Query 038612
Match_columns 678
No_of_seqs 602 out of 5310
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-71 2.6E-76 652.8 48.5 623 33-666 27-725 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.7E-52 3.7E-57 491.1 33.8 426 122-552 118-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-39 3.8E-44 322.7 6.3 377 149-536 81-460 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.9E-38 1.5E-42 311.3 8.3 396 149-554 55-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.2E-40 6.8E-45 314.2 -15.4 449 78-551 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.7E-38 3.8E-43 302.4 -13.6 428 76-528 68-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.7E-34 3.6E-39 289.2 -3.3 368 95-504 4-375 (1255)
8 KOG0618 Serine/threonine phosp 100.0 1.8E-34 3.8E-39 302.4 -6.8 439 78-550 47-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.1E-33 6.7E-38 280.1 -3.2 369 122-532 7-379 (1255)
10 KOG0618 Serine/threonine phosp 100.0 2.8E-32 6.1E-37 285.9 -9.0 438 78-549 23-463 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.3E-23 2.9E-28 246.8 26.9 338 93-478 553-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.8E-23 3.8E-28 245.8 25.8 340 139-502 551-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 8.7E-26 1.9E-30 215.8 -3.0 278 98-382 67-358 (498)
14 KOG4237 Extracellular matrix p 99.9 1.6E-25 3.6E-30 213.9 -4.4 284 123-407 68-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.3E-20 9.3E-25 201.4 16.1 265 122-463 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.8E-20 1.1E-24 201.0 15.5 266 147-489 202-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.2E-19 6.9E-24 196.1 16.5 335 30-407 58-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.4E-23 191.9 11.6 247 146-456 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.7E-24 183.5 -2.0 129 103-232 3-150 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-19 6E-24 183.3 -2.0 228 81-311 3-263 (319)
21 KOG0617 Ras suppressor protein 99.7 1.7E-18 3.7E-23 147.1 -5.4 162 92-259 27-189 (264)
22 KOG0617 Ras suppressor protein 99.6 8.3E-18 1.8E-22 142.9 -3.9 162 320-511 31-192 (264)
23 PLN03150 hypothetical protein; 99.6 1.8E-14 3.9E-19 158.4 14.0 157 30-208 367-528 (623)
24 PLN03150 hypothetical protein; 99.5 1.9E-13 4E-18 150.4 11.7 118 444-564 419-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 5.9E-13 1.3E-17 134.4 -4.0 192 300-502 77-271 (722)
26 KOG4658 Apoptotic ATPase [Sign 99.2 2.2E-11 4.7E-16 136.8 5.7 150 76-227 523-676 (889)
27 KOG0532 Leucine-rich repeat (L 99.1 1.1E-12 2.4E-17 132.4 -5.1 195 321-526 74-271 (722)
28 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.9E-15 122.5 8.2 199 102-317 97-296 (394)
29 PF14580 LRR_9: Leucine-rich r 99.1 5.3E-11 1.1E-15 107.0 3.8 109 95-208 16-126 (175)
30 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.6E-16 120.4 -0.1 212 119-336 118-340 (505)
31 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.3E-15 121.2 8.0 201 125-342 96-297 (394)
32 KOG1909 Ran GTPase-activating 99.1 4.5E-12 9.9E-17 120.9 -4.0 91 437-527 207-310 (382)
33 KOG1187 Serine/threonine prote 99.1 9.2E-11 2E-15 119.9 5.0 61 617-678 61-121 (361)
34 KOG1909 Ran GTPase-activating 99.1 1.6E-11 3.5E-16 117.2 -1.0 38 94-131 26-67 (382)
35 KOG3207 Beta-tubulin folding c 99.0 4.5E-11 9.7E-16 117.4 0.5 212 167-407 118-339 (505)
36 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.5E-15 102.1 4.2 111 118-233 15-127 (175)
37 KOG1259 Nischarin, modulator o 98.9 1.5E-10 3.2E-15 108.0 -0.0 128 394-528 284-412 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.9E-14 121.6 6.4 132 94-229 519-652 (889)
39 KOG1259 Nischarin, modulator o 98.9 5.6E-10 1.2E-14 104.2 1.4 108 272-385 306-414 (490)
40 KOG0531 Protein phosphatase 1, 98.8 4.2E-10 9.1E-15 118.7 -1.1 245 120-410 70-321 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 4.7E-09 1E-13 77.4 2.9 59 468-526 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3.1E-13 74.8 4.5 61 346-406 1-61 (61)
43 KOG0531 Protein phosphatase 1, 98.7 2.8E-09 6.1E-14 112.5 -0.8 152 318-480 114-268 (414)
44 PF08263 LRRNT_2: Leucine rich 98.6 6.1E-08 1.3E-12 65.1 4.0 39 34-72 2-43 (43)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.7E-09 5.7E-14 99.8 -7.7 181 196-404 186-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.4 6.6E-09 1.4E-13 97.3 -5.8 155 99-253 186-348 (419)
47 KOG1859 Leucine-rich repeat pr 98.4 8.4E-09 1.8E-13 107.7 -6.2 180 363-553 102-294 (1096)
48 KOG2982 Uncharacterized conser 98.4 3.1E-08 6.7E-13 92.8 -2.3 86 144-230 69-157 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.7E-12 87.7 -0.4 120 166-286 88-227 (388)
50 KOG1859 Leucine-rich repeat pr 98.2 3.3E-08 7.2E-13 103.3 -5.6 175 97-285 83-291 (1096)
51 KOG0196 Tyrosine kinase, EPH ( 98.2 5.6E-07 1.2E-11 95.3 2.4 61 618-678 607-680 (996)
52 COG5238 RNA1 Ran GTPase-activa 98.2 3.6E-07 7.8E-12 84.7 -0.1 182 76-258 30-257 (388)
53 KOG2982 Uncharacterized conser 98.1 4.7E-07 1E-11 85.1 -0.2 64 345-408 198-263 (418)
54 KOG4579 Leucine-rich repeat (L 98.0 3.7E-07 8E-12 75.8 -3.1 79 424-504 58-136 (177)
55 KOG3653 Transforming growth fa 97.9 2.3E-06 4.9E-11 85.8 0.8 31 635-667 214-244 (534)
56 KOG4579 Leucine-rich repeat (L 97.9 7.5E-07 1.6E-11 74.0 -3.1 111 77-190 28-142 (177)
57 KOG3665 ZYG-1-like serine/thre 97.9 3.5E-06 7.6E-11 92.9 0.5 146 146-293 122-270 (699)
58 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.4E-10 68.6 6.0 106 122-229 42-150 (233)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 53.0 3.1 35 124-159 3-37 (44)
60 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 76.1 8.3 132 345-501 51-187 (426)
61 KOG0193 Serine/threonine prote 97.8 6.9E-06 1.5E-10 84.9 0.7 50 619-678 387-438 (678)
62 PF12799 LRR_4: Leucine Rich r 97.7 3.9E-05 8.5E-10 51.5 3.3 37 146-183 1-37 (44)
63 KOG2052 Activin A type IB rece 97.6 0.00015 3.2E-09 72.6 7.1 32 634-667 214-245 (513)
64 KOG4341 F-box protein containi 97.5 1.8E-06 4E-11 85.1 -7.0 135 271-405 292-437 (483)
65 KOG1025 Epidermal growth facto 97.5 3.8E-05 8.1E-10 82.3 2.0 46 633-678 698-748 (1177)
66 PRK15386 type III secretion pr 97.5 0.00028 6E-09 71.9 7.3 33 443-478 156-188 (426)
67 KOG3665 ZYG-1-like serine/thre 97.4 6.8E-05 1.5E-09 82.9 2.7 82 121-205 147-230 (699)
68 KOG4341 F-box protein containi 97.4 4.3E-06 9.4E-11 82.6 -6.1 83 99-181 139-227 (483)
69 PF13306 LRR_5: Leucine rich r 97.4 0.00053 1.1E-08 59.4 7.2 82 94-178 8-89 (129)
70 KOG1644 U2-associated snRNP A' 97.3 0.00041 8.8E-09 62.2 5.9 88 118-205 60-150 (233)
71 PF13306 LRR_5: Leucine rich r 97.3 0.00043 9.3E-09 59.9 6.1 106 116-227 6-111 (129)
72 PLN03224 probable serine/threo 97.3 0.00014 3.1E-09 77.7 3.2 39 629-667 143-197 (507)
73 KOG0658 Glycogen synthase kina 97.1 0.0003 6.5E-09 68.9 3.0 42 633-674 26-67 (364)
74 KOG2739 Leucine-rich acidic nu 97.0 0.00034 7.4E-09 65.5 2.4 40 120-159 63-104 (260)
75 KOG2739 Leucine-rich acidic nu 97.0 0.00029 6.4E-09 65.9 1.8 83 75-159 42-129 (260)
76 KOG1026 Nerve growth factor re 96.8 0.00031 6.7E-09 76.2 -0.2 43 636-678 491-539 (774)
77 KOG2123 Uncharacterized conser 96.6 0.0001 2.2E-09 69.1 -4.6 85 97-185 18-103 (388)
78 KOG2123 Uncharacterized conser 96.4 0.00013 2.9E-09 68.4 -5.1 101 121-225 18-123 (388)
79 KOG0192 Tyrosine kinase specif 96.3 0.0017 3.8E-08 66.4 1.9 30 636-667 46-76 (362)
80 PLN03225 Serine/threonine-prot 96.3 0.0038 8.2E-08 68.6 4.4 38 629-666 130-171 (566)
81 PRK09188 serine/threonine prot 96.3 0.0023 4.9E-08 65.5 2.4 36 630-665 17-53 (365)
82 KOG1947 Leucine rich repeat pr 96.1 0.00066 1.4E-08 73.8 -2.5 111 121-231 187-307 (482)
83 KOG0194 Protein tyrosine kinas 96.1 0.0021 4.6E-08 67.1 1.1 54 618-678 151-211 (474)
84 PTZ00284 protein kinase; Provi 96.1 0.0043 9.2E-08 67.1 3.5 45 622-666 120-164 (467)
85 KOG0663 Protein kinase PITSLRE 95.8 0.0054 1.2E-07 59.5 2.2 35 632-666 77-111 (419)
86 PTZ00036 glycogen synthase kin 95.5 0.01 2.3E-07 63.4 3.4 37 630-666 65-101 (440)
87 KOG4278 Protein tyrosine kinas 95.5 0.0034 7.4E-08 65.6 -0.3 46 632-678 268-313 (1157)
88 KOG0201 Serine/threonine prote 95.5 0.011 2.5E-07 59.4 3.3 33 633-665 15-47 (467)
89 KOG1095 Protein tyrosine kinas 95.5 0.0052 1.1E-07 69.6 1.0 45 634-678 695-745 (1025)
90 KOG0605 NDR and related serine 95.4 0.01 2.2E-07 61.4 2.7 41 628-668 138-178 (550)
91 cd05144 RIO2_C RIO kinase fami 95.4 0.021 4.5E-07 53.6 4.7 33 633-666 17-49 (198)
92 KOG0580 Serine/threonine prote 95.3 0.013 2.8E-07 54.3 2.9 36 631-666 22-57 (281)
93 PHA02988 hypothetical protein; 95.3 0.014 3E-07 58.4 3.4 43 618-667 12-54 (283)
94 cd05104 PTKc_Kit Catalytic dom 95.3 0.01 2.2E-07 62.1 2.5 35 632-666 36-75 (375)
95 cd06638 STKc_myosinIIIA Cataly 95.1 0.015 3.2E-07 58.2 3.1 47 620-666 7-53 (286)
96 cd06639 STKc_myosinIIIB Cataly 95.1 0.014 3.1E-07 58.5 2.8 46 621-666 12-57 (291)
97 PLN00034 mitogen-activated pro 95.1 0.011 2.5E-07 61.2 2.1 32 635-666 78-109 (353)
98 KOG0600 Cdc2-related protein k 95.0 0.013 2.7E-07 60.2 2.1 35 633-667 119-153 (560)
99 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.3E-07 32.9 0.8 12 148-159 2-13 (22)
100 PTZ00283 serine/threonine prot 94.9 0.019 4.2E-07 62.3 3.4 40 627-666 28-67 (496)
101 cd07877 STKc_p38alpha_MAPK14 C 94.9 0.032 6.9E-07 57.6 4.8 45 622-666 8-52 (345)
102 KOG0577 Serine/threonine prote 94.8 0.015 3.3E-07 60.7 2.0 40 633-672 28-67 (948)
103 KOG0694 Serine/threonine prote 94.8 0.035 7.6E-07 59.3 4.6 38 631-668 368-405 (694)
104 cd05622 STKc_ROCK1 Catalytic d 94.7 0.027 6E-07 58.7 3.8 44 623-666 35-78 (371)
105 cd05621 STKc_ROCK2 Catalytic d 94.6 0.03 6.6E-07 58.4 3.9 41 626-666 38-78 (370)
106 cd05596 STKc_ROCK Catalytic do 94.6 0.023 5.1E-07 59.3 3.0 38 629-666 41-78 (370)
107 PTZ00263 protein kinase A cata 94.6 0.035 7.5E-07 56.9 4.2 36 631-666 18-53 (329)
108 PF00560 LRR_1: Leucine Rich R 94.4 0.017 3.8E-07 32.0 0.8 12 493-504 2-13 (22)
109 cd06656 STKc_PAK3 Catalytic do 94.4 0.03 6.5E-07 56.4 3.1 37 631-667 19-55 (297)
110 KOG1947 Leucine rich repeat pr 94.3 0.006 1.3E-07 66.3 -2.3 39 272-310 268-307 (482)
111 cd05107 PTKc_PDGFR_beta Cataly 94.3 0.024 5.3E-07 59.6 2.3 35 633-667 39-78 (401)
112 cd06636 STKc_MAP4K4_6 Catalyti 94.3 0.046 9.9E-07 54.5 4.1 46 621-666 6-51 (282)
113 cd07878 STKc_p38beta_MAPK11 Ca 94.2 0.055 1.2E-06 55.8 4.6 36 631-666 15-50 (343)
114 KOG0197 Tyrosine kinases [Sign 94.0 0.023 4.9E-07 58.8 1.3 41 636-678 211-251 (468)
115 cd06659 STKc_PAK6 Catalytic do 94.0 0.033 7.1E-07 56.1 2.4 32 636-667 26-57 (297)
116 cd05105 PTKc_PDGFR_alpha Catal 93.8 0.04 8.6E-07 58.1 2.7 35 632-666 38-77 (400)
117 cd06635 STKc_TAO1 Catalytic do 93.8 0.044 9.6E-07 55.8 3.0 34 633-666 27-60 (317)
118 cd06657 STKc_PAK4 Catalytic do 93.7 0.036 7.9E-07 55.7 2.2 31 637-667 26-56 (292)
119 cd06647 STKc_PAK_I Catalytic d 93.7 0.044 9.5E-07 55.1 2.8 35 632-666 20-54 (293)
120 TIGR01982 UbiB 2-polyprenylphe 93.7 0.055 1.2E-06 57.4 3.5 31 636-667 122-152 (437)
121 cd06655 STKc_PAK2 Catalytic do 93.6 0.053 1.2E-06 54.6 3.2 35 632-666 20-54 (296)
122 PF03109 ABC1: ABC1 family; I 93.6 0.018 3.9E-07 48.6 -0.2 33 633-667 14-46 (119)
123 KOG4236 Serine/threonine prote 93.5 0.036 7.9E-07 57.1 1.7 31 636-666 569-599 (888)
124 cd06654 STKc_PAK1 Catalytic do 93.5 0.056 1.2E-06 54.4 3.2 36 632-667 21-56 (296)
125 smart00090 RIO RIO-like kinase 93.5 0.076 1.7E-06 51.2 3.8 33 634-667 31-65 (237)
126 cd07880 STKc_p38gamma_MAPK12 C 93.5 0.083 1.8E-06 54.5 4.4 37 630-666 14-50 (343)
127 cd06658 STKc_PAK5 Catalytic do 93.5 0.037 8.1E-07 55.6 1.7 31 637-667 28-58 (292)
128 KOG1035 eIF-2alpha kinase GCN2 93.4 0.026 5.7E-07 64.2 0.6 36 630-665 478-513 (1351)
129 KOG1006 Mitogen-activated prot 93.4 0.025 5.4E-07 53.3 0.3 42 619-667 59-100 (361)
130 cd06614 STKc_PAK Catalytic dom 93.3 0.044 9.6E-07 54.8 1.9 40 628-667 16-55 (286)
131 cd07876 STKc_JNK2 Catalytic do 93.3 0.086 1.9E-06 54.8 4.1 37 630-666 20-56 (359)
132 cd06607 STKc_TAO Catalytic dom 93.2 0.084 1.8E-06 53.4 3.9 35 632-666 16-50 (307)
133 cd06648 STKc_PAK_II Catalytic 93.2 0.06 1.3E-06 53.8 2.7 34 633-666 21-54 (285)
134 cd07879 STKc_p38delta_MAPK13 C 93.1 0.09 2E-06 54.2 4.0 36 631-666 15-50 (342)
135 PTZ00426 cAMP-dependent protei 93.1 0.098 2.1E-06 53.9 4.2 35 632-666 31-66 (340)
