BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038612
(678 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 153/558 (27%), Positives = 229/558 (41%), Gaps = 112/558 (20%)
Query: 51 LEVTSSWDTSVNLCQWT-GVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNH 109
L+++++ + N+ W CG + L + + D+ S LE L ++ N+
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGE----LKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 208
Query: 110 LRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNI 169
+P +G+ SALQ D+ N L G ++ LK LN+ N F G +P
Sbjct: 209 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----- 262
Query: 170 SSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASN-LIELNLGQ 228
LPL +L+ L +A+N TG IP LS A + L L+L
Sbjct: 263 ----------------LPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 229 NHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGN 288
NHF G V F S L L+ +NN E D +L L+ L+L N+F G
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----TLLKMRGLKVLDLSFNEFSGE 355
Query: 289 LPHFIANLSKTMTIIDMGENKLSG--------------------------TIPLGIGNLV 322
LP + NLS ++ +D+ N SG IP + N
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 323 NLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNL 382
L L N L GTIP +GSL L+ L L+ N LEG IP DFN+L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 383 QGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNL 442
G IPS L +C NL + +S+N+L G +P+ I + L+ L LSNN SG +P +G+
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI-LKLSNNSFSGNIPAELGDC 534
Query: 443 KNLARLDISMNHFFGEIPATL---------SACTSLEYLYMQGNS--------------- 478
++L LD++ N F G IPA + + Y+Y++ +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 479 ----------------------FGGRIPXXXXXXXXXXXXXXXRNNLSGKIPEYLENLPF 516
+GG N LSG IP+ + ++P+
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 517 LQYLDLSYNHFEGQVPAK 534
L L+L +N G +P +
Sbjct: 655 LFILNLGHNDISGSIPDE 672
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 157/543 (28%), Positives = 228/543 (41%), Gaps = 87/543 (16%)
Query: 73 RRHQRVTELYLRNQSLGADIGYSS---WSKLEKLSIAVNHLRGQLPASI-GNLSALQAFD 128
R TEL L N S +G L+ LS+A N G++P + G L D
Sbjct: 238 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 297
Query: 129 VGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPV-SIYNISSLEMIFLPANRLEGILP 187
+ N +G +P G L+ L + NNFSG +P+ ++ + L+++ L N G LP
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 188 LNIGFNLPNLKSLIVAQNNLTGPI-PHSLSNASN-LIELNLGQNHFTGKVSIDFNGLSDL 245
++ +L +L ++ NN +GPI P+ N N L EL L N FTGK+ + S+L
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 246 AWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDM 305
L N L + SL + SKL L+L N G +P + + KT+ + +
Sbjct: 418 VSLHLSFNYLSGTIPS------SLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLIL 470
Query: 306 GENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSS 365
N L+G IP G+ N NLN SL N+L G IP IG L+NL +L L NS GNIP+
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 366 XXXXXXXXXXXXDFNNLQGNIPSSL--------------------------GSCQ---NL 396
+ N G IP+++ C NL
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 397 MEL--IVSH--NKLNGTLPQQILEI-----RTLSFQ-------LDLSNNLLSGYLPFRVG 440
+E I S N+L+ P I + +F LD+S N+LSGY+P +G
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 441 NLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPXXXXXXXXXXXXXXXR 500
++ L L++ N G IP + L L +
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS------------------------S 686
Query: 501 NNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGGLDELHL 560
N L G+IP+ + L L +DLS N+ G +P G F + N LCG L
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPL 742
Query: 561 PSC 563
P C
Sbjct: 743 PRC 745
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 157/563 (27%), Positives = 250/563 (44%), Gaps = 66/563 (11%)
Query: 57 WDTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLS-------IAVNH 109
W ++ N C + GVTC R +VT + L ++ L ++G+S+ S ++ +H
Sbjct: 30 WSSNKNPCTFDGVTC--RDDKVTSIDLSSKPL--NVGFSAVSSSLLSLTGLESLFLSNSH 85
Query: 110 LRGQLPASIGNLSALQAFDVGENTLHGRIPE--SLGQLRSLKFLNVEEN--NFSGMVPVS 165
+ G + + ++L + D+ N+L G + SLG LKFLNV N +F G V
Sbjct: 86 INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 144
Query: 166 IYNISSLEMIFLPANRLEG--ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIE 223
+ ++SLE++ L AN + G ++ + LK L ++ N ++G + +S NL
Sbjct: 145 L-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEF 201
Query: 224 LNLGQNHFTGKVSIDFNG-LSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKL------- 275
L++ N+F+ I F G S L L N L DF +++ C++L
Sbjct: 202 LDVSSNNFS--TGIPFLGDCSALQHLDISGNKLSG------DFSRAISTCTELKLLNISS 253
Query: 276 ---------------EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGN 320
++L L +N+F G +P F++ T+T +D+ N G +P G+
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 321 LVNLNLFSLHLNQLIGTIP-HVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXX-D 378
L +L N G +P + ++ L++L L N G +P S
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 379 FNNLQGNIPSSLGSCQN----LMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGY 434
NN G I +L CQN L EL + +N G +P + L L LS N LSG
Sbjct: 374 SNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGT 430
Query: 435 LPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPXXXXXXXXXX 494
+P +G+L L L + +N GEIP L +LE L + N G IP
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 495 XXXXXRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGG 554
N L+G+IP+++ L L L LS N F G +PA+ + ++ I L N NL G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 549
Query: 555 LDELHLPSCPLKGSRKSKVTFLV 577
+P+ K S K F+
Sbjct: 550 ----TIPAAMFKQSGKIAANFIA 568
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 164/336 (48%), Gaps = 22/336 (6%)
Query: 71 CGRRHQRVTELYLRNQSLGADI--GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFD 128
C + ELYL+N I S+ S+L L ++ N+L G +P+S+G+LS L+
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 129 VGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPL 188
+ N L G IP+ L +++L+ L ++ N+ +G +P + N ++L I L NRL G +P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 189 NIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKV---------SIDF 239
IG L NL L ++ N+ +G IP L + +LI L+L N F G + I
Sbjct: 506 WIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 240 NGLSDLAWLSFEANNLGAE---ASNDLDF----VFSLTNCSKLEWLELRKNQFGGNL-PH 291
N ++ ++ + + + E A N L+F L S + +GG+ P
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 292 FIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLL 351
F N +M +DM N LSG IP IG++ L + +L N + G+IP +G L+ L +L
Sbjct: 625 FDNN--GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 352 YLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIP 387
L N L+G IP + NNL G IP
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 153/558 (27%), Positives = 229/558 (41%), Gaps = 112/558 (20%)
Query: 51 LEVTSSWDTSVNLCQWT-GVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNH 109
L+++++ + N+ W CG + L + + D+ S LE L ++ N+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGE----LKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 110 LRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNI 169
+P +G+ SALQ D+ N L G ++ LK LN+ N F G +P
Sbjct: 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----- 265
Query: 170 SSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASN-LIELNLGQ 228
LPL +L+ L +A+N TG IP LS A + L L+L
Sbjct: 266 ----------------LPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 229 NHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGN 288
NHF G V F S L L+ +NN E D +L L+ L+L N+F G
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----TLLKMRGLKVLDLSFNEFSGE 358
Query: 289 LPHFIANLSKTMTIIDMGENKLSG--------------------------TIPLGIGNLV 322
LP + NLS ++ +D+ N SG IP + N
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 323 NLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNL 382
L L N L GTIP +GSL L+ L L+ N LEG IP DFN+L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 383 QGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNL 442
G IPS L +C NL + +S+N+L G +P+ I + L+ L LSNN SG +P +G+
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI-LKLSNNSFSGNIPAELGDC 537
Query: 443 KNLARLDISMNHFFGEIPATL---------SACTSLEYLYMQGNS--------------- 478
++L LD++ N F G IPA + + Y+Y++ +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 479 ----------------------FGGRIPXXXXXXXXXXXXXXXRNNLSGKIPEYLENLPF 516
+GG N LSG IP+ + ++P+
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 517 LQYLDLSYNHFEGQVPAK 534
L L+L +N G +P +
Sbjct: 658 LFILNLGHNDISGSIPDE 675
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 157/543 (28%), Positives = 228/543 (41%), Gaps = 87/543 (16%)
Query: 73 RRHQRVTELYLRNQSLGADIGYSS---WSKLEKLSIAVNHLRGQLPASI-GNLSALQAFD 128
R TEL L N S +G L+ LS+A N G++P + G L D
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 129 VGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPV-SIYNISSLEMIFLPANRLEGILP 187
+ N +G +P G L+ L + NNFSG +P+ ++ + L+++ L N G LP
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 188 LNIGFNLPNLKSLIVAQNNLTGPI-PHSLSNASN-LIELNLGQNHFTGKVSIDFNGLSDL 245
++ +L +L ++ NN +GPI P+ N N L EL L N FTGK+ + S+L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 246 AWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDM 305
L N L + SL + SKL L+L N G +P + + KT+ + +
Sbjct: 421 VSLHLSFNYLSGTIPS------SLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLIL 473
Query: 306 GENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSS 365
N L+G IP G+ N NLN SL N+L G IP IG L+NL +L L NS GNIP+
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 366 XXXXXXXXXXXXDFNNLQGNIPSSL--------------------------GSCQ---NL 396
+ N G IP+++ C NL
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 397 MEL--IVSH--NKLNGTLPQQILEI-----RTLSFQ-------LDLSNNLLSGYLPFRVG 440
+E I S N+L+ P I + +F LD+S N+LSGY+P +G
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 441 NLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPXXXXXXXXXXXXXXXR 500
++ L L++ N G IP + L L +
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS------------------------S 689
Query: 501 NNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGGLDELHL 560
N L G+IP+ + L L +DLS N+ G +P G F + N LCG L
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPL 745
Query: 561 PSC 563
P C
Sbjct: 746 PRC 748
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 157/563 (27%), Positives = 250/563 (44%), Gaps = 66/563 (11%)
Query: 57 WDTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLS-------IAVNH 109
W ++ N C + GVTC R +VT + L ++ L ++G+S+ S ++ +H
Sbjct: 33 WSSNKNPCTFDGVTC--RDDKVTSIDLSSKPL--NVGFSAVSSSLLSLTGLESLFLSNSH 88
Query: 110 LRGQLPASIGNLSALQAFDVGENTLHGRIPE--SLGQLRSLKFLNVEEN--NFSGMVPVS 165
+ G + + ++L + D+ N+L G + SLG LKFLNV N +F G V
Sbjct: 89 INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 166 IYNISSLEMIFLPANRLEG--ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIE 223
