Query 038611
Match_columns 837
No_of_seqs 504 out of 5312
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1E-45 3.4E-50 423.8 26.5 310 111-445 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 8.7E-39 3E-43 368.0 18.9 284 109-437 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-37 1.2E-41 391.7 27.9 312 105-444 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.4E-34 1.2E-38 333.6 26.6 308 106-442 122-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 4.1E-22 1.4E-26 232.9 22.9 158 450-610 18-179 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 5.4E-22 1.8E-26 230.3 20.8 161 451-615 15-184 (570)
7 4ecn_A Leucine-rich repeat pro 99.9 2E-22 6.7E-27 239.6 16.3 322 486-837 444-833 (876)
8 3v47_A TOLL-like receptor 5B a 99.9 9.6E-22 3.3E-26 221.3 20.6 192 451-647 18-225 (455)
9 4ecn_A Leucine-rich repeat pro 99.9 6.2E-22 2.1E-26 235.3 19.9 329 458-817 440-839 (876)
10 4fmz_A Internalin; leucine ric 99.9 3.9E-21 1.3E-25 208.0 23.9 141 466-615 66-206 (347)
11 4eco_A Uncharacterized protein 99.9 3.1E-22 1.1E-26 234.0 13.5 315 486-837 202-593 (636)
12 2id5_A Lingo-1, leucine rich r 99.9 1.4E-21 4.7E-26 221.3 18.0 305 453-816 21-331 (477)
13 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-21 8.9E-26 223.3 19.9 193 452-649 14-211 (549)
14 3t6q_A CD180 antigen; protein- 99.9 2.4E-21 8.3E-26 226.4 19.8 161 451-615 20-186 (606)
15 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 9.9E-26 212.5 18.6 299 466-816 45-350 (390)
16 2id5_A Lingo-1, leucine rich r 99.9 9.7E-21 3.3E-25 214.4 22.4 308 468-836 13-325 (477)
17 4eco_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 224.7 18.5 319 458-817 239-599 (636)
18 3oja_B Anopheles plasmodium-re 99.9 7.6E-21 2.6E-25 221.0 19.5 298 467-816 52-356 (597)
19 2z7x_B TOLL-like receptor 1, v 99.9 9.3E-21 3.2E-25 217.0 19.9 138 452-596 9-150 (520)
20 3rgz_A Protein brassinosteroid 99.9 5.1E-21 1.7E-25 229.1 18.0 176 466-647 200-381 (768)
21 3vq2_A TLR4, TOLL-like recepto 99.8 1.9E-20 6.5E-25 218.8 22.0 175 468-649 13-196 (606)
22 3j0a_A TOLL-like receptor 5; m 99.8 1.5E-20 5E-25 227.5 20.6 330 450-815 11-372 (844)
23 1o6v_A Internalin A; bacterial 99.8 3.6E-20 1.2E-24 208.7 22.0 172 463-649 65-236 (466)
24 3rgz_A Protein brassinosteroid 99.8 5.8E-21 2E-25 228.6 15.5 180 466-647 294-479 (768)
25 3o6n_A APL1; leucine-rich repe 99.8 1.2E-20 4.2E-25 207.5 16.4 296 488-836 43-344 (390)
26 3t6q_A CD180 antigen; protein- 99.8 5.5E-20 1.9E-24 214.9 22.0 180 465-648 128-364 (606)
27 1o6v_A Internalin A; bacterial 99.8 6E-20 2E-24 206.9 20.1 321 465-836 45-380 (466)
28 1ziw_A TOLL-like receptor 3; i 99.8 5.9E-20 2E-24 217.7 20.9 188 451-644 12-205 (680)
29 4fmz_A Internalin; leucine ric 99.8 1E-19 3.6E-24 196.8 20.7 298 464-837 42-339 (347)
30 3oja_B Anopheles plasmodium-re 99.8 1.9E-20 6.4E-25 217.6 15.8 296 488-836 49-350 (597)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-19 7.4E-24 207.5 24.2 139 450-596 38-181 (562)
32 4fcg_A Uncharacterized protein 99.8 1.3E-20 4.4E-25 201.5 12.8 220 466-774 81-310 (328)
33 2z81_A CD282 antigen, TOLL-lik 99.8 2.8E-20 9.6E-25 214.7 15.9 123 462-585 46-173 (549)
34 2z63_A TOLL-like receptor 4, v 99.8 5.7E-20 1.9E-24 213.2 18.1 135 464-599 50-192 (570)
35 2z7x_B TOLL-like receptor 1, v 99.8 3.1E-19 1.1E-23 204.4 22.3 138 469-615 3-145 (520)
36 4fcg_A Uncharacterized protein 99.8 4.5E-20 1.6E-24 197.2 14.1 220 515-814 81-310 (328)
37 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-19 5.2E-24 202.0 17.7 165 465-649 41-206 (457)
38 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-19 1.2E-23 210.9 21.9 160 455-615 37-202 (680)
39 1xku_A Decorin; proteoglycan, 99.8 7.1E-19 2.4E-23 188.6 20.9 172 466-646 52-228 (330)
40 3v47_A TOLL-like receptor 5B a 99.8 2.5E-19 8.5E-24 201.6 17.9 342 468-836 12-400 (455)
41 4g8a_A TOLL-like receptor 4; l 99.8 5.5E-19 1.9E-23 207.7 21.0 148 451-602 39-191 (635)
42 2z80_A TOLL-like receptor 2, v 99.8 3.3E-19 1.1E-23 193.2 17.4 266 452-779 40-315 (353)
43 2ft3_A Biglycan; proteoglycan, 99.8 5.5E-19 1.9E-23 189.7 17.6 168 467-647 34-206 (332)
44 1ogq_A PGIP-2, polygalacturona 99.8 4.7E-20 1.6E-24 195.9 9.0 68 736-823 242-309 (313)
45 2z80_A TOLL-like receptor 2, v 99.8 4.4E-19 1.5E-23 192.1 16.0 270 470-817 35-313 (353)
46 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-19 1.4E-23 190.6 14.6 269 491-818 34-307 (332)
47 1ogq_A PGIP-2, polygalacturona 99.8 2E-19 6.9E-24 191.0 11.6 248 466-780 50-306 (313)
48 1xku_A Decorin; proteoglycan, 99.8 2.6E-18 9E-23 184.2 19.7 269 467-817 32-305 (330)
49 3bz5_A Internalin-J, INLJ; leu 99.8 1.5E-18 5.3E-23 193.8 17.8 283 455-775 54-349 (457)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.6E-18 1.9E-22 195.7 21.5 140 467-615 32-176 (562)
51 3j0a_A TOLL-like receptor 5; m 99.8 2.2E-18 7.6E-23 208.4 18.5 64 584-649 266-329 (844)
52 3g06_A SSPH2 (leucine-rich rep 99.8 8.1E-18 2.8E-22 193.6 20.5 154 468-648 42-195 (622)
53 3zyi_A Leucine-rich repeat-con 99.8 2.7E-18 9.1E-23 192.6 14.8 242 467-776 55-301 (452)
54 2z66_A Variable lymphocyte rec 99.8 2.4E-18 8.2E-23 182.4 13.5 172 469-647 10-188 (306)
55 1jl5_A Outer protein YOPM; leu 99.7 2.4E-17 8.1E-22 184.0 20.1 161 466-648 91-251 (454)
56 3o53_A Protein LRIM1, AGAP0063 99.7 1.8E-19 6.2E-24 191.9 2.5 263 472-823 16-280 (317)
57 1ozn_A Reticulon 4 receptor; N 99.7 4.7E-18 1.6E-22 178.1 13.0 170 470-645 15-188 (285)
58 1ozn_A Reticulon 4 receptor; N 99.7 6.7E-18 2.3E-22 176.9 13.9 193 451-648 19-215 (285)
59 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 184.9 17.6 184 453-644 53-241 (440)
60 2z66_A Variable lymphocyte rec 99.7 4.9E-18 1.7E-22 180.0 12.0 241 493-816 10-259 (306)
61 3zyj_A Leucine-rich repeat-con 99.7 1.8E-17 6.3E-22 185.1 17.1 242 467-776 44-290 (440)
62 3zyi_A Leucine-rich repeat-con 99.7 2.2E-17 7.6E-22 185.1 17.2 190 451-648 62-256 (452)
63 1jl5_A Outer protein YOPM; leu 99.7 7.9E-17 2.7E-21 179.8 19.0 260 466-780 111-371 (454)
64 4g8a_A TOLL-like receptor 4; l 99.7 9.5E-17 3.3E-21 188.6 20.6 143 470-617 35-182 (635)
65 2o6q_A Variable lymphocyte rec 99.7 9.5E-17 3.2E-21 166.6 16.5 190 451-646 24-217 (270)
66 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.2E-22 185.9 7.6 219 487-778 31-250 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.7 8.3E-17 2.8E-21 171.3 10.5 239 491-818 11-250 (317)
68 1wwl_A Monocyte differentiatio 99.7 1.4E-17 4.8E-22 176.8 4.3 247 487-816 40-307 (312)
69 1p9a_G Platelet glycoprotein I 99.7 3.5E-16 1.2E-20 163.8 14.8 177 466-650 10-188 (290)
70 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-15 5.4E-20 174.5 20.9 251 451-779 48-298 (622)
71 2o6q_A Variable lymphocyte rec 99.7 8.1E-16 2.8E-20 159.6 15.5 175 467-648 17-195 (270)
72 2qen_A Walker-type ATPase; unk 99.6 5.7E-15 1.9E-19 159.6 21.5 293 106-438 10-349 (350)
73 2z62_A TOLL-like receptor 4, v 99.6 2.1E-15 7.1E-20 157.1 16.0 136 474-615 15-156 (276)
74 2z62_A TOLL-like receptor 4, v 99.6 6.4E-16 2.2E-20 161.0 11.7 159 453-615 17-184 (276)
75 3m19_A Variable lymphocyte rec 99.6 1.8E-15 6.1E-20 155.1 14.6 158 454-615 25-186 (251)
76 3ogk_B Coronatine-insensitive 99.6 4.5E-16 1.5E-20 181.2 11.2 339 465-833 163-540 (592)
77 1h6u_A Internalin H; cell adhe 99.6 3.1E-15 1.1E-19 158.2 16.6 171 465-649 40-210 (308)
78 1p9a_G Platelet glycoprotein I 99.6 1.3E-15 4.5E-20 159.4 13.1 187 452-647 19-208 (290)
79 3oja_A Leucine-rich immune mol 99.6 1E-16 3.5E-21 180.7 3.9 171 466-649 34-206 (487)
80 3m19_A Variable lymphocyte rec 99.6 8.6E-15 2.9E-19 150.0 17.7 175 467-648 15-193 (251)
81 2xwt_C Thyrotropin receptor; s 99.6 8.2E-16 2.8E-20 156.4 9.4 191 455-650 23-221 (239)
82 2fna_A Conserved hypothetical 99.6 5.8E-14 2E-18 152.1 23.9 289 106-437 11-356 (357)
83 3rfs_A Internalin B, repeat mo 99.6 6.2E-15 2.1E-19 153.0 14.3 174 465-646 40-217 (272)
84 1h6u_A Internalin H; cell adhe 99.6 1E-14 3.4E-19 154.3 15.7 182 454-650 52-233 (308)
85 1z7x_W Ribonuclease inhibitor; 99.6 1.5E-16 5.3E-21 179.0 1.7 33 516-548 86-123 (461)
86 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-16 5.8E-21 178.7 1.4 198 466-669 3-237 (461)
87 4ay9_X Follicle-stimulating ho 99.6 2.3E-15 7.8E-20 162.5 9.9 237 469-774 12-255 (350)
88 1wwl_A Monocyte differentiatio 99.6 5.2E-16 1.8E-20 164.7 4.5 240 466-776 43-307 (312)
89 2ast_B S-phase kinase-associat 99.6 2.7E-15 9.3E-20 161.2 9.9 123 490-615 70-202 (336)
90 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.6E-19 151.2 14.5 170 465-648 45-214 (291)
91 4ay9_X Follicle-stimulating ho 99.6 1.1E-14 3.8E-19 157.0 13.0 194 451-649 17-217 (350)
92 1w5s_A Origin recognition comp 99.6 4.6E-14 1.6E-18 156.2 18.0 291 108-421 22-371 (412)
93 2xwt_C Thyrotropin receptor; s 99.6 4.4E-15 1.5E-19 151.0 9.0 183 454-643 42-235 (239)
94 3e6j_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 141.7 15.8 145 468-617 21-168 (229)
95 2ast_B S-phase kinase-associat 99.5 1.4E-14 4.9E-19 155.5 12.3 220 491-775 48-282 (336)
96 2v9t_B SLIT homolog 2 protein 99.5 6.8E-14 2.3E-18 139.9 15.1 144 469-617 14-161 (220)
97 3rfs_A Internalin B, repeat mo 99.5 1E-13 3.4E-18 143.8 15.9 151 463-617 60-214 (272)
98 2ca6_A RAN GTPase-activating p 99.5 5.4E-15 1.9E-19 162.0 6.6 234 487-776 29-314 (386)
99 2p1m_B Transport inhibitor res 99.5 1.4E-14 4.8E-19 168.6 9.0 173 465-642 155-346 (594)
100 4ezg_A Putative uncharacterize 99.5 8.2E-14 2.8E-18 136.8 12.9 144 465-616 43-189 (197)
101 2v70_A SLIT-2, SLIT homolog 2 99.5 1.6E-13 5.4E-18 137.2 15.2 146 468-618 13-163 (220)
102 2ca6_A RAN GTPase-activating p 99.5 9.2E-15 3.2E-19 160.2 6.4 264 458-776 24-341 (386)
103 1m9s_A Internalin B; cell inva 99.5 5.7E-14 2E-18 161.4 12.3 170 465-648 42-211 (605)
104 3ogk_B Coronatine-insensitive 99.5 5.8E-14 2E-18 163.3 12.3 340 467-836 139-518 (592)
105 2xot_A Amphoterin-induced prot 99.5 1.2E-13 4.1E-18 149.6 13.6 171 469-646 21-201 (361)
106 2xot_A Amphoterin-induced prot 99.5 8.9E-14 3E-18 150.6 12.0 163 451-617 26-198 (361)
107 3goz_A Leucine-rich repeat-con 99.5 1.2E-13 4.2E-18 149.6 12.9 174 472-647 4-209 (362)
108 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.2E-18 146.3 7.2 167 467-648 20-186 (263)
109 3e6j_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 134.9 15.0 143 451-597 27-172 (229)
110 2o6s_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 137.1 10.4 144 469-617 10-157 (208)
111 2o6s_A Variable lymphocyte rec 99.5 6.8E-13 2.3E-17 131.5 15.9 152 453-615 17-172 (208)
112 2v9t_B SLIT homolog 2 protein 99.5 4.6E-13 1.6E-17 133.8 13.9 143 451-597 19-165 (220)
113 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.8E-18 135.2 9.9 151 487-647 41-194 (197)
114 3goz_A Leucine-rich repeat-con 99.5 5.5E-14 1.9E-18 152.4 7.5 182 464-648 20-239 (362)
115 2p1m_B Transport inhibitor res 99.4 2.3E-14 7.7E-19 166.9 4.6 125 488-615 103-242 (594)
116 1h6t_A Internalin B; cell adhe 99.4 8.4E-13 2.9E-17 138.1 15.7 152 454-616 57-208 (291)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 8.6E-13 2.9E-17 131.8 13.7 143 452-597 20-166 (220)
118 1xeu_A Internalin C; cellular 99.4 1.3E-12 4.4E-17 134.5 14.4 142 464-616 39-180 (263)
119 3cvr_A Invasion plasmid antige 99.4 1E-12 3.4E-17 149.3 13.9 128 467-615 60-187 (571)
120 4glp_A Monocyte differentiatio 99.4 2.6E-13 8.9E-18 143.7 8.5 146 468-615 93-258 (310)
121 1m9s_A Internalin B; cell inva 99.4 9E-13 3.1E-17 151.4 11.8 155 455-621 55-209 (605)
122 2ell_A Acidic leucine-rich nuc 99.4 2.2E-12 7.4E-17 123.0 10.5 132 466-602 24-165 (168)
123 4b8c_D Glucose-repressible alc 99.3 9.3E-13 3.2E-17 155.3 9.4 159 466-629 173-336 (727)
124 2ell_A Acidic leucine-rich nuc 99.3 1.3E-12 4.4E-17 124.7 8.5 123 490-615 24-154 (168)
125 3cvr_A Invasion plasmid antige 99.3 3.9E-12 1.3E-16 144.5 13.8 168 454-648 70-244 (571)
126 4glp_A Monocyte differentiatio 99.3 1.8E-12 6.3E-17 137.1 10.2 176 463-647 114-307 (310)
127 2je0_A Acidic leucine-rich nuc 99.3 9.8E-13 3.3E-17 122.7 7.0 123 490-615 17-147 (149)
128 2v1u_A Cell division control p 99.3 9.7E-11 3.3E-15 128.1 23.2 289 108-421 19-351 (387)
129 2qby_B CDC6 homolog 3, cell di 99.3 1.6E-10 5.6E-15 126.2 23.8 286 108-421 20-339 (384)
130 1fnn_A CDC6P, cell division co 99.3 2.5E-10 8.5E-15 125.0 25.2 290 108-422 17-352 (389)
131 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 120.5 12.9 119 493-616 13-134 (193)
132 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.9E-16 120.0 12.4 122 469-595 11-137 (192)
133 1a9n_A U2A', U2A'; complex (nu 99.3 5.8E-12 2E-16 121.0 8.1 125 487-615 16-147 (176)
134 2wfh_A SLIT homolog 2 protein 99.3 3.4E-11 1.2E-15 117.3 13.4 123 469-597 13-139 (193)
135 1w8a_A SLIT protein; signaling 99.3 1.9E-11 6.5E-16 119.2 11.5 121 493-617 11-135 (192)
136 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 114.9 9.2 123 466-593 17-149 (149)
137 1dce_A Protein (RAB geranylger 99.2 2.1E-11 7.2E-16 139.2 12.2 121 491-615 442-567 (567)
138 2qby_A CDC6 homolog 1, cell di 99.2 1.5E-10 5E-15 126.6 18.5 289 108-421 20-348 (386)
139 2o6r_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 113.7 13.3 99 516-615 29-131 (177)
140 4b8c_D Glucose-repressible alc 99.2 1.3E-11 4.4E-16 145.6 9.4 115 482-599 216-331 (727)
141 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.4E-16 117.5 8.7 134 511-648 15-154 (176)
142 2o6r_A Variable lymphocyte rec 99.2 2.2E-10 7.4E-15 110.1 12.8 125 468-597 9-137 (177)
143 1njg_A DNA polymerase III subu 99.1 4.6E-10 1.6E-14 114.1 14.8 194 108-314 23-230 (250)
144 2chg_A Replication factor C sm 99.1 6.1E-10 2.1E-14 111.4 15.5 183 108-312 17-204 (226)
145 1ds9_A Outer arm dynein; leuci 99.1 8E-13 2.7E-17 129.8 -6.7 132 503-640 37-180 (198)
146 1ds9_A Outer arm dynein; leuci 99.1 2.4E-12 8.3E-17 126.4 -4.6 143 468-615 25-181 (198)
147 1dce_A Protein (RAB geranylger 99.1 2.8E-10 9.7E-15 129.9 11.7 119 467-591 442-567 (567)
148 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 103.9 10.6 95 518-615 15-112 (174)
149 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.4E-14 103.1 10.7 96 517-615 11-109 (170)
150 2r9u_A Variable lymphocyte rec 99.0 1.7E-09 5.7E-14 103.3 10.2 104 493-601 15-122 (174)
151 3qfl_A MLA10; coiled-coil, (CC 98.9 1.3E-09 4.4E-14 94.8 6.6 59 2-60 22-80 (115)
152 3g39_A Variable lymphocyte rec 98.9 6.2E-09 2.1E-13 98.9 11.3 103 492-599 11-117 (170)
153 1sxj_B Activator 1 37 kDa subu 98.9 9.3E-09 3.2E-13 109.2 13.5 182 108-310 21-207 (323)
154 1hqc_A RUVB; extended AAA-ATPa 98.9 2.3E-08 8E-13 106.1 15.2 174 107-315 11-214 (324)
155 3sb4_A Hypothetical leucine ri 98.8 2.2E-09 7.7E-14 114.3 6.8 164 480-649 83-312 (329)
156 3te6_A Regulatory protein SIR3 98.8 1.3E-07 4.5E-12 98.0 16.2 169 109-279 21-211 (318)
157 3sb4_A Hypothetical leucine ri 98.8 1.9E-08 6.4E-13 107.1 10.2 145 466-615 101-304 (329)
158 1iqp_A RFCS; clamp loader, ext 98.7 2.4E-08 8.1E-13 106.2 10.7 185 108-314 25-214 (327)
159 2ifg_A High affinity nerve gro 98.7 3.7E-08 1.3E-12 105.7 10.0 93 521-615 14-110 (347)
160 2chq_A Replication factor C sm 98.6 3.2E-07 1.1E-11 97.0 13.9 181 107-312 16-204 (319)
161 4fdw_A Leucine rich hypothetic 98.6 2.1E-07 7E-12 101.4 12.5 164 468-644 115-281 (401)
162 2ifg_A High affinity nerve gro 98.6 9.4E-08 3.2E-12 102.5 9.6 101 470-574 12-116 (347)
163 3un9_A NLR family member X1; l 98.5 1.9E-08 6.6E-13 108.4 2.8 162 466-630 72-260 (372)
164 3un9_A NLR family member X1; l 98.5 7.4E-09 2.5E-13 111.7 -0.8 154 490-648 72-253 (372)
165 1jr3_A DNA polymerase III subu 98.5 7.2E-07 2.5E-11 96.6 12.9 191 108-312 16-221 (373)
166 1jbk_A CLPB protein; beta barr 98.5 4.5E-07 1.5E-11 87.8 10.1 151 108-275 22-194 (195)
167 1sxj_D Activator 1 41 kDa subu 98.4 1.8E-06 6.3E-11 92.6 13.3 192 108-312 37-235 (353)
168 3bos_A Putative DNA replicatio 98.4 1.9E-07 6.6E-12 94.2 5.0 174 108-313 28-218 (242)
169 2z4s_A Chromosomal replication 98.3 3E-06 1E-10 93.3 12.9 183 109-311 106-305 (440)
170 4fdw_A Leucine rich hypothetic 98.3 3E-06 1E-10 92.2 11.3 140 468-615 159-307 (401)
171 3h4m_A Proteasome-activating n 98.2 9.9E-06 3.4E-10 83.9 14.4 177 106-310 15-229 (285)
172 1d2n_A N-ethylmaleimide-sensit 98.2 3.3E-05 1.1E-09 79.2 17.7 176 128-333 61-263 (272)
173 3pvs_A Replication-associated 98.2 1.4E-05 4.8E-10 87.7 15.4 175 108-312 26-215 (447)
174 1sxj_A Activator 1 95 kDa subu 98.2 4.3E-06 1.5E-10 94.2 11.3 187 108-311 39-252 (516)
175 3pfi_A Holliday junction ATP-d 98.2 0.0001 3.5E-09 78.2 21.2 170 107-312 28-227 (338)
176 4fs7_A Uncharacterized protein 98.2 1.7E-05 6E-10 86.3 15.2 133 478-615 59-215 (394)
177 1xwi_A SKD1 protein; VPS4B, AA 98.2 8.4E-05 2.9E-09 78.1 19.8 179 106-312 10-223 (322)
178 3d8b_A Fidgetin-like protein 1 98.2 5.2E-05 1.8E-09 81.0 18.5 180 107-313 83-296 (357)
179 2ra8_A Uncharacterized protein 98.1 5.7E-06 2E-10 88.2 10.3 150 576-776 164-318 (362)
180 1sxj_E Activator 1 40 kDa subu 98.1 1E-05 3.4E-10 86.8 12.0 193 108-312 14-237 (354)
181 3eie_A Vacuolar protein sortin 98.1 5.8E-05 2E-09 79.5 17.4 177 107-312 17-228 (322)
182 3vfd_A Spastin; ATPase, microt 98.1 9.6E-05 3.3E-09 80.1 19.2 179 106-311 113-325 (389)
183 2qz4_A Paraplegin; AAA+, SPG7, 98.1 6.7E-05 2.3E-09 76.4 16.9 178 108-311 6-221 (262)
184 3b9p_A CG5977-PA, isoform A; A 98.1 0.00032 1.1E-08 72.9 21.7 178 106-311 19-232 (297)
185 3u61_B DNA polymerase accessor 98.0 1.5E-05 5.3E-10 84.1 11.1 174 108-312 26-216 (324)
186 1sxj_C Activator 1 40 kDa subu 98.0 3.5E-05 1.2E-09 82.0 13.7 180 109-311 26-211 (340)
187 3uk6_A RUVB-like 2; hexameric 98.0 1.9E-05 6.3E-10 85.2 11.7 195 107-311 43-302 (368)
188 1l8q_A Chromosomal replication 98.0 2.2E-05 7.4E-10 83.0 11.9 174 109-307 12-203 (324)
189 3syl_A Protein CBBX; photosynt 98.0 1E-05 3.6E-10 84.8 9.0 132 130-280 66-218 (309)
190 2qp9_X Vacuolar protein sortin 98.0 8E-05 2.7E-09 79.4 15.7 178 106-312 49-261 (355)
191 2p65_A Hypothetical protein PF 98.0 1.7E-05 5.7E-10 76.1 9.1 46 108-155 22-67 (187)
192 2ra8_A Uncharacterized protein 98.0 6.3E-06 2.1E-10 87.9 6.4 13 634-646 307-319 (362)
193 1a5t_A Delta prime, HOLB; zinc 98.0 8.2E-05 2.8E-09 78.7 14.8 170 116-312 8-205 (334)
194 2zan_A Vacuolar protein sortin 97.9 0.00021 7.2E-09 78.6 18.0 180 107-312 133-345 (444)
195 3e4g_A ATP synthase subunit S, 97.9 9.4E-06 3.2E-10 75.9 5.8 92 705-822 61-156 (176)
196 4fs7_A Uncharacterized protein 97.9 0.0001 3.6E-09 80.1 13.6 109 502-615 58-192 (394)
197 3pxg_A Negative regulator of g 97.8 0.00011 3.7E-09 81.5 11.8 148 109-281 181-340 (468)
198 4gt6_A Cell surface protein; l 97.7 0.00061 2.1E-08 73.9 16.2 131 478-615 51-189 (394)
199 3n70_A Transport activator; si 97.6 2.1E-05 7.2E-10 72.0 3.1 45 109-155 2-48 (145)
200 3cf0_A Transitional endoplasmi 97.6 0.00097 3.3E-08 69.2 16.0 173 107-307 14-223 (301)
201 1qvr_A CLPB protein; coiled co 97.6 0.00018 6.1E-09 86.3 11.8 152 109-278 171-344 (854)
202 3e4g_A ATP synthase subunit S, 97.6 6.5E-05 2.2E-09 70.1 5.6 84 490-574 61-153 (176)
203 3ec2_A DNA replication protein 97.6 5.5E-05 1.9E-09 72.2 4.9 115 116-249 20-142 (180)
204 4b4t_J 26S protease regulatory 97.6 0.0043 1.5E-07 65.8 19.8 152 130-307 181-356 (405)
205 1io0_A Tropomodulin; LRR prote 97.5 5.8E-05 2E-09 72.3 4.7 103 512-616 33-159 (185)
206 1r6b_X CLPA protein; AAA+, N-t 97.5 0.001 3.4E-08 78.9 16.4 154 109-279 187-362 (758)
207 2gno_A DNA polymerase III, gam 97.5 0.00037 1.3E-08 72.2 10.6 144 116-279 3-152 (305)
208 1in4_A RUVB, holliday junction 97.4 0.0014 4.9E-08 69.1 14.6 49 261-312 175-223 (334)
209 1io0_A Tropomodulin; LRR prote 97.4 7.2E-05 2.5E-09 71.6 3.8 108 487-596 33-163 (185)
210 4b4t_L 26S protease subunit RP 97.4 0.0043 1.5E-07 67.0 17.6 150 130-306 214-388 (437)
211 3hu3_A Transitional endoplasmi 97.4 0.0014 4.8E-08 72.5 13.9 168 109-304 205-406 (489)
212 4b4t_K 26S protease regulatory 97.4 0.0028 9.6E-08 68.3 15.7 149 130-305 205-379 (428)
213 4b4t_I 26S protease regulatory 97.4 0.0075 2.6E-07 64.2 18.6 150 130-305 215-388 (437)
214 3rw6_A Nuclear RNA export fact 97.3 0.00017 5.7E-09 72.8 5.5 78 512-590 167-257 (267)
215 4b4t_H 26S protease regulatory 97.3 0.0079 2.7E-07 64.7 18.6 150 130-305 242-415 (467)
216 2w58_A DNAI, primosome compone 97.3 0.00049 1.7E-08 66.8 8.6 121 109-249 26-158 (202)
217 3pxi_A Negative regulator of g 97.3 0.0013 4.3E-08 78.0 13.5 147 109-280 181-339 (758)
218 3rw6_A Nuclear RNA export fact 97.2 0.00043 1.5E-08 69.8 6.8 78 489-568 169-258 (267)
219 4b4t_M 26S protease regulatory 97.2 0.0045 1.5E-07 66.7 14.9 168 109-305 182-387 (434)
220 4fcw_A Chaperone protein CLPB; 97.2 0.00043 1.5E-08 72.4 6.9 59 109-172 18-85 (311)
221 1ofh_A ATP-dependent HSL prote 97.2 0.0009 3.1E-08 69.8 9.0 45 109-155 16-74 (310)
222 1lv7_A FTSH; alpha/beta domain 97.1 0.0044 1.5E-07 62.6 13.5 177 106-309 10-222 (257)
223 2ce7_A Cell division protein F 97.1 0.0046 1.6E-07 67.8 14.2 173 107-305 15-221 (476)
224 2r62_A Cell division protease 97.1 0.00073 2.5E-08 68.9 7.0 49 107-155 10-68 (268)
225 1ojl_A Transcriptional regulat 97.0 0.00066 2.3E-08 70.5 6.0 45 109-155 3-49 (304)
226 4gt6_A Cell surface protein; l 96.9 0.011 3.8E-07 63.8 15.4 120 467-591 65-189 (394)
227 2bjv_A PSP operon transcriptio 96.9 0.00098 3.3E-08 67.8 6.4 59 109-172 7-67 (265)
228 2cvh_A DNA repair and recombin 96.9 0.0044 1.5E-07 60.8 10.6 44 131-180 20-63 (220)
229 3pxi_A Negative regulator of g 96.8 0.00093 3.2E-08 79.1 5.8 59 109-172 492-559 (758)
230 1n0w_A DNA repair protein RAD5 96.6 0.016 5.3E-07 57.8 12.1 93 130-223 23-130 (243)
231 2kjq_A DNAA-related protein; s 96.5 0.0032 1.1E-07 57.5 6.2 40 130-172 35-74 (149)
232 4h09_A Hypothetical leucine ri 96.5 0.0095 3.3E-07 64.0 10.6 128 482-615 209-340 (379)
233 3m6a_A ATP-dependent protease 96.4 0.014 4.7E-07 65.7 12.0 26 130-155 107-132 (543)
234 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.002 6.8E-08 66.0 4.5 70 131-224 123-194 (331)
235 3io5_A Recombination and repai 96.4 0.012 4.2E-07 59.9 10.2 86 133-224 30-123 (333)
236 3cf2_A TER ATPase, transitiona 96.4 0.023 7.9E-07 66.1 13.6 152 130-307 237-409 (806)
237 3t15_A Ribulose bisphosphate c 96.3 0.0044 1.5E-07 63.9 6.4 26 130-155 35-60 (293)
238 2z43_A DNA repair and recombin 96.3 0.015 5E-07 60.9 10.3 93 130-223 106-214 (324)
239 4h09_A Hypothetical leucine ri 96.2 0.019 6.5E-07 61.6 11.2 136 466-608 217-356 (379)
240 3hr8_A Protein RECA; alpha and 96.2 0.013 4.4E-07 61.6 9.2 86 131-224 61-151 (356)
241 1v5w_A DMC1, meiotic recombina 96.2 0.025 8.4E-07 59.6 11.4 58 131-189 122-182 (343)
242 1jr3_D DNA polymerase III, del 96.1 0.036 1.2E-06 58.5 12.7 160 126-311 13-184 (343)
243 2i1q_A DNA repair and recombin 96.1 0.017 5.7E-07 60.5 9.4 58 131-189 98-168 (322)
244 2c9o_A RUVB-like 1; hexameric 96.0 0.015 5.2E-07 64.0 9.1 48 108-155 37-87 (456)
245 2qgz_A Helicase loader, putati 96.0 0.012 4.3E-07 60.9 7.8 51 118-170 136-189 (308)
246 2zr9_A Protein RECA, recombina 95.9 0.024 8.1E-07 59.7 9.6 86 130-223 60-150 (349)
247 1r6b_X CLPA protein; AAA+, N-t 95.9 0.012 4.2E-07 69.5 8.3 56 109-172 459-523 (758)
248 3ice_A Transcription terminati 95.9 0.018 6.3E-07 60.1 8.4 101 122-223 164-272 (422)
249 1xp8_A RECA protein, recombina 95.8 0.028 9.6E-07 59.4 9.8 86 130-223 73-163 (366)
250 1u94_A RECA protein, recombina 95.8 0.024 8.3E-07 59.7 9.2 86 130-223 62-152 (356)
251 3c8u_A Fructokinase; YP_612366 95.8 0.0085 2.9E-07 58.2 5.3 39 117-155 6-46 (208)
252 3lda_A DNA repair protein RAD5 95.8 0.068 2.3E-06 57.2 12.6 93 130-223 177-284 (400)
253 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.03 1E-06 55.2 9.0 39 131-172 23-61 (235)
254 1ypw_A Transitional endoplasmi 95.7 0.031 1.1E-06 66.0 10.4 129 130-281 237-387 (806)
255 2x8a_A Nuclear valosin-contain 95.6 0.051 1.7E-06 55.2 10.6 127 132-280 45-192 (274)
256 1qvr_A CLPB protein; coiled co 95.6 0.0079 2.7E-07 72.0 5.2 59 109-172 559-626 (854)
257 4a74_A DNA repair and recombin 95.5 0.055 1.9E-06 53.2 10.0 46 131-176 25-73 (231)
258 1iy2_A ATP-dependent metallopr 95.4 0.034 1.2E-06 56.7 8.4 24 132-155 74-97 (278)
259 1odf_A YGR205W, hypothetical 3 95.4 0.095 3.3E-06 53.5 11.5 55 129-183 29-83 (290)
260 1sky_E F1-ATPase, F1-ATP synth 95.4 0.05 1.7E-06 58.8 9.7 91 131-223 151-256 (473)
261 2px0_A Flagellar biosynthesis 95.2 0.063 2.2E-06 55.0 9.7 87 130-221 104-191 (296)
262 2dhr_A FTSH; AAA+ protein, hex 95.2 0.028 9.5E-07 62.0 7.3 49 107-155 30-88 (499)
263 3kb2_A SPBC2 prophage-derived 95.2 0.012 4.1E-07 55.0 3.9 24 132-155 2-25 (173)
264 3dm5_A SRP54, signal recogniti 95.2 0.11 3.7E-06 56.1 11.7 26 130-155 99-124 (443)
265 3co5_A Putative two-component 95.2 0.0052 1.8E-07 55.7 1.2 45 109-155 5-51 (143)
266 1qhx_A CPT, protein (chloramph 95.1 0.013 4.4E-07 55.2 3.7 24 132-155 4-27 (178)
267 3vaa_A Shikimate kinase, SK; s 95.0 0.015 5.3E-07 55.9 4.1 26 130-155 24-49 (199)
268 1vma_A Cell division protein F 95.0 0.097 3.3E-06 53.8 10.3 87 131-222 104-196 (306)
269 1rz3_A Hypothetical protein rb 95.0 0.023 7.7E-07 54.8 5.2 40 116-155 4-46 (201)
270 2r6a_A DNAB helicase, replicat 94.9 1.2 4.2E-05 48.6 19.5 51 130-184 202-252 (454)
271 3kl4_A SRP54, signal recogniti 94.8 0.091 3.1E-06 56.6 10.0 88 131-222 97-189 (433)
272 3trf_A Shikimate kinase, SK; a 94.8 0.018 6.3E-07 54.5 4.0 25 131-155 5-29 (185)
273 1kgd_A CASK, peripheral plasma 94.8 0.017 5.7E-07 54.6 3.6 25 131-155 5-29 (180)
274 2ck3_D ATP synthase subunit be 94.7 0.15 5.2E-06 54.9 11.3 92 129-222 151-263 (482)
275 3bh0_A DNAB-like replicative h 94.7 0.14 4.9E-06 53.0 10.9 52 130-186 67-118 (315)
276 3lw7_A Adenylate kinase relate 94.7 0.016 5.4E-07 54.3 3.2 20 132-151 2-21 (179)
277 2hf9_A Probable hydrogenase ni 94.6 0.024 8.2E-07 55.7 4.5 37 119-155 26-62 (226)
278 3t61_A Gluconokinase; PSI-biol 94.6 0.019 6.5E-07 55.4 3.5 25 131-155 18-42 (202)
279 4eun_A Thermoresistant glucoki 94.6 0.023 7.8E-07 54.7 4.1 27 129-155 27-53 (200)
280 3uie_A Adenylyl-sulfate kinase 94.6 0.02 6.9E-07 55.1 3.7 28 128-155 22-49 (200)
281 2dr3_A UPF0273 protein PH0284; 94.6 0.12 4.2E-06 51.2 9.8 40 130-172 22-61 (247)
282 1kag_A SKI, shikimate kinase I 94.6 0.018 6.2E-07 53.9 3.3 24 132-155 5-28 (173)
283 3rfe_A Platelet glycoprotein I 94.5 0.066 2.2E-06 47.3 6.6 54 470-527 12-67 (130)
284 3iij_A Coilin-interacting nucl 94.4 0.024 8.1E-07 53.5 3.7 25 131-155 11-35 (180)
285 1g5t_A COB(I)alamin adenosyltr 94.4 0.019 6.5E-07 54.3 2.9 116 132-250 29-163 (196)
286 2q6t_A DNAB replication FORK h 94.4 0.61 2.1E-05 50.8 15.5 52 131-186 200-251 (444)
287 3e70_C DPA, signal recognition 94.4 0.33 1.1E-05 50.4 12.6 56 130-188 128-184 (328)
288 2xxa_A Signal recognition part 94.4 0.16 5.5E-06 54.9 10.6 57 130-188 99-156 (433)
289 2ehv_A Hypothetical protein PH 94.4 0.1 3.4E-06 52.0 8.5 25 130-154 29-53 (251)
290 1ly1_A Polynucleotide kinase; 94.4 0.022 7.6E-07 53.6 3.4 22 132-153 3-24 (181)
291 2wsm_A Hydrogenase expression/ 94.4 0.024 8.1E-07 55.5 3.7 38 118-155 17-54 (221)
292 1zp6_A Hypothetical protein AT 94.3 0.021 7E-07 54.5 3.2 24 131-154 9-32 (191)
293 1fx0_B ATP synthase beta chain 94.3 0.14 4.7E-06 55.5 9.8 92 129-222 163-276 (498)
294 4a1f_A DNAB helicase, replicat 94.3 0.27 9.2E-06 51.1 11.7 51 131-186 46-96 (338)
295 1kht_A Adenylate kinase; phosp 94.3 0.027 9.4E-07 53.5 3.9 24 132-155 4-27 (192)
296 1via_A Shikimate kinase; struc 94.3 0.024 8.4E-07 53.1 3.4 24 132-155 5-28 (175)
297 1ls1_A Signal recognition part 94.2 0.12 4E-06 53.0 8.8 88 130-221 97-189 (295)
298 1zuh_A Shikimate kinase; alpha 94.2 0.029 9.9E-07 52.2 3.9 26 130-155 6-31 (168)
299 1pzn_A RAD51, DNA repair and r 94.2 0.12 4.1E-06 54.4 9.0 49 130-178 130-181 (349)
300 1j8m_F SRP54, signal recogniti 94.2 0.1 3.6E-06 53.4 8.3 88 131-221 98-189 (297)
301 1xjc_A MOBB protein homolog; s 94.2 0.033 1.1E-06 51.5 4.0 26 130-155 3-28 (169)
302 3tau_A Guanylate kinase, GMP k 94.2 0.03 1E-06 54.2 4.0 27 129-155 6-32 (208)
303 1nks_A Adenylate kinase; therm 94.1 0.028 9.5E-07 53.6 3.7 24 132-155 2-25 (194)
304 2qor_A Guanylate kinase; phosp 94.1 0.027 9.3E-07 54.4 3.5 26 130-155 11-36 (204)
305 2rhm_A Putative kinase; P-loop 94.1 0.029 9.8E-07 53.5 3.6 25 131-155 5-29 (193)
306 2yvu_A Probable adenylyl-sulfa 94.1 0.032 1.1E-06 53.0 3.9 26 130-155 12-37 (186)
307 3tr0_A Guanylate kinase, GMP k 94.1 0.028 9.7E-07 54.2 3.6 25 131-155 7-31 (205)
308 3a00_A Guanylate kinase, GMP k 94.0 0.027 9.1E-07 53.5 3.3 24 132-155 2-25 (186)
309 2c95_A Adenylate kinase 1; tra 94.0 0.034 1.2E-06 53.1 4.1 26 130-155 8-33 (196)
310 2j37_W Signal recognition part 94.0 0.36 1.2E-05 53.1 12.6 37 131-170 101-137 (504)
311 1ixz_A ATP-dependent metallopr 94.0 0.077 2.6E-06 53.1 6.8 127 132-280 50-200 (254)
312 3rfe_A Platelet glycoprotein I 94.0 0.081 2.8E-06 46.7 6.1 52 564-617 11-64 (130)
313 2iyv_A Shikimate kinase, SK; t 94.0 0.028 9.7E-07 53.1 3.3 24 132-155 3-26 (184)
314 3hws_A ATP-dependent CLP prote 94.0 0.056 1.9E-06 57.5 6.0 45 109-155 16-75 (363)
315 1knq_A Gluconate kinase; ALFA/ 94.0 0.034 1.1E-06 52.1 3.7 25 131-155 8-32 (175)
316 2jaq_A Deoxyguanosine kinase; 93.9 0.033 1.1E-06 53.7 3.7 23 133-155 2-24 (205)
317 1y63_A LMAJ004144AAA protein; 93.9 0.037 1.3E-06 52.4 4.0 25 130-154 9-33 (184)
318 3cmu_A Protein RECA, recombina 93.9 0.14 4.6E-06 65.3 9.9 85 130-222 1426-1515(2050)
319 3l0o_A Transcription terminati 93.9 0.052 1.8E-06 56.7 5.1 53 121-174 164-217 (427)
320 2ze6_A Isopentenyl transferase 93.9 0.033 1.1E-06 55.8 3.7 24 132-155 2-25 (253)
321 1ye8_A Protein THEP1, hypothet 93.9 0.036 1.2E-06 52.1 3.7 23 133-155 2-24 (178)
322 3ney_A 55 kDa erythrocyte memb 93.8 0.039 1.3E-06 52.5 3.9 26 130-155 18-43 (197)
323 2ga8_A Hypothetical 39.9 kDa p 93.8 0.055 1.9E-06 56.2 5.3 40 116-155 5-48 (359)
324 1ex7_A Guanylate kinase; subst 93.8 0.032 1.1E-06 52.6 3.3 24 132-155 2-25 (186)
325 2ffh_A Protein (FFH); SRP54, s 93.8 0.32 1.1E-05 52.3 11.4 55 131-189 98-154 (425)
326 1e6c_A Shikimate kinase; phosp 93.8 0.034 1.2E-06 51.9 3.4 24 132-155 3-26 (173)
327 1cke_A CK, MSSA, protein (cyti 93.8 0.036 1.2E-06 54.5 3.7 24 132-155 6-29 (227)
328 2if2_A Dephospho-COA kinase; a 93.8 0.036 1.2E-06 53.5 3.6 22 132-153 2-23 (204)
329 1lvg_A Guanylate kinase, GMP k 93.8 0.031 1.1E-06 53.7 3.1 25 131-155 4-28 (198)
330 2bwj_A Adenylate kinase 5; pho 93.8 0.04 1.4E-06 52.8 4.0 25 131-155 12-36 (199)
331 3umf_A Adenylate kinase; rossm 93.8 0.036 1.2E-06 53.8 3.5 26 130-155 28-53 (217)
332 2j41_A Guanylate kinase; GMP, 93.8 0.04 1.4E-06 53.1 4.0 25 131-155 6-30 (207)
333 2bdt_A BH3686; alpha-beta prot 93.7 0.035 1.2E-06 52.8 3.4 22 132-153 3-24 (189)
334 2bbw_A Adenylate kinase 4, AK4 93.7 0.042 1.4E-06 54.9 4.1 26 130-155 26-51 (246)
335 3fwy_A Light-independent proto 93.7 0.064 2.2E-06 55.4 5.6 41 129-172 46-86 (314)
336 1um8_A ATP-dependent CLP prote 93.7 0.068 2.3E-06 57.2 6.0 25 131-155 72-96 (376)
337 2r44_A Uncharacterized protein 93.7 0.04 1.4E-06 57.8 4.0 43 109-155 28-70 (331)
338 1g8p_A Magnesium-chelatase 38 93.7 0.038 1.3E-06 58.4 3.9 47 107-155 23-69 (350)
339 1tev_A UMP-CMP kinase; ploop, 93.6 0.042 1.4E-06 52.4 3.7 25 131-155 3-27 (196)
340 4gp7_A Metallophosphoesterase; 93.6 0.029 1E-06 52.4 2.5 22 131-152 9-30 (171)
341 2vli_A Antibiotic resistance p 93.6 0.033 1.1E-06 52.6 2.9 25 131-155 5-29 (183)
342 3cm0_A Adenylate kinase; ATP-b 93.5 0.043 1.5E-06 51.9 3.7 24 132-155 5-28 (186)
343 1ukz_A Uridylate kinase; trans 93.5 0.043 1.5E-06 52.8 3.7 26 130-155 14-39 (203)
344 1uf9_A TT1252 protein; P-loop, 93.5 0.039 1.3E-06 53.0 3.4 26 129-154 6-31 (203)
345 3asz_A Uridine kinase; cytidin 93.5 0.039 1.3E-06 53.5 3.4 26 130-155 5-30 (211)
346 2cdn_A Adenylate kinase; phosp 93.4 0.057 1.9E-06 51.9 4.4 25 131-155 20-44 (201)
347 1rj9_A FTSY, signal recognitio 93.4 0.079 2.7E-06 54.5 5.7 26 130-155 101-126 (304)
348 2pt5_A Shikimate kinase, SK; a 93.4 0.048 1.6E-06 50.6 3.7 23 133-155 2-24 (168)
349 1gvn_B Zeta; postsegregational 93.4 0.057 2E-06 55.2 4.5 26 130-155 32-57 (287)
350 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.044 1.5E-06 55.2 3.5 25 131-155 4-28 (260)
351 1znw_A Guanylate kinase, GMP k 93.3 0.047 1.6E-06 52.8 3.6 26 130-155 19-44 (207)
352 2plr_A DTMP kinase, probable t 93.3 0.049 1.7E-06 52.8 3.7 24 132-155 5-28 (213)
353 2z0h_A DTMP kinase, thymidylat 93.3 0.12 4E-06 49.3 6.4 23 133-155 2-24 (197)
354 2wwf_A Thymidilate kinase, put 93.3 0.057 1.9E-06 52.3 4.1 32 131-164 10-41 (212)
355 1aky_A Adenylate kinase; ATP:A 93.3 0.057 1.9E-06 52.8 4.1 25 131-155 4-28 (220)
356 2qt1_A Nicotinamide riboside k 93.2 0.042 1.4E-06 53.1 3.1 24 131-154 21-44 (207)
357 2pbr_A DTMP kinase, thymidylat 93.2 0.052 1.8E-06 51.7 3.7 23 133-155 2-24 (195)
358 1z6g_A Guanylate kinase; struc 93.2 0.043 1.5E-06 53.6 3.2 26 130-155 22-47 (218)
359 1nn5_A Similar to deoxythymidy 93.2 0.058 2E-06 52.4 4.1 25 131-155 9-33 (215)
360 1jjv_A Dephospho-COA kinase; P 93.2 0.043 1.5E-06 53.0 3.1 22 132-153 3-24 (206)
361 1qf9_A UMP/CMP kinase, protein 93.1 0.054 1.8E-06 51.5 3.7 25 131-155 6-30 (194)
362 2f1r_A Molybdopterin-guanine d 93.1 0.038 1.3E-06 51.5 2.4 25 131-155 2-26 (171)
363 3vr4_D V-type sodium ATPase su 93.1 0.15 5.1E-06 54.7 7.3 90 130-222 150-258 (465)
364 2grj_A Dephospho-COA kinase; T 93.1 0.055 1.9E-06 51.5 3.6 25 131-155 12-36 (192)
365 1zak_A Adenylate kinase; ATP:A 93.1 0.057 1.9E-06 52.9 3.9 26 130-155 4-29 (222)
366 1htw_A HI0065; nucleotide-bind 93.1 0.055 1.9E-06 49.6 3.4 26 130-155 32-57 (158)
367 4e22_A Cytidylate kinase; P-lo 93.0 0.052 1.8E-06 54.3 3.6 26 130-155 26-51 (252)
368 1zd8_A GTP:AMP phosphotransfer 93.0 0.058 2E-06 53.0 3.8 25 131-155 7-31 (227)
369 2b8t_A Thymidine kinase; deoxy 93.0 0.037 1.2E-06 54.0 2.2 112 130-250 11-126 (223)
370 3fb4_A Adenylate kinase; psych 92.9 0.061 2.1E-06 52.4 3.8 23 133-155 2-24 (216)
371 1np6_A Molybdopterin-guanine d 92.9 0.071 2.4E-06 49.7 4.0 25 131-155 6-30 (174)
372 1gtv_A TMK, thymidylate kinase 92.9 0.037 1.3E-06 53.8 2.1 24 132-155 1-24 (214)
373 1s96_A Guanylate kinase, GMP k 92.9 0.059 2E-06 52.5 3.6 26 130-155 15-40 (219)
374 1tue_A Replication protein E1; 92.9 0.11 3.7E-06 49.4 5.1 37 119-155 45-82 (212)
375 3aez_A Pantothenate kinase; tr 92.8 0.055 1.9E-06 55.9 3.5 42 129-171 88-129 (312)
376 2jeo_A Uridine-cytidine kinase 92.8 0.057 1.9E-06 53.8 3.4 26 130-155 24-49 (245)
377 2i3b_A HCR-ntpase, human cance 92.8 0.061 2.1E-06 51.0 3.5 25 132-156 2-26 (189)
378 2p5t_B PEZT; postsegregational 92.8 0.062 2.1E-06 53.8 3.7 26 130-155 31-56 (253)
379 3nwj_A ATSK2; P loop, shikimat 92.7 0.063 2.1E-06 53.4 3.5 25 131-155 48-72 (250)
380 3p32_A Probable GTPase RV1496/ 92.6 0.2 7E-06 52.8 7.6 37 119-155 65-103 (355)
381 1uj2_A Uridine-cytidine kinase 92.6 0.062 2.1E-06 53.8 3.3 27 129-155 20-46 (252)
382 3nbx_X ATPase RAVA; AAA+ ATPas 92.5 0.071 2.4E-06 58.8 4.0 43 109-155 23-65 (500)
383 2v54_A DTMP kinase, thymidylat 92.5 0.078 2.7E-06 50.9 3.8 25 131-155 4-28 (204)
384 3r20_A Cytidylate kinase; stru 92.5 0.077 2.6E-06 52.0 3.7 25 131-155 9-33 (233)
385 1q57_A DNA primase/helicase; d 92.4 0.54 1.9E-05 52.2 11.2 52 131-186 242-293 (503)
386 3dl0_A Adenylate kinase; phosp 92.4 0.073 2.5E-06 51.8 3.6 23 133-155 2-24 (216)
387 3ake_A Cytidylate kinase; CMP 92.4 0.08 2.7E-06 51.0 3.9 24 132-155 3-26 (208)
388 3sr0_A Adenylate kinase; phosp 92.3 0.083 2.8E-06 50.9 3.8 23 133-155 2-24 (206)
389 1m7g_A Adenylylsulfate kinase; 92.3 0.083 2.8E-06 51.2 3.8 27 129-155 23-49 (211)
390 2pez_A Bifunctional 3'-phospho 92.3 0.085 2.9E-06 49.5 3.7 25 131-155 5-29 (179)
391 3end_A Light-independent proto 92.3 0.13 4.6E-06 53.0 5.6 43 128-173 38-80 (307)
392 3tqc_A Pantothenate kinase; bi 92.2 0.093 3.2E-06 54.2 4.2 26 130-155 91-116 (321)
393 2zts_A Putative uncharacterize 92.2 0.21 7.3E-06 49.5 6.9 48 131-182 30-77 (251)
394 1g41_A Heat shock protein HSLU 92.1 0.096 3.3E-06 56.5 4.3 25 131-155 50-74 (444)
395 3tlx_A Adenylate kinase 2; str 92.1 0.089 3E-06 52.3 3.7 26 130-155 28-53 (243)
396 3b9q_A Chloroplast SRP recepto 92.0 0.1 3.5E-06 53.6 4.3 25 131-155 100-124 (302)
397 3lnc_A Guanylate kinase, GMP k 92.0 0.056 1.9E-06 53.3 2.2 25 131-155 27-52 (231)
398 2onk_A Molybdate/tungstate ABC 92.0 0.089 3E-06 52.1 3.6 26 129-155 23-48 (240)
399 3d3q_A TRNA delta(2)-isopenten 92.0 0.083 2.8E-06 54.8 3.4 24 132-155 8-31 (340)
400 3io3_A DEHA2D07832P; chaperone 91.9 0.22 7.4E-06 52.2 6.7 49 126-175 13-61 (348)
401 3be4_A Adenylate kinase; malar 91.9 0.094 3.2E-06 51.1 3.7 25 131-155 5-29 (217)
402 1zu4_A FTSY; GTPase, signal re 91.9 0.13 4.5E-06 53.2 5.0 38 130-170 104-141 (320)
403 1vht_A Dephospho-COA kinase; s 91.9 0.086 3E-06 51.3 3.4 23 131-153 4-26 (218)
404 1ak2_A Adenylate kinase isoenz 91.9 0.11 3.9E-06 51.1 4.3 25 131-155 16-40 (233)
405 1cr0_A DNA primase/helicase; R 91.9 0.25 8.7E-06 50.6 7.1 52 130-185 34-85 (296)
406 1e4v_A Adenylate kinase; trans 91.8 0.099 3.4E-06 50.8 3.7 23 133-155 2-24 (214)
407 2xb4_A Adenylate kinase; ATP-b 91.8 0.099 3.4E-06 51.2 3.7 23 133-155 2-24 (223)
408 2pcj_A ABC transporter, lipopr 91.8 0.077 2.6E-06 52.0 2.8 25 131-155 30-54 (224)
409 3tif_A Uncharacterized ABC tra 91.8 0.079 2.7E-06 52.3 2.9 26 130-155 30-55 (235)
410 1a7j_A Phosphoribulokinase; tr 91.7 0.066 2.3E-06 54.7 2.4 26 130-155 4-29 (290)
411 2f6r_A COA synthase, bifunctio 91.7 0.089 3E-06 53.6 3.3 23 130-152 74-96 (281)
412 3bgw_A DNAB-like replicative h 91.7 0.63 2.1E-05 50.6 10.2 50 130-184 196-245 (444)
413 3cmu_A Protein RECA, recombina 91.6 0.41 1.4E-05 61.0 9.7 86 130-223 382-472 (2050)
414 3k1j_A LON protease, ATP-depen 91.6 0.13 4.5E-06 58.7 5.0 43 109-155 42-84 (604)
415 1oix_A RAS-related protein RAB 91.6 0.1 3.4E-06 49.6 3.4 25 131-155 29-53 (191)
416 3b85_A Phosphate starvation-in 91.5 0.078 2.7E-06 51.2 2.5 24 131-154 22-45 (208)
417 3exa_A TRNA delta(2)-isopenten 91.5 0.09 3.1E-06 53.6 3.0 25 131-155 3-27 (322)
418 1sq5_A Pantothenate kinase; P- 91.5 0.099 3.4E-06 54.0 3.4 27 129-155 78-104 (308)
419 2cbz_A Multidrug resistance-as 91.4 0.091 3.1E-06 51.9 2.9 26 130-155 30-55 (237)
420 3iqw_A Tail-anchored protein t 91.4 0.25 8.7E-06 51.4 6.5 48 126-176 11-58 (334)
421 2r8r_A Sensor protein; KDPD, P 91.3 0.25 8.5E-06 47.8 5.8 37 133-172 8-44 (228)
422 1nlf_A Regulatory protein REPA 91.3 0.21 7.2E-06 50.7 5.7 43 131-173 30-79 (279)
423 3crm_A TRNA delta(2)-isopenten 91.3 0.11 3.9E-06 53.4 3.6 24 132-155 6-29 (323)
424 3a8t_A Adenylate isopentenyltr 91.2 0.093 3.2E-06 54.2 2.9 25 131-155 40-64 (339)
425 2d2e_A SUFC protein; ABC-ATPas 91.2 0.11 3.8E-06 51.7 3.4 24 131-154 29-52 (250)
426 2og2_A Putative signal recogni 91.2 0.14 5E-06 53.7 4.4 25 131-155 157-181 (359)
427 1b0u_A Histidine permease; ABC 91.2 0.095 3.3E-06 52.7 2.9 26 130-155 31-56 (262)
428 2c61_A A-type ATP synthase non 91.2 0.19 6.6E-06 54.2 5.4 93 130-222 151-259 (469)
429 3gfo_A Cobalt import ATP-bindi 91.1 0.096 3.3E-06 52.9 2.8 25 130-154 33-57 (275)
430 3mfy_A V-type ATP synthase alp 91.1 0.58 2E-05 51.2 9.0 50 129-183 225-275 (588)
431 1sgw_A Putative ABC transporte 91.1 0.089 3E-06 51.0 2.5 25 131-155 35-59 (214)
432 1ji0_A ABC transporter; ATP bi 91.0 0.1 3.5E-06 51.7 2.9 26 130-155 31-56 (240)
433 1yrb_A ATP(GTP)binding protein 91.0 0.13 4.3E-06 51.8 3.7 26 130-155 13-38 (262)
434 2zu0_C Probable ATP-dependent 91.0 0.12 4.1E-06 52.1 3.4 25 130-154 45-69 (267)
435 3foz_A TRNA delta(2)-isopenten 91.0 0.12 4.1E-06 52.6 3.3 25 131-155 10-34 (316)
436 2olj_A Amino acid ABC transpor 91.0 0.1 3.6E-06 52.3 2.9 26 130-155 49-74 (263)
437 3lv8_A DTMP kinase, thymidylat 91.0 0.39 1.3E-05 47.1 7.0 36 131-168 27-62 (236)
438 2pze_A Cystic fibrosis transme 91.0 0.11 3.6E-06 51.1 2.9 25 131-155 34-58 (229)
439 4eaq_A DTMP kinase, thymidylat 90.9 0.22 7.7E-06 48.8 5.2 25 131-155 26-50 (229)
440 1g6h_A High-affinity branched- 90.9 0.11 3.7E-06 52.1 2.9 26 130-155 32-57 (257)
441 4g1u_C Hemin import ATP-bindin 90.9 0.11 3.6E-06 52.4 2.9 26 130-155 36-61 (266)
442 2f9l_A RAB11B, member RAS onco 90.9 0.13 4.4E-06 49.2 3.4 23 132-154 6-28 (199)
443 2wji_A Ferrous iron transport 90.9 0.13 4.4E-06 47.4 3.3 23 132-154 4-26 (165)
444 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.8E-06 51.7 2.9 25 131-155 35-59 (247)
445 1cp2_A CP2, nitrogenase iron p 90.8 0.26 8.9E-06 49.6 5.8 38 132-172 2-39 (269)
446 2dyk_A GTP-binding protein; GT 90.7 0.13 4.5E-06 46.9 3.2 23 132-154 2-24 (161)
447 3cf2_A TER ATPase, transitiona 90.7 0.35 1.2E-05 56.2 7.3 71 131-223 511-581 (806)
448 1vpl_A ABC transporter, ATP-bi 90.7 0.12 4E-06 51.8 2.9 26 130-155 40-65 (256)
449 2ged_A SR-beta, signal recogni 90.6 0.28 9.6E-06 46.4 5.6 25 130-154 47-71 (193)
450 3cmw_A Protein RECA, recombina 90.6 0.46 1.6E-05 59.8 8.7 87 130-224 382-473 (1706)
451 2v9p_A Replication protein E1; 90.6 0.14 4.8E-06 52.4 3.5 27 129-155 124-150 (305)
452 3zvl_A Bifunctional polynucleo 90.6 0.13 4.4E-06 55.7 3.4 26 130-155 257-282 (416)
453 1q3t_A Cytidylate kinase; nucl 90.6 0.18 6.3E-06 49.7 4.3 26 130-155 15-40 (236)
454 2ghi_A Transport protein; mult 90.6 0.12 4.1E-06 51.8 2.9 26 130-155 45-70 (260)
455 2ixe_A Antigen peptide transpo 90.5 0.12 4.1E-06 52.2 2.9 26 130-155 44-69 (271)
456 4tmk_A Protein (thymidylate ki 90.5 0.44 1.5E-05 45.9 6.8 26 131-156 3-28 (213)
457 2yhs_A FTSY, cell division pro 90.5 0.18 6.3E-06 54.8 4.5 25 131-155 293-317 (503)
458 2zej_A Dardarin, leucine-rich 90.5 0.12 4.3E-06 48.6 2.9 22 133-154 4-25 (184)
459 3gqb_B V-type ATP synthase bet 90.5 0.38 1.3E-05 51.5 6.8 93 130-222 146-261 (464)
460 2qi9_C Vitamin B12 import ATP- 90.5 0.12 4.2E-06 51.3 2.9 25 131-155 26-50 (249)
461 1mv5_A LMRA, multidrug resista 90.4 0.12 4.1E-06 51.3 2.7 25 131-155 28-52 (243)
462 3cmw_A Protein RECA, recombina 90.4 0.5 1.7E-05 59.4 8.7 86 130-223 1430-1520(1706)
463 2afh_E Nitrogenase iron protei 90.4 0.27 9.2E-06 50.2 5.5 39 131-172 2-40 (289)
464 2nq2_C Hypothetical ABC transp 90.3 0.13 4.5E-06 51.3 2.9 25 131-155 31-55 (253)
465 2yz2_A Putative ABC transporte 90.3 0.13 4.5E-06 51.8 2.9 26 130-155 32-57 (266)
466 2ihy_A ABC transporter, ATP-bi 90.2 0.13 4.5E-06 52.1 2.9 26 130-155 46-71 (279)
467 1ltq_A Polynucleotide kinase; 90.2 0.15 5.1E-06 52.5 3.4 23 132-154 3-25 (301)
468 2ce2_X GTPase HRAS; signaling 90.2 0.15 5.2E-06 46.5 3.2 22 133-154 5-26 (166)
469 2eyu_A Twitching motility prot 90.2 0.16 5.4E-06 51.0 3.4 26 130-155 24-49 (261)
470 4edh_A DTMP kinase, thymidylat 90.1 0.5 1.7E-05 45.6 6.7 25 131-155 6-30 (213)
471 1z2a_A RAS-related protein RAB 90.0 0.17 5.6E-06 46.5 3.2 23 132-154 6-28 (168)
472 3sop_A Neuronal-specific septi 89.9 0.17 5.7E-06 51.1 3.4 23 133-155 4-26 (270)
473 2wjg_A FEOB, ferrous iron tran 89.9 0.16 5.5E-06 47.8 3.1 23 132-154 8-30 (188)
474 2v3c_C SRP54, signal recogniti 89.9 0.14 4.9E-06 55.3 3.0 37 131-170 99-135 (432)
475 3eph_A TRNA isopentenyltransfe 89.8 0.17 5.6E-06 53.6 3.3 24 132-155 3-26 (409)
476 3con_A GTPase NRAS; structural 89.8 0.17 5.9E-06 47.7 3.2 23 132-154 22-44 (190)
477 1tf7_A KAIC; homohexamer, hexa 89.7 0.58 2E-05 52.3 8.0 39 130-171 280-318 (525)
478 2orw_A Thymidine kinase; TMTK, 89.7 0.39 1.3E-05 45.2 5.5 24 132-155 4-27 (184)
479 1u0j_A DNA replication protein 89.7 0.45 1.5E-05 47.3 6.2 40 116-155 87-128 (267)
480 3kjh_A CO dehydrogenase/acetyl 89.6 0.4 1.4E-05 47.5 6.0 42 134-178 3-44 (254)
481 1svm_A Large T antigen; AAA+ f 89.6 0.21 7.2E-06 52.9 4.0 27 129-155 167-193 (377)
482 2qmh_A HPR kinase/phosphorylas 89.6 0.13 4.6E-06 48.5 2.1 25 131-155 34-58 (205)
483 1r8s_A ADP-ribosylation factor 89.5 0.2 6.9E-06 45.8 3.4 21 134-154 3-23 (164)
484 2lkc_A Translation initiation 89.4 0.22 7.7E-06 46.2 3.7 25 130-154 7-31 (178)
485 4dzz_A Plasmid partitioning pr 89.4 0.29 1E-05 46.8 4.6 42 132-176 2-44 (206)
486 2gj8_A MNME, tRNA modification 89.4 0.17 5.9E-06 47.0 2.8 23 132-154 5-27 (172)
487 3geh_A MNME, tRNA modification 89.4 1.4 4.6E-05 48.1 10.3 23 133-155 226-248 (462)
488 1u8z_A RAS-related protein RAL 89.4 0.2 6.7E-06 45.9 3.2 23 132-154 5-27 (168)
489 2pjz_A Hypothetical protein ST 89.3 0.17 5.8E-06 50.8 2.8 24 131-154 30-53 (263)
490 3nh6_A ATP-binding cassette SU 89.3 0.14 4.9E-06 52.5 2.3 25 130-154 79-103 (306)
491 3fvq_A Fe(3+) IONS import ATP- 89.3 0.2 6.7E-06 52.5 3.4 26 130-155 29-54 (359)
492 1c1y_A RAS-related protein RAP 89.2 0.21 7E-06 45.8 3.2 22 133-154 5-26 (167)
493 2nzj_A GTP-binding protein REM 89.2 0.19 6.6E-06 46.5 3.0 23 132-154 5-27 (175)
494 2ocp_A DGK, deoxyguanosine kin 89.2 0.21 7.2E-06 49.4 3.4 25 131-155 2-26 (241)
495 1nrj_B SR-beta, signal recogni 89.2 0.26 8.8E-06 47.8 4.0 27 129-155 10-36 (218)
496 1m7b_A RND3/RHOE small GTP-bin 89.1 0.2 7E-06 47.0 3.2 23 132-154 8-30 (184)
497 3ihw_A Centg3; RAS, centaurin, 89.1 0.21 7E-06 47.1 3.2 23 132-154 21-43 (184)
498 1z08_A RAS-related protein RAB 89.1 0.21 7.2E-06 46.0 3.2 23 132-154 7-29 (170)
499 1kao_A RAP2A; GTP-binding prot 89.1 0.21 7.3E-06 45.6 3.2 22 133-154 5-26 (167)
500 2www_A Methylmalonic aciduria 89.0 0.34 1.2E-05 50.9 5.1 26 130-155 73-98 (349)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1e-45 Score=423.78 Aligned_cols=310 Identities=17% Similarity=0.212 Sum_probs=242.0
Q ss_pred cccchhHHHHHHHHHhcCC---CCCEEEEEcCCCChHHHHHHHHHH--HHHhhcCCCCeEEEEEeCCCc--CHHHHHHHH
Q 038611 111 VGEKTKKVVEIIWENLMGD---KAPKIGVWGMGGIGKTTIMKEINN--RLQKETNKFNVVIWVTVSQPL--DLIKLQTEI 183 (837)
Q Consensus 111 vGr~~~~~~~~l~~~l~~~---~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i 183 (837)
||| +.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. +...+|+.++||++++.+ +...+++.|
T Consensus 131 ~GR--~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIR--EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCC--HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699 77889999988643 679999999999999999999998 33 557899999999999885 789999999
Q ss_pred HHHhcCCCC-------CCccHHHHHHHHHHHHhcCC-eEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhhh
Q 038611 184 ATALKESLP-------ENEDKVSRAGRLLGMLKAKA-KFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCRS 255 (837)
Q Consensus 184 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~ 255 (837)
+.+++.... ...+.......+.+.+ .++ ||||||||||+..++ .+. ..+||+||||||++.++..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 999986421 1112233344555555 675 999999999997654 111 1378999999999999988
Q ss_pred CC-cce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHHHh
Q 038611 256 MK-CKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRG 333 (837)
Q Consensus 256 ~~-~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l~~ 333 (837)
++ ... |+|++|+.++||+||.+.++.... ++.+.+++++|+++|+|+||||+++|+.|+.+ . |.++ +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH
Confidence 76 334 999999999999999999776522 23488899999999999999999999999875 2 4433 34433
Q ss_pred ccccCCCCchhhhhhhHhhhhcCCchhhHHHHh-----------hhccCCCCcccCHHHHHHHHHHh--CCCccchhHHH
Q 038611 334 RLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFL-----------YCALYPKNFLILKDELIDYWIAE--GVIEELKDVQA 400 (837)
Q Consensus 334 ~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~ae--g~i~~~~~~~~ 400 (837)
..+.. ...++..++.+||+.|| +++|.||+ |||+||+++.|+ ++.|+|+ ||+........