136 cd06618 PKc_MKK7 Catalytic dom 93.0 0.12 2.5E-06 52.1 4.5 36 632-667 16-51 (296)
137 PRK04750 ubiB putative ubiquin 93.0 0.096 2.1E-06 56.6 4.0 35 632-667 121-155 (537)
138 cd07874 STKc_JNK3 Catalytic do 92.9 0.1 2.3E-06 54.0 4.2 37 630-666 16-52 (355)
139 cd05106 PTKc_CSF-1R Catalytic 92.9 0.082 1.8E-06 55.3 3.3 35 632-666 39-78 (374)
140 KOG4308 LRR-containing protein 92.9 0.00049 1.1E-08 72.9 -13.3 83 100-182 89-184 (478)
141 KOG0199 ACK and related non-re 92.9 0.041 8.8E-07 58.9 0.9 42 637-678 116-161 (1039)
142 PHA03209 serine/threonine kina 92.6 0.12 2.7E-06 53.5 4.3 36 630-665 65-100 (357)
143 KOG4250 TANK binding protein k 92.6 0.035 7.5E-07 59.6 -0.0 34 633-666 15-48 (732)
144 KOG4257 Focal adhesion tyrosin 92.6 0.05 1.1E-06 57.5 1.1 45 634-678 392-441 (974)
145 PHA03211 serine/threonine kina 92.6 0.12 2.6E-06 55.3 4.1 33 632-664 170-202 (461)
146 cd07875 STKc_JNK1 Catalytic do 92.5 0.13 2.7E-06 53.6 4.2 37 630-666 23-59 (364)
147 cd05055 PTKc_PDGFR Catalytic d 92.5 0.074 1.6E-06 53.7 2.3 37 631-667 35-76 (302)
148 KOG0473 Leucine-rich repeat pr 92.4 0.0035 7.5E-08 57.6 -6.5 86 95-183 39-124 (326)
149 KOG0598 Ribosomal protein S6 k 92.2 0.08 1.7E-06 52.4 2.0 36 631-666 25-60 (357)
150 KOG0575 Polo-like serine/threo 92.2 0.15 3.3E-06 53.8 4.1 35 632-666 19-53 (592)
151 cd07851 STKc_p38 Catalytic dom 92.1 0.14 3E-06 52.8 3.8 37 630-666 14-50 (343)
152 cd06633 STKc_TAO3 Catalytic do 91.7 0.17 3.6E-06 51.5 3.8 34 633-666 23-56 (313)
153 KOG0591 NIMA (never in mitosis 91.4 0.05 1.1E-06 51.8 -0.4 32 635-667 23-55 (375)
154 KOG4308 LRR-containing protein 90.9 0.002 4.4E-08 68.3 -11.4 39 322-360 262-304 (478)
155 KOG0660 Mitogen-activated prot 90.8 0.13 2.9E-06 50.7 1.9 34 632-665 23-56 (359)
156 KOG3864 Uncharacterized conser 90.8 0.031 6.6E-07 50.6 -2.3 83 146-228 101-185 (221)
157 cd07850 STKc_JNK Catalytic dom 90.7 0.24 5.3E-06 51.2 4.0 35 631-665 16-50 (353)
158 KOG0581 Mitogen-activated prot 90.7 0.19 4.1E-06 49.9 2.9 41 619-666 74-114 (364)
159 PHA03212 serine/threonine kina 90.7 0.24 5.2E-06 52.0 3.9 35 631-665 92-126 (391)
160 KOG1166 Mitotic checkpoint ser 90.6 0.2 4.3E-06 57.2 3.3 35 631-666 698-732 (974)
161 cd06634 STKc_TAO2 Catalytic do 90.5 0.21 4.5E-06 50.6 3.1 34 633-666 17-50 (308)
162 KOG0574 STE20-like serine/thre 90.5 0.033 7.1E-07 53.2 -2.5 34 633-666 35-68 (502)
163 KOG0667 Dual-specificity tyros 90.3 0.29 6.2E-06 52.3 4.0 32 635-666 190-221 (586)
164 PF13504 LRR_7: Leucine rich r 90.3 0.19 4E-06 25.8 1.3 10 148-157 3-12 (17)
165 KOG0473 Leucine-rich repeat pr 90.2 0.0051 1.1E-07 56.5 -7.7 63 166-231 61-123 (326)
166 KOG0198 MEKK and related serin 90.2 0.26 5.7E-06 49.2 3.3 36 632-667 18-53 (313)
167 cd05101 PTKc_FGFR2 Catalytic d 89.5 0.18 4E-06 50.9 1.8 36 631-666 15-57 (304)
168 KOG0032 Ca2+/calmodulin-depend 89.2 0.28 6E-06 50.9 2.8 32 636-667 40-71 (382)
169 KOG1094 Discoidin domain recep 89.1 0.19 4.2E-06 52.9 1.5 42 636-678 543-585 (807)
170 KOG1163 Casein kinase (serine/ 88.7 0.42 9E-06 44.7 3.2 44 622-666 7-50 (341)
171 KOG1989 ARK protein kinase fam 88.7 0.22 4.7E-06 55.0 1.7 34 634-667 40-73 (738)
172 PRK09605 bifunctional UGMP fam 88.6 0.59 1.3E-05 51.4 5.0 40 623-664 325-364 (535)
173 KOG1167 Serine/threonine prote 88.5 0.18 3.9E-06 50.9 0.8 42 626-667 31-75 (418)
174 PHA03390 pk1 serine/threonine- 87.8 0.85 1.8E-05 45.0 5.2 42 625-666 8-51 (267)
175 smart00370 LRR Leucine-rich re 87.6 0.6 1.3E-05 27.0 2.4 19 170-189 2-20 (26)
176 smart00369 LRR_TYP Leucine-ric 87.6 0.6 1.3E-05 27.0 2.4 19 170-189 2-20 (26)
177 cd05098 PTKc_FGFR1 Catalytic d 87.5 0.29 6.4E-06 49.4 1.7 35 632-666 19-60 (307)
178 KOG0984 Mitogen-activated prot 86.7 0.32 6.9E-06 44.4 1.2 37 630-666 45-81 (282)
179 PTZ00266 NIMA-related protein 86.0 0.61 1.3E-05 54.0 3.3 38 629-666 11-48 (1021)
180 PTZ00267 NIMA-related protein 85.8 0.42 9.1E-06 51.8 1.9 34 633-666 69-103 (478)
181 smart00369 LRR_TYP Leucine-ric 85.3 0.69 1.5E-05 26.7 1.8 14 491-504 2-15 (26)
182 smart00370 LRR Leucine-rich re 85.3 0.69 1.5E-05 26.7 1.8 14 491-504 2-15 (26)
183 KOG3864 Uncharacterized conser 85.3 0.13 2.8E-06 46.7 -1.9 81 444-524 102-185 (221)
184 KOG0986 G protein-coupled rece 85.1 0.19 4.1E-06 51.3 -1.1 36 631-666 185-220 (591)
185 KOG1027 Serine/threonine prote 84.8 0.27 5.8E-06 54.1 -0.2 32 632-665 510-542 (903)
186 KOG0585 Ca2+/calmodulin-depend 84.5 1 2.2E-05 46.6 3.6 37 630-666 96-132 (576)
187 KOG0583 Serine/threonine prote 84.5 1 2.2E-05 46.7 3.8 36 631-666 17-52 (370)
188 PF08693 SKG6: Transmembrane a 84.4 2.2 4.8E-05 27.5 3.9 7 578-584 16-22 (40)
189 COG0661 AarF Predicted unusual 84.4 0.61 1.3E-05 50.1 2.3 31 636-667 130-160 (517)
190 KOG4721 Serine/threonine prote 84.2 0.41 8.8E-06 50.3 0.8 39 619-666 119-157 (904)
191 KOG0615 Serine/threonine prote 83.9 1.1 2.5E-05 45.3 3.7 31 636-666 177-207 (475)
192 PF13516 LRR_6: Leucine Rich r 83.2 0.43 9.3E-06 27.0 0.3 17 273-289 2-18 (24)
193 PHA03207 serine/threonine kina 82.9 1.4 3E-05 46.4 4.2 35 632-666 93-129 (392)
194 KOG0592 3-phosphoinositide-dep 82.5 0.67 1.4E-05 48.6 1.5 36 630-665 72-107 (604)
195 KOG0696 Serine/threonine prote 82.0 0.61 1.3E-05 47.0 1.0 47 620-667 339-385 (683)
196 KOG1165 Casein kinase (serine/ 81.3 1.1 2.4E-05 44.1 2.4 33 632-664 29-61 (449)
197 PRK10359 lipopolysaccharide co 80.9 1 2.2E-05 42.9 2.1 36 630-667 30-65 (232)
198 KOG4258 Insulin/growth factor 79.9 1.4 2.9E-05 48.7 2.8 31 621-652 985-1015(1025)
199 KOG1151 Tousled-like protein k 79.3 0.33 7.2E-06 49.2 -1.8 30 636-665 468-497 (775)
200 KOG1164 Casein kinase (serine/ 79.2 2.5 5.3E-05 43.1 4.4 35 632-666 19-54 (322)
201 KOG0666 Cyclin C-dependent kin 78.6 0.66 1.4E-05 45.1 0.1 35 633-667 26-64 (438)
202 KOG0200 Fibroblast/platelet-de 78.4 1.3 2.7E-05 49.5 2.2 36 632-667 297-339 (609)
203 KOG1024 Receptor-like protein 77.0 3.9 8.4E-05 41.3 4.7 41 625-665 278-323 (563)
204 KOG0582 Ste20-like serine/thre 76.8 2.6 5.7E-05 43.2 3.6 32 635-666 30-61 (516)
205 COG2112 Predicted Ser/Thr prot 75.0 3 6.5E-05 37.6 3.1 32 636-669 27-58 (201)
206 KOG0669 Cyclin T-dependent kin 74.9 0.15 3.2E-06 47.8 -5.2 29 636-664 22-50 (376)
207 KOG0983 Mitogen-activated prot 74.5 4 8.6E-05 39.2 3.9 31 637-667 98-128 (391)
208 KOG4279 Serine/threonine prote 74.5 2.2 4.8E-05 46.3 2.5 32 635-666 579-610 (1226)
209 KOG0664 Nemo-like MAPK-related 73.0 1.4 3.1E-05 41.9 0.6 32 633-664 55-86 (449)
210 KOG0579 Ste20-like serine/thre 72.0 0.55 1.2E-05 50.0 -2.5 30 638-667 39-68 (1187)
211 KOG4242 Predicted myosin-I-bin 69.0 13 0.00028 38.7 6.4 19 299-317 215-233 (553)
212 KOG0610 Putative serine/threon 66.7 4.6 0.0001 41.1 2.7 34 633-666 79-112 (459)
213 PHA03210 serine/threonine kina 66.2 2.7 5.9E-05 45.8 1.2 24 630-653 147-170 (501)
214 KOG2345 Serine/threonine prote 65.9 1.7 3.8E-05 41.0 -0.3 33 633-666 23-56 (302)
215 KOG0578 p21-activated serine/t 64.8 5.7 0.00012 42.1 3.1 31 635-665 277-307 (550)
216 KOG4242 Predicted myosin-I-bin 64.6 34 0.00075 35.8 8.3 60 347-406 414-480 (553)
217 KOG0612 Rho-associated, coiled 64.4 1.9 4E-05 49.6 -0.5 43 624-666 68-110 (1317)
218 smart00365 LRR_SD22 Leucine-ri 63.4 5.9 0.00013 23.0 1.6 14 146-159 2-15 (26)
219 KOG0611 Predicted serine/threo 62.5 2.3 4.9E-05 43.0 -0.3 30 638-667 60-89 (668)
220 smart00364 LRR_BAC Leucine-ric 62.1 5.5 0.00012 23.1 1.3 13 492-504 3-15 (26)
221 PF04478 Mid2: Mid2 like cell 61.9 9.9 0.00021 33.0 3.4 12 630-641 111-122 (154)
222 KOG1235 Predicted unusual prot 60.0 7.3 0.00016 42.1 2.9 49 617-667 136-196 (538)
223 PTZ00382 Variant-specific surf 59.9 20 0.00044 28.7 4.8 26 577-602 69-94 (96)
224 KOG0587 Traf2- and Nck-interac 59.6 6.1 0.00013 44.3 2.3 46 623-668 11-56 (953)
225 KOG0690 Serine/threonine prote 58.5 4.3 9.3E-05 39.9 0.8 37 630-666 167-203 (516)
226 KOG0616 cAMP-dependent protein 57.4 8.9 0.00019 37.4 2.7 34 633-666 46-79 (355)
227 KOG0607 MAP kinase-interacting 55.5 5.2 0.00011 39.3 0.8 40 622-666 74-113 (463)
228 KOG0576 Mitogen-activated prot 52.5 5.6 0.00012 43.2 0.6 33 633-665 17-49 (829)
229 PF14575 EphA2_TM: Ephrin type 51.9 6 0.00013 30.1 0.5 18 619-636 55-72 (75)
230 smart00368 LRR_RI Leucine rich 51.8 10 0.00022 22.3 1.4 15 273-287 2-16 (28)
231 KOG4645 MAPKKK (MAP kinase kin 51.5 6.7 0.00014 46.1 1.0 38 628-665 1232-1269(1509)
232 PF08693 SKG6: Transmembrane a 49.6 19 0.00041 23.4 2.4 23 576-598 10-33 (40)
233 KOG0596 Dual specificity; seri 49.2 3.1 6.7E-05 44.0 -1.8 42 636-678 366-409 (677)
234 KOG1152 Signal transduction se 46.8 20 0.00043 38.5 3.5 35 632-666 562-596 (772)
235 PF15102 TMEM154: TMEM154 prot 46.5 23 0.00051 30.5 3.2 9 576-584 58-66 (146)
236 PRK01723 3-deoxy-D-manno-octul 45.6 27 0.00059 33.6 4.1 30 635-666 35-65 (239)
237 PF08374 Protocadherin: Protoc 44.8 24 0.00052 32.5 3.3 26 572-597 36-61 (221)
238 PF05454 DAG1: Dystroglycan (D 44.5 7.4 0.00016 38.2 0.0 16 613-628 186-201 (290)
239 KOG0695 Serine/threonine prote 43.5 8.2 0.00018 38.0 0.1 36 631-666 250-285 (593)
240 KOG0671 LAMMER dual specificit 42.8 7.8 0.00017 39.1 -0.1 37 630-666 88-124 (415)
241 PF13095 FTA2: Kinetochore Sim 42.8 32 0.00069 32.1 3.8 32 631-664 37-69 (207)
242 TIGR00864 PCC polycystin catio 42.5 13 0.00029 47.5 1.7 37 497-533 1-37 (2740)
243 KOG1345 Serine/threonine kinas 40.4 11 0.00024 36.3 0.5 46 632-678 25-70 (378)
244 KOG0586 Serine/threonine prote 38.6 32 0.00068 37.2 3.5 38 630-667 55-92 (596)
245 KOG1033 eIF-2alpha kinase PEK/ 37.8 6.6 0.00014 41.4 -1.5 36 630-665 48-83 (516)
246 KOG3763 mRNA export factor TAP 37.4 16 0.00035 38.9 1.2 65 441-505 216-284 (585)
247 KOG0670 U4/U6-associated splic 34.8 31 0.00067 36.6 2.7 30 638-667 439-468 (752)
248 smart00367 LRR_CC Leucine-rich 32.2 33 0.00071 19.6 1.4 14 514-527 1-14 (26)
249 PF01034 Syndecan: Syndecan do 30.4 17 0.00037 26.3 0.0 7 578-584 13-19 (64)
250 PF09919 DUF2149: Uncharacteri 30.2 42 0.00092 26.6 2.2 21 639-662 70-91 (92)
251 KOG3763 mRNA export factor TAP 29.4 29 0.00063 37.1 1.5 64 169-232 217-283 (585)
252 KOG4717 Serine/threonine prote 28.2 24 0.00053 37.3 0.7 30 635-666 22-53 (864)
253 PHA03265 envelope glycoprotein 26.5 32 0.00069 34.2 1.1 28 576-603 349-376 (402)
254 KOG0584 Serine/threonine prote 26.0 23 0.00049 38.4 0.0 25 636-660 45-69 (632)
255 KOG0668 Casein kinase II, alph 25.6 21 0.00045 33.6 -0.3 30 636-666 43-73 (338)
256 TIGR01478 STEVOR variant surfa 23.9 34 0.00074 33.1 0.8 6 594-599 277-282 (295)
257 PF01299 Lamp: Lysosome-associ 22.0 41 0.0009 33.8 1.0 26 579-604 275-300 (306)
258 PRK14051 negative regulator Gr 21.7 1E+02 0.0022 24.9 2.8 20 636-655 28-47 (123)
259 COG0478 RIO-like serine/threon 20.7 1.1E+02 0.0025 29.9 3.6 31 636-667 96-126 (304)
260 PRK09550 mtnK methylthioribose 20.7 1.1E+02 0.0024 32.0 3.9 29 637-665 32-60 (401)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-71 Score=652.78 Aligned_cols=623 Identities=31% Similarity=0.538 Sum_probs=398.0
Q ss_pred CHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccccccCCCCcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCC
Q 038612 33 NETDRLALLAIKSQFHDPLEVTSSWDTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHL 110 (678)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~ 110 (678)
.++|+.||++||+++.+|.+.+.+|+...+||.|.||.|+. ..+|+.++++++.+.+. ..+..+++|+.|+|++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 56899999999999988888889998888999999999975 46899999988776543 1233334444444444433
Q ss_pred ccccChhh-----------------------cCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCccccc
Q 038612 111 RGQLPASI-----------------------GNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIY 167 (678)
Q Consensus 111 ~~~~~~~l-----------------------~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 167 (678)
.+.+|..+ +.+++|++|++++|.+.+.+|..++++++|++|+|++|.+.+.+|..+.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 33333221 1344555555555555555555555555555555555555555555555
Q ss_pred CCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCe
Q 038612 168 NISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAW 247 (678)
Q Consensus 168 ~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 247 (678)
++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..++++++|++|++++|++++..|..+.++++|+.
