222221 11 2355676655332
Q ss_pred C----------hhHhhhCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHh
Q 038611 249 S----------YRVCRSMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAAS 314 (837)
Q Consensus 249 ~----------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 314 (837)
+ ..++..++...+...|-+.++-.+.......+...-.....+=+++.|+.-.|-.-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1 11344445545777888888877777666544322122224445555555555555555554433
No 253
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.11 E-value=0.048 Score=53.61 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=94.1
Q ss_pred cccccchh-HHHHHHHHHhcCC------CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 109 TLVGEKTK-KVVEIIWENLMGD------KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 109 ~~vGr~~~-~~~~~l~~~l~~~------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
+++|.+.. ..-.-|++.|.+. .++-|..+|++|.|||.+|+++++.. +-.| +.|.. .+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka-------t~ 186 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA-------TE 186 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech-------HH
Confidence 67887431 2234466777653 47899999999999999999999975 2222 22211 11
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc----------c----ccccccCCC--CCCCCcEEEE
Q 038611 182 EIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF----------P----LEKVGIPEP--NKENGCKLVI 245 (837)
Q Consensus 182 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~----------~----~~~l~~~~~--~~~~~s~iiv 245 (837)
-|.+.. .+...++.++.+.-.+.-++++.||.++... + .+.+..-+. ..+.|..-|-
T Consensus 187 liGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 222222 2334455666666656679999999986320 1 112221121 1244544555
Q ss_pred EeCChhHhhh---CCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 246 TTRSYRVCRS---MKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 246 TtR~~~v~~~---~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
.|.+.+.... ..... |+..--+.+|-..++...+..-.-+ ...-.+.++++.+|..
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp----v~~~~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP----VDADLRYLAAKTKGMS 319 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc----cccCHHHHHHHhCCCC
Confidence 5555444221 11122 6666667788888877766432111 1222456666666643
No 254
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.10 E-value=0.062 Score=57.69 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=31.1
Q ss_pred HHHHHHHHhcC---CCCCEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 118 VVEIIWENLMG---DKAPKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 118 ~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
..+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+...
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555554 4678999999999999999999999874
No 255
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.08 E-value=0.058 Score=64.58 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=81.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
.+-|.++|++|+|||++|+++++.. ...| +.+..+ +++.. . .......+..+......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~----------~l~~~----~--vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGP----------EILSK----W--VGESEKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH----------HHhhc----c--cCcHHHHHHHHHHHHHh
Confidence 4678999999999999999999875 2222 222211 11111 0 11122334455555445
Q ss_pred CCeEEEEEeCCCCCc---------c-----ccccccCCCC--CCCCcEEEEEeCChhHhhh-----CCcce-EEeccCCH
Q 038611 211 KAKFVLILDDMWEAF---------P-----LEKVGIPEPN--KENGCKLVITTRSYRVCRS-----MKCKQ-VEVELLSK 268 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~---------~-----~~~l~~~~~~--~~~~s~iivTtR~~~v~~~-----~~~~~-~~l~~L~~ 268 (837)
..+.+|+||+++.-. . ...+...+.+ ...+..||.||...+.... ..... +.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 678999999986321 0 1111111111 1234456667766543211 12333 78888898
Q ss_pred HhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 269 EEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 269 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
++-.++|+.......... ......+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~----~~~l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAE----DVDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCc----cCCHHHHHHHcCCCC
Confidence 988888876654331111 011456777787755
No 256
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.08 E-value=0.057 Score=54.85 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
..+++.|.|.+|+|||++|.++..... .....++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 458999999999999999999766531 2356789998765 33444443
No 257
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.08 E-value=0.0046 Score=57.26 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 169 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 169 (837)
..||.|.|.+|.||||||+++.+.+. .....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 35899999999999999999999883 2334456654
No 258
>PRK06696 uridine kinase; Validated
Probab=96.07 E-value=0.0092 Score=60.01 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhc---CCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 116 KKVVEIIWENLM---GDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 116 ~~~~~~l~~~l~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.+++|.+.+. .+...+|+|.|.+|+||||||+++....
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344556665553 4567899999999999999999999887
No 259
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.07 E-value=0.015 Score=55.98 Aligned_cols=75 Identities=31% Similarity=0.370 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
+..-+.|+|..|+|||.||..+.+.... .-..+.|+++ .+++..+ ...... .. ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~------~~L~~~l----~~~~~~-~~----~~~~~~~l~ 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITA------SDLLDEL----KQSRSD-GS----YEELLKRLK 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEH------HHHHHHH----HCCHCC-TT----HCHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeec------Cceeccc----cccccc-cc----hhhhcCccc
Confidence 3467999999999999999999998733 2334677753 3344443 322111 11 122344442
Q ss_pred cCCeEEEEEeCCCCC
Q 038611 210 AKAKFVLILDDMWEA 224 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~ 224 (837)
+-=||||||+-..
T Consensus 108 --~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 --RVDLLILDDLGYE 120 (178)
T ss_dssp --TSSCEEEETCTSS
T ss_pred --cccEeccccccee
Confidence 3457789999653
No 260
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.05 E-value=0.067 Score=54.79 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC------------CCCc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALKESL------------PENE 195 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~~ 195 (837)
-.+.=|+|.+|+|||.|+.+++-..... .+.-..++|++....++..++. +|++..+.+. ....
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4789999999999999999887543111 1234569999998889887775 4666543221 0011
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 038611 196 DKVSRAGRLLGMLKAKAKFVLILDDMW 222 (837)
Q Consensus 196 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 222 (837)
.....+..+...+...+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 112222233333334556688888873
No 261
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0086 Score=54.48 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=22.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 458999999999999999999987
No 262
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.04 E-value=0.042 Score=53.57 Aligned_cols=49 Identities=27% Similarity=0.406 Sum_probs=35.1
Q ss_pred Cccccccch--hHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 107 TETLVGEKT--KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 107 ~~~~vGr~~--~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-..++|.+. +..++.-..++.+-...-|.+||.-|.||++|++++.+.+
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 347888744 2222333344455566788999999999999999999987
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.00 E-value=0.037 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
No 264
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.042 Score=57.24 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
..++++|+|++|+||||++..++..... ...-..+..|+..... .....+....+.++.+.....+. ..+...++.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~-~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDP-KELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCH-HHHHHHHHHc
Confidence 3579999999999999999999987632 2112346666654321 22333444455555443222222 2233444444
Q ss_pred hcCCeEEEEEeCC
Q 038611 209 KAKAKFVLILDDM 221 (837)
Q Consensus 209 ~~~k~~LlVlDdv 221 (837)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 22 346777753
No 265
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.035 Score=59.62 Aligned_cols=133 Identities=15% Similarity=0.211 Sum_probs=71.7
Q ss_pred hHHHHHHHHHhc-CCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcC------------------CCCeEEEEEeCCCcC
Q 038611 116 KKVVEIIWENLM-GDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWVTVSQPLD 175 (837)
Q Consensus 116 ~~~~~~l~~~l~-~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~vs~~~~ 175 (837)
+.....+..+.. .++. +.+.++|+.|+||||+|..+++.+.-... ...-+..+..++...
T Consensus 7 ~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~ 86 (325)
T COG0470 7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRK 86 (325)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCC
Confidence 455666666665 3444 45999999999999999999988721110 112344454444433
Q ss_pred ---HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCC-
Q 038611 176 ---LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRS- 249 (837)
Q Consensus 176 ---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~- 249 (837)
..+..+++.+....... .++.-++++|+++... .-..+...+......+.+|++|..
T Consensus 87 ~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 87 IDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred CcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 23333333333322110 3567889999998642 222222222222445667776664
Q ss_pred hhHhhh--CCcceEEecc
Q 038611 250 YRVCRS--MKCKQVEVEL 265 (837)
Q Consensus 250 ~~v~~~--~~~~~~~l~~ 265 (837)
..+..- ..|..+++.+
T Consensus 150 ~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 150 SKILPTIRSRCQRIRFKP 167 (325)
T ss_pred hhccchhhhcceeeecCC
Confidence 333221 1233366666
No 266
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.99 E-value=0.018 Score=60.38 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+..++|||++|+|||.+|+++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999986
No 267
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.96 E-value=0.095 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+.+.++|+.|+||||+|+.++...
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998875
No 268
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.039 Score=58.76 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKESLPENEDKVSRAGRLLGM 207 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 207 (837)
+.++|+|+|++|+||||++..++.... . .-..+..++.. ++. ..+-++..++.++.+.....+.. .+.+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~--~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~-~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-G--KKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEA-AMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-H--cCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHH-HHHHHHHH
Confidence 358999999999999999999998762 1 22345555543 333 22233444455554432122222 22233333
Q ss_pred HhcC-CeEEEEEeCCCC
Q 038611 208 LKAK-AKFVLILDDMWE 223 (837)
Q Consensus 208 l~~~-k~~LlVlDdv~~ 223 (837)
+... +.=+|++|-.-.
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 3221 234667787643
No 269
>PRK06547 hypothetical protein; Provisional
Probab=95.96 E-value=0.01 Score=56.60 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 121 IIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 121 ~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+...+......+|+|.|.+|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556778899999999999999999998764
No 270
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.023 Score=63.74 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=43.6
Q ss_pred ccccchhHHHHHHHHHhcC------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 110 LVGEKTKKVVEIIWENLMG------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
=+|. ++.+++|++++.- -+.+++.++|++|||||++|+.|+....+. | +-++|+.-.|..+|
T Consensus 413 HYgm--~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk---F---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 413 HYGM--EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK---F---FRFSVGGMTDVAEI 480 (906)
T ss_pred ccch--HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc---e---EEEeccccccHHhh
Confidence 3555 5677888887742 256899999999999999999999987332 2 34455555454443
No 271
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.95 E-value=0.034 Score=59.56 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..++.++|+.|+||||++.++...... ......+..++... .....+-++...+.++.+.....+... ....+..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-l~~~l~~l- 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAEL- 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-HHHHHHHh-
Confidence 479999999999999999999987622 21223566665332 223455566667777665422222111 22233333
Q ss_pred cCCeEEEEEeCCCC
Q 038611 210 AKAKFVLILDDMWE 223 (837)
Q Consensus 210 ~~k~~LlVlDdv~~ 223 (837)
.+ +=+|++|..-.
T Consensus 214 ~~-~DlVLIDTaG~ 226 (374)
T PRK14722 214 RN-KHMVLIDTIGM 226 (374)
T ss_pred cC-CCEEEEcCCCC
Confidence 33 45566898853
No 272
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.93 E-value=0.038 Score=56.26 Aligned_cols=142 Identities=13% Similarity=0.187 Sum_probs=73.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCC---------CeEEEEEeCCCc-CHHHHHHHHHHHhcCCC-----------
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKF---------NVVIWVTVSQPL-DLIKLQTEIATALKESL----------- 191 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---------~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~----------- 191 (837)
+-.|+|++|+|||+||..++-....-...+ ..+++++..++. .+.+-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567899999999999999987653211111 235556554433 23334444444432110
Q ss_pred -C----CC---ccHHHHHHHHHHHHhcCCeEEEEEeCCCC--------CccccccccCCC--CCCCCcEEEEEeCChhHh
Q 038611 192 -P----EN---EDKVSRAGRLLGMLKAKAKFVLILDDMWE--------AFPLEKVGIPEP--NKENGCKLVITTRSYRVC 253 (837)
Q Consensus 192 -~----~~---~~~~~~~~~l~~~l~~~k~~LlVlDdv~~--------~~~~~~l~~~~~--~~~~~s~iivTtR~~~v~ 253 (837)
. .. ......+..+.+.+...+.-+||+|-+-. ......+...+. ....|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00 11223445555555445678999996532 111111211111 113467788877754221
Q ss_pred h--------h-------CCcce-EEeccCCHHhHHHH
Q 038611 254 R--------S-------MKCKQ-VEVELLSKEEAFNL 274 (837)
Q Consensus 254 ~--------~-------~~~~~-~~l~~L~~~~~~~L 274 (837)
. . -.+.. +.+.+++.+++.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 0 01122 67788888877763
No 273
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.91 E-value=0.012 Score=60.33 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=64.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE---eCCCcCHHHHHHHHHHHhcCCC-C------CCccH
Q 038611 128 GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT---VSQPLDLIKLQTEIATALKESL-P------ENEDK 197 (837)
Q Consensus 128 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~~~i~~~l~~~~-~------~~~~~ 197 (837)
.++..-++|+|..|.|||||++.++.... .....+++. +...... .+++.....-. . +..+.
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhccccccccccccccccc
Confidence 44567899999999999999999997752 222334432 2111111 23332221110 0 00111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHh
Q 038611 198 VSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVC 253 (837)
Q Consensus 198 ~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 253 (837)
......+...+....+=+|++|.+...+.+..+...+ ..|..||+||.+..+.