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~-~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLA-MALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHH-HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhcc--cHHHHHHHHhccccccc-HHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 32211 13578999999999999 89999999 999999999999 8999999 99987432334
Q ss_pred HHHhHHHHHHHHHhhcccccccc--cceeeehhHHHHHHHHHHhhcC
Q 038611 401 KYDRGHTILNRLVNCCLLESARY--GRCVKMHDLIRDMALHIISKSH 445 (837)
Q Consensus 401 ~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~d~a~~~~~~~~ 445 (837)
.++.++ ++++|+++||+++... ..+|+|||+||+||++++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 556666 9999999999998643 2579999999999999987664
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.7e-39 Score=368.02 Aligned_cols=284 Identities=16% Similarity=0.204 Sum_probs=222.8
Q ss_pred cccccchhHHHHHHHHHhcC-CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCcCHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG-DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..||| ++++++|.++|.+ +..++|+|+||||+||||||+++|++. +...+|+. ++|+++++.++...++..|+..
T Consensus 129 ~~VGR--e~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCC--HHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCc--HHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34999 7788899988865 568999999999999999999999875 44567886 9999999999988888888776
Q ss_pred hcCCC---CCC----ccH----HHHHHHHHHHH--hcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHh
Q 038611 187 LKESL---PEN----EDK----VSRAGRLLGML--KAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVC 253 (837)
Q Consensus 187 l~~~~---~~~----~~~----~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 253 (837)
++... ... ... ......+...+ ..++|+||||||||+...|+.+ ..||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHH
Confidence 53211 100 011 11222333322 2579999999999998878754 2689999999999998
Q ss_pred hhCCcce-EEec------cCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCc-CHHHHH
Q 038611 254 RSMKCKQ-VEVE------LLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEE-EIYEWQ 325 (837)
Q Consensus 254 ~~~~~~~-~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~~~~w~ 325 (837)
..+.... +.++ +|+.+|||+||.+.++.. ..++..+| |+|+||||.++|+.|+.+. ...+|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 6544332 6666 999999999999986543 12233344 9999999999999999864 567886
Q ss_pred HHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhh-HHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHh
Q 038611 326 NALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKL-RQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDR 404 (837)
Q Consensus 326 ~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~ 404 (837)
.. ....+..+|.+||+.|| ++. |.||+|||+||+++.|++..++..|+++| . +.
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---e--------ed 403 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---K--------SD 403 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---S--------HH
T ss_pred cC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---H--------HH
Confidence 42 13689999999999999 678 99999999999999999999999999887 1 24
Q ss_pred HHHHHHHHHhhcccccccccceeeehhHHHHHH
Q 038611 405 GHTILNRLVNCCLLESARYGRCVKMHDLIRDMA 437 (837)
Q Consensus 405 ~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~d~a 437 (837)
++.++++|+++||++......+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 778999999999999864456899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-37 Score=391.66 Aligned_cols=312 Identities=23% Similarity=0.324 Sum_probs=245.3
Q ss_pred CCCccccccchhHHHHHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCc--CHHHH
Q 038611 105 LPTETLVGEKTKKVVEIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPL--DLIKL 179 (837)
Q Consensus 105 ~~~~~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~--~~~~~ 179 (837)
.+.+.+||| ++++++|.+.|. +++.++|+|+||||+||||||+++|++...... .++.++||++++.. +....
T Consensus 121 ~~~~~~vgR--~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 121 QRPVIFVTR--KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCSSCCCC--HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCceeccH--HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 344579999 788999999885 456899999999999999999999988633334 55678899998854 34555
Q ss_pred HHHHHHHhcCCCC---CCccHHHHHHHHHHHHhcCC--eEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhh
Q 038611 180 QTEIATALKESLP---ENEDKVSRAGRLLGMLKAKA--KFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCR 254 (837)
Q Consensus 180 ~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 254 (837)
+..++..+..... ........+...++..+.++ |+||||||||+..+|..+ .+||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 6778887765432 11222333333344444555 999999999998777643 56899999999999985
Q ss_pred h-CCcce-EEecc-CCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHH
Q 038611 255 S-MKCKQ-VEVEL-LSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNEL 331 (837)
Q Consensus 255 ~-~~~~~-~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l 331 (837)
. ++... +.+.+ |+.++|++||...++... +. ..+++++|+++|+|+||||.++|++|+.+. ..|...++.+
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~---~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK-ED---LPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TT---CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hh---CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHH
Confidence 5 34444 89986 999999999999886542 22 456799999999999999999999998765 4699999988
Q ss_pred HhccccC-----CCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHH
Q 038611 332 RGRLRSL-----NDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGH 406 (837)
Q Consensus 332 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~ 406 (837)
....+.. ....+.+..++.+||+.|| ++.|.||+|||+||+++.|++..++..|.++ .+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~ 412 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVE 412 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCC-HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHH
Confidence 7665422 1123579999999999999 7999999999999999999999999999553 25678
Q ss_pred HHHHHHHhhccccccccc--ceeeehhHHHHHHHHHHhhc
Q 038611 407 TILNRLVNCCLLESARYG--RCVKMHDLIRDMALHIISKS 444 (837)
Q Consensus 407 ~~l~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~~~ 444 (837)
.++++|+++||++...++ .+|+||++||++|+..+.++
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 899999999999987554 36999999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=333.62 Aligned_cols=308 Identities=23% Similarity=0.306 Sum_probs=233.1
Q ss_pred CCccccccchhHHHHHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC-CeEEEEEeCCCcCHHHHH--
Q 038611 106 PTETLVGEKTKKVVEIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKF-NVVIWVTVSQPLDLIKLQ-- 180 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~-- 180 (837)
+.+.+||| +.++++|.+++.. ++.++|+|+|+||+||||||++++++.......| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR--~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 122 RPVVFVTR--KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCSSCCCC--HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCeeccc--HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 44579999 7789999999873 4678999999999999999999998752214567 58999999875 333333
Q ss_pred -HHHHHHhcCCC----CCCccHHHHHHHHHHHHhc-CCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhHhh
Q 038611 181 -TEIATALKESL----PENEDKVSRAGRLLGMLKA-KAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRVCR 254 (837)
Q Consensus 181 -~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 254 (837)
..++..++... ....+.......+...+.. .+++||||||+|+...+..+ ..+++||||||++.++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 33445555311 1122333344444444433 27899999999987655432 56899999999999887
Q ss_pred hCCcceEEe---ccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhccCCcCHHHHHHHHHHH
Q 038611 255 SMKCKQVEV---ELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASMSGEEEIYEWQNALNEL 331 (837)
Q Consensus 255 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~l~~l 331 (837)
.+....+.+ ++|+.+++++||...++.... . ..+.+.+|+++|+|+||||..+|+.++... ..|...++.+
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~-~---~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-D---LPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGG-G---SCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCcc-c---ccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 655444554 589999999999999875311 1 345789999999999999999999998754 3698888888
Q ss_pred HhccccC-----CCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCccchhHHHHHHhHH
Q 038611 332 RGRLRSL-----NDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIEELKDVQAKYDRGH 406 (837)
Q Consensus 332 ~~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~ 406 (837)
....... ......+..++..||+.|| ++.|.||++||+||+++.|+...+...|.++ .+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~ 412 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVE 412 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHH
Confidence 7654321 1233578999999999999 7899999999999999999999999999542 13467
Q ss_pred HHHHHHHhhccccccccc--ceeeehhHHHHHHHHHHh
Q 038611 407 TILNRLVNCCLLESARYG--RCVKMHDLIRDMALHIIS 442 (837)
Q Consensus 407 ~~l~~L~~~~ll~~~~~~--~~~~mHdlv~d~a~~~~~ 442 (837)
.++++|+++||++...++ ..|+||++||++++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 789999999999865443 479999999999998843
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.1e-22 Score=232.93 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=131.9
Q ss_pred eccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc
Q 038611 450 KAREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV 529 (837)
Q Consensus 450 ~~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 529 (837)
..+..+..+|.. ....++++++++|.+..+++..+.++++|++|++++| .+..+++..|.++++|++|+|++|.+..
T Consensus 18 c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccc
Confidence 345566777764 4478999999999999998888899999999999999 7888877778999999999999999988
Q ss_pred c-ChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCc--cccccccCCCCCCEEeccCCCCCCCCCCccc
Q 038611 530 L-PNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIE--EVPEGMQMLENLSHLYLYSPPLKELPAGLLP 605 (837)
Q Consensus 530 l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~ 605 (837)
+ |..++++++|++|++++|......| .++++++|++|++++|.+. .+|..++++++|++|++++|.+..++...++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 7 7889999999999999975434333 6999999999999999887 4789999999999999999988776654455
Q ss_pred CCccC
Q 038611 606 RLRKL 610 (837)
Q Consensus 606 ~l~~L 610 (837)
.+++|
T Consensus 175 ~l~~L 179 (606)
T 3vq2_A 175 FLREN 179 (606)
T ss_dssp HHHHC
T ss_pred hhhcc
Confidence 44433
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=230.27 Aligned_cols=161 Identities=23% Similarity=0.282 Sum_probs=133.8
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. ....++++++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+
T Consensus 15 ~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 15 MELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 34456677763 3467999999999999998878899999999999999 68888888789999999999999998877
Q ss_pred C-hhhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcc--ccccccCCCCCCEEeccCCCCCCCCCCccc
Q 038611 531 P-NSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEE--VPEGMQMLENLSHLYLYSPPLKELPAGLLP 605 (837)
Q Consensus 531 p-~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~ 605 (837)
| ..++.+++|++|++++| .++.+| .++++++|++|++++|.+.. +|..++++++|++|++++|.+..++...++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred CHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 6 67899999999999996 566666 58999999999999998875 688999999999999999988877655466
Q ss_pred CCccC----cEEEc
Q 038611 606 RLRKL----CRLSL 615 (837)
Q Consensus 606 ~l~~L----~~L~l 615 (837)
.+++| ..|++
T Consensus 171 ~l~~L~~~~~~L~l 184 (570)
T 2z63_A 171 VLHQMPLLNLSLDL 184 (570)
T ss_dssp HHHTCTTCCCEEEC
T ss_pred chhccchhhhhccc
Confidence 66666 55655
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2e-22 Score=239.60 Aligned_cols=322 Identities=14% Similarity=0.082 Sum_probs=173.9
Q ss_pred CCCCCcccEEEccCCcCccc------------------cChhH-hhcCCCCcEEEecCCC-CcccChhhhcccccceecc
Q 038611 486 SPHCEILSTLLLQRNINLQW------------------IPECF-FAHMHGLKILNLSFTA-IEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 486 ~~~~~~L~~L~l~~~~~~~~------------------~~~~~-~~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L 545 (837)
+..+++|++|++++| .+.. +|..+ |.++++|++|+|++|. ...+|..++++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 456677777777777 3444 66654 3377777777777776 3466777777777777777
Q ss_pred cCccccC--CCc-cccccC-------CCCEEeccCCcCccccc--cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEE
Q 038611 546 QRCRRLK--RVP-SVAKLL-------ALQHLDLRGTSIEEVPE--GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRL 613 (837)
Q Consensus 546 ~~~~~l~--~lp-~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 613 (837)
++|..++ .+| .++++. +|++|++++|.+..+|. .++++++|++|++++|.+..+| . ++++++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A-FGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C-CCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h-hcCCCcceEE
Confidence 7765344 366 455554 77777777777777776 6777777777777777776666 3 6777777777
Q ss_pred EccccchhhhhhHHHHhhhhhc-cCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCC----------Cccccce
Q 038611 614 SLYFGWEALEETVEETGRLSDR-LDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGD----------SVIADLE 682 (837)
Q Consensus 614 ~l~~~~~~~~~~~~~l~~l~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~----------~~~~~~~ 682 (837)
++ ..+... ..+..+..+ .+ |+.|+++.|.+..++..+......+|..+.+..+.+.... ....++.
T Consensus 601 ~L-s~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 601 KL-DYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EC-CSSCCS-CCCTTSCEE-CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EC-cCCccc-cchHHHhhc-cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 77 333333 333446666 66 7777777776665554333333333555554443331110 0113444
Q ss_pred eeeccchhhhhccCCCCc-ccCCCCCcEEEEeeecchhhhhhccc-----------ccccc----------cc-c--ccc
Q 038611 683 VDRSVCLIANKICEKEKP-IVLPEDVQCLEMFEVYDIASLNDVLP-----------REQGL----------VN-I--GKF 737 (837)
Q Consensus 683 l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~-----------~L~~L----------~~-~--~~~ 737 (837)
+.++++.. ...... +..+++|+.|+++++. +..+|.... +|+.| .. . ..+
T Consensus 678 L~Ls~N~L----~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 678 VTLSYNEI----QKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp EECCSSCC----CSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred EEccCCcC----CccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 44444311 100000 2234556666665543 223332111 11100 00 1 144
Q ss_pred cccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccccc
Q 038611 738 SHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPE 817 (837)
Q Consensus 738 ~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~ 817 (837)
+ +|+.|+|++| .+..+|. .+..+++|+.|++++|+.+..-. .....+..+..+|+|+.|+|++|+-
T Consensus 753 ~-~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~----------l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 753 P-YLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNR----------ILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp T-TCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCB----------CCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-CcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCccccc----------ccccChHHHhcCCCCCEEECCCCCC
Confidence 5 6666666665 3444432 34456666666666533110000 0001112456688888888888754
Q ss_pred cccccCCCCcccCCCCccCC
Q 038611 818 FKTFCSDNGVLVCDPLQEIE 837 (837)
Q Consensus 818 L~~i~~~~~~~~~~sL~~l~ 837 (837)
..++. . .+++|+.|+
T Consensus 819 -~~Ip~--~--l~~~L~~Ld 833 (876)
T 4ecn_A 819 -RKVDE--K--LTPQLYILD 833 (876)
T ss_dssp -CBCCS--C--CCSSSCEEE
T ss_pred -CccCH--h--hcCCCCEEE
Confidence 77776 3 236777653
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=9.6e-22 Score=221.31 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=148.4
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|. ...+++++++++|.+..+++..+..+++|++|++++|.....++...|.++++|++|+|++|.+..+
T Consensus 18 ~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 18 INRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 3445666775 4478999999999999987777899999999999999544578777789999999999999998876
Q ss_pred -ChhhhcccccceecccCccccCCCc-c--ccccCCCCEEeccCCcCccc-ccc-ccCCCCCCEEeccCCCCCCCCCCcc
Q 038611 531 -PNSVSDLMNLISLLLQRCRRLKRVP-S--VAKLLALQHLDLRGTSIEEV-PEG-MQMLENLSHLYLYSPPLKELPAGLL 604 (837)
Q Consensus 531 -p~~i~~l~~L~~L~L~~~~~l~~lp-~--~~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~l~~~p~~~l 604 (837)
|..++.+++|++|++++|......| . +.++++|++|++++|.+..+ |.. +.++++|++|++++|.+..++...+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7889999999999999976544445 4 89999999999999999887 544 7899999999999999887766556
Q ss_pred cCC--ccCcEEEccccchhhhhh--------HHHHhhhhhccCeeEEeecccc
Q 038611 605 PRL--RKLCRLSLYFGWEALEET--------VEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 605 ~~l--~~L~~L~l~~~~~~~~~~--------~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
..+ .+|+.|++..+ ...... ...+..+ ++|+.|+++.|.+.
T Consensus 175 ~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFK 225 (455)
T ss_dssp GGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCC
T ss_pred hccccccccccccccC-cccccchhhcccccccccccc-ceeeeEecCCCccc
Confidence 665 56777777322 221111 1112344 56777777776654
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=6.2e-22 Score=235.34 Aligned_cols=329 Identities=14% Similarity=0.111 Sum_probs=199.0
Q ss_pred CCchhhhcccccEEEccccCCCC------------------CCCCC-CCCCCcccEEEccCCcCccccChhHhhcCCCCc
Q 038611 458 FPGEQEWKANLERVSLMMNDIDE------------------IPSNM-SPHCEILSTLLLQRNINLQWIPECFFAHMHGLK 518 (837)
Q Consensus 458 ~p~~~~~~~~~~~l~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 518 (837)
+|.......+++.+++++|.+.. +|..+ |..+++|++|++++|.....+|.. |.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence 66665566788888888888887 76654 337888888888888656667754 47888888
Q ss_pred EEEecCCC-Ccc--cChhhhccc-------ccceecccCccccCCCcc---ccccCCCCEEeccCCcCccccccccCCCC
Q 038611 519 ILNLSFTA-IEV--LPNSVSDLM-------NLISLLLQRCRRLKRVPS---VAKLLALQHLDLRGTSIEEVPEGMQMLEN 585 (837)
Q Consensus 519 ~L~L~~~~-i~~--lp~~i~~l~-------~L~~L~L~~~~~l~~lp~---~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 585 (837)
+|+|++|. +.. +|..++.+. +|++|+|++|. ++.+|. ++++++|++|++++|.+..+| .++++++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 88888887 763 787777776 88888888854 447765 788888888888888777888 7788888
Q ss_pred CCEEeccCCCCCCCCCCcccCCcc-CcEEEccccchhhhhhHHHHhhhhh--ccCeeEEeeccccchhh----hhhcccC
Q 038611 586 LSHLYLYSPPLKELPAGLLPRLRK-LCRLSLYFGWEALEETVEETGRLSD--RLDTFEGHFSKLNNFNI----YVKSSDG 658 (837)
Q Consensus 586 L~~L~l~~~~l~~~p~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~~--~L~~L~l~~~~~~~~~~----~~~~~~~ 658 (837)
|++|++++|.+..+|.. +.++++ |+.|++. .+... ..+..+..+ . +|+.|+++.|.+..... .......
T Consensus 597 L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls-~N~L~-~lp~~~~~~-~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPED-FCAFTDQVEGLGFS-HNKLK-YIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp ESEEECCSSCCSCCCTT-SCEECTTCCEEECC-SSCCC-SCCSCCCTT-CSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred ceEEECcCCccccchHH-HhhccccCCEEECc-CCCCC-cCchhhhcc-ccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 88888888887777776 677777 8888883 33332 112222222 2 26666666665533211 1111111
Q ss_pred CccceEEEEeccCcCCCC-----ccccceeeeccchhhhhccCCCCc-----ccCCCCCcEEEEeeecchhhhhhcc---
Q 038611 659 RESEKYCLMLSPDYVGDS-----VIADLEVDRSVCLIANKICEKEKP-----IVLPEDVQCLEMFEVYDIASLNDVL--- 725 (837)
Q Consensus 659 ~~L~~~~~~~~~~~~~~~-----~~~~~~l~l~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~l~~~~--- 725 (837)
.+|..+.+..+.+...+. ...++.+.++++... .+...... ...+++|+.|++++|. +..+|..+
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-CccchHHhhhc
Confidence 234444443333221111 122344444433111 11110000 0011245555554443 11222221
Q ss_pred --ccccccc-----------ccccccccccEEEEecC------CCCCcchhhhhhhhcCCccEEEeccccchhhhhcccc
Q 038611 726 --PREQGLV-----------NIGKFSHDLKVLRFYYC------NNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVED 786 (837)
Q Consensus 726 --~~L~~L~-----------~~~~~~~~L~~L~l~~c------~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~ 786 (837)
++|+.|. ....++ +|+.|+|++| .....+| ..+..+++|+.|++++|. +..+|.
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~L~Ls~N~-L~~Ip~--- 823 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQLQIGSND-IRKVDE--- 823 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCEEECCSSC-CCBCCS---
T ss_pred cCCCcCEEEeCCCCCCccchhhhcCC-CCCEEECCCCCCcccccccccCh--HHHhcCCCCCEEECCCCC-CCccCH---
Confidence 1222110 134677 9999999873 3333443 356789999999999994 577754
Q ss_pred chhhhhcccccccccccCCCcceEecccccc
Q 038611 787 EETEKELGTITIINILTLPRLKKLEFHYLPE 817 (837)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~ 817 (837)
. .+|+|+.|+|+++|-
T Consensus 824 -------------~--l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 824 -------------K--LTPQLYILDIADNPN 839 (876)
T ss_dssp -------------C--CCSSSCEEECCSCTT
T ss_pred -------------h--hcCCCCEEECCCCCC
Confidence 1 348999999999974
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.9e-21 Score=207.96 Aligned_cols=141 Identities=21% Similarity=0.320 Sum_probs=67.1
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
.+++.+++.+|.+..++. +..+++|++|++++| .+..++. |..+++|++|++++|.+..+|. +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence 344555555554444433 344455555555544 3333331 3445555555555555444443 444555555555
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
++|..+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 554444444444455555555555554444433 4444555555555554444433 344455555554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=3.1e-22 Score=233.95 Aligned_cols=315 Identities=12% Similarity=0.075 Sum_probs=186.5
Q ss_pred CCCCCcccEEEccCCcCccc------------------cChhHhh--cCCCCcEEEecCCCC-cccChhhhcccccceec
Q 038611 486 SPHCEILSTLLLQRNINLQW------------------IPECFFA--HMHGLKILNLSFTAI-EVLPNSVSDLMNLISLL 544 (837)
Q Consensus 486 ~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~--~l~~L~~L~L~~~~i-~~lp~~i~~l~~L~~L~ 544 (837)
+.++++|++|++++| .+.. +|..+ . ++++|++|+|++|.+ ..+|..++++++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 466778888888877 4555 67654 5 788888888888774 46777788888888888
Q ss_pred ccCccccC--CCc-ccccc------CCCCEEeccCCcCccccc--cccCCCCCCEEeccCCCCC-CCCCCcccCCccCcE
Q 038611 545 LQRCRRLK--RVP-SVAKL------LALQHLDLRGTSIEEVPE--GMQMLENLSHLYLYSPPLK-ELPAGLLPRLRKLCR 612 (837)
Q Consensus 545 L~~~~~l~--~lp-~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~-~~p~~~l~~l~~L~~ 612 (837)
+++|..++ .+| .++++ ++|++|++++|.+..+|. .++++++|++|++++|.+. .+| . ++.+++|+.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCE
Confidence 88865344 467 66665 788888888887777887 7788888888888888777 777 3 777888888
Q ss_pred EEccccchhhhhhHHHHhhhhhc-cCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCC-----C-------Cccc
Q 038611 613 LSLYFGWEALEETVEETGRLSDR-LDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVG-----D-------SVIA 679 (837)
Q Consensus 613 L~l~~~~~~~~~~~~~l~~l~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~-----~-------~~~~ 679 (837)
|++ ..+... ..+..+..+ .+ |+.|+++.|.+..++..+......+|..+.+..+.+... . ....
T Consensus 358 L~L-~~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 358 LNL-AYNQIT-EIPANFCGF-TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEC-CSSEEE-ECCTTSEEE-CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEC-CCCccc-cccHhhhhh-cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 888 333333 333446667 66 888888877776665544333333455555554433211 1 1223
Q ss_pred cceeeeccchhhhhccCCCC-cccCCCCCcEEEEeeecchhhhhhc-cc----------cccccc----------c-c--
Q 038611 680 DLEVDRSVCLIANKICEKEK-PIVLPEDVQCLEMFEVYDIASLNDV-LP----------REQGLV----------N-I-- 734 (837)
Q Consensus 680 ~~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~-~~----------~L~~L~----------~-~-- 734 (837)
++.+.++++.. ..... .+..+++|+.|+++++... .++.. +. +|+.|. . .
T Consensus 435 L~~L~Ls~N~l----~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 435 VSSINLSNNQI----SKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp EEEEECCSSCC----CSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCEEECcCCcc----CcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 44555554411 11010 1233566666666655422 33321 11 111110 0 1
Q ss_pred ccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEecccc------chhhhhccccchhhhhcccccccccccCCCcc
Q 038611 735 GKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCD------SIEEIVAVEDEETEKELGTITIINILTLPRLK 808 (837)
Q Consensus 735 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~------~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~ 808 (837)
..++ +|+.|+|++| .++.+|. .+..+++|++|++++|. -...+ +..+..+++|+
T Consensus 510 ~~l~-~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~----------------p~~l~~l~~L~ 569 (636)
T 4eco_A 510 TTLP-YLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREW----------------PEGITLCPSLT 569 (636)
T ss_dssp TTCT-TCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCC----------------CTTGGGCSSCC
T ss_pred ccCC-CcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccC----------------hHHHhcCCCCC
Confidence 1445 6666666665 3444432 34456666666665432 11112 12455688888
Q ss_pred eEecccccccccccCCCCcccCCCCccCC
Q 038611 809 KLEFHYLPEFKTFCSDNGVLVCDPLQEIE 837 (837)
Q Consensus 809 ~L~L~~~p~L~~i~~~~~~~~~~sL~~l~ 837 (837)
.|+|+++.- ..++. .. +++|+.|+
T Consensus 570 ~L~Ls~N~l-~~ip~--~~--~~~L~~L~ 593 (636)
T 4eco_A 570 QLQIGSNDI-RKVNE--KI--TPNISVLD 593 (636)
T ss_dssp EEECCSSCC-CBCCS--CC--CTTCCEEE
T ss_pred EEECCCCcC-CccCH--hH--hCcCCEEE
Confidence 888888754 77766 22 26777653
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=221.34 Aligned_cols=305 Identities=16% Similarity=0.161 Sum_probs=175.6
Q ss_pred ccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh
Q 038611 453 EHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532 (837)
Q Consensus 453 ~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 532 (837)
..+..+|.. ....++.+++.+|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+|.
T Consensus 21 ~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 21 KRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 344455542 2345666777777666666555666677777777666 5555544455666777777777766666664
Q ss_pred h-hhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCcccc-ccccCCCCCCEEeccCCCCCCCCCCcccCCcc
Q 038611 533 S-VSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVP-EGMQMLENLSHLYLYSPPLKELPAGLLPRLRK 609 (837)
Q Consensus 533 ~-i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~ 609 (837)
. +.++++|++|+|++|......| .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+|...+.++++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 3 4666677777776654333334 4666667777777666665543 35566666777777666666666555666666
Q ss_pred CcEEEccccchhhhhhHHHHhhhhhccCeeEEeecccc-chhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccc
Q 038611 610 LCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLN-NFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVC 688 (837)
Q Consensus 610 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~ 688 (837)
|+.|++ ..+.........+..+ .+|+.|+++.|... .++.... ....++.+.++++
T Consensus 178 L~~L~l-~~n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~---------------------~~~~L~~L~l~~n 234 (477)
T 2id5_A 178 LIVLRL-RHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCL---------------------YGLNLTSLSITHC 234 (477)
T ss_dssp CCEEEE-ESCCCCEECTTCSCSC-TTCCEEEEECCTTCCEECTTTT---------------------TTCCCSEEEEESS
T ss_pred CcEEeC-CCCcCcEeChhhcccC-cccceeeCCCCccccccCcccc---------------------cCccccEEECcCC
Confidence 776666 3333322222344555 66666666654321 1111000 0112344444443
Q ss_pred hhhhhccCCC-CcccCCCCCcEEEEeeecchhhhh-hcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCC
Q 038611 689 LIANKICEKE-KPIVLPEDVQCLEMFEVYDIASLN-DVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKN 766 (837)
Q Consensus 689 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 766 (837)
. +.... ..+..+++|+.|+++++.. ..++ .. ...++ +|+.|+|++| .+..+.+ ..+..+++
T Consensus 235 ~----l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~---------~~~l~-~L~~L~L~~n-~l~~~~~-~~~~~l~~ 297 (477)
T 2id5_A 235 N----LTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSM---------LHELL-RLQEIQLVGG-QLAVVEP-YAFRGLNY 297 (477)
T ss_dssp C----CCSCCHHHHTTCTTCCEEECCSSCC-CEECTTS---------CTTCT-TCCEEECCSS-CCSEECT-TTBTTCTT
T ss_pred c----ccccCHHHhcCccccCeeECCCCcC-CccChhh---------ccccc-cCCEEECCCC-ccceECH-HHhcCccc
Confidence 1 11111 0134467888888876652 2222 11 22456 8888888886 5555533 35667888
Q ss_pred ccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEeccccc
Q 038611 767 LECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLP 816 (837)
Q Consensus 767 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p 816 (837)
|+.|++++| .++.++. .....+++|+.|+|+++|
T Consensus 298 L~~L~L~~N-~l~~~~~---------------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEE---------------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS-CCSCCCG---------------GGBSCGGGCCEEECCSSC
T ss_pred CCEEECCCC-cCceeCH---------------hHcCCCcccCEEEccCCC
Confidence 888888887 5555532 134567888888888775
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.6e-21 Score=223.34 Aligned_cols=193 Identities=21% Similarity=0.221 Sum_probs=157.8
Q ss_pred cccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC
Q 038611 452 REHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP 531 (837)
Q Consensus 452 ~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 531 (837)
+..+..+|.. ....++++++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+|
T Consensus 14 ~~~l~~ip~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCSSCCSC--CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCcccccccc--CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccC
Confidence 3456677764 2368999999999999998777899999999999999 778888777899999999999999999888
Q ss_pred hh-hhcccccceecccCccccC-CCc-cccccCCCCEEeccCCc-Ccccc-ccccCCCCCCEEeccCCCCCCCCCCcccC
Q 038611 532 NS-VSDLMNLISLLLQRCRRLK-RVP-SVAKLLALQHLDLRGTS-IEEVP-EGMQMLENLSHLYLYSPPLKELPAGLLPR 606 (837)
Q Consensus 532 ~~-i~~l~~L~~L~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~ 606 (837)
.. ++.+++|++|++++|.... ..| .++++++|++|++++|. +..+| ..+.++++|++|++++|.+....+..++.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 65 9999999999999975332 345 69999999999999996 77787 47899999999999999988644444899
Q ss_pred CccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 607 LRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 607 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
+++|++|++.. +.........+..+ ++|+.|+++.|.+..+
T Consensus 171 l~~L~~L~l~~-n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 171 IRDIHHLTLHL-SESAFLLEIFADIL-SSVRYLELRDTNLARF 211 (549)
T ss_dssp CSEEEEEEEEC-SBSTTHHHHHHHST-TTBSEEEEESCBCTTC
T ss_pred cccCceEeccc-CcccccchhhHhhc-ccccEEEccCCccccc
Confidence 99999999943 33332222334567 9999999999887653
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.4e-21 Score=226.40 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=124.5
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. .+..++++++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+
T Consensus 20 ~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCSSCCTT--SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCcccCcCC--CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCccccc
Confidence 34456667753 3457899999999999988877889999999999998 67777666678999999999999998765
Q ss_pred -ChhhhcccccceecccCccccCCC-c-cccccCCCCEEeccCCcCcccc-ccccCCCCCCEEeccCCCCCCCCCCcccC
Q 038611 531 -PNSVSDLMNLISLLLQRCRRLKRV-P-SVAKLLALQHLDLRGTSIEEVP-EGMQMLENLSHLYLYSPPLKELPAGLLPR 606 (837)
Q Consensus 531 -p~~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~ 606 (837)
|..++.+++|++|++++|. ++.+ | .++++++|++|++++|.+..++ +.+..+++|++|++++|.+..+++..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 6788899999999999864 5555 4 6888888999999888887753 33444788888888888777765554666
Q ss_pred CccCc--EEEc
Q 038611 607 LRKLC--RLSL 615 (837)
Q Consensus 607 l~~L~--~L~l 615 (837)
+++|+ .|++
T Consensus 176 l~~L~~l~L~l 186 (606)
T 3t6q_A 176 LQQATNLSLNL 186 (606)
T ss_dssp TTTCCSEEEEC
T ss_pred hcccceeEEec
Confidence 77776 5555
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.9e-21 Score=212.54 Aligned_cols=299 Identities=19% Similarity=0.167 Sum_probs=153.1
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceec
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLL 544 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~ 544 (837)
.+++.+++.++.+..+|...+..+++|++|++++| .+..++...|..+++|++|+|++|.+..+| ..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666666555555666666666666 455555545566666666666666665553 3356666666666
Q ss_pred ccCccccCCCc-c-ccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchh
Q 038611 545 LQRCRRLKRVP-S-VAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEA 621 (837)
Q Consensus 545 L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~ 621 (837)
+++| .++.+| . +.++++|++|++++|.+..++. .+..+++|++|++++|.+..++ ++.+++|+.|++. .+..
T Consensus 124 L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~-~n~l 198 (390)
T 3o6n_A 124 LERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS-YNLL 198 (390)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECC-SSCC
T ss_pred CCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecc-cccc
Confidence 6664 344555 3 4566666666666666655543 3566666666666666665553 3455666666662 2221
Q ss_pred hhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCC---CCccccceeeeccchhhhhccCCC
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVG---DSVIADLEVDRSVCLIANKICEKE 698 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~---~~~~~~~~l~l~~~~~~~~~~~~~ 698 (837)
.. +... .+|+.|+++.|.+..++.. ...+|..+.+..+..... .....++.+.++++..... ..
T Consensus 199 ~~-----~~~~-~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~~ 265 (390)
T 3o6n_A 199 ST-----LAIP-IAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MY 265 (390)
T ss_dssp SE-----EECC-SSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---ES
T ss_pred cc-----cCCC-CcceEEECCCCeeeecccc----ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc---Ch
Confidence 11 1222 4566666666655443221 112344443332222111 1112233333333210000 00
Q ss_pred CcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccch
Q 038611 699 KPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSI 778 (837)
Q Consensus 699 ~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l 778 (837)
..+..+++|+.|+++++. +..++.. ...++ +|+.|++++| .+..+++ .+..+++|+.|++++|+ +
T Consensus 266 ~~~~~l~~L~~L~L~~n~-l~~~~~~---------~~~l~-~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i 330 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNR-LVALNLY---------GQPIP-TLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-I 330 (390)
T ss_dssp GGGTTCSSCCEEECCSSC-CCEEECS---------SSCCT-TCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-C
T ss_pred hHccccccCCEEECCCCc-CcccCcc---------cCCCC-CCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-c
Confidence 112234445555554432 1111111 12455 7777777776 4555543 34566777777777763 4
Q ss_pred hhhhccccchhhhhcccccccccccCCCcceEeccccc
Q 038611 779 EEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLP 816 (837)
Q Consensus 779 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p 816 (837)
..+ ....+++|+.|+++++|
T Consensus 331 ~~~------------------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTL------------------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCC------------------CCCTTCCCSEEECCSSC
T ss_pred cee------------------CchhhccCCEEEcCCCC
Confidence 433 23457777777777764
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=9.7e-21 Score=214.36 Aligned_cols=308 Identities=18% Similarity=0.184 Sum_probs=227.9
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-Chhhhcccccceeccc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQ 546 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 546 (837)
-+.+....+.+..+|.... +++++|++++| .+..++...|.++++|++|+|++|.+..+ |..+.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~---~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP---TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC---TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC---CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 3567778888898987543 68999999999 78888877789999999999999999877 7889999999999999
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhh
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALE 623 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 623 (837)
+| .++.+| .+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..++...++++++|++|++ ..+....
T Consensus 89 ~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~ 166 (477)
T 2id5_A 89 SN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL-EKCNLTS 166 (477)
T ss_dssp SS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE-ESCCCSS
T ss_pred CC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC-CCCcCcc
Confidence 95 577777 489999999999999988876 457899999999999999999887766999999999999 5555665
Q ss_pred hhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccC
Q 038611 624 ETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVL 703 (837)
Q Consensus 624 ~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 703 (837)
.....+..+ ++|+.|+++.|.+...+... .... ..++.+.++++.....+... ...
T Consensus 167 ~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~-~~~l-------------------~~L~~L~l~~~~~~~~~~~~---~~~ 222 (477)
T 2id5_A 167 IPTEALSHL-HGLIVLRLRHLNINAIRDYS-FKRL-------------------YRLKVLEISHWPYLDTMTPN---CLY 222 (477)
T ss_dssp CCHHHHTTC-TTCCEEEEESCCCCEECTTC-SCSC-------------------TTCCEEEEECCTTCCEECTT---TTT
T ss_pred cChhHhccc-CCCcEEeCCCCcCcEeChhh-cccC-------------------cccceeeCCCCccccccCcc---ccc
Confidence 566778899 99999999998776533211 1111 22344455544333222211 112
Q ss_pred CCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhc
Q 038611 704 PEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVA 783 (837)
Q Consensus 704 ~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~ 783 (837)
..+|+.|+++++. +..++... ...++ +|+.|+|++| .++.+++ ..+..+++|++|++++| .+..+..
T Consensus 223 ~~~L~~L~l~~n~-l~~~~~~~--------~~~l~-~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~ 289 (477)
T 2id5_A 223 GLNLTSLSITHCN-LTAVPYLA--------VRHLV-YLRFLNLSYN-PISTIEG-SMLHELLRLQEIQLVGG-QLAVVEP 289 (477)
T ss_dssp TCCCSEEEEESSC-CCSCCHHH--------HTTCT-TCCEEECCSS-CCCEECT-TSCTTCTTCCEEECCSS-CCSEECT
T ss_pred CccccEEECcCCc-ccccCHHH--------hcCcc-ccCeeECCCC-cCCccCh-hhccccccCCEEECCCC-ccceECH
Confidence 3489999998875 33333110 23566 9999999997 4666643 45678999999999988 4554422
Q ss_pred cccchhhhhcccccccccccCCCcceEecccccccccccCCCCc-ccCCCCccC
Q 038611 784 VEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCSDNGV-LVCDPLQEI 836 (837)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~~~~~-~~~~sL~~l 836 (837)
.....+++|+.|+|+++ .+..+.. .. ..+++|++|
T Consensus 290 ---------------~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L 325 (477)
T 2id5_A 290 ---------------YAFRGLNYLRVLNVSGN-QLTTLEE--SVFHSVGNLETL 325 (477)
T ss_dssp ---------------TTBTTCTTCCEEECCSS-CCSCCCG--GGBSCGGGCCEE
T ss_pred ---------------HHhcCcccCCEEECCCC-cCceeCH--hHcCCCcccCEE
Confidence 14567899999999986 5666654 22 235666654
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.9e-21 Score=224.73 Aligned_cols=319 Identities=12% Similarity=0.070 Sum_probs=234.3
Q ss_pred CCchhh--hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCcc--ccChhHhhcC------CCCcEEEecCCCC
Q 038611 458 FPGEQE--WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQ--WIPECFFAHM------HGLKILNLSFTAI 527 (837)
Q Consensus 458 ~p~~~~--~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l------~~L~~L~L~~~~i 527 (837)
+|.... ...+++.+++.+|.+....+..+..+++|++|++++|..+. .+|..+ ..+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcC
Confidence 676655 66789999999998766544566899999999999995255 477765 554 9999999999999
Q ss_pred cccCh--hhhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCC-CCEEeccCCCCCCCCCCcc
Q 038611 528 EVLPN--SVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLEN-LSHLYLYSPPLKELPAGLL 604 (837)
Q Consensus 528 ~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~-L~~L~l~~~~l~~~p~~~l 604 (837)
..+|. .++.+++|++|++++|.....+|.++.+++|++|++++|.+..+|..+..+++ |++|++++|.+..+|.. +
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~-~ 396 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI-F 396 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC-C
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh-h
Confidence 99998 89999999999999976544888889999999999999999999999999999 99999999999999876 5
Q ss_pred cCCc--cCcEEEccccchhhhhhHHHHh-------hhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCC
Q 038611 605 PRLR--KLCRLSLYFGWEALEETVEETG-------RLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGD 675 (837)
Q Consensus 605 ~~l~--~L~~L~l~~~~~~~~~~~~~l~-------~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 675 (837)
+.++ +|+.|++ ..+......+..+. .+ .+|+.|+++.|.+..++..... ...+|..+.+..+.....+
T Consensus 397 ~~~~l~~L~~L~L-s~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~-~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 397 DAKSVSVMSAIDF-SYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFS-TGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CTTCSSCEEEEEC-CSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHH-TTCCCSEEECCSSCCSBCC
T ss_pred hhcccCccCEEEC-cCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHc-cCCCCCEEECCCCCCCCcC
Confidence 6654 8999999 55555544444455 56 7899999999988766543321 2344666665554443222
Q ss_pred Cc------------cccceeeeccchhhhhccCCCCccc--CCCCCcEEEEeeecchhhhhhcccccccccccccccccc
Q 038611 676 SV------------IADLEVDRSVCLIANKICEKEKPIV--LPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDL 741 (837)
Q Consensus 676 ~~------------~~~~~l~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L 741 (837)
.. ..++.+.++++... .+ ...+. .+++|+.|+++++.-. .+|..+ ..++ +|
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l---p~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~---------~~l~-~L 538 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KL---SDDFRATTLPYLVGIDLSYNSFS-KFPTQP---------LNSS-TL 538 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BC---CGGGSTTTCTTCCEEECCSSCCS-SCCCGG---------GGCS-SC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-cc---ChhhhhccCCCcCEEECCCCCCC-CcChhh---------hcCC-CC
Confidence 11 15566666665221 11 11122 6789999999887533 354432 3566 99
Q ss_pred cEEEEecC------CCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccc
Q 038611 742 KVLRFYYC------NNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYL 815 (837)
Q Consensus 742 ~~L~l~~c------~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 815 (837)
+.|+|++| .....+| ..+..+++|++|++++|. +..++. . .+|+|+.|+|+++
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~-l~~ip~----------------~--~~~~L~~L~Ls~N 597 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWP--EGITLCPSLTQLQIGSND-IRKVNE----------------K--ITPNISVLDIKDN 597 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCC--TTGGGCSSCCEEECCSSC-CCBCCS----------------C--CCTTCCEEECCSC
T ss_pred CEEECCCCcccccCcccccCh--HHHhcCCCCCEEECCCCc-CCccCH----------------h--HhCcCCEEECcCC
Confidence 99999653 3344443 256789999999999994 566643 1 2489999999998
Q ss_pred cc
Q 038611 816 PE 817 (837)
Q Consensus 816 p~ 817 (837)
|-
T Consensus 598 ~l 599 (636)
T 4eco_A 598 PN 599 (636)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=7.6e-21 Score=220.98 Aligned_cols=298 Identities=20% Similarity=0.169 Sum_probs=133.9
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L 545 (837)
+++.+++.+|.+..+|+..+..+++|++|++++| .+..+++..|..+++|++|+|++|.+..+|. .++.+++|++|+|
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3444555555555554444444555555555554 3444444344555555555555555544432 2345555555555
Q ss_pred cCccccCCCc-c-ccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhh
Q 038611 546 QRCRRLKRVP-S-VAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEAL 622 (837)
Q Consensus 546 ~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 622 (837)
++| .++.+| . ++++++|++|++++|.+..+|+ .++.+++|++|++++|.+..++ ++.+++|+.|++. .+...
T Consensus 131 ~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~-~n~l~ 205 (597)
T 3oja_B 131 ERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS-YNLLS 205 (597)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC-SSCCS
T ss_pred eCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc-cCccc
Confidence 553 233444 2 3455555555555554444433 3445555555555555544443 2344445555552 11111
Q ss_pred hhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcC---CCCccccceeeeccchhhhhccCCCC
Q 038611 623 EETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYV---GDSVIADLEVDRSVCLIANKICEKEK 699 (837)
Q Consensus 623 ~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~---~~~~~~~~~l~l~~~~~~~~~~~~~~ 699 (837)
. +... .+|+.|+++.|.+..++... ..+|..+.+..+.+.. ......+..+.++++..... ...
T Consensus 206 ~-----l~~~-~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~ 272 (597)
T 3oja_B 206 T-----LAIP-IAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYH 272 (597)
T ss_dssp E-----EECC-TTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---ESG
T ss_pred c-----ccCC-chhheeeccCCccccccccc----CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC---CHH
Confidence 1 1122 44555555555443322111 1123333332221111 01111222233322210000 000
Q ss_pred cccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchh
Q 038611 700 PIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIE 779 (837)
Q Consensus 700 ~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~ 779 (837)
.+..+++|+.|+++++. +..++.. ...++ +|+.|+|++| .+..+|+ .+..+++|+.|++++|. +.
T Consensus 273 ~~~~l~~L~~L~Ls~N~-l~~l~~~---------~~~l~-~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~ 337 (597)
T 3oja_B 273 PFVKMQRLERLYISNNR-LVALNLY---------GQPIP-TLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IV 337 (597)
T ss_dssp GGTTCSSCCEEECTTSC-CCEEECS---------SSCCT-TCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CC
T ss_pred HhcCccCCCEEECCCCC-CCCCCcc---------cccCC-CCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CC
Confidence 12233444444444332 1111111 12455 7778887776 4555543 34667778888887773 43
Q ss_pred hhhccccchhhhhcccccccccccCCCcceEeccccc
Q 038611 780 EIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLP 816 (837)
Q Consensus 780 ~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p 816 (837)
.+ ....+|+|+.|+|+++|
T Consensus 338 ~~------------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 TL------------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CC------------------CCCTTCCCSEEECCSSC
T ss_pred Cc------------------ChhhcCCCCEEEeeCCC
Confidence 33 34567888888888765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=217.04 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=114.1
Q ss_pred cccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC
Q 038611 452 REHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP 531 (837)
Q Consensus 452 ~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 531 (837)
+..+..+|... ..+++++++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+|
T Consensus 9 ~n~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 9 KNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp TSCCSSCCCSC--CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred CCCcccccccc--cccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 34556677542 368999999999999888766788999999999999 677776666799999999999999999998
Q ss_pred hhhhcccccceecccCccccC-CCc-cccccCCCCEEeccCCcCccccccccCCCCC--CEEeccCCCC
Q 038611 532 NSVSDLMNLISLLLQRCRRLK-RVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENL--SHLYLYSPPL 596 (837)
Q Consensus 532 ~~i~~l~~L~~L~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~l 596 (837)
.. .+++|++|++++|.... .+| .++++++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 76 89999999999976444 467 79999999999999998775 356777778 9999988876
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=5.1e-21 Score=229.10 Aligned_cols=176 Identities=26% Similarity=0.212 Sum_probs=98.0
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc-cChhhhcccccceec
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV-LPNSVSDLMNLISLL 544 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~ 544 (837)
.+++.+++.+|.+...++. +..+++|++|++++| .+....+..|..+++|++|++++|.+.. +|. . .+++|++|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCc-c-ccCCCCEEE
Confidence 4566666666666554433 456666666666666 3332222334666666666666666542 232 2 566666666
Q ss_pred ccCccccCCCc-ccccc-CCCCEEeccCCcCc-cccccccCCCCCCEEeccCCCCC-CCCCCcccCCccCcEEEccccch
Q 038611 545 LQRCRRLKRVP-SVAKL-LALQHLDLRGTSIE-EVPEGMQMLENLSHLYLYSPPLK-ELPAGLLPRLRKLCRLSLYFGWE 620 (837)
Q Consensus 545 L~~~~~l~~lp-~~~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~~p~~~l~~l~~L~~L~l~~~~~ 620 (837)
+++|.....+| .+..+ ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|...++++++|++|++ ..+.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L-s~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL-SFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC-CSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC-cCCc
Confidence 66655444555 44443 66666666666554 45556666666666666666654 555444566666666666 3333
Q ss_pred hhhhhHHHHhhhhh-ccCeeEEeecccc
Q 038611 621 ALEETVEETGRLSD-RLDTFEGHFSKLN 647 (837)
Q Consensus 621 ~~~~~~~~l~~l~~-~L~~L~l~~~~~~ 647 (837)
.....+..+..+ . +|+.|+++.|.+.
T Consensus 355 l~~~~p~~l~~l-~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 355 FSGELPESLTNL-SASLLTLDLSSNNFS 381 (768)
T ss_dssp EEECCCTTHHHH-TTTCSEEECCSSEEE
T ss_pred cCccccHHHHhh-hcCCcEEEccCCCcC
Confidence 333333444455 4 5666666655543
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.9e-20 Score=218.80 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=139.8
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-Chhhhcccccceeccc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQ 546 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 546 (837)
-..++..++.++.+|.... ++|++|++++| .+..++...|.++++|++|+|++|.+..+ |..+.++++|++|+|+
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP---SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCCCCC---CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 4568888899999987653 78999999999 78888887789999999999999999987 5678999999999999
Q ss_pred CccccCCCc-cccccCCCCEEeccCCcCcccc-ccccCCCCCCEEeccCCCCCC--CCCCcccCCccCcEEEccccchhh
Q 038611 547 RCRRLKRVP-SVAKLLALQHLDLRGTSIEEVP-EGMQMLENLSHLYLYSPPLKE--LPAGLLPRLRKLCRLSLYFGWEAL 622 (837)
Q Consensus 547 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~~ 622 (837)
+|......| .++++++|++|++++|.+..+| ..++++++|++|++++|.+.. +|.. ++++++|++|++ ..+...
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~L-s~n~l~ 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDL-SYNYIQ 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEEC-CSSCCC
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEc-cCCcce
Confidence 976444447 7999999999999999998887 678999999999999999874 5666 899999999999 444443
Q ss_pred hhhHHHHhhhhhcc----CeeEEeeccccch
Q 038611 623 EETVEETGRLSDRL----DTFEGHFSKLNNF 649 (837)
Q Consensus 623 ~~~~~~l~~l~~~L----~~L~l~~~~~~~~ 649 (837)
......++.+ .+| ..|+++.|.+..+
T Consensus 167 ~~~~~~~~~l-~~L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 167 TITVNDLQFL-RENPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp EECTTTTHHH-HHCTTCCCEEECTTCCCCEE
T ss_pred ecChhhhhhh-hccccccceeeccCCCccee
Confidence 3333333344 333 3566666655443
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=227.47 Aligned_cols=330 Identities=19% Similarity=0.180 Sum_probs=215.7
Q ss_pred eccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc
Q 038611 450 KAREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV 529 (837)
Q Consensus 450 ~~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 529 (837)
..+..+..+|. .+.+++++++++|.+..+++..+..+++|++|++++|.....+++..|.++++|++|+|++|.+..
T Consensus 11 cs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 11 YRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp ESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred ccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 34556677776 557899999999999999888889999999999999977778877778999999999999999987
Q ss_pred c-ChhhhcccccceecccCccccCCCc-c--ccccCCCCEEeccCCcCcccc--ccccCCCCCCEEeccCCCCCCCCCCc
Q 038611 530 L-PNSVSDLMNLISLLLQRCRRLKRVP-S--VAKLLALQHLDLRGTSIEEVP--EGMQMLENLSHLYLYSPPLKELPAGL 603 (837)
Q Consensus 530 l-p~~i~~l~~L~~L~L~~~~~l~~lp-~--~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~~~ 603 (837)
+ |..++++++|++|+|++|.....+| . ++++++|++|++++|.+..++ ..++++++|++|++++|.+..+....
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 6 7899999999999999976555555 4 899999999999999888763 56899999999999999988766555
Q ss_pred ccCC--ccCcEEEccccchhhhhhHHHHhhhhh------ccCeeEEeeccccc-hhh-hhhcccCCccceEEEEeccC--
Q 038611 604 LPRL--RKLCRLSLYFGWEALEETVEETGRLSD------RLDTFEGHFSKLNN-FNI-YVKSSDGRESEKYCLMLSPD-- 671 (837)
Q Consensus 604 l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~------~L~~L~l~~~~~~~-~~~-~~~~~~~~~L~~~~~~~~~~-- 671 (837)
++.+ ++|+.|++. .+.........++.+ . +|+.|+++.|.+.. .+. ........++..+.+.....
T Consensus 168 l~~l~~~~L~~L~L~-~n~l~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLA-ANSLYSRVSVDWGKC-MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GHHHHHCSSCCCEEC-CSBSCCCCCCCCCSS-SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred cccccCCccceEECC-CCccccccccchhhc-CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 7777 789999994 333332222222222 2 38899998886542 111 11111222233332220000
Q ss_pred -c-------------CCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccc
Q 038611 672 -Y-------------VGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKF 737 (837)
Q Consensus 672 -~-------------~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~ 737 (837)
. .......++.+.++++..... ....+..+++|+.|++.++......+..+ ..+
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---------~~l 313 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL---NSRVFETLKDLKVLNLAYNKINKIADEAF---------YGL 313 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE---CSCCSSSCCCCCEEEEESCCCCEECTTTT---------TTC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCccccc---ChhhhhcCCCCCEEECCCCcCCCCChHHh---------cCC
Confidence 0 000012344455544411100 11224556778888887665322222222 245
Q ss_pred cccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccc
Q 038611 738 SHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYL 815 (837)
Q Consensus 738 ~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 815 (837)
+ +|++|++++| .+..+++ ..+..+++|+.|++++| .+..++. .....+++|+.|+|+++
T Consensus 314 ~-~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~---------------~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 314 D-NLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HIAIIQD---------------QTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp S-SCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CCCCCCS---------------SCSCSCCCCCEEEEETC
T ss_pred C-CCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CCCccCh---------------hhhcCCCCCCEEECCCC
Confidence 5 7777777776 4444422 34566777777777776 4444422 12344566666666654
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=3.6e-20 Score=208.73 Aligned_cols=172 Identities=22% Similarity=0.303 Sum_probs=100.7
Q ss_pred hhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccce
Q 038611 463 EWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLIS 542 (837)
Q Consensus 463 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 542 (837)
....+++.+++++|.+..+++ +..+++|++|++++| .+..++. +.++++|++|++++|.+..+|. +..+++|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 334567777777777776655 566777777777776 4555554 5677777777777777766664 677777777
Q ss_pred ecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhh
Q 038611 543 LLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEAL 622 (837)
Q Consensus 543 L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 622 (837)
|++++|. +..+|.++++++|++|++.+ .+..++. +.++++|++|++++|.+..++. +..+++|+.|++. .+...
T Consensus 139 L~l~~n~-l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~-~n~l~ 212 (466)
T 1o6v_A 139 LELSSNT-ISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT-NNQIS 212 (466)
T ss_dssp EEEEEEE-ECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECC-SSCCC
T ss_pred EECCCCc-cCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCcCCCChh--hccCCCCCEEEec-CCccc
Confidence 7777643 44455555555555555542 2333322 5556666666666666555532 5566666666662 22222
Q ss_pred hhhHHHHhhhhhccCeeEEeeccccch
Q 038611 623 EETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 623 ~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
.... ++.+ ++|+.|+++.|.+..+
T Consensus 213 ~~~~--~~~l-~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 213 DITP--LGIL-TNLDELSLNGNQLKDI 236 (466)
T ss_dssp CCGG--GGGC-TTCCEEECCSSCCCCC
T ss_pred cccc--cccc-CCCCEEECCCCCcccc
Confidence 1111 4445 5666666665555443
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=5.8e-21 Score=228.60 Aligned_cols=180 Identities=25% Similarity=0.266 Sum_probs=114.9
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc-ccChhhhccc-cccee
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE-VLPNSVSDLM-NLISL 543 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L 543 (837)
.+++.+++.+|.+....+..+..+++|++|++++|.....+|...|..+++|++|++++|.+. .+|..+..+. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 567788888877765545556777888888888874334677776678888888888888766 6777777776 77777
Q ss_pred cccCccccCCCc-cccc--cCCCCEEeccCCcCc-cccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccc
Q 038611 544 LLQRCRRLKRVP-SVAK--LLALQHLDLRGTSIE-EVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGW 619 (837)
Q Consensus 544 ~L~~~~~l~~lp-~~~~--l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~ 619 (837)
++++|.....+| .+.. +++|++|++++|.+. .+|..++++++|++|++++|.+....+..++++++|+.|++ ..+
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L-~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL-WLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC-CSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC-CCC
Confidence 777765444444 4444 556666666666554 45666666666666666666655322222566666666666 333
Q ss_pred hhhhhhHHHHhhhhhccCeeEEeecccc
Q 038611 620 EALEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 620 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
......+..+..+ ++|+.|+++.|.+.