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 555555555555555555555444 4555555555555555445555555555555555555544444444444444444
Q ss_pred EEcccCcccccCCCCc------------------ccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcc
Q 038612 248 LSFEANNLGAEASNDL------------------DFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENK 309 (678)
Q Consensus 248 L~l~~n~l~~~~~~~~------------------~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~ 309 (678)
|++++|.+.+..+..+ .++..+..+++|+.|++++|.+.+..|..+..++. |+.|++++|.
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~ 343 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNK 343 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC-CCEEECcCCC
Confidence 4444444332211100 11223445556666666666666556655555554 6666666666
Q ss_pred eeccCCccCcCCccccccccccceeeeccCc------------------------ccCCCcccceeeccCccccccCCcc
Q 038612 310 LSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH------------------------VIGSLKNLQLLYLYGNSLEGNIPSS 365 (678)
Q Consensus 310 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~ 365 (678)
+.+.+|..+..+++|+.|++++|++.+.+|. .++.+++|+.|++++|.+++.+|..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 6655555555555555555555555554444 4445555555555555555555555
Q ss_pred ccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccC
Q 038612 366 LGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNL 445 (678)
Q Consensus 366 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L 445 (678)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ....+ +.|++++|++++..|..+.++++|
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc-eEEECcCCccCCccChhhhhhhcc
Confidence 5556666666666666665555555566666666666666666555543 33455 788999999999999899999999
Q ss_pred CeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcC
Q 038612 446 ARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYN 525 (678)
Q Consensus 446 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 525 (678)
++|+|++|++.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCCccCCCCceeccCCCCCcccCCCCCCCCCCCCCCCCCceeeEEEEeehhhHHHHHHHHHhhhhheeeccC-
Q 038612 526 HFEGQVPAKGVFHNKTSISLVGNENLCGGLDELHLPSCPLKGSRKSKVTFLVKVIIPVIMSCLILSACFLVVYARRRRS- 604 (678)
Q Consensus 526 ~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~- 604 (678)
++.|.+|..+.+..+....+.||+.+|+.......++|.... +.......+++++++++++++++++++++|+|+.
T Consensus 582 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (968)
T PLN00113 582 HLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR---KTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNL 658 (968)
T ss_pred cceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcccc---ccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998888888888999999999875444556664221 1111111121112222222222222222222221
Q ss_pred c-CcCC--cchhhc-----cCCceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 605 A-HKDS--NSLLIE-----QKFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 605 ~-~~~~--~~~~~~-----~~~~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
. ++.+ ...+.. .....++++++. ..|.+.++||+|+||.||||+...+|..||||+++.
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~ 725 (968)
T PLN00113 659 ELKRVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEIND 725 (968)
T ss_pred cccccccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccC
Confidence 1 1111 000000 011224455544 457888999999999999999855569999999964
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-52 Score=491.09 Aligned_cols=426 Identities=34% Similarity=0.553 Sum_probs=356.7
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEE
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
++|++|++++|.+++.+|. +.+++|++|+|++|.+++.+|..++++++|++|++++|.+.+.+|..+. .+++|++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~ 194 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLT 194 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeee
Confidence 4799999999999988885 5689999999999999999999999999999999999999999999887 899999999
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCc------------------
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDL------------------ 263 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------ 263 (678)
+++|.+++.+|..++++++|+.|++++|++.+.+|..+.++++|++|++++|.+.+..+..+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 99999999999999999999999999999999999999999999999999998875443211
Q ss_pred ccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccC
Q 038612 264 DFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIG 343 (678)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 343 (678)
..+..+..+++|++|++++|.+.+.+|.++..++. |+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCC-CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 12334566778888888888888888888888876 99999999999999999999999999999999999999999999
Q ss_pred CCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceE
Q 038612 344 SLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQ 423 (678)
Q Consensus 344 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 423 (678)
.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..++.+ +.
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~ 432 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YF 432 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CE
Confidence 99999999999999988777777776777777777776666666666666666666666666665555555555554 44
Q ss_pred EEcCCCcccccCCccccC-----------------------cccCCeeecccCcccccCCccccCCCCCCEEECcCCccc
Q 038612 424 LDLSNNLLSGYLPFRVGN-----------------------LKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFG 480 (678)
Q Consensus 424 L~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 480 (678)
|++++|.+++.++..+.. .++|+.|++++|++++..|..+..+++|++|+|++|++.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 555555554444433322 356777777777777778888888899999999999999
Q ss_pred cccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC-CccCCCCceeccCCCCCc
Q 038612 481 GRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK-GVFHNKTSISLVGNENLC 552 (678)
Q Consensus 481 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc 552 (678)
+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|.. ..+..++.+++.+|+..+
T Consensus 513 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999999999988854 446678899999988544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-39 Score=322.68 Aligned_cols=377 Identities=22% Similarity=0.231 Sum_probs=280.2
Q ss_pred CEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccC
Q 038612 149 KFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQ 228 (678)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 228 (678)
++||+++|.+..+.+..|.++++|+++++.+|.++ .+|.... ...+|+.|+|.+|.|+..-.+.+..++.|+.|||+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 33555555555555555555555555555555555 4444332 344455555555555544445555555555555555
Q ss_pred CcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCc
Q 038612 229 NHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGEN 308 (678)
Q Consensus 229 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n 308 (678)
|.++......|..-.++++|+|++|.++....+ .|..+.+|..|.|++|+++..-+..|..++. |+.|+|..|
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~------~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN 231 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETG------HFDSLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRN 231 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccc------cccccchheeeecccCcccccCHHHhhhcch-hhhhhcccc
Confidence 555555555555555555555555555554433 3444556666677777766444445555665 777777777
Q ss_pred ceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCC
Q 038612 309 KLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPS 388 (678)
Q Consensus 309 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 388 (678)
++.-.--..|..+++|+.|.+..|++...-..+|..+.++++|+|+.|++...-..++.++++|++|++++|.|...-++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 77644455788899999999999999877777889999999999999999877778889999999999999999988888
Q ss_pred CCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCc---cccC
Q 038612 389 SLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPA---TLSA 465 (678)
Q Consensus 389 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~ 465 (678)
.+..+++|++|+|++|++..--+..+..+..+ +.|.|++|.+...-...|..+++|++|||++|.++..+.+ .|.+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 99999999999999999985555566666666 8899999999977778889999999999999999876654 4778
Q ss_pred CCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCc
Q 038612 466 CTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGV 536 (678)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 536 (678)
+++|+.|++.+|++..+...+|.+++.|+.|||.+|.|....|.+|..+ .|+.|.+..-.+.+++.-.+.
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHH
Confidence 9999999999999998878899999999999999999999999999998 899998887777776654433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-38 Score=311.33 Aligned_cols=396 Identities=21% Similarity=0.204 Sum_probs=334.7
Q ss_pred CEEEcccccccccCcccccCC--CCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEec
Q 038612 149 KFLNVEENNFSGMVPVSIYNI--SSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNL 226 (678)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 226 (678)
+.||.+++.+....-..+... +.-+.||+++|++...-+..+. ++++|+++++..|.++ .+|.......+|+.|+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHh-cCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 345555555443222222222 2346799999999965555554 9999999999999998 67776666678999999
Q ss_pred cCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEcc
Q 038612 227 GQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMG 306 (678)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~ 306 (678)
.+|.++......+..++.|+.|+|+.|.++..... .+..-.++++|+|++|.|+..-...|..+. +|..|.|+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~------sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLs 205 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKP------SFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLS 205 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCC------CCCCCCCceEEeeccccccccccccccccc-hheeeecc
Confidence 99999988888999999999999999999887654 456667899999999999988888888887 59999999
Q ss_pred CcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccC
Q 038612 307 ENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNI 386 (678)
Q Consensus 307 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 386 (678)
.|+++...+..|.++++|+.|+|..|++.-..--.|.++++|+.|.+..|.+...-...|..+.++++|+|+.|++...-
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 99999877788899999999999999987554567899999999999999999888888999999999999999999877
Q ss_pred CCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCC
Q 038612 387 PSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSAC 466 (678)
Q Consensus 387 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l 466 (678)
..++.++++|+.|++++|.+...-++.+.-.+++ ..|+|++|+++...+..|..+..|++|+|++|++...-...|..+
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccc-eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 7888999999999999999987777777767777 899999999999999999999999999999999987667788999
Q ss_pred CCCCEEECcCCccccccCc---cccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCce
Q 038612 467 TSLEYLYMQGNSFGGRIPL---SLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSI 543 (678)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~ 543 (678)
++|+.|||++|.++..+.+ .|.++++|+.|++.+|++....-.+|..++.|+.|||.+|.+-..-|..-....++.+
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKEL 444 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhh
Confidence 9999999999999977644 6788999999999999999777789999999999999999998665543222256666
Q ss_pred eccCCCCCccc
Q 038612 544 SLVGNENLCGG 554 (678)
Q Consensus 544 ~~~~n~~lc~~ 554 (678)
.+.....+|.+
T Consensus 445 v~nSssflCDC 455 (873)
T KOG4194|consen 445 VMNSSSFLCDC 455 (873)
T ss_pred hhcccceEEec
Confidence 66666677765
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-40 Score=314.21 Aligned_cols=449 Identities=29% Similarity=0.408 Sum_probs=357.6
Q ss_pred EEEEEcCCCCCCCc-ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccc
Q 038612 78 VTELYLRNQSLGAD-IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEEN 156 (678)
Q Consensus 78 v~~l~l~~~~l~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 156 (678)
+..+.++.|++... ..+.++..+.+|++++|.+. .+|.+++.+..++.|+.++|.+. .+|+.+..+.+|+.|+.++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc
Confidence 45667777776543 45778888999999999987 78889999999999999999988 78889999999999999999
Q ss_pred cccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccC
Q 038612 157 NFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVS 236 (678)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 236 (678)
.+. ..|+.++.+..|+.++..+|++. ..|.+++ .+.+|..+++.+|+++...|..+. |+.|++||...|-+. .+|
T Consensus 125 ~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 125 ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cee-ecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 988 78888999999999999999988 6788887 788999999999999855554444 899999999888765 677
Q ss_pred CCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHh-hccccCcEEEccCcceeccCC
Q 038612 237 IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIA-NLSKTMTIIDMGENKLSGTIP 315 (678)
Q Consensus 237 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~-~~~~~L~~L~L~~n~l~~~~~ 315 (678)
..++.+.+|+.|++..|.+... +.|.+|+.|+++.++.|.+. .+|.... +++ ++.+||+.+|++. ..|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~l--------Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFL--------PEFPGCSLLKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hhhcchhhhHHHHhhhcccccC--------CCCCccHHHHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccc-cCc
Confidence 7899999999999999987653 36888999999999998886 6777666 555 4999999999998 788
Q ss_pred ccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccC---------------------------------
Q 038612 316 LGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNI--------------------------------- 362 (678)
Q Consensus 316 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------------- 362 (678)
+.+..+++|+.||+++|.+++ .|..++++ +|+.|.+.+|.+...-
T Consensus 269 de~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 888889999999999998884 56678888 8999999888664210
Q ss_pred ----Cc----cccCCCCCcEEeccCCccCccCCCCCCCcC---CCceEecCCCccccccCcccccccccceEEEcCCCcc
Q 038612 363 ----PS----SLGNLTLLTKLALDFNNLQGNIPSSLGSCQ---NLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLL 431 (678)
Q Consensus 363 ----~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l 431 (678)
+. ....+.+.+.|+++.-+++ .+|+....-. -.+..+++.|++. ++|..+..+..+...+.+++|.+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 00 0112334566666666666 3443332222 2667788888887 77877777766655566666655
Q ss_pred cccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccC
Q 038612 432 SGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYL 511 (678)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 511 (678)
+ .+|..+..+++|+.|+|++|-+. .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.++|++....|+.+
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 5 77888889999999999998876 78888899999999999999886 677777777778888888899987777779
Q ss_pred CCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCC
Q 038612 512 ENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENL 551 (678)
Q Consensus 512 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~l 551 (678)
.++.+|.+||+.+|.+....|..+.+.+++.+.+.|||+-
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999999999876677788999999999999854
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-38 Score=302.35 Aligned_cols=428 Identities=30% Similarity=0.453 Sum_probs=362.9
Q ss_pred CcEEEEEcCCCCCCCc-ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcc
Q 038612 76 QRVTELYLRNQSLGAD-IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVE 154 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 154 (678)
..++.+++..+.+... ++++.+..++.|+.++|++. .+|..+..+.+|+.|++++|.+. .+|++++.+..|+.|+..
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 4577888888877654 56788899999999999998 88999999999999999999998 788899999999999999
Q ss_pred cccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceec
Q 038612 155 ENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGK 234 (678)
Q Consensus 155 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 234 (678)
+|+++ ..|..+.++.+|..+++.+|.++ ..|++.. .++.|++||...|-++ .+|+.++.+.+|..|++..|.+. .
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence 99998 88999999999999999999999 5565555 5999999999999887 78999999999999999999987 4
Q ss_pred cCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccC
Q 038612 235 VSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTI 314 (678)
Q Consensus 235 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 314 (678)
.| .|.++..|.+++++.|.+...... ...+++++.+||+++|++. +.|..+.-+.. |+.||+++|.++ .+
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~~lpae------~~~~L~~l~vLDLRdNklk-e~Pde~clLrs-L~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIEMLPAE------HLKHLNSLLVLDLRDNKLK-EVPDEICLLRS-LERLDLSNNDIS-SL 290 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHHhhHHH------Hhcccccceeeeccccccc-cCchHHHHhhh-hhhhcccCCccc-cC
Confidence 55 799999999999999998876542 4568899999999999987 88988888875 999999999999 67
Q ss_pred CccCcCCccccccccccceeeec--------------------------------------cCcc---cCCCcccceeec
Q 038612 315 PLGIGNLVNLNLFSLHLNQLIGT--------------------------------------IPHV---IGSLKNLQLLYL 353 (678)
Q Consensus 315 ~~~l~~l~~L~~L~l~~n~~~~~--------------------------------------~~~~---~~~l~~L~~L~l 353 (678)
|..++++ +|+.|.+.+|.+... .+.. .....+.+.|++
T Consensus 291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence 8889999 999999999876321 0011 123456788899
Q ss_pred cCccccccCCccccCC---CCCcEEeccCCccCccCCCCCCCcCCCce-EecCCCccccccCcccccccccceEEEcCCC
Q 038612 354 YGNSLEGNIPSSLGNL---TLLTKLALDFNNLQGNIPSSLGSCQNLME-LIVSHNKLNGTLPQQILEIRTLSFQLDLSNN 429 (678)
Q Consensus 354 ~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n 429 (678)
++-+++ .+|+.+..- .-...++++.|++. .+|..+..+..+.+ +.+++|.++ -+|..+..++.+ ..|++++|
T Consensus 370 s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL-t~L~L~NN 445 (565)
T KOG0472|consen 370 SDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL-TFLDLSNN 445 (565)
T ss_pred cccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc-eeeecccc
Confidence 888887 455544322 23788999999998 67877777666554 455555554 788888899988 88999999
Q ss_pred cccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCc
Q 038612 430 LLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPE 509 (678)
Q Consensus 430 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 509 (678)
.+. .+|..++.+..|+.||++.|+|. .+|..+..+..|+.+-.++|++....+..+.++.+|.+||+.+|.+. .+|.