T Consensus 180 ~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 180 CPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred chHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 1122234444444578899999997765555444333 3477899999986653
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.91 E-value=0.023 Score=53.32 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCeEEEEEeCCC----CCccccccccCCCCCCCCcEEEEEeCChhHhhhCCcce
Q 038611 202 GRLLGMLKAKAKFVLILDDMW----EAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSMKCKQ 260 (837)
Q Consensus 202 ~~l~~~l~~~k~~LlVlDdv~----~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~ 260 (837)
..+.+.+ -+++-+++-|.-- ....|+-+.....-...|..|+++|.+.++...+....
T Consensus 146 vaIARAi-V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 146 VAIARAI-VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHHH-ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 3455555 5788999988653 33344432211111256889999999999877776554
No 275
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.90 E-value=0.05 Score=57.55 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhh--c-CCCCeEEEEEeCCCcCHHHHHHHHHHHhcC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKE--T-NKFNVVIWVTVSQPLDLIKLQTEIATALKE 189 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 189 (837)
...++.|+|.+|+|||||+..++...... . ..-..++|++....++..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 35899999999999999999987643111 1 11246799998887777763 445555543
No 276
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.90 E-value=0.2 Score=50.06 Aligned_cols=209 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHh---hcCCCCeEEEEEeC----------CCc--
Q 038611 110 LVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVS----------QPL-- 174 (837)
Q Consensus 110 ~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs----------~~~-- 174 (837)
+.++ ++....+......++.+-+.++|++|.||-|.+..+.+..=. .+-.-+..-|.+-| .++
T Consensus 15 l~~~--~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYH--EELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccH--HHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 4444 555566666666667889999999999999988887776511 01112334444322 211
Q ss_pred ---------CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEE-EEEeCCCCC--ccccccccCCCCCCCCcE
Q 038611 175 ---------DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFV-LILDDMWEA--FPLEKVGIPEPNKENGCK 242 (837)
Q Consensus 175 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~L-lVlDdv~~~--~~~~~l~~~~~~~~~~s~ 242 (837)
.-+-+.++|+++.....+-. ....+.|= +|+-.+++- +.-..+......-.+.+|
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 12334555555554321100 00223443 444444421 111111111111134566
Q ss_pred EEEEeCCh--hHhh-hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCC-
Q 038611 243 LVITTRSY--RVCR-SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGE- 318 (837)
Q Consensus 243 iivTtR~~--~v~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~- 318 (837)
+|+.--+- -+.. ...+-.+++...+++|....+.+.+....-.- -++++.+|+++++|.---...+...++-+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 66532221 1111 12233389999999999999988776553333 36789999999999665444444333321
Q ss_pred ---------cCHHHHHHHHHHHHhccc
Q 038611 319 ---------EEIYEWQNALNELRGRLR 336 (837)
Q Consensus 319 ---------~~~~~w~~~l~~l~~~~~ 336 (837)
-..-+|+-++.++.....
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~i~ 263 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARVIL 263 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHHHH
Confidence 124679888887765443
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.89 E-value=0.07 Score=56.73 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHh--h-cCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQK--E-TNKFNVVIWVTVSQPLDLIKLQTEIATALKES 190 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~--~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 190 (837)
-++.-|+|.+|+|||+|+.+++-.... . ...-..++||+....|+..++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 478889999999999999988643311 1 12235789999999899888654 56666543
No 278
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.88 E-value=0.052 Score=57.76 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=42.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHh--hc-CCCCeEEEEEeCCCcCHHHHHHHHHHHhcCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQK--ET-NKFNVVIWVTVSQPLDLIKLQTEIATALKES 190 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~-~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 190 (837)
..++-|+|.+|+|||+||..++-.... .. ..-..++||+....++..++. +|++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 578889999999999999988754311 11 122369999999988887764 556666543
No 279
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.82 E-value=0.062 Score=54.55 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
..+++.|+|.+|+|||+||.++..... ..-..++|++..+. ..++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHH
Confidence 358999999999999999999966531 23467899988764 3444444
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.80 E-value=0.075 Score=58.49 Aligned_cols=88 Identities=24% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCCCC---CccHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESLPE---NEDKVSRAGRLL 205 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 205 (837)
.+.+|.++|.+|+||||.|..++..+. .. . ..+..|++.. .+...+.++.++.+++.+... ..+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~-g-~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KK-G-LKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-Hc-C-CeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998873 22 2 2455555432 122344566677776654321 122223333333
Q ss_pred HHHhcCCeEEEEEeCCC
Q 038611 206 GMLKAKAKFVLILDDMW 222 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~ 222 (837)
+.. .+. =+||+|..-
T Consensus 171 ~~~-~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKF-KKA-DVIIVDTAG 185 (437)
T ss_pred HHh-hcC-CEEEEECCC
Confidence 333 223 567888774
No 281
>PTZ00035 Rad51 protein; Provisional
Probab=95.79 E-value=0.086 Score=56.29 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHh---hcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQTEIATALKE 189 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 189 (837)
...++.|+|.+|+|||||+..++-.... ....-..++||+....++..++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3589999999999999999988755421 0112345789998777777664 444555543
No 282
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.77 E-value=0.044 Score=65.22 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=36.0
Q ss_pred cccccchhHHHHHHHHHhcC------CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG------DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|. ++.++.|++++.. ....++.++|++|+||||+|+.++...
T Consensus 323 ~~~g~--~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 323 DHYGL--ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hccCH--HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46776 6677888877642 245789999999999999999999865
No 283
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.75 E-value=0.07 Score=55.15 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHH--HHHHHHHHHhcC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI--KLQTEIATALKE 189 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~ 189 (837)
+.++|.++|++|+||||.+..++.... . ....+.+++.. .+... +-++..++..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~--~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-K--QGKSVLLAAGD-TFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-h--cCCEEEEEeCC-CCCHHHHHHHHHHHHhCCe
Confidence 468999999999999999999998762 2 22456666544 33332 233445555553
No 284
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.00053 Score=67.48 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccc--cccCCCCCCEEec
Q 038611 514 MHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPE--GMQMLENLSHLYL 591 (837)
Q Consensus 514 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l 591 (837)
+.+.+.|++.+|.+..+. -...++.|+.|.|+- +.++.+..+..+++|+.|.|+.|.|.++.+ -+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344555666666655543 234556666666665 345555555566666666666665554432 2355566666665
Q ss_pred cCCC
Q 038611 592 YSPP 595 (837)
Q Consensus 592 ~~~~ 595 (837)
..|+
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5543
No 285
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.74 E-value=0.044 Score=53.05 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE---eCCCcCHHHHH------HHHHHHhcCCC------CCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT---VSQPLDLIKLQ------TEIATALKESL------PEN 194 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~---vs~~~~~~~~~------~~i~~~l~~~~------~~~ 194 (837)
.-.+++|+|..|.|||||++.++.... .....+++. +.. .+..... .++++.++... ...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 357999999999999999999987641 223333332 221 1222211 12344444321 111
Q ss_pred ccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc---ccccccCCCC--CCCCcEEEEEeCChhHhhh
Q 038611 195 EDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP---LEKVGIPEPN--KENGCKLVITTRSYRVCRS 255 (837)
Q Consensus 195 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~l~~~~~~--~~~~s~iivTtR~~~v~~~ 255 (837)
..-..+...+.+.+ ...+-++++|+.-..-+ ...+...+.. ...+..||++|.+.+....
T Consensus 99 S~G~~qrl~laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 99 SGGERQRVLLARAL-AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 11222333445555 45688899999864432 1222211111 1225688888888765433
No 286
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.70 E-value=0.0092 Score=54.03 Aligned_cols=22 Identities=59% Similarity=0.904 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 287
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.69 E-value=0.011 Score=58.04 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHH-HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI-KLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
.+|.|+|+.|.||||++..+..... ......+++-.. +.... .-...+..+-.. . .+.......+...+ .
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~e~-~~E~~~~~~~~~i~q~~v--g--~~~~~~~~~i~~aL-r 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTIED-PIEFVHESKRSLINQREV--G--LDTLSFENALKAAL-R 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEEcC-CccccccCccceeeeccc--C--CCccCHHHHHHHHh-c
Confidence 4789999999999999999887652 222333333221 11100 000011111000 0 01111122233334 4
Q ss_pred CCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhH
Q 038611 211 KAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRV 252 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v 252 (837)
..+=.|++|++.+.+......... ..|..++.|+-..++
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 457799999998766544322221 335567777776544
No 288
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.68 E-value=0.1 Score=55.55 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
...++-|+|.+|+|||+++.+++...... ...-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 35889999999999999999998764211 0111379999998888877654 4455544
No 289
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.68 E-value=0.11 Score=55.41 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHHHHHHHHhcC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKE 189 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 189 (837)
...++-|+|.+|+|||++|.+++....... ..-..++||+....++..++. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 358999999999999999999986642111 112479999998888877665 34455543
No 290
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.0015 Score=64.38 Aligned_cols=97 Identities=24% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc---cccccCCCCE
Q 038611 489 CEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP---SVAKLLALQH 565 (837)
Q Consensus 489 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp---~~~~l~~L~~ 565 (837)
+.+.+.|++.+| .+..|. +..+|+.|.+|.||-|.|+++. .+..+++|+.|+|+.| .+..+. .+.++++|++
T Consensus 18 l~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCC-CccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 455667777777 566554 3578999999999999998886 5788999999999884 455554 3778889999
Q ss_pred EeccCCcCc-cccc-----cccCCCCCCEEe
Q 038611 566 LDLRGTSIE-EVPE-----GMQMLENLSHLY 590 (837)
Q Consensus 566 L~l~~~~i~-~lp~-----~~~~l~~L~~L~ 590 (837)
|-|..|... .-+. -+.-|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 988877322 1121 246788888887
No 291
>PRK14974 cell division protein FtsY; Provisional
Probab=95.66 E-value=0.11 Score=55.04 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCCCC---CccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKESLPE---NEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 204 (837)
++.+|.++|+.|+||||++..++..+. . ..+ .++.+. .+.+. ..+-++..+..++.+... ..+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-K-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999999999988763 2 223 344444 33332 233455666777654321 11222222222
Q ss_pred HHHH-hcCCeEEEEEeCCCC
Q 038611 205 LGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 205 ~~~l-~~~k~~LlVlDdv~~ 223 (837)
.+.. ..+.. +|++|-...
T Consensus 215 i~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCC-EEEEECCCc
Confidence 2221 12333 888898754
No 292
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.66 E-value=0.052 Score=58.65 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCc-cHHHHHHHHHHHHh
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENE-DKVSRAGRLLGMLK 209 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 209 (837)
-.++.|.|.+|+|||||+.+++..... ....++|++..+. ..++ +.-++.++....... .....+..+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 479999999999999999999987632 2346888876543 3332 222345553321100 00111233444444
Q ss_pred cCCeEEEEEeCCCC
Q 038611 210 AKAKFVLILDDMWE 223 (837)
Q Consensus 210 ~~k~~LlVlDdv~~ 223 (837)
..+.-+||+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 45677888898854
No 293
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.64 E-value=0.026 Score=66.63 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=33.8
Q ss_pred cccccchhHHHHHHHHHhcC--------C-CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--------D-KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--------~-~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. ++.++.|.+.+.. . ....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ--~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQ--DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCc--HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 57787 5566666666541 1 23578999999999999999998875
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.61 E-value=0.064 Score=54.07 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
..++.|.|.+|.||||+|.++.....+ .-..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCCC--CHHHHHHHH
Confidence 469999999999999998777665421 124567777443 345555554
No 295
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.032 Score=55.89 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcC----------CC---CeEEEEEeCC----Cc--CH---------------
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETN----------KF---NVVIWVTVSQ----PL--DL--------------- 176 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~vs~----~~--~~--------------- 176 (837)
-..++|+|+.|.|||||.+.+..-.....+ .+ ..+.||.-.. .+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 479999999999999999999874321111 01 3466664211 11 11
Q ss_pred -------HHHHHHHHHHhcCCC-----CCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC------ccccccccCCCCCC
Q 038611 177 -------IKLQTEIATALKESL-----PENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA------FPLEKVGIPEPNKE 238 (837)
Q Consensus 177 -------~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~ 238 (837)
.+...+.++.++... -..-+-.+...-++.+.+..++=|+|||.--.. ....++...+. .
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~ 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--Q 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--H
Confidence 133344445544321 111122233333344444678999999985432 22333333332 2
Q ss_pred CCcEEEEEeCChhHhhh
Q 038611 239 NGCKLVITTRSYRVCRS 255 (837)
Q Consensus 239 ~~s~iivTtR~~~v~~~ 255 (837)
.|+.|+++|-+-+....