T Consensus 453 ~l~~~~p~~~~~l-~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 453 MLEGEIPQELMYV-KTLETLILDFNDLT 479 (768)
T ss_dssp CCCSCCCGGGGGC-TTCCEEECCSSCCC
T ss_pred cccCcCCHHHcCC-CCceEEEecCCccc
Confidence 3333334445555 66666666666554
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1.2e-20 Score=207.47 Aligned_cols=296 Identities=13% Similarity=0.111 Sum_probs=222.1
Q ss_pred CCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecccCccccCCC-c-cccccCCCC
Q 038611 488 HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQRCRRLKRV-P-SVAKLLALQ 564 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~ 564 (837)
.++++++|+++++ .+..+|..+|..+++|++|+|++|.+..+|. .+..+++|++|++++|. ++.+ | .++++++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 4689999999998 7899999999999999999999999998874 88999999999999975 5555 4 589999999
Q ss_pred EEeccCCcCccccccc-cCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEee
Q 038611 565 HLDLRGTSIEEVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHF 643 (837)
Q Consensus 565 ~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 643 (837)
+|++++|.+..+|..+ .++++|++|++++|.+..+++..++++++|++|++ ..+..... .+..+ ++|+.|+++.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~~---~~~~l-~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL-SSNRLTHV---DLSLI-PSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC-CSSCCSBC---CGGGC-TTCSEEECCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC-CCCcCCcc---ccccc-cccceeeccc
Confidence 9999999999999875 89999999999999999888777899999999999 44444333 25667 8999999998
Q ss_pred ccccchhhhhhcccCCccceEEEEeccCcC--CCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhh
Q 038611 644 SKLNNFNIYVKSSDGRESEKYCLMLSPDYV--GDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASL 721 (837)
Q Consensus 644 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 721 (837)
+.+..++. ...+..+.+..+.... ......++.+.++++.. .. ...+..+++|+.|+++++......
T Consensus 196 n~l~~~~~------~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l----~~-~~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 196 NLLSTLAI------PIAVEELDASHNSINVVRGPVNVELTILKLQHNNL----TD-TAWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp SCCSEEEC------CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC----CC-CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccccccCC------CCcceEEECCCCeeeeccccccccccEEECCCCCC----cc-cHHHcCCCCccEEECCCCcCCCcC
Confidence 87765322 1234555444333211 11123466677766521 11 133567899999999888633322
Q ss_pred hhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhccccccccc
Q 038611 722 NDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINI 801 (837)
Q Consensus 722 ~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 801 (837)
+..+ ..++ +|+.|++++| .++.++. .+..+++|++|++++| .+..++. .+
T Consensus 265 ~~~~---------~~l~-~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~----------------~~ 314 (390)
T 3o6n_A 265 YHPF---------VKMQ-RLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER----------------NQ 314 (390)
T ss_dssp SGGG---------TTCS-SCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG----------------GH
T ss_pred hhHc---------cccc-cCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCc----------------cc
Confidence 3332 3566 9999999996 6777644 3467899999999999 5666643 34
Q ss_pred ccCCCcceEecccccccccccCCCCcccCCCCccC
Q 038611 802 LTLPRLKKLEFHYLPEFKTFCSDNGVLVCDPLQEI 836 (837)
Q Consensus 802 ~~~p~L~~L~L~~~p~L~~i~~~~~~~~~~sL~~l 836 (837)
..+|+|+.|+|++++ +..++. ..+++|+.|
T Consensus 315 ~~l~~L~~L~L~~N~-i~~~~~----~~~~~L~~L 344 (390)
T 3o6n_A 315 PQFDRLENLYLDHNS-IVTLKL----STHHTLKNL 344 (390)
T ss_dssp HHHTTCSEEECCSSC-CCCCCC----CTTCCCSEE
T ss_pred cccCcCCEEECCCCc-cceeCc----hhhccCCEE
Confidence 568999999999975 677754 235667665
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=5.5e-20 Score=214.90 Aligned_cols=180 Identities=22% Similarity=0.218 Sum_probs=110.0
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCc--EEEecCCCCcccChhhhccc----
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLK--ILNLSFTAIEVLPNSVSDLM---- 538 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~i~~lp~~i~~l~---- 538 (837)
..+++.+++.+|.+..++...+..+++|++|++++| .+..++...|..+++|+ .|++++|.+..++.......
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 356777777777777654333344777777777777 56666666667777777 67777777665543332222
Q ss_pred ------------------------------------------------ccceecccCccccCCCc--cccccCCCCEEec
Q 038611 539 ------------------------------------------------NLISLLLQRCRRLKRVP--SVAKLLALQHLDL 568 (837)
Q Consensus 539 ------------------------------------------------~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l 568 (837)
+|+.|++++| .++.+| .+.++++|++|++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEEC
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEec
Confidence 3444444443 233343 3666777777777
Q ss_pred cCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhh-hhhHHHHhhhhhccCeeEEeecccc
Q 038611 569 RGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEAL-EETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 569 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
++|.+..+|..+..+++|++|++++|.+..+++..++++++|++|++.. +... ......+..+ ++|+.|+++.|.+.
T Consensus 286 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG-NTKRLELGTGCLENL-ENLRELDLSHDDIE 363 (606)
T ss_dssp TTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS-CSSCCBCCSSTTTTC-TTCCEEECCSSCCC
T ss_pred cCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC-CCcccccchhhhhcc-CcCCEEECCCCccc
Confidence 7777777777777777777777777776666444466777777777733 2222 1122235556 67777777766655
Q ss_pred c
Q 038611 648 N 648 (837)
Q Consensus 648 ~ 648 (837)
.
T Consensus 364 ~ 364 (606)
T 3t6q_A 364 T 364 (606)
T ss_dssp E
T ss_pred c
Confidence 4
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=6e-20 Score=206.91 Aligned_cols=321 Identities=15% Similarity=0.186 Sum_probs=214.9
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
..+++.+++.++.+..++. +..+++|++|++++| .+..+++ +.++++|++|++++|.+..++. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc--hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 3579999999999988874 578999999999999 6777876 6999999999999999998886 99999999999
Q ss_pred ccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 545 LQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 545 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
+++| .++.+|.+.++++|++|++++|.+..+| .+..+++|++|+++ +.+..++. ++++++|+.|++.. +....
T Consensus 119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~-n~l~~- 191 (466)
T 1o6v_A 119 LFNN-QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS-NKVSD- 191 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCS-SCCCC-
T ss_pred CCCC-CCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcC-CcCCC-
Confidence 9996 5777777999999999999999988887 48999999999996 44555543 78999999999944 33332
Q ss_pred hHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCC---CCccccceeeeccchhhhhccCCCCcc
Q 038611 625 TVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVG---DSVIADLEVDRSVCLIANKICEKEKPI 701 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~---~~~~~~~~l~l~~~~~~~~~~~~~~~~ 701 (837)
+..+..+ ++|+.|+++.|.+..... .....+|..+.+..+..... .....++.+.++++.... ...+
T Consensus 192 -~~~l~~l-~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~ 261 (466)
T 1o6v_A 192 -ISVLAKL-TNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-----LAPL 261 (466)
T ss_dssp -CGGGGGC-TTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-----CGGG
T ss_pred -ChhhccC-CCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-----chhh
Confidence 2347788 999999999998776543 22244566666554433221 123345555555542111 1114
Q ss_pred cCCCCCcEEEEeeecchhhhhh--cccccccc----------cccccccccccEEEEecCCCCCcchhhhhhhhcCCccE
Q 038611 702 VLPEDVQCLEMFEVYDIASLND--VLPREQGL----------VNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLEC 769 (837)
Q Consensus 702 ~~~~~L~~L~l~~~~~~~~l~~--~~~~L~~L----------~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~ 769 (837)
..+++|+.|+++++.- ..++. .+++|+.| .....++ +|+.|++++| .+..+++ +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~L~~n-~l~~~~~---~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLK-NLTYLTLYFN-NISDISP---VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT-TCSEEECCSS-CCSCCGG---GGGCTTCCE
T ss_pred hcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCcccCchhhcCCC-CCCEEECcCC-cCCCchh---hccCccCCE
Confidence 4567777777766642 11211 11111111 1123444 5666666665 3444433 345556666
Q ss_pred EEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccccccccccCCCCcccCCCCccC
Q 038611 770 LEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCSDNGVLVCDPLQEI 836 (837)
Q Consensus 770 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~~~~~~~~~sL~~l 836 (837)
|++++| .+..+. ....+++|+.|++++|+ +..+.. ...+++|+.|
T Consensus 336 L~l~~n-~l~~~~-----------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L 380 (466)
T 1o6v_A 336 LFFYNN-KVSDVS-----------------SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQL 380 (466)
T ss_dssp EECCSS-CCCCCG-----------------GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEE
T ss_pred eECCCC-ccCCch-----------------hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEE
Confidence 666665 333321 34567888888888774 333332 2345666654
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=5.9e-20 Score=217.67 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=140.8
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. ...+++++++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..+
T Consensus 12 s~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCcc
Confidence 34456667754 3368999999999999988877888999999999988 67777777789999999999999999888
Q ss_pred Ch-hhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcccc-ccccCCCCCCEEeccCCCCCCCCCCccc-
Q 038611 531 PN-SVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVP-EGMQMLENLSHLYLYSPPLKELPAGLLP- 605 (837)
Q Consensus 531 p~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~- 605 (837)
|. .++++++|++|++++|. ++.+| .++++++|++|++++|.+..++ ..++++++|++|++++|.+..++...++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence 86 58899999999999865 45554 5889999999999999877654 4578889999999998888777654333
Q ss_pred -CCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeec
Q 038611 606 -RLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 606 -~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 644 (837)
.+++|+.|++. .+.........+..+ .+|+.|.+..+
T Consensus 168 ~~~~~L~~L~L~-~n~l~~~~~~~~~~l-~~L~~L~l~~~ 205 (680)
T 1ziw_A 168 FANSSLKKLELS-SNQIKEFSPGCFHAI-GRLFGLFLNNV 205 (680)
T ss_dssp GTTCEESEEECT-TCCCCCBCTTGGGGS-SEECEEECTTC
T ss_pred cccccccEEECC-CCcccccChhhhhhh-hhhhhhhcccc
Confidence 45788888883 333333333344444 55555554443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1e-19 Score=196.75 Aligned_cols=298 Identities=15% Similarity=0.174 Sum_probs=223.5
Q ss_pred hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhccccccee
Q 038611 464 WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISL 543 (837)
Q Consensus 464 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 543 (837)
...+++++++.++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..+| .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 34679999999999988864 578999999999999 7777877 699999999999999999886 68999999999
Q ss_pred cccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhh
Q 038611 544 LLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALE 623 (837)
Q Consensus 544 ~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 623 (837)
++++| .+..+|.+..+++|++|++++|.....+..+..+++|++|++++|.+..++. ++.+++|++|++. .+....
T Consensus 116 ~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~-~n~l~~ 191 (347)
T 4fmz_A 116 YLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN-YNQIED 191 (347)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT-TSCCCC
T ss_pred ECcCC-cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc-CCcccc
Confidence 99995 5777777899999999999999444444558999999999999999888766 7899999999994 443332
Q ss_pred hhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccC
Q 038611 624 ETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVL 703 (837)
Q Consensus 624 ~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 703 (837)
.. .+..+ ++|+.|+++.|.+...+. .....+|..+ .++++... .+ ..+..
T Consensus 192 ~~--~~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L-------------------~l~~n~l~-~~----~~~~~ 241 (347)
T 4fmz_A 192 IS--PLASL-TSLHYFTAYVNQITDITP---VANMTRLNSL-------------------KIGNNKIT-DL----SPLAN 241 (347)
T ss_dssp CG--GGGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEE-------------------ECCSSCCC-CC----GGGTT
T ss_pred cc--cccCC-CccceeecccCCCCCCch---hhcCCcCCEE-------------------EccCCccC-CC----cchhc
Confidence 22 27788 999999999887766443 1122334433 33333110 00 01445
Q ss_pred CCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhc
Q 038611 704 PEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVA 783 (837)
Q Consensus 704 ~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~ 783 (837)
+++|+.|++++|. +..++. ...++ +|+.|++++| .++.++ .+..+++|++|++++|. +...+.
T Consensus 242 l~~L~~L~l~~n~-l~~~~~----------~~~l~-~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~ 304 (347)
T 4fmz_A 242 LSQLTWLEIGTNQ-ISDINA----------VKDLT-KLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQ-LGNEDM 304 (347)
T ss_dssp CTTCCEEECCSSC-CCCCGG----------GTTCT-TCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCGGGH
T ss_pred CCCCCEEECCCCc-cCCChh----------HhcCC-CcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCc-CCCcCh
Confidence 7899999998875 222221 23566 9999999998 677663 46788999999999994 443321
Q ss_pred cccchhhhhcccccccccccCCCcceEecccccccccccCCCCcccCCCCccCC
Q 038611 784 VEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCSDNGVLVCDPLQEIE 837 (837)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~~~~~~~~~sL~~l~ 837 (837)
..+..+|+|+.|+|++|+ +..+.. ...+++|++|+
T Consensus 305 ---------------~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 305 ---------------EVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp ---------------HHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEES
T ss_pred ---------------hHhhccccCCEEEccCCc-cccccC---hhhhhccceee
Confidence 135679999999999987 555544 34578888764
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-20 Score=217.64 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=218.3
Q ss_pred CCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCccccCCCc--cccccCCCC
Q 038611 488 HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQ 564 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~ 564 (837)
.+++++.|+++++ .+..+|..+|.++++|++|+|++|.+..+| ..++.+++|++|+|++|. ++.+| .++++++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence 4678999999988 788899999999999999999999998876 488999999999999975 55555 579999999
Q ss_pred EEeccCCcCccccccc-cCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEee
Q 038611 565 HLDLRGTSIEEVPEGM-QMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHF 643 (837)
Q Consensus 565 ~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 643 (837)
+|++++|.+..+|..+ +++++|++|++++|.+..+++..++++++|++|++ ..+..... .++.+ ++|+.|+++.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~N~l~~~---~~~~l-~~L~~L~l~~ 201 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL-SSNRLTHV---DLSLI-PSLFHANVSY 201 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC-TTSCCSBC---CGGGC-TTCSEEECCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC-cCCCCCCc---Chhhh-hhhhhhhccc
Confidence 9999999999999875 89999999999999999888777899999999999 44444333 25567 8899999998
Q ss_pred ccccchhhhhhcccCCccceEEEEeccCcC--CCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhh
Q 038611 644 SKLNNFNIYVKSSDGRESEKYCLMLSPDYV--GDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASL 721 (837)
Q Consensus 644 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l 721 (837)
|.+..++. ...|..+.+..+.+.. ......+..+.++++.. .. ...+..+++|+.|+++++......
T Consensus 202 n~l~~l~~------~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l----~~-~~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 202 NLLSTLAI------PIAVEELDASHNSINVVRGPVNVELTILKLQHNNL----TD-TAWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SCCSEEEC------CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC----CC-CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred CccccccC------CchhheeeccCCcccccccccCCCCCEEECCCCCC----CC-ChhhccCCCCCEEECCCCccCCCC
Confidence 87765322 1234555444333211 11123466777766621 11 233566789999999887643333
Q ss_pred hhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhccccccccc
Q 038611 722 NDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINI 801 (837)
Q Consensus 722 ~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 801 (837)
+..+ +.++ +|+.|+|++| .+..++. .+..+++|+.|++++| .+..++. .+
T Consensus 271 ~~~~---------~~l~-~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~----------------~~ 320 (597)
T 3oja_B 271 YHPF---------VKMQ-RLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER----------------NQ 320 (597)
T ss_dssp SGGG---------TTCS-SCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG----------------GH
T ss_pred HHHh---------cCcc-CCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCc----------------cc
Confidence 3332 3566 9999999996 6777644 3456889999999998 5556643 44
Q ss_pred ccCCCcceEecccccccccccCCCCcccCCCCccC
Q 038611 802 LTLPRLKKLEFHYLPEFKTFCSDNGVLVCDPLQEI 836 (837)
Q Consensus 802 ~~~p~L~~L~L~~~p~L~~i~~~~~~~~~~sL~~l 836 (837)
..+|+|+.|+|++++ +..++. ..+++|+.|
T Consensus 321 ~~l~~L~~L~L~~N~-l~~~~~----~~~~~L~~L 350 (597)
T 3oja_B 321 PQFDRLENLYLDHNS-IVTLKL----STHHTLKNL 350 (597)
T ss_dssp HHHTTCSEEECCSSC-CCCCCC----CTTCCCSEE
T ss_pred ccCCCCCEEECCCCC-CCCcCh----hhcCCCCEE
Confidence 568999999999974 566654 235666654
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=2.2e-19 Score=207.51 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=110.0
Q ss_pred eccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc
Q 038611 450 KAREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV 529 (837)
Q Consensus 450 ~~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 529 (837)
-.+..+..+|.. ...+++.+++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|+|++|.+..
T Consensus 38 ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 114 (562)
T 3a79_B 38 YSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQN 114 (562)
T ss_dssp CTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCccCCCC--CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCc
Confidence 344456667753 3368899999999999888777788999999999988 6777877777889999999999999988
Q ss_pred cChhhhcccccceecccCccccCC--Cc-cccccCCCCEEeccCCcCccccccccCCCCC--CEEeccCCCC
Q 038611 530 LPNSVSDLMNLISLLLQRCRRLKR--VP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENL--SHLYLYSPPL 596 (837)
Q Consensus 530 lp~~i~~l~~L~~L~L~~~~~l~~--lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~l 596 (837)
+|.. .+++|++|++++|. ++. +| .++++++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 115 lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred cCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 8876 88999999999865 444 34 68899999999999987765 245556666 8888888876
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.3e-20 Score=201.50 Aligned_cols=220 Identities=24% Similarity=0.321 Sum_probs=169.8
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
..++.+++.+|.+..+|..+ ..+++|++|++++| .+..+|..+ ..+++|++|+|++|.+..+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n-~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAA-GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESS-CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhh-hhCCCCCEEECCCC-CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46889999999999998765 56999999999999 566888765 8999999999999999999999999999999999
Q ss_pred cCccccCCCc-cccc---------cCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 546 QRCRRLKRVP-SVAK---------LLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~---------l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
++|+.++.+| .++. +++|++|++++|.+..+|..++++++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEEC
Confidence 9999888888 6654 9999999999999889999999999999999999998888776 677777777777
Q ss_pred cccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhcc
Q 038611 616 YFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKIC 695 (837)
Q Consensus 616 ~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 695 (837)
.. +......+..
T Consensus 237 s~-n~~~~~~p~~------------------------------------------------------------------- 248 (328)
T 4fcg_A 237 RG-CTALRNYPPI------------------------------------------------------------------- 248 (328)
T ss_dssp TT-CTTCCBCCCC-------------------------------------------------------------------
T ss_pred cC-CcchhhhHHH-------------------------------------------------------------------
Confidence 22 1111111111
Q ss_pred CCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEecc
Q 038611 696 EKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCG 774 (837)
Q Consensus 696 ~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 774 (837)
+..+++|+.|++++|.....+|..+ ..++ +|+.|+|++|+.+..+|. .+..|++|+.+.+..
T Consensus 249 -----~~~l~~L~~L~L~~n~~~~~~p~~~---------~~l~-~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 249 -----FGGRAPLKRLILKDCSNLLTLPLDI---------HRLT-QLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp -----TTCCCCCCEEECTTCTTCCBCCTTG---------GGCT-TCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred -----hcCCCCCCEEECCCCCchhhcchhh---------hcCC-CCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 1124566677776666555454432 2455 788888888877777754 567777888777764
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=2.8e-20 Score=214.65 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=102.5
Q ss_pred hhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc--cChhhhcccc
Q 038611 462 QEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV--LPNSVSDLMN 539 (837)
Q Consensus 462 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~ 539 (837)
.....+++.+++.+|.+..+++..+..+++|++|++++| .+..+++..|+++++|++|++++|.+.. .|..++++++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 344568999999999999998878899999999999999 7888888878999999999999999885 4678899999
Q ss_pred cceecccCccccCCCc--cccccCCCCEEeccCCcCcc-ccccccCCCC
Q 038611 540 LISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEE-VPEGMQMLEN 585 (837)
Q Consensus 540 L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~ 585 (837)
|++|++++|..++.+| .+.++++|++|++++|.+.. .|..++.+++
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 9999999987677776 58889999999999887765 4555544333
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=213.18 Aligned_cols=135 Identities=24% Similarity=0.291 Sum_probs=106.5
Q ss_pred hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccce
Q 038611 464 WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLIS 542 (837)
Q Consensus 464 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~ 542 (837)
...+++++++++|.+..+++..+..+++|++|++++| .+..+++..|.++++|++|++++|.+..+|. .++.+++|++
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 3467899999999988888777888999999999988 6777877777889999999999998888775 6888999999
Q ss_pred ecccCccccC-CCc-cccccCCCCEEeccCCcCcccc-ccccCCCCC----CEEeccCCCCCCC
Q 038611 543 LLLQRCRRLK-RVP-SVAKLLALQHLDLRGTSIEEVP-EGMQMLENL----SHLYLYSPPLKEL 599 (837)
Q Consensus 543 L~L~~~~~l~-~lp-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L----~~L~l~~~~l~~~ 599 (837)
|++++|.... .+| .++++++|++|++++|.+..++ ..++.+++| ++|++++|.+..+
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 9999865433 367 7888999999999988877664 445666666 6677766655443
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=204.37 Aligned_cols=138 Identities=20% Similarity=0.215 Sum_probs=119.0
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-ChhhhcccccceecccC
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQR 547 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 547 (837)
+.+++++|.+..+|.... ++|++|++++| .+..+++..|.++++|++|+|++|.+..+ |..++.+++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578999999999987654 89999999999 68888877789999999999999999887 67899999999999999
Q ss_pred ccccCCCccccccCCCCEEeccCCcCcc--ccccccCCCCCCEEeccCCCCCCCCCCcccCCccC--cEEEc
Q 038611 548 CRRLKRVPSVAKLLALQHLDLRGTSIEE--VPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL--CRLSL 615 (837)
Q Consensus 548 ~~~l~~lp~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L--~~L~l 615 (837)
| .++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+... .++.+++| +.|++
T Consensus 79 N-~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 79 N-KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLL 145 (520)
T ss_dssp S-CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEE
T ss_pred C-ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEe
Confidence 6 57788844 89999999999999886 578999999999999999987652 25556666 77766
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.5e-20 Score=197.20 Aligned_cols=220 Identities=22% Similarity=0.272 Sum_probs=130.0
Q ss_pred CCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccC
Q 038611 515 HGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYS 593 (837)
Q Consensus 515 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 593 (837)
.++++|+|++|.+..+|..++.+++|++|+|++|. ++.+| .++++++|++|++++|.+..+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 44555555555555555555555555555555532 33444 45555555555555555555555555555555555555
Q ss_pred CC-CCCCCCCc--------ccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceE
Q 038611 594 PP-LKELPAGL--------LPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKY 664 (837)
Q Consensus 594 ~~-l~~~p~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~ 664 (837)
|. +..+|..+ ++++++|++|++ ..+... ..+..++.+ ++|+.|+++.|.+..++..
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L-~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~~l~~~------------ 224 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIR-SLPASIANL-QNLKSLKIRNSPLSALGPA------------ 224 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEE-EEECCC-CCCGGGGGC-TTCCEEEEESSCCCCCCGG------------
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEEC-cCCCcC-cchHhhcCC-CCCCEEEccCCCCCcCchh------------
Confidence 43 33344331 122555555555 222222 122334455 5666666665544322111
Q ss_pred EEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEE
Q 038611 665 CLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVL 744 (837)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L 744 (837)
+..+++|+.|++++|.....+|..+ +.++ +|+.|
T Consensus 225 ------------------------------------l~~l~~L~~L~Ls~n~~~~~~p~~~---------~~l~-~L~~L 258 (328)
T 4fcg_A 225 ------------------------------------IHHLPKLEELDLRGCTALRNYPPIF---------GGRA-PLKRL 258 (328)
T ss_dssp ------------------------------------GGGCTTCCEEECTTCTTCCBCCCCT---------TCCC-CCCEE
T ss_pred ------------------------------------hccCCCCCEEECcCCcchhhhHHHh---------cCCC-CCCEE
Confidence 1224778888888877665555543 3567 99999
Q ss_pred EEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEeccc
Q 038611 745 RFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHY 814 (837)
Q Consensus 745 ~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~ 814 (837)
+|++|+....+|. .+..+++|++|++++|+.+..+|. .+..+|+|+.+.+..
T Consensus 259 ~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~----------------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 259 ILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPS----------------LIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCG----------------GGGGSCTTCEEECCG
T ss_pred ECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccH----------------HHhhccCceEEeCCH
Confidence 9999988888754 467899999999999988888865 567789999988774
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1.5e-19 Score=201.95 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=110.7
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
..+++.+++++|.+..+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.+..+| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 356777777777777765 2467777777777777 566665 467777777777777777765 67777777777
Q ss_pred ccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCC-CCCCCCCcccCCccCcEEEccccchhhh
Q 038611 545 LQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPP-LKELPAGLLPRLRKLCRLSLYFGWEALE 623 (837)
Q Consensus 545 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 623 (837)
+++| .++.+| ++.+++|++|++++|.+..+| ++.+++|++|++++|. +..++ ++.+++|+.|++ ..+....
T Consensus 113 L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l-s~n~l~~ 184 (457)
T 3bz5_A 113 CDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDC-SFNKITE 184 (457)
T ss_dssp CCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEEC-CSSCCCC
T ss_pred CCCC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEEC-CCCccce
Confidence 7775 455555 677777777777777777664 6677777777777773 44442 566777777777 3333332
Q ss_pred hhHHHHhhhhhccCeeEEeeccccch
Q 038611 624 ETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 624 ~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
.. +..+ ++|+.|+++.|.+..+
T Consensus 185 l~---l~~l-~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 185 LD---VSQN-KLLNRLNCDTNNITKL 206 (457)
T ss_dssp CC---CTTC-TTCCEEECCSSCCSCC
T ss_pred ec---cccC-CCCCEEECcCCcCCee
Confidence 21 5566 6777777777665543
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=3.6e-19 Score=210.94 Aligned_cols=160 Identities=24% Similarity=0.288 Sum_probs=133.2
Q ss_pred ccCCCch-hhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-h
Q 038611 455 LLEFPGE-QEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-N 532 (837)
Q Consensus 455 ~~~~p~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~ 532 (837)
+..+|.. .....+++.+++++|.+..+++..+..+++|++|++++| .+..+|...|.++++|++|+|++|.+..+| .
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 3444432 344578999999999999988777889999999999999 788899877899999999999999998887 6
Q ss_pred hhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCcccccc-c--cCCCCCCEEeccCCCCCCCCCCcccCCc
Q 038611 533 SVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEG-M--QMLENLSHLYLYSPPLKELPAGLLPRLR 608 (837)
Q Consensus 533 ~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~--~~l~~L~~L~l~~~~l~~~p~~~l~~l~ 608 (837)
.++++++|++|++++|......| .++++++|++|++++|.+..++.. + ..+++|++|++++|.+..+++..++.++
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 195 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence 78999999999999976555555 688999999999999988887654 3 3568999999999998888777678887
Q ss_pred cCcEEEc
Q 038611 609 KLCRLSL 615 (837)
Q Consensus 609 ~L~~L~l 615 (837)
+|+.|.+
T Consensus 196 ~L~~L~l 202 (680)
T 1ziw_A 196 RLFGLFL 202 (680)
T ss_dssp EECEEEC
T ss_pred hhhhhhc
Confidence 7777777
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7.1e-19 Score=188.65 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=101.3
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
..++.+++.+|.+..++...+..+++|++|++++| .+..+++..|..+++|++|++++|.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 45666666666666666555566666666666666 4555544445666666666666666666665443 56666666
Q ss_pred cCccccCCCc--cccccCCCCEEeccCCcCc---cccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccch
Q 038611 546 QRCRRLKRVP--SVAKLLALQHLDLRGTSIE---EVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWE 620 (837)
Q Consensus 546 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 620 (837)
++|. ++.++ .+.++++|++|++++|.+. ..|..+..+++|++|++++|.+..+|... . ++|++|++ ..+.
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~--~~L~~L~l-~~n~ 203 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-P--PSLTELHL-DGNK 203 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-C--TTCSEEEC-TTSC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-c--ccCCEEEC-CCCc
Confidence 6643 33443 3666666666666666554 23445566666666666666666666542 2 56666666 3333
Q ss_pred hhhhhHHHHhhhhhccCeeEEeeccc
Q 038611 621 ALEETVEETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 621 ~~~~~~~~l~~l~~~L~~L~l~~~~~ 646 (837)
........+..+ ++|+.|+++.|.+
T Consensus 204 l~~~~~~~~~~l-~~L~~L~Ls~n~l 228 (330)
T 1xku_A 204 ITKVDAASLKGL-NNLAKLGLSFNSI 228 (330)
T ss_dssp CCEECTGGGTTC-TTCCEEECCSSCC
T ss_pred CCccCHHHhcCC-CCCCEEECCCCcC
Confidence 333333445555 6666666665543
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.5e-19 Score=201.56 Aligned_cols=342 Identities=18% Similarity=0.150 Sum_probs=217.2
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc-cc-Chhhhcccccceecc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE-VL-PNSVSDLMNLISLLL 545 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~l~~L~~L~L 545 (837)
-+.+...++.+..+|. . .++|++|++++| .+..+++..|.++++|++|+|++|.+. .+ |..+..+++|++|+|
T Consensus 12 ~~~~~c~~~~l~~lp~-l---~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L---PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCSSCCC-C---CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcccCCC-C---CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 4457777888888876 2 278999999999 677776666799999999999999975 55 567899999999999
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCcc-cccc--ccCCCCCCEEeccCCCCCCCC-CCcccCCccCcEEEccccch
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEE-VPEG--MQMLENLSHLYLYSPPLKELP-AGLLPRLRKLCRLSLYFGWE 620 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~l~~~p-~~~l~~l~~L~~L~l~~~~~ 620 (837)
++|......| .++++++|++|++++|.+.. +|.. +.++++|++|++++|.+..++ ...++++++|++|++ ..+.
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L-~~n~ 165 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL-TFNK 165 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC-TTCC
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC-CCCc
Confidence 9976555557 79999999999999998875 4544 889999999999999998874 444789999999999 4444
Q ss_pred hhhhhHHHHhhhh-hccCeeEEeeccccchhhhhhc-------ccCCccceEEEEeccCcCC--------CCccccceee
Q 038611 621 ALEETVEETGRLS-DRLDTFEGHFSKLNNFNIYVKS-------SDGRESEKYCLMLSPDYVG--------DSVIADLEVD 684 (837)
Q Consensus 621 ~~~~~~~~l~~l~-~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~~~~~~~~~~~~--------~~~~~~~~l~ 684 (837)
........+..+. .+|+.|+++.+.+..++..... ....+|..+.+..+..... .....++.+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 4433333344331 4688888888776654322110 1113355554433322100 0012233333
Q ss_pred eccchhhhhccCCCCc-------c--cCCCCCcEEEEeeecchhhhhhcccc---ccccc------------cccccccc
Q 038611 685 RSVCLIANKICEKEKP-------I--VLPEDVQCLEMFEVYDIASLNDVLPR---EQGLV------------NIGKFSHD 740 (837)
Q Consensus 685 l~~~~~~~~~~~~~~~-------~--~~~~~L~~L~l~~~~~~~~l~~~~~~---L~~L~------------~~~~~~~~ 740 (837)
++++...........+ + ..+++|+.|+++++......+.++.+ |+.|. ....++ +
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~ 324 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-H 324 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-c
Confidence 3333111110000000 0 01234555555544322222222221 11110 023566 8
Q ss_pred ccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEeccccccccc
Q 038611 741 LKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKT 820 (837)
Q Consensus 741 L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~ 820 (837)
|+.|++++| .++.+++ ..+..+++|++|++++| .+..++. ..+..+|+|+.|+|+++ ++++
T Consensus 325 L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~---------------~~~~~l~~L~~L~L~~N-~l~~ 385 (455)
T 3v47_A 325 LLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGD---------------QSFLGLPNLKELALDTN-QLKS 385 (455)
T ss_dssp CCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECT---------------TTTTTCTTCCEEECCSS-CCSC
T ss_pred CCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccCh---------------hhccccccccEEECCCC-cccc
Confidence 889999887 5566533 35677888999999888 4444422 14567899999999995 6777
Q ss_pred ccCCCCcccCCCCccC
Q 038611 821 FCSDNGVLVCDPLQEI 836 (837)
Q Consensus 821 i~~~~~~~~~~sL~~l 836 (837)
++.. ....+++|++|
T Consensus 386 ~~~~-~~~~l~~L~~L 400 (455)
T 3v47_A 386 VPDG-IFDRLTSLQKI 400 (455)
T ss_dssp CCTT-TTTTCTTCCEE
T ss_pred CCHh-HhccCCcccEE
Confidence 7651 22457788766
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=5.5e-19 Score=207.68 Aligned_cols=148 Identities=22% Similarity=0.270 Sum_probs=128.9
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. .+.+++++++++|.++.+++..|..+++|++|++++| .+..++++.|.++++|++|+|++|.+..+
T Consensus 39 ~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 34566778764 4568999999999999999988999999999999999 78999998899999999999999999999
Q ss_pred Ch-hhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcc--ccccccCCCCCCEEeccCCCCCCCCCC
Q 038611 531 PN-SVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEE--VPEGMQMLENLSHLYLYSPPLKELPAG 602 (837)
Q Consensus 531 p~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~ 602 (837)
|. .+.++++|++|+|++| .++.+| .++++++|++|++++|.+.. +|..++.+++|++|++++|.++.++.+
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 85 5789999999999996 566676 59999999999999998875 577889999999999999887765543
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=193.16 Aligned_cols=266 Identities=19% Similarity=0.178 Sum_probs=184.0
Q ss_pred cccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC
Q 038611 452 REHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP 531 (837)
Q Consensus 452 ~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 531 (837)
+..+..+|.. ...+++.+++.+|.+..++...+..+++|++|++++| .+..++...|.++++|++|+|++|.+..+|
T Consensus 40 ~~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 3455666653 3357888888888888887767788888888888888 677777666788888888888888888887
Q ss_pred hh-hhcccccceecccCccccCCCcc---ccccCCCCEEeccCC-cCcccc-ccccCCCCCCEEeccCCCCCCCCCCccc
Q 038611 532 NS-VSDLMNLISLLLQRCRRLKRVPS---VAKLLALQHLDLRGT-SIEEVP-EGMQMLENLSHLYLYSPPLKELPAGLLP 605 (837)
Q Consensus 532 ~~-i~~l~~L~~L~L~~~~~l~~lp~---~~~l~~L~~L~l~~~-~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~ 605 (837)
.. +..+++|++|++++| .++.+|. +.++++|++|++++| .+..++ ..+..+++|++|++++|.+..+++..++
T Consensus 117 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred HhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 65 778888888888885 4556653 778888888888888 566664 4678888888888888887776544478
Q ss_pred CCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeee
Q 038611 606 RLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDR 685 (837)
Q Consensus 606 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l 685 (837)
++++|++|++ ..+.........+..+ ++|+.|+++.|.+..++.. .+.
T Consensus 196 ~l~~L~~L~l-~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~-------~l~----------------------- 243 (353)
T 2z80_A 196 SIQNVSHLIL-HMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFS-------ELS----------------------- 243 (353)
T ss_dssp TCSEEEEEEE-ECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC---------------------------------
T ss_pred ccccCCeecC-CCCccccchhhhhhhc-ccccEEECCCCcccccccc-------ccc-----------------------
Confidence 8888888888 4444433333445556 8888888887765432110 000
Q ss_pred ccchhhhhccCCCCcccCCCCCcEEEEeeecc----hhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhh
Q 038611 686 SVCLIANKICEKEKPIVLPEDVQCLEMFEVYD----IASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLL 761 (837)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 761 (837)
.....+.++.+++.++.- ...++.++ ..++ +|+.|++++| .++.+|. +.+
T Consensus 244 --------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l---------~~l~-~L~~L~Ls~N-~l~~i~~-~~~ 297 (353)
T 2z80_A 244 --------------TGETNSLIKKFTFRNVKITDESLFQVMKLL---------NQIS-GLLELEFSRN-QLKSVPD-GIF 297 (353)
T ss_dssp -----------------CCCCCCEEEEESCBCCHHHHHHHHHHH---------HTCT-TCCEEECCSS-CCCCCCT-TTT
T ss_pred --------------cccccchhhccccccccccCcchhhhHHHH---------hccc-CCCEEECCCC-CCCccCH-HHH
Confidence 001134556666655541 22344332 2566 8999999987 6677643 445
Q ss_pred hhcCCccEEEeccccchh
Q 038611 762 PALKNLECLEVCGCDSIE 779 (837)
Q Consensus 762 ~~L~~L~~L~l~~c~~l~ 779 (837)
..+++|++|++++|+-..
T Consensus 298 ~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred hcCCCCCEEEeeCCCccC
Confidence 788899999999886443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=5.5e-19 Score=189.68 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=97.6
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-Chhhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L 545 (837)
.++.+.+.++.+..+|... .++|++|++++| .+..++...|.++++|++|+|++|.+..+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666666666543 256667777666 45556555556667777777777766655 456666677777777
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCC--CCCCcccCCccCcEEEccccchh
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKE--LPAGLLPRLRKLCRLSLYFGWEA 621 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~ 621 (837)
++| .++.+| .+. ++|++|++++|.+..+|.. +.++++|++|++++|.+.. ++...++.+ +|+.|++. .+..
T Consensus 110 ~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~-~n~l 184 (332)
T 2ft3_A 110 SKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS-EAKL 184 (332)
T ss_dssp CSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC-SSBC
T ss_pred CCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc-CCCC
Confidence 664 455555 333 6677777777766666553 5666777777777666642 333335555 66666662 2222
Q ss_pred hhhhHHHHhhhhhccCeeEEeecccc
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
.... .. -. ++|+.|+++.|.+.
T Consensus 185 ~~l~-~~--~~-~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 185 TGIP-KD--LP-ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCC-SS--SC-SSCSCCBCCSSCCC
T ss_pred CccC-cc--cc-CCCCEEECCCCcCC
Confidence 2110 00 11 45666666665443
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=4.7e-20 Score=195.87 Aligned_cols=68 Identities=19% Similarity=-0.008 Sum_probs=44.4
Q ss_pred cccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccc
Q 038611 736 KFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYL 815 (837)
Q Consensus 736 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~ 815 (837)
.++ +|++|++++|.--..+| ..+..+++|++|++++|.-...+|.. ..+++|+.|++.++
T Consensus 242 ~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~-----------------~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 242 LSK-NLNGLDLRNNRIYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG-----------------GNLQRFDVSAYANN 301 (313)
T ss_dssp CCT-TCCEEECCSSCCEECCC--GGGGGCTTCCEEECCSSEEEEECCCS-----------------TTGGGSCGGGTCSS
T ss_pred ccC-CCCEEECcCCcccCcCC--hHHhcCcCCCEEECcCCcccccCCCC-----------------ccccccChHHhcCC
Confidence 344 78888888764332432 24667788888888887433345432 13778888888888
Q ss_pred cccccccC
Q 038611 816 PEFKTFCS 823 (837)
Q Consensus 816 p~L~~i~~ 823 (837)
|.+.+.+.
T Consensus 302 ~~lc~~p~ 309 (313)
T 1ogq_A 302 KCLCGSPL 309 (313)
T ss_dssp SEEESTTS
T ss_pred CCccCCCC
Confidence 87777655
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=192.14 Aligned_cols=270 Identities=19% Similarity=0.169 Sum_probs=199.8
Q ss_pred EEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCc
Q 038611 470 RVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRC 548 (837)
Q Consensus 470 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~ 548 (837)
..+..++.++.+|.... ++|++|++++| .+..++...|.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 36777888999987653 58999999999 688888877899999999999999998774 56899999999999995
Q ss_pred cccCCCc-c-ccccCCCCEEeccCCcCccccc--cccCCCCCCEEeccCC-CCCCCCCCcccCCccCcEEEccccchhhh
Q 038611 549 RRLKRVP-S-VAKLLALQHLDLRGTSIEEVPE--GMQMLENLSHLYLYSP-PLKELPAGLLPRLRKLCRLSLYFGWEALE 623 (837)
Q Consensus 549 ~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~-~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 623 (837)
.++.+| . ++++++|++|++++|.+..+|. .+.++++|++|++++| .+..++...++++++|++|++ ..+....
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~ 188 (353)
T 2z80_A 111 -YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI-DASDLQS 188 (353)
T ss_dssp -CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE-EETTCCE
T ss_pred -cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC-CCCCcCc
Confidence 566777 4 8999999999999999999987 6789999999999998 477777666899999999999 4444444
Q ss_pred hhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccC
Q 038611 624 ETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVL 703 (837)
Q Consensus 624 ~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 703 (837)
.....+..+ ++|+.|+++.|.+..++.... ..
T Consensus 189 ~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~-----------------------------------------------~~ 220 (353)
T 2z80_A 189 YEPKSLKSI-QNVSHLILHMKQHILLLEIFV-----------------------------------------------DV 220 (353)
T ss_dssp ECTTTTTTC-SEEEEEEEECSCSTTHHHHHH-----------------------------------------------HH
T ss_pred cCHHHHhcc-ccCCeecCCCCccccchhhhh-----------------------------------------------hh
Confidence 445667788 899999998887654433211 11
Q ss_pred CCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcch---hhhhhhhcCCccEEEeccccchhh
Q 038611 704 PEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLF---SLRLLPALKNLECLEVCGCDSIEE 780 (837)
Q Consensus 704 ~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~~~L~~L~~L~l~~c~~l~~ 780 (837)
+++|+.|+++++.-....+..+ ....... .++.+++.++. +.+-. -+..+..+++|++|++++| .++.
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~l------~~~~~~~-~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~ 291 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSEL------STGETNS-LIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRN-QLKS 291 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC------------CCC-CCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCC
T ss_pred cccccEEECCCCcccccccccc------ccccccc-hhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCC-CCCc
Confidence 4678888887765221111111 1112234 77888888763 33310 0124678999999999998 6666
Q ss_pred hhccccchhhhhcccccccccccCCCcceEecccccc
Q 038611 781 IVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPE 817 (837)
Q Consensus 781 i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~ 817 (837)
++.. ....+++|+.|+|+++|-
T Consensus 292 i~~~---------------~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 292 VPDG---------------IFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCTT---------------TTTTCTTCCEEECCSSCB
T ss_pred cCHH---------------HHhcCCCCCEEEeeCCCc
Confidence 6431 235789999999999864
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=4.2e-19 Score=190.56 Aligned_cols=269 Identities=17% Similarity=0.142 Sum_probs=191.4
Q ss_pred cccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCccccCCCc-cccccCCCCEEec
Q 038611 491 ILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDL 568 (837)
Q Consensus 491 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l 568 (837)
+++.++++++ .+..+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|......| .++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 7999999988 788888765 378999999999999885 579999999999999975444446 7999999999999
Q ss_pred cCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhh--hhHHHHhhhhhccCeeEEeeccc
Q 038611 569 RGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALE--ETVEETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 569 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~~L~~L~l~~~~~ 646 (837)
++|.+..+|..+. ++|++|++++|.+..+|...++++++|+.|++ ..+.... .....+..+ +|+.|+++.|.+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM-GGNPLENSGFEPGAFDGL--KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC-CSCCCBGGGSCTTSSCSC--CCSCCBCCSSBC
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC-CCCccccCCCCcccccCC--ccCEEECcCCCC
Confidence 9999999998776 89999999999999999887899999999999 4443321 222333333 788899988877
Q ss_pred cchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCC-CcccCCCCCcEEEEeeecchhhhhhcc
Q 038611 647 NNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKE-KPIVLPEDVQCLEMFEVYDIASLNDVL 725 (837)
Q Consensus 647 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~~~ 725 (837)
..++.... .+| +.+.++++ .+.... ..+..+++|+.|+++++.-....+..
T Consensus 185 ~~l~~~~~----~~L-------------------~~L~l~~n----~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~- 236 (332)
T 2ft3_A 185 TGIPKDLP----ETL-------------------NELHLDHN----KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS- 236 (332)
T ss_dssp SSCCSSSC----SSC-------------------SCCBCCSS----CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-
T ss_pred CccCcccc----CCC-------------------CEEECCCC----cCCccCHHHhcCCCCCCEEECCCCcCCcCChhH-
Confidence 66543221 122 23333332 111111 12445688999999877532211222
Q ss_pred cccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCC
Q 038611 726 PREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLP 805 (837)
Q Consensus 726 ~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p 805 (837)
...++ +|+.|++++| .++.+|. .+..+++|+.|+++++ .++.++...-. .......++
T Consensus 237 --------~~~l~-~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~---------~~~~~~~~~ 294 (332)
T 2ft3_A 237 --------LSFLP-TLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFC---------PVGFGVKRA 294 (332)
T ss_dssp --------GGGCT-TCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSS---------CSSCCSSSC
T ss_pred --------hhCCC-CCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHcc---------ccccccccc
Confidence 23566 9999999997 6777754 4678999999999988 56666432100 000112368
Q ss_pred CcceEeccccccc
Q 038611 806 RLKKLEFHYLPEF 818 (837)
Q Consensus 806 ~L~~L~L~~~p~L 818 (837)
+|+.|++.++|-.
T Consensus 295 ~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 295 YYNGISLFNNPVP 307 (332)
T ss_dssp CBSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 8999999998843
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2e-19 Score=191.02 Aligned_cols=248 Identities=16% Similarity=0.172 Sum_probs=188.7
Q ss_pred ccccEEEccccCCCC---CCCCCCCCCCcccEEEccC-CcCccccChhHhhcCCCCcEEEecCCCCc-ccChhhhccccc
Q 038611 466 ANLERVSLMMNDIDE---IPSNMSPHCEILSTLLLQR-NINLQWIPECFFAHMHGLKILNLSFTAIE-VLPNSVSDLMNL 540 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L 540 (837)
..++++++.+|.+.. +|. .+..+++|++|++++ |.....+|.. |.++++|++|+|++|.+. .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 468899999998885 444 457899999999985 6333456665 489999999999999987 788889999999
Q ss_pred ceecccCccccCCCc-cccccCCCCEEeccCCcCc-cccccccCCC-CCCEEeccCCCCC-CCCCCcccCCccCcEEEcc
Q 038611 541 ISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIE-EVPEGMQMLE-NLSHLYLYSPPLK-ELPAGLLPRLRKLCRLSLY 616 (837)
Q Consensus 541 ~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~l~-~~p~~~l~~l~~L~~L~l~ 616 (837)
++|++++|.....+| .+.++++|++|++++|.+. .+|..+..++ +|++|++++|.+. .+|.. ++.++ |+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L- 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL- 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC-
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC-
Confidence 999999976655788 7999999999999999887 7888998888 8999999999887 45544 77777 999999
Q ss_pred ccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccC
Q 038611 617 FGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICE 696 (837)
Q Consensus 617 ~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 696 (837)
..+.........+..+ ++|+.|+++.|.+......
T Consensus 205 s~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-------------------------------------------- 239 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-------------------------------------------- 239 (313)
T ss_dssp CSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGGG--------------------------------------------
T ss_pred cCCcccCcCCHHHhcC-CCCCEEECCCCceeeecCc--------------------------------------------
Confidence 4444444455667778 8889998887754321100
Q ss_pred CCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEecccc
Q 038611 697 KEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCD 776 (837)
Q Consensus 697 ~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 776 (837)
+..+++|+.|+++++.....+|.++ ..++ +|+.|++++|.--..+|.. ..+++|+.|++++++
T Consensus 240 ----~~~l~~L~~L~Ls~N~l~~~~p~~l---------~~l~-~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 ----VGLSKNLNGLDLRNNRIYGTLPQGL---------TQLK-FLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNK 302 (313)
T ss_dssp ----CCCCTTCCEEECCSSCCEECCCGGG---------GGCT-TCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSS
T ss_pred ----ccccCCCCEEECcCCcccCcCChHH---------hcCc-CCCEEECcCCcccccCCCC---ccccccChHHhcCCC
Confidence 1235899999998887544555543 3566 9999999998544455442 567899999999887
Q ss_pred chhh
Q 038611 777 SIEE 780 (837)
Q Consensus 777 ~l~~ 780 (837)
.+..
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 6643
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=2.6e-18 Score=184.21 Aligned_cols=269 Identities=18% Similarity=0.175 Sum_probs=168.9
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-Chhhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L 545 (837)
+++.+++..+.+..+|... .++|++|++++| .+..++...|.++++|++|+|++|.+..+ |..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5677777777777776543 257778888877 56677766667788888888888877766 667777888888888
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCC--CCCCcccCCccCcEEEccccchh
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKE--LPAGLLPRLRKLCRLSLYFGWEA 621 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l~~~~~~ 621 (837)
++| .++.+| .+. ++|++|++++|.+..++. .+.++++|++|++++|.+.. +....+.++++|+.|++. .+..
T Consensus 108 s~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n~l 183 (330)
T 1xku_A 108 SKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNI 183 (330)
T ss_dssp CSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-SSCC
T ss_pred CCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-CCcc
Confidence 774 456666 443 678888888877777665 35777788888887777653 333346777777777773 2222
Q ss_pred hhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcc
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPI 701 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 701 (837)
.... . .-. ++|+.|+++.|.+.... ...+
T Consensus 184 ~~l~-~--~~~-~~L~~L~l~~n~l~~~~-----------------------------------------------~~~~ 212 (330)
T 1xku_A 184 TTIP-Q--GLP-PSLTELHLDGNKITKVD-----------------------------------------------AASL 212 (330)
T ss_dssp CSCC-S--SCC-TTCSEEECTTSCCCEEC-----------------------------------------------TGGG
T ss_pred ccCC-c--ccc-ccCCEEECCCCcCCccC-----------------------------------------------HHHh
Confidence 1110 0 011 45566666555433211 0012
Q ss_pred cCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhh
Q 038611 702 VLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEI 781 (837)
Q Consensus 702 ~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i 781 (837)
..+++|+.|+++++.-....+.. ...++ +|+.|++++| .++.+|. .+..+++|++|++++| .++.+
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~---------~~~l~-~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~i~~~ 278 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGS---------LANTP-HLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-NISAI 278 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTT---------GGGST-TCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-CCCCC
T ss_pred cCCCCCCEEECCCCcCceeChhh---------ccCCC-CCCEEECCCC-cCccCCh--hhccCCCcCEEECCCC-cCCcc
Confidence 33578888888776522211112 22456 8899999887 5666644 4667888999999887 56665
Q ss_pred hccccchhhhhcccccccccccCCCcceEecccccc
Q 038611 782 VAVEDEETEKELGTITIINILTLPRLKKLEFHYLPE 817 (837)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~ 817 (837)
+...-. .......++.|+.|++.+.|-
T Consensus 279 ~~~~f~---------~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 279 GSNDFC---------PPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTSSS---------CSSCCTTSCCCSEEECCSSSS
T ss_pred ChhhcC---------CcccccccccccceEeecCcc
Confidence 432100 001122467888888888774
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=1.5e-18 Score=193.82 Aligned_cols=283 Identities=17% Similarity=0.107 Sum_probs=168.5
Q ss_pred ccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhh
Q 038611 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSV 534 (837)
Q Consensus 455 ~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i 534 (837)
+..+| ......+++.+++.+|.+..++ +..+++|++|++++| .+..++ ++.+++|++|++++|.+..+| +
T Consensus 54 l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~ 123 (457)
T 3bz5_A 54 ITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--V 123 (457)
T ss_dssp CCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--C
T ss_pred cccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--C
Confidence 33444 2344567888888888887774 467788888888887 566664 577888888888888877775 6
Q ss_pred hcccccceecccCccccCCCccccccCCCCEEeccCC-cCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEE
Q 038611 535 SDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGT-SIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRL 613 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 613 (837)
+.+++|++|++++| .++.+| ++++++|++|++++| .+..+ .++.+++|++|++++|.++.+| ++.+++|+.|
T Consensus 124 ~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L 196 (457)
T 3bz5_A 124 SQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRL 196 (457)
T ss_dssp TTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEE
T ss_pred CCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEE
Confidence 77888888888875 344454 667777777777777 45555 3566777777777777777765 5667777777
Q ss_pred EccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCC--Ccccc----------c
Q 038611 614 SLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGD--SVIAD----------L 681 (837)
Q Consensus 614 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~~----------~ 681 (837)
++ ..+..... .++.+ ++|+.|+++.|.+..++ .....+|..+.+..+.....+ ....+ .
T Consensus 197 ~l-~~N~l~~~---~l~~l-~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 197 NC-DTNNITKL---DLNQN-IQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL 267 (457)
T ss_dssp EC-CSSCCSCC---CCTTC-TTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred EC-cCCcCCee---ccccC-CCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCC
Confidence 77 33333322 25566 77777777777666543 122334554444433221111 11111 2
Q ss_pred eeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhh
Q 038611 682 EVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLL 761 (837)
Q Consensus 682 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 761 (837)
.+.++++.....+. ...+++|+.|++++|.....++...++++.+. ....+ +|+.|+++++ .++.+ + +
T Consensus 268 ~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~-l~~~~-~L~~L~L~~N-~l~~l-~---l 335 (457)
T 3bz5_A 268 EIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELD-LSQNP-KLVYLYLNNT-ELTEL-D---V 335 (457)
T ss_dssp CCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC-CTTCT-TCCEEECTTC-CCSCC-C---C
T ss_pred EEECCCCccCCccc-----ccccccCCEEECCCCcccceeccCCCcceEec-hhhcc-cCCEEECCCC-ccccc-c---c
Confidence 22222221111111 22346777777777765555543333444433 33455 7777777775 45554 2 4
Q ss_pred hhcCCccEEEeccc
Q 038611 762 PALKNLECLEVCGC 775 (837)
Q Consensus 762 ~~L~~L~~L~l~~c 775 (837)
..+++|+.|+++++
T Consensus 336 ~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 336 SHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCSEEECCSS
T ss_pred ccCCcCcEEECCCC
Confidence 56677777777765
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=5.6e-18 Score=195.69 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=119.3
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-Chhhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L 545 (837)
..+.+++++|.++.+|.... ++|++|++++| .+..+++..|.++++|++|+|++|.+..+ |..+..+++|++|+|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC---CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34889999999999987653 89999999999 78888877789999999999999999987 677999999999999
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCcccc--ccccCCCCCCEEeccCCCCCCCCCCcccCCccC--cEEEc
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEVP--EGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL--CRLSL 615 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L--~~L~l 615 (837)
++| .++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.... +..+++| ++|++
T Consensus 108 s~N-~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L 176 (562)
T 3a79_B 108 SHN-RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILL 176 (562)
T ss_dssp TTS-CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEE
T ss_pred CCC-cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEe
Confidence 995 57788844 8999999999999998865 78999999999999999877532 4445555 77776
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=208.39 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=45.0
Q ss_pred CCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 584 ENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 584 ~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
++|++|++++|.+..+++..++.+++|+.|++ ..+.........+..+ ++|+.|+++.|.+...
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL-AYNKINKIADEAFYGL-DNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEE-ESCCCCEECTTTTTTC-SSCCEEEEESCCCSCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEEC-CCCcCCCCChHHhcCC-CCCCEEECCCCCCCcc
Confidence 56888888888777766666788888888888 4444444444556777 7888888887776543
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=8.1e-18 Score=193.59 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=80.3
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccC
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQR 547 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 547 (837)
++.+++.+|.+..+|.... ++|++|++++| .+..+|. .+++|++|+|++|.+..+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC---TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcCccChhhC---CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 5555566666555554432 45666666655 4555554 34556666666666555554 455566666655
Q ss_pred ccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHH
Q 038611 548 CRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVE 627 (837)
Q Consensus 548 ~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 627 (837)
| .++.+|. .+++|++|++++|.+..+|.. +++|++|++++|.+..+|.. +++|+.|++ .++......
T Consensus 111 N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L-~~N~l~~l~-- 177 (622)
T 3g06_A 111 N-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL----PSELCKLWA-YNNQLTSLP-- 177 (622)
T ss_dssp C-CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC----CTTCCEEEC-CSSCCSCCC--
T ss_pred C-cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc----cCCCCEEEC-CCCCCCCCc--
Confidence 3 3444443 445566666666655555543 25566666666655555432 234555555 222222111
Q ss_pred HHhhhhhccCeeEEeeccccc
Q 038611 628 ETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 628 ~l~~l~~~L~~L~l~~~~~~~ 648 (837)
..+ ++|+.|+++.|.+..
T Consensus 178 --~~~-~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 178 --MLP-SGLQELSVSDNQLAS 195 (622)
T ss_dssp --CCC-TTCCEEECCSSCCSC
T ss_pred --ccC-CCCcEEECCCCCCCC
Confidence 223 555555555555443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=2.7e-18 Score=192.62 Aligned_cols=242 Identities=21% Similarity=0.220 Sum_probs=175.1
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L 545 (837)
....+...++.+..+|.... ++++.|++++| .+..++...|.++++|++|+|++|.+..++ ..+..+++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP---SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC---TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCCC---CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 35677788888888887543 68999999998 677787777899999999999999988775 67889999999999
Q ss_pred cCccccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCC-CCCCCCCCcccCCccCcEEEccccchh
Q 038611 546 QRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSP-PLKELPAGLLPRLRKLCRLSLYFGWEA 621 (837)
Q Consensus 546 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~l~~~p~~~l~~l~~L~~L~l~~~~~~ 621 (837)
++| .++.+| .+.++++|++|++++|.+..+|. .+.++++|++|++++| .+..++.+.+.++++|+.|++. .+..
T Consensus 131 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l 208 (452)
T 3zyi_A 131 FDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG-MCNI 208 (452)
T ss_dssp CSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT-TSCC
T ss_pred CCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC-CCcc
Confidence 995 466666 48889999999999999888876 5788999999999985 5778887778889999999983 3333
Q ss_pred hhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcc
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPI 701 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 701 (837)
... ..+..+ .+|+.|+++.|.+..+... .+
T Consensus 209 ~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~-----------------------------------------------~~ 238 (452)
T 3zyi_A 209 KDM--PNLTPL-VGLEELEMSGNHFPEIRPG-----------------------------------------------SF 238 (452)
T ss_dssp SSC--CCCTTC-TTCCEEECTTSCCSEECGG-----------------------------------------------GG
T ss_pred ccc--cccccc-ccccEEECcCCcCcccCcc-----------------------------------------------cc
Confidence 221 235566 7777777776654332110 02
Q ss_pred cCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEecccc
Q 038611 702 VLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCD 776 (837)
Q Consensus 702 ~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 776 (837)
..+++|+.|++.++......+..+ ..++ +|+.|+|++| .++.+++ ..+..+++|+.|++++++
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~-~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAF---------DGLA-SLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTT---------TTCT-TCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred cCccCCCEEEeCCCcCceECHHHh---------cCCC-CCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 234677777776665222222222 2455 7888888876 5666643 345667788888887764
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2.4e-18 Score=182.42 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=116.0
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc---Chhhhcccccceecc
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL---PNSVSDLMNLISLLL 545 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L 545 (837)
+.+....+.+..+|.... ++|++|++++| .+..+|..+|.++++|++|+|++|.+..+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC---CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 356666666777766432 56777777777 56677777677777788888877776654 566667777788887
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCccccc--cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhh
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPE--GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEAL 622 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 622 (837)
++| .+..+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+...+...++.+++|++|++ ..+...
T Consensus 86 s~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~ 163 (306)
T 2z66_A 86 SFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM-AGNSFQ 163 (306)
T ss_dssp CSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC-TTCEEG
T ss_pred CCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC-CCCccc
Confidence 775 355566 57777778888887777776654 5677777888888777776655555677777777777 333332
Q ss_pred h-hhHHHHhhhhhccCeeEEeecccc
Q 038611 623 E-ETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 623 ~-~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
. ..+..+..+ ++|+.|+++.|.+.
T Consensus 164 ~~~~~~~~~~l-~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 164 ENFLPDIFTEL-RNLTFLDLSQCQLE 188 (306)
T ss_dssp GGEECSCCTTC-TTCCEEECTTSCCC
T ss_pred cccchhHHhhC-cCCCEEECCCCCcC
Confidence 2 223445566 67777777666543
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=2.4e-17 Score=184.02 Aligned_cols=161 Identities=25% Similarity=0.279 Sum_probs=82.7
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
.+++.+++.+|.+..+|.. +++|++|++++| .+..+|. ..++|++|++++|.+..+| +++.+++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n-~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL----PQSLKSLLVDNN-NLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC----CTTCCEEECCSS-CCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCccccc----cCCCcEEECCCC-ccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 4566666666666665432 255666666655 3444432 1145666666666655555 3556666666666
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhh
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEET 625 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 625 (837)
++| .++.+|.. ..+|++|++++|.+..+| .++++++|++|++++|.+..+|.. .++|++|++. .+.....
T Consensus 161 ~~N-~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~-~n~l~~l- 230 (454)
T 1jl5_A 161 DNN-SLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAG-NNILEEL- 230 (454)
T ss_dssp CSS-CCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECC-SSCCSSC-
T ss_pred CCC-cCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECc-CCcCCcc-
Confidence 654 34444421 135566666666555555 455555566666655555555432 1355555552 2222211
Q ss_pred HHHHhhhhhccCeeEEeeccccc
Q 038611 626 VEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 626 ~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
..++.+ ++|+.|+++.|.+..
T Consensus 231 -p~~~~l-~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 231 -PELQNL-PFLTTIYADNNLLKT 251 (454)
T ss_dssp -CCCTTC-TTCCEEECCSSCCSS
T ss_pred -cccCCC-CCCCEEECCCCcCCc
Confidence 124445 555555555554443
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.8e-19 Score=191.90 Aligned_cols=263 Identities=14% Similarity=0.089 Sum_probs=182.4
Q ss_pred EccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCcccc
Q 038611 472 SLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRL 551 (837)
Q Consensus 472 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l 551 (837)
.+..+.+...+...+..+++|+.|++++| .+..++...|..+++|++|+|++|.+...+. +..+++|++|++++|. +
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l 92 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-V 92 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-E
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-c
Confidence 34444444444444566788999999988 6777777777899999999999999887765 8889999999999863 4
Q ss_pred CCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHH-h
Q 038611 552 KRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEET-G 630 (837)
Q Consensus 552 ~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-~ 630 (837)
+.+| ..++|++|++++|.+..++.. .+++|++|++++|.+..+++..++.+++|++|++ ..+......+..+ .