+ ++SLE++ L AN + G ++ + LK L ++ N ++G + +S NL
Sbjct: 148 L-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEF 204
Query: 224 LNLGQNHFTGKVSIDFNG-LSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKL------- 275
L++ N+F+ I F G S L L N L DF +++ C++L
Sbjct: 205 LDVSSNNFS--TGIPFLGDCSALQHLDISGNKLSG------DFSRAISTCTELKLLNISS 256
Query: 276 ---------------EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGN 320
++L L +N+F G +P F++ T+T +D+ N G +P G+
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 321 LVNLNLFSLHLNQLIGTIP-HVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXX-D 378
L +L N G +P + ++ L++L L N G +P S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 379 FNNLQGNIPSSLGSCQN----LMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGY 434
NN G I +L CQN L EL + +N G +P + L L LS N LSG
Sbjct: 377 SNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGT 433
Query: 435 LPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPXXXXXXXXXX 494
+P +G+L L L + +N GEIP L +LE L + N G IP
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 495 XXXXXRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGG 554
N L+G+IP+++ L L L LS N F G +PA+ + ++ I L N NL G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 552
Query: 555 LDELHLPSCPLKGSRKSKVTFLV 577
+P+ K S K F+
Sbjct: 553 ----TIPAAMFKQSGKIAANFIA 571
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 164/336 (48%), Gaps = 22/336 (6%)
Query: 71 CGRRHQRVTELYLRNQSLGADI--GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFD 128
C + ELYL+N I S+ S+L L ++ N+L G +P+S+G+LS L+
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 129 VGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPL 188
+ N L G IP+ L +++L+ L ++ N+ +G +P + N ++L I L NRL G +P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 189 NIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKV---------SIDF 239
IG L NL L ++ N+ +G IP L + +LI L+L N F G + I
Sbjct: 509 WIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 240 NGLSDLAWLSFEANNLGAE---ASNDLDF----VFSLTNCSKLEWLELRKNQFGGNL-PH 291
N ++ ++ + + + E A N L+F L S + +GG+ P
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 292 FIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLL 351
F N +M +DM N LSG IP IG++ L + +L N + G+IP +G L+ L +L
Sbjct: 628 FDNN--GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 352 YLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIP 387
L N L+G IP + NNL G IP
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 146/317 (46%), Gaps = 22/317 (6%)
Query: 33 NETDRLALLAIKSQFHDPLEVTSSWDTSVNLCQ--WTGVTCGRRHQ--RVTELYLRNQSL 88
N D+ ALL IK +P + SSW + + C W GV C Q RV L L +L
Sbjct: 4 NPQDKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 89 GADIGY-SSWSKLEKLSI----AVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLG 143
SS + L L+ +N+L G +P +I L+ L + + G IP+ L
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 144 QLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVA 203
Q+++L L+ N SG +P SI ++ +L I NR+ G +P + G S+ ++
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 204 QNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDL 263
+N LTG IP + +N NL ++L +N G S+ F + + A N L
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL--------AKNSL 233
Query: 264 DFVFSLTNCSK-LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLV 322
F SK L L+LR N+ G LP + L K + +++ N L G IP G GNL
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQG-GNLQ 291
Query: 323 NLNLFSLHLNQLIGTIP 339
++ + N+ + P
Sbjct: 292 RFDVSAYANNKCLCGSP 308
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 114/255 (44%), Gaps = 15/255 (5%)
Query: 314 IPLGIGNLVNLN-LFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXX 372
IP + NL LN L+ +N L+G IP I L L LY+ ++ G IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 373 XXXXXDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLS 432
+N L G +P S+ S NL+ + N+++G +P L + +S N L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 433 GYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFG---GRIPXXXXX 489
G +P NL NLA +D+S N G+ + + + +++ NS G++
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-----G 241
Query: 490 XXXXXXXXXXRNN-LSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGN 548
RNN + G +P+ L L FL L++S+N+ G++P G + N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 549 ENLCGGLDELHLPSC 563
+ LCG LP+C
Sbjct: 302 KCLCGS----PLPAC 312
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 154/348 (44%), Gaps = 56/348 (16%)
Query: 65 QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL 124
Q T +T + ++ ++ + N + ++ + L L++ N + P + NL+ L
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNL 131
Query: 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184
++ NT+ +L L SL+ L+ N + + P++ N+++LE + + +N++
Sbjct: 132 NRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSD 187
Query: 185 ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSD 244
I ++ L NL+SLI N ++ P + +NL EL+L N
Sbjct: 188 I---SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQL------------- 229
Query: 245 LAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIID 304
D+ + SLTN + L+ L NQ P ++ L+K +T +
Sbjct: 230 ----------------KDIGTLASLTNLTDLD---LANNQISNLAP--LSGLTK-LTELK 267
Query: 305 MGENKLSGTIPL-GIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIP 363
+G N++S PL G+ L NL L+ NQL P I +LKNL L LY N++ P
Sbjct: 268 LGANQISNISPLAGLTALTNL---ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 364 SSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLP 411
S F+N + + SSL + N+ L HN+++ P
Sbjct: 323 VSSLTKLQRLF----FSNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 112/268 (41%), Gaps = 47/268 (17%)
Query: 65 QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL 124
Q T + + + L L + ++ S + L++LS + N + P + NL+ L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184
+ D+ N + L +L +L+ L N S + P+ I +++L+ + L N+L+
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 231
Query: 185 ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH---------FTGKV 235
I L +L NL L +A N ++ P LS + L EL LG N T
Sbjct: 232 IGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 236 SIDFN-----------GLSDLAWLSFEANNLGAEA--------------SNDLDFVFSLT 270
+++ N L +L +L+ NN+ + +N + V SL
Sbjct: 287 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLA 346
Query: 271 NCSKLEWLELRKNQFGGNLPHFIANLSK 298
N + + WL NQ P +ANL++
Sbjct: 347 NLTNINWLSAGHNQISDLTP--LANLTR 372
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 171/385 (44%), Gaps = 65/385 (16%)
Query: 30 VHTNETDRLALLAIKSQFHDPLEVTSSWDTSVNLC--QWTGVTCGRRHQRVTELYLRNQS 87
V T + DRL + +I D +E ++ T +N Q T +T + ++ ++ + N
Sbjct: 43 VTTLQADRLGIKSI-----DGVEYLNNL-TQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 88 LGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRS 147
+ ++ + L L++ N + P + NL+ L ++ NT+ +L L S
Sbjct: 97 IADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTS 152
Query: 148 LKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNL 207
L+ LN N + + P++ N+++LE + + +N++ I ++ L NL+SLI N +
Sbjct: 153 LQQLNFG-NQVTDLKPLA--NLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQI 206
Query: 208 TGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVF 267
+ P + +NL EL+L N D+ +
Sbjct: 207 SDITPLGI--LTNLDELSLNGNQL-----------------------------KDIGTLA 235
Query: 268 SLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPL-GIGNLVNLNL 326
SLTN + L+ L NQ P ++ L+K +T + +G N++S PL G+ L NL
Sbjct: 236 SLTNLTDLD---LANNQISNLAP--LSGLTK-LTELKLGANQISNISPLAGLTALTNL-- 287
Query: 327 FSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNI 386
L+ NQL P I +LKNL L LY N++ P S F+N + +
Sbjct: 288 -ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF----FSNNKVSD 340
Query: 387 PSSLGSCQNLMELIVSHNKLNGTLP 411
SSL + N+ L HN+++ P
Sbjct: 341 VSSLANLTNINWLSAGHNQISDLTP 365
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 118 IGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFL 177
+ NL+ L+ D+ N + L +L +L+ L N S + P+ I +++L+ + L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 223
Query: 178 PANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH------- 230
N+L+ I L +L NL L +A N ++ P LS + L EL LG N
Sbjct: 224 NGNQLKDIGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
Query: 231 --FTGKVSIDFN-----------GLSDLAWLSFEANNLGAEA--------------SNDL 263
T +++ N L +L +L+ NN+ + +N +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV 338
Query: 264 DFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSK 298
V SL N + + WL NQ P +ANL++
Sbjct: 339 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTR 371
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 139/308 (45%), Gaps = 39/308 (12%)
Query: 67 TGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQA 126
T V + +T+L + + + + G + LE L++ N + P S NL L
Sbjct: 35 TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTN 92
Query: 127 FDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANR-LEGI 185
+G N + +L L +L+ L + E+N S + P++ N++ + L AN L +
Sbjct: 93 LYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLA--NLTKXYSLNLGANHNLSDL 148
Query: 186 LPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQN---------------H 230
PL+ N L L V ++ + P ++N ++L L+L N +
Sbjct: 149 SPLS---NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHY 203
Query: 231 FTGKVSIDFNGLSDLAWLS--FEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGN 288
FT V N ++D+ ++ N+L +N + + L N S+L WLE+ NQ
Sbjct: 204 FTAYV----NQITDITPVANXTRLNSLKI-GNNKITDLSPLANLSQLTWLEIGTNQISD- 257
Query: 289 LPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNL 348
+ + +L+K + +++G N++S L NL LN L+ NQL VIG L NL
Sbjct: 258 -INAVKDLTK-LKXLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDXEVIGGLTNL 313
Query: 349 QLLYLYGN 356
L+L N
Sbjct: 314 TTLFLSQN 321
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 144/333 (43%), Gaps = 63/333 (18%)
Query: 145 LRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQ 204
L +L++LN+ N + + P+S N+ L +++ N++ I L NL NL+ L + +
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITDISALQ---NLTNLRELYLNE 119
Query: 205 NNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLD 264
+N++ P L+N + LNLG NH LSDL+ LS
Sbjct: 120 DNISDISP--LANLTKXYSLNLGANH----------NLSDLSPLS--------------- 152
Query: 265 FVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNL 324
N + L +L + +++ P IANL+ ++ + N++ PL +L +L
Sbjct: 153 ------NXTGLNYLTVTESKVKDVTP--IANLTDLYSL-SLNYNQIEDISPLA--SLTSL 201
Query: 325 NLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQG 384
+ F+ ++NQ+ P + + L L + N + P + + +
Sbjct: 202 HYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLT-------WLEIGT 252
Query: 385 NIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLS--FQLD---LSNNLLSGYLPFRV 439
N S + + ++L +L K QI +I L+ QL+ L+NN L +
Sbjct: 253 NQISDINAVKDLTKL-----KXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVI 307