T Consensus 188 eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCCEEEEEeCCcHHhHh
Confidence 38899999999765444
No 296
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.01 Score=58.58 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=69.6
Q ss_pred hcccccceecccCccccCCCccccccCCCCEEeccCC--cCc-cccccccCCCCCCEEeccCCCCCC---CCCCcccCCc
Q 038611 535 SDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGT--SIE-EVPEGMQMLENLSHLYLYSPPLKE---LPAGLLPRLR 608 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~l~~---~p~~~l~~l~ 608 (837)
..+..|+.|++.++ .++.+-.+-.|++|++|.++.| .+. .++.-..++++|++|++++|.++. +++ +..+.
T Consensus 40 d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELE 116 (260)
T ss_pred ccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhc
Confidence 34556777777664 3444445677889999999999 433 455556677999999999998764 333 57788
Q ss_pred cCcEEEccccc--hhhhhhHHHHhhhhhccCeeEEee
Q 038611 609 KLCRLSLYFGW--EALEETVEETGRLSDRLDTFEGHF 643 (837)
Q Consensus 609 ~L~~L~l~~~~--~~~~~~~~~l~~l~~~L~~L~l~~ 643 (837)
+|..|+++.|. +....--..+.-+ ++|++|+...
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll-~~L~~LD~~d 152 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLL-PSLKYLDGCD 152 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHh-hhhccccccc
Confidence 88888884443 2222223344445 7888776644
No 297
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.58 E-value=0.0071 Score=59.60 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=52.2
Q ss_pred cCCCCcEEEecCCCCcc-----cChhhhcccccceecccCcc--cc-CCC--------ccccccCCCCEEeccCCcCc-c
Q 038611 513 HMHGLKILNLSFTAIEV-----LPNSVSDLMNLISLLLQRCR--RL-KRV--------PSVAKLLALQHLDLRGTSIE-E 575 (837)
Q Consensus 513 ~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~--~l-~~l--------p~~~~l~~L~~L~l~~~~i~-~ 575 (837)
.+..+..+|||+|.|.. +...|.+-.+|+..++++-. .. ..+ |.+-++++|+..+|+.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35566666666666542 33344445556655555311 00 011 23567888888888888543 3
Q ss_pred ccc----cccCCCCCCEEeccCCCCCCCCC
Q 038611 576 VPE----GMQMLENLSHLYLYSPPLKELPA 601 (837)
Q Consensus 576 lp~----~~~~l~~L~~L~l~~~~l~~~p~ 601 (837)
.|+ -+.+-+.|.||.+++|.+..+..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 443 34666888899888887765543
No 298
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.072 Score=56.60 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
..+++.|+|+.|+||||++..++..... . ...+.+|+..... ...+-++..++.++.+.....+.. .+...++.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~-~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~-dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK-Q--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPA-ELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHH-HHHHHHHHH
Confidence 3589999999999999999999977622 2 2456677654322 234455666666665432222222 223333333
Q ss_pred h-cCCeEEEEEeCCCC
Q 038611 209 K-AKAKFVLILDDMWE 223 (837)
Q Consensus 209 ~-~~k~~LlVlDdv~~ 223 (837)
. .+..=+|++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 2 13345677787743
No 299
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.55 E-value=0.011 Score=57.92 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
||+|.|.+|+||||+|+.+...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 300
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.067 Score=57.89 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQPLD--LIKLQTEIATALKESLPENEDKVSRAGRLLG 206 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 206 (837)
..++|.++|+.|+||||.+..++..+.... ..-..+..+++.. +. ...-++..++.++.+....... ..+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~-~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESF-KDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcH-HHHHHHHH
Confidence 357999999999999999999998763221 1234566666543 33 2233666677676654332222 22333333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 038611 207 MLKAKAKFVLILDDMWE 223 (837)
Q Consensus 207 ~l~~~k~~LlVlDdv~~ 223 (837)
.+ .+.=+|++|.+..
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 33 3456788898853
No 301
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.54 E-value=0.0029 Score=72.23 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=35.8
Q ss_pred EEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhccccccccccc-CCCcceEecccccccccc
Q 038611 743 VLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILT-LPRLKKLEFHYLPEFKTF 821 (837)
Q Consensus 743 ~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~p~L~~L~L~~~p~L~~i 821 (837)
.+.+.+|+.++ ..-.........|+.|++..|.....-... .... ..++..+.+.+|+.....
T Consensus 380 ~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~---------------~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 380 ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLR---------------CLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchH---------------HHhhhhhccccCCccCcccccch
Confidence 45566776663 211112223334888888888655433110 0111 667888888888777655
Q ss_pred cC
Q 038611 822 CS 823 (837)
Q Consensus 822 ~~ 823 (837)
..
T Consensus 444 ~~ 445 (482)
T KOG1947|consen 444 SL 445 (482)
T ss_pred hh
Confidence 43
No 302
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.51 Score=53.91 Aligned_cols=93 Identities=18% Similarity=0.281 Sum_probs=60.9
Q ss_pred CccccccchhHHHHHHHHHhcC---------C---CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 107 TETLVGEKTKKVVEIIWENLMG---------D---KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~~---------~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
+.++=|- ++.+.+|.+-+.= . +.+-|.++|++|.|||-+|++|+-..+ ..|++|..+
T Consensus 671 WdDVGGL--eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP- 739 (953)
T KOG0736|consen 671 WDDVGGL--EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP- 739 (953)
T ss_pred hhcccCH--HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH-
Confidence 3355555 6677777766532 1 246889999999999999999987641 456666543
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 038611 175 DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 223 (837)
+++... +| ..++.+.++.+.-...++++|.+|.+++
T Consensus 740 ---ELLNMY---VG-------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMY---VG-------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHH---hc-------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 122111 11 1234455666666677899999999975
No 303
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.52 E-value=0.028 Score=52.04 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.-.+++|+|..|.|||||++.+..... .....+|+.-.. .++.- .....-..+...+.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral- 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLL- 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHH-
Confidence 347999999999999999999987642 122233332100 00000 00111122233345555
Q ss_pred cCCeEEEEEeCCCCCcc---ccccccCCCCCCCCcEEEEEeCChhHhhh
Q 038611 210 AKAKFVLILDDMWEAFP---LEKVGIPEPNKENGCKLVITTRSYRVCRS 255 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~---~~~l~~~~~~~~~~s~iivTtR~~~v~~~ 255 (837)
..++-++++|+.-..-+ ...+...+... +..||++|.+.+.+..
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 34677889999764422 11222112111 2468888888665543
No 304
>PRK04328 hypothetical protein; Provisional
Probab=95.52 E-value=0.079 Score=54.18 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
.-+++.|.|.+|.|||+||.++..... .....++|++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCCH
Confidence 458999999999999999999776531 234668999876643
No 305
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.52 E-value=0.012 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 306
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.51 E-value=0.055 Score=50.42 Aligned_cols=116 Identities=20% Similarity=0.116 Sum_probs=61.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC---CcCHHHHHHHHHHHh-----cCC--CCCCccHH--H
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQTEIATAL-----KES--LPENEDKV--S 199 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~~l-----~~~--~~~~~~~~--~ 199 (837)
.+|-|++..|.||||+|..++-.. ..+-..+.+|..-. ..+...+++.+- .+ +.. ........ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 578889999999999999888765 23334455544322 334444444331 01 000 00011111 1
Q ss_pred ----HHHHHHHHHhcCCeEEEEEeCCCCC-----ccccccccCCCCCCCCcEEEEEeCChh
Q 038611 200 ----RAGRLLGMLKAKAKFVLILDDMWEA-----FPLEKVGIPEPNKENGCKLVITTRSYR 251 (837)
Q Consensus 200 ----~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~s~iivTtR~~~ 251 (837)
......+.+..+.-=|+|||++-.. ...+++...+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1112233333456679999998543 223333333334455678999999953
No 307
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.056 Score=49.38 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=32.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCC
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKES 190 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 190 (837)
+|.|-|++|.||||+|+.++++.. .. .| +...+.++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-----l~---~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-----LK---LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-----Cc---ee------eccHHHHHHHHHcCCC
Confidence 689999999999999999999871 11 11 2345677788777764
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.057 Score=58.33 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
..++.++|++|+||||+|.+++..... ... ..+..++. +.+. ....++..++.++.+... ......+...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G-~~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~----~~~~~~l~~~l 295 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL-HMG-KSVSLYTT-DNYRIAAIEQLKRYADTMGMPFYP----VKDIKKFKETL 295 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CeEEEecc-cchhhhHHHHHHHHHHhcCCCeee----hHHHHHHHHHH
Confidence 468999999999999999999875421 112 23444433 3322 233344455555543321 11123334344
Q ss_pred hcCCeEEEEEeCC
Q 038611 209 KAKAKFVLILDDM 221 (837)
Q Consensus 209 ~~~k~~LlVlDdv 221 (837)
.....=+||+|-.
T Consensus 296 ~~~~~D~VLIDTa 308 (432)
T PRK12724 296 ARDGSELILIDTA 308 (432)
T ss_pred HhCCCCEEEEeCC
Confidence 3333345788843
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.49 E-value=0.057 Score=54.19 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-----CcCHHHHHHHHHHHhcCCC------CCCccHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-----PLDLIKLQTEIATALKESL------PENEDKV 198 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~ 198 (837)
+..+++|||.+|+||||+++.+..-. ...+. .+++.-.+ .....+...+++..++... +..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45899999999999999999998754 22222 33333221 1123334556666655332 1111222
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCCccc------cccccCCCCCCCCcEEEEEeCChhHhhhCCcc
Q 038611 199 SRAGRLLGMLKAKAKFVLILDDMWEAFPL------EKVGIPEPNKENGCKLVITTRSYRVCRSMKCK 259 (837)
Q Consensus 199 ~~~~~l~~~l~~~k~~LlVlDdv~~~~~~------~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~ 259 (837)
++..-.+.+.+.-++-+||.|..-+..+. -.+...+ ....|-..++.|-+-.++..+...
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhccc
Confidence 22222233333668999999997654321 1111112 123456788888887877766544
No 310
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.49 E-value=0.018 Score=64.00 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=38.2
Q ss_pred cccccchhHHHHHHHHHh------cCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENL------MGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. ++.+++|++.+ .+..-+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGl--ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGM--EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCc--HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57888 77888888877 23456899999999999999999999977
No 311
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.48 E-value=0.093 Score=51.41 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC-------CeEEEEEeCCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKF-------NVVIWVTVSQP 173 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-------~~~~wv~vs~~ 173 (837)
-.++.|+|++|+||||++.++..........| ..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 36899999999999999999998874322222 35888876665
No 312
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.48 E-value=0.031 Score=53.97 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34789999999999999999998764
No 313
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.47 E-value=0.064 Score=55.19 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
.-+++.|.|.+|+|||++|.+++.... ..-..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC
Confidence 358999999999999999999876542 22456888887643
No 314
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.43 E-value=0.014 Score=58.15 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999875
No 315
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.40 E-value=0.074 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|.|+|.+|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 316
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.072 Score=59.16 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+|+|+|.+|+||||++.+++..... ......+..++.... ......++...+.++.......+ ...+...++.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l- 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERL- 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHh-
Confidence 589999999999999999999887522 222344555554321 11222333333444433222112 22233444444
Q ss_pred cCCeEEEEEeCCC
Q 038611 210 AKAKFVLILDDMW 222 (837)
Q Consensus 210 ~~k~~LlVlDdv~ 222 (837)
. ..=+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 2 34577888874
No 317
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.031 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 318
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.37 E-value=0.04 Score=50.67 Aligned_cols=42 Identities=29% Similarity=0.262 Sum_probs=31.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
|.++|++|+|||+||+.+++.. -....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee
Confidence 6789999999999999999876 12345567788777776653
No 319
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.36 E-value=0.076 Score=60.09 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=41.5
Q ss_pred HHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhc
Q 038611 120 EIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 188 (837)
Q Consensus 120 ~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 188 (837)
..+-+.+..+ .-+++.|.|.+|+|||||+.++..... .....+++++..+. ..++.... +.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 3344445443 458999999999999999999988762 23456788876654 33444332 4444
No 320
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.34 E-value=0.054 Score=56.10 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHH
Q 038611 117 KVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEIN 152 (837)
Q Consensus 117 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~ 152 (837)
.+...-+++|.++++..|.+.|.+|.|||.||-+..
T Consensus 231 ~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 231 AEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred HHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 344555788899999999999999999999987644
No 321
>PRK07667 uridine kinase; Provisional
Probab=95.33 E-value=0.024 Score=55.47 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 120 EIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 120 ~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.|.+.+.. +...+|+|.|.+|.||||+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555543 334799999999999999999999876
No 322
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.30 E-value=0.056 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999886
No 323
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.29 E-value=0.049 Score=53.07 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=28.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
++.|.|.+|+|||+||.++.....+ .-..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCC
Confidence 3679999999999999998876522 2355888876553
No 324
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.29 E-value=0.039 Score=59.34 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++-|.++|++|+|||++|+.++...