T Consensus 93 ~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 93 QELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELAA 166 (317)
T ss_dssp EEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC-TTSCCCEEEGGGGGG
T ss_pred cccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC-CCCCCCcccHHHHhh
Confidence 4444 347899999999988877654 4788999999999988887655788899999999 4444444333444 3
Q ss_pred hhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEE
Q 038611 631 RLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCL 710 (837)
Q Consensus 631 ~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L 710 (837)
.+ ++|+.|+++.|.+..++. ...+++|+.|
T Consensus 167 ~l-~~L~~L~L~~N~l~~~~~-------------------------------------------------~~~l~~L~~L 196 (317)
T 3o53_A 167 SS-DTLEHLNLQYNFIYDVKG-------------------------------------------------QVVFAKLKTL 196 (317)
T ss_dssp GT-TTCCEEECTTSCCCEEEC-------------------------------------------------CCCCTTCCEE
T ss_pred cc-CcCCEEECCCCcCccccc-------------------------------------------------ccccccCCEE
Confidence 56 888888888776543211 0124678888
Q ss_pred EEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccch-hhhhccccchh
Q 038611 711 EMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSI-EEIVAVEDEET 789 (837)
Q Consensus 711 ~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l-~~i~~~~~~~~ 789 (837)
+++++. +..++..+ ..++ +|+.|++++| .++.+|. .+..+++|+.|++++|+-. ..++.
T Consensus 197 ~Ls~N~-l~~l~~~~---------~~l~-~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~------ 256 (317)
T 3o53_A 197 DLSSNK-LAFMGPEF---------QSAA-GVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRD------ 256 (317)
T ss_dssp ECCSSC-CCEECGGG---------GGGT-TCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCCBHHHHHH------
T ss_pred ECCCCc-CCcchhhh---------cccC-cccEEECcCC-cccchhh--HhhcCCCCCEEEccCCCccCcCHHH------
Confidence 887664 22332222 2455 8888888886 6666644 3567788888888887544 22221
Q ss_pred hhhcccccccccccCCCcceEecccccccccccC
Q 038611 790 EKELGTITIINILTLPRLKKLEFHYLPEFKTFCS 823 (837)
Q Consensus 790 ~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~ 823 (837)
.+..+|+|+.|++.+++.++....
T Consensus 257 ----------~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 257 ----------FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ----------HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ----------HHhccccceEEECCCchhccCCch
Confidence 345577788888877766665543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=4.7e-18 Score=178.13 Aligned_cols=170 Identities=24% Similarity=0.307 Sum_probs=80.3
Q ss_pred EEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-ChhhhcccccceecccCc
Q 038611 470 RVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQRC 548 (837)
Q Consensus 470 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~ 548 (837)
.++...+.+..+|... .++|+.|++++| .+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI---PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCSSCCTTC---CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcccCCcCC---CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3444444444444322 234555555555 34444444445555555555555555444 344555555555555554
Q ss_pred cccCCC-c-cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhh
Q 038611 549 RRLKRV-P-SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEET 625 (837)
Q Consensus 549 ~~l~~l-p-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 625 (837)
..++.+ | .+..+++|++|++++|.+..+ |..+.++++|++|++++|.+..++...++.+++|++|++ ..+......
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-CSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC-CCCcccccC
Confidence 334444 2 345555555555555554444 223445555555555555555554444455555555555 222222222
Q ss_pred HHHHhhhhhccCeeEEeecc
Q 038611 626 VEETGRLSDRLDTFEGHFSK 645 (837)
Q Consensus 626 ~~~l~~l~~~L~~L~l~~~~ 645 (837)
...+..+ ++|+.|+++.|.
T Consensus 170 ~~~~~~l-~~L~~L~l~~n~ 188 (285)
T 1ozn_A 170 ERAFRGL-HSLDRLLLHQNR 188 (285)
T ss_dssp TTTTTTC-TTCCEEECCSSC
T ss_pred HHHhcCc-cccCEEECCCCc
Confidence 2234444 555555555443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=6.7e-18 Score=176.94 Aligned_cols=193 Identities=27% Similarity=0.337 Sum_probs=154.8
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCC-Ccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA-IEV 529 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~ 529 (837)
.+..+..+|.. ...+++++++.+|.+..++...+..+++|++|++++| .+..++...|..+++|++|++++|. +..
T Consensus 19 ~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 19 PQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred CcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 34455666653 3468999999999999998877889999999999998 6777766667899999999999997 887
Q ss_pred c-ChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccC
Q 038611 530 L-PNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPR 606 (837)
Q Consensus 530 l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~ 606 (837)
+ |..+..+++|++|++++|......| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.+..+|...+..
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 7 6778899999999999965444435 588999999999999998888765 788999999999999999888877889
Q ss_pred CccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccc
Q 038611 607 LRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 607 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
+++|+.|++ ..+......+..+..+ ++|+.|+++.|.+..
T Consensus 176 l~~L~~L~l-~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 176 LHSLDRLLL-HQNRVAHVHPHAFRDL-GRLMTLYLFANNLSA 215 (285)
T ss_dssp CTTCCEEEC-CSSCCCEECTTTTTTC-TTCCEEECCSSCCSC
T ss_pred ccccCEEEC-CCCcccccCHhHccCc-ccccEeeCCCCcCCc
Confidence 999999999 4444444445566677 778888887765543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=184.91 Aligned_cols=184 Identities=27% Similarity=0.294 Sum_probs=99.9
Q ss_pred ccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh
Q 038611 453 EHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532 (837)
Q Consensus 453 ~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 532 (837)
..+..+|.. ...+++.+++.+|.+..++...+..+++|++|++++| .+..++...|.++++|++|+|++|.+..+|.
T Consensus 53 ~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 53 KNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 334445542 2345566666666666655555556666666666665 4555555555666666666666666655553
Q ss_pred -hhhcccccceecccCccccCCCc--cccccCCCCEEeccCC-cCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCC
Q 038611 533 -SVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGT-SIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRL 607 (837)
Q Consensus 533 -~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l 607 (837)
.+..+++|++|+|++|. ++.+| .+.++++|++|++++| .+..+|. .+.++++|++|++++|.++.+|. +..+
T Consensus 130 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l 206 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPL 206 (440)
T ss_dssp TTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTC
T ss_pred hHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCC
Confidence 35556666666666533 44444 3556666666666654 4444444 34556666666666666665553 4555
Q ss_pred ccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeec
Q 038611 608 RKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 608 ~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 644 (837)
++|+.|++ ..+.........+..+ ++|+.|+++.|
T Consensus 207 ~~L~~L~L-s~N~l~~~~~~~~~~l-~~L~~L~L~~n 241 (440)
T 3zyj_A 207 IKLDELDL-SGNHLSAIRPGSFQGL-MHLQKLWMIQS 241 (440)
T ss_dssp SSCCEEEC-TTSCCCEECTTTTTTC-TTCCEEECTTC
T ss_pred cccCEEEC-CCCccCccChhhhccC-ccCCEEECCCC
Confidence 66666666 3333333333344445 55555555444
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=4.9e-18 Score=180.02 Aligned_cols=241 Identities=18% Similarity=0.166 Sum_probs=176.1
Q ss_pred cEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh-hhcccccceecccCccccCCC---c-cccccCCCCEEe
Q 038611 493 STLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS-VSDLMNLISLLLQRCRRLKRV---P-SVAKLLALQHLD 567 (837)
Q Consensus 493 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l---p-~~~~l~~L~~L~ 567 (837)
+.+.++++ .+..+|..+ .++|++|+|++|.+..+|.. +..+++|++|++++|. ++.+ | .+..+++|++|+
T Consensus 10 ~~l~c~~~-~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSS-CCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCC-CcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEE
Confidence 46777776 788888754 36899999999999999865 6899999999999964 4433 5 677899999999
Q ss_pred ccCCcCccccccccCCCCCCEEeccCCCCCCCCC-CcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccc
Q 038611 568 LRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPA-GLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 568 l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 646 (837)
+++|.+..+|..+..+++|++|++++|.+..++. ..+..+++|++|++ ..+.........+..+ ++|+.|+++.|.+
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFNGIFNGL-SSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEEC-TTSCCEECSTTTTTTC-TTCCEEECTTCEE
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEEC-CCCcCCccchhhcccC-cCCCEEECCCCcc
Confidence 9999999999999999999999999999888875 45899999999999 4444444444557778 8999999987754
Q ss_pred cc--hhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhc
Q 038611 647 NN--FNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDV 724 (837)
Q Consensus 647 ~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~ 724 (837)
.. .+ ..+..+++|+.|+++++.-....+..
T Consensus 163 ~~~~~~------------------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 163 QENFLP------------------------------------------------DIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp GGGEEC------------------------------------------------SCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccch------------------------------------------------hHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 32 00 01223577888888776532222222
Q ss_pred ccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccC
Q 038611 725 LPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTL 804 (837)
Q Consensus 725 ~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 804 (837)
+ ..++ +|+.|++++| .++.+++. .+..+++|+.|++++|. +...+. ..+..+
T Consensus 195 ~---------~~l~-~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~---------------~~~~~~ 246 (306)
T 2z66_A 195 F---------NSLS-SLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKK---------------QELQHF 246 (306)
T ss_dssp T---------TTCT-TCCEEECTTS-CCSBCCSG-GGTTCTTCCEEECTTSC-CCBCSS---------------SSCCCC
T ss_pred h---------cCCC-CCCEEECCCC-ccCccChh-hccCcccCCEeECCCCC-CcccCH---------------HHHHhh
Confidence 2 2456 8888888886 45555432 35677888888888883 433321 134456
Q ss_pred C-CcceEeccccc
Q 038611 805 P-RLKKLEFHYLP 816 (837)
Q Consensus 805 p-~L~~L~L~~~p 816 (837)
| +|+.|+|+++|
T Consensus 247 ~~~L~~L~L~~N~ 259 (306)
T 2z66_A 247 PSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTCC
T ss_pred hccCCEEEccCCC
Confidence 4 88888888765
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=185.09 Aligned_cols=242 Identities=24% Similarity=0.264 Sum_probs=179.3
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L 545 (837)
....+....+.+..+|.... ++++.|++++| .+..++...|.++++|++|+|++|.+..++ ..+..+++|++|+|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS---TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC---TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCCC---CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 34577888888999987653 78999999999 788888777899999999999999998876 67889999999999
Q ss_pred cCccccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCC-CCCCCCCCcccCCccCcEEEccccchh
Q 038611 546 QRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSP-PLKELPAGLLPRLRKLCRLSLYFGWEA 621 (837)
Q Consensus 546 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~l~~~p~~~l~~l~~L~~L~l~~~~~~ 621 (837)
++| .++.+| .+..+++|++|++++|.+..+|. .+.++++|++|++++| .+..++.+.+.++++|++|++. .+..
T Consensus 120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l 197 (440)
T 3zyj_A 120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA-MCNL 197 (440)
T ss_dssp CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT-TSCC
T ss_pred CCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC-CCcC
Confidence 996 567776 48999999999999999998876 5789999999999985 4778888779999999999994 4433
Q ss_pred hhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcc
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPI 701 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 701 (837)
.. +..+..+ .+|+.|+++.|.+..+... .+
T Consensus 198 ~~--~~~~~~l-~~L~~L~Ls~N~l~~~~~~-----------------------------------------------~~ 227 (440)
T 3zyj_A 198 RE--IPNLTPL-IKLDELDLSGNHLSAIRPG-----------------------------------------------SF 227 (440)
T ss_dssp SS--CCCCTTC-SSCCEEECTTSCCCEECTT-----------------------------------------------TT
T ss_pred cc--ccccCCC-cccCEEECCCCccCccChh-----------------------------------------------hh
Confidence 32 2246777 8999999988866542110 01
Q ss_pred cCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEecccc
Q 038611 702 VLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCD 776 (837)
Q Consensus 702 ~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 776 (837)
..+++|+.|++.++......+..+ ..++ +|+.|+|++| .++.+++ ..+..+++|+.|++++++
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~-~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAF---------DNLQ-SLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSS---------TTCT-TCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCceeEEChhhh---------cCCC-CCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence 224666666665554221112221 2445 7777777775 5555533 345566777777776654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=2.2e-17 Score=185.11 Aligned_cols=190 Identities=26% Similarity=0.288 Sum_probs=162.0
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. ...+++.+++++|.+..+++..+..+++|+.|++++| .+..++...|.++++|++|+|++|.+..+
T Consensus 62 ~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 62 TRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 34556677753 3468999999999999998888899999999999999 78888877789999999999999999988
Q ss_pred Chh-hhcccccceecccCccccCCCc--cccccCCCCEEeccCC-cCccccc-cccCCCCCCEEeccCCCCCCCCCCccc
Q 038611 531 PNS-VSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGT-SIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLP 605 (837)
Q Consensus 531 p~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~ 605 (837)
|.. +..+++|++|+|++|. ++.+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|.+..+|. +.
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~ 215 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT 215 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CT
T ss_pred ChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--cc
Confidence 854 7889999999999964 66666 5899999999999996 7788876 47899999999999999999875 78
Q ss_pred CCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccc
Q 038611 606 RLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 606 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
.+++|+.|++ ..+.........+..+ ++|+.|+++.|.+..
T Consensus 216 ~l~~L~~L~L-s~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 216 PLVGLEELEM-SGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSL 256 (452)
T ss_dssp TCTTCCEEEC-TTSCCSEECGGGGTTC-TTCCEEECTTSCCCE
T ss_pred ccccccEEEC-cCCcCcccCcccccCc-cCCCEEEeCCCcCce
Confidence 9999999999 5555555556678888 999999998887654
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=7.9e-17 Score=179.78 Aligned_cols=260 Identities=17% Similarity=0.122 Sum_probs=183.6
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
.+++.+++.+|.+..++.. .++|++|++++| .+..+|. |+++++|++|++++|.+..+|..+ .+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEEC
Confidence 6799999999998887542 268999999998 6777883 689999999999999998888643 58999999
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhh
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEET 625 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 625 (837)
++| .++.+|.++++++|++|++++|.+..+|... ++|++|++++|.+..+|. ++.+++|++|++. .+......
T Consensus 181 ~~n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~-~N~l~~l~ 253 (454)
T 1jl5_A 181 GNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYAD-NNLLKTLP 253 (454)
T ss_dssp CSS-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECC-SSCCSSCC
T ss_pred cCC-cCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc--cCCCCCCCEEECC-CCcCCccc
Confidence 996 5667888999999999999999888887643 589999999999988884 7899999999994 33333211
Q ss_pred HHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCC-ccccceeeeccchhhhhccCCCCcccCC
Q 038611 626 VEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDS-VIADLEVDRSVCLIANKICEKEKPIVLP 704 (837)
Q Consensus 626 ~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 704 (837)
..+ .+|+.|+++.|.+..++... .+|..+.+..+.....+. ...++.+.++++... .+ ...+
T Consensus 254 ----~~~-~~L~~L~l~~N~l~~l~~~~-----~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~-~i------~~~~ 316 (454)
T 1jl5_A 254 ----DLP-PSLEALNVRDNYLTDLPELP-----QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SL------CDLP 316 (454)
T ss_dssp ----SCC-TTCCEEECCSSCCSCCCCCC-----TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS-EE------CCCC
T ss_pred ----ccc-cccCEEECCCCcccccCccc-----CcCCEEECcCCccCcccCcCCcCCEEECcCCcCC-cc------cCCc
Confidence 124 78899999988877655322 345555554433221111 123445555444111 00 1224
Q ss_pred CCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhh
Q 038611 705 EDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEE 780 (837)
Q Consensus 705 ~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 780 (837)
++|+.|+++++. +..++. .++ +|+.|++++| .++.+|. .+++|++|++++|. +..
T Consensus 317 ~~L~~L~Ls~N~-l~~lp~------------~~~-~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 317 PSLEELNVSNNK-LIELPA------------LPP-RLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp TTCCEEECCSSC-CSCCCC------------CCT-TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSS
T ss_pred CcCCEEECCCCc-cccccc------------cCC-cCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCc
Confidence 678888887654 222332 234 8999999987 6777754 36799999999884 444
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=9.5e-17 Score=188.57 Aligned_cols=143 Identities=21% Similarity=0.258 Sum_probs=122.2
Q ss_pred EEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecccCc
Q 038611 470 RVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQRC 548 (837)
Q Consensus 470 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~ 548 (837)
.++-++.+++.+|.... +++++|++++| .+..+|+..|.++++|++|+|++|.|..+|+ .+.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~vP~~lp---~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP---FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCCCC---cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 34555567888887542 57999999999 7999998888999999999999999999875 6899999999999996
Q ss_pred cccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCC-CCcccCCccCcEEEccc
Q 038611 549 RRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELP-AGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 549 ~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p-~~~l~~l~~L~~L~l~~ 617 (837)
.++.+| .+.++++|++|++++|.+..+|.. ++++++|++|++++|.+..++ +..++.+++|++|++..
T Consensus 111 -~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 111 -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp -CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred -cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 577777 489999999999999999999874 799999999999999987653 23378999999999943
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.5e-17 Score=166.59 Aligned_cols=190 Identities=26% Similarity=0.391 Sum_probs=152.2
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. ....++.+++.+|.+..++...+..+++|++|++++| .+..+|..+|..+++|++|++++|.+..+
T Consensus 24 ~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 24 SSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred cCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 34455566653 3357899999999999888877888999999999988 67888888888899999999999998888
Q ss_pred Ch-hhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccC
Q 038611 531 PN-SVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPR 606 (837)
Q Consensus 531 p~-~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~ 606 (837)
|. .+..+++|++|++++|. ++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+..+|...+.+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 179 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc
Confidence 74 45788999999999854 55555 478899999999999988888876 688899999999999998888877888
Q ss_pred CccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccc
Q 038611 607 LRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 607 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 646 (837)
+++|++|++ ..+.........+..+ .+|+.|+++.|.+
T Consensus 180 l~~L~~L~L-~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 180 LTELKTLKL-DNNQLKRVPEGAFDSL-EKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEEC-CSSCCSCCCTTTTTTC-TTCCEEECCSSCB
T ss_pred CCCcCEEEC-CCCcCCcCCHHHhccc-cCCCEEEecCCCe
Confidence 999999999 4444444344456677 8889998887754
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.4e-17 Score=185.87 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=144.5
Q ss_pred CCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCccccccCCCCEE
Q 038611 487 PHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHL 566 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 566 (837)
..+++|++|++++| .+..+++..|..+++|++|+|++|.+...++ ++.+++|++|+|++| .++.+| ..++|++|
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL---VGPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE---ECTTCCEE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC---CCCCcCEE
Confidence 34567888888887 5666766666788888888888888776554 777888888888875 344444 23778888
Q ss_pred eccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHh-hhhhccCeeEEeecc
Q 038611 567 DLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETG-RLSDRLDTFEGHFSK 645 (837)
Q Consensus 567 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~ 645 (837)
++++|.+..+|.. .+++|++|++++|.+..+++..++.+++|+.|++ .++......+..+. .+ ++|+.|+++.|.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~l~~~l-~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELAASS-DTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC-TTSCCCEEEGGGGGGGT-TTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC-CCCCCCCcChHHHhhhC-CcccEEecCCCc
Confidence 8888877776653 4677888888888877765544777888888888 44444443444444 56 778888887776
Q ss_pred ccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcc
Q 038611 646 LNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVL 725 (837)
Q Consensus 646 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 725 (837)
+..++. ...+++|+.|+++++. +..++..+
T Consensus 181 l~~~~~-------------------------------------------------~~~l~~L~~L~Ls~N~-l~~~~~~~ 210 (487)
T 3oja_A 181 IYDVKG-------------------------------------------------QVVFAKLKTLDLSSNK-LAFMGPEF 210 (487)
T ss_dssp CCEEEC-------------------------------------------------CCCCTTCCEEECCSSC-CCEECGGG
T ss_pred cccccc-------------------------------------------------cccCCCCCEEECCCCC-CCCCCHhH
Confidence 543210 0124677777776664 22232222
Q ss_pred cccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccch
Q 038611 726 PREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSI 778 (837)
Q Consensus 726 ~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l 778 (837)
..++ +|+.|++++| .+..+|+ .+..+++|+.|++++|+-.
T Consensus 211 ---------~~l~-~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 211 ---------QSAA-GVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---------GGGT-TCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred ---------cCCC-CccEEEecCC-cCcccch--hhccCCCCCEEEcCCCCCc
Confidence 2455 7888888875 5666544 3566778888888877543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=8.3e-17 Score=171.26 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=180.5
Q ss_pred cccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCccccCCCccccccCCCCEEecc
Q 038611 491 ILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLR 569 (837)
Q Consensus 491 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~ 569 (837)
.++.++++.+ .+...+..++..+++|++|+|++|.+..++ ..+..+++|++|+|++|. ++..+.+..+++|++|+++
T Consensus 11 ~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECC
T ss_pred ceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECc
Confidence 3455566655 566667777788899999999999999876 689999999999999965 5545568999999999999
Q ss_pred CCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 570 GTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 570 ~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
+|.+..+|. +++|++|++++|.+..++.. .+++|++|++ ..+.........+..+ ++|+.|+++.|.+...
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l-~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYL-ANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEEC-CSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEE
T ss_pred CCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEEC-CCCCCCCccchhhhcc-CCCCEEECCCCCCCcc
Confidence 999887764 48999999999999888754 4678999999 5555544444456778 8999999988765432
Q ss_pred hhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccc
Q 038611 650 NIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQ 729 (837)
Q Consensus 650 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~ 729 (837)
+... +...+++|+.|+++++. +..++.
T Consensus 160 ~~~~----------------------------------------------~~~~l~~L~~L~L~~N~-l~~~~~------ 186 (317)
T 3o53_A 160 NFAE----------------------------------------------LAASSDTLEHLNLQYNF-IYDVKG------ 186 (317)
T ss_dssp EGGG----------------------------------------------GGGGTTTCCEEECTTSC-CCEEEC------
T ss_pred cHHH----------------------------------------------HhhccCcCCEEECCCCc-Cccccc------
Confidence 1100 01125788999997775 222221
Q ss_pred cccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcce
Q 038611 730 GLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKK 809 (837)
Q Consensus 730 ~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~ 809 (837)
...++ +|+.|++++| .++.+++ .+..+++|++|++++| .++.++. .+..+++|+.
T Consensus 187 ----~~~l~-~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~----------------~~~~l~~L~~ 241 (317)
T 3o53_A 187 ----QVVFA-KLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNN-KLVLIEK----------------ALRFSQNLEH 241 (317)
T ss_dssp ----CCCCT-TCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTS-CCCEECT----------------TCCCCTTCCE
T ss_pred ----ccccc-cCCEEECCCC-cCCcchh--hhcccCcccEEECcCC-cccchhh----------------HhhcCCCCCE
Confidence 12355 9999999997 6777755 3778999999999998 6766643 4567899999
Q ss_pred Eeccccccc
Q 038611 810 LEFHYLPEF 818 (837)
Q Consensus 810 L~L~~~p~L 818 (837)
|+|++++-.
T Consensus 242 L~l~~N~~~ 250 (317)
T 3o53_A 242 FDLRGNGFH 250 (317)
T ss_dssp EECTTCCCB
T ss_pred EEccCCCcc
Confidence 999998755
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.4e-17 Score=176.80 Aligned_cols=247 Identities=17% Similarity=0.124 Sum_probs=160.9
Q ss_pred CCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCc--ccChhhh-------cccccceecccCccccCCCc-c
Q 038611 487 PHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIE--VLPNSVS-------DLMNLISLLLQRCRRLKRVP-S 556 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~l~~lp-~ 556 (837)
...++|+.|++++| .+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|++++|.....+| .
T Consensus 40 ~~~~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccc-cc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44567788888887 45 777766443 788888888774 3566555 68888888888876555677 5
Q ss_pred c--cccCCCCEEeccCCcCccccccccCC-----CCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh--hHH
Q 038611 557 V--AKLLALQHLDLRGTSIEEVPEGMQML-----ENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE--TVE 627 (837)
Q Consensus 557 ~--~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~--~~~ 627 (837)
+ ..+++|++|++++|.+..+|..++.+ ++|++|++++|.+..++...++++++|++|++ ..+..... .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL-SDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC-CSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC-CCCCcCcchHHHH
Confidence 4 88888999999988888777777666 88999999888888887666888889999988 43433222 233
Q ss_pred HH--hhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCC
Q 038611 628 ET--GRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPE 705 (837)
Q Consensus 628 ~l--~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 705 (837)
.+ ..+ ++|+.|+++.|.+..++...... +..++
T Consensus 194 ~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~--------------------------------------------~~~l~ 228 (312)
T 1wwl_A 194 ALCPLKF-PTLQVLALRNAGMETPSGVCSAL--------------------------------------------AAARV 228 (312)
T ss_dssp HSCTTSC-TTCCEEECTTSCCCCHHHHHHHH--------------------------------------------HHTTC
T ss_pred HHHhccC-CCCCEEECCCCcCcchHHHHHHH--------------------------------------------HhcCC
Confidence 44 677 88888888887765433211100 11235
Q ss_pred CCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccc
Q 038611 706 DVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVE 785 (837)
Q Consensus 706 ~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~ 785 (837)
+|+.|+++++.-....+.. ....++ +|+.|++++| .++.+|. .+. ++|++|+++++ .++.++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~--------~~~~l~-~L~~L~Ls~N-~l~~ip~--~~~--~~L~~L~Ls~N-~l~~~p--- 290 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAP--------SCDWPS-QLNSLNLSFT-GLKQVPK--GLP--AKLSVLDLSYN-RLDRNP--- 290 (312)
T ss_dssp CCSEEECTTSCCCSSCCCS--------CCCCCT-TCCEEECTTS-CCSSCCS--SCC--SEEEEEECCSS-CCCSCC---
T ss_pred CCCEEECCCCcCCcccchh--------hhhhcC-CCCEEECCCC-ccChhhh--hcc--CCceEEECCCC-CCCCCh---
Confidence 6777777665422111100 011234 7777777775 4555543 222 57777777776 454442
Q ss_pred cchhhhhcccccccccccCCCcceEeccccc
Q 038611 786 DEETEKELGTITIINILTLPRLKKLEFHYLP 816 (837)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p 816 (837)
....+|+|+.|+|++++
T Consensus 291 --------------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 --------------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------------CTTTSCEEEEEECTTCT
T ss_pred --------------hHhhCCCCCEEeccCCC
Confidence 23457777777777754
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=3.5e-16 Score=163.78 Aligned_cols=177 Identities=27% Similarity=0.268 Sum_probs=145.8
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
.+++.+++.++.+..+|.... ++++.|++++| .+..++...|..+++|++|+|++|.+..+|.. +.+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 467888999999998887653 68899999998 67777777778999999999999999888754 78899999999
Q ss_pred cCccccCCCc-cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhh
Q 038611 546 QRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALE 623 (837)
Q Consensus 546 ~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~ 623 (837)
++| .++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+..+|.+.+..+++|+.|++ ..+....
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L-~~N~l~~ 162 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTE 162 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC-TTSCCSC
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC-CCCcCCc
Confidence 985 577888 68899999999999999988875 5788999999999999999998887889999999999 4444444
Q ss_pred hhHHHHhhhhhccCeeEEeeccccchh
Q 038611 624 ETVEETGRLSDRLDTFEGHFSKLNNFN 650 (837)
Q Consensus 624 ~~~~~l~~l~~~L~~L~l~~~~~~~~~ 650 (837)
.....+..+ ++|+.|+++.|.+..++
T Consensus 163 l~~~~~~~l-~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 163 LPAGLLNGL-ENLDTLLLQENSLYTIP 188 (290)
T ss_dssp CCTTTTTTC-TTCCEEECCSSCCCCCC
T ss_pred cCHHHhcCc-CCCCEEECCCCcCCccC
Confidence 444456678 88999999888766544
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1.6e-15 Score=174.53 Aligned_cols=251 Identities=21% Similarity=0.185 Sum_probs=184.5
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|... ..+++.+++.+|.+..+|. .+++|++|++++| .+..+|. .+++|++|+|++|.+..+
T Consensus 48 s~n~L~~lp~~l--~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~l 116 (622)
T 3g06_A 48 GESGLTTLPDCL--PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHL 116 (622)
T ss_dssp CSSCCSCCCSCC--CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCCCCCC
T ss_pred cCCCcCccChhh--CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCcCCCC
Confidence 344556666543 2689999999999998876 4689999999999 6888886 679999999999999999
Q ss_pred ChhhhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccC
Q 038611 531 PNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL 610 (837)
Q Consensus 531 p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L 610 (837)
|. .+.+|++|++++| .++.+|. .+++|++|++++|.+..+|.. +++|+.|++++|.++.+| ..+++|
T Consensus 117 ~~---~l~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~~~L 183 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP----MLPSGL 183 (622)
T ss_dssp CC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC----CCCTTC
T ss_pred CC---CCCCcCEEECCCC-CCCcCCC--CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc----ccCCCC
Confidence 86 6789999999995 5777884 248999999999999988863 578999999999999988 346889
Q ss_pred cEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchh
Q 038611 611 CRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLI 690 (837)
Q Consensus 611 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 690 (837)
+.|++ .++...... ..+ .+|+.|+++.|.+..++... .+|. .+.++++.
T Consensus 184 ~~L~L-s~N~l~~l~----~~~-~~L~~L~L~~N~l~~l~~~~-----~~L~-------------------~L~Ls~N~- 232 (622)
T 3g06_A 184 QELSV-SDNQLASLP----TLP-SELYKLWAYNNRLTSLPALP-----SGLK-------------------ELIVSGNR- 232 (622)
T ss_dssp CEEEC-CSSCCSCCC----CCC-TTCCEEECCSSCCSSCCCCC-----TTCC-------------------EEECCSSC-
T ss_pred cEEEC-CCCCCCCCC----Ccc-chhhEEECcCCcccccCCCC-----CCCC-------------------EEEccCCc-
Confidence 99999 444333211 124 78899999988776654321 2233 33333331
Q ss_pred hhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEE
Q 038611 691 ANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECL 770 (837)
Q Consensus 691 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L 770 (837)
+..+. ..+++|+.|+++++. +..+|. .++ +|+.|++++| .++.+|. .+..+++|+.|
T Consensus 233 L~~lp------~~l~~L~~L~Ls~N~-L~~lp~------------~~~-~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L 289 (622)
T 3g06_A 233 LTSLP------VLPSELKELMVSGNR-LTSLPM------------LPS-GLLSLSVYRN-QLTRLPE--SLIHLSSETTV 289 (622)
T ss_dssp CSCCC------CCCTTCCEEECCSSC-CSCCCC------------CCT-TCCEEECCSS-CCCSCCG--GGGGSCTTCEE
T ss_pred cCcCC------CCCCcCcEEECCCCC-CCcCCc------------ccc-cCcEEeCCCC-CCCcCCH--HHhhccccCEE
Confidence 11111 235789999998774 333332 234 8999999997 6777754 47789999999
Q ss_pred Eeccccchh
Q 038611 771 EVCGCDSIE 779 (837)
Q Consensus 771 ~l~~c~~l~ 779 (837)
++++|+--.
T Consensus 290 ~L~~N~l~~ 298 (622)
T 3g06_A 290 NLEGNPLSE 298 (622)
T ss_dssp ECCSCCCCH
T ss_pred EecCCCCCC
Confidence 999986433
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=8.1e-16 Score=159.56 Aligned_cols=175 Identities=26% Similarity=0.387 Sum_probs=148.4
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhh-hcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSV-SDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L 545 (837)
..+.+++.++.+..+|.... ++|+.|++++| .+..++...|.++++|++|+|++|.+..+|..+ ..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46789999999999987543 68999999999 688888877899999999999999999998664 78999999999
Q ss_pred cCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhh
Q 038611 546 QRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEAL 622 (837)
Q Consensus 546 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 622 (837)
++| .++.+| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.+..+|...++.+++|+.|++ ..+...
T Consensus 93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~ 170 (270)
T 2o6q_A 93 TDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLK 170 (270)
T ss_dssp CSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-CSSCCS
T ss_pred CCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe-cCCcCc
Confidence 996 466666 478999999999999999988764 689999999999999999999887899999999999 444444
Q ss_pred hhhHHHHhhhhhccCeeEEeeccccc
Q 038611 623 EETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 623 ~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
......+..+ ++|+.|+++.|.+..
T Consensus 171 ~~~~~~~~~l-~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 171 RVPEGAFDKL-TELKTLKLDNNQLKR 195 (270)
T ss_dssp CCCTTTTTTC-TTCCEEECCSSCCSC
T ss_pred EeChhHhccC-CCcCEEECCCCcCCc
Confidence 4444557778 899999998876543
No 72
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=5.7e-15 Score=159.61 Aligned_cols=293 Identities=13% Similarity=0.112 Sum_probs=171.7
Q ss_pred CCccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc------CHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL------DLIKL 179 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~~~~~ 179 (837)
.+..++|| +++++.|.+++..+ +++.|+|++|+|||||++++++.. + .+|+++.... +...+
T Consensus 10 ~~~~~~gR--~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDR--EEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSC--HHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCCh--HHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHH
Confidence 44579999 77888888887654 899999999999999999998763 1 6788765432 55666
Q ss_pred HHHHHHHhcC-----------------CCCC-CccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc---------cccccc
Q 038611 180 QTEIATALKE-----------------SLPE-NEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP---------LEKVGI 232 (837)
Q Consensus 180 ~~~i~~~l~~-----------------~~~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~l~~ 232 (837)
...+...+.. ..+. ..........+.+.....++.+|||||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666665532 0000 012222222232222122389999999976432 111111
Q ss_pred CCCCCCCCcEEEEEeCChhH-hhh----------C-Ccc-eEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHH
Q 038611 233 PEPNKENGCKLVITTRSYRV-CRS----------M-KCK-QVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVE 299 (837)
Q Consensus 233 ~~~~~~~~s~iivTtR~~~v-~~~----------~-~~~-~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 299 (837)
.. ....+..+|+|++...+ ... . ... .+.+.+|+.+++.+++...+....... -.+.+..|+.
T Consensus 158 ~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~ 233 (350)
T 2qen_A 158 AY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVE 233 (350)
T ss_dssp HH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHH
T ss_pred HH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Confidence 11 11246789999987653 211 1 112 389999999999999987654321112 3457889999
Q ss_pred HhCCchhHHHHHHHhccCCcCHHHHH-HHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCCCcccC
Q 038611 300 ECGCLPLAIVTVAASMSGEEEIYEWQ-NALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPKNFLIL 378 (837)
Q Consensus 300 ~c~GlPLai~~~~~~l~~~~~~~~w~-~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~ 378 (837)
.|+|+|+++..++..+....+...+. ...+..... ....+. .+.+ + + +..+..+..+|. . . ..
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~---~l~~-~-~-~~~~~~l~~la~-g-~--~~ 297 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL------IMGELE---ELRR-R-S-PRYVDILRAIAL-G-Y--NR 297 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHH---HHHH-H-C-HHHHHHHHHHHT-T-C--CS
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH------HHHHHH---HHHh-C-C-hhHHHHHHHHHh-C-C--CC
Confidence 99999999999887543212222221 111111000 001111 1112 2 5 678899998887 2 1 33
Q ss_pred HHHHHHHHHHhCCCccchhHHHHHHhHHHHHHHHHhhcccccccccceeeehhHHHHHHH
Q 038611 379 KDELIDYWIAEGVIEELKDVQAKYDRGHTILNRLVNCCLLESARYGRCVKMHDLIRDMAL 438 (837)
Q Consensus 379 ~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~d~a~ 438 (837)
...+.....+. .- . ........+++.|.+.+++.... +.+...|++++++.+
T Consensus 298 ~~~l~~~~~~~-~~-~-----~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVK-GT-K-----IPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHT-TC-C-----CCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHH-hC-C-----CCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 34443332221 10 0 01234567899999999998753 333445888887753
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=2.1e-15 Score=157.11 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=77.7
Q ss_pred cccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecccCccccC
Q 038611 474 MMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQRCRRLK 552 (837)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~ 552 (837)
....+..+|.... ++|++|++++| .+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|. ++
T Consensus 15 ~~~~l~~ip~~l~---~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 15 MELNFYKIPDNLP---FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp TTSCCSSCCSSSC---TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred cCCCccccCCCCC---CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cC
Confidence 3344444544321 35666666666 4555555445666666666666666655543 45666666666666643 33
Q ss_pred CCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCC--CCCCcccCCccCcEEEc
Q 038611 553 RVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKE--LPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 553 ~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--~p~~~l~~l~~L~~L~l 615 (837)
.++ .+.++++|++|++++|.+..++. .++++++|++|++++|.+.. +|.. ++++++|++|++
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~L 156 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDL 156 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEEC
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEEC
Confidence 333 46666666666666666655544 45666666666666666654 3333 566666666666
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=6.4e-16 Score=160.98 Aligned_cols=159 Identities=23% Similarity=0.282 Sum_probs=134.4
Q ss_pred ccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-
Q 038611 453 EHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP- 531 (837)
Q Consensus 453 ~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp- 531 (837)
..+..+|.. ...+++.+++.+|.+..++...+..+++|++|++++| .+..++...|.++++|++|+|++|.+..++
T Consensus 17 ~~l~~ip~~--l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 17 LNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp SCCSSCCSS--SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccccCCC--CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 345556653 3457999999999999998877889999999999999 788888877899999999999999998776
Q ss_pred hhhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcc--ccccccCCCCCCEEeccCCCCCCCCCCcccCC
Q 038611 532 NSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEE--VPEGMQMLENLSHLYLYSPPLKELPAGLLPRL 607 (837)
Q Consensus 532 ~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l 607 (837)
..+..+++|++|++++|. +..++ .++++++|++|++++|.+.. +|..+.++++|++|++++|.+..++...+..+
T Consensus 94 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 678999999999999965 45454 59999999999999998886 68899999999999999999988876556666
Q ss_pred ccCc----EEEc
Q 038611 608 RKLC----RLSL 615 (837)
Q Consensus 608 ~~L~----~L~l 615 (837)
++|+ .|++
T Consensus 173 ~~L~~l~l~L~l 184 (276)
T 2z62_A 173 HQMPLLNLSLDL 184 (276)
T ss_dssp HTCTTCCEEEEC
T ss_pred hhccccceeeec
Confidence 6555 5666
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.8e-15 Score=155.06 Aligned_cols=158 Identities=27% Similarity=0.385 Sum_probs=92.3
Q ss_pred cccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-h
Q 038611 454 HLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-N 532 (837)
Q Consensus 454 ~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~ 532 (837)
.+..+|.. ....++.+++.+|.+..+++..+..+++|++|++++| .+..++...|..+++|++|+|++|.+..+| .
T Consensus 25 ~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 25 SLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 34444432 2245666666666666665555556666666666666 455555555566666666666666666555 2
Q ss_pred hhhcccccceecccCccccCCCc-c-ccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCcc
Q 038611 533 SVSDLMNLISLLLQRCRRLKRVP-S-VAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRK 609 (837)
Q Consensus 533 ~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~ 609 (837)
.+..+++|++|+|++| .++.+| . +.++++|++|++++|.+..+|. .+..+++|++|++++|.+..+|...+..+++
T Consensus 102 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 3456666666666664 344444 2 4566666666666666666555 3556666666666666666665544566666
Q ss_pred CcEEEc
Q 038611 610 LCRLSL 615 (837)
Q Consensus 610 L~~L~l 615 (837)
|+.|++
T Consensus 181 L~~L~l 186 (251)
T 3m19_A 181 LQTITL 186 (251)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 666666
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=4.5e-16 Score=181.17 Aligned_cols=339 Identities=12% Similarity=0.033 Sum_probs=207.8
Q ss_pred cccccEEEccccCCCCCCC----CCCCCCCcccEEEccCCcCccccC----hhHhhcCCCCcEEEecCCCCcccChhhhc
Q 038611 465 KANLERVSLMMNDIDEIPS----NMSPHCEILSTLLLQRNINLQWIP----ECFFAHMHGLKILNLSFTAIEVLPNSVSD 536 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 536 (837)
.++++.+++.+|.+..... .....+++|++|+++++ .+..+. ..++.++++|++|++++|.+..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 3578899998887654321 12346789999999888 443222 23457889999999999988888888899
Q ss_pred ccccceecccCcccc---CCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCC-CCcccCCccCc
Q 038611 537 LMNLISLLLQRCRRL---KRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELP-AGLLPRLRKLC 611 (837)
Q Consensus 537 l~~L~~L~L~~~~~l---~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p-~~~l~~l~~L~ 611 (837)
+++|+.|+++++... ...+ .+..+++|+.|+++++....+|..+..+++|++|++++|.+.... ...+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 999999999864433 2233 578888999999988777778888888999999999998854321 12357889999
Q ss_pred EEEccccchhhhhhHHHH-hhhhhccCeeEEee-----------ccccchhhhhhcccCCccceEEEEeccCcCC-----
Q 038611 612 RLSLYFGWEALEETVEET-GRLSDRLDTFEGHF-----------SKLNNFNIYVKSSDGRESEKYCLMLSPDYVG----- 674 (837)
Q Consensus 612 ~L~l~~~~~~~~~~~~~l-~~l~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~----- 674 (837)
+|++. .......+..+ ..+ ++|+.|+++. +.+.......-...+.+|+.+.+........
T Consensus 322 ~L~L~--~~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 322 VLETR--NVIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp EEEEE--GGGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred EEecc--CccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 99994 33344444444 456 8899999983 3333211111122345677776644333110
Q ss_pred -CCccccceeeeccchhhhhccCC---C---CcccCCCCCcEEEEeeecc-hhh-hhhcccccccccccccccccccEEE
Q 038611 675 -DSVIADLEVDRSVCLIANKICEK---E---KPIVLPEDVQCLEMFEVYD-IAS-LNDVLPREQGLVNIGKFSHDLKVLR 745 (837)
Q Consensus 675 -~~~~~~~~l~l~~~~~~~~~~~~---~---~~~~~~~~L~~L~l~~~~~-~~~-l~~~~~~L~~L~~~~~~~~~L~~L~ 745 (837)
.....++.+.+..+..-..+... . ..+..+++|+.|+++.|.+ +.. .+..+ ...++ +|+.|+
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~--------~~~~~-~L~~L~ 469 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--------GQYSP-NVRWML 469 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH--------HHSCT-TCCEEE
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH--------HHhCc-cceEee
Confidence 01233555555533100011100 0 0023467888888876553 111 11111 11345 899999
Q ss_pred EecCCCCCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccccccccccCCC
Q 038611 746 FYYCNNLKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCSDN 825 (837)
Q Consensus 746 l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~~~ 825 (837)
|++|. +++......+..+++|++|++++|+ +..... ......+|+|+.|+|++|+ +.......
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~--------------~~~~~~l~~L~~L~ls~n~-it~~~~~~ 532 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAI--------------AAAVTKLPSLRYLWVQGYR-ASMTGQDL 532 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHH--------------HHHHHHCSSCCEEEEESCB-CCTTCTTG
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHH--------------HHHHHhcCccCeeECcCCc-CCHHHHHH
Confidence 99874 5543333355678899999999997 432100 0023458999999999987 55443322
Q ss_pred CcccCCCC
Q 038611 826 GVLVCDPL 833 (837)
Q Consensus 826 ~~~~~~sL 833 (837)
....+|.|
T Consensus 533 l~~~~p~l 540 (592)
T 3ogk_B 533 MQMARPYW 540 (592)
T ss_dssp GGGCCTTE
T ss_pred HHHhCCCc
Confidence 23345544
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=3.1e-15 Score=158.16 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=140.1
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
..+++.+++.++.+..++. +..+++|++|++++| .+..++. +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 3578999999998888763 578899999999988 6777776 689999999999999988876 688999999999
Q ss_pred ccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 545 LQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 545 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
+++| .++.+|.+..+++|++|++++|.+..+|. +..+++|++|++++|.+..++. +..+++|+.|++ ..+.....
T Consensus 114 l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l-~~n~l~~~ 188 (308)
T 1h6u_A 114 LTST-QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA-DDNKISDI 188 (308)
T ss_dssp CTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC-CSSCCCCC
T ss_pred CCCC-CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC-CCCccCcC
Confidence 9986 46777788899999999999998888876 8889999999999999888776 788999999999 44433322
Q ss_pred hHHHHhhhhhccCeeEEeeccccch
Q 038611 625 TVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
. .+..+ ++|+.|+++.|.+...
T Consensus 189 ~--~l~~l-~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 189 S--PLASL-PNLIEVHLKNNQISDV 210 (308)
T ss_dssp G--GGGGC-TTCCEEECTTSCCCBC
T ss_pred h--hhcCC-CCCCEEEccCCccCcc
Confidence 2 26778 8899999988776543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.3e-15 Score=159.39 Aligned_cols=187 Identities=25% Similarity=0.218 Sum_probs=156.9
Q ss_pred cccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC
Q 038611 452 REHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP 531 (837)
Q Consensus 452 ~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp 531 (837)
+..+..+|.. ....++.+++.+|.+..+++..+..+++|+.|++++| .+..++.. ..+++|++|++++|.+..+|
T Consensus 19 ~~~l~~ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~ 93 (290)
T 1p9a_G 19 KRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQLQSLP 93 (290)
T ss_dssp TSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSCCSSCC
T ss_pred CCCCCcCCCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC--CCCCcCCEEECCCCcCCcCc
Confidence 3445666653 3468999999999999988777899999999999999 67777763 78999999999999999999
Q ss_pred hhhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCc
Q 038611 532 NSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLR 608 (837)
Q Consensus 532 ~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~ 608 (837)
..+..+++|++|++++| .++.+| .+.++++|++|++++|.+..+|.+ +..+++|++|++++|.++.+|.+.+.+++
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 99999999999999996 566665 599999999999999999998876 47899999999999999999998889999
Q ss_pred cCcEEEccccchhhhhhHHHHhhhhhccCeeEEeecccc
Q 038611 609 KLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 609 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
+|+.|++ ..+... ..+..+..+ .+|+.|.++.|.+.
T Consensus 173 ~L~~L~L-~~N~l~-~ip~~~~~~-~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 173 NLDTLLL-QENSLY-TIPKGFFGS-HLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEEC-CSSCCC-CCCTTTTTT-CCCSEEECCSCCBC
T ss_pred CCCEEEC-CCCcCC-ccChhhccc-ccCCeEEeCCCCcc
Confidence 9999999 444433 223445566 78999999877553
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1e-16 Score=180.69 Aligned_cols=171 Identities=16% Similarity=0.095 Sum_probs=135.7
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
.+++.+++++|.+..+++..+..+++|++|++++| .+..+++ |..+++|++|+|++|.+..+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 47999999999999998877899999999999999 5665555 6899999999999999888774 389999999
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCCCCCCCcc-cCCccCcEEEccccchhhh
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLL-PRLRKLCRLSLYFGWEALE 623 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l-~~l~~L~~L~l~~~~~~~~ 623 (837)
++|. ++.+|. ..+++|++|++++|.+..+ |..++++++|++|++++|.+..+++..+ +.+++|+.|+++ .+....
T Consensus 107 ~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls-~N~l~~ 183 (487)
T 3oja_A 107 ANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ-YNFIYD 183 (487)
T ss_dssp CSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT-TSCCCE
T ss_pred cCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC-CCcccc
Confidence 9964 555552 2468899999999998876 4578899999999999999887544334 479999999994 443332
Q ss_pred hhHHHHhhhhhccCeeEEeeccccch
Q 038611 624 ETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 624 ~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
. .....+ ++|+.|+++.|.+..+
T Consensus 184 ~--~~~~~l-~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 184 V--KGQVVF-AKLKTLDLSSNKLAFM 206 (487)
T ss_dssp E--ECCCCC-TTCCEEECCSSCCCEE
T ss_pred c--cccccC-CCCCEEECCCCCCCCC
Confidence 2 122346 8899999998876653
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=8.6e-15 Score=149.99 Aligned_cols=175 Identities=26% Similarity=0.362 Sum_probs=150.1
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLL 545 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L 545 (837)
..+++++.++.+..+|.... ++++.|++++| .+..++...|.++++|++|+|++|.+..++. .+..+++|++|+|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 56789999999999987653 68999999999 6778887778999999999999999988764 5789999999999
Q ss_pred cCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhh
Q 038611 546 QRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEAL 622 (837)
Q Consensus 546 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~ 622 (837)
++|. ++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+..+|.+.++.+++|++|++ ..+...
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~N~l~ 168 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL-STNQLQ 168 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-CSSCCS
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC-CCCcCC
Confidence 9964 56666 589999999999999999999876 588999999999999999999877899999999999 555555
Q ss_pred hhhHHHHhhhhhccCeeEEeeccccc
Q 038611 623 EETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 623 ~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
......+..+ ++|+.|+++.|.+..
T Consensus 169 ~~~~~~~~~l-~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 SVPHGAFDRL-GKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTC-TTCCEEECCSCCBCT
T ss_pred ccCHHHHhCC-CCCCEEEeeCCceeC
Confidence 4444567788 999999999887643
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=8.2e-16 Score=156.39 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=154.5
Q ss_pred ccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecC-CCCcccC-h
Q 038611 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSF-TAIEVLP-N 532 (837)
Q Consensus 455 ~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~i~~lp-~ 532 (837)
+..+|. ...+++.+++.+|.+..+++..+..+++|++|++++|..+..++...|.++++|++|++++ |.+..+| .
T Consensus 23 l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 566775 4458999999999999999888899999999999999448889887789999999999998 8899887 4
Q ss_pred hhhcccccceecccCccccCCCccccccCCCC---EEeccCC-cCcccccc-ccCCCCCC-EEeccCCCCCCCCCCcccC
Q 038611 533 SVSDLMNLISLLLQRCRRLKRVPSVAKLLALQ---HLDLRGT-SIEEVPEG-MQMLENLS-HLYLYSPPLKELPAGLLPR 606 (837)
Q Consensus 533 ~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~l~~~p~~~l~~ 606 (837)
.+..+++|++|++++| .++.+|.+..+++|+ +|++++| .+..+|.. +..+++|+ +|++++|.++.+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 6789999999999996 467788888888888 9999999 99998875 78999999 9999999999999876655
Q ss_pred CccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccchh
Q 038611 607 LRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFN 650 (837)
Q Consensus 607 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 650 (837)
++|+.|++..+..........+..+..+|+.|+++.|.+..++
T Consensus 179 -~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp -CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred -CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 8999999944322333222233332157889999888776544
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=5.8e-14 Score=152.09 Aligned_cols=289 Identities=15% Similarity=0.151 Sum_probs=167.1
Q ss_pred CCccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-----cCHHHHH
Q 038611 106 PTETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LDLIKLQ 180 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~ 180 (837)
.+..++|| +++++.|.+ +.. +++.|+|++|+|||||++++++.. . . ..+|+++... .+...+.
T Consensus 11 ~~~~~~gR--~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDR--EKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCC--HHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcCh--HHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHH
Confidence 44589999 778889988 765 799999999999999999999875 1 1 2588887642 3444555
Q ss_pred HHHHHHhcC-------------C-----CCCCc-c------HHHHHHHHHHHHhc-C-CeEEEEEeCCCCCc-----ccc
Q 038611 181 TEIATALKE-------------S-----LPENE-D------KVSRAGRLLGMLKA-K-AKFVLILDDMWEAF-----PLE 228 (837)
Q Consensus 181 ~~i~~~l~~-------------~-----~~~~~-~------~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~-----~~~ 228 (837)
..+.+.+.. . .+... . .......+.+.+.. . ++.+|||||++... ++.
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 444443310 0 00000 0 00112233333322 1 48999999997532 222
Q ss_pred ccccCCCCCCCCcEEEEEeCChhHhh-h---------C-Cc--ceEEeccCCHHhHHHHHHHHhCCC-CCCCchhhHHHH
Q 038611 229 KVGIPEPNKENGCKLVITTRSYRVCR-S---------M-KC--KQVEVELLSKEEAFNLFIDRVGSS-ILQVPTLNREII 294 (837)
Q Consensus 229 ~l~~~~~~~~~~s~iivTtR~~~v~~-~---------~-~~--~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~ 294 (837)
.+...+.....+..+|+|++...... . . +. ..+.+.+|+.+++.+++...+... ...+ . .
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~---~ 232 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK---D---Y 232 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC---C---H
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC---c---H
Confidence 21111111124678999999865321 1 1 11 238999999999999998765321 1111 1 1
Q ss_pred HHHHHHhCCchhHHHHHHHhccCCcCHHHHHH-HHHHHHhccccCCCCchhhhhhhH-hhh--hcCCchhhHHHHhhhcc
Q 038611 295 NSIVEECGCLPLAIVTVAASMSGEEEIYEWQN-ALNELRGRLRSLNDVDTKVFGRLE-FSY--HRLKDEKLRQCFLYCAL 370 (837)
Q Consensus 295 ~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~cfl~~s~ 370 (837)
..|++.|+|+|+++..++..+....+...|.. ..+... ..+..-+. +.+ ..|+ +..+..+..+|.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~-~~~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIAR-KRYLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGH-HHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhcccccc-HHHHHHHHHHHc
Confidence 78999999999999999877643223333321 111110 01111111 111 1577 788999999988
Q ss_pred CCCCcccCHHHHHHHHH-HhCC-CccchhHHHHHHhHHHHHHHHHhhcccccccccceeeehhHHHHHH
Q 038611 371 YPKNFLILKDELIDYWI-AEGV-IEELKDVQAKYDRGHTILNRLVNCCLLESARYGRCVKMHDLIRDMA 437 (837)
Q Consensus 371 fp~~~~i~~~~li~~w~-aeg~-i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~d~a 437 (837)
-+ ....+....- ..|. + .......+++.|.+.+++.... +.+...|++++++.
T Consensus 302 g~-----~~~~l~~~~~~~~g~~~--------~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 CG-----KWSDVKRALELEEGIEI--------SDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CB-----CHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CC-----CHHHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 21 3333332110 1121 1 1234567899999999998754 33344688888764
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=6.2e-15 Score=152.99 Aligned_cols=174 Identities=25% Similarity=0.327 Sum_probs=131.3
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh-hhccccccee
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS-VSDLMNLISL 543 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 543 (837)
..+++.+.+.+|.+..++. +..+++|++|++++| .+..++ .+..+++|++|++++|.+..+|.. +..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3568888888888777653 467888888888888 566554 357888888888888888877644 5788888888
Q ss_pred cccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccch
Q 038611 544 LLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWE 620 (837)
Q Consensus 544 ~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 620 (837)
++++|. ++.+| .++++++|++|++++|.+..+|.. +..+++|++|++++|.+..+|...++.+++|++|++ ..+.
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-~~N~ 192 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQ 192 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-CSSC
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC-CCCc
Confidence 888864 55555 378888888888888888887765 478888888888888888887776788888888888 4444
Q ss_pred hhhhhHHHHhhhhhccCeeEEeeccc
Q 038611 621 ALEETVEETGRLSDRLDTFEGHFSKL 646 (837)
Q Consensus 621 ~~~~~~~~l~~l~~~L~~L~l~~~~~ 646 (837)
........+..+ ++|+.|+++.|.+
T Consensus 193 l~~~~~~~~~~l-~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LKSVPDGVFDRL-TSLQYIWLHDNPW 217 (272)
T ss_dssp CSCCCTTTTTTC-TTCCEEECCSSCB
T ss_pred CCccCHHHHhCC-cCCCEEEccCCCc
Confidence 444444456777 8888888877654
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1e-14 Score=154.25 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=153.7
Q ss_pred cccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh
Q 038611 454 HLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS 533 (837)
Q Consensus 454 ~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 533 (837)
.+..+|. .....+++.+++.+|.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|.+..+|.
T Consensus 52 ~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 124 (308)
T 1h6u_A 52 GVTTIEG-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQITDVTP- 124 (308)
T ss_dssp CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCGG--GTTCTTCCEEECTTSCCCCCGG-
T ss_pred CccCchh-hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCchh--hcCCCCCCEEECCCCCCCCchh-
Confidence 3444553 3445789999999999999877 689999999999999 5777763 6899999999999999998875
Q ss_pred hhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEE
Q 038611 534 VSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRL 613 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 613 (837)
+..+++|++|++++| .++.+|.+..+++|++|++++|.+..+|. +..+++|++|++++|.+..++. +..+++|++|
T Consensus 125 l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEV 200 (308)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence 899999999999996 57777779999999999999999998887 8999999999999999998876 7899999999
Q ss_pred EccccchhhhhhHHHHhhhhhccCeeEEeeccccchh
Q 038611 614 SLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNFN 650 (837)
Q Consensus 614 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 650 (837)
++ ..+...... .+..+ ++|+.|+++.|.+...+
T Consensus 201 ~L-~~N~l~~~~--~l~~l-~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 201 HL-KNNQISDVS--PLANT-SNLFIVTLTNQTITNQP 233 (308)
T ss_dssp EC-TTSCCCBCG--GGTTC-TTCCEEEEEEEEEECCC
T ss_pred Ec-cCCccCccc--cccCC-CCCCEEEccCCeeecCC
Confidence 99 444443332 37788 99999999998776543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.5e-16 Score=179.03 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=15.7
Q ss_pred CCcEEEecCCCCc-----ccChhhhcccccceecccCc
Q 038611 516 GLKILNLSFTAIE-----VLPNSVSDLMNLISLLLQRC 548 (837)
Q Consensus 516 ~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~ 548 (837)
+|++|+|++|.+. .+|..+..+++|++|++++|
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 3555555555443 23444444555555555543
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=1.7e-16 Score=178.69 Aligned_cols=198 Identities=17% Similarity=0.140 Sum_probs=136.4
Q ss_pred ccccEEEccccCCCCCCC-CCCCCCCcccEEEccCCcCcc-----ccChhHhhcCCCCcEEEecCCCCccc-Chhhh-cc
Q 038611 466 ANLERVSLMMNDIDEIPS-NMSPHCEILSTLLLQRNINLQ-----WIPECFFAHMHGLKILNLSFTAIEVL-PNSVS-DL 537 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~-~l 537 (837)
.+++++++.+|.+...+. ..+..+++|++|++++| .+. .++. .+..+++|++|+|++|.+... +..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 468889999988765532 22567899999999999 454 2333 457889999999999998652 33333 35
Q ss_pred c----ccceecccCccccC----CCc-cccccCCCCEEeccCCcCccc-----cccc-cCCCCCCEEeccCCCCCCCC--
Q 038611 538 M----NLISLLLQRCRRLK----RVP-SVAKLLALQHLDLRGTSIEEV-----PEGM-QMLENLSHLYLYSPPLKELP-- 600 (837)
Q Consensus 538 ~----~L~~L~L~~~~~l~----~lp-~~~~l~~L~~L~l~~~~i~~l-----p~~~-~~l~~L~~L~l~~~~l~~~p-- 600 (837)
. +|++|++++|..-. .+| .+.++++|++|++++|.+... ...+ ...++|++|++++|.+....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 5 69999999975332 456 689999999999999987642 2222 23568999999999877532
Q ss_pred --CCcccCCccCcEEEccccchhhhhhHHHHhh-----hhhccCeeEEeeccccch-----hhhhhcccCCccceEEEEe
Q 038611 601 --AGLLPRLRKLCRLSLYFGWEALEETVEETGR-----LSDRLDTFEGHFSKLNNF-----NIYVKSSDGRESEKYCLML 668 (837)
Q Consensus 601 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-----l~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~~~~~~ 668 (837)
...+..+++|++|++ ..+......+..+.. . .+|+.|+++.|.+... +..+. ...+|..+.+..
T Consensus 161 ~l~~~l~~~~~L~~L~L-~~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTV-SNNDINEAGVRVLCQGLKDSP-CQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHCTTCCEEEC-CSSBCHHHHHHHHHHHHHHSC-CCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCS
T ss_pred HHHHHHhhCCCCCEEEC-cCCCcchHHHHHHHHHHhcCC-CCceEEEccCCCCcHHHHHHHHHHHH--hCCCccEEeccC
Confidence 122567889999999 445455555555443 3 4899999998877652 22222 334566665554
Q ss_pred c
Q 038611 669 S 669 (837)
Q Consensus 669 ~ 669 (837)
+
T Consensus 237 n 237 (461)
T 1z7x_W 237 N 237 (461)
T ss_dssp S
T ss_pred C
Confidence 4
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=2.3e-15 Score=162.47 Aligned_cols=237 Identities=19% Similarity=0.125 Sum_probs=143.4
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCC-cccCh-hhhcccccceeccc
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAI-EVLPN-SVSDLMNLISLLLQ 546 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i-~~lp~-~i~~l~~L~~L~L~ 546 (837)
+.+...+++++++|.... ++++.|++++| .+..+|.+.|.++++|++|+|++|.+ +.+|. .+.++++|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcC---CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 446666777787776542 56788888887 67778877778888888888888876 34553 45677776655444
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccC-CCCCCCCCCcccCCc-cCcEEEccccchh
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYS-PPLKELPAGLLPRLR-KLCRLSLYFGWEA 621 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~-~~l~~~p~~~l~~l~-~L~~L~l~~~~~~ 621 (837)
+++.++.+| .+..+++|++|++++|.+..+|.. +....++..|++.+ +.+..+|...+..+. .|+.|++ ..+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L-~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL-NKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC-CSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc-ccccc
Confidence 445666664 477778888888887777776653 34455666777655 346666665455543 4666666 22222
Q ss_pred hhhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcc
Q 038611 622 LEETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPI 701 (837)
Q Consensus 622 ~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 701 (837)
..... ..... .+|+.|.+.. +..+..+.. +.+
T Consensus 167 ~~i~~-~~f~~-~~L~~l~l~~--------------------------------------------~n~l~~i~~--~~f 198 (350)
T 4ay9_X 167 QEIHN-SAFNG-TQLDELNLSD--------------------------------------------NNNLEELPN--DVF 198 (350)
T ss_dssp CEECT-TSSTT-EEEEEEECTT--------------------------------------------CTTCCCCCT--TTT
T ss_pred cCCCh-hhccc-cchhHHhhcc--------------------------------------------CCcccCCCH--HHh
Confidence 11110 11112 2333333321 111111111 113
Q ss_pred cCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEecc
Q 038611 702 VLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCG 774 (837)
Q Consensus 702 ~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 774 (837)
..+++|+.|+++++. +..+|. +.|. +|+.|.+.+|.+++.+|+ +..|++|+.+++.+
T Consensus 199 ~~l~~L~~LdLs~N~-l~~lp~-----------~~~~-~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 199 HGASGPVILDISRTR-IHSLPS-----------YGLE-NLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TTEECCSEEECTTSC-CCCCCS-----------SSCT-TCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred ccCcccchhhcCCCC-cCccCh-----------hhhc-cchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 446788888887664 444432 2466 888888888888888865 45677888888864
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=5.2e-16 Score=164.66 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=173.4
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCcc--ccChhHh------hcCCCCcEEEecCCCCc-ccChhh--
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQ--WIPECFF------AHMHGLKILNLSFTAIE-VLPNSV-- 534 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~------~~l~~L~~L~L~~~~i~-~lp~~i-- 534 (837)
.+++.+.+.+|.+ .+|.... ..|+.|++++| .+. .+|..+. .++++|++|+|++|.+. .+|..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~---~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT---DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH---HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-ccHHHHH---HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4577777888888 6665432 23888888887 342 3554431 26899999999999987 678776
Q ss_pred hcccccceecccCccccCCCc-ccccc-----CCCCEEeccCCcCcccc-ccccCCCCCCEEeccCCCCCC---CCCC-c
Q 038611 535 SDLMNLISLLLQRCRRLKRVP-SVAKL-----LALQHLDLRGTSIEEVP-EGMQMLENLSHLYLYSPPLKE---LPAG-L 603 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp-~~~~l-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~---~p~~-~ 603 (837)
..+++|++|++++|. ++.+| .++.+ ++|++|++++|.+..+| ..++++++|++|++++|.+.. +|.. .