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 887 57888889999999999999997 88988888888888888889998777777999999999999999999 7888
Q ss_pred cCCCCCCCCEEeCCcCcce
Q 038612 510 YLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 510 ~l~~l~~L~~L~l~~n~l~ 528 (678)
.++++.+|++|++.+|++.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 9999999999999999997
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-34 Score=289.20 Aligned_cols=368 Identities=25% Similarity=0.375 Sum_probs=254.3
Q ss_pred CCCCCCCEEECCCCCCc-cccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCc
Q 038612 95 SSWSKLEKLSIAVNHLR-GQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLE 173 (678)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (678)
+-++-.|-.|+++|.++ +..|..+..+++++-|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 34566677778888887 568888889999999999888887 78888999999999999999887 5566788889999
Q ss_pred EEECCCCCCC-ccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEccc
Q 038612 174 MIFLPANRLE-GILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEA 252 (678)
Q Consensus 174 ~L~l~~n~~~-~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 252 (678)
.+++..|++. .-+|.+++ .+..|+.|||++|+++ ..|..+..-+++-.|+|++|++..+...-|.+++.|-.|+|++
T Consensus 82 sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 9999888875 34788888 8999999999999988 6888888888999999999998876666677788887888877
Q ss_pred CcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccc
Q 038612 253 NNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLN 332 (678)
Q Consensus 253 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 332 (678)
|.+...++ ....+.+|++|+|++|.+.-. -...+..+++|+.|.+++.
T Consensus 160 NrLe~LPP-------Q~RRL~~LqtL~Ls~NPL~hf-------------------------QLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 160 NRLEMLPP-------QIRRLSMLQTLKLSNNPLNHF-------------------------QLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred chhhhcCH-------HHHHHhhhhhhhcCCChhhHH-------------------------HHhcCccchhhhhhhcccc
Confidence 77765433 456666677777777664311 0111234455556666554
Q ss_pred ee-eeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccC
Q 038612 333 QL-IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLP 411 (678)
Q Consensus 333 ~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 411 (678)
+- ...+|..+..+.+|..+|+|.|.+. .+|+.+.++++|+.|+|++|+|+ .+........+|++|++|.|+++ .+|
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cch
Confidence 32 2345666666677777777777666 56666666777777777777666 23333344456666666666666 566
Q ss_pred cccccccccceEEEcCCCccc-ccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCC
Q 038612 412 QQILEIRTLSFQLDLSNNLLS-GYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISL 490 (678)
Q Consensus 412 ~~~~~~~~l~~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 490 (678)
..+..++.+ +.|.+.+|.++ .-+|..++.+.+|+.+..++|.+. .+|+.+..|..|+.|.|++|++. .+|+++.-+
T Consensus 285 ~avcKL~kL-~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 285 DAVCKLTKL-TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred HHHhhhHHH-HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence 666655555 45555555544 235555666666666666666665 56666666666666666666654 456666666
Q ss_pred CCCCEEECCCCccc
Q 038612 491 KSLKVLDLSRNNLS 504 (678)
Q Consensus 491 ~~L~~L~ls~n~l~ 504 (678)
+.|+.||+..|.-.
T Consensus 362 ~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNL 375 (1255)
T ss_pred CCcceeeccCCcCc
Confidence 66666666666544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-34 Score=302.36 Aligned_cols=439 Identities=28% Similarity=0.354 Sum_probs=223.6
Q ss_pred EEEEEcCCCCCCCc-ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccc
Q 038612 78 VTELYLRNQSLGAD-IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEEN 156 (678)
Q Consensus 78 v~~l~l~~~~l~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 156 (678)
+..||++++.+... ..+..+.+|+.|+++.|.+. ..|.+..++++|++|.|.+|.+. .+|..+..+++|++|++++|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchh
Confidence 44555555544432 22334445555555555554 33444555555555555555444 44555555555555555555
Q ss_pred cccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccC
Q 038612 157 NFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVS 236 (678)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 236 (678)
.+. .+|..+..++.++.++.++|.....++ -..++.+++..|.+.+.++..+..+++ .|+|.+|.+. .
T Consensus 125 ~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~ 192 (1081)
T KOG0618|consen 125 HFG-PIPLVIEVLTAEEELAASNNEKIQRLG------QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---V 192 (1081)
T ss_pred ccC-CCchhHHhhhHHHHHhhhcchhhhhhc------cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---h
Confidence 554 445455555555555555441111111 112556666666666666666665555 5677777665 2
Q ss_pred CCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCc
Q 038612 237 IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPL 316 (678)
Q Consensus 237 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 316 (678)
..+..+.+|+.+....|.+..... .-++|+.|+...|.+....+. ..+.+|++++++.|+++ .+|.
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~----------~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~ 258 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEI----------SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPE 258 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEe----------cCcchheeeeccCcceeeccc---cccccceeeecchhhhh-cchH
Confidence 334556666666666665544321 124566666666665522222 22345777777777776 3456
Q ss_pred cCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcC-C
Q 038612 317 GIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQ-N 395 (678)
Q Consensus 317 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~ 395 (678)
++..+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+. .+|.....++.|++|+|..|++....+..+.... +
T Consensus 259 wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 7777777777777777763 45555566667777777777766 4555566677777777777766632222222221 1
Q ss_pred CceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECc
Q 038612 396 LMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQ 475 (678)
Q Consensus 396 L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 475 (678)
|..|+.+.|++. ..|..-.+....++.|.+.+|.++...-+.+.++.+|+.|+|++|++.......+.+++.|++|+||
T Consensus 337 l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 337 LNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 444444444443 2221111111111445555555554444445555555555555555542222334455555555555
Q ss_pred CCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceee-CCCCCccCCCCceeccCCCC
Q 038612 476 GNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQ-VPAKGVFHNKTSISLVGNEN 550 (678)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~~~l~~~~~~~n~~ 550 (678)
+|+++ .+|+.+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|.....++++.+++.||.+
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 55554 33455555555555555555555 334 344455555555555555422 22221124455555555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.1e-33 Score=280.14 Aligned_cols=369 Identities=28% Similarity=0.373 Sum_probs=232.0
Q ss_pred ccCcEEeccCCCCc-cCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEE
Q 038612 122 SALQAFDVGENTLH-GRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSL 200 (678)
Q Consensus 122 ~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 200 (678)
+-.+-.|+++|.++ +.+|.....++.++.|.|.+..+. .+|+.++.|.+|++|.+++|++. .+-..+. .++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhHHH
Confidence 34445555555555 345555555555555555555554 45555555555555555555544 1222222 44555555
Q ss_pred EcccCcCC-CCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEE
Q 038612 201 IVAQNNLT-GPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLE 279 (678)
Q Consensus 201 ~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 279 (678)
+++.|++. .-+|..+-++..|..|||++|++. ..|. .+..-.++-+|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~------------------------------~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT------------------------------NLEYAKNSIVLN 132 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcch------------------------------hhhhhcCcEEEE
Confidence 55555442 123444444455555555555443 2222 344445556666
Q ss_pred cccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccc
Q 038612 280 LRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLE 359 (678)
Q Consensus 280 L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 359 (678)
|++|+|.......+.++.. |-.|||++|++. .+|+.+..+.+|+.|.|++|.+...--..+..+.+|+.|.+++.+-+
T Consensus 133 LS~N~IetIPn~lfinLtD-LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTD-LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred cccCccccCCchHHHhhHh-Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 6666665333333444444 667777777776 56666777777888888877654332233445667777777776432
Q ss_pred -ccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCcc
Q 038612 360 -GNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFR 438 (678)
Q Consensus 360 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~ 438 (678)
..+|.++..+.+|..+|++.|.+. .+|..+.++++|+.|+||+|+++ ++.-.......+ +.|++|.|+++ .+|..
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchHH
Confidence 356777777888888888888777 67777778888888888888776 444444444444 67788888877 67777
Q ss_pred ccCcccCCeeecccCcccc-cCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCC
Q 038612 439 VGNLKNLARLDISMNHFFG-EIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFL 517 (678)
Q Consensus 439 ~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 517 (678)
+..+++|+.|.+.+|+++- -+|..++.+.+|+.+..++|.+. ..|+.+..++.|+.|.|++|++. .+|+.+.-++.|
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 7788888888888877642 36777788888888887777764 67777777888888888888877 677777778888
Q ss_pred CEEeCCcCcceeeCC
Q 038612 518 QYLDLSYNHFEGQVP 532 (678)
Q Consensus 518 ~~L~l~~n~l~~~~p 532 (678)
+.||++.|+-....|
T Consensus 365 ~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 365 KVLDLRENPNLVMPP 379 (1255)
T ss_pred ceeeccCCcCccCCC
Confidence 888888777655554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-32 Score=285.89 Aligned_cols=438 Identities=26% Similarity=0.344 Sum_probs=351.1
Q ss_pred EEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccc
Q 038612 78 VTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE 155 (678)
Q Consensus 78 v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 155 (678)
+..++++.|.+-.. ....+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 55666666544332 22233445999999998886 67888889999999999999888 6778888999999999998
Q ss_pred ccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceecc
Q 038612 156 NNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKV 235 (678)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 235 (678)
|.++ .+|..+..+.+|++|+++.|.+. .+|.-+. .+..++.+..++|.... .++... ++.+++..|.+.+.+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccch
Confidence 8887 88999999999999999999987 7787776 78888888888883222 233332 888889889888888
Q ss_pred CCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCC
Q 038612 236 SIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIP 315 (678)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (678)
+.....++. .|++..|.+... .+..+.+|+.+....|.+... ...-.+++.|+.+.|.+....+
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~~~---------dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEMEVL---------DLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLDV 236 (1081)
T ss_pred hcchhhhhe--eeecccchhhhh---------hhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeecc
Confidence 888888877 899999988722 467788899999888876521 1112248999999998884333
Q ss_pred ccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCC
Q 038612 316 LGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQN 395 (678)
Q Consensus 316 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 395 (678)
. ..-.+|+.++++.|++.+. |++++.+.+|+.++..+|.+. .+|..+....+|+.|.+..|.+. -+|......++
T Consensus 237 ~--p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~s 311 (1081)
T KOG0618|consen 237 H--PVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKS 311 (1081)
T ss_pred c--cccccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccce
Confidence 2 2346899999999999854 599999999999999999996 67888888999999999999998 46667778999
Q ss_pred CceEecCCCccccccCccccccccc-ceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEEC
Q 038612 396 LMELIVSHNKLNGTLPQQILEIRTL-SFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYM 474 (678)
Q Consensus 396 L~~L~l~~n~l~~~~p~~~~~~~~l-~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 474 (678)
|++|+|..|++. .+|+.+...... +..++.+.|.+.......=..++.|+.|++.+|.+++..-+.+.+...|+.|+|
T Consensus 312 L~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 999999999998 777765544332 356777777777544333345678999999999999988888999999999999
Q ss_pred cCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCC
Q 038612 475 QGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNE 549 (678)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~ 549 (678)
++|++.......+.++..|+.|+||+|+++ .+|+.+..++.|++|...+|++. ..|.....+.++.+++.-|.
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 999998666678899999999999999999 77899999999999999999998 67777778888888888764
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.3e-23 Score=246.82 Aligned_cols=338 Identities=18% Similarity=0.239 Sum_probs=199.6
Q ss_pred cCCCCCCCCEEECCCCC------CccccChhhcCCc-cCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCccc
Q 038612 93 GYSSWSKLEKLSIAVNH------LRGQLPASIGNLS-ALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVS 165 (678)
Q Consensus 93 ~~~~l~~L~~L~Ls~n~------~~~~~~~~l~~l~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 165 (678)
.|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..| ...+|++|++.+|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 45667777777765442 2234555555553 5777777776665 556555 3567777777777665 45666
Q ss_pred ccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCC
Q 038612 166 IYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDL 245 (678)
Q Consensus 166 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 245 (678)
+..+++|++|+++++.....+|. +. .+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 66677777777776654445553 33 56667777776665545566666666667777666654444444333 44555
Q ss_pred CeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcccc
Q 038612 246 AWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLN 325 (678)
Q Consensus 246 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 325 (678)
+.|++++| .....+|.. +.+|+.|++++|.+. .+|..+ .+++|+
T Consensus 707 ~~L~Lsgc------------------------------~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~ 750 (1153)
T PLN03210 707 YRLNLSGC------------------------------SRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLD 750 (1153)
T ss_pred CEEeCCCC------------------------------CCccccccc----cCCcCeeecCCCccc-cccccc-cccccc
Confidence 55555444 332222221 223555555555544 333332 345555
Q ss_pred cccccccee-------eeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCce
Q 038612 326 LFSLHLNQL-------IGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLME 398 (678)
Q Consensus 326 ~L~l~~n~~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 398 (678)
.|.+.++.. ....+..+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... ++++|+.
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 555544221 11111122335678888888887666777778888888888888776555666655 5778888
Q ss_pred EecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCc
Q 038612 399 LIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNS 478 (678)
Q Consensus 399 L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 478 (678)
|++++|.....+|... ..+ +.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 830 L~Ls~c~~L~~~p~~~---~nL-~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 830 LDLSGCSRLRTFPDIS---TNI-SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EECCCCCccccccccc---ccc-CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8888876544454432 223 56677777766 356666677777777777654433566666666777777777664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.8e-23 Score=245.82 Aligned_cols=340 Identities=22% Similarity=0.239 Sum_probs=209.3
Q ss_pred CccCCCCCCCCEEEccccc------ccccCcccccCCC-CCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCC
Q 038612 139 PESLGQLRSLKFLNVEENN------FSGMVPVSIYNIS-SLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPI 211 (678)
Q Consensus 139 p~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~ 211 (678)
+.+|.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-cc
Confidence 3456677777777775543 2234566666653 5777777777765 566655 4577777777777776 45
Q ss_pred CccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccCh
Q 038612 212 PHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPH 291 (678)
Q Consensus 212 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~ 291 (678)
+..+..+++|+.|+++++...+.+| .+..+++|+.|++.+|..... ++..+..+++|+.|++++|.....+|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~------lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVE------LPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccc------cchhhhccCCCCEEeCCCCCCcCccCC
Confidence 6667777777777777765444454 366677777777776643221 233566677777777777655455565
Q ss_pred hHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccc-------ccCCc
Q 038612 292 FIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLE-------GNIPS 364 (678)
Q Consensus 292 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~ 364 (678)
.+ .+. +|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|++.++... ...+.
T Consensus 700 ~i-~l~-sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 700 GI-NLK-SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cC-CCC-CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh
Confidence 44 333 3777777777654444432 346677777777654 344433 4666777776654321 11111
Q ss_pred cccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCccc
Q 038612 365 SLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKN 444 (678)
Q Consensus 365 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~ 444 (678)
.....++|+.|++++|...+.+|.++.++++|+.|++++|...+.+|..+ +++.+ +.|++++|.....+|.. ..+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL-~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL-ESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc-CEEECCCCCcccccccc---ccc
Confidence 12234567777777776666677777777777777777765544666554 45555 66777766544444432 246
Q ss_pred CCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCc
Q 038612 445 LARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNN 502 (678)
Q Consensus 445 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 502 (678)
|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 667777777665 566666667777777777655444556566666677777776664
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=8.7e-26 Score=215.77 Aligned_cols=278 Identities=19% Similarity=0.230 Sum_probs=171.0
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccc-ccccccCcccccCCCCCcEEE
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE-NNFSGMVPVSIYNISSLEMIF 176 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 176 (678)
+.-..++|..|.|+...+.+|+.+++||.||||+|.|+.+.|.+|.++..|..|-+.+ |+|+...-..|.+|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3467788888999888888899999999999999999888888999998887776666 888866667788889999988
Q ss_pred CCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCccee------------ccCCCCCCCCC
Q 038612 177 LPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTG------------KVSIDFNGLSD 244 (678)
Q Consensus 177 l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~ 244 (678)
+.-|++. .++.+.+..+++|..|.+.+|.+..+....|..+..++.+.+..|.+.. ..+..++....
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 8888887 5555555688888888888888875444478888888888888877431 12222233322
Q ss_pred CCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChh-HhhccccCcEEEccCcceeccCCccCcCCcc
Q 038612 245 LAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHF-IANLSKTMTIIDMGENKLSGTIPLGIGNLVN 323 (678)
Q Consensus 245 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 323 (678)
..-..+.+.++.......+ .. ....+..=-.+.+...+..|.. |..++. |+.|+|++|+++++-+.+|.....