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999876
No 325
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.24 E-value=1.5 Score=47.26 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhcCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--DLIKLQTEIATALKESL 191 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~ 191 (837)
.+.||-.+|.-|.||||-|-++++.+.+ + -..+.-|+ .+.+ ...+-++.++.+++.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~--~~kvllVa-aD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-K--GKKVLLVA-ADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-c--CCceEEEe-cccCChHHHHHHHHHHHHcCCce
Confidence 3679999999999999999999998833 2 22233333 3333 44445778888887654
No 326
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.24 E-value=0.1 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 327
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.23 E-value=0.017 Score=53.51 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998764
No 328
>PRK08233 hypothetical protein; Provisional
Probab=95.22 E-value=0.016 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999875
No 329
>PTZ00301 uridine kinase; Provisional
Probab=95.22 E-value=0.025 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|.+|.||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 330
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.21 E-value=0.045 Score=52.13 Aligned_cols=117 Identities=10% Similarity=0.117 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC--C---CeEEEEEeCCCcCH--HHHHHHHHHHhcCCCCCCccHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNK--F---NVVIWVTVSQPLDL--IKLQTEIATALKESLPENEDKVSRAG 202 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~--f---~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 202 (837)
.-.+++|+|..|.|||||++.+........+. + ..+.++ .+.+.. ..+...+.-. .......-..+.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 34799999999999999999998764221111 1 112222 232211 1222222110 1111222233333
Q ss_pred HHHHHHhcCCeEEEEEeCCCCCccc---cccccCCCCCCCCcEEEEEeCChhHhh
Q 038611 203 RLLGMLKAKAKFVLILDDMWEAFPL---EKVGIPEPNKENGCKLVITTRSYRVCR 254 (837)
Q Consensus 203 ~l~~~l~~~k~~LlVlDdv~~~~~~---~~l~~~~~~~~~~s~iivTtR~~~v~~ 254 (837)
.+.+.+ ..++=++++|+.-..-+. ..+...+... +..||++|.+.....
T Consensus 101 ~laral-~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLL-LHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHH-HcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 455555 456778899987654321 1121111111 356888888876543
No 331
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.071 Score=56.33 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=62.8
Q ss_pred HHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCC-cc
Q 038611 120 EIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPEN-ED 196 (837)
Q Consensus 120 ~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~ 196 (837)
.++-..|..+ .-++|.|-|-+|+|||||..+++.+.... - .+.+|+-.+. ..++ +--++.|+...... --
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEe
Confidence 3444445444 34899999999999999999999987322 2 6888865543 3222 23345565433211 11
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 038611 197 KVSRAGRLLGMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 197 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 224 (837)
....++.+.+.+...++-++|+|-+...
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQTL 180 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEecccee
Confidence 2334566677776788999999998653
No 332
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.13 Score=52.81 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 180 (837)
-+++=|+|+.|.||||+|.+++-..+ .....++|++.-..+++..+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~ 106 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAK 106 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHH
Confidence 47889999999999999999887652 334489999998888887754
No 333
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.18 E-value=0.11 Score=60.89 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
.+-|.|+|++|.|||++|+.+++.. ...| +.++.++ +. .... .........+......
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------~~----~~~~------g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------FV----EMFV------GVGASRVRDMFEQAKK 242 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------hH----Hhhh------cccHHHHHHHHHHHHh
Confidence 3569999999999999999998865 2222 2332221 11 0000 0011222333333335
Q ss_pred CCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhHhhh-----CCcce-EEeccC
Q 038611 211 KAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRVCRS-----MKCKQ-VEVELL 266 (837)
Q Consensus 211 ~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v~~~-----~~~~~-~~l~~L 266 (837)
..+.+|+||+++.... +..+...+. ....+..||.||...+.... ..... +.+...
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 5789999999965311 111111111 11334455567776654221 11223 778888
Q ss_pred CHHhHHHHHHHHhCC
Q 038611 267 SKEEAFNLFIDRVGS 281 (837)
Q Consensus 267 ~~~~~~~Lf~~~~~~ 281 (837)
+.++-.+++..+...
T Consensus 323 d~~~R~~Il~~~~~~ 337 (644)
T PRK10733 323 DVRGREQILKVHMRR 337 (644)
T ss_pred CHHHHHHHHHHHhhc
Confidence 888888888776644
No 334
>PRK06217 hypothetical protein; Validated
Probab=95.16 E-value=0.031 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 335
>PRK06762 hypothetical protein; Provisional
Probab=95.16 E-value=0.018 Score=54.96 Aligned_cols=25 Identities=44% Similarity=0.605 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 336
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.15 E-value=0.052 Score=51.98 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc--CC---CC--eEEEEEeCCCcCHHHHHHHHHHHhcCCCC---C----Cc
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET--NK---FN--VVIWVTVSQPLDLIKLQTEIATALKESLP---E----NE 195 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~~---f~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~----~~ 195 (837)
.-.+++|+|+.|+|||||.+.+..+..... .. |. .+.|+ .+ .+.+..++.... . ..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 357999999999999999998864211110 00 00 12222 11 345555554211 1 11
Q ss_pred cHHHHHHHHHHHHhcCC--eEEEEEeCCCCCccc---cccccCCCC-CCCCcEEEEEeCChhHhh
Q 038611 196 DKVSRAGRLLGMLKAKA--KFVLILDDMWEAFPL---EKVGIPEPN-KENGCKLVITTRSYRVCR 254 (837)
Q Consensus 196 ~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~~---~~l~~~~~~-~~~~s~iivTtR~~~v~~ 254 (837)
.-......+.+.+ ..+ +-++++|+.-..-+. ..+...+.. ...|..||++|.+.+...
T Consensus 90 gGq~qrl~laral-~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASEL-FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHH-hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1122223344444 345 678888997654321 112111111 124667889998877654
No 337
>PRK10867 signal recognition particle protein; Provisional
Probab=95.11 E-value=0.11 Score=57.00 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.+|.++|.+|+||||.|..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999999998876
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.10 E-value=0.07 Score=51.18 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|..|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45799999999999999999998754
No 339
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.64 Score=48.61 Aligned_cols=165 Identities=10% Similarity=0.075 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHH--------hhcCCCCeEEEEEe-CCCcCHHHHHHHHHHHhc
Q 038611 119 VEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQ--------KETNKFNVVIWVTV-SQPLDLIKLQTEIATALK 188 (837)
Q Consensus 119 ~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~--------~~~~~f~~~~wv~v-s~~~~~~~~~~~i~~~l~ 188 (837)
++.+...+..++ .++..++|..|.||+++|..+.+..- ...+.++ +.++.. +......++. ++.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n-~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN-IILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcc-eEEeccCCCcCCHHHHH-HHHHHhc
Confidence 445556666655 46777999999999999999988751 1111222 222321 1222222222 2222221
Q ss_pred CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc--ccccccCCCCCCCCcEEEE-EeCChhHhhh--CCcceEEe
Q 038611 189 ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP--LEKVGIPEPNKENGCKLVI-TTRSYRVCRS--MKCKQVEV 263 (837)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~s~iiv-TtR~~~v~~~--~~~~~~~l 263 (837)
.. ....+.+-++|+|++..... ...+...+..-...+.+|+ |+....+... ..+..+++
T Consensus 83 ~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 83 FS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred cC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 11 00124677888899865432 3333333322234555555 4444444432 23445999
Q ss_pred ccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 264 ELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 264 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
.++++++....+... +. -.+.+..++...+|.--|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~~--------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-NK--------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-CC--------ChhHHHHHHHHcCCHHHHHHH
Confidence 999999988777653 21 223456666666663344444
No 340
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.08 E-value=0.017 Score=50.41 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
|.|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998873
No 341
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.08 E-value=0.012 Score=60.88 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHH
Q 038611 119 VEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKV 198 (837)
Q Consensus 119 ~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 198 (837)
...+++.+...+ +-+.++|+.|+|||++++...... . ...+ .+.-++.+...+...+++.|-..+.......-..
T Consensus 22 ~~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP- 96 (272)
T PF12775_consen 22 YSYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP- 96 (272)
T ss_dssp HHHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE-
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-
Confidence 345555555444 455899999999999999987654 1 1111 2344555554444444332222221111000000
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCC
Q 038611 199 SRAGRLLGMLKAKAKFVLILDDMW 222 (837)
Q Consensus 199 ~~~~~l~~~l~~~k~~LlVlDdv~ 222 (837)
..+|+.++.+||+.
T Consensus 97 ----------~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 97 ----------PGGKKLVLFIDDLN 110 (272)
T ss_dssp ----------ESSSEEEEEEETTT
T ss_pred ----------CCCcEEEEEecccC
Confidence 15689999999985
No 342
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.07 E-value=0.099 Score=46.15 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=33.7
Q ss_pred cccccch--hHHHHHHHHHhcC---CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKT--KKVVEIIWENLMG---DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~--~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|... +..++.|...+.+ .++-|++.+|.+|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5677632 2334444455544 356799999999999999999999885
No 343
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.06 E-value=0.05 Score=54.90 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
..+++.|.|.+|+|||+||.++....... .-..++||+..+++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP 60 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH
Confidence 45899999999999999999977554222 13568899876654
No 344
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.02 E-value=0.022 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 345
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.01 E-value=0.02 Score=56.85 Aligned_cols=26 Identities=42% Similarity=0.604 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999875
No 346
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.059 Score=51.65 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|..|.|||||++.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45799999999999999999998764
No 347
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.01 E-value=0.027 Score=56.39 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|.|+|++|+||||+|+.+++.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998875
No 348
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.99 E-value=0.0044 Score=70.74 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=29.1
Q ss_pred cccEEEEecCCCCCcchhhhhhhh-cCCccEEEeccccchhhh
Q 038611 740 DLKVLRFYYCNNLKNLFSLRLLPA-LKNLECLEVCGCDSIEEI 781 (837)
Q Consensus 740 ~L~~L~l~~c~~l~~l~~~~~~~~-L~~L~~L~l~~c~~l~~i 781 (837)
.|+.|.+..|...+.- .+..... +.+++.+++.+|+.+...
T Consensus 402 ~l~~L~l~~~~~~t~~-~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDK-GLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccceEecccCcccccc-chHHHhhhhhccccCCccCcccccch
Confidence 4899999999877664 2222222 678888999999877654
No 349
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.091 Score=50.45 Aligned_cols=26 Identities=42% Similarity=0.543 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998754
No 350
>PRK03839 putative kinase; Provisional
Probab=94.98 E-value=0.021 Score=55.29 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 351
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.95 E-value=0.15 Score=56.11 Aligned_cols=91 Identities=22% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKESLP---ENEDKVSRAGRLL 205 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 205 (837)
.+.++.++|.+|+||||.|..++...... . ...++-|++... +...+-++......+.+.- ...+.........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-Q-GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-C-CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 36799999999999999999998875211 1 223455544321 1223334445555554321 1122222333333
Q ss_pred HHHhcCCeEEEEEeCCC
Q 038611 206 GMLKAKAKFVLILDDMW 222 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~ 222 (837)
+.......=+||+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33322222267777664
No 352
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.93 E-value=0.096 Score=51.78 Aligned_cols=88 Identities=19% Similarity=0.388 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccHHH--
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKE-------SLPENEDKVS-- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~-- 199 (837)
+-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+++.. ...++.+++...-.. ...+......
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 34789999999999999999999875 23556888888654 455666666433110 1111111111
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEeCCC
Q 038611 200 ---RAGRLLGMLK-AKAKFVLILDDMW 222 (837)
Q Consensus 200 ---~~~~l~~~l~-~~k~~LlVlDdv~ 222 (837)
....+.+.+. +++..|+++||+-
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhH
Confidence 1111222222 6899999999984
No 353
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.92 E-value=0.27 Score=52.47 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCC----CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhcCCC
Q 038611 117 KVVEIIWENLMGD----KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKESL 191 (837)
Q Consensus 117 ~~~~~l~~~l~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 191 (837)
+....+..++.++ +-++|.+||+.||||||-..+++..+. ....-..+..|+...- -...+-++..++-++.+.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 3344555555444 479999999999999766666665552 1223345777765432 133444566777777765
Q ss_pred CCCccHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 038611 192 PENEDKVSRAGRLLGMLKAKAKFVLILDDMW 222 (837)
Q Consensus 192 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 222 (837)
.-..+..+....+ ..+ ... =+|.+|-+.