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 899999999999965 55557 67777 89999999999998877 678999999999999998643 2322 1
Q ss_pred ccCCccCcEEEccccchhh---hhhHHHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCcccc
Q 038611 604 LPRLRKLCRLSLYFGWEAL---EETVEETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIAD 680 (837)
Q Consensus 604 l~~l~~L~~L~l~~~~~~~---~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 680 (837)
++++++|++|++ ..+... ......+..+ ++|+.|+++.|.+.....
T Consensus 197 ~~~l~~L~~L~L-~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~----------------------------- 245 (312)
T 1wwl_A 197 PLKFPTLQVLAL-RNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAG----------------------------- 245 (312)
T ss_dssp TTSCTTCCEEEC-TTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCC-----------------------------
T ss_pred hccCCCCCEEEC-CCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccc-----------------------------
Confidence 388999999999 444443 2222445677 899999998886543110
Q ss_pred ceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhh
Q 038611 681 LEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRL 760 (837)
Q Consensus 681 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 760 (837)
...+..+++|+.|+++++. +..+|..+ ++ +|++|+++++ .++.+|.
T Consensus 246 -----------------~~~~~~l~~L~~L~Ls~N~-l~~ip~~~-----------~~-~L~~L~Ls~N-~l~~~p~--- 291 (312)
T 1wwl_A 246 -----------------APSCDWPSQLNSLNLSFTG-LKQVPKGL-----------PA-KLSVLDLSYN-RLDRNPS--- 291 (312)
T ss_dssp -----------------CSCCCCCTTCCEEECTTSC-CSSCCSSC-----------CS-EEEEEECCSS-CCCSCCC---
T ss_pred -----------------hhhhhhcCCCCEEECCCCc-cChhhhhc-----------cC-CceEEECCCC-CCCCChh---
Confidence 0001225789999998775 33444332 24 9999999996 6777743
Q ss_pred hhhcCCccEEEecccc
Q 038611 761 LPALKNLECLEVCGCD 776 (837)
Q Consensus 761 ~~~L~~L~~L~l~~c~ 776 (837)
+..+++|++|++++++
T Consensus 292 ~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTTSCEEEEEECTTCT
T ss_pred HhhCCCCCEEeccCCC
Confidence 6678899999999873
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=2.7e-15 Score=161.16 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=61.1
Q ss_pred CcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc--cChhhhcccccceecccCccccCCCc-cccccCCCCEE
Q 038611 490 EILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV--LPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHL 566 (837)
Q Consensus 490 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 566 (837)
++++.|.+++| .+...+..+ ..+++|++|++++|.+.. +|..+..+++|++|++++|......| .++++++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 45555555555 333333332 345555666665555432 44455555555555555553222333 45555555555
Q ss_pred eccCC-cCcc--ccccccCCCCCCEEeccCC-CCCC--CCCCcccCCc-cCcEEEc
Q 038611 567 DLRGT-SIEE--VPEGMQMLENLSHLYLYSP-PLKE--LPAGLLPRLR-KLCRLSL 615 (837)
Q Consensus 567 ~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~-~l~~--~p~~~l~~l~-~L~~L~l 615 (837)
++++| .+.. +|..+.++++|++|++++| .+.. ++.. +..++ +|++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l 202 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEEC
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEe
Confidence 55555 4442 4444555555555555555 4442 2222 34455 5555555
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.6e-14 Score=151.20 Aligned_cols=170 Identities=22% Similarity=0.254 Sum_probs=146.1
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
..+++.+++.+|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..+|. +..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 4679999999999988854 578999999999999 6777776 6899999999999999998774 89999999999
Q ss_pred ccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 545 LQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 545 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
+++| .++.++.+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+++ +..+++|+.|++ ..+.....
T Consensus 119 L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L-~~N~i~~l 193 (291)
T 1h6t_A 119 LEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL-SKNHISDL 193 (291)
T ss_dssp CTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC-CSSCCCBC
T ss_pred CCCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC-CCCcCCCC
Confidence 9996 577778899999999999999999888 578999999999999999998876 799999999999 44444332
Q ss_pred hHHHHhhhhhccCeeEEeeccccc
Q 038611 625 TVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
..+..+ ++|+.|+++.|.+..
T Consensus 194 --~~l~~l-~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 --RALAGL-KNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGTTC-TTCSEEEEEEEEEEC
T ss_pred --hhhccC-CCCCEEECcCCcccC
Confidence 347788 999999999887654
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.1e-14 Score=157.02 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=154.7
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcE-EEecCCCCcc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKI-LNLSFTAIEV 529 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~L~~~~i~~ 529 (837)
.+..+..+|.. ...+++++.+++|.++.+|...|.++++|++|++++|.....+|...|.+++.|.. +.+.+|.+..
T Consensus 17 ~~~~Lt~iP~~--l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 17 QESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp ESTTCCSCCTT--CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred cCCCCCccCcC--cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 44567778864 34689999999999999999889999999999999995567788888899988775 6677788998
Q ss_pred cC-hhhhcccccceecccCccccCCCc--cccccCCCCEEeccCC-cCcccccc-ccCC-CCCCEEeccCCCCCCCCCCc
Q 038611 530 LP-NSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGT-SIEEVPEG-MQML-ENLSHLYLYSPPLKELPAGL 603 (837)
Q Consensus 530 lp-~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~-~i~~lp~~-~~~l-~~L~~L~l~~~~l~~~p~~~ 603 (837)
+| ..+..+++|++|++++| .++.+| .+....++.+|++.++ .+..+|.. +..+ ..++.|++++|.++.+|.+.
T Consensus 95 l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred cCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 85 66789999999999995 566666 4667778889999775 78888764 4555 46899999999999999884
Q ss_pred ccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 604 LPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 604 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
...++|+.|.+..++.........+..+ ++|+.|+++.|.+..+
T Consensus 174 -f~~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 174 -FNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIHSL 217 (350)
T ss_dssp -STTEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCCCCC
T ss_pred -ccccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCcCcc
Confidence 5667899999954454444444557888 9999999998876543
No 92
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=4.6e-14 Score=156.21 Aligned_cols=291 Identities=14% Similarity=0.118 Sum_probs=172.9
Q ss_pred ccccccchhHHHHHHHHHh-c----C--CCCCEEEE--EcCCCChHHHHHHHHHHHHHhhc--CCCC-eEEEEEeCCCcC
Q 038611 108 ETLVGEKTKKVVEIIWENL-M----G--DKAPKIGV--WGMGGIGKTTIMKEINNRLQKET--NKFN-VVIWVTVSQPLD 175 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~~--~~f~-~~~wv~vs~~~~ 175 (837)
..++|| +++++.|.+++ . + .....+.| +|++|+||||||+++++...... ..|. .++|+.+....+
T Consensus 22 ~~l~gR--~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVR--RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSS--CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCh--HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 579999 56677777766 3 2 34567777 99999999999999998763211 1222 367888777778
Q ss_pred HHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHh-cCCeEEEEEeCCCCCc--------cccccccC---CCCCC--CC
Q 038611 176 LIKLQTEIATALKESLPE-NEDKVSRAGRLLGMLK-AKAKFVLILDDMWEAF--------PLEKVGIP---EPNKE--NG 240 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--------~~~~l~~~---~~~~~--~~ 240 (837)
...++..++.+++...+. ..........+...+. .+++++|||||+|... .+..+... .+..+ ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999999765432 1222333344444432 3679999999997532 12211111 11112 34
Q ss_pred cEEEEEeCChhHhh-----------hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhC------C
Q 038611 241 CKLVITTRSYRVCR-----------SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECG------C 303 (837)
Q Consensus 241 s~iivTtR~~~v~~-----------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------G 303 (837)
..||+||+...+.. .... .+.+.+++.++++++|...+.....+ ...-.+....|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCC
Confidence 45887887654321 1221 28999999999999997654311000 0113567889999999 9
Q ss_pred chhHHHHHHHhcc------CC--cCHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCC--C
Q 038611 304 LPLAIVTVAASMS------GE--EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYP--K 373 (837)
Q Consensus 304 lPLai~~~~~~l~------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp--~ 373 (837)
.|..+..++.... .. -+...+..++.... . ...+.-++..|| ++.+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~--~~~~~~~l~~l~-~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----------A--ASIQTHELEALS-IHELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC-HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----------c--cchHHHHHHcCC-HHHHHHHHHHHHHHhcC
Confidence 9976655543211 11 12233333322110 0 223445677898 78899888888653 2
Q ss_pred CcccCHHHHHHHHH--H-h--CCCccchhHHHHHHhHHHHHHHHHhhcccccc
Q 038611 374 NFLILKDELIDYWI--A-E--GVIEELKDVQAKYDRGHTILNRLVNCCLLESA 421 (837)
Q Consensus 374 ~~~i~~~~li~~w~--a-e--g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 421 (837)
+..+....+...|. + . |. .. ........+++.|.+.+++...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNV-KP-----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCC-CC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCC-CC-----CCHHHHHHHHHHHHhCCCEEee
Confidence 33455555554442 2 1 21 00 0123456789999999999775
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=4.4e-15 Score=151.00 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=151.1
Q ss_pred cccCCCc-hhhhcccccEEEccccC-CCCCCCCCCCCCCcccEEEccC-CcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 454 HLLEFPG-EQEWKANLERVSLMMND-IDEIPSNMSPHCEILSTLLLQR-NINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 454 ~~~~~p~-~~~~~~~~~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+|. ......+++.+++.+|. +..+++..+..+++|++|++++ | .+..++...|.++++|++|++++|.+..+
T Consensus 42 ~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~l 120 (239)
T 2xwt_C 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMF 120 (239)
T ss_dssp CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSC
T ss_pred cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccc
Confidence 3444444 23345789999999997 9999888889999999999998 6 78889988889999999999999999999
Q ss_pred Chhhhcccccc---eecccCccccCCCc--cccccCCCC-EEeccCCcCccccccccCCCCCCEEeccCCC-CCCCCCCc
Q 038611 531 PNSVSDLMNLI---SLLLQRCRRLKRVP--SVAKLLALQ-HLDLRGTSIEEVPEGMQMLENLSHLYLYSPP-LKELPAGL 603 (837)
Q Consensus 531 p~~i~~l~~L~---~L~L~~~~~l~~lp--~~~~l~~L~-~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~-l~~~p~~~ 603 (837)
|. +..+++|+ +|++++|..++.+| .+.++++|+ +|++++|.+..+|......++|++|++++|. ++.+|...
T Consensus 121 p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 121 PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence 97 88888888 99999975788777 489999999 9999999999999876555899999999995 99998887
Q ss_pred ccCC-ccCcEEEccccchhhhhhHHHHhhhhhccCeeEEee
Q 038611 604 LPRL-RKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHF 643 (837)
Q Consensus 604 l~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 643 (837)
+..+ ++|+.|++ ..+........ .+ .+|+.|.+..
T Consensus 200 ~~~l~~~L~~L~l-~~N~l~~l~~~---~~-~~L~~L~l~~ 235 (239)
T 2xwt_C 200 FGGVYSGPSLLDV-SQTSVTALPSK---GL-EHLKELIARN 235 (239)
T ss_dssp TTTCSBCCSEEEC-TTCCCCCCCCT---TC-TTCSEEECTT
T ss_pred hhccccCCcEEEC-CCCccccCChh---Hh-ccCceeeccC
Confidence 8999 99999999 44433322212 45 7788887754
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=5.2e-14 Score=141.74 Aligned_cols=145 Identities=26% Similarity=0.365 Sum_probs=128.2
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh-hhcccccceeccc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS-VSDLMNLISLLLQ 546 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 546 (837)
.+.++..++.+..+|.... ++|++|++++| .+..+++..|..+++|++|+|++|.+..+|.. +..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4568888888999987543 88999999999 67778777789999999999999999998854 5899999999999
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
+| .++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+|...+..+++|+.|++..
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CC-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 96 566776 37899999999999999999999999999999999999999999987789999999999943
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=1.4e-14 Score=155.47 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=161.6
Q ss_pred cccEEEccCCcCccccChhHhhcC--CCCcEEEecCCCCcccChhhhcccccceecccCccccCC-Cc-cccccCCCCEE
Q 038611 491 ILSTLLLQRNINLQWIPECFFAHM--HGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKR-VP-SVAKLLALQHL 566 (837)
Q Consensus 491 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp-~~~~l~~L~~L 566 (837)
.++.++++++ .+. +..+..+ +.+++|++++|.+...+..+..+++|++|++++|..... +| .+..+++|++|
T Consensus 48 ~~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678999887 332 4455777 899999999999887777788899999999999763323 66 68899999999
Q ss_pred eccCCcCc-cccccccCCCCCCEEeccCC-CCCC--CCCCcccCCccCcEEEccccchhhhh-hHHHHhhhhh-ccCeeE
Q 038611 567 DLRGTSIE-EVPEGMQMLENLSHLYLYSP-PLKE--LPAGLLPRLRKLCRLSLYFGWEALEE-TVEETGRLSD-RLDTFE 640 (837)
Q Consensus 567 ~l~~~~i~-~lp~~~~~l~~L~~L~l~~~-~l~~--~p~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~-~L~~L~ 640 (837)
++++|.+. ..|..+..+++|++|++++| .+.. ++.. +.++++|++|++..+...... ....+..+ + +|+.|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~ 201 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SETITQLN 201 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CTTCCEEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHHHHHHHHhc-ccCCCEEE
Confidence 99999876 46778888999999999999 5663 4433 678899999999444255544 34567778 8 999999
Q ss_pred Eeecc--ccc--hhhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeec
Q 038611 641 GHFSK--LNN--FNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVY 716 (837)
Q Consensus 641 l~~~~--~~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 716 (837)
++.|. +.+ ++.. +..+++|+.|++++|.
T Consensus 202 l~~~~~~~~~~~l~~~------------------------------------------------~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTL------------------------------------------------VRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CCSCGGGSCHHHHHHH------------------------------------------------HHHCTTCSEEECTTCT
T ss_pred eCCCcccCCHHHHHHH------------------------------------------------HhhCCCCCEEeCCCCC
Confidence 98873 211 1110 1125889999999887
Q ss_pred chh-hhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhcCCccEEEeccc
Q 038611 717 DIA-SLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPALKNLECLEVCGC 775 (837)
Q Consensus 717 ~~~-~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 775 (837)
.+. ..+.. ...++ +|++|++++|..+... ....+..+++|+.|++++|
T Consensus 234 ~l~~~~~~~---------l~~l~-~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 234 MLKNDCFQE---------FFQLN-YLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGG---------GGGCT-TCCEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTS
T ss_pred cCCHHHHHH---------HhCCC-CCCEeeCCCCCCCCHH-HHHHHhcCCCCCEEeccCc
Confidence 432 22222 23566 9999999999755442 2234678999999999999
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=6.8e-14 Score=139.89 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=126.2
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-ChhhhcccccceecccC
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQR 547 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 547 (837)
+.+...++.+..+|.... ++|+.|++++| .+..++...|..+++|++|+|++|.+..+ |..+..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 567888888999987543 78999999999 78888887789999999999999999877 67899999999999999
Q ss_pred ccccCCCc-c-ccccCCCCEEeccCCcCcccc-ccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 548 CRRLKRVP-S-VAKLLALQHLDLRGTSIEEVP-EGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 548 ~~~l~~lp-~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
| .++.+| . +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++.+.+..+++|+.|++..
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 5 577777 3 789999999999999998875 5688999999999999999999887789999999999944
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.52 E-value=1e-13 Score=143.83 Aligned_cols=151 Identities=31% Similarity=0.456 Sum_probs=133.6
Q ss_pred hhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh-hhcccccc
Q 038611 463 EWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS-VSDLMNLI 541 (837)
Q Consensus 463 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 541 (837)
....+++.+++.+|.+..++ .+..+++|++|++++| .+..++...|..+++|++|++++|.+..+|.. ++.+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 44578999999999998875 4578999999999999 78888888889999999999999999988754 68999999
Q ss_pred eecccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 542 SLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 542 ~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
+|++++| .++.+| .++++++|++|++++|.+..+|.. ++.+++|++|++++|.+..+++..++.+++|+.|++..
T Consensus 137 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 137 YLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 9999997 566666 378999999999999999988875 58899999999999999999888789999999999943
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=5.4e-15 Score=162.03 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=129.2
Q ss_pred CCCCcccEEEccCCcCccccCh----hHhhcCCCCcEEEecCCCCcc----cChhh-------hcccccceecccCcccc
Q 038611 487 PHCEILSTLLLQRNINLQWIPE----CFFAHMHGLKILNLSFTAIEV----LPNSV-------SDLMNLISLLLQRCRRL 551 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~i~~----lp~~i-------~~l~~L~~L~L~~~~~l 551 (837)
..+++|++|++++| .+..... ..+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|..-
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45677788888777 3333211 113567778888887765442 34333 56677777777775433
Q ss_pred C----CCc-cccccCCCCEEeccCCcCcc-----ccccccCC---------CCCCEEeccCCCCC--CCCC--CcccCCc
Q 038611 552 K----RVP-SVAKLLALQHLDLRGTSIEE-----VPEGMQML---------ENLSHLYLYSPPLK--ELPA--GLLPRLR 608 (837)
Q Consensus 552 ~----~lp-~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~~l~--~~p~--~~l~~l~ 608 (837)
. .+| .+.++++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .+|. ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 3 255 56777777777777776642 33333444 67777777777764 2221 1245666
Q ss_pred cCcEEEccccchhhhhh----HH-HHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEeccCcCCCCcccccee
Q 038611 609 KLCRLSLYFGWEALEET----VE-ETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEV 683 (837)
Q Consensus 609 ~L~~L~l~~~~~~~~~~----~~-~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l 683 (837)
+|++|++ ..+...... .. .+..+ ++|+.|+++.|.+..... .
T Consensus 188 ~L~~L~L-~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~--~----------------------------- 234 (386)
T 2ca6_A 188 LLHTVKM-VQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGS--S----------------------------- 234 (386)
T ss_dssp TCCEEEC-CSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHH--H-----------------------------
T ss_pred CcCEEEC-cCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHH--H-----------------------------
Confidence 7777777 333333222 12 44455 667777776665432000 0
Q ss_pred eeccchhhhhccCCCCcccCCCCCcEEEEeeecchhh----hhhcccccccccccccccccccEEEEecCCCCCc-----
Q 038611 684 DRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIAS----LNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKN----- 754 (837)
Q Consensus 684 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~----- 754 (837)
.+. ..+..+++|+.|++++|.-... ++..+. .+.++ +|+.|+|++| .+..
T Consensus 235 ---------~l~---~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-------~~~~~-~L~~L~L~~n-~i~~~g~~~ 293 (386)
T 2ca6_A 235 ---------ALA---IALKSWPNLRELGLNDCLLSARGAAAVVDAFS-------KLENI-GLQTLRLQYN-EIELDAVRT 293 (386)
T ss_dssp ---------HHH---HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-------TCSSC-CCCEEECCSS-CCBHHHHHH
T ss_pred ---------HHH---HHHccCCCcCEEECCCCCCchhhHHHHHHHHh-------hccCC-CeEEEECcCC-cCCHHHHHH
Confidence 000 0012246788888877752211 222221 12255 7888888886 3444
Q ss_pred chhhhhhhhcCCccEEEecccc
Q 038611 755 LFSLRLLPALKNLECLEVCGCD 776 (837)
Q Consensus 755 l~~~~~~~~L~~L~~L~l~~c~ 776 (837)
++. ....++++|+.|++++|+
T Consensus 294 l~~-~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 294 LKT-VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHH-HHHHHCTTCCEEECTTSB
T ss_pred HHH-HHHhcCCCceEEEccCCc
Confidence 322 222557788888888774
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=1.4e-14 Score=168.61 Aligned_cols=173 Identities=17% Similarity=0.136 Sum_probs=101.4
Q ss_pred cccccEEEccccCCCCCCC----CCCCCCCcccEEEccCCcCccccCh----hHhhcCCCCcEEEecCC-CCcccChhhh
Q 038611 465 KANLERVSLMMNDIDEIPS----NMSPHCEILSTLLLQRNINLQWIPE----CFFAHMHGLKILNLSFT-AIEVLPNSVS 535 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~-~i~~lp~~i~ 535 (837)
.++++.+++.+|.+..... .....+++|++|+++++. ..++. .++.++++|++|++++| .+..+|..+.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 3567888887776543221 223466788888888773 22222 22355688888888877 3556677777
Q ss_pred cccccceecccCccc------cCCCc-cccccCCCCEE-eccCCcCccccccccCCCCCCEEeccCCCCCCC-CCCcccC
Q 038611 536 DLMNLISLLLQRCRR------LKRVP-SVAKLLALQHL-DLRGTSIEEVPEGMQMLENLSHLYLYSPPLKEL-PAGLLPR 606 (837)
Q Consensus 536 ~l~~L~~L~L~~~~~------l~~lp-~~~~l~~L~~L-~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~-p~~~l~~ 606 (837)
.+++|+.|++..|.. +..++ .+.++++|+.| .+.......+|..+..+++|++|++++|.+... ...++++
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~ 312 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence 788888887665432 22233 45666666666 344333344555555677777777777764421 1122456
Q ss_pred CccCcEEEccccchhhhhhHHHHh-hhhhccCeeEEe
Q 038611 607 LRKLCRLSLYFGWEALEETVEETG-RLSDRLDTFEGH 642 (837)
Q Consensus 607 l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~L~~L~l~ 642 (837)
+++|++|++..+ .....+..+. .+ ++|+.|++.
T Consensus 313 ~~~L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~ 346 (594)
T 2p1m_B 313 CPKLQRLWVLDY--IEDAGLEVLASTC-KDLRELRVF 346 (594)
T ss_dssp CTTCCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEE
T ss_pred CCCcCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEe
Confidence 777777777332 3333343333 35 777777773
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=8.2e-14 Score=136.81 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=118.3
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc-cChhhhccccccee
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV-LPNSVSDLMNLISL 543 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L 543 (837)
..+++.+++.+|.+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 457889999999888877 3578889999999988 566554 35889999999999998875 67788899999999
Q ss_pred cccCccccCCCc-cccccCCCCEEeccCCc-CccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEcc
Q 038611 544 LLQRCRRLKRVP-SVAKLLALQHLDLRGTS-IEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616 (837)
Q Consensus 544 ~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 616 (837)
++++|......| .++++++|++|++++|. +..+| .+..+++|++|++++|.+..++ . +..+++|+.|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~-l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-G-IEDFPKLNQLYAF 189 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-T-GGGCSSCCEEEEC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-H-hccCCCCCEEEee
Confidence 999875544456 68889999999999996 88887 6888899999999999888877 3 7888889999883
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=137.21 Aligned_cols=146 Identities=22% Similarity=0.312 Sum_probs=124.2
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCcccc-ChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceecc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWI-PECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLL 545 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L 545 (837)
.+.+++++|.+..+|... .+.++.|++++| .+..+ +..+|..+++|++|+|++|.+..++. .+..+++|++|+|
T Consensus 13 ~~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI---PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCC---CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 357889999999998754 356789999999 67776 45667999999999999999998875 7899999999999
Q ss_pred cCccccCCCc--cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEcccc
Q 038611 546 QRCRRLKRVP--SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFG 618 (837)
Q Consensus 546 ~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~ 618 (837)
++|. ++.+| .+.++++|++|++++|.+..+ |..+..+++|++|++++|.++.+++..+..+++|+.|++..+
T Consensus 89 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 89 TSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9965 55555 489999999999999999887 567899999999999999999986666899999999999443
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=9.2e-15 Score=160.19 Aligned_cols=264 Identities=15% Similarity=0.029 Sum_probs=178.9
Q ss_pred CCchhhhcccccEEEccccCCCCCCC----CCCCCCCcccEEEccCCcCcc----ccChhH------hhcCCCCcEEEec
Q 038611 458 FPGEQEWKANLERVSLMMNDIDEIPS----NMSPHCEILSTLLLQRNINLQ----WIPECF------FAHMHGLKILNLS 523 (837)
Q Consensus 458 ~p~~~~~~~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~L~ 523 (837)
++........++.+++.+|.+..... ..+..+++|++|++++| .+. .+|..+ +..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 33333444679999999998775321 23567899999999987 222 334443 4789999999999
Q ss_pred CCCCcc-----cChhhhcccccceecccCccccC----CCc-ccccc---------CCCCEEeccCCcCc--ccc---cc
Q 038611 524 FTAIEV-----LPNSVSDLMNLISLLLQRCRRLK----RVP-SVAKL---------LALQHLDLRGTSIE--EVP---EG 579 (837)
Q Consensus 524 ~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~----~lp-~~~~l---------~~L~~L~l~~~~i~--~lp---~~ 579 (837)
+|.+.. +|..+..+++|++|+|++|..-. .++ .+..+ ++|++|++++|.+. .+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999876 78889999999999999976422 222 24444 89999999999885 455 46
Q ss_pred ccCCCCCCEEeccCCCCC------CCCCCcccCCccCcEEEccccchhh----hhhHHHHhhhhhccCeeEEeeccccch
Q 038611 580 MQMLENLSHLYLYSPPLK------ELPAGLLPRLRKLCRLSLYFGWEAL----EETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 580 ~~~l~~L~~L~l~~~~l~------~~p~~~l~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
+..+++|++|++++|.+. -+|.. +..+++|+.|++ ..+... ...+..+..+ ++|+.|+++.|.+...
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~L-s~n~l~~~g~~~l~~~l~~~-~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDL-QDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEEC-CSSCCHHHHHHHHHHHGGGC-TTCCEEECTTCCCCHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEEC-cCCCCCcHHHHHHHHHHccC-CCcCEEECCCCCCchh
Confidence 778999999999999887 23324 789999999999 445454 3344567788 8999999998876542
Q ss_pred hhhhhcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchh----hhhhcc
Q 038611 650 NIYVKSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIA----SLNDVL 725 (837)
Q Consensus 650 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~l~~~~ 725 (837)
....-.. . +. ...+++|+.|++++|.-.. .++..+
T Consensus 260 ~~~~l~~-------------------------~--l~--------------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 260 GAAAVVD-------------------------A--FS--------------KLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHHHHHH-------------------------H--HH--------------TCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred hHHHHHH-------------------------H--Hh--------------hccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 1100000 0 00 0115789999998876333 244432
Q ss_pred cccccccccccccccccEEEEecCCCCCcchh--hhhhhhcCCccEEEecccc
Q 038611 726 PREQGLVNIGKFSHDLKVLRFYYCNNLKNLFS--LRLLPALKNLECLEVCGCD 776 (837)
Q Consensus 726 ~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~~L~l~~c~ 776 (837)
...++ +|++|++++|+ +....+ ......++.++.+++..-.
T Consensus 299 --------~~~l~-~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 299 --------DEKMP-DLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp --------HHHCT-TCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred --------HhcCC-CceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 12456 99999999985 444332 2223345566555565443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=5.7e-14 Score=161.38 Aligned_cols=170 Identities=23% Similarity=0.255 Sum_probs=135.8
Q ss_pred cccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceec
Q 038611 465 KANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLL 544 (837)
Q Consensus 465 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 544 (837)
...++.|++.+|.+..++. +..+++|+.|++++| .+..+++ +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 3568888888888888763 577889999999888 6677766 688899999999999888877 688889999999
Q ss_pred ccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 545 LQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 545 L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
|++| .+..+|.+..+++|+.|+|++|.+..+ ..+..+++|++|+|++|.+..+++ +..+++|+.|++ ..+.....
T Consensus 116 Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L-s~N~i~~l 190 (605)
T 1m9s_A 116 LEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL-SKNHISDL 190 (605)
T ss_dssp CTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC-CSSCCCBC
T ss_pred ecCC-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC-cCCCCCCC
Confidence 9885 466677888889999999999988877 568888999999999988887765 788889999998 44443332
Q ss_pred hHHHHhhhhhccCeeEEeeccccc
Q 038611 625 TVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
..+..+ ++|+.|+++.|.+..
T Consensus 191 --~~l~~l-~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 --RALAGL-KNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGTTC-TTCSEEECCSEEEEC
T ss_pred --hHHccC-CCCCEEEccCCcCcC
Confidence 357778 888999888876654
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=5.8e-14 Score=163.33 Aligned_cols=340 Identities=14% Similarity=0.091 Sum_probs=182.6
Q ss_pred cccEEEccccC-CC--CCCCCCCCCCCcccEEEccCCcCcccc----ChhHhhcCCCCcEEEecCCCCc-----ccChhh
Q 038611 467 NLERVSLMMND-ID--EIPSNMSPHCEILSTLLLQRNINLQWI----PECFFAHMHGLKILNLSFTAIE-----VLPNSV 534 (837)
Q Consensus 467 ~~~~l~l~~~~-~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~-----~lp~~i 534 (837)
+++++++.++. +. .++ .....|++|++|++++|. +... ...++..+++|++|++++|.+. .++..+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHH-HHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHH-HHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 37777776654 11 010 112357788888888773 3222 1224467788888888888765 345555
Q ss_pred hcccccceecccCccccCCCc-cccccCCCCEEeccCCcC----ccccccccCCCCCCEEeccCCCCCCCCCCcccCCcc
Q 038611 535 SDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSI----EEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRK 609 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i----~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~ 609 (837)
.++++|++|++++|. +..+| .+.++++|++|+++++.. ...+..+..+++|++|.++++....+|.. +..+++
T Consensus 217 ~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~ 294 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQ 294 (592)
T ss_dssp HHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGG
T ss_pred hhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCC
Confidence 677888888888854 44566 677888888888875421 23445667778888888877655556554 678889
Q ss_pred CcEEEccccchhhhhhH-HHHhhhhhccCeeEEeeccccchhhhhhcccCCccceEEEEe-----------ccCcC----
Q 038611 610 LCRLSLYFGWEALEETV-EETGRLSDRLDTFEGHFSKLNNFNIYVKSSDGRESEKYCLML-----------SPDYV---- 673 (837)
Q Consensus 610 L~~L~l~~~~~~~~~~~-~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~~~~~~-----------~~~~~---- 673 (837)
|++|++..+. .....+ ..+..+ ++|+.|++. +.+.+.....-...+.+|+.+.+.- .....
T Consensus 295 L~~L~Ls~~~-l~~~~~~~~~~~~-~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 295 IRKLDLLYAL-LETEDHCTLIQKC-PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp CCEEEETTCC-CCHHHHHHHHTTC-TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CcEEecCCCc-CCHHHHHHHHHhC-cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 9999994433 444444 446677 889999888 3332211111112345577776662 11100
Q ss_pred --CCCccccceeeeccchhhhhccCCCCc-ccCCCCCcEEEEeee---cchhhhhhcccccccccccccccccccEEEEe
Q 038611 674 --GDSVIADLEVDRSVCLIANKICEKEKP-IVLPEDVQCLEMFEV---YDIASLNDVLPREQGLVNIGKFSHDLKVLRFY 747 (837)
Q Consensus 674 --~~~~~~~~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~---~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~ 747 (837)
......++.+.+... .+... .... ...+++|+.|++.++ ..++..|.. ..+..+ ...++ +|+.|+++
T Consensus 372 ~l~~~~~~L~~L~l~~~-~l~~~--~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~--~~~~~-~L~~L~L~ 444 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVS-DITNE--SLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSL--LIGCK-KLRRFAFY 444 (592)
T ss_dssp HHHHHCTTCSEEEEEES-CCCHH--HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHHHH--HHHCT-TCCEEEEE
T ss_pred HHHhhCccCeEEEeecC-CccHH--HHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHHHH--HHhCC-CCCEEEEe
Confidence 000122333333111 00000 0000 112456666666543 222221100 000000 12355 78888887
Q ss_pred cCCC-CCcchhhhhhhhcCCccEEEeccccchhhhhccccchhhhhcccccccccccCCCcceEecccccccccccCCCC
Q 038611 748 YCNN-LKNLFSLRLLPALKNLECLEVCGCDSIEEIVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFCSDNG 826 (837)
Q Consensus 748 ~c~~-l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~~~~~ 826 (837)
+|.+ +.+.........+++|+.|++++|. +..... ......+|+|++|+|++|+ +..-.....
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--------------~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL--------------MEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH--------------HHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH--------------HHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 7654 3333222223447788888888774 322100 0023467999999999998 443211112
Q ss_pred cccCCCCccC
Q 038611 827 VLVCDPLQEI 836 (837)
Q Consensus 827 ~~~~~sL~~l 836 (837)
...+|+|+.|
T Consensus 509 ~~~l~~L~~L 518 (592)
T 3ogk_B 509 VTKLPSLRYL 518 (592)
T ss_dssp HHHCSSCCEE
T ss_pred HHhcCccCee
Confidence 3356777765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=149.60 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=100.7
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhh-cCCCCcEEEecCCCCcccC-hhhhcccccceeccc
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFA-HMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQ 546 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 546 (837)
+.+++.++.+..+|.... +.++.|++++| .+..++...|. ++++|++|+|++|.+..+| ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 455666666666665432 34666666666 56666655555 6666666666666666655 346666666666666
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCCCCCCCcc---cCCccCcEEEccccch
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLKELPAGLL---PRLRKLCRLSLYFGWE 620 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~~p~~~l---~~l~~L~~L~l~~~~~ 620 (837)
+|. ++.+| .+.++++|++|+|++|.+..+ |..+..+++|++|++++|.+..+|...+ ..+++|+.|++ ..+.
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L-~~N~ 174 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL-SSNK 174 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC-CSSC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC-CCCC
Confidence 643 44444 366666666666666666655 3455666666666666666666665544 45666666666 3344
Q ss_pred hhhhhHHHHhhhhhc--cCeeEEeeccc
Q 038611 621 ALEETVEETGRLSDR--LDTFEGHFSKL 646 (837)
Q Consensus 621 ~~~~~~~~l~~l~~~--L~~L~l~~~~~ 646 (837)
........+..+ .. |+.|+++.|.+
T Consensus 175 l~~l~~~~~~~l-~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 175 LKKLPLTDLQKL-PAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCCHHHHHHS-CHHHHTTEECCSSCE
T ss_pred CCccCHHHhhhc-cHhhcceEEecCCCc
Confidence 444344455555 44 35666665544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=8.9e-14 Score=150.59 Aligned_cols=163 Identities=28% Similarity=0.342 Sum_probs=138.7
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCC-CCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSP-HCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV 529 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 529 (837)
.+..+..+|.. ....++.+++++|.+..++...+. .+++|++|++++| .+..++...|.++++|++|+|++|.+..
T Consensus 26 ~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 26 SKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCc
Confidence 34556677763 345789999999999999888777 9999999999999 7888988878999999999999999998
Q ss_pred cCh-hhhcccccceecccCccccCCC-c-cccccCCCCEEeccCCcCccccccc----cCCCCCCEEeccCCCCCCCCCC
Q 038611 530 LPN-SVSDLMNLISLLLQRCRRLKRV-P-SVAKLLALQHLDLRGTSIEEVPEGM----QMLENLSHLYLYSPPLKELPAG 602 (837)
Q Consensus 530 lp~-~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l~~~~l~~~p~~ 602 (837)
+|. .+..+.+|++|+|++|. +..+ | .+.++++|++|+|++|.+..+|..+ ..+++|++|++++|.+..+|..
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred CCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 875 57899999999999965 5544 5 6999999999999999999999876 6799999999999999999876
Q ss_pred cccCCcc--CcEEEccc
Q 038611 603 LLPRLRK--LCRLSLYF 617 (837)
Q Consensus 603 ~l~~l~~--L~~L~l~~ 617 (837)
.+..++. |+.|++..
T Consensus 182 ~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHHHSCHHHHTTEECCS
T ss_pred HhhhccHhhcceEEecC
Confidence 6777776 48899844
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=1.2e-13 Score=149.63 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=103.1
Q ss_pred EccccCCCCCCCCCCCCCCcccEEEccCCcCccccCh----hHhhcCC-CCcEEEecCCCCccc-Chhhhcc-----ccc
Q 038611 472 SLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPE----CFFAHMH-GLKILNLSFTAIEVL-PNSVSDL-----MNL 540 (837)
Q Consensus 472 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~i~~l-p~~i~~l-----~~L 540 (837)
.+..|.+....+.+....++|+.|++++| .+...+. ..|..++ +|++|+|++|.+... +..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45566666554444445566888888887 5666665 5556777 788888888877654 4455554 778
Q ss_pred ceecccCccccCCCc-c----cccc-CCCCEEeccCCcCcccccc-----ccC-CCCCCEEeccCCCCCCCCCC----cc
Q 038611 541 ISLLLQRCRRLKRVP-S----VAKL-LALQHLDLRGTSIEEVPEG-----MQM-LENLSHLYLYSPPLKELPAG----LL 604 (837)
Q Consensus 541 ~~L~L~~~~~l~~lp-~----~~~l-~~L~~L~l~~~~i~~lp~~-----~~~-l~~L~~L~l~~~~l~~~p~~----~l 604 (837)
++|+|++|..-...+ . +..+ ++|++|++++|.+...+.. +.. .++|++|++++|.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888765332333 2 3333 6788888888877655432 233 25788888887776632211 12
Q ss_pred cCCc-cCcEEEccccchhhhhhHHH----HhhhhhccCeeEEeecccc
Q 038611 605 PRLR-KLCRLSLYFGWEALEETVEE----TGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 605 ~~l~-~L~~L~l~~~~~~~~~~~~~----l~~l~~~L~~L~l~~~~~~ 647 (837)
..++ +|++|++ ..+......... +....++|+.|+++.|.+.
T Consensus 163 ~~~~~~L~~L~L-s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNL-RGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEEC-TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeee-cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 3444 7777777 444444333322 3333126777777666544
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=3.4e-14 Score=146.32 Aligned_cols=167 Identities=24% Similarity=0.253 Sum_probs=116.2
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceeccc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQ 546 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 546 (837)
++..+.+..+.+..++ .+..+++|+.|++++| .+..++ . +..+++|++|+|++|.+..+|. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4555556666666665 2456777888888777 566666 2 4777888888888888777776 7777888888888
Q ss_pred CccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhH
Q 038611 547 RCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETV 626 (837)
Q Consensus 547 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 626 (837)
+| .++.+|.+.. ++|++|++++|.+..+| .+..+++|++|++++|.++.++ . ++.+++|+.|++ ..+.....
T Consensus 94 ~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~-l~~l~~L~~L~L-~~N~i~~~-- 165 (263)
T 1xeu_A 94 RN-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-M-LGFLSKLEVLDL-HGNEITNT-- 165 (263)
T ss_dssp SS-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-G-GGGCTTCCEEEC-TTSCCCBC--
T ss_pred CC-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-H-HccCCCCCEEEC-CCCcCcch--
Confidence 74 4666664444 77888888888777765 4777788888888888777775 2 677788888888 33333332
Q ss_pred HHHhhhhhccCeeEEeeccccc
Q 038611 627 EETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 627 ~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
..+..+ ++|+.|+++.|.+..
T Consensus 166 ~~l~~l-~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRL-KKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTC-CCCCEEEEEEEEEEC
T ss_pred HHhccC-CCCCEEeCCCCcccC
Confidence 456667 778888887776543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=4.5e-13 Score=134.87 Aligned_cols=143 Identities=25% Similarity=0.442 Sum_probs=125.5
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. ...+++.+++.+|.+..+++..+..+++|+.|++++| .+..+|...|..+++|++|+|++|.+..+
T Consensus 27 ~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 27 RSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 34455667753 3478999999999999998888899999999999999 78899988889999999999999999998
Q ss_pred Chh-hhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCC
Q 038611 531 PNS-VSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLK 597 (837)
Q Consensus 531 p~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~ 597 (837)
|.. +..+++|++|+|++| .++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 755 689999999999995 577898 899999999999999999998864 788999999999999764
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.2e-13 Score=137.07 Aligned_cols=144 Identities=28% Similarity=0.430 Sum_probs=110.1
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh-hhcccccceecccC
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS-VSDLMNLISLLLQR 547 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 547 (837)
+.+....+.+..+|... .++|+.|++++| .+..++...|..+++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666667777776543 357888888888 67777777778888888888888888877754 57788888888888
Q ss_pred ccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 548 CRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 548 ~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
| .++.+| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.+..+|...+..+++|+.|++..
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 86 N-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred C-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 5 455565 367888888888888888877765 57788888888888888888777678888888888833
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=6.8e-13 Score=131.52 Aligned_cols=152 Identities=27% Similarity=0.397 Sum_probs=121.8
Q ss_pred ccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccCh
Q 038611 453 EHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPN 532 (837)
Q Consensus 453 ~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~ 532 (837)
..+..+|.. ...+++.+++.+|.+..++...+..+++|++|++++| .+..++...|..+++|++|++++|.+..+|.
T Consensus 17 ~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 17 QGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp SCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 344555543 3457899999999999888887888999999999998 6778888878899999999999999988875
Q ss_pred h-hhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCc
Q 038611 533 S-VSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLR 608 (837)
Q Consensus 533 ~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~ 608 (837)
. +..+++|++|++++| .++.+| .+.++++|++|++++|.+..+|.. +..+++|++|++++|.+. +.++
T Consensus 94 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~ 165 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence 4 588999999999985 466666 378899999999999988888875 688999999999988543 3344
Q ss_pred cCcEEEc
Q 038611 609 KLCRLSL 615 (837)
Q Consensus 609 ~L~~L~l 615 (837)
+|+.|++
T Consensus 166 ~l~~L~~ 172 (208)
T 2o6s_A 166 GIRYLSE 172 (208)
T ss_dssp TTHHHHH
T ss_pred CHHHHHH
Confidence 5555554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=4.6e-13 Score=133.80 Aligned_cols=143 Identities=22% Similarity=0.311 Sum_probs=123.4
Q ss_pred ccccccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 451 AREHLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 451 ~~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
.+..+..+|.. ....++.+++.+|.+..+++..+..+++|+.|++++| .+..+++..|.++++|++|+|++|.+..+
T Consensus 19 ~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 19 RGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 34556677764 3368999999999999999888899999999999999 67888777789999999999999999999
Q ss_pred Chh-hhcccccceecccCccccCCC-c-cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCC
Q 038611 531 PNS-VSDLMNLISLLLQRCRRLKRV-P-SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLK 597 (837)
Q Consensus 531 p~~-i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~ 597 (837)
|.. +..+++|++|+|++|. ++.+ | .+..+++|++|++++|.+..+|.. +..+++|++|++++|.+.
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 865 5789999999999965 5555 4 699999999999999999998875 788999999999998753
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1.4e-13 Score=135.17 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=125.6
Q ss_pred CCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cccccCCCCE
Q 038611 487 PHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQH 565 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~ 565 (837)
..+++|+.|++++| .+..+| . +..+++|++|++++|.+..++ .+..+++|++|++++|..-...| .++++++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56789999999998 677888 3 589999999999999887765 78999999999999975444455 7999999999
Q ss_pred EeccCCcCcc-ccccccCCCCCCEEeccCCC-CCCCCCCcccCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEee
Q 038611 566 LDLRGTSIEE-VPEGMQMLENLSHLYLYSPP-LKELPAGLLPRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHF 643 (837)
Q Consensus 566 L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~-l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~ 643 (837)
|++++|.+.. .|..+..+++|++|++++|. +..+| . +..+++|+.|++ ..+..... ..+..+ ++|+.|++++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l-~~n~i~~~--~~l~~l-~~L~~L~l~~ 190 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNI-QFDGVHDY--RGIEDF-PKLNQLYAFS 190 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEEC-TTBCCCCC--TTGGGC-SSCCEEEECB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEEC-CCCCCcCh--HHhccC-CCCCEEEeeC
Confidence 9999998875 67789999999999999998 88887 3 899999999999 44444432 267788 9999999998
Q ss_pred cccc
Q 038611 644 SKLN 647 (837)
Q Consensus 644 ~~~~ 647 (837)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8653
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=5.5e-14 Score=152.41 Aligned_cols=182 Identities=14% Similarity=0.168 Sum_probs=121.5
Q ss_pred hcccccEEEccccCCCCCCC----CCCCCCC-cccEEEccCCcCccccChhHhhcC-----CCCcEEEecCCCCcccC-h
Q 038611 464 WKANLERVSLMMNDIDEIPS----NMSPHCE-ILSTLLLQRNINLQWIPECFFAHM-----HGLKILNLSFTAIEVLP-N 532 (837)
Q Consensus 464 ~~~~~~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~i~~lp-~ 532 (837)
...+++++++++|.+...+. ..+..++ +|++|++++| .+.......+..+ ++|++|+|++|.+...+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 33458888888888887765 4455677 8889999888 5665544444443 88899999988877544 3
Q ss_pred h----hhcc-cccceecccCccccCCCc--cc----cc-cCCCCEEeccCCcCc-----cccccccCCC-CCCEEeccCC
Q 038611 533 S----VSDL-MNLISLLLQRCRRLKRVP--SV----AK-LLALQHLDLRGTSIE-----EVPEGMQMLE-NLSHLYLYSP 594 (837)
Q Consensus 533 ~----i~~l-~~L~~L~L~~~~~l~~lp--~~----~~-l~~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~l~~~ 594 (837)
. +..+ ++|++|++++|. ++..+ .+ .. .++|++|++++|.+. .++..+..++ +|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3 3344 788999998865 44444 23 23 358899999888776 4555566665 8899999888
Q ss_pred CCCCCCCCc----ccCC-ccCcEEEccccchhhhhhH----HHHhhhhhccCeeEEeeccccc
Q 038611 595 PLKELPAGL----LPRL-RKLCRLSLYFGWEALEETV----EETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 595 ~l~~~p~~~----l~~l-~~L~~L~l~~~~~~~~~~~----~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
.+...+... +..+ ++|++|++ ..+....... ..+..+.++|+.|+++.|.+..
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDL-SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEEC-TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEEC-CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 877654321 3444 58888988 4444444332 3444431478888888776543
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=2.3e-14 Score=166.86 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=68.8
Q ss_pred CCCcccEEEccCCcCccc-cChhHhhcCCCCcEEEecCC-CCcc--cChhhhcccccceecccCccccCC-----Cc-cc
Q 038611 488 HCEILSTLLLQRNINLQW-IPECFFAHMHGLKILNLSFT-AIEV--LPNSVSDLMNLISLLLQRCRRLKR-----VP-SV 557 (837)
Q Consensus 488 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~l~~-----lp-~~ 557 (837)
.+++|+.|+++++. +.. .+..+...+++|++|+|++| .+.. ++..+..+++|++|++++|. ++. ++ ..
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 45677777777663 322 22222235677777777776 3433 44444467777777777765 222 22 12
Q ss_pred cccCCCCEEeccCCc--Cc--cccccccCCCCCCEEeccCC-CCCCCCCCcccCCccCcEEEc
Q 038611 558 AKLLALQHLDLRGTS--IE--EVPEGMQMLENLSHLYLYSP-PLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 558 ~~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~-~l~~~p~~~l~~l~~L~~L~l 615 (837)
..+++|++|++++|. +. .++.-+.++++|++|++++| .+..+|.. +.++++|+.|++
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l 242 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGT 242 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEEC
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccc
Confidence 355677777777664 21 12222344577777777766 23343332 556667777765
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=8.4e-13 Score=138.11 Aligned_cols=152 Identities=24% Similarity=0.378 Sum_probs=132.7
Q ss_pred cccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh
Q 038611 454 HLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS 533 (837)
Q Consensus 454 ~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 533 (837)
.+..++. .....+++.+++.+|.+..+++ +..+++|+.|++++| .+..++. +..+++|++|++++|.+..++ .
T Consensus 57 ~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~ 129 (291)
T 1h6t_A 57 DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDIN-G 129 (291)
T ss_dssp CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCCCCCG-G
T ss_pred CcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCcCCCCh-h
Confidence 3344443 3445789999999999999876 689999999999999 6777765 689999999999999999885 6
Q ss_pred hhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEE
Q 038611 534 VSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRL 613 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 613 (837)
+..+++|++|++++| .++.++.+.++++|++|++++|.+..++. +..+++|++|++++|.+..+|. +..+++|+.|
T Consensus 130 l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L 205 (291)
T 1h6t_A 130 LVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205 (291)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred hcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEE
Confidence 899999999999996 56777889999999999999999998877 9999999999999999999865 7999999999
Q ss_pred Ecc
Q 038611 614 SLY 616 (837)
Q Consensus 614 ~l~ 616 (837)
++.
T Consensus 206 ~l~ 208 (291)
T 1h6t_A 206 ELF 208 (291)
T ss_dssp EEE
T ss_pred ECc
Confidence 993
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=8.6e-13 Score=131.84 Aligned_cols=143 Identities=21% Similarity=0.261 Sum_probs=121.2
Q ss_pred cccccCCCchhhhcccccEEEccccCCCCCC-CCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc
Q 038611 452 REHLLEFPGEQEWKANLERVSLMMNDIDEIP-SNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL 530 (837)
Q Consensus 452 ~~~~~~~p~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l 530 (837)
+..+..+|.. ....++.+++.+|.+..++ ...+..+++|+.|++++| .+..++...|.++++|++|+|++|.+..+
T Consensus 20 ~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 20 NQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp SSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence 3455667753 3456789999999999884 456789999999999999 78888887789999999999999999988
Q ss_pred Ch-hhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCCCC
Q 038611 531 PN-SVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPPLK 597 (837)
Q Consensus 531 p~-~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~ 597 (837)
|. .+..+++|++|+|++|......| .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 75 48899999999999965444445 699999999999999999988 667899999999999998754
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.3e-12 Score=134.47 Aligned_cols=142 Identities=19% Similarity=0.252 Sum_probs=125.9
Q ss_pred hcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhccccccee
Q 038611 464 WKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISL 543 (837)
Q Consensus 464 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 543 (837)
...+++.+++.+|.+..++ .+..+++|+.|++++| .+..++. +..+++|++|+|++|.+..+|.. .. .+|++|
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTTC-CC-SSCCEE
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCcc-cc-CcccEE
Confidence 3468999999999999887 3578999999999999 7888887 69999999999999999998854 33 999999
Q ss_pred cccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEcc
Q 038611 544 LLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616 (837)
Q Consensus 544 ~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 616 (837)
++++| .++.+|.+.++++|++|++++|.+..+| .+..+++|++|++++|.+..+ .. +..+++|+.|++.
T Consensus 112 ~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 112 FLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG-LTRLKKVNWIDLT 180 (263)
T ss_dssp ECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT-STTCCCCCEEEEE
T ss_pred EccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH-hccCCCCCEEeCC
Confidence 99996 6777888999999999999999999987 689999999999999999888 33 8999999999993
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1e-12 Score=149.30 Aligned_cols=128 Identities=21% Similarity=0.336 Sum_probs=86.8
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceeccc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQ 546 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 546 (837)
+++.+++.+|.+..+|... +++|++|++++| .+..+| ..+++|++|+|++|.+..+|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5677777777777766544 256777777777 556666 245677777777777777776 444 77777777
Q ss_pred CccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 547 RCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 547 ~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
+| .++.+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. ++ ++|+.|++
T Consensus 129 ~N-~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~L 187 (571)
T 3cvr_A 129 NN-QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDV 187 (571)
T ss_dssp SS-CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEEC
T ss_pred CC-cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEEC
Confidence 74 4555665 56777777777777777765 45677777777777777666 34 66777777
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=143.67 Aligned_cols=146 Identities=23% Similarity=0.172 Sum_probs=65.8
Q ss_pred ccEEEccccCCCCCCCCCC--CCCCcccEEEccCCcCccc-cC---hhHhhcCCCCcEEEecCCCCcccC-hhhhccccc
Q 038611 468 LERVSLMMNDIDEIPSNMS--PHCEILSTLLLQRNINLQW-IP---ECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNL 540 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~-~~---~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L 540 (837)
++++++.+|.+....+..+ ..+++|++|++++|. +.. .+ ...+..+++|++|+|++|.+..+| ..++.+++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 5555555555443333222 445555555555552 221 11 111234555555555555554433 344455555
Q ss_pred ceecccCccccCC--Cc---cccccCCCCEEeccCCcCcccccc----ccCCCCCCEEeccCCCCCCC-CCCcccCC---
Q 038611 541 ISLLLQRCRRLKR--VP---SVAKLLALQHLDLRGTSIEEVPEG----MQMLENLSHLYLYSPPLKEL-PAGLLPRL--- 607 (837)
Q Consensus 541 ~~L~L~~~~~l~~--lp---~~~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~l~~~-p~~~l~~l--- 607 (837)
++|+|++|..... ++ .++.+++|++|++++|.++.+|.. +..+++|++|++++|.+..+ |.. ++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCc
Confidence 5555555432221 11 124455555555555555444331 24445555555555555443 332 3333
Q ss_pred ccCcEEEc
Q 038611 608 RKLCRLSL 615 (837)
Q Consensus 608 ~~L~~L~l 615 (837)
++|++|++
T Consensus 251 ~~L~~L~L 258 (310)
T 4glp_A 251 SALNSLNL 258 (310)
T ss_dssp TTCCCEEC
T ss_pred CcCCEEEC
Confidence 35555555
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=9e-13 Score=151.43 Aligned_cols=155 Identities=25% Similarity=0.380 Sum_probs=133.4
Q ss_pred ccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhh
Q 038611 455 LLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSV 534 (837)
Q Consensus 455 ~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i 534 (837)
+..+|. .....+++.|++++|.+..+++ +..+++|+.|++++| .+..+|. +..+++|++|+|++|.+..+| .+
T Consensus 55 i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~-~l 127 (605)
T 1m9s_A 55 IKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGISDIN-GL 127 (605)
T ss_dssp CCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCTT--STTCTTCCEEECTTSCCCCCG-GG
T ss_pred CCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCChh--hccCCCCCEEEecCCCCCCCc-cc
Confidence 334443 3455789999999999999876 689999999999999 6777763 689999999999999999876 68
Q ss_pred hcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEE
Q 038611 535 SDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLS 614 (837)
Q Consensus 535 ~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~ 614 (837)
..+++|+.|+|++| .++.++.+..+++|++|+|++|.+..+++ +..+++|++|+|++|.+..+|. +..+++|+.|+
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~ 203 (605)
T 1m9s_A 128 VHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 203 (605)
T ss_dssp GGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred cCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccCCCCCEEE
Confidence 99999999999996 56677889999999999999999998877 9999999999999999998864 89999999999
Q ss_pred ccccchh
Q 038611 615 LYFGWEA 621 (837)
Q Consensus 615 l~~~~~~ 621 (837)
+ ..+..
T Consensus 204 L-~~N~l 209 (605)
T 1m9s_A 204 L-FSQEC 209 (605)
T ss_dssp C-CSEEE
T ss_pred c-cCCcC
Confidence 9 44433
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.2e-12 Score=123.04 Aligned_cols=132 Identities=25% Similarity=0.235 Sum_probs=101.8
Q ss_pred ccccEEEccccCCC--CCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc-cChhhhcccccce
Q 038611 466 ANLERVSLMMNDID--EIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV-LPNSVSDLMNLIS 542 (837)
Q Consensus 466 ~~~~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~ 542 (837)
.+++.+++.+|.+. .+|.. +..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 46888888888887 66554 577888888888888 46666 335788888888888888876 6766677888888
Q ss_pred ecccCccccCCCc---cccccCCCCEEeccCCcCccccc----cccCCCCCCEEeccCCCCCCCCCC
Q 038611 543 LLLQRCRRLKRVP---SVAKLLALQHLDLRGTSIEEVPE----GMQMLENLSHLYLYSPPLKELPAG 602 (837)
Q Consensus 543 L~L~~~~~l~~lp---~~~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~l~~~p~~ 602 (837)
|++++| .++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+.++|..
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 888886 455553 57788888888888888887776 677888888888888887777654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=9.3e-13 Score=155.32 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=101.0
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCc----CccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccc
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNI----NLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLI 541 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 541 (837)
..++++.+..|.+...+...+ ....|+.+.+.... .+. ++...|..++.|++|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 357788888887776654332 22334433332211 222 556667899999999999999999999999999999
Q ss_pred eecccCccccCCCc-cccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccch
Q 038611 542 SLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWE 620 (837)
Q Consensus 542 ~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~ 620 (837)
+|+|++| .++.+| .+++|++|++|+|++|.+..+|..+++|++|++|+|++|.+..+|.+ |++|++|++|++ ..+.
T Consensus 251 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L-~~N~ 327 (727)
T 4b8c_D 251 RLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGV-EGNP 327 (727)
T ss_dssp CCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEEC-TTSC
T ss_pred EEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeC-CCCc
Confidence 9999996 566888 79999999999999999999999999999999999999999999988 899999999999 5554
Q ss_pred hhhhhHHHH
Q 038611 621 ALEETVEET 629 (837)
Q Consensus 621 ~~~~~~~~l 629 (837)
+....+..+
T Consensus 328 l~~~~p~~~ 336 (727)
T 4b8c_D 328 LEKQFLKIL 336 (727)
T ss_dssp CCSHHHHHH
T ss_pred cCCCChHHH
Confidence 444444333
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.3e-12 Score=124.66 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=76.0
Q ss_pred CcccEEEccCCcCcc--ccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cccccCCCCEE
Q 038611 490 EILSTLLLQRNINLQ--WIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHL 566 (837)
Q Consensus 490 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 566 (837)
++|+.|++++| .+. .+|.. +..+++|++|++++|.+..+ ..+..+++|++|++++|.....+| .+.++++|++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56667777666 344 55544 36666777777777766665 456666667777776654333355 45556666777
Q ss_pred eccCCcCcccc--ccccCCCCCCEEeccCCCCCCCCC---CcccCCccCcEEEc
Q 038611 567 DLRGTSIEEVP--EGMQMLENLSHLYLYSPPLKELPA---GLLPRLRKLCRLSL 615 (837)
Q Consensus 567 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~---~~l~~l~~L~~L~l 615 (837)
++++|.+..+| ..+..+++|++|++++|.+..+|. ..+..+++|+.|++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 77666666655 456666666666666666666654 23555666666655
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=3.9e-12 Score=144.47 Aligned_cols=168 Identities=21% Similarity=0.230 Sum_probs=123.7
Q ss_pred cccCCCchhhhcccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh
Q 038611 454 HLLEFPGEQEWKANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS 533 (837)
Q Consensus 454 ~~~~~p~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 533 (837)
.+..+|... ..+++.+++++|.+..+| ..+++|++|++++| .+..+|. + .+ +|++|+|++|.+..+|.
T Consensus 70 ~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~- 137 (571)
T 3cvr_A 70 NLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-L-PA--SLKHLDVDNNQLTMLPE- 137 (571)
T ss_dssp CCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-C-CT--TCCEEECCSSCCSCCCC-
T ss_pred CCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-h-hc--CCCEEECCCCcCCCCCC-
Confidence 344555532 357889999999888887 34688899999888 6777877 3 43 88999999988888886
Q ss_pred hhcccccceecccCccccCCCccccccCCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCCCCCcccCCccC---
Q 038611 534 VSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKL--- 610 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L--- 610 (837)
.+++|++|++++| .++.+|. .+++|++|++++|.+..+|. +. ++|++|++++|.++.+|. ++. +|
T Consensus 138 --~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~ 205 (571)
T 3cvr_A 138 --LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV--RNHHS 205 (571)
T ss_dssp --CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC--------
T ss_pred --cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH--hhhcc
Confidence 6788899999885 4666776 57788889998888888887 55 788888888888888877 343 56
Q ss_pred ----cEEEccccchhhhhhHHHHhhhhhccCeeEEeeccccc
Q 038611 611 ----CRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 611 ----~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
+.|++ .++.... .+..+..+ ++|+.|+++.|.+..
T Consensus 206 ~~~L~~L~L-s~N~l~~-lp~~l~~l-~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 206 EETEIFFRC-RENRITH-IPENILSL-DPTCTIILEDNPLSS 244 (571)
T ss_dssp --CCEEEEC-CSSCCCC-CCGGGGGS-CTTEEEECCSSSCCH
T ss_pred cccceEEec-CCCccee-cCHHHhcC-CCCCEEEeeCCcCCC
Confidence 88888 4444332 33445667 888888888887754
No 126
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=137.12 Aligned_cols=176 Identities=18% Similarity=0.070 Sum_probs=136.9
Q ss_pred hhcccccEEEccccCCCCCCC----CCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc---cC--hh
Q 038611 463 EWKANLERVSLMMNDIDEIPS----NMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV---LP--NS 533 (837)
Q Consensus 463 ~~~~~~~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~---lp--~~ 533 (837)
....+++.+++++|.+..... ..+..+++|++|++++| .+..++...|..+++|++|+|++|.+.. ++ ..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 345679999999999876322 22346899999999999 6777877777899999999999998653 33 23
Q ss_pred hhcccccceecccCccccCCCcc-----ccccCCCCEEeccCCcCccc-cccccCC---CCCCEEeccCCCCCCCCCCcc
Q 038611 534 VSDLMNLISLLLQRCRRLKRVPS-----VAKLLALQHLDLRGTSIEEV-PEGMQML---ENLSHLYLYSPPLKELPAGLL 604 (837)
Q Consensus 534 i~~l~~L~~L~L~~~~~l~~lp~-----~~~l~~L~~L~l~~~~i~~l-p~~~~~l---~~L~~L~l~~~~l~~~p~~~l 604 (837)
++.+++|++|++++| .++.+|. +..+++|++|++++|.+..+ |..+..+ ++|++|++++|.++.+|..+
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~- 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL- 270 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-
Confidence 468999999999996 4565552 46889999999999998876 8777766 69999999999999998873
Q ss_pred cCCccCcEEEccccchhhhhhHHHHhhhhhccCeeEEeecccc
Q 038611 605 PRLRKLCRLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLN 647 (837)
Q Consensus 605 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 647 (837)
. ++|++|++ ..+...... .+..+ ++|+.|+++.|.+.