Query: 440 GNLKNLARLDISMNHFFGEIP-ATLSACTSLEY 471
G L NL L +S NH P A+LS S ++
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLASLSKXDSADF 340
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 95 SSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVE 154
+S + L + VN + P + N + L + +G N + P L L L +L +
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251
Query: 155 ENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHS 214
N S + V +++ L+ + + +N++ I LN NL L SL + N L
Sbjct: 252 TNQISDINAVK--DLTKLKXLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDXEV 306
Query: 215 LSNASNLIELNLGQNHFT 232
+ +NL L L QNH T
Sbjct: 307 IGGLTNLTTLFLSQNHIT 324
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 127 FDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGIL 186
D+G+N + + L+ L + EN S + P + N+ +L + L +NRL+ ++
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 187 PLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLA 246
PL + L NL L +++N + + + + NL L +G N F+GL+ L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 247 WLSFEANNLGAEASNDLDFVFSL 269
L+ E NL + + L + L
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGL 178
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 112/268 (41%), Gaps = 47/268 (17%)
Query: 65 QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL 124
Q T + + + L L + ++ S + L++LS + N + P + NL+ L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184
+ D+ N + L +L +L+ L N S + P+ I +++L+ + L N+L+
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 231
Query: 185 ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH---------FTGKV 235
I L +L NL L +A N ++ P LS + L EL LG N T
Sbjct: 232 IGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 236 SIDFN-----------GLSDLAWLSFEANNLGAEA--------------SNDLDFVFSLT 270
+++ N L +L +L+ NN+ + +N + V SL
Sbjct: 287 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA 346
Query: 271 NCSKLEWLELRKNQFGGNLPHFIANLSK 298
N + + WL NQ P +ANL++
Sbjct: 347 NLTNINWLSAGHNQISDLTP--LANLTR 372
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 78 VTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLR-----GQLPASIGNLSALQAFDVGEN 132
+ E YL+N + +W L+ L ++ NHLR G++ ++ NL++L D+ N
Sbjct: 346 MVEEYLKNSACKG-----AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL---DISRN 397
Query: 133 TLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGF 192
T H +P+S ++FLN+ +G+ V +LE++ + N L+ +
Sbjct: 398 TFHP-MPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTLEVLDVSNNNLD-----SFSL 448
Query: 193 NLPNLKSLIVAQNNL 207
LP L+ L +++N L
Sbjct: 449 FLPRLQELYISRNKL 463
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 78 VTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLR-----GQLPASIGNLSALQAFDVGEN 132
+ E YL+N + +W L+ L ++ NHLR G++ ++ NL++L D+ N
Sbjct: 372 MVEEYLKNSACKG-----AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL---DISRN 423
Query: 133 TLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGF 192
T H +P+S ++FLN+ +G+ V +LE++ + N L+ +
Sbjct: 424 TFHP-MPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTLEVLDVSNNNLD-----SFSL 474
Query: 193 NLPNLKSLIVAQNNL 207
LP L+ L +++N L
Sbjct: 475 FLPRLQELYISRNKL 489
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 47/268 (17%)
Query: 65 QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL 124
Q T + + + L L + ++ S + L++L+ + N + P + NL+ L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTL 175
Query: 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184
+ D+ N + L +L +L+ L N S + P+ I +++L+ + L N+L+
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 231
Query: 185 ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH---------FTGKV 235
I L +L NL L +A N ++ P LS + L EL LG N T
Sbjct: 232 IGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 236 SIDFN-----------GLSDLAWLSFEANNLGAEA--------------SNDLDFVFSLT 270
+++ N L +L +L+ NN+ + +N + V SL
Sbjct: 287 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA 346
Query: 271 NCSKLEWLELRKNQFGGNLPHFIANLSK 298
N + + WL NQ P +ANL++
Sbjct: 347 NLTNINWLSAGHNQISDLTP--LANLTR 372
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 93 GYSSWSKLEKLSIAVN-HLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFL 151
++ + LE+L ++ N LR PA+ L L + L P L +L++L
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 152 NVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPI 211
+++N + + ++ +L +FL NR+ + P L +L L++ QN +
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 212 PHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253
PH+ + L+ L L N+ + + L L +L N
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 8/171 (4%)
Query: 116 ASIGNLSALQAFDVGENT-LHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEM 174
A+ L+ L+ D+ +N L P + L L L+++ + P +++L+
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 175 IFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGK 234
++L N L+ LP + +L NL L + N ++ + +L L L QN
Sbjct: 133 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 235 VSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQF 285
F L L L ANNL A + +L L++L L N +
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDNPW 236
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 11/200 (5%)
Query: 162 VPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL 221
VPV I S + IFL NR+ + P NL L + N L + + + L
Sbjct: 25 VPVGIPAAS--QRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 81
Query: 222 IELNLGQNHFTGKVS-IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLEL 280
+L+L N V F+GL L L + L E L + L++L L
Sbjct: 82 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGL-----FRGLAALQYLYL 135
Query: 281 RKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH 340
+ N LP +T + + N++S L +L+ LH N++ PH
Sbjct: 136 QDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 341 VIGSLKNLQLLYLYGNSLEG 360
L L LYL+ N+L
Sbjct: 195 AFRDLGRLMTLYLFANNLSA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 93 GYSSWSKLEKLSIAVN-HLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFL 151
++ + LE+L ++ N LR PA+ L L + L P L +L++L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 152 NVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPI 211
+++N + + ++ +L +FL NR+ + P L +L L++ QN +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 212 PHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253
PH+ + L+ L L N+ + + L L +L N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 8/171 (4%)
Query: 116 ASIGNLSALQAFDVGENT-LHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEM 174
A+ L+ L+ D+ +N L P + L L L+++ + P +++L+
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 175 IFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGK 234
++L N L+ LP + +L NL L + N ++ + +L L L QN
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 235 VSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQF 285
F L L L ANNL A + +L L++L L N +
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDNPW 237
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 11/200 (5%)
Query: 162 VPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL 221
VPV I S + IFL NR+ + P NL L + N L + + + L
Sbjct: 26 VPVGIPAAS--QRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 222 IELNLGQNHFTGKVS-IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLEL 280
+L+L N V F+GL L L + L E L + L++L L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGL-----FRGLAALQYLYL 136
Query: 281 RKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH 340
+ N LP +T + + N++S L +L+ LH N++ PH
Sbjct: 137 QDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 341 VIGSLKNLQLLYLYGNSLEG 360
L L LYL+ N+L
Sbjct: 196 AFRDLGRLMTLYLFANNLSA 215
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
Query: 78 VTELYLRNQSL-GADIG-YSSWSKLEKLSIAVN-HLRGQLPASIGNLSALQAFDVGENTL 134
+T L+L + +L G D ++ + LE+L ++ N LR P + L L + L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 135 HGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNL 194
P L +L++L +++NN + + ++ +L +FL NR+ + P + L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV-PEHAFRGL 175
Query: 195 PNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFT 232
+L L++ QN++ PH+ + L+ L L N+ +
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 2/163 (1%)
Query: 94 YSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENT-LHGRIPESLGQLRSLKFLN 152
+ S L L + N L G A+ L+ L+ D+ +N L P + L L L+
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 153 VEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIP 212
++ + P +++L+ ++L N L+ LP N +L NL L + N +
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPE 169
Query: 213 HSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL 255
H+ +L L L QNH F L L L ANNL
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 11/198 (5%)
Query: 162 VPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL 221
VP I +S + IFL NR+ + P + NL L + N L G + + + L
Sbjct: 25 VPTGI--PASSQRIFLHGNRISYV-PAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 222 IELNLGQNHFTGKVS-IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLEL 280
+L+L N V F GL L L + L E L + L++L L
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL-QELGPGL-----FRGLAALQYLYL 135
Query: 281 RKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH 340
+ N LP +T + + N++ L +L+ LH N + PH
Sbjct: 136 QDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
Query: 341 VIGSLKNLQLLYLYGNSL 358
L L LYL+ N+L
Sbjct: 195 AFRDLGRLMTLYLFANNL 212
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 111/279 (39%), Gaps = 48/279 (17%)
Query: 91 DIGYS-SWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLK 149
D Y+ W LE VN GQ P L +L+ N E L SL+
Sbjct: 299 DFSYNFGWQHLE----LVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV--DLPSLE 350
Query: 150 FLNVEEN--NFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGF-NLPNLKSLIVAQNN 206
FL++ N +F G S + +SL+ + L N G++ ++ F L L+ L +N
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSN 407
Query: 207 LTGPIPHSLS-NASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDF 265
L S+ + NLI L++ H + FNGLS
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS--------------------- 446
Query: 266 VFSLTNCSKLEWLELRKNQFGGN-LPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNL 324
LE L++ N F N LP L + +T +D+ + +L P +L +L
Sbjct: 447 ---------LEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 325 NLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIP 363
+ ++ NQL + L +LQ ++L+ N + + P
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 441 NLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGR-IPXXXXXXXXXXXXXXX 499
+L+NL LDIS H + +SLE L M GNSF +P
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 500 RNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLV 546
+ L P +L LQ L+++ N + VP G+F TS+ +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP-DGIFDRLTSLQKI 523
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
F+ + IG+GSFG VYKGI + VVA+K+I+L