T Consensus 264 ~vv~~~~el~~ai-~~l-~~~-d~ILVDTaG 291 (407)
T COG1419 264 EVVYSPKELAEAI-EAL-RDC-DVILVDTAG 291 (407)
T ss_pred EEecCHHHHHHHH-HHh-hcC-CEEEEeCCC
Confidence 4433333333332 233 333 344456554
No 354
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.91 E-value=0.049 Score=49.97 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=27.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~--~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR--RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH--cCCceEEEEEccC
Confidence 58999999999999999999998732 3445555665544
No 355
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.11 Score=48.27 Aligned_cols=30 Identities=37% Similarity=0.587 Sum_probs=26.5
Q ss_pred hcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 126 LMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 126 l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+..||.+.|.+|.||||+|.+++..+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 345567899999999999999999999987
No 356
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.88 E-value=0.063 Score=48.51 Aligned_cols=114 Identities=18% Similarity=0.345 Sum_probs=64.6
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceec
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLL 544 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~ 544 (837)
.+++.+.+.. .+..++...|..+++|+.+.+..+ +..++...|.+++.|+.+.+.. .+..++. .+..+.+|+.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 3577777763 677888888999999999999764 7888888899998999999976 5555553 455689999999
Q ss_pred ccCccccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCC
Q 038611 545 LQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLS 587 (837)
Q Consensus 545 L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~ 587 (837)
+.. .+..++ .+.+. +|+.+.+.. .+..++. .+.++++|+
T Consensus 88 ~~~--~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPS--NITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETT--T-BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cCc--cccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 875 366666 47776 889888775 4455554 345555553
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.88 E-value=0.038 Score=52.43 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC--CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ--PLDLIKLQTEIATALKESLPENEDKVSRAGRLLGM 207 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 207 (837)
.-.+++|+|..|.|||||.+.++... ......+++.-.+ ..+..+.. .+.++.-. ....-..+...+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHH
Confidence 34799999999999999999998764 2233344443211 11111111 11111110 011222233344555
Q ss_pred HhcCCeEEEEEeCCCCCcc---ccccccCCCC-CCCCcEEEEEeCChhHhhh
Q 038611 208 LKAKAKFVLILDDMWEAFP---LEKVGIPEPN-KENGCKLVITTRSYRVCRS 255 (837)
Q Consensus 208 l~~~k~~LlVlDdv~~~~~---~~~l~~~~~~-~~~~s~iivTtR~~~v~~~ 255 (837)
+ -.++-++++|+.-..-+ ...+...+.. ...+..||++|.+......
T Consensus 97 l-~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 97 L-ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred H-hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5 45678889999865432 1112111111 1236678888888765443
No 358
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.86 E-value=0.075 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++++|+|+.|.|||||++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999997643
No 359
>PRK04040 adenylate kinase; Provisional
Probab=94.83 E-value=0.025 Score=54.98 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 360
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.83 E-value=0.14 Score=56.52 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.+++.++|++|+||||++..++.... .......+..|+..... ....-++...+.++.+.....+.. .....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~-~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPK-ELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHH-hHHHHHHHh-
Confidence 46999999999999999999987762 11223456777654321 122234444555554432222222 222233333
Q ss_pred cCCeEEEEEeCCC
Q 038611 210 AKAKFVLILDDMW 222 (837)
Q Consensus 210 ~~k~~LlVlDdv~ 222 (837)
. ..=+||+|..-
T Consensus 298 ~-~~DlVlIDt~G 309 (424)
T PRK05703 298 R-DCDVILIDTAG 309 (424)
T ss_pred C-CCCEEEEeCCC
Confidence 2 34577888763
No 361
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.11 Score=57.40 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.+.-|.+||++|+|||-||++|+|.. ... |++|..+ +++.... ......+..+.++-.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~N-----FisVKGP----ELlNkYV----------GESErAVR~vFqRAR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GAN-----FISVKGP----ELLNKYV----------GESERAVRQVFQRAR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCc-----eEeecCH----HHHHHHh----------hhHHHHHHHHHHHhh
Confidence 46788999999999999999999985 233 3444332 2222211 112334455666666
Q ss_pred cCCeEEEEEeCCCCC-------cc------ccccccCCCC--CCCCcEEEEEeCChhHhhh--C---Ccce-EEeccCCH
Q 038611 210 AKAKFVLILDDMWEA-------FP------LEKVGIPEPN--KENGCKLVITTRSYRVCRS--M---KCKQ-VEVELLSK 268 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~-------~~------~~~l~~~~~~--~~~~s~iivTtR~~~v~~~--~---~~~~-~~l~~L~~ 268 (837)
..-+++|.||.++.- .. ...+..-+.+ .-.|.-||-.|-.+++..- . .-+. .-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 778999999999742 11 1222222222 2345556656655555211 1 1122 44566666
Q ss_pred HhHHHHHHHHhC
Q 038611 269 EEAFNLFIDRVG 280 (837)
Q Consensus 269 ~~~~~Lf~~~~~ 280 (837)
+|-.+.++....
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
No 362
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.80 E-value=0.013 Score=34.34 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=11.9
Q ss_pred CCCEEeccCCcCccccccccC
Q 038611 562 ALQHLDLRGTSIEEVPEGMQM 582 (837)
Q Consensus 562 ~L~~L~l~~~~i~~lp~~~~~ 582 (837)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655443
No 363
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=0.15 Score=56.55 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKESL 191 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~ 191 (837)
..|++++|+.|+||||.+.+++.......+ ...+..|... .+. ..+-++...+.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTD-SYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCC-ccchhHHHHHHHHHHHhCCCe
Confidence 479999999999999999999987632222 2245555543 332 3334555566666543
No 364
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.79 E-value=0.12 Score=53.22 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
+.|.|.|.+|+||||+|+++.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999873
No 365
>PRK00625 shikimate kinase; Provisional
Probab=94.78 E-value=0.025 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.428 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 366
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.76 E-value=0.14 Score=53.03 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+.+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999887665
No 367
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.75 E-value=0.053 Score=60.19 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCcC-HHHHHHHHHHHhcCCCCCCcc-----HHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVV-IWVTVSQPLD-LIKLQTEIATALKESLPENED-----KVSRAG 202 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~-----~~~~~~ 202 (837)
.-.-..|+|.+|+|||||++.|++.... .+-++. +.+-|.+.+. +.++.+.+-..+-....+... ......
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 4577899999999999999999997632 233333 3445666543 333433331111111111111 111222
Q ss_pred HHHHHH-hcCCeEEEEEeCCCC
Q 038611 203 RLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 203 ~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
.+.+.+ ..++..||++|++-.
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchH
Confidence 233333 268899999999854
No 368
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.026 Score=54.22 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
..+|+|-||-|+||||||+.++++.. | .+++-.+.+++=+.....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~-----~-~~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG-----F-KVFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC-----C-ceeeecccCChHHHHHHHhH
Confidence 46899999999999999999999872 2 23444455554444444333
No 369
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.73 E-value=0.085 Score=57.19 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-.+++|+|++|.||||||+.+.--
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcc
Confidence 3479999999999999999988643
No 370
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.72 E-value=0.059 Score=58.00 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=33.1
Q ss_pred cccccchhHHHHHHHHHhcC--------------CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--------------DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. ++.++.+..++.. -..+-|.++|++|+|||++|+.+....
T Consensus 16 ~IiGQ--e~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 16 YIIGQ--DDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccCCH--HHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57787 5555555544422 014789999999999999999999876
No 371
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0053 Score=58.06 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=47.6
Q ss_pred cccccccEEEEecCCCCCcchhhhhh-hhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEeccc
Q 038611 736 KFSHDLKVLRFYYCNNLKNLFSLRLL-PALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHY 814 (837)
Q Consensus 736 ~~~~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 814 (837)
.+. .++.|.+.+|..+.+. .++.+ +-.++|+.|+|++|+.|++--- ..+..|++|+.|.|++
T Consensus 123 ~l~-~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~GL---------------~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLR-SIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITDGGL---------------ACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccc-hhhhheeccccchhhH-HHHHhcccccchheeeccCCCeechhHH---------------HHHHHhhhhHHHHhcC
Confidence 455 7778888888877775 33322 3456888888888888765411 1456788888888888
Q ss_pred cccccccc
Q 038611 815 LPEFKTFC 822 (837)
Q Consensus 815 ~p~L~~i~ 822 (837)
+|......
T Consensus 186 l~~v~~~e 193 (221)
T KOG3864|consen 186 LPYVANLE 193 (221)
T ss_pred chhhhchH
Confidence 87765543
No 372
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.71 E-value=0.24 Score=50.43 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCC------CCCccHHH--
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQK-ETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESL------PENEDKVS-- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~-- 199 (837)
+-.-++|.|-.|+|||+|+..+.++... .++.-+.++++-+++.. ...++..++...=..+. ........
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4578899999999999999999877520 12235778999888765 45566666554321110 11111111
Q ss_pred ----HHHHHHHHHh-c-CCeEEEEEeCCCCC
Q 038611 200 ----RAGRLLGMLK-A-KAKFVLILDDMWEA 224 (837)
Q Consensus 200 ----~~~~l~~~l~-~-~k~~LlVlDdv~~~ 224 (837)
....+.+.+. + +++.|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1223344443 2 68999999998643
No 373
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.69 E-value=0.095 Score=58.36 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCc-cHHHHHHHHHHHHh
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENE-DKVSRAGRLLGMLK 209 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 209 (837)
-.++.|.|.+|+|||||+.+++....+ .-..++|++..+. ..++.. .++.++.+..... .....+..+.+.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 479999999999999999999987632 2346788876543 333322 2445543221100 00011233444443
Q ss_pred cCCeEEEEEeCCCC
Q 038611 210 AKAKFVLILDDMWE 223 (837)
Q Consensus 210 ~~k~~LlVlDdv~~ 223 (837)
..+.-++|+|.+..
T Consensus 154 ~~~~~lVVIDSIq~ 167 (446)
T PRK11823 154 EEKPDLVVIDSIQT 167 (446)
T ss_pred hhCCCEEEEechhh
Confidence 44566788888743
No 374
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.012 Score=34.50 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=13.2
Q ss_pred CCcEEEecCCCCcccChhhhc
Q 038611 516 GLKILNLSFTAIEVLPNSVSD 536 (837)
Q Consensus 516 ~L~~L~L~~~~i~~lp~~i~~ 536 (837)
+|++|||++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366677777766666665443
No 375
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.027 Score=54.89 Aligned_cols=26 Identities=46% Similarity=0.655 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++-+|+|.|.+|.||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999887
No 376
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.52 Score=46.15 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
+++-+.++|++|.|||-||++|+++. .+-|+.||.. ++.++.+ |. .......+.--..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht--------~c~firvsgs----elvqk~i---ge-------gsrmvrelfvmar 237 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS----ELVQKYI---GE-------GSRMVRELFVMAR 237 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----HHHHHHh---hh-------hHHHHHHHHHHHH
Confidence 57889999999999999999999863 2456666653 1111111 10 0111122221122
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhHhhh----CC-cce-EEecc
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRVCRS----MK-CKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v~~~----~~-~~~-~~l~~ 265 (837)
..-+.+|..|.+++... .-++...+. ...+.-+||..|..-++... .+ .+. ++..+
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 34578888888864211 001111221 12445678877766555321 11 222 67777
Q ss_pred CCHHhHHHHHHHH
Q 038611 266 LSKEEAFNLFIDR 278 (837)
Q Consensus 266 L~~~~~~~Lf~~~ 278 (837)
-+++.-.+.++-+
T Consensus 318 p~e~ar~~ilkih 330 (404)
T KOG0728|consen 318 PNEEARLDILKIH 330 (404)
T ss_pred CCHHHHHHHHHHh
Confidence 7766666666543
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.24 Score=54.11 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+++++|+.|+||||++..++.... .....+.+..+.... .....+-+....+.++.+.....+..+.. ..+..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~-~al~~l- 267 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQ-LMLHEL- 267 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHH-HHHHHh-
Confidence 47999999999999999999987542 122234455554332 12333335556666665543323333322 222333
Q ss_pred cCCeEEEEEeCC
Q 038611 210 AKAKFVLILDDM 221 (837)
Q Consensus 210 ~~k~~LlVlDdv 221 (837)
.+ .-++++|-.