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf--~c---~~esl~s~~~~~d~~d~~cP~~cf~~L~~-L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKF--LC---SLESLPSRLSSEDFPDSICPAKCFKKLPN-LRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cchHHHHHHHhcccchhhh--hh---hHHhHHHhhccccCcCCcChHHHHhhccc-ceEeccCCCccchhhhhhhcchhh
Confidence 2222233333222221100 00 0001110011111222233322 333333 666666666666555555666666
Q ss_pred ccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCcc
Q 038612 324 LNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNL 382 (678)
Q Consensus 324 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 382 (678)
++.|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666666655544444555566666666666666555555555555666666555443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.6e-25 Score=213.87 Aligned_cols=284 Identities=19% Similarity=0.186 Sum_probs=222.9
Q ss_pred cCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCC-CCCCccCChhhhcCCCCCCEEE
Q 038612 123 ALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPA-NRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 123 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
.-..++|..|.|+..-|.+|..+++|+.|||++|+|+.+.|.+|.++..|..|-+.+ |+|+ .+|.+.+.++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 456789999999988888999999999999999999999999999999998887766 8888 78988888999999999
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCc------ccccccCCCCCC
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDL------DFVFSLTNCSKL 275 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~~~l~~~~~L 275 (678)
+.-|++.....+.|..+++|..|.+.+|.+.......|..+..++.+.+..|.+.....-.+ ..+..++.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 99999998888899999999999999999987777789999999999999887543321000 011123333333
Q ss_pred cEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCC-ccCcCCccccccccccceeeeccCcccCCCcccceeecc
Q 038612 276 EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIP-LGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLY 354 (678)
Q Consensus 276 ~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 354 (678)
.-..+.+.++...-+..+......+..--.+.+...+..| ..|..+++|++|++++|+++++-+.+|.+...+++|+|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 3334444444333333332221112111122333333333 358899999999999999999999999999999999999
Q ss_pred CccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccc
Q 038612 355 GNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLN 407 (678)
Q Consensus 355 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 407 (678)
.|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99998766678899999999999999999999999999999999999888764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.3e-20 Score=201.38 Aligned_cols=265 Identities=28% Similarity=0.355 Sum_probs=138.4
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEE
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
..-..|+++++.++ .+|..+. .+|+.|++++|+++ .+|. ..++|++|++++|+++ .+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 34556666666666 4565554 35666666666666 3443 2356666666666666 3443 234566666
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcc
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELR 281 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 281 (678)
+++|.++. +|.. .++|+.|++++|+++.. |. ..++|+.|++++|.+..... ...+|+.|+++
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----------lp~~L~~L~Ls 330 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAY 330 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----------Ccccccccccc
Confidence 66666552 3321 23455666666655532 21 12345555555554443211 01124444444
Q ss_pred cCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccccc
Q 038612 282 KNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGN 361 (678)
Q Consensus 282 ~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 361 (678)
+|.++ .+|. ++ .+|+.|++++|++.+ +|.. .++|+.|++++|.+..
T Consensus 331 ~N~L~-~LP~----lp------------------------~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~- 376 (788)
T PRK15387 331 NNQLT-SLPT----LP------------------------SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS- 376 (788)
T ss_pred cCccc-cccc----cc------------------------cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-
Confidence 44443 1222 12 234444444444442 2221 2345555555555552
Q ss_pred CCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccC
Q 038612 362 IPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGN 441 (678)
Q Consensus 362 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~ 441 (678)
+|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|++. .+|.... .+ ..|++++|+++ .+|..+..
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~~---~L-~~L~Ls~NqLt-~LP~sl~~ 443 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLPS---GL-LSLSVYRNQLT-RLPESLIH 443 (788)
T ss_pred Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcchh---hh-hhhhhccCccc-ccChHHhh
Confidence 3332 2356666666666653 3332 245666677776665 3554322 22 45677777776 45666777
Q ss_pred cccCCeeecccCcccccCCccc
Q 038612 442 LKNLARLDISMNHFFGEIPATL 463 (678)
Q Consensus 442 l~~L~~L~Ls~n~~~~~~~~~~ 463 (678)
+++|+.|+|++|++++..+..+
T Consensus 444 L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 444 LSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCeEECCCCCCCchHHHHH
Confidence 7777788888887777666555
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.8e-20 Score=200.98 Aligned_cols=266 Identities=29% Similarity=0.358 Sum_probs=178.9
Q ss_pred CCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEec
Q 038612 147 SLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNL 226 (678)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 226 (678)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++. +|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 3456666666666 4555543 35666666666666 3443 23566666666666653 3321 245555555
Q ss_pred cCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEcc
Q 038612 227 GQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMG 306 (678)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~ 306 (678)
++|.++.. |.. ..+|+.|++++|.+. .+|. .+++|+.|+++
T Consensus 270 s~N~L~~L-p~l---------------------------------p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS 310 (788)
T PRK15387 270 FSNPLTHL-PAL---------------------------------PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVS 310 (788)
T ss_pred cCCchhhh-hhc---------------------------------hhhcCEEECcCCccc-cccc----cccccceeECC
Confidence 55554421 110 134556666666655 3333 12347777887
Q ss_pred CcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccC
Q 038612 307 ENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNI 386 (678)
Q Consensus 307 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 386 (678)
+|++.+ +|.. ...|+.|++++|++.+ +|. -..+|++|++++|++++ +|.. .++|+.|++++|.+.. +
T Consensus 311 ~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 311 DNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L 377 (788)
T ss_pred CCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence 777774 3332 2357778888888864 443 12589999999999985 5543 3578899999999984 5
Q ss_pred CCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCC
Q 038612 387 PSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSAC 466 (678)
Q Consensus 387 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l 466 (678)
|.. ..+|+.|++++|++. .+|... ..+ +.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..+
T Consensus 378 P~l---~~~L~~LdLs~N~Lt-~LP~l~---s~L-~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L 444 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLT-SLPVLP---SEL-KELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHL 444 (788)
T ss_pred ccc---ccccceEEecCCccc-CCCCcc---cCC-CEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhc
Confidence 643 357999999999998 466543 344 789999999986 5543 357889999999998 789999999
Q ss_pred CCCCEEECcCCccccccCccccC
Q 038612 467 TSLEYLYMQGNSFGGRIPLSLIS 489 (678)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~ 489 (678)
++|+.|+|++|++++..+..+..
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cCCCeEECCCCCCCchHHHHHHH
Confidence 99999999999999887776633
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=3.2e-19 Score=196.05 Aligned_cols=335 Identities=19% Similarity=0.296 Sum_probs=153.6
Q ss_pred CCCCHHhHHHHHHHHhcCCCCCC---CCCCCCCCCCCCCccc----------------ccccCCCCcEEEEEcCCCCCCC
Q 038612 30 VHTNETDRLALLAIKSQFHDPLE---VTSSWDTSVNLCQWTG----------------VTCGRRHQRVTELYLRNQSLGA 90 (678)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~w~~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~l~~ 90 (678)
..+..+|...+++.++.+..|.- .-..|++.+++|.-+. |.|. ...|+.+.+.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccccccc
Confidence 34566788889998888875541 2335998899997655 4464 3566666655532211
Q ss_pred cccCCCCCCC-CEEEC----CCCCCcccc---Chhh-----cCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccccc
Q 038612 91 DIGYSSWSKL-EKLSI----AVNHLRGQL---PASI-----GNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENN 157 (678)
Q Consensus 91 ~~~~~~l~~L-~~L~L----s~n~~~~~~---~~~l-----~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 157 (678)
... .-..- .+... ..+...+.. -..+ +-..+...|+++++.++ .+|..+. ++|+.|+|++|.
T Consensus 136 ~~~--~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~ 210 (754)
T PRK15370 136 SAS--GSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNE 210 (754)
T ss_pred cCC--CCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCC
Confidence 100 00000 00000 000000000 0000 01123344444444444 2333332 244444444444
Q ss_pred ccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCC
Q 038612 158 FSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSI 237 (678)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 237 (678)
++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|++.. +|.
T Consensus 211 Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~ 279 (754)
T PRK15370 211 LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE 279 (754)
T ss_pred CC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc
Confidence 44 2333222 24444444444444 3343322 24444445444444 2333322 244445555444442 232
Q ss_pred CCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCcc
Q 038612 238 DFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLG 317 (678)
Q Consensus 238 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~ 317 (678)
.+. ++|+.|++++|.+..... .+ .++|+.|++++|.+.. +|..+ +.+|+.|++++|.+++ +|..
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt~LP~-------~l--p~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIRTLPA-------HL--PSGITHLNVQSNSLTA-LPETL---PPGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred ccC--CCCcEEECCCCccccCcc-------cc--hhhHHHHHhcCCcccc-CCccc---cccceeccccCCcccc-CChh
Confidence 221 244555555554443211 01 1245555555555542 33222 1236666666665553 3433
Q ss_pred CcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCC----CCc
Q 038612 318 IGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSL----GSC 393 (678)
Q Consensus 318 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l 393 (678)
+. ++|+.|++++|++. .+|..+ .++|++|++++|.++ .+|..+. ..|+.|++++|++. .+|..+ ..+
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 32 45666666666655 234333 246667777777666 3444333 35666777777666 334332 234
Q ss_pred CCCceEecCCCccc
Q 038612 394 QNLMELIVSHNKLN 407 (678)
Q Consensus 394 ~~L~~L~l~~n~l~ 407 (678)
+++..|++.+|++.
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 66677777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.1e-18 Score=191.89 Aligned_cols=247 Identities=25% Similarity=0.366 Sum_probs=142.3
Q ss_pred CCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEe
Q 038612 146 RSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELN 225 (678)
Q Consensus 146 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 225 (678)
.+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 46789999999998 5676553 58999999999999 6787765 58999999999998 4565553 4789999
Q ss_pred ccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEc
Q 038612 226 LGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDM 305 (678)
Q Consensus 226 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L 305 (678)
+++|++. .+|..+. .+|+.|++++|.+... |..+ +.+|+.|++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-------------------------------P~~l---~~sL~~L~L 290 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISCL-------------------------------PENL---PEELRYLSV 290 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCcc-------------------------------cccc---CCCCcEEEC
Confidence 9999887 3444332 3455555555555432 2211 112444444
Q ss_pred cCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCcc
Q 038612 306 GENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGN 385 (678)
Q Consensus 306 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 385 (678)
++|++++ +|..+. ++|+.|++++|++.. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .
T Consensus 291 s~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~ 360 (754)
T PRK15370 291 YDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-V 360 (754)
T ss_pred CCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-c
Confidence 4444442 222221 245555555555542 23222 2456666666666553 443332 45666666666655 3
Q ss_pred CCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCc----cccCcccCCeeecccCccc
Q 038612 386 IPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPF----RVGNLKNLARLDISMNHFF 456 (678)
Q Consensus 386 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~~~ 456 (678)
+|..+ .++|+.|++++|++. .+|..+.. .+ +.|++++|++.. +|. ....++++..|++.+|.++
T Consensus 361 LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~~--sL-~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 361 LPETL--PPTITTLDVSRNALT-NLPENLPA--AL-QIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CChhh--cCCcCEEECCCCcCC-CCCHhHHH--HH-HHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 44433 245666666666665 34443321 12 445555555542 222 2223355566666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.6e-19 Score=183.47 Aligned_cols=129 Identities=23% Similarity=0.215 Sum_probs=68.7
Q ss_pred EECCCCCCc-cccChhhcCCccCcEEeccCCCCcc----CCCccCCCCCCCCEEEcccccccc------cCcccccCCCC
Q 038612 103 LSIAVNHLR-GQLPASIGNLSALQAFDVGENTLHG----RIPESLGQLRSLKFLNVEENNFSG------MVPVSIYNISS 171 (678)
Q Consensus 103 L~Ls~n~~~-~~~~~~l~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~ 171 (678)
|+|..+.+. ......+..+..|++|+++++.++. .++..+...++|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 2333445555666666666666532 233445555666677766665541 22344556667
Q ss_pred CcEEECCCCCCCccCChhhhcCCC---CCCEEEcccCcCCC----CCCccCcCC-CCCcEEeccCCcce
Q 038612 172 LEMIFLPANRLEGILPLNIGFNLP---NLKSLIVAQNNLTG----PIPHSLSNA-SNLIELNLGQNHFT 232 (678)
Q Consensus 172 L~~L~l~~n~~~~~~p~~~~~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~ 232 (678)
|++|++++|.+.+..+..+. .+. +|++|++++|++++ .+...+..+ ++|+.|++++|.++
T Consensus 83 L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred eeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 77777776666544443333 222 36666666666552 112233344 55666666666554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.8e-19 Score=183.28 Aligned_cols=228 Identities=20% Similarity=0.265 Sum_probs=138.2
Q ss_pred EEcCCCCCCCc---ccCCCCCCCCEEECCCCCCccc----cChhhcCCccCcEEeccCCCCcc------CCCccCCCCCC
Q 038612 81 LYLRNQSLGAD---IGYSSWSKLEKLSIAVNHLRGQ----LPASIGNLSALQAFDVGENTLHG------RIPESLGQLRS 147 (678)
Q Consensus 81 l~l~~~~l~~~---~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~------~~p~~~~~l~~ 147 (678)
|+|..+.+++. ..+..++.|+.|+++++.+++. ++..+...+.|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 44555555432 2234455688888888777432 45556677778888888776652 23345667778
Q ss_pred CCEEEcccccccccCcccccCCCC---CcEEECCCCCCCcc----CChhhhcCC-CCCCEEEcccCcCCCC----CCccC
Q 038612 148 LKFLNVEENNFSGMVPVSIYNISS---LEMIFLPANRLEGI----LPLNIGFNL-PNLKSLIVAQNNLTGP----IPHSL 215 (678)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~l~~n~~~~~----~p~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l 215 (678)
|++|++++|.+....+..+..+.+ |++|++++|.+.+. +...+. .+ ++|++|++++|.+++. ++..+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 888888888877555555555544 88888888877632 222333 45 7888888888887732 33345
Q ss_pred cCCCCCcEEeccCCcceec----cCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccCh
Q 038612 216 SNASNLIELNLGQNHFTGK----VSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPH 291 (678)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~ 291 (678)
..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+...... .+...+..+++|++|++++|.+++....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS--ALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH--HHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 6677888888888877642 222334456777777777766533221 1223455667777777777776653333
Q ss_pred hHhhc----cccCcEEEccCccee
Q 038612 292 FIANL----SKTMTIIDMGENKLS 311 (678)
Q Consensus 292 ~~~~~----~~~L~~L~L~~n~l~ 311 (678)
.+... ...|+.|++++|.++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCC
Confidence 33222 123666666665554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.7e-18 Score=147.10 Aligned_cols=162 Identities=25% Similarity=0.438 Sum_probs=114.5
Q ss_pred ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCC
Q 038612 92 IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISS 171 (678)
Q Consensus 92 ~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 171 (678)
+++..+.+++.|.||+|.++ .+|..+..+.+|++|++++|+++ .+|.+++++++|+.|+++-|++. ..|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 34556666777777777776 55667777777777777777777 66777777777777777777776 67777777777
Q ss_pred CcEEECCCCCCC-ccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEc
Q 038612 172 LEMIFLPANRLE-GILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSF 250 (678)
Q Consensus 172 L~~L~l~~n~~~-~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 250 (678)
|+.||+++|.+. ..+|..++ .+..|+.|++++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+
T Consensus 104 levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 777777777764 34566666 6777777777777776 56777777777777777777665 34555666666666666
Q ss_pred ccCcccccC
Q 038612 251 EANNLGAEA 259 (678)
Q Consensus 251 ~~n~l~~~~ 259 (678)
.+|.++..+
T Consensus 181 qgnrl~vlp 189 (264)
T KOG0617|consen 181 QGNRLTVLP 189 (264)
T ss_pred ccceeeecC
Confidence 666665543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=8.3e-18 Score=142.94 Aligned_cols=162 Identities=30% Similarity=0.453 Sum_probs=95.6
Q ss_pred CCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceE
Q 038612 320 NLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMEL 399 (678)
Q Consensus 320 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 399 (678)
++.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|++.-|++. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444455555555554 23334445555555555555554 34444555555555555555444 445555555555555
Q ss_pred ecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCcc
Q 038612 400 IVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSF 479 (678)
Q Consensus 400 ~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 479 (678)
|+.+|++.. ..+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+
T Consensus 108 dltynnl~e------------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 108 DLTYNNLNE------------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hcccccccc------------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 555554431 134555666677777888888776 6777777777787777777776
Q ss_pred ccccCccccCCCCCCEEECCCCcccccCCccC
Q 038612 480 GGRIPLSLISLKSLKVLDLSRNNLSGKIPEYL 511 (678)
Q Consensus 480 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 511 (678)
. ..|..++.++.|+.|++.+|+++ .+|..+
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 5 56667777777777777777777 344333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=1.8e-14 Score=158.41 Aligned_cols=157 Identities=30% Similarity=0.514 Sum_probs=126.2
Q ss_pred CCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCC-----CcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEE
Q 038612 30 VHTNETDRLALLAIKSQFHDPLEVTSSWDTSVNLC-----QWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLS 104 (678)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~ 104 (678)
..+.++|..||+.+|+++.++.. .+|.+ ++| .|.||.|...... ....++.|+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~------------------~~~~v~~L~ 424 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTK------------------GKWFIDGLG 424 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCC------------------CceEEEEEE
Confidence 35677899999999999976542 47853 344 7999999521100 011356778
Q ss_pred CCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCc
Q 038612 105 IAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG 184 (678)
Q Consensus 105 Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 184 (678)
|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+++
T Consensus 425 L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhcCCCCCCEEEcccCcCC
Q 038612 185 ILPLNIGFNLPNLKSLIVAQNNLT 208 (678)
Q Consensus 185 ~~p~~~~~~l~~L~~L~l~~n~l~ 208 (678)
.+|..+.....++..+++.+|...