Sbjct: 21 FTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDL 54
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 48/268 (17%)
Query: 65 QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL 124
Q T + + + L L + ++ S + L++LS N + P + NL+ L
Sbjct: 122 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTL 178
Query: 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184
+ D+ N + L +L +L+ L N S + P+ I +++L+ + L N+L+
Sbjct: 179 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 234
Query: 185 ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH---------FTGKV 235
I L +L NL L +A N ++ P LS + L EL LG N T
Sbjct: 235 IGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 289
Query: 236 SIDFN-----------GLSDLAWLSFEANNLGAE--------------ASNDLDFVFSLT 270
+++ N L +L +L+ NN+ A+N + V SL
Sbjct: 290 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA 349
Query: 271 NCSKLEWLELRKNQFGGNLPHFIANLSK 298
N + + WL NQ P +ANL++
Sbjct: 350 NLTNINWLSAGHNQISDLTP--LANLTR 375
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 289 LPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNL 348
LP I NLS + ++D+ N+L+ ++P +G+ L F + ++ T+P G+L NL
Sbjct: 262 LPAEIKNLS-NLRVLDLSHNRLT-SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNL 318
Query: 349 QLLYLYGNSLE 359
Q L + GN LE
Sbjct: 319 QFLGVEGNPLE 329
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 413 QILEIRTLSFQLDLSNNL-LSG----YLPFRVGNLKNLARLDISMNHFFGEIPATLSACT 467
QI I F+ D L L+G LP + NL NL LD+S N +PA L +C
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCF 293
Query: 468 SLEYLYMQGN 477
L+Y Y N
Sbjct: 294 QLKYFYFFDN 303
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 113 QLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSL 172
+LPA I NLS L+ D+ N L +P LG LK+ +N + + P N+ +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNL 318
Query: 173 EMIFLPANRLE 183
+ + + N LE
Sbjct: 319 QFLGVEGNPLE 329
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
S L+ A++ FS N++G+G FG VYKG ++ +V ++ +GG F E
Sbjct: 29 SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 48/268 (17%)
Query: 65 QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL 124
Q T + + + L L + ++ S + L++LS N + P + NL+ L
Sbjct: 123 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTL 179
Query: 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184
+ D+ N + L +L +L+ L N S + P+ I +++L+ + L N+L+
Sbjct: 180 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 235
Query: 185 ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH---------FTGKV 235
I L +L NL L +A N ++ P LS + L EL LG N T
Sbjct: 236 IGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALT 290
Query: 236 SIDFN-----------GLSDLAWLSFEANNLGAEA--------------SNDLDFVFSLT 270
+++ N L +L +L+ NN+ + +N + V SL
Sbjct: 291 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLA 350
Query: 271 NCSKLEWLELRKNQFGGNLPHFIANLSK 298
N + + WL NQ P +ANL++
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTR 376
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 619 PFVSYAA----LRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVK 662
PF SY L +ATN F +IG G FG VYKG+ +G VA+K
Sbjct: 23 PFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALK 69
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 619 PFVSYAA----LRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVK 662
PF SY L +ATN F +IG G FG VYKG+ +G VA+K
Sbjct: 23 PFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALK 69
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
F+ IG+GSFG V+KGI + VVA+K+I+L
Sbjct: 24 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDL 57
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
F+ IG+GSFG V+KGI + VVA+K+I+L
Sbjct: 9 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDL 42
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
F+ IG+GSFG V+KGI + VVA+K+I+L
Sbjct: 9 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDL 42
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
F+ IG+GSFG V+KGI + VVA+K+I+L
Sbjct: 29 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDL 62
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
S L+ A++ F N++G+G FG VYKG ++ +V ++ +GG F E
Sbjct: 21 SLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
F+ IG+GSFG V+KGI + VVA+K+I+L
Sbjct: 25 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDL 58
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 118 IGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFL 177
+ NL+ L+ D+ N + L +L +L+ L N S + P+ I +++L+ + L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 223
Query: 178 PANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNH------- 230
N+L+ I L +L NL L +A N ++ P LS + L EL LG N
Sbjct: 224 NGNQLKDIGTL---ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
Query: 231 --FTGKVSIDFN-----------GLSDLAWLSFEANNLGAEA--------------SNDL 263
T +++ N L +L +L+ NN+ + +N +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 338
Query: 264 DFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSK 298
V SL N + + WL NQ P +ANL++
Sbjct: 339 SDVSSLANLTNINWLSAGHNQISDLTP--LANLTR 371
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 35/226 (15%)
Query: 94 YSSWSKLEKLSIAVNHL--RGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFL 151
+ ++L KLS++ N L +G S ++L+ D+ N + LG L L+ L
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHL 106
Query: 152 NVEENNFSGMVPVSIY-------------------------NISSLEMIFLPANRL-EGI 185
+ + +N M S++ +SSLE++ + N E
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 186 LPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDL 245
LP +I L NL L ++Q L P + ++ S+L LN+ N+F + + L+ L
Sbjct: 167 LP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 246 AWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPH 291
L + N++ +L S L +L L +N F H
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFACTCEH 266
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 441 NLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGR-IPXXXXXXXXXXXXXXX 499
+L+NL LDIS H + +SLE L M GNSF +P
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 500 RNNLSGKIPEYLENLPFLQYLDLSYNHF 527
+ L P +L LQ L++S+N+F
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 1/186 (0%)
Query: 294 ANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYL 353
+N+ +D+ NKLS L L L L+ N+L + LKNL+ L++
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92
Query: 354 YGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQ 413
N L+ D N L+ P S L L + +N+L +LP+
Sbjct: 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151
Query: 414 ILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLY 473
+ + T +L L NN L L L L + N + L+ L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 474 MQGNSF 479
+Q N +
Sbjct: 212 LQENPW 217
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 106 AVNHLRGQLPASIGNLSA-LQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPV 164
+V+ +L A N+ A + D+ N L ++ +L L+ L + +N + P
Sbjct: 20 SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PA 78
Query: 165 SIYN-ISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIE 223
I+ + +LE +++ N+L+ LP+ + L NL L + +N L P + + L
Sbjct: 79 GIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 224 LNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKN 283
L+LG N F+ L+ L L N L D + ++L+ L+L N
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL------TELKTLKLDNN 191
Query: 284 QFGGNLPHFIANLSKTMTIIDMGENKLSGT 313
Q +P + + + ++ + EN T
Sbjct: 192 QL-KRVPEGAFDSLEKLKMLQLQENPWDCT 220
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 273 SKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGI-GNLVNLNLFSLHL 331
+KL L L N+ LP I K + + + +NKL +P+G+ LVNL L
Sbjct: 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118
Query: 332 NQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLG 391
NQL P V SL L L L N L+ ++P +NN +P G
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPE--G 175
Query: 392 SCQNLMEL 399
+ L EL
Sbjct: 176 AFDKLTEL 183
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 500 RNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSIS 544
RN L P ++L L YL L YN Q KGVF TS+
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLK 160
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 98 SKLEKLSIAVNHLRGQLPASIGNL--SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE 155
+ ++ LS+A N L ++ L + L D+ N LH S L SL++L++E
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 156 NNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSL 215
NN + P S Y +S+L + L + + L + PN+ S
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLA---SHPNIDDF-------------SF 325
Query: 216 SNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKL 275
L LN+ N+ S F GL L +LS + + FV SL + S L
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFV-SLAH-SPL 383
Query: 276 EWLELRKNQFGGNLPHFIANLSKT----MTIIDMG----ENKLSGTIPLGIGNLVNLNLF 327
L L KN IAN + + + I+D+G E KLSG G+ N+ + L
Sbjct: 384 LTLNLTKNHISK-----IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLS 438
Query: 328 SLHLNQLIGTIPHVIGSLKNLQL 350
QL + ++ SL+ L L
Sbjct: 439 YNKYLQLSTSSFALVPSLQRLML 461
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENN 157
S + L++ N LR P + S L D G N++ PE L LK LN++ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 158 FSGMVPVSIYNISSLEMIFLPANRLEGI 185
S + + ++L + L +N + I
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKI 112
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
+ +ALR F ++G G++G VYKG + G + A+KV+++
Sbjct: 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV 59
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 86/208 (41%), Gaps = 33/208 (15%)
Query: 100 LEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFS 159
LE L++A N LR LPASI +L+ L+ + +PE L +
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDA-------SGEHQ 180
Query: 160 GMVPVSIYNISSLEMIFLPANRLEGI--LPLNIGFNLPNLKSLIVAQNNLT--GPIPHSL 215
G+V N+ SL + + GI LP +I NL NLKSL + + L+ GP H L
Sbjct: 181 GLV-----NLQSLRLEW------TGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHL 228
Query: 216 SNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKL 275
L EL+L F G + L L + + SN L + ++L
Sbjct: 229 PK---LEELDLRGCTALRNYPPIFGGRAPLKRLILK------DCSNLLTLPLDIHRLTQL 279
Query: 276 EWLELRKNQFGGNLPHFIANLSKTMTII 303
E L+LR LP IA L I+
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIIL 307
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 194 LPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253
LPN++ L + N L +L +NL L L N + F+ L++L L N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 254 NLGAEASNDLDFVFS-LTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSG 312
L + D VF LTN L +L L NQ LP + + +T +D+ N+L
Sbjct: 120 QLQSLP----DGVFDKLTN---LTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ- 170
Query: 313 TIPLGI-GNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIP 363
++P G+ L L L+ NQL V L +LQ ++L+ N + P
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 11/172 (6%)