T Consensus 268 ~~-~d~VLIDTa 278 (420)
T PRK14721 268 RG-KHMVLIDTV 278 (420)
T ss_pred cC-CCEEEecCC
Confidence 33 345666765
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.28 Score=57.32 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
..+|+++|+.|+||||.+.+++..+.. ......+..++.. .+. ..+-++...+.++.+.....+... +...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAAL 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHh
Confidence 479999999999999999999987622 2222345555543 333 445566777777765433233322 34444444
Q ss_pred hcCCeEEEEEeCCC
Q 038611 209 KAKAKFVLILDDMW 222 (837)
Q Consensus 209 ~~~k~~LlVlDdv~ 222 (837)
.++ =+|++|-.-
T Consensus 262 -~~~-D~VLIDTAG 273 (767)
T PRK14723 262 -GDK-HLVLIDTVG 273 (767)
T ss_pred -cCC-CEEEEeCCC
Confidence 333 477778775
No 379
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.61 E-value=0.021 Score=50.52 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|.|+|.+|+||||+|+.++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 5789999999999999999875
No 380
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.59 E-value=2.2 Score=45.13 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=33.7
Q ss_pred eEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHH
Q 038611 260 QVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAI 308 (837)
Q Consensus 260 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 308 (837)
++++++++.+|+..++.-......-......+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 4789999999999999877655422111114556677777779998644
No 381
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.54 E-value=0.034 Score=53.04 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
..++.+.|+.|+|||.||+.+++... . +.....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~-~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF-V-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc-c-CCccchHHHhhhcc
Confidence 45788999999999999999998871 1 34455666666543
No 382
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.51 E-value=0.058 Score=54.49 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+...+|+|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 383
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.08 Score=51.62 Aligned_cols=50 Identities=34% Similarity=0.395 Sum_probs=34.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESL 191 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 191 (837)
.|+|+|-||+||||+|..+...... ++. ..+.=|....++++ .++||...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~-~~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGG-YNVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCC-ceEEEEeCCCCCCh-------HHhcCCCC
Confidence 5899999999999999997766522 222 33555666666654 44566554
No 384
>PF13245 AAA_19: Part of AAA domain
Probab=94.51 E-value=0.12 Score=41.63 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45788899999999995555544443
No 385
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.49 E-value=0.026 Score=55.58 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 386
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.47 E-value=0.21 Score=55.05 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
+-.-++|.|.+|+|||||+.++.+...+ .+-+.++++-+++.. ...++..++...-.... ........
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 4578999999999999999999987632 256788888887654 35555555544321110 11111111
Q ss_pred ---HHHHHHHHHh-c-CCeEEEEEeCCCC
Q 038611 200 ---RAGRLLGMLK-A-KAKFVLILDDMWE 223 (837)
Q Consensus 200 ---~~~~l~~~l~-~-~k~~LlVlDdv~~ 223 (837)
.+..+.+.+. + ++..|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223344442 3 7999999999954
No 387
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.45 E-value=0.066 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.+.|.-|.||||+++.+++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999999876
No 388
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.44 E-value=0.028 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 389
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.43 E-value=0.055 Score=57.50 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=43.1
Q ss_pred cCCCccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 104 MLPTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 104 ~~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
..|-+.+||. ++.+..|...+.+..+.-|.|.|..|.||||+|+.+++-..
T Consensus 13 ~~pf~~ivGq--~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQ--EEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhCh--HHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567789998 66777888888888888888999999999999999987763
No 390
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.42 E-value=0.13 Score=50.68 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|+|+|.+|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 391
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.40 E-value=0.033 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+++|+|+.|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998865
No 392
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.37 E-value=0.2 Score=54.56 Aligned_cols=89 Identities=16% Similarity=0.302 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCCC------CCCccHHHH--
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKESL------PENEDKVSR-- 200 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~~-- 200 (837)
....++|+|..|+|||||++.+++.. ..+.++.+-+++... ..++..+++..-+... ........+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 34789999999999999999988643 235666677776554 4555555543321110 111111111
Q ss_pred ----HHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 201 ----AGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 201 ----~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
+..+.+.+ -+++..|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11233333 268999999999854
No 393
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.37 E-value=0.09 Score=53.26 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=42.2
Q ss_pred HHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHH
Q 038611 120 EIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 120 ~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 180 (837)
.+++..+. .++..+|+|.|.+|+||+||.-.+...+ ...++--.++=|.-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 34555443 3577899999999999999999999888 444444455556666666544444
No 394
>PRK05439 pantothenate kinase; Provisional
Probab=94.36 E-value=0.25 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998865
No 395
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.36 E-value=0.04 Score=52.95 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 396
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.34 E-value=0.093 Score=53.97 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 119 VEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 119 ~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++....+...+..+|.|+|.+|.|||||+..+.+..
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555666789999999999999999999999876
No 397
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.33 E-value=0.032 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998874
No 398
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.29 E-value=0.16 Score=56.66 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=52.3
Q ss_pred HHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCc-cH
Q 038611 121 IIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENE-DK 197 (837)
Q Consensus 121 ~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~ 197 (837)
.+-..+..+ .-.++.|.|.+|+|||||+.+++..... . -..++|++..+. ..++.. -+..++....... ..
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~-~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~ 155 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK-N--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLS 155 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcC
Confidence 333444433 3479999999999999999999877622 1 235788876543 333221 2233432211000 00
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCC
Q 038611 198 VSRAGRLLGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 198 ~~~~~~l~~~l~~~k~~LlVlDdv~~ 223 (837)
......+...+...+.-++|+|.+..
T Consensus 156 e~~~~~I~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 156 ETNWEQICANIEEENPQACVIDSIQT 181 (454)
T ss_pred CCCHHHHHHHHHhcCCcEEEEecchh
Confidence 00123333444344566788887754
No 399
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.28 E-value=0.046 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..++++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 400
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.28 E-value=0.32 Score=50.56 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
-.++.|.|.+|+||||++.+++.... ...-..++|++.... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 46889999999999999999987752 222456889887653 34555555443
No 401
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.27 E-value=0.13 Score=56.20 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh-----cCCCCCCccHHHH----
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL-----KESLPENEDKVSR---- 200 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~---- 200 (837)
.-..++|+|..|+|||||++.+.... .....+++..-....++.++....+... ..-.........+
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34789999999999999999887643 2223344443323344554444333322 1111111111111
Q ss_pred --HHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 201 --AGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 201 --~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
...+.+.+ .+++..|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 11222333 258899999999854
No 402
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.25 E-value=1.2 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|.+|.||||+|+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 403
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.24 E-value=0.048 Score=52.61 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 404
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.23 E-value=0.17 Score=59.23 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLP-----ENEDKVSRAGRLL 205 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 205 (837)
.+++-|+|.+|+||||||.+++.... ..-..++|+.....++. ..+++++.+.. ........+..+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 58999999999999999988766542 23356899988777764 36666765432 1112222333333
Q ss_pred HHHhcCCeEEEEEeCCC
Q 038611 206 GMLKAKAKFVLILDDMW 222 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~ 222 (837)
..+..++.-+||+|-+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 33335567889999986
No 405
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.23 E-value=0.13 Score=53.96 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC----CccHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE----NEDKVSRAGRLLG 206 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 206 (837)
-+++-|+|+.|+||||||..+.....+ ....++||.+...++.. .++++|.+... .++..+.+-.+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 479999999999999999999887632 34668999987776653 34455543211 1111222222333
Q ss_pred H-HhcCCeEEEEEeCCCCC
Q 038611 207 M-LKAKAKFVLILDDMWEA 224 (837)
Q Consensus 207 ~-l~~~k~~LlVlDdv~~~ 224 (837)
. +..+..-++|+|-|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 3 33455668899988643
No 406
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.22 E-value=0.078 Score=58.33 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=34.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|| ++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 21 ~i~gr--e~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCc--HHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 56888 66777777766544 567889999999999999999865
No 407
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.21 E-value=0.11 Score=48.82 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--DLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
-.+++|+|..|.|||||++.+.... ......+++...... ...+. ...++.-.. ...-..+...+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHH
Confidence 4799999999999999999998764 123334444321111 11111 111111100 111122333344555
Q ss_pred hcCCeEEEEEeCCCCCcc------ccccccCCCCCCCCcEEEEEeCChhHhhhC
Q 038611 209 KAKAKFVLILDDMWEAFP------LEKVGIPEPNKENGCKLVITTRSYRVCRSM 256 (837)
Q Consensus 209 ~~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~~s~iivTtR~~~v~~~~ 256 (837)
...+-++++|+.-...+ +.++...+. ..+..++++|.+.......
T Consensus 96 -~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 -LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA 146 (157)
T ss_pred -hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 34578889999865432 111111221 2256788888887765543
No 408
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.20 E-value=0.064 Score=53.35 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 489999999999999999998743
No 409
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.20 E-value=0.3 Score=53.47 Aligned_cols=89 Identities=8% Similarity=0.173 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
.-..++|+|..|+|||||++.+++.. .-+.++++-+++... ..++..+.+..-+... ........
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45789999999999999999998764 224556676776543 4455544443322110 11111111
Q ss_pred ---HHHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 200 ---RAGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 200 ---~~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
.+..+.+.+ .+++..|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 112233333 268999999999954
No 410
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.20 E-value=0.078 Score=56.36 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=38.1
Q ss_pred CCccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|-+.+||. ++.+..++-.+.+....-+.|.|..|.|||||++.+..-.
T Consensus 2 pf~~ivgq--~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQ--DEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccH--HHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 44578897 6667677666666666778899999999999999998665
No 411
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.15 Score=49.85 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.++-|.++|++|.|||.||++|+++.
T Consensus 187 dpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 457889999999999999999999975
No 412
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.19 E-value=0.042 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 413
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.18 E-value=0.088 Score=60.79 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=53.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
.+++|. ++.++.|...+... +-+.++|.+|+||||+|+.+.+... ...++..+|..- ...+...+++.++.++
T Consensus 31 ~~vigq--~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQ--EHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHcCCh--HHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 378887 66677776666554 4789999999999999999998752 334677888765 3345666666666555
Q ss_pred c
Q 038611 188 K 188 (837)
Q Consensus 188 ~ 188 (837)
|
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 4
No 414
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.14 E-value=0.29 Score=53.72 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCCC------CCCccHH----
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKESL------PENEDKV---- 198 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~---- 198 (837)
+-.-++|.|.+|+|||+|+.++.+... +.+-+.++|+-+++... ..++.+++...-.... .......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 457899999999999999999988752 22347888998887653 5556666554311110 1111111
Q ss_pred --HHHHHHHHHHh--cCCeEEEEEeCCCC
Q 038611 199 --SRAGRLLGMLK--AKAKFVLILDDMWE 223 (837)
Q Consensus 199 --~~~~~l~~~l~--~~k~~LlVlDdv~~ 223 (837)
..+..+.+.+. +++..|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12223445554 47999999999854
No 415
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.13 E-value=0.039 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 416
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.11 E-value=0.063 Score=52.08 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
.++|.|+|+.|+|||||++++.... ...|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999875 345654444443
No 417
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.11 E-value=0.037 Score=51.68 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 418
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.08 E-value=0.73 Score=54.90 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|+. ..+..+.+.+. .....-|.|+|..|+|||++|+.+++...+. -...+.+++..
T Consensus 377 ~liG~S--~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~~ 437 (686)
T PRK15429 377 EIIGRS--EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCAA 437 (686)
T ss_pred ceeecC--HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEeccc
Confidence 577763 23344333332 1233578899999999999999998764211 22345555554
No 419
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.06 E-value=0.049 Score=54.08 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 124 ENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 124 ~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.+...++++|+++|+.|+|||||.+++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556689999999999999999999998865
No 420
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.05 E-value=0.051 Score=53.80 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE-------eCCCcCHHHH--HHHHHHHhcCCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-------VSQPLDLIKL--QTEIATALKESLP 192 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~-------vs~~~~~~~~--~~~i~~~l~~~~~ 192 (837)
.+..|.++||+|.||||..+.++.+....+.+ ..++-.. ...+.++++. .++..++.+....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 46788999999999999999999887433221 2233221 1223455554 3567777665443
No 421
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.03 E-value=0.08 Score=55.71 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=30.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
+++.+.|-|||||||+|.+.+-...+ . ...+.-|+.....++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~--G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-R--GKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-T--TS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-C--CCCeeEeecCCCccHHH
Confidence 68999999999999999988877633 2 23456665554444333
No 422
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.48 Score=54.06 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+.+.++|++|.|||.||+++++.. ...| +.+... .+ .. .. .......+..+...-.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~f-----i~v~~~----~l----~s----k~--vGesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRF-----ISVKGS----EL----LS----KW--VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeE-----EEeeCH----HH----hc----cc--cchHHHHHHHHHHHHH
Confidence 45789999999999999999999954 2222 222221 11 11 00 1122334444555544
Q ss_pred cCCeEEEEEeCCCCCccc-------------cccccCCCC--CCCCcEEEEEeCChhHhhh---C--Ccce-EEeccCCH
Q 038611 210 AKAKFVLILDDMWEAFPL-------------EKVGIPEPN--KENGCKLVITTRSYRVCRS---M--KCKQ-VEVELLSK 268 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~~-------------~~l~~~~~~--~~~~s~iivTtR~~~v~~~---~--~~~~-~~l~~L~~ 268 (837)
+..+..|.+|.++....+ ..+...+.. ...+..||-||-....... . .... +.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678999999999743221 112222221 1223334445544433221 1 2223 78888999
Q ss_pred HhHHHHHHHHhCCC
Q 038611 269 EEAFNLFIDRVGSS 282 (837)
Q Consensus 269 ~~~~~Lf~~~~~~~ 282 (837)
++..+.|+......