T Consensus 505 ~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 505 RVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCChHHhhccccCceEEecCCccc
Confidence 999888744456777877777543
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.9e-13 Score=150.44 Aligned_cols=118 Identities=37% Similarity=0.549 Sum_probs=101.5
Q ss_pred cCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCC
Q 038612 444 NLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLS 523 (678)
Q Consensus 444 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 523 (678)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeCCCCC--ccCCCCceeccCCCCCcccCCCCCCCCCC
Q 038612 524 YNHFEGQVPAKG--VFHNKTSISLVGNENLCGGLDELHLPSCP 564 (678)
Q Consensus 524 ~n~l~~~~p~~~--~~~~l~~~~~~~n~~lc~~~~~~~~~~c~ 564 (678)
+|++.|.+|..- ...++..+++.+|+.+|+.+ .++.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p---~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP---GLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC---CCCCCc
Confidence 999999998642 23455678899999999853 235564
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=5.9e-13 Score=134.35 Aligned_cols=192 Identities=29% Similarity=0.423 Sum_probs=141.9
Q ss_pred CcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccC
Q 038612 300 MTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDF 379 (678)
Q Consensus 300 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 379 (678)
-...|++.|++. ++|..+..+-.|+.+.+..|.+. .+|+.+.++..|++|||+.|++. ..|..++.|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 445778888887 77878888888888888888776 56777888888888888888887 5666677766 78888888
Q ss_pred CccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccC
Q 038612 380 NNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEI 459 (678)
Q Consensus 380 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 459 (678)
|+++ .+|..++..+.|..||.+.|.+. .+|..+..+.++ ..|.+..|++.. +|..+..+ .|..||+|.|++. .+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ec
Confidence 8887 67777887888888888888887 677777777777 667777777774 44444433 4777888888776 67
Q ss_pred CccccCCCCCCEEECcCCccccccCccc---cCCCCCCEEECCCCc
Q 038612 460 PATLSACTSLEYLYMQGNSFGGRIPLSL---ISLKSLKVLDLSRNN 502 (678)
Q Consensus 460 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ls~n~ 502 (678)
|-.|.+++.|++|-|.+|.+. ..|..+ +...-.++|+...|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 777778888888888888776 333333 233445677777774
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=2.2e-11 Score=136.83 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=106.4
Q ss_pred CcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCC--CccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEc
Q 038612 76 QRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNH--LRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNV 153 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 153 (678)
..++++.+-++.+.....-..++.|+.|-+..|. +.....+.|..++.|++|||++|.--+.+|..++.+-+||+|+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4566666666666555555666788888888875 55445556788899999999988766788888999999999999
Q ss_pred ccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCC--CCCCccCcCCCCCcEEecc
Q 038612 154 EENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLT--GPIPHSLSNASNLIELNLG 227 (678)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~ 227 (678)
+++.+. .+|..+.++..|.+|++..+.....+|.... .+++|++|.+...... ...-..+.++.+|+.+...
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~-~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILL-ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhh-hcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 998888 7888899999999999888775544443333 6888888888765422 2222234445555555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.1e-12 Score=132.45 Aligned_cols=195 Identities=31% Similarity=0.483 Sum_probs=158.3
Q ss_pred CccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEe
Q 038612 321 LVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELI 400 (678)
Q Consensus 321 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 400 (678)
+..-...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++||++.|+++ .+|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444567788888887 67777888889999999999887 68888999999999999999998 6777777766 89999
Q ss_pred cCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccc
Q 038612 401 VSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFG 480 (678)
Q Consensus 401 l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 480 (678)
+++|++. .+|..+.-...+ ..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||+++|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl-~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTL-AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhH-HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 9999988 788888866666 67899999887 56677888899999999999887 667777755 4889999999987
Q ss_pred cccCccccCCCCCCEEECCCCcccccCCccC---CCCCCCCEEeCCcCc
Q 038612 481 GRIPLSLISLKSLKVLDLSRNNLSGKIPEYL---ENLPFLQYLDLSYNH 526 (678)
Q Consensus 481 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l---~~l~~L~~L~l~~n~ 526 (678)
.+|..|..++.|++|-|.+|.+. ..|..+ +...-.++|+..-|+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78889999999999999999998 444433 334556788888885
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1.3e-10 Score=122.50 Aligned_cols=199 Identities=29% Similarity=0.451 Sum_probs=122.8
Q ss_pred EEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCC-CCCEEEcccccccccCcccccCCCCCcEEECCCC
Q 038612 102 KLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLR-SLKFLNVEENNFSGMVPVSIYNISSLEMIFLPAN 180 (678)
Q Consensus 102 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 180 (678)
.++++.+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666655322 223445566777777777776 4555555553 7777777777776 45556677777777777777
Q ss_pred CCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCC
Q 038612 181 RLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEAS 260 (678)
Q Consensus 181 ~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 260 (678)
++. .+|.... ..++|+.|++++|++. .+|........|++|.+++|+.. ..+..+..+.++..+.+..|.+...
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-- 247 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-- 247 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec--
Confidence 776 4555443 5667777777777776 45554455556777777777532 2344456666666666666665442
Q ss_pred CCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCcc
Q 038612 261 NDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLG 317 (678)
Q Consensus 261 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~ 317 (678)
+..++.+++++.|++++|.+....+ ++.... ++.|++++|.+....+..
T Consensus 248 -----~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~-l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 248 -----PESIGNLSNLETLDLSNNQISSISS--LGSLTN-LRELDLSGNSLSNALPLI 296 (394)
T ss_pred -----cchhccccccceecccccccccccc--ccccCc-cCEEeccCccccccchhh
Confidence 2245666677777777777763333 444443 778888887777555543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=5.3e-11 Score=106.96 Aligned_cols=109 Identities=25% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCCCCCCEEECCCCCCccccChhhc-CCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccc-cCCCCC
Q 038612 95 SSWSKLEKLSIAVNHLRGQLPASIG-NLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSI-YNISSL 172 (678)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 172 (678)
.+..+++.|+|.+|.|... +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.|+.. ...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 3334455555555555422 1232 344555555555555422 1344455555555555555422 2222 234455
Q ss_pred cEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCC
Q 038612 173 EMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLT 208 (678)
Q Consensus 173 ~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 208 (678)
++|++++|++...-.-.....+++|++|++.+|+++
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555555554432211111113444444444444443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-11 Score=120.37 Aligned_cols=212 Identities=21% Similarity=0.221 Sum_probs=112.0
Q ss_pred cCCccCcEEeccCCCCccCCC--ccCCCCCCCCEEEcccccccccCc--ccccCCCCCcEEECCCCCCCccCChhhhcCC
Q 038612 119 GNLSALQAFDVGENTLHGRIP--ESLGQLRSLKFLNVEENNFSGMVP--VSIYNISSLEMIFLPANRLEGILPLNIGFNL 194 (678)
Q Consensus 119 ~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l 194 (678)
.++++|+...|.++... ..+ +....|++++.|||++|-+....| .-...+++|+.|+++.|.+...........+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35566666666655544 222 234456666666666665543222 2344566666666666665533333332345
Q ss_pred CCCCEEEcccCcCCCC-CCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCC
Q 038612 195 PNLKSLIVAQNNLTGP-IPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCS 273 (678)
Q Consensus 195 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 273 (678)
++|+.|.++.|.++.. +-.....+++|+.|+|..|............+..|++|+|++|++..... ....+.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-----~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-----GYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-----cccccccc
Confidence 6666666666666521 11223455666666666664333333334455566666666666554321 12455666
Q ss_pred CCcEEEcccCCCCcc-cChh----HhhccccCcEEEccCcceecc-CCccCcCCccccccccccceeee
Q 038612 274 KLEWLELRKNQFGGN-LPHF----IANLSKTMTIIDMGENKLSGT-IPLGIGNLVNLNLFSLHLNQLIG 336 (678)
Q Consensus 274 ~L~~L~L~~n~~~~~-~p~~----~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~ 336 (678)
.|+.|+++.+.+... .|+. ......+|+.|++..|++... .-..+..+++|+.|.+..|.+..
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 666666666665432 1111 112222477888887777421 11234556677777777776653
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2e-10 Score=121.18 Aligned_cols=201 Identities=33% Similarity=0.481 Sum_probs=139.2
Q ss_pred cEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCC-CCcEEECCCCCCCccCChhhhcCCCCCCEEEcc
Q 038612 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNIS-SLEMIFLPANRLEGILPLNIGFNLPNLKSLIVA 203 (678)
Q Consensus 125 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 203 (678)
..++++.+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 3577777776422 233555677888888888887 5566666664 8888888888887 5554555 78888888888
Q ss_pred cCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccC
Q 038612 204 QNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKN 283 (678)
Q Consensus 204 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 283 (678)
+|+++ .+|......+.|+.|++++|++.. +|........|+++.+++|.... .+..+..+.++..+.+.+|
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~-------~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIE-------LLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCccee-------cchhhhhcccccccccCCc
Confidence 88887 455555577888888888888763 34334455568888888885222 2234666777777777777
Q ss_pred CCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCccc
Q 038612 284 QFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVI 342 (678)
Q Consensus 284 ~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 342 (678)
.+. .++..++.++. ++.|++++|.++.... +..+.+++.|++++|.+....+...
T Consensus 243 ~~~-~~~~~~~~l~~-l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLE-DLPESIGNLSN-LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eee-eccchhccccc-cceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 765 33566666665 8888888888874433 7788888888888888776655443
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=4.5e-12 Score=120.94 Aligned_cols=91 Identities=24% Similarity=0.303 Sum_probs=59.3
Q ss_pred ccccCcccCCeeecccCccccc----CCccccCCCCCCEEECcCCccccccCccc-----cCCCCCCEEECCCCccccc-
Q 038612 437 FRVGNLKNLARLDISMNHFFGE----IPATLSACTSLEYLYMQGNSFGGRIPLSL-----ISLKSLKVLDLSRNNLSGK- 506 (678)
Q Consensus 437 ~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~~~- 506 (678)
..+..+++|+.|||..|-++.. +...+..+++|+.|++++|.+...-..++ ...|+|++|.+.+|.++..
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 3456677777777777776532 23345667778888888887764333222 2357888888888877642
Q ss_pred ---CCccCCCCCCCCEEeCCcCcc
Q 038612 507 ---IPEYLENLPFLQYLDLSYNHF 527 (678)
Q Consensus 507 ---~p~~l~~l~~L~~L~l~~n~l 527 (678)
+..++...+.|..|+|++|.+
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 223445577788888888877
No 33
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.07 E-value=9.2e-11 Score=119.92 Aligned_cols=61 Identities=52% Similarity=0.803 Sum_probs=52.6
Q ss_pred CCceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccCcccC
Q 038612 617 KFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 617 ~~~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
..+.|+|.|+.+||++|+++++||+||||.||||.+++| +.||||++...+.+..+||.+|
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~-~~vAVK~~~~~~~~~~~eF~~E 121 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG-TVVAVKRLSSNSGQGEREFLNE 121 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC-CEEEEEEecCCCCcchhHHHHH
Confidence 467799999999999999999999999999999999876 9999999976544315668765
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-11 Score=117.24 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCCCCCCEEECCCCCCccc----cChhhcCCccCcEEeccC
Q 038612 94 YSSWSKLEKLSIAVNHLRGQ----LPASIGNLSALQAFDVGE 131 (678)
Q Consensus 94 ~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~ls~ 131 (678)
+.....++.|+||+|.+... +...+.+.+.|+..++|+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 44556677777777766432 333345556666666664
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.5e-11 Score=117.38 Aligned_cols=212 Identities=22% Similarity=0.216 Sum_probs=91.4
Q ss_pred cCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCC--CCCccCcCCCCCcEEeccCCcceeccCCCCCCCCC
Q 038612 167 YNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTG--PIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSD 244 (678)
Q Consensus 167 ~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 244 (678)
.++.+|+...|.++.............+++++.|||++|-+.. .+..-...+++|+.|+++.|++........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----- 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-----
Confidence 3455666666666654421111223356666666666665542 111223455556666666555532111110
Q ss_pred CCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccc
Q 038612 245 LAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNL 324 (678)
Q Consensus 245 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 324 (678)
. ..+++|+.|.|+.|.++-..-.++....++|+.|+|..|.....-......++.|
T Consensus 193 -------------------~-----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 193 -------------------T-----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred -------------------h-----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 0 1233455555555554422222222222235555555443211222222334445
Q ss_pred cccccccceeeeccC-cccCCCcccceeeccCccccccC-Ccc-----ccCCCCCcEEeccCCccCcc-CCCCCCCcCCC
Q 038612 325 NLFSLHLNQLIGTIP-HVIGSLKNLQLLYLYGNSLEGNI-PSS-----LGNLTLLTKLALDFNNLQGN-IPSSLGSCQNL 396 (678)
Q Consensus 325 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 396 (678)
+.|+|++|++..... ...+.++.|+.|+++.+.+...- |+. ...+++|++|++..|++... .-..+..+++|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 555555554432210 22344555555555555544321 111 13455666666666655311 01122334455
Q ss_pred ceEecCCCccc
Q 038612 397 MELIVSHNKLN 407 (678)
Q Consensus 397 ~~L~l~~n~l~ 407 (678)
+.|.+..|.+.
T Consensus 329 k~l~~~~n~ln 339 (505)
T KOG3207|consen 329 KHLRITLNYLN 339 (505)
T ss_pred hhhhccccccc
Confidence 55555555544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3e-10 Score=102.11 Aligned_cols=111 Identities=25% Similarity=0.389 Sum_probs=39.2
Q ss_pred hcCCccCcEEeccCCCCccCCCccCC-CCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCC
Q 038612 118 IGNLSALQAFDVGENTLHGRIPESLG-QLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPN 196 (678)
Q Consensus 118 l~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~ 196 (678)
+.+..++++|+|++|.|+. + +.++ .+.+|++|+|++|.|+.. +.+..+++|++|++++|.++ .++..+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 4456678999999998873 3 3455 578899999999998843 25777889999999999888 444444335788
Q ss_pred CCEEEcccCcCCCCC-CccCcCCCCCcEEeccCCccee
Q 038612 197 LKSLIVAQNNLTGPI-PHSLSNASNLIELNLGQNHFTG 233 (678)
Q Consensus 197 L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 233 (678)
|++|++++|+|...- -..+..+++|+.|++.+|.++.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999999988886421 1346677888888888887763
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.5e-10 Score=108.03 Aligned_cols=128 Identities=28% Similarity=0.248 Sum_probs=59.7
Q ss_pred CCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEE
Q 038612 394 QNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLY 473 (678)
Q Consensus 394 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 473 (678)
..|+++|+++|.++ .+.....-.|.+ +.|++++|.+.... .+..+++|+.||||+|.++ .+...-..+.+.++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccce-eEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 45555666666554 333333333333 45555555554322 1444555555555555544 2222223444555555
Q ss_pred CcCCccccccCccccCCCCCCEEECCCCcccccC-CccCCCCCCCCEEeCCcCcce
Q 038612 474 MQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKI-PEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~ 528 (678)
|+.|.+.. -..++.+-+|..||+++|+|.... -..++++|-|+.+.+.+|++.
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55555431 122344445555555555554321 123445555555555555554
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.8e-09 Score=121.56 Aligned_cols=132 Identities=23% Similarity=0.316 Sum_probs=79.3
Q ss_pred CCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCC--CccCCCccCCCCCCCCEEEcccccccccCcccccCCCC
Q 038612 94 YSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENT--LHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISS 171 (678)
Q Consensus 94 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 171 (678)
..+....|+..+.+|.+. .++.+. .++.|+.|-+..|. +....+..|..++.|++|||++|.--+.+|..++++-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 334455666666666554 222222 33467677666664 33233334666777777777766555567777777777
Q ss_pred CcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCC
Q 038612 172 LEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQN 229 (678)
Q Consensus 172 L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 229 (678)
||+|++++..+. .+|..+. ++..|.+|++..+.-...+|.....+++|++|.+...