Query: 317 GIGNLVNLNLFSLHLNQLIGTIPHVIGSLK---NLQLLYLYGNSLEGNIPSSXXXXXXXX 373
GI L N+ +L N+L H I +LK NL L L GN L+ +P+
Sbjct: 58 GIQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNL 111
Query: 374 XXXXDFNNLQGNIPSSL-GSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLS 432
N ++P + NL L ++HN+L +LP+ + + T +LDLS N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170
Query: 433 GYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIP 484
L L L + N TSL+Y+++ N + P
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 165 SIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIEL 224
++ +++L + L N+L+ LP + L NLK L++ +N L +NL L
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 225 NLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQ 284
NL N F+ L++L L N L + D ++L+ L L +NQ
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD------KLTQLKDLRLYQNQ 192
Query: 285 FGGNLPHFIANLSKTMTIIDMGENKLSGTIP 315
++P + + ++ I + +N T P
Sbjct: 193 L-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major
pdb|3E3P|B Chain B, Glycogen Synthase Kinase From Leishmania Major
Length = 360
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664
RK + F M GQG+FG V G GM VA+K +
Sbjct: 19 RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKV 56
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 103 LSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMV 162
L++ N LR A+ S L + DVG NT+ PE +L LK LN++ N S +
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 163 PVSIYNISSLEMIFLPANRLEGI 185
+ ++L + L +N ++ I
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKI 112
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 625 ALRKATNE-FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+L K E F +G+GS+G VYK I E G +VA+K + +
Sbjct: 22 SLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE 65
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 103 LSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMV 162
L++ N LR A+ S L + DVG NT+ PE +L LK LN++ N S +
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 163 PVSIYNISSLEMIFLPANRLEGI 185
+ ++L + L +N ++ I
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKI 117
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 194 LPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253
LP+L L + +N LTG P++ AS++ EL LG+N + F GL L L+ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 254 NLGAEASNDLDFVFSLT---------NCS-KLEWLE--LRKNQFGG 287
+ + + SLT NC+ L W LRK G
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNG 158
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 103 LSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMV 162
L++ N LR A+ S L + DVG NT+ PE +L LK LN++ N S +
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 163 PVSIYNISSLEMIFLPANRLEGI 185
+ ++L + L +N ++ I
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKI 122
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 248 LSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGE 307
L E+N L + D + LT L L +NQ +LP + + +TI+ + E
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTK------LSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85
Query: 308 NKLSGTIPLGI-GNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIP 363
NKL ++P G+ L L +L NQL + L +LQ ++L+ N + + P
Sbjct: 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGG 671
A NE IG+G FG+V+KG ++ VVA+K + L G
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEG 59
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGG 671
A NE IG+G FG+V+KG ++ VVA+K + L G
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEG 59
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 145 LRSLKFLNVEENNFSGMVPVSIYN-ISSLEMIFLPANRL-EGILPLNIGFNLPNLKSLIV 202
LR+L +L++ + + + I+N +SSLE++ + N E LP +I L NL L +
Sbjct: 420 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDL 477
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASND 262
+Q L P + ++ S+L LN+ N+F + + L+ L L + N++ +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 263 LDFVFSLTNCSKLEWLELRKNQFGGNLPH 291
L S L +L L +N F H
Sbjct: 538 LQHF-----PSSLAFLNLTQNDFACTCEH 561
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 442 LKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGR-IPXXXXXXXXXXXXXXXR 500
L+NL LDIS H + +SLE L M GNSF +P +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 501 NNLSGKIPEYLENLPFLQYLDLSYNHF 527
L P +L LQ L++S+N+F
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 94 YSSWSKLEKLSIAVNHLRGQ-LPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLN 152
++ S LE L +A N + LP L L D+ + L P + L SL+ LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 153 VEENNFSGMVPVSIYNISSLEMI 175
+ NNF + ++SL+++
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVL 523
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGG 671
A NE IG+G FG+V+KG ++ VVA+K + L G
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEG 59
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 145 LRSLKFLNVEENNFSGMVPVSIYN-ISSLEMIFLPANRL-EGILPLNIGFNLPNLKSLIV 202
LR+L +L++ + + + I+N +SSLE++ + N E LP +I L NL L +
Sbjct: 444 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDL 501
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASND 262
+Q L P + ++ S+L LN+ N+F + + L+ L L + N++ +
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 263 LDFVFSLTNCSKLEWLELRKNQFGGNLPH 291
L S L +L L +N F H
Sbjct: 562 LQHF-----PSSLAFLNLTQNDFACTCEH 585
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 441 NLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGR-IPXXXXXXXXXXXXXXX 499
+L+NL LDIS H + +SLE L M GNSF +P
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 500 RNNLSGKIPEYLENLPFLQYLDLSYNHF 527
+ L P +L LQ L++S+N+F
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 94 YSSWSKLEKLSIAVNHLRGQ-LPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLN 152
++ S LE L +A N + LP L L D+ + L P + L SL+ LN
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 153 VEENNFSGMVPVSIYNISSLEMI 175
+ NNF + ++SL+++
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVL 547
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 278 LELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGT 337
L L NQF +P ++N K +T+ID+ N++S N+ L L N+L
Sbjct: 36 LYLDGNQFTL-VPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 338 IPHVIGSLKNLQLLYLYGNSL 358
P LK+L+LL L+GN +
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDI 114
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 17 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 59
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 58
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 58
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 29 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 71
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 58
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 24 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 66
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 58
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 28 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 70
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 35 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 77
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 20 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 62
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 92
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 58 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 94
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 21 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 63
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 92
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
R ++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 28 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 70
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 50 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 86
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 60 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 96
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664
R ++ + +IG GSFG+VY+ ++G +VA+K +
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664
R ++ + +IG GSFG+VY+ ++G +VA+K +
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664
R ++ + +IG GSFG+VY+ ++G +VA+K +
Sbjct: 16 RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV 53
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
++ + +IG GSFG+VY+ ++G +VA+K + +++
Sbjct: 101 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR 137
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 239 FNGLSDLAWLSFEANNLGAEASNDLDFVFSL------------------TNCSKLEWLEL 280
F GL+ L WL+ + N L ++ D + L + ++L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 281 RKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLG-IGNLVNLNLFSLHLNQLIGTIP 339
NQ +LP + + + + + N+L +IP G L NL SL NQL ++P
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVP 171
Query: 340 H-VIGSLKNLQLLYLYGNSLE 359
H L LQ + L+GN +
Sbjct: 172 HGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 239 FNGLSDLAWLSFEANNLGAEASNDLDFVFSL------------------TNCSKLEWLEL 280
F GL+ L WL+ + N L ++ D + L + ++L+ L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 281 RKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLG-IGNLVNLNLFSLHLNQLIGTIP 339
NQ +LP + + + + + N+L +IP G L NL SL NQL ++P
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL-QSVP 171
Query: 340 H-VIGSLKNLQLLYLYGNSLE 359
H L LQ + L+GN +
Sbjct: 172 HGAFDRLGKLQTITLFGNQFD 192
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 239 FNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSK 298
F+ L +L L +N LGA D SLT +L L+L NQ LP + +
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFD---SLT---QLTVLDLGTNQLTV-LPSAVFDRLV 112
Query: 299 TMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH-VIGSLKNLQLLYLYGNS 357
+ + M NKL+ +P GI L +L +L NQL +IPH L +L YL+GN
Sbjct: 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP 170
Query: 358 LE 359
+
Sbjct: 171 WD 172
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 301 TIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEG 360
T +D +K ++P GI N + LH NQ+ P V SL NL+ LYL N L G
Sbjct: 22 TTVDC-RSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 361 NIP 363
+P
Sbjct: 78 ALP 80
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 639 IGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
+G G+FG VYK E G + A KVI + ++ E
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVE 66
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664
R ++ +G+G++GIV+K I G VVAVK I
Sbjct: 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKI 42
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 639 IGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
+G G+FG VYK E G + A KVI + ++ E
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVE 58
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 9 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 43