T Consensus 413 ~~r~~i~~~~~~~~ 426 (494)
T COG0464 413 EERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887643
No 423
>PRK06851 hypothetical protein; Provisional
Probab=93.99 E-value=0.55 Score=50.32 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 128 GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 128 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
.+--+++.|.|.+|+|||||+++++.... ...++..++=|.+++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 44568999999999999999999999862 334555454444443
No 424
>PRK13947 shikimate kinase; Provisional
Probab=93.97 E-value=0.045 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 425
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.96 E-value=0.12 Score=58.44 Aligned_cols=127 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC---------------------CcCH-HHHHHHHHHHhcCCC
Q 038611 134 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---------------------PLDL-IKLQTEIATALKESL 191 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---------------------~~~~-~~~~~~i~~~l~~~~ 191 (837)
|+|+|+.|+|||||.+.+........+......-+.++- .++. ..-.+..+..++...
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Q ss_pred CCC------ccHHHHHHHHHHHHhcCCeEEEEEe------CCCCCccccccccCCCCCCCCcEEEEEeCChhHhhhCCcc
Q 038611 192 PEN------EDKVSRAGRLLGMLKAKAKFVLILD------DMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRSMKCK 259 (837)
Q Consensus 192 ~~~------~~~~~~~~~l~~~l~~~k~~LlVlD------dv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~ 259 (837)
... -+-.++..-.+..+.-..+-++||| |+...+.+++....+++ .||+.|.++.........
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G-----tvl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG-----TVLLVSHDRYFLDRVATR 505 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC-----eEEEEeCCHHHHHhhcce
Q ss_pred eEEecc
Q 038611 260 QVEVEL 265 (837)
Q Consensus 260 ~~~l~~ 265 (837)
.+.+.+
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
No 426
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.96 E-value=0.076 Score=54.84 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
.-+++.|+|.+|.|||++|.++.... ...+..++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 45899999999999999999998875 234788999998774
No 427
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.95 E-value=0.11 Score=57.08 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+-|.++|++|+|||++|+.++...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998764
No 428
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.94 E-value=0.043 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998753
No 429
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.94 E-value=0.12 Score=51.74 Aligned_cols=58 Identities=29% Similarity=0.363 Sum_probs=34.1
Q ss_pred HHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHH
Q 038611 121 IIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 179 (837)
Q Consensus 121 ~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~ 179 (837)
++++.+. .++..+|+|.|++|+||+||..++...+. ..++--.++=|.-|.+++--.+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCcc
Confidence 4444443 34678999999999999999999998873 3333333444444555554443
No 430
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.92 E-value=0.097 Score=54.98 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
.+++.+.|.|||||||+|.+.+-... . ....+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA-~--~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA-E--SGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH-H--cCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999776652 2 2244777777776666665543
No 431
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.91 E-value=0.27 Score=46.42 Aligned_cols=117 Identities=18% Similarity=0.067 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEE---EeCCCcCHHHHHHHHH---HHhcCC--CC--CCccH---
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV---TVSQPLDLIKLQTEIA---TALKES--LP--ENEDK--- 197 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv---~vs~~~~~~~~~~~i~---~~l~~~--~~--~~~~~--- 197 (837)
-.+|-|++..|.||||.|..++-.. ..+-..+..+ .-.........+..+. .+.+.. .. .....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 3688889999999999999988765 2232334333 2222234444443320 000111 00 11111
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEeCCCCC-----ccccccccCCCCCCCCcEEEEEeCCh
Q 038611 198 -VSRAGRLLGMLKAKAKFVLILDDMWEA-----FPLEKVGIPEPNKENGCKLVITTRSY 250 (837)
Q Consensus 198 -~~~~~~l~~~l~~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~s~iivTtR~~ 250 (837)
........+.+..+.-=++|||.+-.. -+.+++...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 112222334444566679999998532 22233333333445567899999985
No 432
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.90 E-value=0.088 Score=49.08 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 118 VVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 118 ~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.+++|.+.+.+ ++++++|..|+|||||+..+..+
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 35666677755 89999999999999999988875
No 433
>PRK13949 shikimate kinase; Provisional
Probab=93.89 E-value=0.054 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+-|.|+|+.|.||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 434
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.83 E-value=0.42 Score=52.63 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
.-.-++|.|.+|+|||||+.++...... ++-+.++++-+++.. ...++..++...=.... ........
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999998877522 222567888887755 45566666654321110 11111111
Q ss_pred ---HHHHHHHHH--hcCCeEEEEEeCCCC
Q 038611 200 ---RAGRLLGML--KAKAKFVLILDDMWE 223 (837)
Q Consensus 200 ---~~~~l~~~l--~~~k~~LlVlDdv~~ 223 (837)
....+.+.+ .+++..|+++||+-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 122334444 268999999999854
No 435
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.82 E-value=0.048 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-.+++|+|.+|+|||||++.+.--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 4579999999999999999999864
No 436
>PRK14530 adenylate kinase; Provisional
Probab=93.80 E-value=0.055 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.|.|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998775
No 437
>PRK08149 ATP synthase SpaL; Validated
Probab=93.78 E-value=0.32 Score=53.16 Aligned_cols=89 Identities=13% Similarity=0.260 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCC-------CCCCccH----
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKES-------LPENEDK---- 197 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~---- 197 (837)
+-..++|+|..|+|||||++.+++.. .-+.++...+.... +..++..+........ ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45789999999999999999888753 22344445555433 4555555555532211 1111111
Q ss_pred -HHHHHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 198 -VSRAGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 198 -~~~~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
...+..+.+.+ .+++..|+++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11112233333 268999999999854
No 438
>PRK15453 phosphoribulokinase; Provisional
Probab=93.76 E-value=0.36 Score=49.32 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+..+|+|.|.+|+||||+|+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998765
No 439
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.74 E-value=0.051 Score=50.38 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEIN 152 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~ 152 (837)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 440
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.74 E-value=0.11 Score=53.63 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=39.7
Q ss_pred ccccccch-hHHHHHHHHHhcCCC--CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC
Q 038611 108 ETLVGEKT-KKVVEIIWENLMGDK--APKIGVWGMGGIGKTTIMKEINNRLQKETNKF 162 (837)
Q Consensus 108 ~~~vGr~~-~~~~~~l~~~l~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f 162 (837)
..+||... .++.--|+++..+++ -+.|.|+|++|.|||+||..+.+.+ -..-+|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 37888743 233455667776663 5899999999999999999999987 333344
No 441
>PRK14527 adenylate kinase; Provisional
Probab=93.73 E-value=0.067 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|+|++|.||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998775
No 442
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.72 E-value=0.056 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.72 E-value=0.45 Score=50.34 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.67 E-value=0.06 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
|.|.|.+|+|||||++.+.+..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998873
No 445
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.64 E-value=0.059 Score=50.56 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998775
No 446
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.61 E-value=0.052 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 447
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.57 E-value=0.059 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998864
No 448
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.53 E-value=0.25 Score=51.88 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEI 183 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 183 (837)
+-..++|.|..|+|||+|++++.+.. .-+.++++-+++..+ ..+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 45789999999999999999998853 345788888887643 45555554
No 449
>PTZ00494 tuzin-like protein; Provisional
Probab=93.47 E-value=0.9 Score=48.85 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=91.0
Q ss_pred CCccccccch-hHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 106 PTETLVGEKT-KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 106 ~~~~~vGr~~-~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
..+.+|.|+. |..+.+++..+.-..++++.+.|.-|.||++|.+....+. --..++|.+....| -++.|.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE------~~paV~VDVRg~ED---tLrsVV 439 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE------GVALVHVDVGGTED---TLRSVV 439 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc------CCCeEEEEecCCcc---hHHHHH
Confidence 3447888854 3334455555555678999999999999999999776653 13467888876654 467788
Q ss_pred HHhcCCCCC-CccHHHH---HHHHHHHHhcCCeEEEEEeCCCCCccccccc---cCCCCCCCCcEEEEEeCChhHhhhCC
Q 038611 185 TALKESLPE-NEDKVSR---AGRLLGMLKAKAKFVLILDDMWEAFPLEKVG---IPEPNKENGCKLVITTRSYRVCRSMK 257 (837)
Q Consensus 185 ~~l~~~~~~-~~~~~~~---~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~---~~~~~~~~~s~iivTtR~~~v~~~~~ 257 (837)
++++.+.-+ -.+..+- .....+....++.-+||+- +.+-..+..+. ..+...-.-|.|++---.++......
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhc
Confidence 888865311 1122221 1122222124454444542 22222221110 01112234566776554444322222
Q ss_pred cce----EEeccCCHHhHHHHHHHH
Q 038611 258 CKQ----VEVELLSKEEAFNLFIDR 278 (837)
Q Consensus 258 ~~~----~~l~~L~~~~~~~Lf~~~ 278 (837)
.-+ |.+++++.++|.+.-.+.
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhcc
Confidence 211 889999999999887654
No 450
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.47 E-value=0.57 Score=51.47 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
+-.-++|.|.+|+|||||+.++...... ++-..++++-+++.. ...++..++...=.... ........
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~--~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHh--cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999999877522 223567888887654 35566666643311110 11111111
Q ss_pred ---HHHHHHHHHh--cCCeEEEEEeCCCCC
Q 038611 200 ---RAGRLLGMLK--AKAKFVLILDDMWEA 224 (837)
Q Consensus 200 ---~~~~l~~~l~--~~k~~LlVlDdv~~~ 224 (837)
.+..+.+.+. +++..|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 2223444553 478999999999543
No 451
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.46 E-value=0.19 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 452
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.44 E-value=0.4 Score=52.50 Aligned_cols=89 Identities=11% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCCC------CCCccHHHH--
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKESL------PENEDKVSR-- 200 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~~-- 200 (837)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+++... ..++....+..-+... ........+
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45789999999999999999998864 235678888877643 4444444332211110 111111111
Q ss_pred ----HHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 201 ----AGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 201 ----~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
+..+.+.+ .++++.|+++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233333 268999999999854
No 453
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.43 E-value=0.071 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998864
No 454
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.43 E-value=0.053 Score=51.47 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 455
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.42 E-value=0.19 Score=50.92 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=55.6
Q ss_pred cccccchhHHHHHHHHHh----cCC---CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCcCHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENL----MGD---KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVI-WVTVSQPLDLIKLQ 180 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l----~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~-wv~vs~~~~~~~~~ 180 (837)
.++|. .-.++.|+..+ .+. ++=|++.+|..|.||.-.++.+++..-+..-.-++|- ||..-.-+....+
T Consensus 83 ~lfGQ--Hla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i- 159 (344)
T KOG2170|consen 83 ALFGQ--HLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI- 159 (344)
T ss_pred Hhhch--HHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH-
Confidence 56776 33334444443 333 4679999999999999999999998733222211111 1111111111111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 038611 181 TEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 181 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 224 (837)
.....+...++......-+|-|.|+|+++..
T Consensus 160 -------------e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 160 -------------EDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 0112233334455555678999999999865
No 456
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.41 E-value=0.1 Score=55.37 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=36.3
Q ss_pred CCCccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 105 LPTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 105 ~~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+-..++|. +..++.+.-.+...+..-+.+.|..|.||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq--~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQ--EEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCH--HHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 455578897 5566656544544445568999999999999999998765
No 457
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.40 E-value=0.11 Score=54.63 Aligned_cols=49 Identities=29% Similarity=0.421 Sum_probs=35.9
Q ss_pred Cccccccch-hHHHHHHHHHhcCCC--CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 107 TETLVGEKT-KKVVEIIWENLMGDK--APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 107 ~~~~vGr~~-~~~~~~l~~~l~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+||+.. .++..-+++++.+++ -+.|.|.|++|.|||+||..+++.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 347999743 344556677777765 5899999999999999999999987
No 458
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.39 E-value=0.062 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997653
No 459
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.38 E-value=0.079 Score=50.75 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|+|+.|.||||+|+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999875
No 460
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.35 E-value=0.078 Score=48.70 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998776654
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.35 E-value=0.59 Score=53.51 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
..++.|.|.+|+|||++|.++..... .....++|++....
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~ 312 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAAC---RRGERCLLFAFEES 312 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC
Confidence 57999999999999999999987652 23467899987654
No 462
>PRK13695 putative NTPase; Provisional
Probab=93.30 E-value=0.12 Score=49.60 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=25.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEE
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 168 (837)
.|+|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~--~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE--EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 3789999999999999999987632 234444454
No 463
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.28 E-value=0.072 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 464
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.25 E-value=0.068 Score=45.99 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEIN 152 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~ 152 (837)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999875
No 465
>PRK13975 thymidylate kinase; Provisional
Probab=93.22 E-value=0.077 Score=52.17 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999887
No 466
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.21 E-value=0.09 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|++|+|+.|.|||||..++....