T Consensus 597 LryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 777777777766 6676666 6667777777666544444555555666666666544
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5.6e-10 Score=104.24 Aligned_cols=108 Identities=27% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCccccee
Q 038612 272 CSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLL 351 (678)
Q Consensus 272 ~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 351 (678)
.|.++.|++++|.+.... .++.++. |+.|||++|.++. +..+=.++.+++.|.++.|.+... ..++++-+|..|
T Consensus 306 ~Pkir~L~lS~N~i~~v~--nLa~L~~-L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnL 379 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQ--NLAELPQ-LQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNL 379 (490)
T ss_pred ccceeEEeccccceeeeh--hhhhccc-ceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheec
Confidence 344444444444443111 1344443 5555555555542 222223455666666666655422 345667777888
Q ss_pred eccCcccccc-CCccccCCCCCcEEeccCCccCcc
Q 038612 352 YLYGNSLEGN-IPSSLGNLTLLTKLALDFNNLQGN 385 (678)
Q Consensus 352 ~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 385 (678)
|+++|+|... -...++++|.|+++.+.+|.+.+.
T Consensus 380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888877531 124578888888888888887753
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=4.2e-10 Score=118.74 Aligned_cols=245 Identities=23% Similarity=0.299 Sum_probs=130.5
Q ss_pred CCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCE
Q 038612 120 NLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKS 199 (678)
Q Consensus 120 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~ 199 (678)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|.|... ...+..+++|++|++++|.++...+.. .++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGLS---TLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccchh---hccchhh
Confidence 44555555566666552 223356667777777777776632 222556677777777777766443332 4455777
Q ss_pred EEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccC-CCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEE
Q 038612 200 LIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVS-IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWL 278 (678)
Q Consensus 200 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 278 (678)
|++++|.++.. ..+..++.|+.+++++|++....+ . ...+.+++.+.+.+|.+.... .+..+..
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--------~~~~~~~---- 209 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--------GLDLLKK---- 209 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--------chHHHHH----
Confidence 77777776632 344556677777777776654333 1 234444444444444443321 1111112
Q ss_pred EcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCc--cccccccccceeeeccCcccCCCcccceeeccCc
Q 038612 279 ELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLV--NLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGN 356 (678)
Q Consensus 279 ~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 356 (678)
+..+++..|.++..-+ +..+. .|+.+++++|.+... +..+..+..+..|++.+|
T Consensus 210 ---------------------l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 210 ---------------------LVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ---------------------HHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhc
Confidence 3333445554442221 11222 266777777766522 244556677777777777
Q ss_pred cccccCCccccCCCCCcEEeccCCccCcc---CCC-CCCCcCCCceEecCCCcccccc
Q 038612 357 SLEGNIPSSLGNLTLLTKLALDFNNLQGN---IPS-SLGSCQNLMELIVSHNKLNGTL 410 (678)
Q Consensus 357 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~ 410 (678)
++... ..+...+.+..+....+.+... ... .....+.++.+.+..|......
T Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 266 RISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 66532 2234455566666666655421 111 1344567777777777665433
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=4.7e-09 Score=77.39 Aligned_cols=59 Identities=44% Similarity=0.594 Sum_probs=34.0
Q ss_pred CCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCc
Q 038612 468 SLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNH 526 (678)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 526 (678)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555566666666666655555555666666666666554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.4e-08 Score=74.83 Aligned_cols=61 Identities=38% Similarity=0.403 Sum_probs=39.2
Q ss_pred cccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCcc
Q 038612 346 KNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKL 406 (678)
Q Consensus 346 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 406 (678)
|+|++|++++|++....+..|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655555666666666666666666666666666666666666666653
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=2.8e-09 Score=112.48 Aligned_cols=152 Identities=26% Similarity=0.308 Sum_probs=67.6
Q ss_pred CcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCC-CCCCCcCCC
Q 038612 318 IGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIP-SSLGSCQNL 396 (678)
Q Consensus 318 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 396 (678)
+..+++|+.|++++|.|+... .+..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISL 188 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccch
Confidence 344555555555555554332 233444456666666655522 223445556666666665553322 1 2445555
Q ss_pred ceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcc--cCCeeecccCcccccCCccccCCCCCCEEEC
Q 038612 397 MELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLK--NLARLDISMNHFFGEIPATLSACTSLEYLYM 474 (678)
Q Consensus 397 ~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 474 (678)
+.+++.+|.+... ..+.....+ ..+++..|.++..-+. ..+. .|+.+++++|++. ..+..+..+..+..|++
T Consensus 189 ~~l~l~~n~i~~i--~~~~~~~~l-~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 189 EELDLGGNSIREI--EGLDLLKKL-VLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL 262 (414)
T ss_pred HHHhccCCchhcc--cchHHHHHH-HHhhcccccceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccch
Confidence 5666666554311 111111111 1224444444422211 1111 2555555555554 22233444455555555
Q ss_pred cCCccc
Q 038612 475 QGNSFG 480 (678)
Q Consensus 475 ~~n~l~ 480 (678)
.+|++.
T Consensus 263 ~~n~~~ 268 (414)
T KOG0531|consen 263 SSNRIS 268 (414)
T ss_pred hhcccc
Confidence 555543
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.58 E-value=6.1e-08 Score=65.14 Aligned_cols=39 Identities=51% Similarity=0.975 Sum_probs=31.3
Q ss_pred HHhHHHHHHHHhcCC-CCCCCCCCCCCC--CCCCCccccccc
Q 038612 34 ETDRLALLAIKSQFH-DPLEVTSSWDTS--VNLCQWTGVTCG 72 (678)
Q Consensus 34 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 72 (678)
++|++||++||.++. +|.+.+.+|+.. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999999 577899999987 799999999995
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.7e-09 Score=99.85 Aligned_cols=181 Identities=22% Similarity=0.226 Sum_probs=99.5
Q ss_pred CCCEEEcccCcCCCC-CCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCc-ccccCCCCcccccccCCCC
Q 038612 196 NLKSLIVAQNNLTGP-IPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANN-LGAEASNDLDFVFSLTNCS 273 (678)
Q Consensus 196 ~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~ 273 (678)
.|++|||+...++.. +-..++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.++ ++... .---+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----LQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----HHHHHHhhh
Confidence 366666666555421 11234556666666666666666555556666666666665442 22111 111356777
Q ss_pred CCcEEEcccCCCCccc-ChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceee
Q 038612 274 KLEWLELRKNQFGGNL-PHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLY 352 (678)
Q Consensus 274 ~L~~L~L~~n~~~~~~-p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 352 (678)
.|..|+|+++.+..+. ...+++...+|+.|+++++.-. |. .+ .+..-...+++|.+||
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------------l~-----~s----h~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------------LQ-----KS----HLSTLVRRCPNLVHLD 319 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------------hh-----hh----HHHHHHHhCCceeeec
Confidence 8888888887755332 2344555666777777776421 00 00 1111234567777777
Q ss_pred ccCcc-ccccCCccccCCCCCcEEeccCCccCccCCC---CCCCcCCCceEecCCC
Q 038612 353 LYGNS-LEGNIPSSLGNLTLLTKLALDFNNLQGNIPS---SLGSCQNLMELIVSHN 404 (678)
Q Consensus 353 l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n 404 (678)
|++|- ++......|..++.|++|.++.|... +|. .+...|+|.+|++.++
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 77653 33333334556777777777777532 332 2455677777777665
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.6e-09 Score=97.27 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCEEECCCCCCcc-ccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccccc-ccc-cCcccccCCCCCcEE
Q 038612 99 KLEKLSIAVNHLRG-QLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENN-FSG-MVPVSIYNISSLEMI 175 (678)
Q Consensus 99 ~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L 175 (678)
.|++||||...++. .+..-+..|.+|+.|.+.++.+.+.+...+++-.+|+.|||+.++ ++. ...--+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47888888877753 344456778888888888888887777778888888888888764 321 122236678888888
Q ss_pred ECCCCCCCccCChh-hhcCCCCCCEEEcccCcC---CCCCCccCcCCCCCcEEeccCCcc-eeccCCCCCCCCCCCeEEc
Q 038612 176 FLPANRLEGILPLN-IGFNLPNLKSLIVAQNNL---TGPIPHSLSNASNLIELNLGQNHF-TGKVSIDFNGLSDLAWLSF 250 (678)
Q Consensus 176 ~l~~n~~~~~~p~~-~~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l 250 (678)
++++|.+....-.. +..--++|+.|+++++.- ...+..-..++++|.+|||++|.. +......|.+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765433221 122236777888877531 111222235677788888877642 2222233445555555555
Q ss_pred ccC
Q 038612 251 EAN 253 (678)
Q Consensus 251 ~~n 253 (678)
+.|
T Consensus 346 sRC 348 (419)
T KOG2120|consen 346 SRC 348 (419)
T ss_pred hhh
Confidence 544
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=8.4e-09 Score=107.66 Aligned_cols=180 Identities=27% Similarity=0.281 Sum_probs=113.3
Q ss_pred CccccCCCCCcEEeccCCccCccCCCCCCCc-CCCceEecCCCccc----------cccCcccccccccceEEEcCCCcc
Q 038612 363 PSSLGNLTLLTKLALDFNNLQGNIPSSLGSC-QNLMELIVSHNKLN----------GTLPQQILEIRTLSFQLDLSNNLL 431 (678)
Q Consensus 363 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~----------~~~p~~~~~~~~l~~~L~l~~n~l 431 (678)
|-.+..+.+|++|.+.++.+... ..+..+ ..|+.|... |.+. |.+-..+.. ..+ ...+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~W-n~L-~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVW-NKL-ATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhh-hhH-hhhhcchhhH
Confidence 45567788999999999988631 111111 123333222 2111 111111111 112 3456777777
Q ss_pred cccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccC
Q 038612 432 SGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYL 511 (678)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 511 (678)
. ....++.-++.|+.|||++|+++... .+..|+.|++|||+.|.+....--...++. |+.|++++|.++.. ..+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhH
Confidence 6 44456667788888999998886433 677888889999999888743333333444 88889999888744 346
Q ss_pred CCCCCCCEEeCCcCcceeeCC--CCCccCCCCceeccCCCCCcc
Q 038612 512 ENLPFLQYLDLSYNHFEGQVP--AKGVFHNKTSISLVGNENLCG 553 (678)
Q Consensus 512 ~~l~~L~~L~l~~n~l~~~~p--~~~~~~~l~~~~~~~n~~lc~ 553 (678)
.++.+|+.||+++|-+++.-- ..+.+..+..+.+.|||..|.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 788888889999888775321 224456677888889987774
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.1e-08 Score=92.81 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCCCCCEEEccccccccc--CcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCC-CCccCcCCCC
Q 038612 144 QLRSLKFLNVEENNFSGM--VPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGP-IPHSLSNASN 220 (678)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~ 220 (678)
.++.++.|||.+|.|+.. +-..+.+++.|++|+++.|++...+...-. ...+|+.|.|.+..+.-. ....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345566666666666521 223345566666666666665533221111 455666666666655421 1223445566
Q ss_pred CcEEeccCCc
Q 038612 221 LIELNLGQNH 230 (678)
Q Consensus 221 L~~L~L~~n~ 230 (678)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666666553
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=1.2e-07 Score=87.69 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=56.7
Q ss_pred ccCCCCCcEEECCCCCCCccCChhhh---cCCCCCCEEEcccCcCCCCCCcc-------------CcCCCCCcEEeccCC
Q 038612 166 IYNISSLEMIFLPANRLEGILPLNIG---FNLPNLKSLIVAQNNLTGPIPHS-------------LSNASNLIELNLGQN 229 (678)
Q Consensus 166 ~~~l~~L~~L~l~~n~~~~~~p~~~~---~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n 229 (678)
+-+|++|+..+||+|.+....|..+. +.-..|.+|.+++|.+.-.-... ..+-+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 44555555555555555544443221 24455666666666543111111 123456777777777
Q ss_pred cceeccCC----CCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCC
Q 038612 230 HFTGKVSI----DFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFG 286 (678)
Q Consensus 230 ~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 286 (678)
++..-... .+..-..|+++.+..|.+.......+. ...+..+.+|+.|||.+|-++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~-~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLA-FLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHH-HHHHHHhCcceeeeccccchh
Confidence 66422111 122223555555555555433221111 123445566666666666554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=3.3e-08 Score=103.32 Aligned_cols=175 Identities=25% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCCCEEECCCCCCcccc-ChhhcCCccCcEEeccCCCCccCCCccCCCC------------------------------
Q 038612 97 WSKLEKLSIAVNHLRGQL-PASIGNLSALQAFDVGENTLHGRIPESLGQL------------------------------ 145 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l------------------------------ 145 (678)
+++++.|.+-.-.-.+.. |-.+..++.||+|.+.++.+.. . ..+..+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 344455544332222221 5567778888888888887652 0 111000
Q ss_pred ---CCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCc
Q 038612 146 ---RSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLI 222 (678)
Q Consensus 146 ---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 222 (678)
-.|.+.+.++|.+. ....++.-++.|+.|||++|+++..- .+. .+++|++|||+.|.+....--....+. |+
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHH-hcccccccccccchhccccccchhhhh-he
Confidence 12333344444443 33344444555555555555554321 222 455555555555555422111222232 55
Q ss_pred EEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCC
Q 038612 223 ELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQF 285 (678)
Q Consensus 223 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 285 (678)
.|.+.+|.++... .+.++.+|+.|+++.|-+..... ...+..+..|+.|+|.+|.+
T Consensus 236 ~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hse-----L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchh-----hhHHHHHHHHHHHhhcCCcc
Confidence 5555555554221 23445555555555554443211 11233334455555555544
No 51
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.21 E-value=5.6e-07 Score=95.25 Aligned_cols=61 Identities=30% Similarity=0.490 Sum_probs=49.8
Q ss_pred CceeeHHHHHHhhhcccc---------cceeccCCCceEEEEEECCCC---eEEEEEEeeccCC-CcccCcccC
Q 038612 618 FPFVSYAALRKATNEFST---------SNMIGQGSFGIVYKGIFSENG---MVVAVKVINLNQK-GGFRSFVAE 678 (678)
Q Consensus 618 ~~~~s~~el~~at~~f~~---------~~~iG~G~~G~Vykg~l~~~g---~~vAvK~l~~~~~-~~~~~F~~E 678 (678)
...++|+|.-+|.+.|+. +++||.|.||+||+|.|.-.| ..||||.|+++.. ..+++|..|
T Consensus 607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~E 680 (996)
T KOG0196|consen 607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSE 680 (996)
T ss_pred cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhh
Confidence 356789999888888876 789999999999999995444 5999999998753 446788766
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=3.6e-07 Score=84.71 Aligned_cols=182 Identities=20% Similarity=0.219 Sum_probs=101.9
Q ss_pred CcEEEEEcCCCCCCCc------ccCCCCCCCCEEECCCCC---Cccc-------cChhhcCCccCcEEeccCCCCccCCC
Q 038612 76 QRVTELYLRNQSLGAD------IGYSSWSKLEKLSIAVNH---LRGQ-------LPASIGNLSALQAFDVGENTLHGRIP 139 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~------~~~~~l~~L~~L~Ls~n~---~~~~-------~~~~l~~l~~L~~L~ls~n~l~~~~p 139 (678)
..++.++|++|.+... ..+.+-++|+..+++.-. .... +..++.+|++|+..+||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4677788888877654 234556677777776531 1122 22345577888888888887765555
Q ss_pred cc----CCCCCCCCEEEccccccccc----Cc---------ccccCCCCCcEEECCCCCCCccCChhh----hcCCCCCC
Q 038612 140 ES----LGQLRSLKFLNVEENNFSGM----VP---------VSIYNISSLEMIFLPANRLEGILPLNI----GFNLPNLK 198 (678)
Q Consensus 140 ~~----~~~l~~L~~L~L~~n~l~~~----~~---------~~~~~l~~L~~L~l~~n~~~~~~p~~~----~~~l~~L~ 198 (678)
.. +++-+.|.+|.|++|.+.-. +- ....+-+.|+......|++. ..|... ...-.+|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence 43 45667788888877765411 11 11234567777777777665 222211 11124677
Q ss_pred EEEcccCcCCCC-----CCccCcCCCCCcEEeccCCcceecc----CCCCCCCCCCCeEEcccCccccc
Q 038612 199 SLIVAQNNLTGP-----IPHSLSNASNLIELNLGQNHFTGKV----SIDFNGLSDLAWLSFEANNLGAE 258 (678)
Q Consensus 199 ~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~ 258 (678)
++.+..|.|.-. +-..+..+.+|+.||+.+|-++-.. ...+...+.|+.|.+..|-++..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 777777765411 0012334567777777777665221 22334445566666666655543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=4.7e-07 Score=85.06 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=37.0
Q ss_pred CcccceeeccCccccccCC-ccccCCCCCcEEeccCCccCcc-CCCCCCCcCCCceEecCCCcccc
Q 038612 345 LKNLQLLYLYGNSLEGNIP-SSLGNLTLLTKLALDFNNLQGN-IPSSLGSCQNLMELIVSHNKLNG 408 (678)
Q Consensus 345 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 408 (678)
+|++..+.+..|.+..... ..+..+|.+.-|+|+.|+|... .-+.+..++.|..|.++++++..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4456666666665543221 2334456666777777776532 12345667777777777777653
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=3.7e-07 Score=75.75 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=41.4
Q ss_pred EEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcc
Q 038612 424 LDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNL 503 (678)
Q Consensus 424 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 503 (678)
.+|++|.+....+......+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+
T Consensus 58 i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 58 ISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 455555555433333333445556666666655 45555555666666666666554 2333344455555555555555
Q ss_pred c
Q 038612 504 S 504 (678)
Q Consensus 504 ~ 504 (678)
.