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGG 671
++++F +G G++ VYKG+ G+ VA+K + L+ + G
Sbjct: 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG 45
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 615 EQKFPFVSYAALRKATNEFSTS------NMIGQGSFGIVYKGIFSENGMVVAVK 662
+ +F S+ L+ TN F N +G+G FG+VYKG N VAVK
Sbjct: 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVK 60
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 615 EQKFPFVSYAALRKATNEFSTS------NMIGQGSFGIVYKGIFSENGMVVAVK 662
+ +F S+ L+ TN F N +G+G FG+VYKG N VAVK
Sbjct: 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVK 60
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 38
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 38
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 42
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 41
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
F IG+G++G+VYK G VVA+K I L+ +
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE 41
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 38
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 38
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 41
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 41
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 40
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 9 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 43
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 42
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 40
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
F IG+G++G+VYK G VVA+K I L+ +
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE 44
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
F IG+G++G+VYK G VVA+K I L+ +
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE 44
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
F IG+G++G+VYK G VVA+K I L+ +
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE 44
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 38
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 12 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 46
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 42
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 40
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 40
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 12 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 46
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+K I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLD 39
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 615 EQKFPFVSYAALRKATNEFSTS------NMIGQGSFGIVYKGIFSENGMVVAVK 662
+ +F S+ L+ TN F N +G+G FG+VYKG N VAVK
Sbjct: 3 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVK 54
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
F IG+G++G+VYK G VVA+K I L+ +
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE 42
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
F IG+G++G+VYK G VVA+K I L+ +
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTE 43
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENG----MVVAVKVIN 665
E ++G G+FG VYKGI+ G + VA+K++N
Sbjct: 38 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILN 76
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAV-KVINLNQKGGF 672
+++ IGQG+FG V+K + G VA+ KV+ N+K GF
Sbjct: 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGF 59
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 639 IGQGSFGIVYKGIFSENGMVVAV-KVINLNQKGGF 672
IGQG+FG V+K + G VA+ KV+ N+K GF
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGF 60
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENG----MVVAVKVINLN 667
E ++G G+FG VYKGI+ +G + VA+KV+ N
Sbjct: 17 TELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLREN 57
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENG----MVVAVKVIN 665
E ++G G+FG VYKGI+ G + VA+K++N
Sbjct: 15 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILN 53
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAV-KVINLNQKGGF 672
+++ IGQG+FG V+K + G VA+ KV+ N+K GF
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGF 60
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAV-KVINLNQKGGF 672
+++ IGQG+FG V+K + G VA+ KV+ N+K GF
Sbjct: 17 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGF 60
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 233 GKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHF 292
G+ S+ + +L E N+L + + D + SLT L L N+ +LP+
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ------LYLGGNKLQ-SLPNG 70
Query: 293 IANLSKTMTIIDMGENKLSGTIPLGI-GNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLL 351
+ N ++T +++ N+L ++P G+ L L +L+ NQL V L L+ L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129
Query: 352 YLYGNSLE 359
LY N L+
Sbjct: 130 RLYQNQLK 137
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 609 SNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
S+ ++E+ VS +K F IGQG+ G VY + G VA++ +NL Q
Sbjct: 1 SDEEILEKLRSIVSVGDPKKKYTRFEK---IGQGASGTVYTAMDVATGQEVAIRQMNLQQ 57
Query: 669 K 669
+
Sbjct: 58 Q 58
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 609 SNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
S+ ++E+ VS +K F IGQG+ G VY + G VA++ +NL Q
Sbjct: 1 SDEEILEKLRSIVSVGDPKKKYTRFEK---IGQGASGTVYTAMDVATGQEVAIRQMNLQQ 57
Query: 669 K 669
+
Sbjct: 58 Q 58
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 609 SNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
S+ ++E+ VS +K F IGQG+ G VY + G VA++ +NL Q
Sbjct: 2 SDEEILEKLRSIVSVGDPKKKYTRFEK---IGQGASGTVYTAMDVATGQEVAIRQMNLQQ 58
Query: 669 K 669
+
Sbjct: 59 Q 59
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 609 SNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
S+ ++E+ VS +K F IGQG+ G VY + G VA++ +NL Q
Sbjct: 1 SDEEILEKLRSIVSVGDPKKKYTRFEK---IGQGASGTVYTAMDVATGQEVAIRQMNLQQ 57
Query: 669 K 669
+
Sbjct: 58 Q 58
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
+F N++G+GSF VY+ G+ VA+K+I+
Sbjct: 12 DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMID 45
>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3C|B Chain B, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3E|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
pdb|4G3E|B Chain B, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
Length = 352
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 607 KDSNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
+D+ +L+ +K V Y R+ + + +G+GSFG V++ + G AVK + L
Sbjct: 51 EDNEGVLLTEKLKPVDYE-YREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL 109
Query: 667 N 667
Sbjct: 110 E 110
>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 2-(aminothiazoly)phenol (cmp2)
Length = 336
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 607 KDSNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
+D+ +L+ +K V Y R+ + + +G+GSFG V++ + G AVK + L
Sbjct: 35 EDNEGVLLTEKLKPVDYE-YREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL 93
Query: 667 N 667
Sbjct: 94 E 94
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 278 LELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGI-GNLVNLNLFSLHLNQLIG 336
L L NQ P +L++ +T +++ N+L+ +P+G+ L L +LH+NQL
Sbjct: 45 LHLYINQITKLEPGVFDSLTQ-LTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHINQLKS 102
Query: 337 TIPHVIGSLKNLQLLYLYGNSLE 359
V +LK+L +YL+ N +
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPWD 125
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 617 KFPFVSYAALRKATNEFSTS------NMIGQGSFGIVYKGIFSENGMVVAVK 662
+F S+ L+ TN F N G+G FG+VYKG N VAVK
Sbjct: 2 RFHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV--NNTTVAVK 51
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 49 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 81
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 25 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 57
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 51
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 47
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 50
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 49
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 49
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 47
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 47
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 19 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 51
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 8 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 49
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 41
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 49
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 48
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 47
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 639 IGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
+G G+FG VYK E ++ A KVI+ + ++ E
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE 84
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 49
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 17 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 49
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 16 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 48
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 12 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 44
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 639 IGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
+G G+FG VYK E ++ A KVI+ + ++ E
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE 84
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 50
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 64
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 50
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 64
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 40 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 72
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 21 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 53
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 18 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 50
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 317 GIGNLVNLNLFSLHLNQLIGTIPHVIGSLK---NLQLLYLYGNSLEGNIPSSXXXXXXXX 373
GI L N+ +L N+L H I +LK NL L L GN L+ +P+
Sbjct: 58 GIQYLPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNL 111
Query: 374 XXXXDFNNLQGNIPSSL-GSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLS 432
N ++P + NL L + HN+L +LP+ + + T +LDL NN L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQ 170
Query: 433 GYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSF 479
L L +L ++ N TSL ++++ N +
Sbjct: 171 SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 285 FGGNLPHFIANLSK--TMTIIDMGENKLSGTIPLGI-GNLVNLNLFSLHLNQLIGTIPHV 341
GGN H I+ L + +T + + N+L ++P G+ L NL L NQL V
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 342 IGSLKNLQLLYLYGNSLEG 360
L NL LYLY N L+
Sbjct: 129 FDKLTNLTYLYLYHNQLQS 147