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999999887
No 467
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.19 E-value=0.1 Score=62.10 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=87.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH-HhhcCCCCeEEEEEeCCC--cC-HHHHH------HHHHHHhcCCCCCCccHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL-QKETNKFNVVIWVTVSQP--LD-LIKLQ------TEIATALKESLPENEDKVSR 200 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~-~~~~~~f~~~~wv~vs~~--~~-~~~~~------~~i~~~l~~~~~~~~~~~~~ 200 (837)
..++.|+|+.|.||||+.+.+.... ....+ ++|.+... .. ..++. +.+...+ +.-......
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~L----StfS~~m~~ 392 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----IPIPANEHSEIPYFEEIFADIGDEQSIEQNL----STFSGHMKN 392 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----CCccCCccccccchhheeeecChHhHHhhhh----hHHHHHHHH
Confidence 4799999999999999999997652 11111 11211110 00 00110 1111111 001111222
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCCccc---ccc----ccCCCCCCCCcEEEEEeCChhHhhhCCcce-E---EeccCCHH
Q 038611 201 AGRLLGMLKAKAKFVLILDDMWEAFPL---EKV----GIPEPNKENGCKLVITTRSYRVCRSMKCKQ-V---EVELLSKE 269 (837)
Q Consensus 201 ~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~l----~~~~~~~~~~s~iivTtR~~~v~~~~~~~~-~---~l~~L~~~ 269 (837)
...+...+ ..+-|+++|.+-...+. ..+ ...+. ..|+.+|+||...++........ + .+. ++.+
T Consensus 393 ~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~ 467 (771)
T TIGR01069 393 ISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE 467 (771)
T ss_pred HHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC
Confidence 22333322 46899999998754321 111 11221 35789999999988754332211 1 221 1111
Q ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHHh
Q 038611 270 EAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRG 333 (837)
Q Consensus 270 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~ 333 (837)
...-.++-..|. + -..-|-.|++++ |+|-.+.--|..+... ....+..+++++..
T Consensus 468 ~l~p~Ykl~~G~---~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~ 522 (771)
T TIGR01069 468 TLSPTYKLLKGI---P----GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSA 522 (771)
T ss_pred CCceEEEECCCC---C----CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 100000000111 1 133577777777 8888888888777553 23456666665543
No 468
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.19 E-value=0.32 Score=47.21 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=24.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|.|.|.+|.||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 469
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.18 E-value=0.27 Score=53.73 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhh-cCCCC---------eEEEEEeCCCcCHHHHHHHHHHHhc-CCC------C
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKE-TNKFN---------VVIWVTVSQPLDLIKLQTEIATALK-ESL------P 192 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~------~ 192 (837)
.-.-++|.|-+|+|||||+.++.+..... ....| .++++-+++.....+.+...+..-+ ... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 45789999999999999999998875200 00012 5677778887666665555555443 111 1
Q ss_pred CCccHHH------HHHHHHHHHh--cCCeEEEEEeCCCC
Q 038611 193 ENEDKVS------RAGRLLGMLK--AKAKFVLILDDMWE 223 (837)
Q Consensus 193 ~~~~~~~------~~~~l~~~l~--~~k~~LlVlDdv~~ 223 (837)
....... .+..+.+.+. +++..|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 1223445554 57999999999854
No 470
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.16 E-value=0.21 Score=54.21 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 117 KVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 117 ~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+.+++.+.......+.|.|.||.|||+|.+++.+..
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 445666677766778899999999999999999999887
No 471
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.16 E-value=0.16 Score=49.54 Aligned_cols=125 Identities=19% Similarity=0.176 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeC----CCc-----CHHH----HHHHHHH
Q 038611 119 VEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS----QPL-----DLIK----LQTEIAT 185 (837)
Q Consensus 119 ~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs----~~~-----~~~~----~~~~i~~ 185 (837)
....++.+. +..++.+.|++|.|||.||.+.+-+. -..+.++.++++.-. +.. +..+ ...-+..
T Consensus 9 Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 9 QKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp HHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred HHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 344455555 56799999999999999999998776 344788888887521 111 1111 1222222
Q ss_pred HhcCCCCCCccHHHHHHHH-----HHHHhcCC---eEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCCh
Q 038611 186 ALKESLPENEDKVSRAGRL-----LGMLKAKA---KFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRSY 250 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l-----~~~l~~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~~ 250 (837)
.+..-.. ..........- --.+.+|+ ..+||+|++.+. .++..+... .+.+||||++--..
T Consensus 86 ~l~~~~~-~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 86 ALEELFG-KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHhC-hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 3322111 11111111000 00011332 468999999875 355555443 37899999987654
No 472
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.15 E-value=0.55 Score=49.54 Aligned_cols=89 Identities=13% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
....++|+|..|.|||||++.+.+.. .-+..+..-++. ..+..++.......-+... ........
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-----~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-----TADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45789999999999999999888754 123444455553 3345555555544322110 11111111
Q ss_pred ---HHHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 200 ---RAGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 200 ---~~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
....+.+.+ .+++..|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111222333 268899999999854
No 473
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.15 E-value=0.14 Score=57.87 Aligned_cols=49 Identities=33% Similarity=0.411 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcC-----CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 038611 116 KKVVEIIWENLMG-----DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 169 (837)
Q Consensus 116 ~~~~~~l~~~l~~-----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~ 169 (837)
.+.++++..|+.. ...+++.+.|++|+||||.++.+++.. .|+.+-|.+
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4556777777753 235799999999999999999999876 477788875
No 474
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.15 E-value=0.083 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|++|+|+.|+|||||+.++....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 475
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.13 E-value=0.16 Score=52.81 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=30.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
++|+|.|-||+||||+|..++..... ....++-|......+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~---~G~kVlliD~Dpq~n 42 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE---MGKKVMIVGCDPKAD 42 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh---CCCeEEEEEcCCCCC
Confidence 67888999999999999999988732 223566676655444
No 476
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.12 E-value=0.68 Score=47.16 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
-.++.|.|.+|+|||++|.+++.+... .+-..++|++... +..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~--~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAK--KQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCceEEEeCCC--CHHHHHHHHH
Confidence 369999999999999999998877522 2235678887665 3445555554
No 477
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.09 E-value=0.23 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..|+|.|..|+||||+|+.+++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 478
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.06 E-value=0.35 Score=53.45 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC--CeEEEEEeCCCc-CHHHHHHHHHHHhcCCC-------CCCccH--
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKF--NVVIWVTVSQPL-DLIKLQTEIATALKESL-------PENEDK-- 197 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~-- 197 (837)
.-.-++|.|..|+|||||+.++.+... ..+.+ ..++++-+++.. ...++..++...=.... .+....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~-ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQAT-VRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhc-ccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 347889999999999999999988642 11111 156777777654 45556666553321110 111111
Q ss_pred ---HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 038611 198 ---VSRAGRLLGMLK--AKAKFVLILDDMWE 223 (837)
Q Consensus 198 ---~~~~~~l~~~l~--~~k~~LlVlDdv~~ 223 (837)
......+.+.+. ++++.|+++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 112223455554 58899999999854
No 479
>PRK05922 type III secretion system ATPase; Validated
Probab=93.06 E-value=0.58 Score=51.24 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
....++|+|..|+|||||++.+.+.. ..+...++-+++.. .......+......... ........
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45789999999999999999998753 22344444444432 33444444443332211 11111111
Q ss_pred ---HHHHHHHHH-hcCCeEEEEEeCCCCC
Q 038611 200 ---RAGRLLGML-KAKAKFVLILDDMWEA 224 (837)
Q Consensus 200 ---~~~~l~~~l-~~~k~~LlVlDdv~~~ 224 (837)
.+..+.+.+ .+++..|+++||+-..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112233333 2689999999999543
No 480
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.05 E-value=0.14 Score=53.30 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=27.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
+.|+|+|-||+||||+|..++..... .+ ..++-|....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~-~G--~~VlliD~D~ 38 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE-MG--KKVMIVGCDP 38 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH-CC--CeEEEEeCCC
Confidence 46899999999999999999988743 22 2355554443
No 481
>PRK13768 GTPase; Provisional
Probab=93.04 E-value=0.14 Score=52.54 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=26.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
.++.|.|.||+||||++..+...... ....++.|+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~---~g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE---QGYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh---cCCceEEEEC
Confidence 57899999999999999999887632 2234555543
No 482
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.03 E-value=0.28 Score=56.84 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=46.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
.+++|. ++.++.+...+... +-+.++|++|+||||+|+.+.+... ...|...+++.-+ ..+...+++.++.++
T Consensus 18 ~~viG~--~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQ--EEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCH--HHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhh
Confidence 377887 55566565555554 3555999999999999999998762 2233434433322 223444566666555
Q ss_pred c
Q 038611 188 K 188 (837)
Q Consensus 188 ~ 188 (837)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 483
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.31 Score=49.80 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=23.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
++|.++|++|.|||+|.++++++..
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhe
Confidence 8999999999999999999999984
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.99 E-value=0.43 Score=54.02 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
.-+++.|.|.+|.||||||.++...-. ...-..++||+..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~--~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGI--IHFDEPGVFVTFEES 61 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEEEEecC
Confidence 458999999999999999999865421 122356889988643
No 485
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.98 E-value=1.7 Score=45.01 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 119 VEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 119 ~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-+.+...+..+. .+.+.++|+.|+||+++|..++...
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 456667777665 4788899999999999999998765
No 486
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.97 E-value=0.65 Score=47.73 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
+..+++++|.+|+||||+++.+...... .-..+.+++..... ....-++..++.++.+.....+.. .+...++.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~-~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA-AMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHH-HHHHHHHHH
Confidence 4589999999999999999999877622 12346666654322 122222334444443322222222 223333334
Q ss_pred hc-CCeEEEEEeCCCC
Q 038611 209 KA-KAKFVLILDDMWE 223 (837)
Q Consensus 209 ~~-~k~~LlVlDdv~~ 223 (837)
.. .+.=++++|..-.
T Consensus 150 ~~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 150 KEEARVDYILIDTAGK 165 (270)
T ss_pred HhcCCCCEEEEECCCC
Confidence 22 2456778888754
No 487
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.97 E-value=0.1 Score=49.70 Aligned_cols=25 Identities=44% Similarity=0.587 Sum_probs=22.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
+.|.+.|.+|+||||+|++++...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 5688999999999999999998873
No 488
>PRK14529 adenylate kinase; Provisional
Probab=92.95 E-value=0.34 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~ 155 (837)
|.|.|++|+||||+|+.++..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 489
>PLN02796 D-glycerate 3-kinase
Probab=92.92 E-value=0.64 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+-+|+|.|..|+||||||+.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.92 E-value=0.089 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 568899999999999999998754
No 491
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.90 E-value=0.086 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~ 154 (837)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999864
No 492
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.90 E-value=0.59 Score=46.97 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
...++.|.|.+|+|||++|.+++.... ..-..++|++....
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~---~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL---KNGEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCC
Confidence 357999999999999999999887641 22456888887664
No 493
>PRK13948 shikimate kinase; Provisional
Probab=92.90 E-value=0.097 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45889999999999999999999875
No 494
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.89 E-value=0.084 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-..|+|+|++|+|||||.+.++--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999854
No 495
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.88 E-value=0.26 Score=49.82 Aligned_cols=35 Identities=31% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 119 VEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 119 ~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.+...+.... +..|+|++|.||||++..+....
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344444444333 78999999999998777776654
No 496
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.88 E-value=0.14 Score=53.50 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=28.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
++|+|+|-||+||||+|..++....+ ....+.-|....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~---~G~rVLliD~Dp 39 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE---SGKKVLVVGCDP 39 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh---CCCEEEEEeeCC
Confidence 68999999999999999999988732 222455554433
No 497
>PRK13946 shikimate kinase; Provisional
Probab=92.88 E-value=0.09 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.|.++|+.|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999876
No 498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.87 E-value=0.4 Score=52.42 Aligned_cols=89 Identities=13% Similarity=0.287 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCC------CCCccHHH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESL------PENEDKVS--- 199 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~--- 199 (837)
.-..++|+|..|+|||||++.+.... .. +..+.+.+++ .....++....+..-+... ........
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 34789999999999999999888653 11 2333333443 3334445554433322110 11111111
Q ss_pred ---HHHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 200 ---RAGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 200 ---~~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
.+..+.+.+ .+++..|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233333 257899999999854
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.87 E-value=0.094 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
..++.|.|++|+|||||++++..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999876
No 500
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.7 Score=52.82 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=30.0
Q ss_pred EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 261 VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
+.+..+++++-.++|+-......-. -..-.+.++++|.|.-++
T Consensus 558 i~~~~lse~qRl~iLq~y~~~~~~n----~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 558 IEVPALSEEQRLEILQWYLNHLPLN----QDVNLKQLARKTSGFSFG 600 (953)
T ss_pred ccCCCCCHHHHHHHHHHHHhccccc----hHHHHHHHHHhcCCCCHH
Confidence 7899999999999998776554211 122356777888776544
Done!