T Consensus 271 ~--~~L~~L~L-s~N~l~~~~--~~~~l-~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 271 P--AKLRVLDL-SSNRLNRAP--QPDEL-PEVDNLTLDGNPFL 307 (310)
T ss_dssp C--SCCSCEEC-CSCCCCSCC--CTTSC-CCCSCEECSSTTTS
T ss_pred c--CCCCEEEC-CCCcCCCCc--hhhhC-CCccEEECcCCCCC
Confidence 3 79999999 444444321 25677 89999999988764
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=9.8e-13 Score=122.69 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=65.6
Q ss_pred CcccEEEccCCcCcc--ccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cccccCCCCEE
Q 038611 490 EILSTLLLQRNINLQ--WIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHL 566 (837)
Q Consensus 490 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L 566 (837)
++|+.|++++| .+. .+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.....+| .+.++++|++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44555555555 233 34432 35555555555555555554 445555555555555543322244 34445666666
Q ss_pred eccCCcCcccc--ccccCCCCCCEEeccCCCCCCCCC---CcccCCccCcEEEc
Q 038611 567 DLRGTSIEEVP--EGMQMLENLSHLYLYSPPLKELPA---GLLPRLRKLCRLSL 615 (837)
Q Consensus 567 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~~~p~---~~l~~l~~L~~L~l 615 (837)
++++|.+..+| ..++.+++|++|++++|.+..+|. ..++.+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 66666555543 455666666666666666655554 33555566666554
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=9.7e-11 Score=128.10 Aligned_cols=289 Identities=15% Similarity=0.123 Sum_probs=174.5
Q ss_pred ccccccchhHHHHHHHHHhc----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLM----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~ 180 (837)
..++|| +.+++.+..++. ....+.+.|+|++|+||||+|+.+++...... +.-..++|+++....+...+.
T Consensus 19 ~~~~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHR--EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTC--HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 579999 778888888774 34578899999999999999999998763221 112346788888888889999
Q ss_pred HHHHHHhcCCCCCCcc-HHHHHHHHHHHHh-cCCeEEEEEeCCCCCcc-------ccccccCCCCC--CCCcEEEEEeCC
Q 038611 181 TEIATALKESLPENED-KVSRAGRLLGMLK-AKAKFVLILDDMWEAFP-------LEKVGIPEPNK--ENGCKLVITTRS 249 (837)
Q Consensus 181 ~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~~s~iivTtR~ 249 (837)
..++.+++...+.... .......+...+. .+++.+|||||++.... +..+....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999999765443222 3333445555543 35689999999985321 11111111110 345577777776
Q ss_pred hh--------HhhhCCcceEEeccCCHHhHHHHHHHHhCC--CCCCCchhhHHHHHHHHHHhC---CchhHH-HHHHHhc
Q 038611 250 YR--------VCRSMKCKQVEVELLSKEEAFNLFIDRVGS--SILQVPTLNREIINSIVEECG---CLPLAI-VTVAASM 315 (837)
Q Consensus 250 ~~--------v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPLai-~~~~~~l 315 (837)
.. +........+.+++++.++...++...+.. ....- ..+....+++.++ |.|..+ ..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 53 223333334899999999999999887532 10111 2235677888887 999433 3332221
Q ss_pred c-----C--CcCHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhc-cCCCCcccCHHHHHHHHH
Q 038611 316 S-----G--EEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCA-LYPKNFLILKDELIDYWI 387 (837)
Q Consensus 316 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~w~ 387 (837)
. + .-+.+.+..++..... ..+.-++..|+ ++.+..+..++ ++.....+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~-~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLP-LHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSC-HHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 1245666666654321 23455677888 66666665555 343222344443333322
Q ss_pred H----hCCCccchhHHHHHHhHHHHHHHHHhhcccccc
Q 038611 388 A----EGVIEELKDVQAKYDRGHTILNRLVNCCLLESA 421 (837)
Q Consensus 388 a----eg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 421 (837)
. .| +.. .....+..+++.|...++++..
T Consensus 320 ~~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 1 23 111 1124566789999999999874
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=1.6e-10 Score=126.17 Aligned_cols=286 Identities=11% Similarity=0.022 Sum_probs=168.4
Q ss_pred ccccccchhHHHHHHHHHh----cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc----CC-CCeEEEEEeCCCc-CHH
Q 038611 108 ETLVGEKTKKVVEIIWENL----MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKET----NK-FNVVIWVTVSQPL-DLI 177 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~~-f~~~~wv~vs~~~-~~~ 177 (837)
..++|| +++++.+..++ ..+..+.+.|+|++|+||||+|+.+++...... .. ...++|++++... +..
T Consensus 20 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFR--EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTC--HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 579999 55666666544 345578999999999999999999998863321 11 3457888877766 888
Q ss_pred HHHHHHHHHhc-CCCCC-CccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc--cccc-ccCCCCCCCCcEEEEEeCChhH
Q 038611 178 KLQTEIATALK-ESLPE-NEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP--LEKV-GIPEPNKENGCKLVITTRSYRV 252 (837)
Q Consensus 178 ~~~~~i~~~l~-~~~~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l-~~~~~~~~~~s~iivTtR~~~v 252 (837)
.+...++.++. ..... ..........+...+ ..++.+|||||++.... .... ...+.....+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 88899988883 22211 112233344555555 44444999999975321 1111 1111111157788889887532
Q ss_pred --------hhhCCcceEEeccCCHHhHHHHHHHHhCC--CCCCCchhhHHHHHHHHHHhC---Cchh-HHHHHHHh--cc
Q 038611 253 --------CRSMKCKQVEVELLSKEEAFNLFIDRVGS--SILQVPTLNREIINSIVEECG---CLPL-AIVTVAAS--MS 316 (837)
Q Consensus 253 --------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~--l~ 316 (837)
....+. .+.+++++.++...++...+.. ....- -.+....|++.|+ |.|. |+..+-.+ +.
T Consensus 177 ~~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 177 RDYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HhhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 122222 5999999999999999987532 11111 2345677888888 9887 33333322 22
Q ss_pred C---CcCHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCCCcccCHHHHHHHHHHhCCCc
Q 038611 317 G---EEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPKNFLILKDELIDYWIAEGVIE 393 (837)
Q Consensus 317 ~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~ 393 (837)
. .-+.+.+..++++... ..+..++..|+ ++.+..+..++....+-.+. .......-..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~-~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~ 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALP-FHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSC-HHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC
T ss_pred cCCCccCHHHHHHHHHHHhc-------------chHHHHHHcCC-HHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC
Confidence 1 2245667766654421 23556678888 67666666566511101111 01111111122 11
Q ss_pred cchhHHHHHHhHHHHHHHHHhhcccccc
Q 038611 394 ELKDVQAKYDRGHTILNRLVNCCLLESA 421 (837)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 421 (837)
. .......+++..|.+.++++..
T Consensus 317 ~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 P-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp C-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred C-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 1 1124566789999999999874
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=2.5e-10 Score=124.96 Aligned_cols=290 Identities=15% Similarity=0.144 Sum_probs=174.1
Q ss_pred ccccccchhHHHHHHHHHhcC----CCCC--EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMG----DKAP--KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
..++|| +.+++.+..++.. .... .+.|+|++|+||||||+.+++.... .. -..++|++++...+...+..
T Consensus 17 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHR--EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD-KT-TARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTC--HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT-SC-CCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh-hc-CeeEEEEeCccCCCHHHHHH
Confidence 579999 6677777766643 3334 8999999999999999999987621 11 23577888888788889999
Q ss_pred HHHHHhcCCCCCCc-cHHHHHHHHHHHHh-cCCeEEEEEeCCCCCc--cccccccCCCC-CC---CCcEEEEEeCChhHh
Q 038611 182 EIATALKESLPENE-DKVSRAGRLLGMLK-AKAKFVLILDDMWEAF--PLEKVGIPEPN-KE---NGCKLVITTRSYRVC 253 (837)
Q Consensus 182 ~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~l~~~~~~-~~---~~s~iivTtR~~~v~ 253 (837)
.++..++...+... ........+...+. .+++.+||||+++... .+..+...+.. .. .+..||+||+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99998876543222 23333333333332 3568999999997642 22222222211 11 466788888776443
Q ss_pred hh--------CCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHh---------CCchhHHHHHHHhcc
Q 038611 254 RS--------MKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEEC---------GCLPLAIVTVAASMS 316 (837)
Q Consensus 254 ~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~l~ 316 (837)
.. .....+.+.+++.++..+++...+...... ...-.+....|++.+ +|.|..+..+.....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22 222248999999999999998875421000 011356788899999 788765544433211
Q ss_pred ------CCc--CHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCC---CCcccCHHHHHHH
Q 038611 317 ------GEE--EIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYP---KNFLILKDELIDY 385 (837)
Q Consensus 317 ------~~~--~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~~ 385 (837)
+.. +......+..... ...+.-.+..|+ .+.+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLP-LHEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSC-HHHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCC-HHHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 111 2233333322211 122344567787 67777777676543 2214555555554
Q ss_pred HHH----hCCCccchhHHHHHHhHHHHHHHHHhhccccccc
Q 038611 386 WIA----EGVIEELKDVQAKYDRGHTILNRLVNCCLLESAR 422 (837)
Q Consensus 386 w~a----eg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 422 (837)
+.. .|...- .......++++|.+++++....
T Consensus 318 ~~~~~~~~~~~~~------~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 318 YKIVCEEYGERPR------VHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHTTCCCC------CHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHcCCCCC------CHHHHHHHHHHHHhCCCeEEee
Confidence 433 221110 1234567899999999998754
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=120.54 Aligned_cols=119 Identities=19% Similarity=0.286 Sum_probs=83.4
Q ss_pred cEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc--cccccCCCCEEeccC
Q 038611 493 STLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRG 570 (837)
Q Consensus 493 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~ 570 (837)
++++++++ .+..+|..+ .+.|++|+|++|.+..+|..+..+++|++|+|++|. ++.++ .+.++++|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 34555555 455555543 245677777777777777777777777777777743 44444 477777888888888
Q ss_pred CcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEcc
Q 038611 571 TSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLY 616 (837)
Q Consensus 571 ~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~ 616 (837)
|.+..+|. .+..+++|++|++++|.+..+|.+.+..+++|+.|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 87777765 46778888888888888888887767788888888883
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=1.4e-11 Score=120.03 Aligned_cols=122 Identities=26% Similarity=0.372 Sum_probs=58.4
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChh-HhhcCCCCcEEEecCCCCccc-Chhhhcccccceeccc
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPEC-FFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQ 546 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 546 (837)
+.+++++|.+..+|.... ++|++|++++| .+..++.. +|..+++|++|+|++|.+..+ |..+..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 455556666655554332 25555555555 44444432 345555555555555555544 3444555555555555
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCccc-cccccCCCCCCEEeccCCC
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEV-PEGMQMLENLSHLYLYSPP 595 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~ 595 (837)
+|. ++.++ .+.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 532 22222 244444444444444444433 3334444444444444443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=5.8e-12 Score=121.03 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=85.7
Q ss_pred CCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-c-ccccCCCC
Q 038611 487 PHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-S-VAKLLALQ 564 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~ 564 (837)
..+++|+.|++++| .+..+|. +....++|++|++++|.+..+ ..+..+++|++|++++| .++.+| . +..+++|+
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 45667777777777 5555643 323334778888887777776 46777777777777774 455555 4 37777777
Q ss_pred EEeccCCcCccccc--cccCCCCCCEEeccCCCCCCCCCC---cccCCccCcEEEc
Q 038611 565 HLDLRGTSIEEVPE--GMQMLENLSHLYLYSPPLKELPAG---LLPRLRKLCRLSL 615 (837)
Q Consensus 565 ~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~~---~l~~l~~L~~L~l 615 (837)
+|++++|.+..+|. .+..+++|++|++++|.+..+|.. .+..+++|+.|++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 77777777777776 677777788888877777766653 3566667777766
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=3.4e-11 Score=117.32 Aligned_cols=123 Identities=29% Similarity=0.486 Sum_probs=107.0
Q ss_pred cEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccC
Q 038611 469 ERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQR 547 (837)
Q Consensus 469 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~ 547 (837)
+.+++.+|.+..+|.... ++|+.|++++| .+..+|. .|.++++|++|+|++|.+..++ ..+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n-~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGN-QFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSS-CCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCC-cCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 578889999999987653 68999999999 7888885 4699999999999999999887 5689999999999999
Q ss_pred ccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccCCCCC
Q 038611 548 CRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYSPPLK 597 (837)
Q Consensus 548 ~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~ 597 (837)
|. ++.+| .+.++++|++|+|++|.+..+|.. +..+++|++|++++|.+.
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 65 66665 599999999999999999999885 788999999999998653
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.9e-11 Score=119.18 Aligned_cols=121 Identities=22% Similarity=0.236 Sum_probs=103.8
Q ss_pred cEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh--hhcccccceecccCccccCCCc-cccccCCCCEEecc
Q 038611 493 STLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS--VSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLR 569 (837)
Q Consensus 493 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~ 569 (837)
++++++++ .+..+|..++ ..|++|++++|.+..+|.. +..+++|++|+|++|..-...| .+.++++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999988 7888997653 3899999999999988864 8999999999999965444446 79999999999999
Q ss_pred CCcCcccccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 570 GTSIEEVPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 570 ~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
+|.+..+|.. +..+++|++|++++|.+..+++..++.+++|++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 9999988765 78999999999999999987666689999999999943
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=1.3e-11 Score=114.92 Aligned_cols=123 Identities=22% Similarity=0.255 Sum_probs=106.3
Q ss_pred ccccEEEccccCCC--CCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcc-cChhhhcccccce
Q 038611 466 ANLERVSLMMNDID--EIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEV-LPNSVSDLMNLIS 542 (837)
Q Consensus 466 ~~~~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~ 542 (837)
.+++.+++.+|.+. .+|. .+..+++|+.|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 57999999999998 6665 5588999999999999 67766 446899999999999999987 7877788999999
Q ss_pred ecccCccccCCCc---cccccCCCCEEeccCCcCccccc----cccCCCCCCEEeccC
Q 038611 543 LLLQRCRRLKRVP---SVAKLLALQHLDLRGTSIEEVPE----GMQMLENLSHLYLYS 593 (837)
Q Consensus 543 L~L~~~~~l~~lp---~~~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~ 593 (837)
|++++|. ++.+| .++.+++|++|++++|.+..+|. .+..+++|++|++++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999965 66653 68999999999999999998886 678999999999863
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.1e-11 Score=139.20 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=92.9
Q ss_pred cccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCccccccCCCCEEeccC
Q 038611 491 ILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVPSVAKLLALQHLDLRG 570 (837)
Q Consensus 491 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 570 (837)
.|++|++++| .+..+|. |+.+++|++|+|++|.+..+|..++.+++|++|+|++| .++.+|.++++++|++|+|++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCC
Confidence 3677788777 6666775 57888888888888888888888888888888888884 466677888888888888888
Q ss_pred CcCccc--cccccCCCCCCEEeccCCCCCCCCCCc---ccCCccCcEEEc
Q 038611 571 TSIEEV--PEGMQMLENLSHLYLYSPPLKELPAGL---LPRLRKLCRLSL 615 (837)
Q Consensus 571 ~~i~~l--p~~~~~l~~L~~L~l~~~~l~~~p~~~---l~~l~~L~~L~l 615 (837)
|.+..+ |..++.+++|++|++++|.+..+|+.. +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888877 778888888888888888887776542 233667777653
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.5e-10 Score=126.62 Aligned_cols=289 Identities=14% Similarity=0.136 Sum_probs=169.0
Q ss_pred ccccccchhHHHHHHHHHhc----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLM----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
..++|| +.+++.+.+++. ....+.+.|+|++|+||||||+.+++...........++|+++....+...+...+
T Consensus 20 ~~~~gr--~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHR--EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTC--HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 579999 778888888876 45578999999999999999999998763321102357888877766777888888
Q ss_pred HHHhcCCCCCCc-cHHHHHHHHHHHHhc-CCeEEEEEeCCCCC------ccccccccCCCC-CCCCcEEEEEeCChhHhh
Q 038611 184 ATALKESLPENE-DKVSRAGRLLGMLKA-KAKFVLILDDMWEA------FPLEKVGIPEPN-KENGCKLVITTRSYRVCR 254 (837)
Q Consensus 184 ~~~l~~~~~~~~-~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~------~~~~~l~~~~~~-~~~~s~iivTtR~~~v~~ 254 (837)
+.+++...+... ........+...+.. +++.+||||+++.. ..+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 887765433222 233334444444433 45899999999752 122222111100 134567788888764322
Q ss_pred --------hCCcceEEeccCCHHhHHHHHHHHhCCC--CCCCchhhHHHHHHHHHHhC---CchhHHHHHHHhc-c----
Q 038611 255 --------SMKCKQVEVELLSKEEAFNLFIDRVGSS--ILQVPTLNREIINSIVEECG---CLPLAIVTVAASM-S---- 316 (837)
Q Consensus 255 --------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~---GlPLai~~~~~~l-~---- 316 (837)
......+.+++++.++..+++...+... .... ..+....|++.++ |.|..+..+.... .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL---PDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 2222249999999999999998865321 1111 3556777788887 9998544333221 1
Q ss_pred -C--CcCHHHHHHHHHHHHhccccCCCCchhhhhhhHhhhhcCCchhhHHHHhhhccCCC-C-cccCHHHHHHHHH--H-
Q 038611 317 -G--EEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLRQCFLYCALYPK-N-FLILKDELIDYWI--A- 388 (837)
Q Consensus 317 -~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w~--a- 388 (837)
+ .-+...+..++.... ...+.-++..+| +..+..+..++...+ + ..+....+.+... +
T Consensus 255 ~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLP-FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSC-HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 123455555544332 123455667787 666666665553211 1 1123333322221 1
Q ss_pred -hCCCccchhHHHHHHhHHHHHHHHHhhcccccc
Q 038611 389 -EGVIEELKDVQAKYDRGHTILNRLVNCCLLESA 421 (837)
Q Consensus 389 -eg~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 421 (837)
.|. .. ........+++.|.+.++++..
T Consensus 321 ~~g~-~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLGV-EA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHTC-CC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCC-CC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 121 11 0113456689999999999763
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=6.8e-11 Score=113.65 Aligned_cols=99 Identities=28% Similarity=0.472 Sum_probs=52.9
Q ss_pred CCcEEEecCCCCcccChh-hhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEec
Q 038611 516 GLKILNLSFTAIEVLPNS-VSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYL 591 (837)
Q Consensus 516 ~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 591 (837)
+|++|++++|.+..+|.. +..+++|++|++++| .++.+| .+..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 444444444444444322 244444444444443 233333 245555566666666656555543 356666666666
Q ss_pred cCCCCCCCCCCcccCCccCcEEEc
Q 038611 592 YSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 592 ~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
++|.+..+|...+..+++|+.|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCcceEeCHHHhcCCcccCEEEe
Confidence 666666666655566666666666
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.3e-11 Score=145.58 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=83.3
Q ss_pred CCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-ccccc
Q 038611 482 PSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKL 560 (837)
Q Consensus 482 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l 560 (837)
++..+..++.|++|++++| .+..+|..++ ++++|++|+|++|.+..+|..++.|++|++|+|++|. ++.+| .+++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 3445567777888888777 5667777664 7778888888888877778777888888888888754 55777 67788
Q ss_pred CCCCEEeccCCcCccccccccCCCCCCEEeccCCCCCCC
Q 038611 561 LALQHLDLRGTSIEEVPEGMQMLENLSHLYLYSPPLKEL 599 (837)
Q Consensus 561 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~~ 599 (837)
++|++|+|++|.+..+|..+++|++|++|+|++|.+...
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 888888888887777887788888888888887776643
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.9e-11 Score=117.48 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=110.4
Q ss_pred hhcCCCCcEEEecCCCCcccChhhhccc-ccceecccCccccCCCccccccCCCCEEeccCCcCccccccc-cCCCCCCE
Q 038611 511 FAHMHGLKILNLSFTAIEVLPNSVSDLM-NLISLLLQRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSH 588 (837)
Q Consensus 511 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 588 (837)
+..+.+|++|++++|.+..+|. +..+. +|++|++++| .++.++.+..+++|++|++++|.+..+|.++ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4678899999999999998875 56655 9999999996 5666678999999999999999999999776 89999999
Q ss_pred EeccCCCCCCCCC-CcccCCccCcEEEccccchhhhhh---HHHHhhhhhccCeeEEeeccccc
Q 038611 589 LYLYSPPLKELPA-GLLPRLRKLCRLSLYFGWEALEET---VEETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 589 L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
|++++|.+..+|. ..++.+++|+.|++ .++...... ...+..+ ++|+.|+++.+....
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l-~~N~i~~~~~~~~~~~~~l-~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCI-LRNPVTNKKHYRLYVIYKV-PQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEEC-CSSGGGGSTTHHHHHHHHC-TTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEe-cCCCCCCcHhHHHHHHHHC-CccceeCCCcCCHHH
Confidence 9999999998886 23789999999999 444433222 2357888 999999998876543
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=2.2e-10 Score=110.09 Aligned_cols=125 Identities=26% Similarity=0.460 Sum_probs=108.2
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChh-hhcccccceeccc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNS-VSDLMNLISLLLQ 546 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 546 (837)
.+.+++..+.+..+|... .++|+.|++++| .+..++...|..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467889999999988654 378999999999 68888888889999999999999999988855 6899999999999
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCccccccc-cCCCCCCEEeccCCCCC
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSPPLK 597 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~ 597 (837)
+| .++.+| .+..+++|++|++++|.+..+|..+ ..+++|++|++++|.+.
T Consensus 85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 EN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 96 566666 3789999999999999999998874 78999999999998654
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=4.6e-10 Score=114.06 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=112.3
Q ss_pred ccccccchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|| +..++.+..++..+. .+.+.|+|++|+||||+|+.+++..... ..+.. ..+. .... ...+...
T Consensus 23 ~~~~g~--~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~-~~~~~---~~~~---~~~~-~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA---TPCG---VCDN-CREIEQG 92 (250)
T ss_dssp GGCCSC--HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT-TCSCS---SCCS---CSHH-HHHHHTT
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCC---CCCc---ccHH-HHHHhcc
Confidence 478999 677888888886554 4689999999999999999999876321 11100 0000 0000 0000000
Q ss_pred hcCC----CCCCccHHHHHHHHHHHH----hcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCChhHh-h-
Q 038611 187 LKES----LPENEDKVSRAGRLLGML----KAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRSYRVC-R- 254 (837)
Q Consensus 187 l~~~----~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~~~v~-~- 254 (837)
.... .............+.+.+ ..+++.+||+||++.. ..+..+...+.....+..+|+||+..... .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000001111222222222 1346799999999763 23333333232234567888888765421 1
Q ss_pred -hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHh
Q 038611 255 -SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAAS 314 (837)
Q Consensus 255 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 314 (837)
...+..+.+.+++.++..+++...+......- -.+....|++.|+|.|..+..+...
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11123389999999999999998764331121 3456789999999999998877643
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=6.1e-10 Score=111.36 Aligned_cols=183 Identities=12% Similarity=0.157 Sum_probs=113.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
..++|+ +..++.+.+++.....+.+.|+|++|+|||++|+.+++..... ..-...+.+..+...+...+...+....
T Consensus 17 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 17 DEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHh
Confidence 478998 6788889898887766669999999999999999999875221 1112234444444434333322222111
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChhHh-h--hCCcceEE
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYRVC-R--SMKCKQVE 262 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~v~-~--~~~~~~~~ 262 (837)
.... ...+++.+||+||++... ....+...+.....++.+|+||+..... . ......+.
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 1100 013578999999997642 2222322222224567888888875421 1 11122489
Q ss_pred eccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 263 VELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 263 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+.+++.++...++.+.+......- -.+....|++.++|.|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999988764321111 34567888999999998655543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=8e-13 Score=129.82 Aligned_cols=132 Identities=27% Similarity=0.316 Sum_probs=80.2
Q ss_pred ccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecccCccccCCCc-cccccCCCCEEeccCCcCcccccccc
Q 038611 503 LQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPEGMQ 581 (837)
Q Consensus 503 ~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~~~~ 581 (837)
+..+|.. |..+++|++|++++|.+..+| .+..+++|++|++++| .++.+| .+..+++|++|++++|.+..+| .+.
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 3444443 466667777777766666666 6666677777777664 345566 4555666777777777666665 466
Q ss_pred CCCCCCEEeccCCCCCCCCC-CcccCCccCcEEEccccchhhhh----------hHHHHhhhhhccCeeE
Q 038611 582 MLENLSHLYLYSPPLKELPA-GLLPRLRKLCRLSLYFGWEALEE----------TVEETGRLSDRLDTFE 640 (837)
Q Consensus 582 ~l~~L~~L~l~~~~l~~~p~-~~l~~l~~L~~L~l~~~~~~~~~----------~~~~l~~l~~~L~~L~ 640 (837)
.+++|++|++++|.+..++. ..+..+++|++|++ .++..... ....+..+ ++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l-~~N~l~~~~~~~~~~~~~~~~~~~~l-~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL-AGNPLYNDYKENNATSEYRIEVVKRL-PNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE-CSCHHHHHHHTTTTHHHHHHHHHHHC-SSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe-cCCccccccccccchHHHHHHHHHhC-CCcEEEC
Confidence 66677777777766665543 22566677777777 33332221 12346667 7777775
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=2.4e-12 Score=126.38 Aligned_cols=143 Identities=24% Similarity=0.282 Sum_probs=113.0
Q ss_pred ccEEEcccc--CCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceecc
Q 038611 468 LERVSLMMN--DIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLL 545 (837)
Q Consensus 468 ~~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 545 (837)
++...+..+ .++.+|. .+..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 444444433 3444433 3567899999999998 677787 358999999999999999999988888899999999
Q ss_pred cCccccCCCccccccCCCCEEeccCCcCccccc--cccCCCCCCEEeccCCCCCCCCC----------CcccCCccCcEE
Q 038611 546 QRCRRLKRVPSVAKLLALQHLDLRGTSIEEVPE--GMQMLENLSHLYLYSPPLKELPA----------GLLPRLRKLCRL 613 (837)
Q Consensus 546 ~~~~~l~~lp~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~~p~----------~~l~~l~~L~~L 613 (837)
++| .++.+|.+.++++|++|++++|.+..+|. .+..+++|++|++++|.+...++ ..+..+++|+.|
T Consensus 101 ~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 101 SYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred cCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 996 56777888899999999999999888765 68899999999999998754322 236788899998
Q ss_pred Ec
Q 038611 614 SL 615 (837)
Q Consensus 614 ~l 615 (837)
+-
T Consensus 180 d~ 181 (198)
T 1ds9_A 180 DG 181 (198)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=2.8e-10 Score=129.85 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=105.4
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccChhhhcccccceeccc
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLPNSVSDLMNLISLLLQ 546 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 546 (837)
.++.+++++|.+..+|. +..+++|+.|++++| .+..+|.. |+++++|++|+|++|.+..+| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 48899999999999986 688999999999999 67789886 499999999999999999999 89999999999999
Q ss_pred CccccCCC--c-cccccCCCCEEeccCCcCccccccc----cCCCCCCEEec
Q 038611 547 RCRRLKRV--P-SVAKLLALQHLDLRGTSIEEVPEGM----QMLENLSHLYL 591 (837)
Q Consensus 547 ~~~~l~~l--p-~~~~l~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l 591 (837)
+|. ++.+ | .++++++|++|++++|.+..+|+.+ ..+++|+.|++
T Consensus 517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 964 5555 7 8999999999999999999887654 34899999874
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.4e-09 Score=103.90 Aligned_cols=95 Identities=23% Similarity=0.457 Sum_probs=48.1
Q ss_pred cEEEecCCCCcccChhhhcccccceecccCccccCCC-c-cccccCCCCEEeccCCcCccccccc-cCCCCCCEEeccCC
Q 038611 518 KILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRV-P-SVAKLLALQHLDLRGTSIEEVPEGM-QMLENLSHLYLYSP 594 (837)
Q Consensus 518 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~ 594 (837)
+.++++++.+..+|..+. .+|++|+|++|. ++.+ | .+.++++|++|+|++|.+..+|..+ .++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 344444444444444332 445555555432 2222 2 3455555555555555555555442 45555555555555
Q ss_pred CCCCCCCCcccCCccCcEEEc
Q 038611 595 PLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 595 ~l~~~p~~~l~~l~~L~~L~l 615 (837)
.+..+|.+.+..+++|+.|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEEC
T ss_pred ccceeCHHHhccccCCCEEEe
Confidence 555555544555555555555
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.6e-09 Score=103.12 Aligned_cols=96 Identities=24% Similarity=0.424 Sum_probs=62.6
Q ss_pred CcEEEecCCCCcccChhhhcccccceecccCccccCCC-c-cccccCCCCEEeccCCcCcccccc-ccCCCCCCEEeccC
Q 038611 517 LKILNLSFTAIEVLPNSVSDLMNLISLLLQRCRRLKRV-P-SVAKLLALQHLDLRGTSIEEVPEG-MQMLENLSHLYLYS 593 (837)
Q Consensus 517 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-p-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~ 593 (837)
.+.++++++.+..+|..+. .+|++|+|++| .++.+ | .+.++++|++|+|++|.+..+|.+ +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666666665442 56666666664 34444 3 466677777777777777776665 36777777777777
Q ss_pred CCCCCCCCCcccCCccCcEEEc
Q 038611 594 PPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 594 ~~l~~~p~~~l~~l~~L~~L~l 615 (837)
|.++.+|.+.+.++++|+.|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CccCEeCHHHhcCCCCCCEEEe
Confidence 7777777665677777777777
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=1.7e-09 Score=103.31 Aligned_cols=104 Identities=28% Similarity=0.441 Sum_probs=72.7
Q ss_pred cEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-ChhhhcccccceecccCccccCCCc-c-ccccCCCCEEecc
Q 038611 493 STLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQRCRRLKRVP-S-VAKLLALQHLDLR 569 (837)
Q Consensus 493 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~ 569 (837)
++++++++ .+..+|..+ .++|++|+|++|.+..+ |..+..+++|++|+|++| .++.+| . +.++++|++|+|+
T Consensus 15 ~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCC-CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 45666665 556666543 26677777777777666 455667777777777774 455666 3 5778888888888
Q ss_pred CCcCcccccc-ccCCCCCCEEeccCCCCCCCCC
Q 038611 570 GTSIEEVPEG-MQMLENLSHLYLYSPPLKELPA 601 (837)
Q Consensus 570 ~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~p~ 601 (837)
+|.+..+|.. +..+++|++|++++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888775 7788888888888887766554
No 151
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.92 E-value=1.3e-09 Score=94.84 Aligned_cols=59 Identities=10% Similarity=0.270 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038611 2 RNLERPLQELNSKKADIEATLKAECDLENKQPSNEVNDWLENVERINSEAHSIEEEVKK 60 (837)
Q Consensus 2 ~~l~~~l~~l~~~l~~i~~~l~~a~~~~~~~~~~~v~~wl~~~~~~~~~~~d~~d~~~~ 60 (837)
.++++++++|+++|.+|+++|.+|+.++....+++|+.|+++||+++||++|++|+|..
T Consensus 22 ~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 22 KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999986422345789999999999999999999999853
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=6.2e-09 Score=98.93 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=66.4
Q ss_pred ccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCccc-ChhhhcccccceecccCccccCCCc--cccccCCCCEEec
Q 038611 492 LSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVL-PNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDL 568 (837)
Q Consensus 492 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l 568 (837)
.++++++++ .+..+|..+ .+.|++|+|++|.+..+ |..+..+++|++|+|++| .++.+| .+.++++|++|+|
T Consensus 11 ~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCC-CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 345555555 455555433 25566666666666665 345666666777777664 345555 2567777777777
Q ss_pred cCCcCcccccc-ccCCCCCCEEeccCCCCCCC
Q 038611 569 RGTSIEEVPEG-MQMLENLSHLYLYSPPLKEL 599 (837)
Q Consensus 569 ~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~~ 599 (837)
++|.+..+|.. +..+++|++|++++|.+.-.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77777777764 67788888888888776544
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=9.3e-09 Score=109.19 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=110.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
..++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++..... .....+++++.++..+...+ ++++..+
T Consensus 21 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGN--KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp GGCCSC--THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HHHHCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccChHHH-HHHHHHH
Confidence 478999 6778889888887776669999999999999999999875211 11112344444433332222 2222222
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChhH-hh--hCCcceEE
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYRV-CR--SMKCKQVE 262 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~v-~~--~~~~~~~~ 262 (837)
..... .+..+++.+||+||++... .++.+...+.....++.+|+||+...- .. ...+..+.
T Consensus 97 ~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 97 AQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 10000 0003458899999998642 233332222222456788888876432 11 11233489
Q ss_pred eccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHH
Q 038611 263 VELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVT 310 (837)
Q Consensus 263 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 310 (837)
+.+++.++...++...+......- -.+.+..|++.|+|.|..+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999988654221111 345678899999999955433
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=2.3e-08 Score=106.13 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=102.1
Q ss_pred CccccccchhHHHHHHHHHhc-----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 107 TETLVGEKTKKVVEIIWENLM-----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
...++|+ +..++.+..++. ......+.|+|++|+|||++|+.+++.. .. ..++++.+......++..
T Consensus 11 ~~~~ig~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 11 LDEYIGQ--ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp TTTCCSC--HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH
T ss_pred HHHhhCH--HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH
Confidence 3478998 555566655553 2345778999999999999999999875 11 234554443322222111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc--ccccccC--------CCC----------CCCCc
Q 038611 182 EIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP--LEKVGIP--------EPN----------KENGC 241 (837)
Q Consensus 182 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~--------~~~----------~~~~s 241 (837)
.+.. . ..++.+|+|||++.... ...+... ... .....
T Consensus 83 ----~l~~-----------------~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 ----ILAN-----------------S--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----HHTT-----------------T--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----HHHH-----------------h--ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1110 0 13456888899876421 1111000 000 01234
Q ss_pred EEEEEeCChh-H----hhhCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHhc
Q 038611 242 KLVITTRSYR-V----CRSMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAASM 315 (837)
Q Consensus 242 ~iivTtR~~~-v----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 315 (837)
.+|.||.... + .... ...+.+.+++.++...++...+......- -.+....|++.++|.|-.+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5666665432 1 1111 12389999999999999988775432222 35678899999999998887765543
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=2.2e-09 Score=114.28 Aligned_cols=164 Identities=17% Similarity=0.196 Sum_probs=112.9
Q ss_pred CCCCCCCCC--------CCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccC---
Q 038611 480 EIPSNMSPH--------CEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQR--- 547 (837)
Q Consensus 480 ~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~--- 547 (837)
.+|...|.+ |++|+.|.+.. .+..++...|.++++|+.|+++.+.+..++ ..+..+.++.++.+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 567777788 99999999987 578888888899999999999998877665 3455555666665443
Q ss_pred --------------ccccC---------CCc-c---------------------------c-cccCCCCEEeccCCcCcc
Q 038611 548 --------------CRRLK---------RVP-S---------------------------V-AKLLALQHLDLRGTSIEE 575 (837)
Q Consensus 548 --------------~~~l~---------~lp-~---------------------------~-~~l~~L~~L~l~~~~i~~ 575 (837)
|..++ .+| . + ..+++|+.+++++|.+..
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 11111 000 0 0 026788888888888888
Q ss_pred cccc-ccCCCCCCEEeccCCCCCCCCCCcccCCccCc-EEEccccchhhhhhHHHHhhhhhccCeeEEeeccccch
Q 038611 576 VPEG-MQMLENLSHLYLYSPPLKELPAGLLPRLRKLC-RLSLYFGWEALEETVEETGRLSDRLDTFEGHFSKLNNF 649 (837)
Q Consensus 576 lp~~-~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 649 (837)
+|.. +.++++|+.+++.+| ++.++.+.|.++++|+ .+.+.. .........+..+ .+|+.+.+..+.+..+
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c-~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGC-DNLRYVLATGDKITTL 312 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTC-TTEEEEEECSSCCCEE
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCC-ccCCEEEeCCCccCcc
Confidence 8764 678888888888776 7778887788888888 888732 2222333456667 7788888766655443
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.3e-07 Score=97.98 Aligned_cols=169 Identities=10% Similarity=0.089 Sum_probs=103.7
Q ss_pred cccccchhHHHHHHHHHh----cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCeEEEEEeCCCcCHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENL----MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~ 180 (837)
.+.|| +++.++|...+ .++..+.+.|+|++|.|||++|+.|++........ --.+++|++....+...+.
T Consensus 21 ~L~~R--e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQ--VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 47788 56666665554 46778999999999999999999999988432211 1135677777777888999
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHH--hcCCeEEEEEeCCCCCccccccccCC--CC-CCCCcEEEEEeCChh----
Q 038611 181 TEIATALKESLPENEDKVSRAGRLLGML--KAKAKFVLILDDMWEAFPLEKVGIPE--PN-KENGCKLVITTRSYR---- 251 (837)
Q Consensus 181 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~l~~~~--~~-~~~~s~iivTtR~~~---- 251 (837)
..|++++.............+..+.... ..++++++|||+++.-..-+.+...+ +. ......||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999999654222222233444444443 24678999999998653211111111 11 111223333343321
Q ss_pred -----HhhhCCcceEEeccCCHHhHHHHHHHHh
Q 038611 252 -----VCRSMKCKQVEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 252 -----v~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 279 (837)
+...++...+.+.+.+.++-.+++...+
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1234443448999999999999998765
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=1.9e-08 Score=107.09 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=80.5
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCC-------Cc----------
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA-------IE---------- 528 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-------i~---------- 528 (837)
.+++.+.+.. .+..++...|.+|++|+.+.+..| .+..++...|.++..+..+.+.... +.
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 4566677766 667777777777777777777766 4445555555555444444433310 00
Q ss_pred ----------ccChh---------------------------h-hcccccceecccCccccCCCc--cccccCCCCEEec
Q 038611 529 ----------VLPNS---------------------------V-SDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDL 568 (837)
Q Consensus 529 ----------~lp~~---------------------------i-~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l 568 (837)
.+|.. + ..+++|+.|+|++| .++.+| .+.++.+|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC
Confidence 00000 0 02456666666653 355555 3666666666666
Q ss_pred cCCcCcccccc-ccCCCCCC-EEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 569 RGTSIEEVPEG-MQMLENLS-HLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 569 ~~~~i~~lp~~-~~~l~~L~-~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
.++ +..++.. +.++++|+ .+++.. .++.++.+.|.++++|+.+++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 655 5555543 45666666 666655 555565555666666666665
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=2.4e-08 Score=106.25 Aligned_cols=185 Identities=12% Similarity=0.133 Sum_probs=111.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
..++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ..-...+.+..++......+. ..+..+
T Consensus 25 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQ--EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEF 100 (327)
T ss_dssp TTCCSC--HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTH-HHHHHH
T ss_pred HHhhCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHH-HHHHHH
Confidence 478998 6788888888887777779999999999999999999875211 100113344433321111111 111110
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChhH-hhh--CCcceEE
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYRV-CRS--MKCKQVE 262 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~v-~~~--~~~~~~~ 262 (837)
... ..+..+++.++|+||++... .+..+...+.....++++|+||....- ... ..+..+.
T Consensus 101 ~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 101 ART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred Hhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 000 00112568899999998642 233332222222456788888876432 111 1122489
Q ss_pred eccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHHh
Q 038611 263 VELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAAS 314 (837)
Q Consensus 263 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 314 (837)
+.+++.++...++...+......- -.+....|++.++|.|..+..+...
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999988764432111 3467788999999999876655443
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=3.7e-08 Score=105.69 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=44.0
Q ss_pred EecCC-CCcccChhhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCC
Q 038611 521 NLSFT-AIEVLPNSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPL 596 (837)
Q Consensus 521 ~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l 596 (837)
+++++ .+..+|. +..+.+|++|+|++++.++.+| .+.+|++|++|+|++|.+..+|+ .+.+|++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4444444 4444444444444323333333 24455555555555555554443 235555555555555555
Q ss_pred CCCCCCcccCCccCcEEEc
Q 038611 597 KELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 597 ~~~p~~~l~~l~~L~~L~l 615 (837)
..+|.+.+..++ |+.|++
T Consensus 93 ~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp SCCCSTTTCSCC-CCEEEC
T ss_pred ceeCHHHcccCC-ceEEEe
Confidence 555544343333 555555
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=3.2e-07 Score=97.01 Aligned_cols=181 Identities=10% Similarity=0.166 Sum_probs=109.6
Q ss_pred CccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCcCHHHHHHHHHH
Q 038611 107 TETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
...++|+ +..++.+..++..+..+.+.|+|++|+|||++|+.+++.... ..+. ..+.++.+.......+.
T Consensus 16 ~~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~----- 86 (319)
T 2chq_A 16 LDEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVR----- 86 (319)
T ss_dssp GGGSCSC--HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT--TCHHHHCEEEETTSTTCTTTSS-----
T ss_pred HHHHhCC--HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC--CcccCCeEEEeCccccChHHHH-----
Confidence 3478998 677888888888776666999999999999999999987521 1111 12334443321111100
Q ss_pred HhcCCCCCCccHHHHHHHHHHH--HhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChh-Hhh--hCCc
Q 038611 186 ALKESLPENEDKVSRAGRLLGM--LKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYR-VCR--SMKC 258 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~-v~~--~~~~ 258 (837)
......... +..+++-++|+|+++... ....+...+.....++.+|+||.... +.. ...+
T Consensus 87 -------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 87 -------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp -------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred -------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 000111000 112568899999997642 23333333333345677888876643 111 1122
Q ss_pred ceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 259 KQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 259 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
..+.+.+++.++...++...+......- -.+....|++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3489999999999999988765432222 34567888899999987655443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=2.1e-07 Score=101.36 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=79.0
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceeccc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQ 546 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 546 (837)
++.+.+.. .+..++...|.+| +|+.+.+..+ +..++...|.++ .|+.+.+.. .+..++ ..+.++.+|+.+++.
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 44444332 3445555555554 4666665443 555555555553 466666554 344443 345555666666665
Q ss_pred CccccCCCc-cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhh
Q 038611 547 RCRRLKRVP-SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEE 624 (837)
Q Consensus 547 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 624 (837)
+ +.++.+| ......+|+.+.+..+ +..++. .+.++++|+.+.+..+ ++.++...|.+ ++|+.+.+... ....
T Consensus 189 ~-n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I 262 (401)
T 4fdw_A 189 K-TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNI 262 (401)
T ss_dssp T-SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEE
T ss_pred C-CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEE
Confidence 4 2445555 2222455666655532 444443 3455556666665542 44455444444 45555555111 1111
Q ss_pred hHHHHhhhhhccCeeEEeec
Q 038611 625 TVEETGRLSDRLDTFEGHFS 644 (837)
Q Consensus 625 ~~~~l~~l~~~L~~L~l~~~ 644 (837)
....+..+ .+|+.+.+..+
T Consensus 263 ~~~aF~~c-~~L~~l~l~~~ 281 (401)
T 4fdw_A 263 ASRAFYYC-PELAEVTTYGS 281 (401)
T ss_dssp CTTTTTTC-TTCCEEEEESS
T ss_pred ChhHhhCC-CCCCEEEeCCc
Confidence 12234444 55555555443
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=9.4e-08 Score=102.53 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=69.5
Q ss_pred EEEcccc-CCCCCCCCCCCCCCcccEEEccC-CcCccccChhHhhcCCCCcEEEecCCCCcccCh-hhhcccccceeccc
Q 038611 470 RVSLMMN-DIDEIPSNMSPHCEILSTLLLQR-NINLQWIPECFFAHMHGLKILNLSFTAIEVLPN-SVSDLMNLISLLLQ 546 (837)
Q Consensus 470 ~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~ 546 (837)
.++..++ .+..+|. +..+++|+.|+|++ | .+..+++..|.++++|++|+|++|.+..+|. .+.+|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 6777776 56777788888875 5 6777777667778888888888887776653 56777777777777
Q ss_pred CccccCCCc-cccccCCCCEEeccCCcCc
Q 038611 547 RCRRLKRVP-SVAKLLALQHLDLRGTSIE 574 (837)
Q Consensus 547 ~~~~l~~lp-~~~~l~~L~~L~l~~~~i~ 574 (837)
+| .++.+| .+.....|++|+|.+|.+.
T Consensus 89 ~N-~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence 74 455666 3333233777777777654
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=108.39 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=76.9
Q ss_pred ccccEEEccccCCCCCCC-----CCCCCCCcccEEEccCCcCcccc-ChhHhhcCCCCcEEEecCCCCcccC-hhh----
Q 038611 466 ANLERVSLMMNDIDEIPS-----NMSPHCEILSTLLLQRNINLQWI-PECFFAHMHGLKILNLSFTAIEVLP-NSV---- 534 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~lp-~~i---- 534 (837)
..++.+++.+|.+..... .....+++|+.|++++| .+... ...+...+++|++|+|++|.+.... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777777776553211 11112356666666666 23221 1222334456666666666654321 111
Q ss_pred -hcccccceecccCccccCC-----Cc-cccccCCCCEEeccCCcCcc-----ccccccCCCCCCEEeccCCCCCCCCC-
Q 038611 535 -SDLMNLISLLLQRCRRLKR-----VP-SVAKLLALQHLDLRGTSIEE-----VPEGMQMLENLSHLYLYSPPLKELPA- 601 (837)
Q Consensus 535 -~~l~~L~~L~L~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~~p~- 601 (837)
...++|++|+|++|. ++. ++ .+..+++|++|+|++|.+.. ++..+...++|++|++++|.+.....
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 123556666666643 222 22 23455566666666665442 23444455566666666665543211
Q ss_pred ---CcccCCccCcEEEccccchhhhhhHHHHh
Q 038611 602 ---GLLPRLRKLCRLSLYFGWEALEETVEETG 630 (837)
Q Consensus 602 ---~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 630 (837)
..+...++|++|++ .++.........+.
T Consensus 230 ~l~~~L~~~~~L~~L~L-s~N~i~~~g~~~L~ 260 (372)
T 3un9_A 230 ALARAAREHPSLELLHL-YFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHCSSCCEEEC-TTSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEec-cCCCCCHHHHHHHH
Confidence 01233455555555 33334444443333
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=7.4e-09 Score=111.67 Aligned_cols=154 Identities=20% Similarity=0.188 Sum_probs=93.9
Q ss_pred CcccEEEccCCcCccccChhHhh-----cCCCCcEEEecCCCCcc--cChhhhcccccceecccCccccCCCc--cc---
Q 038611 490 EILSTLLLQRNINLQWIPECFFA-----HMHGLKILNLSFTAIEV--LPNSVSDLMNLISLLLQRCRRLKRVP--SV--- 557 (837)
Q Consensus 490 ~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp--~~--- 557 (837)
++|+.|++++| .+.......+. ..+.|++|+|++|.+.. +..-...+.+|++|+|++|. ++..+ .+
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 56778888877 34433222222 22678888888887653 12222345678888888763 43322 22
Q ss_pred --cccCCCCEEeccCCcCcc-----ccccccCCCCCCEEeccCCCCCCC-----CCCcccCCccCcEEEccccchhhhhh
Q 038611 558 --AKLLALQHLDLRGTSIEE-----VPEGMQMLENLSHLYLYSPPLKEL-----PAGLLPRLRKLCRLSLYFGWEALEET 625 (837)
Q Consensus 558 --~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~~-----p~~~l~~l~~L~~L~l~~~~~~~~~~ 625 (837)
...++|++|+|++|.+.. ++..+..+++|++|++++|.+... +.. +...++|++|++ ..+......
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~L-s~N~i~~~g 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNV-AYNGAGDTA 227 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEEC-CSSCCCHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEEC-CCCCCCHHH
Confidence 235678888888887653 455556777888888888876542 222 556677888888 444444433
Q ss_pred H----HHHhhhhhccCeeEEeeccccc
Q 038611 626 V----EETGRLSDRLDTFEGHFSKLNN 648 (837)
Q Consensus 626 ~----~~l~~l~~~L~~L~l~~~~~~~ 648 (837)
. ..+... ++|+.|++++|.+..
T Consensus 228 ~~~l~~~L~~~-~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARAAREH-PSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHC-SSCCEEECTTSSCCH
T ss_pred HHHHHHHHHhC-CCCCEEeccCCCCCH
Confidence 3 334455 778888888777654
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.47 E-value=7.2e-07 Score=96.60 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=105.7
Q ss_pred ccccccchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|+ +..++.+...+..+. .+.+.|+|++|+||||+|+.+++..... ..+. ...+... .....+...
T Consensus 16 ~~~vg~--~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~---~~~~~~~----~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT---ATPCGVC----DNCREIEQG 85 (373)
T ss_dssp TTSCSC--HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT-TCSC---SSCCSSS----HHHHHHHTS
T ss_pred hhccCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCC---CCCCccc----HHHHHHhcc
Confidence 368999 667788888886654 4678999999999999999999876211 1100 0000000 001111100
Q ss_pred hc-----CCCCCCccHHHHHHHHHHHHh----cCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChh-Hhh
Q 038611 187 LK-----ESLPENEDKVSRAGRLLGMLK----AKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYR-VCR 254 (837)
Q Consensus 187 l~-----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~-v~~ 254 (837)
-. ..... .........+...+. .+++.+||+||++... ..+.+...+.....+..+|++|.... +..
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 86 RFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp CCSSCEEEETTC-SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred CCCceEEecccc-cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 00000 000011122222221 3467899999997542 23333222222234567777776543 111
Q ss_pred --hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 255 --SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 255 --~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
...+..+.+.+++.++...++...+......- -.+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 11233489999999999999987653221111 24567889999999998877654
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=4.5e-07 Score=87.82 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=85.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCcCHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
..++|| ++.++.+.+.+.....+.+.|+|++|+|||++|+.+++....... ....++++.++. +.
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 22 DPVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccc--hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 468999 778899999998877788999999999999999999988632110 123344543321 10
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHH-hcCCeEEEEEeCCCCCc---------cccccccCCCCCCCCcEEEEEeCChhHh
Q 038611 184 ATALKESLPENEDKVSRAGRLLGML-KAKAKFVLILDDMWEAF---------PLEKVGIPEPNKENGCKLVITTRSYRVC 253 (837)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~s~iivTtR~~~v~ 253 (837)
. ...........+..+...+ ..+++.+|||||++... .+..+...+.. ..+..+|+||......
T Consensus 91 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 ----A-GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYR 164 (195)
T ss_dssp ----T-TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHH
T ss_pred ----c-cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHH
Confidence 0 0000111122223333333 24568899999997531 11111111111 2344577777665422
Q ss_pred hhC--------CcceEEeccCCHHhHHHHH
Q 038611 254 RSM--------KCKQVEVELLSKEEAFNLF 275 (837)
Q Consensus 254 ~~~--------~~~~~~l~~L~~~~~~~Lf 275 (837)
... ....+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 111 1223788888888776543
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=1.8e-06 Score=92.60 Aligned_cols=192 Identities=10% Similarity=0.138 Sum_probs=109.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKE-TNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|+ ++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..++.++......+.. ....
T Consensus 37 ~~i~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 112 (353)
T 1sxj_D 37 DEVTAQ--DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVRE-KVKN 112 (353)
T ss_dssp TTCCSC--CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTT-HHHH
T ss_pred HHhhCC--HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHH-HHHH
Confidence 378998 5577888888887765559999999999999999999876311 1111 234444444333333222 2222
Q ss_pred hc-CCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChh-Hhhh--CCcce
Q 038611 187 LK-ESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYR-VCRS--MKCKQ 260 (837)
Q Consensus 187 l~-~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~--~~~~~ 260 (837)
+. .......... ......+++-+|++|+++... ....+...+.......++|++|.... +... ..+..
T Consensus 113 ~~~~~~~~~~~~~------~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 113 FARLTVSKPSKHD------LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHSCCCCCCTTH------HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred Hhhhcccccchhh------cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 11 1111000000 001112356799999987542 12222221211233456777765433 1111 11224
Q ss_pred EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 261 VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+.+.+++.++....+...+......- -.+....|++.++|.|..+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 88999999999999988764432222 35678899999999998755543
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=1.9e-07 Score=94.24 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=103.1
Q ss_pred ccccccc-hhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEK-TKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~-~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|.+ .+..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|+++++..+. +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS------C---
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH------H---
Confidence 3677732 24566777777766667899999999999999999999886322 334677766442110 0
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc----ccccccCCCC-CCCC-cEEEEEeCChh---------
Q 038611 187 LKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP----LEKVGIPEPN-KENG-CKLVITTRSYR--------- 251 (837)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~-s~iivTtR~~~--------- 251 (837)
. ...+.+ .++-+||+||++.... ...+...+.. ...+ .++|+||+...
T Consensus 96 --------~-------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 96 --------T-------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp --------G-------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred --------H-------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0 000111 3467899999975421 1112111100 0112 24777776422
Q ss_pred HhhhCCc-ceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHHH
Q 038611 252 VCRSMKC-KQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVAA 313 (837)
Q Consensus 252 v~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 313 (837)
+...... ..+.+.+++.++..+++...+......- -.+....|++.++|.+-.+..+..
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHHH
Confidence 1222211 2389999999999999988764321122 356778889999998876655433
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.31 E-value=3e-06 Score=93.29 Aligned_cols=183 Identities=15% Similarity=0.170 Sum_probs=106.2
Q ss_pred ccc-ccchhHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 109 TLV-GEKTKKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 109 ~~v-Gr~~~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.++ |.........+........ ...+.|+|++|+||||||+.+++..... ..-..+++++.. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHH------HHHHHHHHH
Confidence 455 7544444555555555443 6789999999999999999999986332 112235566543 234444444
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc----ccccccCCCC-CCCCcEEEEEeCCh---------hH
Q 038611 187 LKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP----LEKVGIPEPN-KENGCKLVITTRSY---------RV 252 (837)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~s~iivTtR~~---------~v 252 (837)
+... . ...+...+ ..++-+|+|||++.... .+.+...+.. ...|..||+||... .+
T Consensus 179 ~~~~-----~----~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 179 MKEG-----K----LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHTT-----C----HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHcc-----c----HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 4321 0 11222222 22577999999975432 1222211110 13467888888762 22
Q ss_pred hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 253 CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 253 ~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
...+.... +.+.+++.++...++.+.+......- -.+....|++.++|.+-.+.-+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i---~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHCCSCHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 23333223 88999999999999988763221111 1235677888899888655443
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.26 E-value=3e-06 Score=92.18 Aligned_cols=140 Identities=11% Similarity=0.253 Sum_probs=66.6
Q ss_pred ccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceeccc
Q 038611 468 LERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQ 546 (837)
Q Consensus 468 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 546 (837)
++.+.+.. .+..++...|.+|++|+.+.+..+ .+..++...|. +..|+.+.|..+ +..++ ..+.++.+|+.+.+.
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 44444443 445555555555555555555554 45555555544 355555555432 44443 334455555555554
Q ss_pred CccccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCC-----CCCCCcccCCccCcEEEc
Q 038611 547 RCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLK-----ELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 547 ~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~-----~~p~~~l~~l~~L~~L~l 615 (837)
. .++.++ .+.+ .+|+.+.+.. .+..++. .+.++++|+.+.+.++.+. .++...|.++++|+.+.+
T Consensus 235 ~--~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 235 E--NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp T--TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred C--CccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 3 234444 2333 4455555522 2334432 3345555555555443332 344444555555555555
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=9.9e-06 Score=83.90 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=100.1
Q ss_pred CCccccccchhHHHHHHHHHhcC-------------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 106 PTETLVGEKTKKVVEIIWENLMG-------------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
....++|. +..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++.. .. ..+.+..+.
T Consensus 15 ~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~ 86 (285)
T 3h4m_A 15 RYEDIGGL--EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSE 86 (285)
T ss_dssp CGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGG
T ss_pred CHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHH
Confidence 34578998 5566666665532 346789999999999999999999875 11 233343322
Q ss_pred CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc------------c----ccccccCCC-
Q 038611 173 PLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF------------P----LEKVGIPEP- 235 (837)
Q Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~- 235 (837)
-.+ . ...........+.......++.+|+|||++... . +..+...+.
T Consensus 87 ~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 87 LVK--------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp GCC--------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred HHH--------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 111 0 011122233344444445677899999996420 0 111111110
Q ss_pred -CCCCCcEEEEEeCChhHh-----hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCC-chhH
Q 038611 236 -NKENGCKLVITTRSYRVC-----RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGC-LPLA 307 (837)
Q Consensus 236 -~~~~~s~iivTtR~~~v~-----~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLa 307 (837)
....+..||.||...... ....... +.+.+.+.++..+++...+........ .....+++.+.| .|-.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED----VNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT----CCHHHHHHHCTTCCHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc----CCHHHHHHHcCCCCHHH
Confidence 123456777788764331 1112333 889999999999999888754422111 114567777777 3434
Q ss_pred HHH
Q 038611 308 IVT 310 (837)
Q Consensus 308 i~~ 310 (837)
+..
T Consensus 227 i~~ 229 (285)
T 3h4m_A 227 LKA 229 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=3.3e-05 Score=79.25 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=93.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 038611 128 GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGM 207 (837)
Q Consensus 128 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 207 (837)
....+.+.|+|++|+|||++|+.+++.. . .. .+.+..++.. .+. ...........+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~--~~-~~~i~~~~~~------------~g~---~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---N--FP-FIKICSPDKM------------IGF---SETAKCQAMKKIFDD 119 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---T--CS-EEEEECGGGC------------TTC---CHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---C--CC-EEEEeCHHHh------------cCC---chHHHHHHHHHHHHH
Confidence 3456789999999999999999999874 1 12 2233322210 000 001111222333333
Q ss_pred HhcCCeEEEEEeCCCCC-----------cc-ccccccCCC---CCCCCcEEEEEeCChhHhhh---CCc-ce-EEeccCC
Q 038611 208 LKAKAKFVLILDDMWEA-----------FP-LEKVGIPEP---NKENGCKLVITTRSYRVCRS---MKC-KQ-VEVELLS 267 (837)
Q Consensus 208 l~~~k~~LlVlDdv~~~-----------~~-~~~l~~~~~---~~~~~s~iivTtR~~~v~~~---~~~-~~-~~l~~L~ 267 (837)
....++.+|+|||++.. .. +..+...+. .......||.||........ ... .. +.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 33467899999998642 00 111111111 12233456777877654322 111 23 8889998
Q ss_pred H-HhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCC------chhHHHHHHHhccCCcCHHHHHHHHHHHHh
Q 038611 268 K-EEAFNLFIDRVGSSILQVPTLNREIINSIVEECGC------LPLAIVTVAASMSGEEEIYEWQNALNELRG 333 (837)
Q Consensus 268 ~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G------lPLai~~~~~~l~~~~~~~~w~~~l~~l~~ 333 (837)
. ++...++.+.... ..+....|++.+.| +.-++..+-.+.. ......+..+++.+..
T Consensus 200 ~r~~i~~i~~~~~~~--------~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 200 TGEQLLEALELLGNF--------KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLRE 263 (272)
T ss_dssp EHHHHHHHHHHHTCS--------CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--------CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHHH
Confidence 8 6666666553211 24457788888888 3444444433322 2234556666665544
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.22 E-value=1.4e-05 Score=87.73 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=102.2
Q ss_pred ccccccchhHHH---HHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-cCHHHHHHHH
Q 038611 108 ETLVGEKTKKVV---EIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEI 183 (837)
Q Consensus 108 ~~~vGr~~~~~~---~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i 183 (837)
..++|. +..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ... ++.++.. .....+ +.+
T Consensus 26 ~~ivGq--~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 26 AQYIGQ--QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTSGVKEI-REA 94 (447)
T ss_dssp TTCCSC--HHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTCCHHHH-HHH
T ss_pred HHhCCc--HHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccCCHHHH-HHH
Confidence 378998 4455 567777777778899999999999999999999875 111 2222221 122221 111
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEE-EeCChhH----hhhC
Q 038611 184 ATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVI-TTRSYRV----CRSM 256 (837)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iiv-TtR~~~v----~~~~ 256 (837)
+. ........+++.+|+||+++.. ...+.+...+.. ....+|. ||.+... +-..
T Consensus 95 ~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 IE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT
T ss_pred HH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC
Confidence 11 1111112467899999999864 223333322222 2233443 5555431 1111
Q ss_pred CcceEEeccCCHHhHHHHHHHHhCCCC----CCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 257 KCKQVEVELLSKEEAFNLFIDRVGSSI----LQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 257 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
.+..+.+.+++.++...++.+.+.... ......-.+....|++.++|.+-.+..+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 223388999999999999988764410 01111245678888899999887655443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=4.3e-06 Score=94.25 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=102.2
Q ss_pred ccccccchhHHHHHHHHHhcC-----------------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 108 ETLVGEKTKKVVEIIWENLMG-----------------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
.+++|+ +..++.+.+++.. +..+.+.|+|++|+||||+|+.+++.. . ..++.+++
T Consensus 39 ~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~-~~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----G-YDILEQNA 110 (516)
T ss_dssp GGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----T-CEEEEECT
T ss_pred HHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----C-CCEEEEeC
Confidence 378998 6678888888754 134799999999999999999999875 1 23455555
Q ss_pred CCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-----ccccccCCCCCCCCcEEEE
Q 038611 171 SQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-----LEKVGIPEPNKENGCKLVI 245 (837)
Q Consensus 171 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~~s~iiv 245 (837)
++......+ ...+........ .......... .....+++.+||||+++.... +..+...+. ..+..||+
T Consensus 111 s~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKTLL-NAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLIL 184 (516)
T ss_dssp TSCCCHHHH-HHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEE
T ss_pred CCcchHHHH-HHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEE
Confidence 554443322 222221111000 0000000000 000135788999999975421 122211111 12234555
Q ss_pred EeCChh---HhhhCC-cceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch-hHHHHH
Q 038611 246 TTRSYR---VCRSMK-CKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP-LAIVTV 311 (837)
Q Consensus 246 TtR~~~---v~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~ 311 (837)
++.... +..... +..+.+.+++.++..+.+...+......- -.+....|++.++|.+ -++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i---~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL---DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 544422 222222 22389999999999998877653321111 1235778899999955 445444
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.19 E-value=0.0001 Score=78.25 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=97.3
Q ss_pred CccccccchhHHHHHHHHHhc-----CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHH
Q 038611 107 TETLVGEKTKKVVEIIWENLM-----GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 181 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~ 181 (837)
...++|+ +..++.+..++. ......|.|+|++|+|||++|+.+++.. ... .+.++++.......