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 639 IGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678
+G G+FG VYK E ++ A KVI+ + ++ E
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVE 84
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 54
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 47
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKV 663
EF ++G G+FG VYKG++ G V + V
Sbjct: 22 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPV 54
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 51
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 51
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 57
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 37/188 (19%)
Query: 303 IDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL--IGTIPHVIGSLKNLQLLYLYGNSLEG 360
+D N L+ T+ G+L L L +NQL + I + +K+LQ L + NS+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 361 NIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGT----LPQQILE 416
++ +G+ + ++L+ L +S N L T LP +I
Sbjct: 388 ------------------YDEKKGDCSWT----KSLLSLNMSSNILTDTIFRCLPPRIK- 424
Query: 417 IRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQG 476
LDL +N + +P +V L+ L L+++ N TSL+ +++
Sbjct: 425 ------VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477
Query: 477 NSFGGRIP 484
N + P
Sbjct: 478 NPWDCSCP 485
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 137 RIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPN 196
+P+ L Q ++ LN+ +N S + I ++S L ++ + NR++ + FN
Sbjct: 14 HVPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QE 70
Query: 197 LKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTG-KVSIDFNGLSDLAWLSFEANNL 255
L+ L ++ N L H NL L+L N F + +F +S L +L +L
Sbjct: 71 LEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 256 GAEA 259
+
Sbjct: 128 EKSS 131
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 609 SNSLLIEQKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
S+ ++E+ VS +K F IGQG+ G VY + G VA++ +NL Q
Sbjct: 2 SDEEILEKLRIIVSVGDPKKKYTRFEK---IGQGASGTVYTAMDVATGQEVAIRQMNLQQ 58
Query: 669 K 669
+
Sbjct: 59 Q 59
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 13 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 54
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 58
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 14 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 55
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 57
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 58
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN--LNQKGGFRSFVA 677
+E S IG GSFG VYKG + + V +KV++ Q FR+ VA
Sbjct: 35 ASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVA 84
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVIN 665
A + + S +GQGSFG+VY+G+ E VA+K +N
Sbjct: 45 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN 86
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
N+FS +IG+G FG VY ++ G + A+K ++
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
N+FS +IG+G FG VY ++ G + A+K ++
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
N+FS +IG+G FG VY ++ G + A+K ++
Sbjct: 188 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 222
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
N+FS +IG+G FG VY ++ G + A+K ++
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 286 GGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSL 345
G L NL +T+T I + +N + P L L NQ+ P L
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 346 KNLQLLYLYGNSL 358
++L L LYGN +
Sbjct: 80 RSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 286 GGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSL 345
G L NL +T+T I + +N + P L L NQ+ P L
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 346 KNLQLLYLYGNSL 358
++L L LYGN +
Sbjct: 80 RSLNSLVLYGNKI 92
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
VS A + + + +G+G++G VYK I + VA+K I L +
Sbjct: 24 VSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHE 72
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+ I L+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLD 39
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
F IG+G++G+VYK G VVA+ I L+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLD 38
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGF 672
+++F +++G+G++G+V G +VA+K I K F
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLF 52
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGF 672
+++F +++G+G++G+V G +VA+K I K F
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLF 52
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGF 672
+++F +++G+G++G+V G +VA+K I K F
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLF 52
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
P +Y + + + +G G +G VY+G++ + + VAVK +
Sbjct: 2 PSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK 48
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 25/161 (15%)
Query: 224 LNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKN 283
LN QN FT V + L L L + N L N N S LE L++ N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK----NFFKVALMTKNMSSLETLDVSLN 413
Query: 284 QFGGNLPHFIANLSKTMTIIDMGENKLSGT---------------------IPLGIGNLV 322
+ ++++ ++++ N L+G+ IP + +L
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 323 NLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIP 363
L ++ NQL V L +LQ ++L+ N + P
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 23/155 (14%)
Query: 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIY--NISSLEMIFLPA 179
S+ + +N + + L+ L+ L ++ N V++ N+SSLE + +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 180 NRL------------EGILPLNIGFN---------LPNLKSLIVAQNNLTGPIPHSLSNA 218
N L E IL LN+ N LP ++ NN IP +++
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHL 472
Query: 219 SNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253
L ELN+ N F+ L+ L ++ N
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 424 LDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRI 483
LDL NN + +P V +L+ L L+++ N TSL+Y+++ N +
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Query: 484 P 484
P
Sbjct: 514 P 514
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
P +Y + + + +G G +G VY+G++ + + VAVK +
Sbjct: 5 PSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK 51
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 624 AALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+L + ++ IGQGS+G+V I ++ + A+K++N N+
Sbjct: 19 GSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNK 63
>pdb|2GFT|A Chain A, Crystal Structure Of The E263a Nucleophile Mutant Of
Bacillus Licheniformis Endo-beta-1,4-galactanase In
Complex With Galactotriose
pdb|2GFT|B Chain B, Crystal Structure Of The E263a Nucleophile Mutant Of
Bacillus Licheniformis Endo-beta-1,4-galactanase In
Complex With Galactotriose
Length = 399
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 430 LLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIP 484
S Y PF G LKNL + S+ +G+ + A TS Y G+ G P
Sbjct: 229 FASSYYPFWHGTLKNLTSVLTSVADTYGK--KVMVAATSYTYTAEDGDGHGNTAP 281
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVK 662
++ IG+GS+G+V+K + G +VA+K
Sbjct: 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIK 34
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 36 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 68
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 25 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNV 56
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 25 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNV 56
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 29 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 61
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 37 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 69
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 37 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 69
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 13 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNV 44
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 395 NLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNH 454
NL L++SHN LN + + + L + LDLS+N L F +L+ L L + NH
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRY-LDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 455 FFGEIPATLSACTSLEYLYMQGNSFGGRIP 484
L+ LY+ N R P
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQI-SRFP 152
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSS-LGSC 393
+ L LQ LYL GN L+ +P NN +P+ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 394 QNLMELIVSHNKLNGTLPQQILEIRTLSF 422
+NL L++ N L T+P+ L F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPF 199
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 143 GQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIV 202
G L L L++ N + P+ + +L ++ + NRL LPL L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL-----GA 257
N L P L+ L +L+L N T + NGL +L L + N+L G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 258 EASNDLDFVF-----SLTNCSKL---EWLE 279
S+ L F F L NC L WL+
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSS-LGSC 393
+ L LQ LYL GN L+ +P NN +P+ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 394 QNLMELIVSHNKLNGTLPQQILEIRTLSF 422
+NL L++ N L T+P+ L F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPF 199
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 143 GQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIV 202
G L L L++ N + P+ + +L ++ + NRL LPL L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL-----GA 257
N L P L+ L +L+L N T + NGL +L L + N+L G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 258 EASNDLDFVF-----SLTNCSKL---EWLE 279
S+ L F F L NC L WL+
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 14 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 46
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 14 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 46
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665
+ + + +G G FG VY+G++ + + VAVK +
Sbjct: 11 TDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK 45
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 41
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 41
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 11 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 43
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667
+ + IG GSFG VYKG + + VAVK++N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVT 41
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQ 394
+ L LQ LYL GN L+ P NNL L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 395 NLMELIVSHNKLNGTLPQQILEIRTLSF 422
NL L++ N L T+P+ L F
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPF 199
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 143 GQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIV 202
G L L L++ N + P+ + +L ++ + NRL LPL L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL-----GA 257