T Consensus 28 ~~~iiG~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~~--- 96 (338)
T 3pfi_A 28 FDGYIGQ--ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSGD--- 96 (338)
T ss_dssp GGGCCSC--HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHHH---
T ss_pred HHHhCCh--HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchhH---
Confidence 3478998 556666666654 2445678999999999999999998764 222 23343322211111
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc--ccccccCC------------------CCCCCCc
Q 038611 182 EIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP--LEKVGIPE------------------PNKENGC 241 (837)
Q Consensus 182 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~------------------~~~~~~s 241 (837)
....... ..+..+|+||+++.... ...+...+ ....+..
T Consensus 97 -------------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 97 -------------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -------------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -------------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111111 23567888999875421 11110000 0001134
Q ss_pred EEEEEeCChhH-----hhhCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 242 KLVITTRSYRV-----CRSMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 242 ~iivTtR~~~v-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
.+|.||..... .... ...+.+.+++.++...++...+......- -.+....|++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHH
Confidence 56666655332 2221 12389999999999999987764331111 35567888889999996555443
No 176
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=1.7e-05 Score=86.29 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCc--------
Q 038611 478 IDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRC-------- 548 (837)
Q Consensus 478 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~-------- 548 (837)
++.++...|.+|.+|+.+.+.. .+..|+...|.++.+|+.+++..+ +..++ ..+..+.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence 3445555666677777777653 356666666677777777776543 44443 23445555555544321
Q ss_pred ------------cccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEE
Q 038611 549 ------------RRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRL 613 (837)
Q Consensus 549 ------------~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L 613 (837)
..+..++ .+.++.+|+.+.+..+ +..++. .+.++++|+.+.+..+ ++.++...+.+++.|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 0111122 2455566666666543 233333 2455566666665443 444544445555566555
Q ss_pred Ec
Q 038611 614 SL 615 (837)
Q Consensus 614 ~l 615 (837)
.+
T Consensus 214 ~~ 215 (394)
T 4fs7_A 214 EF 215 (394)
T ss_dssp CC
T ss_pred ec
Confidence 54
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.17 E-value=8.4e-05 Score=78.05 Aligned_cols=179 Identities=12% Similarity=0.147 Sum_probs=100.7
Q ss_pred CCccccccchhHHHHHHHHHhc----------C--CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 106 PTETLVGEKTKKVVEIIWENLM----------G--DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~----------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
....++|. +..++.|.+.+. . ...+.|.|+|++|+|||+||+.+++.. . . ...+.++.+.-
T Consensus 10 ~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~---~~~~~i~~~~l 82 (322)
T 1xwi_A 10 KWSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-N---STFFSISSSDL 82 (322)
T ss_dssp CGGGSCSC--HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-S---CEEEEEECCSS
T ss_pred CHHHhcCH--HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-C---CcEEEEEhHHH
Confidence 34478887 445555554431 1 134789999999999999999999874 1 1 12344444322
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-------------ccccccC---CCCC
Q 038611 174 LDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-------------LEKVGIP---EPNK 237 (837)
Q Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---~~~~ 237 (837)
.+ ... ......+..+.......++.+|+||+++.... ...+... +...
T Consensus 83 ~~--------------~~~--g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 83 VS--------------KWL--GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp CC--------------SSC--CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred Hh--------------hhh--hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 11 100 11123334444444456789999999975310 0011111 1111
Q ss_pred CCCcEEEEEeCChhH-----hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHHH
Q 038611 238 ENGCKLVITTRSYRV-----CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIVT 310 (837)
Q Consensus 238 ~~~s~iivTtR~~~v-----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~ 310 (837)
..+..||.||..... .. .... +.+...+.++-..++...+......- -......|++.+.|..- .|..
T Consensus 147 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~ 221 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISI 221 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHH
Confidence 334455556654322 22 2333 78888999999999988775442221 23457788899988743 3554
Q ss_pred HH
Q 038611 311 VA 312 (837)
Q Consensus 311 ~~ 312 (837)
+.
T Consensus 222 l~ 223 (322)
T 1xwi_A 222 IV 223 (322)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.17 E-value=5.2e-05 Score=81.01 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=101.3
Q ss_pred CccccccchhHHHHHHHHHhc------------CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 107 TETLVGEKTKKVVEIIWENLM------------GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
...++|. +..++.|.+.+. ....+.|.|+|++|+|||++|+.+++.. . ...+.++++.-.
T Consensus 83 ~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~---~~~~~i~~~~l~ 154 (357)
T 3d8b_A 83 WEDIAGV--EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---G---ATFFSISASSLT 154 (357)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---T---CEEEEEEGGGGC
T ss_pred HHHhCCh--HHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---C---CeEEEEehHHhh
Confidence 3478898 556666665552 2346789999999999999999998864 1 123455544321
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc-------------cccccccCCC----CC
Q 038611 175 DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF-------------PLEKVGIPEP----NK 237 (837)
Q Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~~~~l~~~~~----~~ 237 (837)
+ .. ..........+.......++.+|+||+++... ....+...+. ..
T Consensus 155 ~--------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 155 S--------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp C--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred c--------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 1 00 01112223333333334668999999995320 0111111111 11
Q ss_pred CCCcEEEEEeCChhH---hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCC-chhHHHHHH
Q 038611 238 ENGCKLVITTRSYRV---CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGC-LPLAIVTVA 312 (837)
Q Consensus 238 ~~~s~iivTtR~~~v---~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 312 (837)
..+..||.||..... +-...... +.+...+.++...++...+......- ..+....|++.+.| .+-.+..+.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 234456666755322 11112233 78888999999998887764432111 24567888999988 444555543
Q ss_pred H
Q 038611 313 A 313 (837)
Q Consensus 313 ~ 313 (837)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=5.7e-06 Score=88.23 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=84.5
Q ss_pred ccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccccchhhhhhHHHHh--hhhhccCeeEEeeccccchhhhh
Q 038611 576 VPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYFGWEALEETVEETG--RLSDRLDTFEGHFSKLNNFNIYV 653 (837)
Q Consensus 576 lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~~L~~L~l~~~~~~~~~~~~ 653 (837)
++.-+..+++|+.|.+++|.-..++. +. +++|++|.+ .++......+..+. .+ ++|+.|+++.+.... .
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L-~~~~l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~----~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEI-ISGGLPDSVVEDILGSDL-PNLEKLVLYVGVEDY----G 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEE-ECSBCCHHHHHHHHHSBC-TTCCEEEEECBCGGG----T
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEE-ecCCCChHHHHHHHHccC-CCCcEEEEecccccc----c
Confidence 33445566777777777663223333 22 678888888 44555555666665 57 889998886431000 0
Q ss_pred hcccCCccceEEEEeccCcCCCCccccceeeeccchhhhhccCCCCcccCCCCCcEEEEeeecchhhhhhcccccccccc
Q 038611 654 KSSDGRESEKYCLMLSPDYVGDSVIADLEVDRSVCLIANKICEKEKPIVLPEDVQCLEMFEVYDIASLNDVLPREQGLVN 733 (837)
Q Consensus 654 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~L~~L~~ 733 (837)
.......+. .+.. ...+++|+.|.+.+|......+..+ ..
T Consensus 235 ~~~~~~~l~------------------------------~~l~----~~~~p~Lr~L~L~~~~i~~~~~~~l------a~ 274 (362)
T 2ra8_A 235 FDGDMNVFR------------------------------PLFS----KDRFPNLKWLGIVDAEEQNVVVEMF------LE 274 (362)
T ss_dssp CCSCGGGTG------------------------------GGSC----TTTCTTCCEEEEESCTTHHHHHHHH------HH
T ss_pred cchhHHHHH------------------------------HHHh----cCCCCCcCEEeCCCCCCchHHHHHH------Hh
Confidence 000000000 0000 0125899999998887433222111 11
Q ss_pred cccccccccEEEEecCCCCCcchh---hhhhhhcCCccEEEecccc
Q 038611 734 IGKFSHDLKVLRFYYCNNLKNLFS---LRLLPALKNLECLEVCGCD 776 (837)
Q Consensus 734 ~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~~L~l~~c~ 776 (837)
...++ +|++|+|+.| .+.+... ...++.+++|+.|++++|.
T Consensus 275 a~~~~-~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 275 SDILP-QLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSSGG-GCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CccCC-CCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 22466 9999999764 5666321 1134678999999999884
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1e-05 Score=86.80 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=101.9
Q ss_pred ccccccchhHHHHHHHHHh-cCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc-CC--CC--------------------
Q 038611 108 ETLVGEKTKKVVEIIWENL-MGDKAPKIGVWGMGGIGKTTIMKEINNRLQKET-NK--FN-------------------- 163 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~--f~-------------------- 163 (837)
..++|+ +..++.+..++ ..+..+.+.|+|+.|+||||+|+.+++...... +. ++
T Consensus 14 ~~~vg~--~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHN--EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSC--HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCC--HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 478898 66778888888 666555599999999999999999988541110 00 00
Q ss_pred eEEEEEeCCCc-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc--ccccccCCCCCCCC
Q 038611 164 VVIWVTVSQPL-DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP--LEKVGIPEPNKENG 240 (837)
Q Consensus 164 ~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~~ 240 (837)
..+.+..+... ......++++..+.....-. .. . .+ ..+ .+++-++|||++..-.. ...+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~-~l-s~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-FQ---D-SK-DGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccc-cc---c-cc-ccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 01111111100 00001222233222111000 00 0 00 001 23677999999986321 12222111111235
Q ss_pred cEEEEEeCChh-Hhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhh-HHHHHHHHHHhCCchhHHHHHH
Q 038611 241 CKLVITTRSYR-VCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLN-REIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 241 s~iivTtR~~~-v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~-~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+.+|++|.... +.. ...+..+++.+++.++....+...+......- - .+.+..|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL---ETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE---CCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC---CcHHHHHHHHHHcCCCHHHHHHHH
Confidence 67777776532 211 11233499999999999999987663221111 1 3467888999999887665554
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.12 E-value=5.8e-05 Score=79.49 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=102.6
Q ss_pred CccccccchhHHHHHHHHHhc----------C--CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 107 TETLVGEKTKKVVEIIWENLM----------G--DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~----------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
...++|. +..++.|.+.+. . ...+-|.|+|++|+|||+||+++++.. .. ..+.++.+.
T Consensus 17 ~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~v~~~~-- 86 (322)
T 3eie_A 17 WEDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSSD-- 86 (322)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TC---EEEEEEHHH--
T ss_pred HHHhcCh--HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CC---CEEEEchHH--
Confidence 4478898 566666666551 1 124679999999999999999999875 11 123333211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-------------ccccccC---CCCCC
Q 038611 175 DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-------------LEKVGIP---EPNKE 238 (837)
Q Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~---~~~~~ 238 (837)
+ . ... .......+..+.......++.+|+||+++.... ...+... +....
T Consensus 87 ----l----~----~~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 ----L----V----SKW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ----H----H----TTT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ----H----h----hcc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1 1 110 112233344444444456778999999974311 1111111 11123
Q ss_pred CCcEEEEEeCChhH-----hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCc-hhHHHHH
Q 038611 239 NGCKLVITTRSYRV-----CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCL-PLAIVTV 311 (837)
Q Consensus 239 ~~s~iivTtR~~~v-----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 311 (837)
.+..||.||..... .. .... +.+...+.++-.+++...+....... -......|++.+.|. +-.|..+
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 45566667766432 22 2223 78888999999999998876542222 234567888888874 4344444
Q ss_pred H
Q 038611 312 A 312 (837)
Q Consensus 312 ~ 312 (837)
.
T Consensus 228 ~ 228 (322)
T 3eie_A 228 V 228 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.11 E-value=9.6e-05 Score=80.07 Aligned_cols=179 Identities=10% Similarity=0.101 Sum_probs=99.3
Q ss_pred CCccccccchhHHHHHHHHHhc------------CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 106 PTETLVGEKTKKVVEIIWENLM------------GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
....++|. +..++.|.+++. ....+-|.|+|++|+|||++|+.+++.. . ..++.++++.-
T Consensus 113 ~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~---~~~~~v~~~~l 184 (389)
T 3vfd_A 113 KFDDIAGQ--DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---N---ATFFNISAASL 184 (389)
T ss_dssp CGGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---T---CEEEEECSCCC
T ss_pred ChHHhCCH--HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---c---CcEEEeeHHHh
Confidence 34578998 566677766652 1234789999999999999999998764 1 12344443332
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--------c-----ccccccCC---C-C
Q 038611 174 LDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--------P-----LEKVGIPE---P-N 236 (837)
Q Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~-----~~~l~~~~---~-~ 236 (837)
.+. . . .........+........+.+|+||+++... . ...+...+ . .
T Consensus 185 ~~~--~-------~-------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 248 (389)
T 3vfd_A 185 TSK--Y-------V-------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA 248 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--
T ss_pred hcc--c-------c-------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc
Confidence 110 0 0 0011222333333334567899999996431 0 00111111 0 1
Q ss_pred CCCCcEEEEEeCChhH---hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHHHH
Q 038611 237 KENGCKLVITTRSYRV---CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIVTV 311 (837)
Q Consensus 237 ~~~~s~iivTtR~~~v---~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 311 (837)
......||.||..... +-...... +.+...+.++...++...+......- ..+....|++.+.|..- ++..+
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 1223455656655322 11112333 78888999999999988775542222 34567889999988654 45444
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.10 E-value=6.7e-05 Score=76.45 Aligned_cols=178 Identities=13% Similarity=0.155 Sum_probs=95.1
Q ss_pred ccccccchhHHHHHH---HHHhcC---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 108 ETLVGEKTKKVVEII---WENLMG---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l---~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
..++|.+ ..++.+ +.++.. ...+.+.|+|++|+|||++|+.+++.. .. ..+.+..+.-.+
T Consensus 6 ~~i~G~~--~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~---~~~~~~~~~~~~ 77 (262)
T 2qz4_A 6 KDVAGMH--EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QV---PFLAMAGAEFVE 77 (262)
T ss_dssp TSSCSCH--HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---CEEEEETTTTSS
T ss_pred HHhCCHH--HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEechHHHHh
Confidence 4678873 344444 333332 234678899999999999999999875 11 234454443211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc-------------c----ccccccCCC--C
Q 038611 176 LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF-------------P----LEKVGIPEP--N 236 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-------------~----~~~l~~~~~--~ 236 (837)
. . ..........+........+.+|+|||++... . +..+...+. .
T Consensus 78 ~--------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 V--------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp S--------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred h--------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 0 01112223334444444568999999997531 1 111111111 1
Q ss_pred CCCCcEEEEEeCChhHhh-h-C---Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHH
Q 038611 237 KENGCKLVITTRSYRVCR-S-M---KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIV 309 (837)
Q Consensus 237 ~~~~s~iivTtR~~~v~~-~-~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~ 309 (837)
...+..||.||....... . . .... +.+...+.++-.+++...+.......+ .......+++.+.|.+- .+.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHH
Confidence 123556677776644211 1 1 2223 788999999999998876643211111 22234778888888754 343
Q ss_pred HH
Q 038611 310 TV 311 (837)
Q Consensus 310 ~~ 311 (837)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=0.00032 Score=72.87 Aligned_cols=178 Identities=11% Similarity=0.123 Sum_probs=99.8
Q ss_pred CCccccccchhHHHHHHHHHhcC------------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 106 PTETLVGEKTKKVVEIIWENLMG------------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
....++|. +..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. . ...+.++.+.-
T Consensus 19 ~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~---~~~~~i~~~~l 90 (297)
T 3b9p_A 19 EWTDIAGQ--DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---S---ATFLNISAASL 90 (297)
T ss_dssp CGGGSCCC--HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---T---CEEEEEESTTT
T ss_pred CHHHhCCh--HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---C---CCeEEeeHHHH
Confidence 34578998 5566666665521 235789999999999999999999865 1 12344444332
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccc---------c----ccc---cCCCC-
Q 038611 174 LDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPL---------E----KVG---IPEPN- 236 (837)
Q Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~----~l~---~~~~~- 236 (837)
.+ .. ..........+.......++.+|+||+++....- . .+. ...+.
T Consensus 91 ~~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 91 TS--------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp SS--------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred hh--------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 11 00 1112223333344444567889999999653110 0 011 01111
Q ss_pred -CCCCcEEEEEeCChh-----HhhhCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchh-HHH
Q 038611 237 -KENGCKLVITTRSYR-----VCRSMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPL-AIV 309 (837)
Q Consensus 237 -~~~~s~iivTtR~~~-----v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~ 309 (837)
.+.+..||.||.... +..... ..+.+...+.++...++...+......- ..+....|++.+.|.+- ++.
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHH
Confidence 123455666777643 222222 1277777888888888877664331111 24567788899999876 444
Q ss_pred HH
Q 038611 310 TV 311 (837)
Q Consensus 310 ~~ 311 (837)
.+
T Consensus 231 ~l 232 (297)
T 3b9p_A 231 AL 232 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=1.5e-05 Score=84.14 Aligned_cols=174 Identities=11% Similarity=0.059 Sum_probs=99.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCC-CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKA-PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++|+ +..++.+..++..+.. +++.+.|++|+|||++|+.+++... ..++.++.+.. ....+ +.++..
T Consensus 26 ~~ivg~--~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~~i-~~~~~~ 95 (324)
T 3u61_B 26 DECILP--AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KIDFV-RGPLTN 95 (324)
T ss_dssp TTSCCC--HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHHHH-HTHHHH
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHHHH-HHHHHH
Confidence 378998 6678888888877654 6778888899999999999988751 22455554432 22222 222221
Q ss_pred hcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc---cccccccCCCCCCCCcEEEEEeCChhH-----hhhCCc
Q 038611 187 LKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF---PLEKVGIPEPNKENGCKLVITTRSYRV-----CRSMKC 258 (837)
Q Consensus 187 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~~s~iivTtR~~~v-----~~~~~~ 258 (837)
.....+ ..+++-+||+||++... ..+.+...+.....+..+|+||....- ...+
T Consensus 96 ~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~-- 157 (324)
T 3u61_B 96 FASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC-- 157 (324)
T ss_dssp HHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS--
T ss_pred HHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC--
Confidence 110000 02468899999998653 222222111111235678888776431 2222
Q ss_pred ceEEeccCCHHhHHHHH-------HHHhCCCCCCCchhhH-HHHHHHHHHhCCchhHHHHHH
Q 038611 259 KQVEVELLSKEEAFNLF-------IDRVGSSILQVPTLNR-EIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 259 ~~~~l~~L~~~~~~~Lf-------~~~~~~~~~~~~~~~~-~~~~~i~~~c~GlPLai~~~~ 312 (837)
..+.+.+++.++-.+++ ...+......- .. +....|++.++|.+-.+....
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI---ADMKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB---SCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC---CcHHHHHHHHHhCCCCHHHHHHHH
Confidence 23899999988743332 22222111111 12 567888899998776544433
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=3.5e-05 Score=81.95 Aligned_cols=180 Identities=12% Similarity=0.174 Sum_probs=101.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCcCHHHHHHHHHHHh
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIATAL 187 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l 187 (837)
.++|. +..++.+...+..++.+-+.++|+.|+||||+|+.+++.... ..+. .+..++.+.......+. +++..+
T Consensus 26 ~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~~ir-~~i~~~ 100 (340)
T 1sxj_C 26 EVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGIDVVR-NQIKDF 100 (340)
T ss_dssp GCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHHHHH-THHHHH
T ss_pred HhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHHHHH-HHHHHH
Confidence 67887 667788888888777655999999999999999999987621 1111 12223333222222221 111111
Q ss_pred cCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChh-Hhh--hCCcceEE
Q 038611 188 KESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYR-VCR--SMKCKQVE 262 (837)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~-v~~--~~~~~~~~ 262 (837)
..... ...+.+-++|+|+++... ..+.+...+......+.+|++|.... +.. ...+..+.
T Consensus 101 ~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 101 ASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 10000 002346788999987532 22222211111123456777665432 111 11233488
Q ss_pred eccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 263 VELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 263 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
+.+++.++....+...+......- -.+....|++.++|.+--+..+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999888887663321111 3456788899999988754433
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.04 E-value=1.9e-05 Score=85.22 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=100.8
Q ss_pred Cccccccch-hHHHHHHHHHhcCCCC--CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeC----CCcCHHHH
Q 038611 107 TETLVGEKT-KKVVEIIWENLMGDKA--PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS----QPLDLIKL 179 (837)
Q Consensus 107 ~~~~vGr~~-~~~~~~l~~~l~~~~~--~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs----~~~~~~~~ 179 (837)
...++|++. .+.+..+.+.+..+.. +.+.|+|++|+|||++|+.+++... ... ..+.+... ........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~-~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG---PDT-PFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC---SSC-CEEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc---ccC-CcccccchhhhhcccchhHH
Confidence 347999843 1224446666666544 5999999999999999999999862 111 12223321 12233333
Q ss_pred HHHHHHHh-cCC---------------------------CCC-----CccHHHHHHHHHHH-HhcCC----eEEEEEeCC
Q 038611 180 QTEIATAL-KES---------------------------LPE-----NEDKVSRAGRLLGM-LKAKA----KFVLILDDM 221 (837)
Q Consensus 180 ~~~i~~~l-~~~---------------------------~~~-----~~~~~~~~~~l~~~-l~~~k----~~LlVlDdv 221 (837)
..+..... +.. ... .............. ...++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 33333221 100 000 00111111111111 11244 359999999
Q ss_pred CCCc--cccccccCCCCCCCCcEEEEEeCC-----------------hhHhhhCCcceEEeccCCHHhHHHHHHHHhCCC
Q 038611 222 WEAF--PLEKVGIPEPNKENGCKLVITTRS-----------------YRVCRSMKCKQVEVELLSKEEAFNLFIDRVGSS 282 (837)
Q Consensus 222 ~~~~--~~~~l~~~~~~~~~~s~iivTtR~-----------------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 282 (837)
+... ....+...+.. .....++++|.. +.+..+ +..+.+.+++.++...++...+...
T Consensus 199 ~~l~~~~~~~L~~~le~-~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 199 HMLDIESFSFLNRALES-DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR--LLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GGSBHHHHHHHHHHTTC-TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT--EEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHhhC-cCCCeeeeecccceeeeeccCCCCcccCCHHHHhh--ccEEEecCCCHHHHHHHHHHHHHHc
Confidence 7642 12222222211 111234444431 122222 2228999999999999998776433
Q ss_pred CCCCchhhHHHHHHHHHHhC-CchhHHHHH
Q 038611 283 ILQVPTLNREIINSIVEECG-CLPLAIVTV 311 (837)
Q Consensus 283 ~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 311 (837)
...- -.+....|++.+. |.|-.+..+
T Consensus 276 ~~~~---~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVEM---SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCCB---CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHhcCCCHHHHHHH
Confidence 2222 3556788888887 777655444
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=2.2e-05 Score=82.98 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=98.6
Q ss_pred ccc-ccchhHHHHHHHHHhcCC--CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 109 TLV-GEKTKKVVEIIWENLMGD--KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 109 ~~v-Gr~~~~~~~~l~~~l~~~--~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.++ |.........+..++... ....+.|+|++|+||||||+.+++..... -..++++++. .+...+..
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~------~~~~~~~~ 82 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSAD------DFAQAMVE 82 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHH------HHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHH------HHHHHHHH
Confidence 454 654444455555555544 35789999999999999999999986322 2234566532 33334443
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc---c-cccccCCC-CCCCCcEEEEEeCChh---------
Q 038611 186 ALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP---L-EKVGIPEP-NKENGCKLVITTRSYR--------- 251 (837)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~l~~~~~-~~~~~s~iivTtR~~~--------- 251 (837)
.+... . .......+ .++-+|+|||++.... + ..+...+. ....+..||+||....
T Consensus 83 ~~~~~-----~----~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 83 HLKKG-----T----INEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHT-----C----HHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHcC-----c----HHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 33211 0 11122222 2367899999975431 1 12221111 0123557888776421
Q ss_pred HhhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 252 VCRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 252 v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
+........ +.+.+ +.++...++...+......- -.+....|++.+ |..-.
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHH
Confidence 222333323 89999 99999999988764321222 345677888888 76644
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=1e-05 Score=84.83 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
....+.|+|++|+|||++|+.+++..... ......-++.++.. .+..... .........+....
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~------------~l~~~~~--g~~~~~~~~~~~~~- 129 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVTRD------------DLVGQYI--GHTAPKTKEVLKRA- 129 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEECGG------------GTCCSST--TCHHHHHHHHHHHH-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEcHH------------Hhhhhcc--cccHHHHHHHHHhc-
Confidence 45679999999999999999999886322 22111123333211 0111110 11122222233222
Q ss_pred cCCeEEEEEeCCCCC-----------ccccccccCCCCCCCCcEEEEEeCChhH----------hhhCCcceEEeccCCH
Q 038611 210 AKAKFVLILDDMWEA-----------FPLEKVGIPEPNKENGCKLVITTRSYRV----------CRSMKCKQVEVELLSK 268 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~s~iivTtR~~~v----------~~~~~~~~~~l~~L~~ 268 (837)
+.-+|+||+++.. .....+...+.....+..||.||..... ...+. ..+.+.+++.
T Consensus 130 --~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~ 206 (309)
T 3syl_A 130 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSD 206 (309)
T ss_dssp --TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCH
T ss_pred --CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCH
Confidence 3459999999733 1112222222222345677888765322 22211 2289999999
Q ss_pred HhHHHHHHHHhC
Q 038611 269 EEAFNLFIDRVG 280 (837)
Q Consensus 269 ~~~~~Lf~~~~~ 280 (837)
++...++...+.
T Consensus 207 ~~~~~il~~~l~ 218 (309)
T 3syl_A 207 EELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.00 E-value=8e-05 Score=79.44 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=99.1
Q ss_pred CCccccccchhHHHHHHHHHhc----------C--CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 106 PTETLVGEKTKKVVEIIWENLM----------G--DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 106 ~~~~~vGr~~~~~~~~l~~~l~----------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
....++|. +..++.|.+.+. . ...+-|.|+|++|+|||+||+.+++.. .. ..+.++.+
T Consensus 49 ~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~-- 118 (355)
T 2qp9_X 49 KWEDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS-- 118 (355)
T ss_dssp CGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHH--
T ss_pred CHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHH--
Confidence 34478888 445555655541 1 123568999999999999999999876 11 22333322
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-------------ccccccCC---CCC
Q 038611 174 LDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-------------LEKVGIPE---PNK 237 (837)
Q Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~---~~~ 237 (837)
.+. .... .........+.......++.+|+||+++.... ...+...+ ...
T Consensus 119 ----~l~--------~~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 119 ----DLV--------SKWM--GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp ----HHH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred ----HHh--------hhhc--chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 111 1110 11122333344444456789999999975321 11111111 111
Q ss_pred CCCcEEEEEeCChh-----HhhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCc-hhHHHH
Q 038611 238 ENGCKLVITTRSYR-----VCRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCL-PLAIVT 310 (837)
Q Consensus 238 ~~~s~iivTtR~~~-----v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~ 310 (837)
..+..||.||.... +.. .... +.+...+.++-..++...+......- -......|++.+.|. +-.|..
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHH
Confidence 33455666776542 222 2333 78889999999999988876542211 234567888999884 434544
Q ss_pred HH
Q 038611 311 VA 312 (837)
Q Consensus 311 ~~ 312 (837)
+.
T Consensus 260 l~ 261 (355)
T 2qp9_X 260 VV 261 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.98 E-value=1.7e-05 Score=76.08 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=40.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 108 ETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 108 ~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..++|| +.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGR--DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcc--hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999 6788899999888777888999999999999999999876
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=6.3e-06 Score=87.94 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=6.6
Q ss_pred hccCeeEEeeccc
Q 038611 634 DRLDTFEGHFSKL 646 (837)
Q Consensus 634 ~~L~~L~l~~~~~ 646 (837)
++|+.|+++.|.+
T Consensus 307 ~~L~~L~L~~n~i 319 (362)
T 2ra8_A 307 KHLKFINMKYNYL 319 (362)
T ss_dssp TTCSEEECCSBBC
T ss_pred CcceEEECCCCcC
Confidence 5555555554443
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.96 E-value=8.2e-05 Score=78.71 Aligned_cols=170 Identities=10% Similarity=0.098 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCCC-CCEEEEEcCCCChHHHHHHHHHHHHHhhc-------------------CCCCeEEEEEeC---C
Q 038611 116 KKVVEIIWENLMGDK-APKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIWVTVS---Q 172 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs---~ 172 (837)
++..+.+...+..++ .+.+.++|+.|+||||+|+.+++...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677777777766 46899999999999999999998762111 0122 2233221 1
Q ss_pred CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCCh
Q 038611 173 PLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSY 250 (837)
Q Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~ 250 (837)
...+..+ +++.+.+.... ..+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 87 ~~~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1122111 22222221110 03467889999998642 2222322222223456777776664
Q ss_pred h-Hhh--hCCcceEEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 251 R-VCR--SMKCKQVEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 251 ~-v~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+ +.. ...+..+.+.+++.++....+.+.... ..+.+..+++.++|.|..+..+.
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM--------SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC--------CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 3 211 122334999999999999988876511 23456789999999998775543
No 194
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=0.00021 Score=78.61 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=98.4
Q ss_pred CccccccchhHHHHHHHHHhc------------CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 107 TETLVGEKTKKVVEIIWENLM------------GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
...++|. +..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.. .. ...+.++.+.-
T Consensus 133 ~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~~~~~v~~~~l- 204 (444)
T 2zan_A 133 WSDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDL- 204 (444)
T ss_dssp GGGSCSC--HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--SEEEEECCC---
T ss_pred HHHhcCH--HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--CCEEEEeHHHH-
Confidence 3478887 556666665542 1234789999999999999999999864 11 12233332221
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc-------------ccccccCCCC---CC
Q 038611 175 DLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP-------------LEKVGIPEPN---KE 238 (837)
Q Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~---~~ 238 (837)
... ..+.. .. .+..+.......++.+|+||+++.... ...+...+.. ..
T Consensus 205 -----~~~---~~g~~----~~---~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 205 -----VSK---WLGES----EK---LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ---------------C----CC---THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -----Hhh---hcchH----HH---HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 111 01110 11 122233333345789999999985310 1112222211 13
Q ss_pred CCcEEEEEeCChhHh---hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch-hHHHHHH
Q 038611 239 NGCKLVITTRSYRVC---RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP-LAIVTVA 312 (837)
Q Consensus 239 ~~s~iivTtR~~~v~---~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~ 312 (837)
.+..||.||...... -...... +.+...+.++...+|...+....... -......|++.+.|.. -.|..+.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455667677654321 1112333 77888888888899988775442111 2345678889998854 3454443
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=9.4e-06 Score=75.86 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=64.9
Q ss_pred CCCcEEEEeeecchhhhhhcccccccccccccccccccEEEEecCCCCCcchhhhhhhhc----CCccEEEeccccchhh
Q 038611 705 EDVQCLEMFEVYDIASLNDVLPREQGLVNIGKFSHDLKVLRFYYCNNLKNLFSLRLLPAL----KNLECLEVCGCDSIEE 780 (837)
Q Consensus 705 ~~L~~L~l~~~~~~~~l~~~~~~L~~L~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L----~~L~~L~l~~c~~l~~ 780 (837)
..|+.|++++|. +++. .+.....++ +|++|+|++|..+++- .+..+..+ ++|++|+|++|++++.
T Consensus 61 ~~L~~LDLs~~~-Itd~--------GL~~L~~~~-~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--------GFDHMEGLQ-YVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGG--------GGGGGTTCS-CCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH--------HHHHhcCCC-CCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468999999887 3221 111123566 9999999999988885 33334432 4799999999988865
Q ss_pred hhccccchhhhhcccccccccccCCCcceEeccccccccccc
Q 038611 781 IVAVEDEETEKELGTITIINILTLPRLKKLEFHYLPEFKTFC 822 (837)
Q Consensus 781 i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~p~L~~i~ 822 (837)
--. ..+..+|+|+.|+|++||.+....
T Consensus 130 ~Gl---------------~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 130 KGI---------------IALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HHH---------------HHGGGCTTCCEEEEESCTTCCCHH
T ss_pred HHH---------------HHHhcCCCCCEEECCCCCCCCchH
Confidence 411 134568999999999999988753
No 196
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.85 E-value=0.0001 Score=80.06 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=74.1
Q ss_pred CccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCccccCCCc--cccccCCCCEEeccCCcCcccc-
Q 038611 502 NLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVP- 577 (837)
Q Consensus 502 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp- 577 (837)
.+..|+...|.++.+|+.+.+.. .+..++ .++.++.+|+.+++.. .++.++ .+.++.+|+.+.+..+ +..+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc-eeeecc
Confidence 46778888999999999999975 477776 4678899999999975 366666 4777788877766433 11111
Q ss_pred ----------------------ccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 578 ----------------------EGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 578 ----------------------~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
..+.++++|+.+.+..+ +..++.+.+.++++|+.+.+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEc
Confidence 12345666777666433 34555555666666666666
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.75 E-value=0.00011 Score=81.53 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=82.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCeEEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~----f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
.++|| +.+++.+...+......-+.|+|++|+|||++|+.+++........ -..++.++++
T Consensus 181 ~iiGr--~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 181 PVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp CCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCc--HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------
Confidence 68999 7788899999877666778899999999999999999886221100 1112233322
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhH---hhh-----C
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRV---CRS-----M 256 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v---~~~-----~ 256 (837)
..... ........+.......++.+|++| ........+...+. ....++|.+|..... ... .
T Consensus 246 ~~~~g------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 246 TKYRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ccccc------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00000 001122334444445667889999 22222222332232 223456655554431 000 1
Q ss_pred CcceEEeccCCHHhHHHHHHHHhCC
Q 038611 257 KCKQVEVELLSKEEAFNLFIDRVGS 281 (837)
Q Consensus 257 ~~~~~~l~~L~~~~~~~Lf~~~~~~ 281 (837)
....+.+.+.+.++...++......
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHHH
Confidence 1223889999999999999876543
No 198
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.68 E-value=0.00061 Score=73.92 Aligned_cols=131 Identities=9% Similarity=0.152 Sum_probs=86.9
Q ss_pred CCCCCCCCCCCCC-cccEEEccCCcCccccChhHhhcCCCCcEEEecCCC---CcccC-hhhhcccccceecccCccccC
Q 038611 478 IDEIPSNMSPHCE-ILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA---IEVLP-NSVSDLMNLISLLLQRCRRLK 552 (837)
Q Consensus 478 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~---i~~lp-~~i~~l~~L~~L~L~~~~~l~ 552 (837)
++.++...|.+|+ .|+.+.+..+ +..|....|.++.+|+.+.+..+. +..++ ..+..+.+|+.+.+.. .++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 3455566677774 5888888653 777888888888888888887653 55554 4556677787777654 355
Q ss_pred CCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 553 RVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 553 ~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
.++ .+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+.. +.|+.+.+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~i 189 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHI 189 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEE
Confidence 666 4777888888888653 344443 4567778888877543 55555554443 56777766
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.64 E-value=2.1e-05 Score=72.04 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=30.3
Q ss_pred cccccchhHHHHHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|+ ...+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~--s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGR--SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCS--SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeC--CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46787 345555555442 1223446899999999999999998864
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.62 E-value=0.00097 Score=69.23 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=93.6
Q ss_pred CccccccchhHHHHHHHHHhc-------------CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 107 TETLVGEKTKKVVEIIWENLM-------------GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
...++|. +..++.|.+++. -...+.|.|+|++|+|||+||+.+++.. .. ..+.++
T Consensus 14 ~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~---- 81 (301)
T 3cf0_A 14 WEDIGGL--EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK---- 81 (301)
T ss_dssp GGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC----
T ss_pred HHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE----
Confidence 3468887 445555544432 1345789999999999999999999875 11 122332
Q ss_pred cCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc------------c----ccccccCCC--
Q 038611 174 LDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF------------P----LEKVGIPEP-- 235 (837)
Q Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~----~~~l~~~~~-- 235 (837)
...+.... .+.. . ..+..+........+.+|+||+++... . ...+...+.
T Consensus 82 --~~~l~~~~---~g~~----~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 --GPELLTMW---FGES----E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp --HHHHHHHH---HTTC----T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred --hHHHHhhh---cCch----H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 22222221 1211 1 112233333334568999999997310 0 111111110
Q ss_pred CCCCCcEEEEEeCChhHh-----hhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 236 NKENGCKLVITTRSYRVC-----RSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 236 ~~~~~s~iivTtR~~~v~-----~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
....+..||.||...... ....... +.+...+.++-.+++...+.......... ...+++.+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 113355677777665321 1112223 88999999998898887765431111111 23555667777654
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.62 E-value=0.00018 Score=86.26 Aligned_cols=152 Identities=14% Similarity=0.201 Sum_probs=84.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
.++|| ++++..+++.+......-+.++|.+|+||||+|+.+++....... .-..+++++++.-..
T Consensus 171 ~viGr--~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 171 PVIGR--DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCSC--HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred ccCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 68999 778899999988776677899999999999999999988632110 012344444322110
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhc-CCeEEEEEeCCCCCcc-------cc---ccccCCCCCCCCcEEEEEeCChhH-
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKA-KAKFVLILDDMWEAFP-------LE---KVGIPEPNKENGCKLVITTRSYRV- 252 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~-------~~---~l~~~~~~~~~~s~iivTtR~~~v- 252 (837)
+. .........+..+...+.. +++.+|++|+++.... ++ .+...+ . ..+..+|.+|.....
T Consensus 240 ---g~--~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~-~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ---GA--KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-A-RGELRLIGATTLDEYR 312 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-H-TTCCCEEEEECHHHHH
T ss_pred ---cC--ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-h-CCCeEEEEecCchHHh
Confidence 00 0011233344455555543 3689999999975320 11 111111 1 123345655554332
Q ss_pred ----hhhC--CcceEEeccCCHHhHHHHHHHH
Q 038611 253 ----CRSM--KCKQVEVELLSKEEAFNLFIDR 278 (837)
Q Consensus 253 ----~~~~--~~~~~~l~~L~~~~~~~Lf~~~ 278 (837)
.... ....+.+.+++.++...++...
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 1111 1122889999999999988754
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=6.5e-05 Score=70.15 Aligned_cols=84 Identities=12% Similarity=0.114 Sum_probs=51.1
Q ss_pred CcccEEEccCCcCccccChhHhhcCCCCcEEEecCCC-Cccc-Chhhhcc----cccceecccCccccCCCc--cccccC
Q 038611 490 EILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTA-IEVL-PNSVSDL----MNLISLLLQRCRRLKRVP--SVAKLL 561 (837)
Q Consensus 490 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~l----~~L~~L~L~~~~~l~~lp--~~~~l~ 561 (837)
.+|+.|+++++. ++...-..+.++++|+.|+|++|. ++.- -..+..+ ++|++|+|++|..+++-. .+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467778887773 544333334677777777777775 4421 1234433 357777777777666544 456667
Q ss_pred CCCEEeccCC-cCc
Q 038611 562 ALQHLDLRGT-SIE 574 (837)
Q Consensus 562 ~L~~L~l~~~-~i~ 574 (837)
+|++|++++| .++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 7777777766 344
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.55 E-value=5.5e-05 Score=72.16 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcC---CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC
Q 038611 116 KKVVEIIWENLMG---DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLP 192 (837)
Q Consensus 116 ~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 192 (837)
+..++.+.+++.+ .....+.|+|++|+||||||+.+++...... .+ .+++++ ..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEEE------HHHHHHHHHHHhcCchH
Confidence 3445555555543 2458899999999999999999999873222 21 233443 44455555444432211
Q ss_pred CCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--cccc--ccccCCCC-CCCCcEEEEEeCC
Q 038611 193 ENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLE--KVGIPEPN-KENGCKLVITTRS 249 (837)
Q Consensus 193 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~--~l~~~~~~-~~~~s~iivTtR~ 249 (837)
. .+...+ .++-+|||||++.. ..|. .+...+.. ...|..||+||..
T Consensus 92 ---~------~~~~~~--~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ---T------KFLKTV--LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ---S------HHHHHH--HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ---H------HHHHHh--cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 122233 24668999999842 2332 11111111 1246678888875
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0043 Score=65.85 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|.|||.||+++++.. .. ..+.|..++-.+ .. .......+..+.....
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l~s--------------k~--vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT---DC---KFIRVSGAELVQ--------------KY--IGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH---TC---EEEEEEGGGGSC--------------SS--TTHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh---CC---CceEEEhHHhhc--------------cc--cchHHHHHHHHHHHHH
Confidence 35789999999999999999999986 22 234454433211 11 1122333444444444
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhH-----hhhCCcce-EEecc
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRV-----CRSMKCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v-----~~~~~~~~-~~l~~ 265 (837)
...+.+|++|+++.... ...+...+. ....+..||.||...+. .+...... +.++.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~l 318 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCC
Confidence 66799999999974210 011111111 12334456667766543 11112333 88888
Q ss_pred CCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 266 LSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 266 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
-+.++-.++|+.+.......... ....|++.+.|.--|
T Consensus 319 Pd~~~R~~Il~~~~~~~~l~~dv----dl~~lA~~t~G~SGA 356 (405)
T 4b4t_J 319 PSVAARAEILRIHSRKMNLTRGI----NLRKVAEKMNGCSGA 356 (405)
T ss_dssp CCHHHHHHHHHHHHTTSBCCSSC----CHHHHHHHCCSCCHH
T ss_pred cCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHCCCCCHH
Confidence 89999899998776543111111 145677888876543
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=5.8e-05 Score=72.31 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=55.0
Q ss_pred hcCCCCcEEEecCC-CCcc-----cChhhhcccccceecccCccccCC-----Cc-cccccCCCCEEeccCCcCcc----
Q 038611 512 AHMHGLKILNLSFT-AIEV-----LPNSVSDLMNLISLLLQRCRRLKR-----VP-SVAKLLALQHLDLRGTSIEE---- 575 (837)
Q Consensus 512 ~~l~~L~~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~-----lp-~~~~l~~L~~L~l~~~~i~~---- 575 (837)
...+.|++|+|++| .+.. +...+...++|++|+|++|. +.. +. .+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 44455555555555 4431 23334444555555555543 221 11 23344566777777776543
Q ss_pred -ccccccCCCCCCEEec--cCCCCCC-----CCCCcccCCccCcEEEcc
Q 038611 576 -VPEGMQMLENLSHLYL--YSPPLKE-----LPAGLLPRLRKLCRLSLY 616 (837)
Q Consensus 576 -lp~~~~~l~~L~~L~l--~~~~l~~-----~p~~~l~~l~~L~~L~l~ 616 (837)
+...+...++|++|++ ++|.+.. +.. .+...++|++|++.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEecc
Confidence 4455666677777777 6666553 211 14455678888873
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.001 Score=78.92 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=91.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcC---CCCeEEEE-EeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIWV-TVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~---~f~~~~wv-~vs~~~~~~~~~~~i~ 184 (837)
.++|| +.+++.+.+.+......-+.|+|.+|+||||+|+.+++......- .....+|. ..+.-
T Consensus 187 ~~iGr--~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 187 PLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CccCC--HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 68999 778889999998777778899999999999999999987632111 12333332 11110
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--------cc--cccccCCCCCCCCcEEEEEeCChhHhh
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--------PL--EKVGIPEPNKENGCKLVITTRSYRVCR 254 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--------~~--~~l~~~~~~~~~~s~iivTtR~~~v~~ 254 (837)
+.. ..........+..+.+.+...++.+|++||++... .. ..+..++.. .....+|.+|.......
T Consensus 254 --~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 --LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ---CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHC
T ss_pred --hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhh
Confidence 000 01122344455566666655567999999997541 11 111222222 23456666665543211
Q ss_pred hC--------CcceEEeccCCHHhHHHHHHHHh
Q 038611 255 SM--------KCKQVEVELLSKEEAFNLFIDRV 279 (837)
Q Consensus 255 ~~--------~~~~~~l~~L~~~~~~~Lf~~~~ 279 (837)
.. ....+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11 11138899999999888887643
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00037 Score=72.22 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCCCC
Q 038611 116 KKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQ-PLDLIKLQTEIATALKESLPE 193 (837)
Q Consensus 116 ~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~ 193 (837)
++.++.+...+..++.+.+.++|+.|+||||+|+.+++....-. .+.+ +.++..+. ...+..+ +++.+.+....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p-- 78 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP-- 78 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC--
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc--
Confidence 34566777777777778999999999999999999987531111 2333 34554432 2333332 33444433211
Q ss_pred CccHHHHHHHHHHHHhcCCeEEEEEeCCCCCc--cccccccCCCCCCCCcEEEEEeCChh-Hhh-hCCcceEEeccCCHH
Q 038611 194 NEDKVSRAGRLLGMLKAKAKFVLILDDMWEAF--PLEKVGIPEPNKENGCKLVITTRSYR-VCR-SMKCKQVEVELLSKE 269 (837)
Q Consensus 194 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~~s~iivTtR~~~-v~~-~~~~~~~~l~~L~~~ 269 (837)
..+++-++|+|+++... ..+.+...+......+.+|++|.+.. +.. .... .+++.+++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 02456788999998642 23333322222234566776665532 211 1111 5899999999
Q ss_pred hHHHHHHHHh
Q 038611 270 EAFNLFIDRV 279 (837)
Q Consensus 270 ~~~~Lf~~~~ 279 (837)
+....+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988776
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.45 E-value=0.0014 Score=69.10 Aligned_cols=49 Identities=8% Similarity=0.156 Sum_probs=36.3
Q ss_pred EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHHH
Q 038611 261 VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTVA 312 (837)
Q Consensus 261 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 312 (837)
+.+++.+.++..+++.+.+....... ..+.+..|++++.|.|-.+..+.
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHHHH
Confidence 78999999999999988764321122 35678999999999997655443
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=7.2e-05 Score=71.64 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=67.7
Q ss_pred CCCCcccEEEccCCcCccc-----cChhHhhcCCCCcEEEecCCCCcc-----cChhhhcccccceecccCccccCC---
Q 038611 487 PHCEILSTLLLQRNINLQW-----IPECFFAHMHGLKILNLSFTAIEV-----LPNSVSDLMNLISLLLQRCRRLKR--- 553 (837)
Q Consensus 487 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~--- 553 (837)
..++.|++|++++|..+.. +.. .+...+.|++|+|++|.+.. +...+...++|++|+|++|. ++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 4567788888877622221 222 23556778888888887653 34455566778888888754 332
Q ss_pred --Cc-cccccCCCCEEec--cCCcCcc-----ccccccCCCCCCEEeccCCCC
Q 038611 554 --VP-SVAKLLALQHLDL--RGTSIEE-----VPEGMQMLENLSHLYLYSPPL 596 (837)
Q Consensus 554 --lp-~~~~l~~L~~L~l--~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l 596 (837)
+. .+...++|++|+| ++|.+.. +...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 23 3566677888888 6676653 444555667788888877754
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0043 Score=66.95 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|.|||+||+++++.. .. ..+.+..+.-.+ .. .......+..+.....
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~---~~---~~~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI---GA---NFIFSPASGIVD--------------KY--IGESARIIREMFAYAK 271 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehhhhcc--------------cc--chHHHHHHHHHHHHHH
Confidence 36899999999999999999999986 11 234444433211 11 1122233344444444
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhHhhh----C-Ccce-EEecc
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRVCRS----M-KCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v~~~----~-~~~~-~~l~~ 265 (837)
...+.+|++|+++.... +..+...+. ....+..||.||...+.... . .... +.++.
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l 351 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC
T ss_pred hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCC
Confidence 56799999999974210 011111111 22345567777766543211 1 1233 77888
Q ss_pred CCHHhHHHHHHHHhCCC-CCCCchhhHHHHHHHHHHhCCchh
Q 038611 266 LSKEEAFNLFIDRVGSS-ILQVPTLNREIINSIVEECGCLPL 306 (837)
Q Consensus 266 L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~GlPL 306 (837)
-+.++-.++|+.+.... ...+ .. ...|++.+.|.--
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~d-~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 352 PNEAGRLEIFKIHTAKVKKTGE-FD----FEAAVKMSDGFNG 388 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCBCSC-CC----HHHHHHTCCSCCH
T ss_pred cCHHHHHHHHHHHhcCCCCCcc-cC----HHHHHHhCCCCCH
Confidence 88888888888766433 1111 11 3566777877553
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.37 E-value=0.0014 Score=72.54 Aligned_cols=168 Identities=13% Similarity=0.130 Sum_probs=92.5
Q ss_pred cccccchhHHHHHHHHHhc-------------CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 109 TLVGEKTKKVVEIIWENLM-------------GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
.++|. +..+++|.+++. ....+-|.|+|++|+|||++|+.+++.. . ...+.++++.
T Consensus 205 ~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~---~~fv~vn~~~--- 273 (489)
T 3hu3_A 205 DIGGC--RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---G---AFFFLINGPE--- 273 (489)
T ss_dssp GCCSC--HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---S---SEEEEEEHHH---
T ss_pred HcCCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---C---CCEEEEEchH---
Confidence 57887 556666655543 2345779999999999999999998764 1 1234444211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--------cc-----ccccccCCC--CCCCC
Q 038611 176 LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--------FP-----LEKVGIPEP--NKENG 240 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--------~~-----~~~l~~~~~--~~~~~ 240 (837)
+. .... .........+......+++.+|+||+++.. .. ...+...+. ....+
T Consensus 274 -------l~----~~~~--g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 -------IM----SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -------HH----TSCT--THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -------hh----hhhc--chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 11 1111 112222333444444667889999999421 00 011111111 11334
Q ss_pred cEEEEEeCChhH-----hhhCCcce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCc
Q 038611 241 CKLVITTRSYRV-----CRSMKCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCL 304 (837)
Q Consensus 241 s~iivTtR~~~v-----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 304 (837)
..||.||..... ........ +.+...+.++-.+++...+......... ....+++.+.|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~ 406 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV----DLEQVANETHGH 406 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh----hHHHHHHHccCC
Confidence 566667766532 11122333 8899999999999998876543211111 134566667664
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0028 Score=68.27 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|.|||+||+++++.. .. ..+.|+.++-.+ .. .......+..+.....
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~---~~---~~~~v~~~~l~~--------------~~--~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST---KA---AFIRVNGSEFVH--------------KY--LGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH---TC---EEEEEEGGGTCC--------------SS--CSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CC---CeEEEecchhhc--------------cc--cchhHHHHHHHHHHHH
Confidence 35789999999999999999999986 11 234444433211 11 1122333444444444
Q ss_pred cCCeEEEEEeCCCCC--------cc--------ccccccCCC--CCCCCcEEEEEeCChhH---h--hhCCcce-EEecc
Q 038611 210 AKAKFVLILDDMWEA--------FP--------LEKVGIPEP--NKENGCKLVITTRSYRV---C--RSMKCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~--------~~--------~~~l~~~~~--~~~~~s~iivTtR~~~v---~--~~~~~~~-~~l~~ 265 (837)
...+.+|++|+++.. .. +..+...+. ....+..||.||...+. | +...... +.+..
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~ 342 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence 567899999998621 00 111111111 12344566777765442 1 1112233 67765
Q ss_pred CC-HHhHHHHHHHHhCCC-CCCCchhhHHHHHHHHHHhCCch
Q 038611 266 LS-KEEAFNLFIDRVGSS-ILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 266 L~-~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
+. .++-..+|....... ..++ . ....|++.+.|.-
T Consensus 343 lPd~~~R~~Il~~~~~~~~l~~~-~----dl~~lA~~t~G~s 379 (428)
T 4b4t_K 343 LRDRRERRLIFGTIASKMSLAPE-A----DLDSLIIRNDSLS 379 (428)
T ss_dssp SCCHHHHHHHHHHHHHSSCBCTT-C----CHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCcc-c----CHHHHHHHCCCCC
Confidence 64 444555665554332 1111 1 1356777887754
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0075 Score=64.24 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
..+-|.++|++|.|||.||+++++.. ... .+.++.++- .... .......+..+.....
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l--------------~sk~--vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSEL--------------IQKY--LGDGPRLCRQIFKVAG 272 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGG--------------CCSS--SSHHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHh--------------hhcc--CchHHHHHHHHHHHHH
Confidence 35889999999999999999999986 111 234443321 1111 1122333444444444
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhHhhh-C----Ccce-EEecc
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRVCRS-M----KCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v~~~-~----~~~~-~~l~~ 265 (837)
...+.+|++|+++.... +..+...+. ....+..||.||-..+.... . .... +.+..
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~l 352 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 352 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCC
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCC
Confidence 56799999999874210 001111110 12334456667766554221 1 1222 77888
Q ss_pred CCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 266 LSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 266 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
-+.++-.++|+.+........... ...|++.+.|.-
T Consensus 353 Pd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 353 PDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 888888888887765431111111 356677787754
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.00017 Score=72.81 Aligned_cols=78 Identities=27% Similarity=0.228 Sum_probs=49.7
Q ss_pred hcCCCCcEEEecCCCCccc---ChhhhcccccceecccCccccCCCccccccC--CCCEEeccCCcCcc-ccc-------
Q 038611 512 AHMHGLKILNLSFTAIEVL---PNSVSDLMNLISLLLQRCRRLKRVPSVAKLL--ALQHLDLRGTSIEE-VPE------- 578 (837)
Q Consensus 512 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~--~L~~L~l~~~~i~~-lp~------- 578 (837)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++| .++.+..+..+. +|++|+|++|.+.. +|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5677888888888876654 355567777777777774 455444333343 77777777776543 331
Q ss_pred cccCCCCCCEEe
Q 038611 579 GMQMLENLSHLY 590 (837)
Q Consensus 579 ~~~~l~~L~~L~ 590 (837)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245667777776
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0079 Score=64.75 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|.|||+||+++++.. .. ..+.+..+.-. ... .......+..+.....
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~---~fi~vs~s~L~--------------sk~--vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DA---TFIRVIGSELV--------------QKY--VGEGARMVRELFEMAR 299 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGC--------------CCS--SSHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CC---CeEEEEhHHhh--------------ccc--CCHHHHHHHHHHHHHH
Confidence 46899999999999999999999986 11 23444433211 111 1122333444444444
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCC--CCCCCcEEEEEeCChhH---h--hhCCcce-EEecc
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKENGCKLVITTRSYRV---C--RSMKCKQ-VEVEL 265 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~s~iivTtR~~~v---~--~~~~~~~-~~l~~ 265 (837)
...+.+|++|+++.... ...+...+. ....+..||.||...+. | +...... +.+..
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 56799999999974210 001111111 12334455667755443 1 1112333 88888
Q ss_pred CCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 266 LSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 266 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
-+.++-.++|+.++........-. ...|++.|.|.-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 888988899987765431111111 356778888864
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.32 E-value=0.00049 Score=66.85 Aligned_cols=121 Identities=21% Similarity=0.146 Sum_probs=63.9
Q ss_pred cccccch--hHHHHHHHHHhcCC----CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 109 TLVGEKT--KKVVEIIWENLMGD----KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 109 ~~vGr~~--~~~~~~l~~~l~~~----~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
.+++.+. ...++.+..++... ....+.|+|++|+|||+||+.+++.... ....++|++++ .+...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~~ 96 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFRE 96 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHHH
Confidence 4555431 33455555665432 2278999999999999999999998632 23446676543 33344
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC--ccccc--ccc-CCCC-CCCCcEEEEEeCC
Q 038611 183 IATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA--FPLEK--VGI-PEPN-KENGCKLVITTRS 249 (837)
Q Consensus 183 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~~~--l~~-~~~~-~~~~s~iivTtR~ 249 (837)
+...... . ... .+...+.. .-+|||||++.. ..|.. +.. .+.. ...+..+|+||..
T Consensus 97 ~~~~~~~----~-~~~----~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 97 LKHSLQD----Q-TMN----EKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHC-------C-CCH----HHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHhcc----c-hHH----HHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 4332211 1 111 12222322 238999999653 33322 211 1111 1234568888875
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.31 E-value=0.0013 Score=77.96 Aligned_cols=147 Identities=12% Similarity=0.158 Sum_probs=82.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCC---Ce-EEEEEeCCCcCHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NV-VIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f---~~-~~wv~vs~~~~~~~~~~~i~ 184 (837)
.++|| +.+++.+...+......-+.++|++|+|||++|+.+++........+ .+ ++.++.
T Consensus 181 ~iiG~--~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 181 PVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp CCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CccCc--hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 68999 77889999999877667789999999999999999998862211111 11 122221
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCccccccccCCCCCCCCcEEEEEeCChhH--------hhhC
Q 038611 185 TALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFPLEKVGIPEPNKENGCKLVITTRSYRV--------CRSM 256 (837)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v--------~~~~ 256 (837)
+.... ......+..+.......++.+|++| ........+...+ . ....++|.||..... +-..
T Consensus 245 ---g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ---GTKYR--GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ---ccccc--chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 11000 0111223344444445678899999 2222222222222 2 234466666654441 1011
Q ss_pred CcceEEeccCCHHhHHHHHHHHhC
Q 038611 257 KCKQVEVELLSKEEAFNLFIDRVG 280 (837)
Q Consensus 257 ~~~~~~l~~L~~~~~~~Lf~~~~~ 280 (837)
....+.+...+.++...++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 122389999999999999986554
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.21 E-value=0.00043 Score=69.80 Aligned_cols=78 Identities=23% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCcccEEEccCCcCccccCh--hHhhcCCCCcEEEecCCCCcccChhhhccc--ccceecccCccccCCCc--------c
Q 038611 489 CEILSTLLLQRNINLQWIPE--CFFAHMHGLKILNLSFTAIEVLPNSVSDLM--NLISLLLQRCRRLKRVP--------S 556 (837)
Q Consensus 489 ~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp--------~ 556 (837)
+++|++|+|++| .+..++. ..+..+++|++|+|++|.+..+. .+..+. +|++|+|++|..-..+| .
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 345555666555 3333321 33467777777777777776652 344444 77777777765443333 1
Q ss_pred ccccCCCCEEec
Q 038611 557 VAKLLALQHLDL 568 (837)
Q Consensus 557 ~~~l~~L~~L~l 568 (837)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 566777877763
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0045 Score=66.73 Aligned_cols=168 Identities=12% Similarity=0.110 Sum_probs=91.4
Q ss_pred cccccchhHHHHHHHHHh----cC---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 109 TLVGEKTKKVVEIIWENL----MG---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l----~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
.+.|- ++.+++|.+.+ .. ..++-|.++|++|.|||.||+++++.. .. ..+.++.++-
T Consensus 182 digGl--~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l-- 251 (434)
T 4b4t_M 182 DVGGL--DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NA---TFLKLAAPQL-- 251 (434)
T ss_dssp GSCSC--HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGG--
T ss_pred hcCcH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CC---CEEEEehhhh--
Confidence 56676 45555555443 21 236889999999999999999999986 11 2344443331
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCC-------cc---------ccccccCCC--CC
Q 038611 176 LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEA-------FP---------LEKVGIPEP--NK 237 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~-------~~---------~~~l~~~~~--~~ 237 (837)
.... .......+..+........+.+|++|+++.. .. ...+...+. ..
T Consensus 252 ------------~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 252 ------------VQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp ------------CSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred ------------hhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 1111 1122233334444333457899999998621 00 011111111 12
Q ss_pred CCCcEEEEEeCChhHhh-h----CCcce-EEeccCCHHhHHHHHHHHhCCC-CCCCchhhHHHHHHHHHHhCCch
Q 038611 238 ENGCKLVITTRSYRVCR-S----MKCKQ-VEVELLSKEEAFNLFIDRVGSS-ILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 238 ~~~s~iivTtR~~~v~~-~----~~~~~-~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
..+..||.||...+... . ..... +.++.-+.++-.++|+.+.... ..++ - ....|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d-v----dl~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD-I----NWQELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC-C----CHHHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc-C----CHHHHHHhCCCCC
Confidence 33445666776654321 1 12233 7888888888888887665322 1111 0 1356777887754
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.18 E-value=0.00043 Score=72.38 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=38.4
Q ss_pred cccccchhHHHHHHHHHhcCC--------C-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLMGD--------K-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~--------~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|. +..++.+...+... . ...+.|+|++|+|||++|+.+++...... ...+.+.++.
T Consensus 18 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTE 85 (311)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGG
T ss_pred hcCCH--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeeccc
Confidence 45777 45555555544321 1 24799999999999999999998762211 2345566554
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.15 E-value=0.0009 Score=69.82 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=34.1
Q ss_pred cccccchhHHHHHHHHHhcC--------------CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--------------DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--------------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|+ +..++.+...+.. ....-+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCCh--HHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57888 5566666555532 235678899999999999999999875
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.12 E-value=0.0044 Score=62.56 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=89.8
Q ss_pred CCccccccch-hHHHHHHHHHhcC---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 106 PTETLVGEKT-KKVVEIIWENLMG---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 106 ~~~~~vGr~~-~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
....++|.+. .+.+.+++.++.. ...+-+.|+|++|+||||+|+.+++.. ... .+.++.++-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH
Confidence 3447888743 2223334444432 124568999999999999999999875 222 23443322111
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc----------------ccccccCCC--CC
Q 038611 176 LIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP----------------LEKVGIPEP--NK 237 (837)
Q Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~ 237 (837)
... .........+.+......+.++++|+++.... ...+...+. ..
T Consensus 84 --------------~~~--~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 --------------MFV--GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp --------------SCC--CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred --------------Hhh--hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 000 01122333444444455678999999842100 001110010 11
Q ss_pred CCCcEEEEEeCChhHh-hhC----Ccce-EEeccCCHHhHHHHHHHHhCCCC-CCCchhhHHHHHHHHHHhCC-chhHHH
Q 038611 238 ENGCKLVITTRSYRVC-RSM----KCKQ-VEVELLSKEEAFNLFIDRVGSSI-LQVPTLNREIINSIVEECGC-LPLAIV 309 (837)
Q Consensus 238 ~~~s~iivTtR~~~v~-~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~G-lPLai~ 309 (837)
..+..||.||...+.. ... .... +.+...+.++-.+++........ .++ .....++..+.| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~-----~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-----IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT-----CCHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHcCCCCHHHHH
Confidence 3345667777654321 111 1223 77788888888888877654331 111 012446666777 554343
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.10 E-value=0.0046 Score=67.79 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=93.2
Q ss_pred Cccccccch-hHHHHHHHHHhcCC---------CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCH
Q 038611 107 TETLVGEKT-KKVVEIIWENLMGD---------KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL 176 (837)
Q Consensus 107 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 176 (837)
...++|.+. ...+.+++..+... -.+-|.|+|++|+|||+||+.+++.. ... .+.+++++-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~---f~~is~~~~~~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVP---FFHISGSDFVEL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHHH
Confidence 346888733 22334444444321 23568899999999999999999875 222 234444332110
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcCCeEEEEEeCCCCCcc----------------ccccccCCC--CCC
Q 038611 177 IKLQTEIATALKESLPENEDKVSRAGRLLGMLKAKAKFVLILDDMWEAFP----------------LEKVGIPEP--NKE 238 (837)
Q Consensus 177 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~ 238 (837)
. ..........+........+.+|+||+++.... +..+...+. ...