N L P L+ L +L+L N+ T + NGL +L L + N+L G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 258 EASNDLDFVF-----SLTNCSKL---EWLE 279
S+ L F F L NC L WL+
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQ 394
+ L LQ LYL GN L+ P NNL L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 395 NLMELIVSHNKLNGTLPQQILEIRTLSF 422
NL L++ N L T+P+ L F
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPF 199
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 628 KATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
+ N+F IG GSFG +Y G + VA+K+ N+ K
Sbjct: 4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK 45
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSS-LGSC 393
+ L LQ LYL GN L+ +P NN +P+ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 394 QNLMELIVSHNKLNGTLPQQILEIRTLSF 422
+NL L++ N L T+P+ L F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPF 199
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 143 GQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIV 202
G L L L++ N + P+ + +L ++ + NRL LPL L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL-----GA 257
N L P L+ L +L+L N T + NGL +L L + N+L G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 258 EASNDLDFVF-----SLTNCSKL---EWLE 279
S+ L F F L NC L WL+
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSS-LGSC 393
+ L LQ LYL GN L+ +P NN +P+ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 394 QNLMELIVSHNKLNGTLPQQILEIRTLSF 422
+NL L++ N L T+P+ L F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPF 199
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Query: 143 GQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIV 202
G L L L++ N + P+ + +L ++ + NRL LPL L L+ L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYL 131
Query: 203 AQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL-----GA 257
N L P L+ L +L+L N T + NGL +L L + N+L G
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 258 EASNDLDFVF-----SLTNCSKL---EWLE 279
S+ L F F L NC L WL+
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 63 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 113
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQ 394
+ L LQ LYL GN L+ P NNL L +
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 173
Query: 395 NLMELIVSHNKLNGTLPQQILEIRTLSF 422
NL L++ N L T+P+ L F
Sbjct: 174 NLDTLLLQENSLY-TIPKGFFGSHLLPF 200
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQ 394
+ L LQ LYL GN L+ P NNL L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 395 NLMELIVSHNKLNGTLPQQILEIRTLSF 422
NL L++ N L T+P+ L F
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPF 199
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRAELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSSLGSCQ 394
+ L LQ LYL GN L+ P NNL L +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 395 NLMELIVSHNKLNGTLPQQILEIRTLSF 422
NL L++ N L T+P+ L F
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPF 199
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334
L+ EL K Q G LP + +D+ N+L ++PL L L + + N+L
Sbjct: 62 LDRCELTKLQVDGTLP--------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 335 IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSXXXXXXXXXXXXDFNNLQGNIPSS-LGSC 393
+ L LQ LYL GN L+ +P NN +P+ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 394 QNLMELIVSHNKLNGTLPQQILEIRTLSF 422
+NL L++ N L T+P+ L F
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPF 199
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 142 LGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSL- 200
L +L L L++E+N S +VP++ ++ L+ ++L N + + L L NL L
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRAL---AGLKNLDVLE 203
Query: 201 IVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLG---A 257
+ +Q L PI H SNL+ N +N V+ + +SD +E N+
Sbjct: 204 LFSQECLNKPINHQ----SNLVVPNTVKNTDGSLVTPEI--ISDDG--DYEKPNVKWHLP 255
Query: 258 EASNDLDFVF 267
E +N++ F+F
Sbjct: 256 EFTNEVSFIF 265
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
FS IG GSFG VY N VVA+K ++ + K
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK 53
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669
FS IG GSFG VY N VVA+K ++ + K
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK 92
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 68 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 110
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 48
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 36 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 73
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 37 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 74
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 36 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 73
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 36 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 73
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 56 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 93
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 36 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 73
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 48
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 37 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 74
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 51 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 88
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 37 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 74
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 23 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 60
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 24 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 61
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 37 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 74
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 48
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 23 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 60
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 43 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 80
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 24 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 61
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 75
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 24 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 61
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 51 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 88
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 9 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 51
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 48
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFR 673
++F + +G G+ G+V+K +G+V+A K+I+L K R
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIR 48
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 9 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 46
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 8 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 45
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 9 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 46
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 449 DISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPXXXXXXXXXXXXXXXRNNLSGKIP 508
D+S + F + + S T LE L + N +I N G I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339
Query: 509 EYL-ENLPFLQYLDLSYNHFEG 529
+ ENL L+ LDLSYNH
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 31 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 68
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 9 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 46
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPE-SLGQLRSLKFLNVEEN 156
SKL++L + N + + + +L+ D+GE I E + L +L++LN+
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 157 NFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLS 216
N +P ++ + L+ + L N L I P + L +L+ L + Q+ + ++
Sbjct: 196 NLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFD 252
Query: 217 NASNLIELNLGQNHFT 232
N +L+E+NL N+ T
Sbjct: 253 NLQSLVEINLAHNNLT 268
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 7 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 44
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 8 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 45
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 41
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 41
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 92 IGYSSWSKLEKLS---IAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSL 148
I +W L LS + N ++ P S L++L+ E L +GQL +L
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130
Query: 149 KFLNVEENNF-SGMVPVSIYNISSLEMIFLPANRLEGILPLNIGF 192
K LNV N S +P N+++L + L N ++ I ++ F
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668
+++ ++G G FG VY GI + + VA+K + ++
Sbjct: 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 41
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 104/271 (38%), Gaps = 67/271 (24%)
Query: 90 ADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLK 149
AD + L+ L+++ N L ++ L + D+ +N + ++ L L+
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 150 FLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNL--------------- 194
L++ +N + +I+ I S+ IFL N+L + +N+ NL
Sbjct: 366 TLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 195 -----PNLKSLIVAQNNLTG----------PIPHSLSNASNLIEL----NLGQNHFTGKV 235
P+L+ LI+ QN + P L N+++L L + F G
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 236 SID----------------FNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLE 279
+ F+ L+ L LS +N L + NDL + LE L+
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--------ANLEILD 532
Query: 280 LRKNQFGGNLPHFIANLSKTMTIIDMGENKL 310
+ +NQ P +LS ++D+ NK
Sbjct: 533 ISRNQLLAPNPDVFVSLS----VLDITHNKF 559
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 92 IGYSSWSKLEKLS---IAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSL 148
I +W L LS + N ++ P S L++L+ E L +GQL +L
Sbjct: 66 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 125
Query: 149 KFLNVEENNF-SGMVPVSIYNISSLEMIFLPANRLEGILPLNIGF 192
K LNV N S +P N+++L + L N ++ I ++ F
Sbjct: 126 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,373,487
Number of Sequences: 62578
Number of extensions: 738592
Number of successful extensions: 2690
Number of sequences better than 100.0: 295
Number of HSP's better than 100.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1883
Number of HSP's gapped (non-prelim): 551
length of query: 678
length of database: 14,973,337
effective HSP length: 105
effective length of query: 573
effective length of database: 8,402,647
effective search space: 4814716731
effective search space used: 4814716731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)