T Consensus 89 --------------~--~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 --------------F--VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp --------------C--TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred --------------H--hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 001122333444444456789999999964211 111111110 112
Q ss_pred CCcEEEEEeCChhHhh--hC---Ccce-EEeccCCHHhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCch
Q 038611 239 NGCKLVITTRSYRVCR--SM---KCKQ-VEVELLSKEEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLP 305 (837)
Q Consensus 239 ~~s~iivTtR~~~v~~--~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 305 (837)
.+..||.||...+... .. .... +.+...+.++-.+++...+........ . ....|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~--v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED--V--NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--C--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch--h--hHHHHHHhcCCCc
Confidence 3556777777765421 11 2222 788888888888888776654311111 1 1344777788876
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00073 Score=68.93 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=33.1
Q ss_pred Cccccccch-hHHHHHHHHHhcC---------CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 107 TETLVGEKT-KKVVEIIWENLMG---------DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 107 ~~~~vGr~~-~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...++|.+. .+.+.+++..+.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 347888754 2333444443321 223457899999999999999999875
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.00 E-value=0.00066 Score=70.48 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=31.5
Q ss_pred cccccchhHHHHHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|++ ..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s--~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSS--PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCS--HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECC--HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467873 344555444422 234567799999999999999999864
No 226
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.92 E-value=0.011 Score=63.82 Aligned_cols=120 Identities=16% Similarity=0.181 Sum_probs=78.3
Q ss_pred cccEEEccccCCCCCCCCCCCCCCcccEEEccCC--cCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhccccccee
Q 038611 467 NLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRN--INLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISL 543 (837)
Q Consensus 467 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L 543 (837)
.++.+.+.. .++.+....|.+|++|+.+.+..+ ..+..++...|.++..|+.+.+..+ +..++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 467777764 477788888899999999988765 2467788888888888888777644 44444 345677788888
Q ss_pred cccCccccCCCc--cccccCCCCEEeccCCcCccccccccCCCCCCEEec
Q 038611 544 LLQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPEGMQMLENLSHLYL 591 (837)
Q Consensus 544 ~L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 591 (837)
.+.. .+..++ .+..+.+|+.+.+..+ +..+....-...+|+.+.+
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred cccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEE
Confidence 7764 344555 4667777777777553 3333332222234555554
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.91 E-value=0.00098 Score=67.83 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=34.5
Q ss_pred cccccchhHHHHHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|.+ ..+..+.+.+. .....-|.|+|.+|+|||++|+.+++...+.. ...+.++++.
T Consensus 7 ~~ig~~--~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~ 67 (265)
T 2bjv_A 7 NLLGEA--NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAA 67 (265)
T ss_dssp ---CCC--HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGG
T ss_pred cceeCC--HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCC
Confidence 467873 34444443332 12235677999999999999999998652111 2245566554
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.86 E-value=0.0044 Score=60.76 Aligned_cols=44 Identities=23% Similarity=0.177 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 180 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 180 (837)
-.++.|+|.+|+||||||..++. . . -..++|++.....+..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 47999999999999999999987 2 1 2468888877655555443
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.80 E-value=0.00093 Score=79.09 Aligned_cols=59 Identities=15% Similarity=0.303 Sum_probs=39.3
Q ss_pred cccccchhHHHHHHHHHhcC-------C-C-CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLMG-------D-K-APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~-------~-~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|. +..++.+...+.. . . ...+.++|++|+|||++|+.+++... ......+.++++.
T Consensus 492 ~viGq--~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 492 RVIGQ--DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TSCSC--HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred cCcCh--HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 57887 5556556555431 1 1 12699999999999999999998762 2223456666554
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.56 E-value=0.016 Score=57.78 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCC---------CCCccH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKESL---------PENEDK 197 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 197 (837)
.-.++.|+|++|+||||||+.++....... ..-..++|++....+...++. ++++.++... ......
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 347999999999999999999987531110 023568899877655544432 3444444321 001111
Q ss_pred H---HHHHHHHHHHhcCCeEEEEEeCCCC
Q 038611 198 V---SRAGRLLGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 198 ~---~~~~~l~~~l~~~k~~LlVlDdv~~ 223 (837)
. ..+..+.+.+...+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 1222344444445788999999854
No 231
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.54 E-value=0.0032 Score=57.49 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
....++|+|+.|+|||||++.+++.... .. ..++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g-~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AG-KNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TT-CCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cC-CcEEEEcHHH
Confidence 5679999999999999999999998632 12 2356666544
No 232
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.47 E-value=0.0095 Score=64.01 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=82.3
Q ss_pred CCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceecccCccccCCCc--ccc
Q 038611 482 PSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLLLQRCRRLKRVP--SVA 558 (837)
Q Consensus 482 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp--~~~ 558 (837)
....+..+.+|+.+.+..+ +..++...|.++..|+.+.+..+ +..++ ..+.++.+|+.+.+.. .++.++ .+.
T Consensus 209 ~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~ 283 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCS 283 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTT
T ss_pred eecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccc
Confidence 3344566677777776543 55666666777777777777654 44443 3455666777777654 355555 366
Q ss_pred ccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEc
Q 038611 559 KLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSL 615 (837)
Q Consensus 559 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l 615 (837)
++.+|+.+.+.++.++.++. .+.++++|+.+.+.. .++.++...|.++++|+.+.+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 77777777777666666654 356777777777753 366666666677777776665
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.44 E-value=0.014 Score=65.73 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+.++|++|+||||||+.++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999999876
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.44 E-value=0.002 Score=65.97 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe--CCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
.+++.|+|++|+||||||.+++... . ..++|++. .+..+. .. .+....+..+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~~---------------~~-~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLSG---------------YN-TDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSSTT---------------CB-CCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhhh---------------hh-cCHHHHHHHHHHHH
Confidence 3678899999999999999998751 1 12456666 332110 00 22333344455555
Q ss_pred hcCCeEEEEEeCCCCC
Q 038611 209 KAKAKFVLILDDMWEA 224 (837)
Q Consensus 209 ~~~k~~LlVlDdv~~~ 224 (837)
.+. + +||+|++...
T Consensus 181 ~~~-~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQH-R-VIVIDSLKNV 194 (331)
T ss_dssp HHC-S-EEEEECCTTT
T ss_pred hhC-C-EEEEeccccc
Confidence 333 4 9999999653
No 235
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.42 E-value=0.012 Score=59.85 Aligned_cols=86 Identities=8% Similarity=0.001 Sum_probs=56.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC-----CccHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE-----NEDKVSRAGRLLGM 207 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 207 (837)
++-|.|++|+||||||.+++....+ ...-..++||+....++.. .+++++.+... ..+..+....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999999877632 2224578999988777753 36677765321 11222221233333
Q ss_pred H---hcCCeEEEEEeCCCCC
Q 038611 208 L---KAKAKFVLILDDMWEA 224 (837)
Q Consensus 208 l---~~~k~~LlVlDdv~~~ 224 (837)
+ ..++.-+||+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4567899999998654
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.38 E-value=0.023 Score=66.10 Aligned_cols=152 Identities=12% Similarity=0.147 Sum_probs=84.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
.++-|.++|++|.|||+||+++++.. .. ..+.|+.++ +.... .......+..+.+...
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~el---g~---~~~~v~~~~--------------l~sk~--~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE--------------IMSKL--AGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTT---TC---EEEEEEHHH--------------HHSSC--TTHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CC---eEEEEEhHH--------------hhccc--chHHHHHHHHHHHHHH
Confidence 35789999999999999999999875 11 234454321 11111 1222334445555555
Q ss_pred cCCeEEEEEeCCCCCcc--------c-----cccccCCC--CCCCCcEEEEEeCChhH-hhhC----Ccce-EEeccCCH
Q 038611 210 AKAKFVLILDDMWEAFP--------L-----EKVGIPEP--NKENGCKLVITTRSYRV-CRSM----KCKQ-VEVELLSK 268 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~--------~-----~~l~~~~~--~~~~~s~iivTtR~~~v-~~~~----~~~~-~~l~~L~~ 268 (837)
...+.+|+||+++.... . ..+...+. ....+..||.||...+. -... .... +.+...+.
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence 66799999999974210 0 11111110 11223345556655432 1111 2233 88888888
Q ss_pred HhHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhH
Q 038611 269 EEAFNLFIDRVGSSILQVPTLNREIINSIVEECGCLPLA 307 (837)
Q Consensus 269 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 307 (837)
++-.++++............ ....|++++.|.--|
T Consensus 375 ~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 375 TGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCCHH
T ss_pred HHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCCHH
Confidence 88888887765443111111 145677888886543
No 237
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.31 E-value=0.0044 Score=63.87 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999986
No 238
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.28 E-value=0.015 Score=60.91 Aligned_cols=93 Identities=12% Similarity=0.198 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCccH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKESLP---------ENEDK 197 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 197 (837)
...++.|+|.+|+||||||.+++....... ..-..++|++....++..++. ++++.++.+.. ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 347999999999999999999987642110 013578999988877766654 34455543210 01111
Q ss_pred H---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 038611 198 V---SRAGRLLGMLKA-KAKFVLILDDMWE 223 (837)
Q Consensus 198 ~---~~~~~l~~~l~~-~k~~LlVlDdv~~ 223 (837)
. ..+..+...+.. .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1 122333333333 5677888888743
No 239
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.22 E-value=0.019 Score=61.61 Aligned_cols=136 Identities=13% Similarity=0.239 Sum_probs=98.2
Q ss_pred ccccEEEccccCCCCCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCCcccC-hhhhcccccceec
Q 038611 466 ANLERVSLMMNDIDEIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAIEVLP-NSVSDLMNLISLL 544 (837)
Q Consensus 466 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~ 544 (837)
..++.+.+.. .+..+....+..|..|+.+.+..+ +..+....|.++..|+.+.+..+ +..++ ..+..+.+|+.+.
T Consensus 217 ~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 3455665543 355666677788899999988764 77788888889999999998654 56665 4567888999998
Q ss_pred ccCccccCCCc--cccccCCCCEEeccCCcCccccc-cccCCCCCCEEeccCCCCCCCCCCcccCCc
Q 038611 545 LQRCRRLKRVP--SVAKLLALQHLDLRGTSIEEVPE-GMQMLENLSHLYLYSPPLKELPAGLLPRLR 608 (837)
Q Consensus 545 L~~~~~l~~lp--~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~ 608 (837)
+.+ +.++.++ .+.++.+|+.+.+..+ ++.++. .+.++++|+.+.+..+ ++.+..+.|.+.+
T Consensus 293 l~~-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 293 MDN-SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccc-cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 876 4567776 5888999999998654 666654 4678889998887543 5666555555543
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.19 E-value=0.013 Score=61.59 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLP-----ENEDKVSRAGRLL 205 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 205 (837)
-+++.|+|++|+||||||.+++..... .-..++|++....++.. .++.++.... ......+.+..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 479999999999999999999987632 22357899877666643 4555554321 1122222222222
Q ss_pred HHHhcCCeEEEEEeCCCCC
Q 038611 206 GMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~~~ 224 (837)
......+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 2222355668899998654
No 241
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.16 E-value=0.025 Score=59.63 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCcCHHHHHHHHHHHhcC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKE 189 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 189 (837)
..++.|+|.+|+||||||.+++....... ..-..++|++....++..++. +++..++.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46999999999999999999987631111 023578999988877766554 34445443
No 242
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.15 E-value=0.036 Score=58.48 Aligned_cols=160 Identities=9% Similarity=-0.045 Sum_probs=95.0
Q ss_pred hcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 038611 126 LMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLL 205 (837)
Q Consensus 126 l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 205 (837)
+.+.-.+++.++|..|.||++.|+.+.+... ...|+....+......++.++...+. .
T Consensus 13 l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~ 70 (343)
T 1jr3_D 13 LNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQ--------------------A 70 (343)
T ss_dssp HHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHH--------------------H
T ss_pred HhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhc--------------------C
Confidence 3334468999999999999999999988752 22343322223333334433332211 1
Q ss_pred HHHhcCCeEEEEEeCCCC-C--ccccccccCCCCCCCCcEEEEEeCC-------hhHhhh-C-CcceEEeccCCHHhHHH
Q 038611 206 GMLKAKAKFVLILDDMWE-A--FPLEKVGIPEPNKENGCKLVITTRS-------YRVCRS-M-KCKQVEVELLSKEEAFN 273 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~s~iivTtR~-------~~v~~~-~-~~~~~~l~~L~~~~~~~ 273 (837)
..+ .+.+-++|+|+++. . ..++.+...+.....++.+|++|.. ..+... . .+..++..+++.++...
T Consensus 71 ~pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 MSL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred cCC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 122 35677888999865 2 3344443333222346666665532 233322 2 23348999999999998
Q ss_pred HHHHHhCCCCCCCchhhHHHHHHHHHHhCCchhHHHHH
Q 038611 274 LFIDRVGSSILQVPTLNREIINSIVEECGCLPLAIVTV 311 (837)
Q Consensus 274 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 311 (837)
.+.+.+......- -.+.+..+++.++|.+.++...
T Consensus 150 ~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 150 WVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHHH
Confidence 8887664332111 3567888999999988877654
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.05 E-value=0.017 Score=60.48 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhc---------CCC----CeEEEEEeCCCcCHHHHHHHHHHHhcC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKET---------NKF----NVVIWVTVSQPLDLIKLQTEIATALKE 189 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~vs~~~~~~~~~~~i~~~l~~ 189 (837)
-.++.|+|.+|+||||||.+++....... ... ..++|++....++..++.+ +++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 47999999999999999999987531110 111 4789999888777666653 3455543
No 244
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.98 E-value=0.015 Score=64.03 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=34.4
Q ss_pred ccccccch-hHHHHHHHHHhcCCC--CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 108 ETLVGEKT-KKVVEIIWENLMGDK--APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 108 ~~~vGr~~-~~~~~~l~~~l~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..++|.+. .+.+..+++.+..+. .+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 57899843 122334455554443 3689999999999999999999986
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.97 E-value=0.012 Score=60.86 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCC---CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 118 VVEIIWENLMGD---KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 118 ~~~~l~~~l~~~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
..+.+.+++... ....+.|+|++|+|||+||+.+++...... ...+.++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 344444555431 257899999999999999999999873122 234556654
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.89 E-value=0.024 Score=59.74 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC----CccHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE----NEDKVSRAGRLL 205 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~ 205 (837)
.-+++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++.+... ..........+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 3589999999999999999999877632 23468999987766643 24555543211 011122223333
Q ss_pred HHHh-cCCeEEEEEeCCCC
Q 038611 206 GMLK-AKAKFVLILDDMWE 223 (837)
Q Consensus 206 ~~l~-~~k~~LlVlDdv~~ 223 (837)
+.+. ..+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 3332 34567899999854
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.88 E-value=0.012 Score=69.49 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=37.5
Q ss_pred cccccchhHHHHHHHHHhcC---------CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLMG---------DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|. +..++.+...+.. .....+.++|++|+|||++|+.+++.. . ...+.++++.
T Consensus 459 ~v~g~--~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~---~~~~~i~~s~ 523 (758)
T 1r6b_X 459 LVFGQ--DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G---IELLRFDMSE 523 (758)
T ss_dssp TSCSC--HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T---CEEEEEEGGG
T ss_pred hccCH--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c---CCEEEEechh
Confidence 57787 5555555554431 112378999999999999999999875 1 2345555544
No 248
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.87 E-value=0.018 Score=60.13 Aligned_cols=101 Identities=10% Similarity=0.112 Sum_probs=54.9
Q ss_pred HHHHhc-CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCCCCCCccHHH
Q 038611 122 IWENLM-GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKESLPENEDKVS 199 (837)
Q Consensus 122 l~~~l~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~ 199 (837)
+++.+. -..-..++|+|.+|+|||||++.+.+........++ ++++-+++... ..++.+.+-..+-....+......
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r 242 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRH 242 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHH
Confidence 344443 345689999999999999999999887633223343 44677887543 233322220000001111111111
Q ss_pred -----HHHHHHHHH-hcCCeEEEEEeCCCC
Q 038611 200 -----RAGRLLGML-KAKAKFVLILDDMWE 223 (837)
Q Consensus 200 -----~~~~l~~~l-~~~k~~LlVlDdv~~ 223 (837)
....+.+.+ ..++..||++||+-.
T Consensus 243 ~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 243 VQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111122222 268999999999854
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.82 E-value=0.028 Score=59.44 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC----CccHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE----NEDKVSRAGRLL 205 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~ 205 (837)
...++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++.+... .....+.+..+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3479999999999999999999887632 22468999988766643 24455543210 011122222333
Q ss_pred HHHh-cCCeEEEEEeCCCC
Q 038611 206 GMLK-AKAKFVLILDDMWE 223 (837)
Q Consensus 206 ~~l~-~~k~~LlVlDdv~~ 223 (837)
+.+. ....-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 3333 34456899999854
No 250
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.79 E-value=0.024 Score=59.73 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC----CccHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE----NEDKVSRAGRLL 205 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~ 205 (837)
..+++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++.+... ..+....+..+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 3579999999999999999999887632 22468999987776643 24455443211 011122223333
Q ss_pred HHHh-cCCeEEEEEeCCCC
Q 038611 206 GMLK-AKAKFVLILDDMWE 223 (837)
Q Consensus 206 ~~l~-~~k~~LlVlDdv~~ 223 (837)
+.+. ..+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 3332 34566899999753
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.78 E-value=0.0085 Score=58.23 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 117 KVVEIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 117 ~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+++|.+.+.. ....+|+|+|+.|.|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666666653 356799999999999999999999876
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.76 E-value=0.068 Score=57.20 Aligned_cols=93 Identities=10% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC---------CCcc-
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALKESLP---------ENED- 196 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~- 196 (837)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....++..++. .+++.++.... ....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 34799999999999999999876432111 1123568999877666555433 35555553210 0111
Q ss_pred --HHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 038611 197 --KVSRAGRLLGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 197 --~~~~~~~l~~~l~~~k~~LlVlDdv~~ 223 (837)
....+.++...+...+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 112233334444445788899998743
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.66 E-value=0.03 Score=55.21 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
-.+++|+|.+|+|||||++.++...... -..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 4799999999999999999999765322 12466766443
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.65 E-value=0.031 Score=66.03 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHh
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLK 209 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 209 (837)
....|.|+|++|+||||||+.+++.. ... .+.++.++ +.... .......+..+.+...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l---~~~---~i~v~~~~--------------l~~~~--~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE--------------IMSKL--AGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT---TCE---EEEEEHHH--------------HSSSS--TTHHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc---CCc---EEEEEchH--------------hhhhh--hhhHHHHHHHHHHHHH
Confidence 35689999999999999999998764 111 23443211 11111 1122233344444444
Q ss_pred cCCeEEEEEeCCCCCcc----------------ccccccCCCCCCCCcEEEEEeCChhHh-hhC----Ccce-EEeccCC
Q 038611 210 AKAKFVLILDDMWEAFP----------------LEKVGIPEPNKENGCKLVITTRSYRVC-RSM----KCKQ-VEVELLS 267 (837)
Q Consensus 210 ~~k~~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~s~iivTtR~~~v~-~~~----~~~~-~~l~~L~ 267 (837)
...+.++++|+++.... +..+..... ......||.||...... ... .... +.+...+
T Consensus 295 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~ 373 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCC
T ss_pred hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCCCC
Confidence 45688999999953210 001111111 12334555566553321 111 2223 6788888
Q ss_pred HHhHHHHHHHHhCC
Q 038611 268 KEEAFNLFIDRVGS 281 (837)
Q Consensus 268 ~~~~~~Lf~~~~~~ 281 (837)
.++-.+++...+..
T Consensus 374 ~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 374 ATGRLEILQIHTKN 387 (806)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888766543
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.62 E-value=0.051 Score=55.15 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=67.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAK 211 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 211 (837)
+-+.|+|++|.||||||+.++... . . ..+++..++-.+. ........+..+.+.....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhc
Confidence 449999999999999999999865 1 1 2445543321110 0001112223333333234
Q ss_pred CeEEEEEeCCCCCcc---------c----cccccCCCC--CCCCcEEEEEeCChhHhhh-----CCcce-EEeccCCHHh
Q 038611 212 AKFVLILDDMWEAFP---------L----EKVGIPEPN--KENGCKLVITTRSYRVCRS-----MKCKQ-VEVELLSKEE 270 (837)
Q Consensus 212 k~~LlVlDdv~~~~~---------~----~~l~~~~~~--~~~~s~iivTtR~~~v~~~-----~~~~~-~~l~~L~~~~ 270 (837)
.+.++++|+++.... . ..+...+.+ .....-++.+|..+++... ..... +.++..+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 678999999974211 0 001111111 1223345556666554211 12233 7778888888
Q ss_pred HHHHHHHHhC
Q 038611 271 AFNLFIDRVG 280 (837)
Q Consensus 271 ~~~Lf~~~~~ 280 (837)
-.++++....
T Consensus 183 r~~il~~~~~ 192 (274)
T 2x8a_A 183 RLAILKTITK 192 (274)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8888876653
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.62 E-value=0.0079 Score=72.00 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=38.1
Q ss_pred cccccchhHHHHHHHHHhcC------C---CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 109 TLVGEKTKKVVEIIWENLMG------D---KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~------~---~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|. +..++.+...+.. + ....+.|+|+.|+|||++|+.+++...... ...+.++++.
T Consensus 559 ~viG~--~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTE 626 (854)
T ss_dssp HSCSC--HHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTT
T ss_pred ccCCc--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechh
Confidence 46787 4555555554421 1 124789999999999999999998763211 2245555554
No 257
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.46 E-value=0.055 Score=53.17 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhh--cC-CCCeEEEEEeCCCcCH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKE--TN-KFNVVIWVTVSQPLDL 176 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~-~f~~~~wv~vs~~~~~ 176 (837)
-.+++|+|+.|+|||||++.++...... .. ....++|+........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4799999999999999999998743111 11 2345788876554343
No 258
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.40 E-value=0.034 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+-+.|+|++|+||||||+.++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 348999999999999999999875
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.36 E-value=0.095 Score=53.49 Aligned_cols=55 Identities=16% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 183 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 183 (837)
....+|+|+|..|+||||||+.+.............+..|+...-.-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 3567999999999999999999988763321112334444544333233333444
No 260
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.35 E-value=0.05 Score=58.81 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcC-------CCCCCccHHH---
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKE-------SLPENEDKVS--- 199 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~--- 199 (837)
-..++|+|.+|+||||||+.+...... ...+.++++.+++..+ ..++..++...-.. ..........
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~ 228 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRV 228 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHH
Confidence 357999999999999999999987532 2234567777777553 44455545332000 0011111111
Q ss_pred --HHHHHHHHHh--cCCeEEEEEeCCCC
Q 038611 200 --RAGRLLGMLK--AKAKFVLILDDMWE 223 (837)
Q Consensus 200 --~~~~l~~~l~--~~k~~LlVlDdv~~ 223 (837)
....+.+.+. .+++.|+++||+..
T Consensus 229 ~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 229 ALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123344443 48999999999953
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.22 E-value=0.063 Score=55.04 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKESLPENEDKVSRAGRLLGML 208 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 208 (837)
...+++|+|.+|+||||++..++....... ...+..+.... .....+.+....+..+.+.....+. ..+...+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~-~~l~~al~~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTK-EEFQQAKELF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSH-HHHHHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCH-HHHHHHHHHh
Confidence 457999999999999999999998763212 23456665432 2233333444444344332111121 1222222222
Q ss_pred hcCCeEEEEEeCC
Q 038611 209 KAKAKFVLILDDM 221 (837)
Q Consensus 209 ~~~k~~LlVlDdv 221 (837)
.+.=++|+|-.
T Consensus 181 --~~~dlvIiDT~ 191 (296)
T 2px0_A 181 --SEYDHVFVDTA 191 (296)
T ss_dssp --GGSSEEEEECC
T ss_pred --cCCCEEEEeCC
Confidence 23457788843
No 262
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.19 E-value=0.028 Score=62.03 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=33.5
Q ss_pred Cccccccch-hHHHHHHHHHhcCC---------CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 107 TETLVGEKT-KKVVEIIWENLMGD---------KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 107 ~~~~vGr~~-~~~~~~l~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...++|.+. ...+.++...+... -.+-+.|+|++|+||||||+.+++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347888743 23344444444321 13458999999999999999999875
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.19 E-value=0.012 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.19 E-value=0.11 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999877
No 265
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.18 E-value=0.0052 Score=55.68 Aligned_cols=45 Identities=9% Similarity=0.136 Sum_probs=28.3
Q ss_pred cccccchhHHHHHHHHHhcC--CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMG--DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|++ ..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s--~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNS--AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCC--HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCC--HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467873 344445444321 223447799999999999999987753
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.07 E-value=0.013 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998865
No 267
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.00 E-value=0.015 Score=55.89 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|+|+.|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999999875
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.98 E-value=0.097 Score=53.78 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHH--HHHHHHHHHhcCCC---CCCccHHHH-HHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI--KLQTEIATALKESL---PENEDKVSR-AGRL 204 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 204 (837)
..+|+|+|.+|+||||++..++..... . -..+.++... .+... +-+...++..+.+. ....+.... ...+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~-~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD-E--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh-c--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 469999999999999999999987732 1 2345555543 33322 22334555554321 111122111 1233
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 038611 205 LGMLKAKAKFVLILDDMW 222 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv~ 222 (837)
...+ ....-++|+|-.-
T Consensus 180 ~~a~-~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHAL-ARNKDVVIIDTAG 196 (306)
T ss_dssp HHHH-HTTCSEEEEEECC
T ss_pred HHHH-hcCCCEEEEECCC
Confidence 3333 3344477888653
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.96 E-value=0.023 Score=54.81 Aligned_cols=40 Identities=18% Similarity=0.447 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcC---CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 116 KKVVEIIWENLMG---DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 116 ~~~~~~l~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+..++.+.+.+.. ....+|+|+|..|+||||+++.+....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666666543 345799999999999999999998865
No 270
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.87 E-value=1.2 Score=48.60 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
...++.|.|.+|+||||||..++...... .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 34799999999999999999999876322 223578887543 3455555543
No 271
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.84 E-value=0.091 Score=56.61 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC--HHHHHHHHHHHhcCCCC---CCccHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKESLP---ENEDKVSRAGRLL 205 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 205 (837)
..+|.++|.+|+||||++..++..... . -..+..++.. .+. ..+-+.......+.+.. ...+.........
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~-~--G~kVllv~~D-~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK-R--GYKVGLVAAD-VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH-T--TCCEEEEEEC-CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEecC-ccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 579999999999999999999988732 2 2345555543 232 22333444444443221 1122222222333
Q ss_pred HHHhcCCeEEEEEeCCC
Q 038611 206 GMLKAKAKFVLILDDMW 222 (837)
Q Consensus 206 ~~l~~~k~~LlVlDdv~ 222 (837)
..+.....=++|+|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 33322233455677654
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.79 E-value=0.018 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.017 Score=54.61 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 274
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.75 E-value=0.15 Score=54.92 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCC------C------CCCc
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKES------L------PENE 195 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~------~------~~~~ 195 (837)
.+-.-++|.|.+|+|||+|++++.+... +.+-+.++++-+++... ..++.+++...=..+ . ....
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~ 228 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNE 228 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTS
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCC
Confidence 3457899999999999999999988742 23456788888887654 566667776542221 0 0111
Q ss_pred cHH------HHHHHHHHHHh--cCCeEEEEEeCCC
Q 038611 196 DKV------SRAGRLLGMLK--AKAKFVLILDDMW 222 (837)
Q Consensus 196 ~~~------~~~~~l~~~l~--~~k~~LlVlDdv~ 222 (837)
... .....+.+.+. +++..||++||+-
T Consensus 229 p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 229 PPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111 11223344443 4899999999984
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.72 E-value=0.14 Score=52.99 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
.-.++.|.|.+|+||||||.+++..... .+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3479999999999999999999877522 22 578888765 4556666665544
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.69 E-value=0.016 Score=54.31 Aligned_cols=20 Identities=35% Similarity=0.430 Sum_probs=18.9
Q ss_pred CEEEEEcCCCChHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEI 151 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v 151 (837)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 277
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.60 E-value=0.024 Score=55.68 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 119 VEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 119 ~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444444567899999999999999999998875
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.58 E-value=0.019 Score=55.39 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998875
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.58 E-value=0.023 Score=54.71 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999999999999999998764
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.58 E-value=0.02 Score=55.12 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 128 GDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 128 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.....+|+|+|+.|.||||+|+.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999876
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.58 E-value=0.12 Score=51.19 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.-.++.|.|.+|+||||||.+++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3479999999999999999988776522 234578887554
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.56 E-value=0.018 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 283
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.49 E-value=0.066 Score=47.28 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=37.6
Q ss_pred EEEccccCCC--CCCCCCCCCCCcccEEEccCCcCccccChhHhhcCCCCcEEEecCCCC
Q 038611 470 RVSLMMNDID--EIPSNMSPHCEILSTLLLQRNINLQWIPECFFAHMHGLKILNLSFTAI 527 (837)
Q Consensus 470 ~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 527 (837)
.++.+++.++ .+|..+. ++|+.|+|++| .+..+|..+|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 5566666666 6665432 45777788777 67777777777777788888777764
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.41 E-value=0.024 Score=53.49 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998775
No 285
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.40 E-value=0.019 Score=54.28 Aligned_cols=116 Identities=21% Similarity=0.118 Sum_probs=60.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC---CcCHHHHHHHHHH---HhcCCC-CCCcc-------H
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQTEIAT---ALKESL-PENED-------K 197 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~---~~~~~~~~~~i~~---~l~~~~-~~~~~-------~ 197 (837)
..|-|++..|.||||.|-.+.-.. ..+...+.++..-. ..+...++..+.- +.+... ....+ .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 566666667799999999988765 23444566665433 2233344433310 000000 01111 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCC-----CccccccccCCCCCCCCcEEEEEeCCh
Q 038611 198 VSRAGRLLGMLKAKAKFVLILDDMWE-----AFPLEKVGIPEPNKENGCKLVITTRSY 250 (837)
Q Consensus 198 ~~~~~~l~~~l~~~k~~LlVlDdv~~-----~~~~~~l~~~~~~~~~~s~iivTtR~~ 250 (837)
........+.+..++-=|||||++-. ....+++...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 11222334444345667999999842 222233322222334466899999995
No 286
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.38 E-value=0.61 Score=50.85 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=37.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++.|.|.+|+||||+|..++..... ..-..++|++.. .+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 479999999999999999999987632 123457887664 3455666665543
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.37 E-value=0.33 Score=50.38 Aligned_cols=56 Identities=25% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhc
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALK 188 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~ 188 (837)
...+++|+|+.|+||||+++.++...... . ..+.++...- .....+-+....+.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~-g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH--G-FSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT--T-CCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--C-CEEEEEeecccccchHHHHHHHHHHcC
Confidence 46799999999999999999999876322 2 2345554332 1233444455556655
No 288
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.36 E-value=0.16 Score=54.92 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CcCHHHHHHHHHHHhc
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALK 188 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~ 188 (837)
.+++|.++|.+|+||||+|..++..... . ....+.-|+... .......+.......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~ 156 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE-K-HKKKVLVVSADVYRPAAIKQLETLAEQVG 156 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH-T-SCCCEEEEECCCSSTTHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-h-cCCeEEEEecCCCCccHHHHHHhhcccCC
Confidence 3579999999999999999999988732 2 123456666543 2233333333444444
No 289
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.36 E-value=0.1 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-.+++|+|+.|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999843
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.36 E-value=0.022 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINN 153 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~ 153 (837)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 291
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.024 Score=55.52 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 118 VVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 118 ~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+.+...+.....++|+|+|.+|+|||||+..+....
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555544567899999999999999999998875
No 292
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.35 E-value=0.021 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999764
No 293
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.33 E-value=0.14 Score=55.53 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHHHHHhcCC--------------CCC
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKES--------------LPE 193 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i~~~l~~~--------------~~~ 193 (837)
.+-.-++|.|.+|+|||+|+.++.+... +.+-+.++++-+++... ..++.+++...=..+ ..+
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d 240 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 240 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTT
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCC
Confidence 3457899999999999999999998742 23457889999988764 556666665532111 011
Q ss_pred Ccc-----HHHHHHHHHHHHh--cCCeEEEEEeCCC
Q 038611 194 NED-----KVSRAGRLLGMLK--AKAKFVLILDDMW 222 (837)
Q Consensus 194 ~~~-----~~~~~~~l~~~l~--~~k~~LlVlDdv~ 222 (837)
... .......+.+.+. +++..|+++||+-
T Consensus 241 ~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 241 EPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp SCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111 1122223444554 3789999999984
No 294
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.30 E-value=0.27 Score=51.09 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
..++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 479999999999999999999987633 33567777653 4556666666544
No 295
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.25 E-value=0.027 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.25 E-value=0.024 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998875
No 297
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.24 E-value=0.12 Score=53.00 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH--HHHHHHHHhcCCCC---CCccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK--LQTEIATALKESLP---ENEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~---~~~~~~~~~~~l 204 (837)
...+++|+|.+|+||||++..++..... . -..+.++... ...... .+..+.+..+...- ...+........
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~--~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-K--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-T--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 3469999999999999999999987632 2 2335555543 222222 23344444443221 112222222333
Q ss_pred HHHHhcCCeEEEEEeCC
Q 038611 205 LGMLKAKAKFVLILDDM 221 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv 221 (837)
+..+.....=+||+|-.
T Consensus 173 l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 173 EEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 44442233446777876
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.24 E-value=0.029 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998875
No 299
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.21 E-value=0.12 Score=54.36 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCeEEEEEeCCCcCHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~---f~~~~wv~vs~~~~~~~ 178 (837)
.-.++.|+|+.|+|||||+..++......... -..++|++....+...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 35799999999999999999998764111111 13568998766544333
No 300
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.21 E-value=0.1 Score=53.39 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC-cCHHHHHHHHHHHhcCCC---CCCccHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKESL---PENEDKVSRAGRLLG 206 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 206 (837)
..+++++|.+|+||||++..++..... .-..+.++..... ......++...+..+.+. ....+....+...++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 568999999999999999999987732 2234666665432 222333444555554432 111233333334445
Q ss_pred HHhcCCeEEEEEeCC
Q 038611 207 MLKAKAKFVLILDDM 221 (837)
Q Consensus 207 ~l~~~k~~LlVlDdv 221 (837)
.+....-=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 543222236677765
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.17 E-value=0.033 Score=51.54 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46899999999999999999999876
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.15 E-value=0.03 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345799999999999999999998764
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.14 E-value=0.028 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999886
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.13 E-value=0.027 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.09 E-value=0.029 Score=53.52 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.09 E-value=0.032 Score=52.95 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|.|++|+||||+|+.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999886
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.07 E-value=0.028 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.05 E-value=0.027 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 309
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.04 E-value=0.034 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998765
No 310
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.04 E-value=0.36 Score=53.12 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=27.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
.++|+|+|.+|+||||++..++..... . -..+..|+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~-~--G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR-K--GWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-C--CCeEEEEec
Confidence 569999999999999999999987732 2 234556655
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.03 E-value=0.077 Score=53.15 Aligned_cols=127 Identities=11% Similarity=0.133 Sum_probs=66.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhcC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKAK 211 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 211 (837)
+-+.|+|++|+||||||+.+++.. . ...+.+... .+ ... . .......+..+.+.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~-~-----~~~i~~~~~------~~----~~~----~--~~~~~~~i~~~~~~~~~~ 107 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------DF----VEM----F--VGVGAARVRDLFETAKRH 107 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------HH----HHS----C--TTHHHHHHHHHHHHHTTS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-C-----CCEEEeeHH------HH----HHH----H--hhHHHHHHHHHHHHHHhc
Confidence 348999999999999999999875 1 122333321 11 110 0 011122233344444334
Q ss_pred CeEEEEEeCCCCCc------------c----ccccccCCCCC--CCCcEEEEEeCChhHhhh-----CCcce-EEeccCC
Q 038611 212 AKFVLILDDMWEAF------------P----LEKVGIPEPNK--ENGCKLVITTRSYRVCRS-----MKCKQ-VEVELLS 267 (837)
Q Consensus 212 k~~LlVlDdv~~~~------------~----~~~l~~~~~~~--~~~s~iivTtR~~~v~~~-----~~~~~-~~l~~L~ 267 (837)
.+.++++|+++... . ...+...+..+ .....++.||...++... ..... +.+...+
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 187 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCC
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcC
Confidence 56899999984210 0 11111111111 122344456666554211 12233 7888888
Q ss_pred HHhHHHHHHHHhC
Q 038611 268 KEEAFNLFIDRVG 280 (837)
Q Consensus 268 ~~~~~~Lf~~~~~ 280 (837)
.++-.+++...+.
T Consensus 188 ~~~r~~il~~~~~ 200 (254)
T 1ixz_A 188 VKGREQILRIHAR 200 (254)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 8887777776553
No 312
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.99 E-value=0.081 Score=46.69 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=41.1
Q ss_pred CEEeccCCcCc--cccccccCCCCCCEEeccCCCCCCCCCCcccCCccCcEEEccc
Q 038611 564 QHLDLRGTSIE--EVPEGMQMLENLSHLYLYSPPLKELPAGLLPRLRKLCRLSLYF 617 (837)
Q Consensus 564 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~~p~~~l~~l~~L~~L~l~~ 617 (837)
..++-++++++ .+|.++. ++|++|+|++|.++.+|.+.|..+++|+.|+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 36777777777 7886543 4689999999999999988888888999998843
No 313
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.99 E-value=0.028 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|+|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998865
No 314
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.98 E-value=0.056 Score=57.51 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=32.8
Q ss_pred cccccchhHHHHHHHHHhc-------------C--CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLM-------------G--DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. +..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQ--EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSC--HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCH--HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35787 555666655551 1 134678999999999999999999875
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.95 E-value=0.034 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.94 E-value=0.033 Score=53.66 Aligned_cols=23 Identities=48% Similarity=0.796 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.91 E-value=0.037 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 318
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.91 E-value=0.14 Score=65.26 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC-----CccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE-----NEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l 204 (837)
..+.+.|+|++|+|||+||.++..... ..-..++|+++...++... ++.++.+... ..........+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 468999999999999999999988763 2345688888887776655 4455533211 11122223333
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 038611 205 LGMLKAKAKFVLILDDMW 222 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv~ 222 (837)
.+.....+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 333345678899999985
No 319
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.88 E-value=0.052 Score=56.69 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHhcC-CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCc
Q 038611 121 IIWENLMG-DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 174 (837)
Q Consensus 121 ~l~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~ 174 (837)
++++.+.. ..-.-++|+|.+|+|||+|++++.+........+. ++++-+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 44555543 45678999999999999999999987633223333 3567777643
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.88 E-value=0.033 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998875
No 321
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.87 E-value=0.036 Score=52.11 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.85 E-value=0.039 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 46899999999999999999998764
No 323
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.83 E-value=0.055 Score=56.23 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=29.9
Q ss_pred hHHHHHHHHHh----cCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 116 KKVVEIIWENL----MGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 116 ~~~~~~l~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+..++.+++.+ ..+....|.|+|+.|+||||+++.++...
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 33445554444 34556679999999999999999998876
No 324
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.82 E-value=0.032 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.|.|+|++|+|||||++++....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998764
No 325
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.81 E-value=0.32 Score=52.30 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH--HHHHHHHHhcC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK--LQTEIATALKE 189 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~--~~~~i~~~l~~ 189 (837)
..+|.|+|.+|+||||++..++..... .-..+..+.. +.+.... .+.......+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~---~g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAA-DTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEEC-CSSCHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEeec-cccCchhHHHHHHhcccCCc
Confidence 568999999999999999999988732 2233555554 3344332 23444455543
No 326
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.79 E-value=0.034 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.78 E-value=0.036 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.77 E-value=0.036 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINN 153 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~ 153 (837)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 329
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.77 E-value=0.031 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.77 E-value=0.04 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 331
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.76 E-value=0.036 Score=53.82 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+.++|.|.|++|+||||.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999876
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.75 E-value=0.04 Score=53.14 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.73 E-value=0.035 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINN 153 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~ 153 (837)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 334
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.73 E-value=0.042 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+..+|+|+|+.|+|||||++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 335
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.68 E-value=0.064 Score=55.43 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
++.+||+|.|-|||||||.|..++.-+.+ ....+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~---~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 46799999999999999999999888732 233467777654
No 336
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.67 E-value=0.068 Score=57.17 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999865
No 337
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.66 E-value=0.04 Score=57.81 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=33.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|+ +..++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 28 ~i~g~--~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 28 VVVGQ--KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCSC--HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ceeCc--HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 56887 55666666666543 468899999999999999998865
No 338
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.66 E-value=0.038 Score=58.45 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=32.6
Q ss_pred CccccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 107 TETLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 107 ~~~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-..++|. +..++.+..........-+.|+|++|+|||++|+.+++..
T Consensus 23 f~~i~G~--~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQ--EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSC--HHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccCh--HHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3468898 3344444333333333448999999999999999999875
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.58 E-value=0.042 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 340
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.58 E-value=0.029 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEIN 152 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~ 152 (837)
..+++|+|+.|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 341
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.57 E-value=0.033 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.55 E-value=0.043 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..|+|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.51 E-value=0.043 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 344
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.51 E-value=0.039 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
....+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999998763
No 345
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.48 E-value=0.039 Score=53.48 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|+.|.|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.43 E-value=0.057 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.|.|+.|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 347
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.42 E-value=0.079 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+++|+|++|+||||+++.++.-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.40 E-value=0.048 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 349
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.35 E-value=0.057 Score=55.16 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.30 E-value=0.044 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 351
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.30 E-value=0.047 Score=52.79 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34799999999999999999998764
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.29 E-value=0.049 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=22.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.28 E-value=0.12 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 354
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.26 E-value=0.057 Score=52.32 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCe
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 164 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~ 164 (837)
..+|+|.|+.|+||||+|+.+..... ...++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998762 234554
No 355
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.25 E-value=0.057 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 356
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.23 E-value=0.042 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
..+|+|+|+.|.||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.23 E-value=0.052 Score=51.72 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 358
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.21 E-value=0.043 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998754
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.21 E-value=0.058 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.20 E-value=0.043 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINN 153 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~ 153 (837)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 361
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.14 E-value=0.054 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 362
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.11 E-value=0.038 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++++|+|..|+|||||++.+..-+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 363
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.10 E-value=0.15 Score=54.65 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCC----eEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCccH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFN----VVIWVTVSQPL-DLIKLQTEIATALKE-------SLPENEDK 197 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~----~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~ 197 (837)
+-.-++|.|..|+|||+|+.++++.. ..+.+ .++++-+++.. ...++.+++...=.. ...+....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~ 226 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAI 226 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHH
Confidence 34567899999999999999998874 22223 67788787654 455666665443111 11111111
Q ss_pred H-----HHHHHHHHHHh--cCCeEEEEEeCCC
Q 038611 198 V-----SRAGRLLGMLK--AKAKFVLILDDMW 222 (837)
Q Consensus 198 ~-----~~~~~l~~~l~--~~k~~LlVlDdv~ 222 (837)
. .....+.+.+. .++..|+++||+-
T Consensus 227 ~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 227 ERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1 11223455554 3899999999984
No 364
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.09 E-value=0.055 Score=51.51 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+|+|+|+.|+||||+|+.+....
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.09 E-value=0.057 Score=52.85 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999876
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.07 E-value=0.055 Score=49.64 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44699999999999999999999865
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.04 E-value=0.052 Score=54.33 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|+.|+||||+++.++..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.00 E-value=0.058 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 369
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.97 E-value=0.037 Score=53.96 Aligned_cols=112 Identities=16% Similarity=-0.020 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCC--ccHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPEN--EDKVSRAGRLLGM 207 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~ 207 (837)
...++.|+|..|.||||+|..+.+.... ....++.+....... ....+++.++...... .........+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 3478999999999999999999887622 223345554332211 1123444444332211 1111112222211
Q ss_pred HhcCCeEEEEEeCCCCC--ccccccccCCCCCCCCcEEEEEeCCh
Q 038611 208 LKAKAKFVLILDDMWEA--FPLEKVGIPEPNKENGCKLVITTRSY 250 (837)
Q Consensus 208 l~~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~~s~iivTtR~~ 250 (837)
...++.-+||+|.+..- +..+.+. .+. ..|..||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA--ENGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH--hCCCeEEEEeccc
Confidence 21234559999999742 2222221 111 1266788888864
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.91 E-value=0.061 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 371
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.89 E-value=0.071 Score=49.73 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++++|+|..|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999999876
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.88 E-value=0.037 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999876
No 373
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.86 E-value=0.059 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999998764
No 374
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.85 E-value=0.11 Score=49.39 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHHHhcCC-CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 119 VEIIWENLMGD-KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 119 ~~~l~~~l~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+..+..++.+- +-..+.|+|++|.||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555555431 22479999999999999999999876
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.84 E-value=0.055 Score=55.93 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 171 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 171 (837)
....+|+|+|..|+|||||++.+..-.....+. ..+.+|.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-PRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-CeEEEEecC
Confidence 345799999999999999999998876321111 235566543
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.81 E-value=0.057 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|.|+.|.|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998764
No 377
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.80 E-value=0.061 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998763
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.78 E-value=0.062 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998765
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.66 E-value=0.063 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999865
No 380
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.60 E-value=0.2 Score=52.85 Aligned_cols=37 Identities=24% Similarity=0.537 Sum_probs=28.8
Q ss_pred HHHHHHHhc--CCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 119 VEIIWENLM--GDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 119 ~~~l~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...++..+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443 3567899999999999999999998876
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.55 E-value=0.062 Score=53.78 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998864
No 382
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.53 E-value=0.071 Score=58.83 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=33.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|+ +..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 23 ~ivGq--~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSC--HHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHH--HHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 46887 55666666655443 478899999999999999998865
No 383
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.47 E-value=0.078 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.45 E-value=0.077 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|.|++|.||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 385
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.43 E-value=0.54 Score=52.24 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 186 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 186 (837)
-.++.|.|.+|+||||||.+++..... .+-..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 479999999999999999999987622 1234678887644 455666665443
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.42 E-value=0.073 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 387
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.41 E-value=0.08 Score=51.02 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998865
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.33 E-value=0.083 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.27 E-value=0.083 Score=51.18 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999876
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.27 E-value=0.085 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998876
No 391
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.25 E-value=0.13 Score=53.03 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 038611 128 GDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 173 (837)
Q Consensus 128 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 173 (837)
....++|+|+|-||+||||+|..++....+. ...++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCCC
Confidence 3467899999999999999999999887432 335777776543
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.25 E-value=0.093 Score=54.19 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.+|+|.|..|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35599999999999999999998765
No 393
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.22 E-value=0.21 Score=49.55 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 182 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 182 (837)
-.++.|.|.+|+|||++|.+++..... .....+++++... +..++.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~--~~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSS--CHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCceeecccC--CHHHHHHH
Confidence 479999999999999999997654312 1223467776543 34444433
No 394
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.12 E-value=0.096 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+-|.++|++|+||||+|+.++...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999875
No 395
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.06 E-value=0.089 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 396
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.05 E-value=0.1 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+++|+|+.|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999876
No 397
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.05 E-value=0.056 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=16.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHH-HHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEIN-NRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~-~~~ 155 (837)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4799999999999999999998 654
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.01 E-value=0.089 Score=52.06 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.. .+++|+|+.|.|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 899999999999999999988653
No 399
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.97 E-value=0.083 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999998865
No 400
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.95 E-value=0.22 Score=52.22 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=35.0
Q ss_pred hcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC
Q 038611 126 LMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 175 (837)
Q Consensus 126 l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 175 (837)
+.+...+++.+.|-||+||||+|..++..... ...-..+.-|+.....+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCC
Confidence 34556789999999999999999999987731 02334567777654433
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.93 E-value=0.094 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998875
No 402
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.92 E-value=0.13 Score=53.22 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
...+|+|+|.+|+||||++..++..... .-..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 3579999999999999999999987732 2234555543
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.91 E-value=0.086 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINN 153 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~ 153 (837)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.89 E-value=0.11 Score=51.10 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|.|+.|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.85 E-value=0.25 Score=50.61 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 185 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~ 185 (837)
.-.+++|+|.+|+|||||++.++...... ....++|+.... +..++...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 34799999999999999999999876322 122466765433 33444444433
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.82 E-value=0.099 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.81 E-value=0.099 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 408
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.77 E-value=0.077 Score=51.96 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999887643
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.77 E-value=0.079 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34799999999999999999887643
No 410
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.72 E-value=0.066 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998865
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.71 E-value=0.089 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEIN 152 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~ 152 (837)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 412
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.66 E-value=0.63 Score=50.59 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 184 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 184 (837)
...++.|.|.+|+||||+|.+++...... -..++|++... +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC--CHHHHHHHHH
Confidence 34799999999999999999999876322 34678876543 3334444443
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.63 E-value=0.41 Score=60.99 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLP-----ENEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 204 (837)
..+++.|+|.+|+||||||.+++..... .-..++|++.....+... ++.++.+.. ......+....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 4589999999999999999999987632 234689998877666432 556665422 112222222222
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 038611 205 LGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv~~ 223 (837)
.......+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 2222245677999999854
No 414
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.60 E-value=0.13 Score=58.69 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=35.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 109 TLVGEKTKKVVEIIWENLMGDKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 109 ~~vGr~~~~~~~~l~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|. +..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~--~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQ--EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSC--HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECc--hhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 68887 55666666666655 588999999999999999999865
No 415
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.56 E-value=0.1 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 416
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.53 E-value=0.078 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-.+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999876
No 417
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.46 E-value=0.09 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998754
No 418
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.46 E-value=0.099 Score=54.05 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+|+|+|..|.|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.40 E-value=0.091 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999998654
No 420
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.40 E-value=0.25 Score=51.39 Aligned_cols=48 Identities=27% Similarity=0.266 Sum_probs=35.1
Q ss_pred hcCCCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCH
Q 038611 126 LMGDKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL 176 (837)
Q Consensus 126 l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 176 (837)
+.+...+++.+.|-||+||||+|..++.... .....++-|+.....++
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCCh
Confidence 3445578899999999999999999998773 23345777776644433
No 421
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.34 E-value=0.25 Score=47.77 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=26.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.|.+.|.||+||||+|..++..... ..++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~--~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR--QGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCC-EEEEEeCC
Confidence 4788999999999999999988632 2233 44555544
No 422
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.29 E-value=0.21 Score=50.71 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcC-------CCCeEEEEEeCCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETN-------KFNVVIWVTVSQP 173 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-------~f~~~~wv~vs~~ 173 (837)
-.++.|+|.+|+||||||..++........ .-..+++++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 479999999999999999999876522100 0134667766553
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.28 E-value=0.11 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.9
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998864
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.24 E-value=0.093 Score=54.21 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998764
No 425
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.23 E-value=0.11 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-.+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999999873
No 426
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.22 E-value=0.14 Score=53.67 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+++|+|+.|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999999876
No 427
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.21 E-value=0.095 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999999999987643
No 428
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.20 E-value=0.19 Score=54.16 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCc-CHHHHHHHHHHHhcCC-------CCCCccH---
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQPL-DLIKLQTEIATALKES-------LPENEDK--- 197 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 197 (837)
+-.-++|.|.+|+|||+|+.++++...... +.-+.++++-+++.. ...++.+++...=..+ ..+....
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 446778899999999999999998752111 112467888887655 3556666665431111 1111111
Q ss_pred --HHHHHHHHHHHh--cCCeEEEEEeCCC
Q 038611 198 --VSRAGRLLGMLK--AKAKFVLILDDMW 222 (837)
Q Consensus 198 --~~~~~~l~~~l~--~~k~~LlVlDdv~ 222 (837)
......+.+.+. +++..||++||+-
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 112223444454 5899999999973
No 429
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.14 E-value=0.096 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-.+++|+|+.|.|||||++.+..-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3479999999999999999988754
No 430
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.13 E-value=0.58 Score=51.20 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcC-HHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEI 183 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 183 (837)
.+-..++|.|..|+|||+|++++++. .+-+.++++-+++..+ ..++.+++
T Consensus 225 gkGqr~~I~g~~g~GKT~L~~~ia~~-----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 225 AKGGTAAIPGPAGSGKTVTQHQLAKW-----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp ETTCEEEECSCCSHHHHHHHHHHHHH-----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred ccCCeEEeecCCCCCHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 34578999999999999999998764 2346788999988765 44555554
No 431
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.12 E-value=0.089 Score=50.98 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 432
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.05 E-value=0.1 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999987643
No 433
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.05 E-value=0.13 Score=51.77 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999876
No 434
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.01 E-value=0.12 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-.+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999874
No 435
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.99 E-value=0.12 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 436
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.98 E-value=0.1 Score=52.32 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999987643
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.97 E-value=0.39 Score=47.15 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEE
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 168 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv 168 (837)
...|.|.|+.|+||||+++.+.+... ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 47999999999999999999998873 2345534444
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.95 E-value=0.11 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999998754
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.91 E-value=0.22 Score=48.77 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|+|.|+.|+||||+++.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.91 E-value=0.11 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999987643
No 441
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.90 E-value=0.11 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35799999999999999999988653
No 442
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.90 E-value=0.13 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.6
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.86 E-value=0.13 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.85 E-value=0.11 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999987653
No 445
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.78 E-value=0.26 Score=49.64 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=29.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
++|+|.|-||+||||+|..++....+ ....++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~---~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA---MGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH---CCCcEEEEcCCC
Confidence 57888999999999999999988732 233567776653
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.71 E-value=0.13 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 447
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.68 E-value=0.35 Score=56.25 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHhc
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPENEDKVSRAGRLLGMLKA 210 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 210 (837)
.+-|.++|++|.|||.+|+++++.. .. -++.++. . .+...... .....+.++.+....
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~----~--------~l~s~~vG--ese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG----P--------ELLTMWFG--ESEANVREIFDKARQ 568 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----H--------HHHTTTCS--SCHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----c--------hhhccccc--hHHHHHHHHHHHHHH
Confidence 4668899999999999999999875 11 2233321 1 11111111 123445556665556
Q ss_pred CCeEEEEEeCCCC
Q 038611 211 KAKFVLILDDMWE 223 (837)
Q Consensus 211 ~k~~LlVlDdv~~ 223 (837)
..+.+|+||+++.
T Consensus 569 ~~P~IifiDEiDs 581 (806)
T 3cf2_A 569 AAPCVLFFDELDS 581 (806)
T ss_dssp TCSEEEECSCGGG
T ss_pred cCCceeechhhhH
Confidence 6799999999864
No 448
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.67 E-value=0.12 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999987643
No 449
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.64 E-value=0.28 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998765
No 450
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.64 E-value=0.46 Score=59.76 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC-----CccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE-----NEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l 204 (837)
.-+++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++.+... ..+..+....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4589999999999999999999887632 23568999887776653 25556543211 11222222222
Q ss_pred HHHHhcCCeEEEEEeCCCCC
Q 038611 205 LGMLKAKAKFVLILDDMWEA 224 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv~~~ 224 (837)
.......+.-+||+|-+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 22222456679999998643
No 451
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.64 E-value=0.14 Score=52.38 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345899999999999999999998764
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.60 E-value=0.13 Score=55.69 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|.|+|++|+||||+|+.+....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998754
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.58 E-value=0.18 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999998765
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.56 E-value=0.12 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34799999999999999999987643
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.54 E-value=0.12 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987643
No 456
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.54 E-value=0.44 Score=45.95 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQ 156 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~ 156 (837)
...|.|-|..|+||||+++.+.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998873
No 457
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.51 E-value=0.18 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
..+++|+|..|+|||||++.++..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4699999999999999999999876
No 458
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.50 E-value=0.12 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 459
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.49 E-value=0.38 Score=51.50 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhc-------CCCC-eEEEEEeCCCc-CHHHHHHHHHHH--hc-----CCCCC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKET-------NKFN-VVIWVTVSQPL-DLIKLQTEIATA--LK-----ESLPE 193 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~--l~-----~~~~~ 193 (837)
+-.-++|.|.+|+|||+|+.++++...... ++-+ .++++-+++.. ...++.+++... +. ....+
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 346778999999999999999988741100 1111 67778787654 355555554432 10 01111
Q ss_pred CccHH-----HHHHHHHHHHh--cCCeEEEEEeCCC
Q 038611 194 NEDKV-----SRAGRLLGMLK--AKAKFVLILDDMW 222 (837)
Q Consensus 194 ~~~~~-----~~~~~l~~~l~--~~k~~LlVlDdv~ 222 (837)
..... .....+.+.+. .++..|+++||+-
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111 12223455554 3899999999984
No 460
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.47 E-value=0.12 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 461
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.44 E-value=0.12 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987543
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.37 E-value=0.5 Score=59.44 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHHHHHHHHHHhcCCCCC-----CccHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKESLPE-----NEDKVSRAGRL 204 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l 204 (837)
.-++|-|+|+.|.||||||.++....++ .-...+|+.+....+..- ++.+|.+... .....+.+...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~---~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3589999999999999999999876532 346689998887777653 7777765421 12223344444
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 038611 205 LGMLKAKAKFVLILDDMWE 223 (837)
Q Consensus 205 ~~~l~~~k~~LlVlDdv~~ 223 (837)
...+..+..-+||+|-|-.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 4444567788999998843
No 463
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.37 E-value=0.27 Score=50.21 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 172 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 172 (837)
.++|+|.|-||+||||+|..++..... . ...+.-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~-~--G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE-M--GKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH-T--TCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH-C--CCeEEEEecCC
Confidence 468889999999999999999988733 2 23466676654
No 464
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.29 E-value=0.13 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
-.+++|+|+.|.|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999988654
No 465
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.27 E-value=0.13 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34799999999999999999987643
No 466
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.25 E-value=0.13 Score=52.12 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34799999999999999999987654
No 467
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.23 E-value=0.15 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.8
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 468
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.22 E-value=0.15 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 469
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.21 E-value=0.16 Score=51.00 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44699999999999999999998865
No 470
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.06 E-value=0.5 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|.|-|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 471
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.01 E-value=0.17 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.95 E-value=0.17 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 473
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.92 E-value=0.16 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
..|+|+|.+|+|||||++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 474
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.90 E-value=0.14 Score=55.33 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEe
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 170 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~v 170 (837)
..+|.|+|.+|+||||+|..++...... + ..++.|+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~-G--~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR-G--LKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH-H--CCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-C--CeEEEEec
Confidence 4699999999999999999999877322 1 23555554
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.83 E-value=0.17 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=22.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999875
No 476
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.78 E-value=0.17 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.70 E-value=0.58 Score=52.27 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 171 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 171 (837)
.-.+++|+|..|+|||||++.++..... .-..++++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA---NKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEEe
Confidence 3579999999999999999999987532 12335565543
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.70 E-value=0.39 Score=45.21 Aligned_cols=24 Identities=21% Similarity=-0.022 Sum_probs=21.0
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.++.|+|+.|+||||+|..++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999997777665
No 479
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.67 E-value=0.45 Score=47.31 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCC-C-CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 116 KKVVEIIWENLMGD-K-APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 116 ~~~~~~l~~~l~~~-~-~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
......+..++... . -.-|.++|++|.|||.+|..+++..
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455677777764 2 4579999999999999999999863
No 480
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.64 E-value=0.4 Score=47.52 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=31.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 178 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~ 178 (837)
|+|.|-||+||||+|..++....+ ....++-|......+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~---~g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS---DYDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT---TCSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCcChHH
Confidence 667999999999999999998732 235577777765555443
No 481
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.62 E-value=0.21 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.015 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
....+++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.60 E-value=0.13 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.+.|.|.|+.|+||||||.++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998653
No 483
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.51 E-value=0.2 Score=45.78 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 038611 134 IGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 134 i~I~G~gGvGKTtLa~~v~~~ 154 (837)
|+|+|.+|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999765
No 484
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.45 E-value=0.22 Score=46.20 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
+...|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999998764
No 485
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.43 E-value=0.29 Score=46.82 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=30.6
Q ss_pred CEEEEE-cCCCChHHHHHHHHHHHHHhhcCCCCeEEEEEeCCCcCH
Q 038611 132 PKIGVW-GMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL 176 (837)
Q Consensus 132 ~vi~I~-G~gGvGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 176 (837)
++|+|+ +-||+||||+|..++..... ....++-|......+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCH
Confidence 578888 67999999999999988733 2345777776654443
No 486
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.42 E-value=0.17 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.5
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 487
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.38 E-value=1.4 Score=48.15 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.|+|+|.+|+|||||...+....
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
No 488
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.38 E-value=0.2 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
--|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999998865
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.34 E-value=0.17 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-.+++|+|+.|.|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988753
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.31 E-value=0.14 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
.-.+++|+|+.|.|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 4579999999999999999988754
No 491
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.27 E-value=0.2 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34799999999999999999998653
No 492
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.24 E-value=0.21 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-|+|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.23 E-value=0.19 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
--|+|+|.+|+|||||++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45899999999999999998764
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.19 E-value=0.21 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 131 APKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 131 ~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
...|+|.|..|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998875
No 495
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.17 E-value=0.26 Score=47.76 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 129 DKAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 129 ~~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
.....|.|+|.+|+|||||+..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998753
No 496
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.15 E-value=0.2 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
--|+|+|.+|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998865
No 497
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.12 E-value=0.21 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999888765
No 498
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.10 E-value=0.21 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred CEEEEEcCCCChHHHHHHHHHHH
Q 038611 132 PKIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 132 ~vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
--|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998765
No 499
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.06 E-value=0.21 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 038611 133 KIGVWGMGGIGKTTIMKEINNR 154 (837)
Q Consensus 133 vi~I~G~gGvGKTtLa~~v~~~ 154 (837)
-|+|+|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 500
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.04 E-value=0.34 Score=50.92 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHHHHH
Q 038611 130 KAPKIGVWGMGGIGKTTIMKEINNRL 155 (837)
Q Consensus 130 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 155 (837)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
Done!