T Consensus 136 ~ 136 (177)
T KOG4579|consen 136 A 136 (177)
T ss_pred c
Confidence 4
No 55
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=97.95 E-value=2.3e-06 Score=85.76 Aligned_cols=31 Identities=39% Similarity=0.651 Sum_probs=26.4
Q ss_pred ccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 635 TSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
...+||+|+||.||||.|. + +.||||.+...
T Consensus 214 l~eli~~Grfg~V~KaqL~-~-~~VAVKifp~~ 244 (534)
T KOG3653|consen 214 LLELIGRGRFGCVWKAQLD-N-RLVAVKIFPEQ 244 (534)
T ss_pred hHHHhhcCccceeehhhcc-C-ceeEEEecCHH
Confidence 3567999999999999995 4 99999999543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.89 E-value=7.5e-07 Score=73.96 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCCCc----ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEE
Q 038612 77 RVTELYLRNQSLGAD----IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLN 152 (678)
Q Consensus 77 ~v~~l~l~~~~l~~~----~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 152 (678)
....++|+++.+.-. ..+....+|+..+|++|.+....+..-...+.++.|++++|.++ .+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344455555543311 23344455666666666665333333334456666666666666 5566666666666666
Q ss_pred cccccccccCcccccCCCCCcEEECCCCCCCccCChhh
Q 038612 153 VEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNI 190 (678)
Q Consensus 153 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 190 (678)
++.|.+. ..|..+..|.+|-+|+..+|... .+|.++
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 6666665 45555555666666666666655 444443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=3.5e-06 Score=92.92 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCCCEEEccccccc-ccCccccc-CCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcE
Q 038612 146 RSLKFLNVEENNFS-GMVPVSIY-NISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIE 223 (678)
Q Consensus 146 ~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 223 (678)
.+|++||+++...- ...|..++ .+|.|+.|.+++-.+...--..++..+|+|..||+++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666554321 11222222 3566666666655543222223344566666666666666533 45666666666
Q ss_pred EeccCCccee-ccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhH
Q 038612 224 LNLGQNHFTG-KVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFI 293 (678)
Q Consensus 224 L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~ 293 (678)
|.+.+-.+.. ..-..+.++++|+.||++.............+.+.-..+|+|+.||.+++.+...+-+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 6665544432 112234455666666665544332221000112222335566666666665554443333
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3.9e-05 Score=68.57 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=63.3
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEE
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
.+...+||++|.+... ..|..++.|.+|.|++|+|+.+.|.--.-+++|+.|.|.+|.+...-.-.-...+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455667777766522 34667777777777777777666655555667777777777654221111112567777777
Q ss_pred cccCcCCCCCC---ccCcCCCCCcEEeccCC
Q 038612 202 VAQNNLTGPIP---HSLSNASNLIELNLGQN 229 (678)
Q Consensus 202 l~~n~l~~~~~---~~l~~l~~L~~L~L~~n 229 (678)
+-+|+++..-- ..+..+++|+.||+..-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777653211 23456677777776543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.9e-05 Score=53.04 Aligned_cols=35 Identities=31% Similarity=0.577 Sum_probs=13.4
Q ss_pred CcEEeccCCCCccCCCccCCCCCCCCEEEccccccc
Q 038612 124 LQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFS 159 (678)
Q Consensus 124 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 159 (678)
|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444 23333444444444444444433
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=7e-05 Score=76.11 Aligned_cols=132 Identities=24% Similarity=0.337 Sum_probs=58.0
Q ss_pred CcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCC-ccccccCcccccccccceE
Q 038612 345 LKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHN-KLNGTLPQQILEIRTLSFQ 423 (678)
Q Consensus 345 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~~l~~~ 423 (678)
+.+++.|++++|.++ .+|. + .++|++|.+++|.-...+|..+ .++|+.|++++| .+. .+|..+ +.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sL-------e~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESV-------RS 116 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccccc-------ce
Confidence 455555555555544 2231 1 1245566665543333444333 245666666665 222 333321 34
Q ss_pred EEcCCCccc--ccCCccccCcccCCeeecccCccc--ccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECC
Q 038612 424 LDLSNNLLS--GYLPFRVGNLKNLARLDISMNHFF--GEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLS 499 (678)
Q Consensus 424 L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 499 (678)
|+++.+... +.+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|+++
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 444443322 1122 24555555432211 001110 1145677777666644 2333333 466666666
Q ss_pred CC
Q 038612 500 RN 501 (678)
Q Consensus 500 ~n 501 (678)
.|
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
No 61
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.77 E-value=6.9e-06 Score=84.93 Aligned_cols=50 Identities=32% Similarity=0.538 Sum_probs=35.8
Q ss_pred ceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccCC--CcccCcccC
Q 038612 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK--GGFRSFVAE 678 (678)
Q Consensus 619 ~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~--~~~~~F~~E 678 (678)
..+.++|+.. ...||+|+||+||||.|.++ ||||.|+.... ...++|.+|
T Consensus 387 WeIp~~ev~l-------~~rIGsGsFGtV~Rg~whGd---VAVK~Lnv~~pt~~qlqaFKnE 438 (678)
T KOG0193|consen 387 WEIPPEEVLL-------GERIGSGSFGTVYRGRWHGD---VAVKLLNVDDPTPEQLQAFKNE 438 (678)
T ss_pred cccCHHHhhc-------cceeccccccceeecccccc---eEEEEEecCCCCHHHHHHHHHH
Confidence 3455666544 46799999999999999854 99999975432 234557655
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=3.9e-05 Score=51.53 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=22.7
Q ss_pred CCCCEEEcccccccccCcccccCCCCCcEEECCCCCCC
Q 038612 146 RSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLE 183 (678)
Q Consensus 146 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 183 (678)
++|++|++++|+|+ .+|..+.+|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 34545666666666666666665
No 63
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.59 E-value=0.00015 Score=72.56 Aligned_cols=32 Identities=38% Similarity=0.686 Sum_probs=27.5
Q ss_pred cccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 634 STSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.-.+.||+|.||+|+||.|. |+-||||.+...
T Consensus 214 ~L~e~IGkGRyGEVwrG~wr--Ge~VAVKiF~sr 245 (513)
T KOG2052|consen 214 VLQEIIGKGRFGEVWRGRWR--GEDVAVKIFSSR 245 (513)
T ss_pred EEEEEecCccccceeecccc--CCceEEEEeccc
Confidence 33678999999999999997 599999999643
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.54 E-value=1.8e-06 Score=85.13 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCCCCcEEEcccCCC-CcccChhHhhccccCcEEEccCcc-eeccCCccC-cCCccccccccccceeee--ccCcccCCC
Q 038612 271 NCSKLEWLELRKNQF-GGNLPHFIANLSKTMTIIDMGENK-LSGTIPLGI-GNLVNLNLFSLHLNQLIG--TIPHVIGSL 345 (678)
Q Consensus 271 ~~~~L~~L~L~~n~~-~~~~p~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~~~~--~~~~~~~~l 345 (678)
.+..|+.|+.+++.. ++..-..++.-..+|+.+.++.|+ |+..-...+ .+++.|+.+++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345566666655432 222222333333446666666664 221111111 345667777777664321 122223467
Q ss_pred cccceeeccCccccccC-----CccccCCCCCcEEeccCCccC-ccCCCCCCCcCCCceEecCCCc
Q 038612 346 KNLQLLYLYGNSLEGNI-----PSSLGNLTLLTKLALDFNNLQ-GNIPSSLGSCQNLMELIVSHNK 405 (678)
Q Consensus 346 ~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 405 (678)
+.|+.|.++++...... ...-..+..|+.+.+++++.. ...-..+..+++|+.+++-+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 78888888877543211 222345677888888888654 2233445667788888877775
No 65
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=97.52 E-value=3.8e-05 Score=82.32 Aligned_cols=46 Identities=33% Similarity=0.552 Sum_probs=33.6
Q ss_pred ccccceeccCCCceEEEEEECCCCe----EEEEEEeecc-CCCcccCcccC
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGM----VVAVKVINLN-QKGGFRSFVAE 678 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~----~vAvK~l~~~-~~~~~~~F~~E 678 (678)
+...++||+|+||+||||.|-+.|+ +||||.+... +.+...||.+|
T Consensus 698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~Lde 748 (1177)
T KOG1025|consen 698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDE 748 (1177)
T ss_pred hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHH
Confidence 4567899999999999999844453 9999999654 33344555543
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00028 Score=71.89 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=21.6
Q ss_pred ccCCeeecccCcccccCCccccCCCCCCEEECcCCc
Q 038612 443 KNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNS 478 (678)
Q Consensus 443 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 478 (678)
++|++|++++|... ..|..+. .+|++|+++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 46888888877754 3343332 578888887763
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=6.8e-05 Score=82.93 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=34.0
Q ss_pred CccCcEEeccCCCCcc-CCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCc-cCChhhhcCCCCCC
Q 038612 121 LSALQAFDVGENTLHG-RIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEG-ILPLNIGFNLPNLK 198 (678)
Q Consensus 121 l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~ 198 (678)
+|.|+.|.+++-.+.. .+-....++++|..||+|+++++.. ..+++|++|+.|.+.+=.+.. ..-.+++ .+++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh-cccCCC
Confidence 4455555554433321 1112233444555555555554422 344445555554444433331 1112333 445555
Q ss_pred EEEcccC
Q 038612 199 SLIVAQN 205 (678)
Q Consensus 199 ~L~l~~n 205 (678)
.||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 5555443
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.42 E-value=4.3e-06 Score=82.57 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=37.7
Q ss_pred CCCEEECCCCCCccc--cChhhcCCccCcEEeccCCC-CccCCCccC-CCCCCCCEEEcccc-cccccCcc-cccCCCCC
Q 038612 99 KLEKLSIAVNHLRGQ--LPASIGNLSALQAFDVGENT-LHGRIPESL-GQLRSLKFLNVEEN-NFSGMVPV-SIYNISSL 172 (678)
Q Consensus 99 ~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L 172 (678)
.|+.|.+.++.-.+. +-..-.+++++++|++.++. ++...-..+ ..+++|++|+|..| .++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466677766543322 12233456666666665553 111111111 24555666666553 23322222 22345555
Q ss_pred cEEECCCCC
Q 038612 173 EMIFLPANR 181 (678)
Q Consensus 173 ~~L~l~~n~ 181 (678)
++|+++++.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 555555553
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.38 E-value=0.00053 Score=59.38 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCc
Q 038612 94 YSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLE 173 (678)
Q Consensus 94 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (678)
|..+++|+.+.+.. .+.......|.++++|+.+++..+ +...-...|.++++|+.+.+.+ .+.......|.++++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444555555442 333333444555555555555443 3323333444444455555543 22222333444444454
Q ss_pred EEECC
Q 038612 174 MIFLP 178 (678)
Q Consensus 174 ~L~l~ 178 (678)
.+++.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 44443
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00041 Score=62.22 Aligned_cols=88 Identities=22% Similarity=0.251 Sum_probs=38.7
Q ss_pred hcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccccccccc-CcccccCCCCCcEEECCCCCCCccCC--hhhhcCC
Q 038612 118 IGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGM-VPVSIYNISSLEMIFLPANRLEGILP--LNIGFNL 194 (678)
Q Consensus 118 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~~l 194 (678)
|..++.|..|.+++|+|+.+-|.--.-+++|.+|.|.+|+|... .-..+..+++|++|.+-+|.++..-- ..+...+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 33444444555555554433333223334455555555554311 11223445555555555554431110 1112255
Q ss_pred CCCCEEEcccC
Q 038612 195 PNLKSLIVAQN 205 (678)
Q Consensus 195 ~~L~~L~l~~n 205 (678)
|+|+.||+..-
T Consensus 140 p~l~~LDF~kV 150 (233)
T KOG1644|consen 140 PSLRTLDFQKV 150 (233)
T ss_pred CcceEeehhhh
Confidence 66666666543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00043 Score=59.94 Aligned_cols=106 Identities=28% Similarity=0.291 Sum_probs=43.6
Q ss_pred hhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCC
Q 038612 116 ASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLP 195 (678)
Q Consensus 116 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~ 195 (678)
..|.++++|+.+.+.. .+...-...|.++++|+.+++.++ +.......|.++.+|+.+.+.+ .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3455666666666653 344444455666666666666553 4434444555555566666643 222 23333333455
Q ss_pred CCCEEEcccCcCCCCCCccCcCCCCCcEEecc
Q 038612 196 NLKSLIVAQNNLTGPIPHSLSNASNLIELNLG 227 (678)
Q Consensus 196 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 227 (678)
+|+.+++..+ +.......|.++ +|+.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555443 332333344444 55555444
No 72
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.30 E-value=0.00014 Score=77.71 Aligned_cols=39 Identities=26% Similarity=0.633 Sum_probs=31.4
Q ss_pred hhhcccccceeccCCCceEEEEEEC----------------CCCeEEEEEEeecc
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFS----------------ENGMVVAVKVINLN 667 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~----------------~~g~~vAvK~l~~~ 667 (678)
.+++|...+.||+|+||.||||++. ..++.||||+++..
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~ 197 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMD 197 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEeccc
Confidence 4668999999999999999999751 12368999999654
No 73
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.0003 Score=68.86 Aligned_cols=42 Identities=31% Similarity=0.545 Sum_probs=33.3
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccC
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRS 674 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~ 674 (678)
+.+.+++|.|+||.||+|++...++.||||+...+.+-..+|
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrE 67 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRE 67 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHH
Confidence 455789999999999999997666899999997665433333
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.00034 Score=65.51 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=17.4
Q ss_pred CCccCcEEeccCC--CCccCCCccCCCCCCCCEEEccccccc
Q 038612 120 NLSALQAFDVGEN--TLHGRIPESLGQLRSLKFLNVEENNFS 159 (678)
Q Consensus 120 ~l~~L~~L~ls~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 159 (678)
.+++|+.|.+|.| ++.+.++.....+++|++|++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444444444444 333333333333445555555555443
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00029 Score=65.94 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCC--CCccccChhhcCCccCcEEeccCCCCccCCCcc---CCCCCCCC
Q 038612 75 HQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVN--HLRGQLPASIGNLSALQAFDVGENTLHGRIPES---LGQLRSLK 149 (678)
Q Consensus 75 ~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~L~ 149 (678)
...+..+++.+..++....+..+++|+.|.+|.| ++++.++.....+++|++|++++|.+.. ++. +..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 4555666677777777788899999999999999 7777777777788999999999999872 333 44666777
Q ss_pred EEEccccccc
Q 038612 150 FLNVEENNFS 159 (678)
Q Consensus 150 ~L~L~~n~l~ 159 (678)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 8888777655
No 76
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.00031 Score=76.23 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=33.5
Q ss_pred cceeccCCCceEEEEEECCCC-----eEEEEEEeeccCC-CcccCcccC
Q 038612 636 SNMIGQGSFGIVYKGIFSENG-----MVVAVKVINLNQK-GGFRSFVAE 678 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g-----~~vAvK~l~~~~~-~~~~~F~~E 678 (678)
...||+|.||+||+|+..... +.||||.|+.... +..+||.+|
T Consensus 491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~RE 539 (774)
T KOG1026|consen 491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRRE 539 (774)
T ss_pred hhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHH
Confidence 456999999999999983221 6999999986544 467889876
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0001 Score=69.10 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=46.2
Q ss_pred CCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccC-cccccCCCCCcEE
Q 038612 97 WSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMV-PVSIYNISSLEMI 175 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 175 (678)
+.+.+.|+.-++.++++ .-..+++.|++|.||-|.|+..- .+..|++|+.|.|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455666666666543 12345666677777766666432 2566666777777666665221 1234455555555
Q ss_pred ECCCCCCCcc
Q 038612 176 FLPANRLEGI 185 (678)
Q Consensus 176 ~l~~n~~~~~ 185 (678)
.|..|.-.+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 5555544433
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00013 Score=68.39 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=65.1
Q ss_pred CccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEE
Q 038612 121 LSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSL 200 (678)
Q Consensus 121 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L 200 (678)
+.+.+.|++.++.+.++ ....+++.|++|.|+-|.|+.. ..+..|++|++|+|..|.|...-......++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45666777777777643 2345677888888888887643 3366778888888888877644333444577777777
Q ss_pred EcccCcCCCCCCcc-----CcCCCCCcEEe
Q 038612 201 IVAQNNLTGPIPHS-----LSNASNLIELN 225 (678)
Q Consensus 201 ~l~~n~l~~~~~~~-----l~~l~~L~~L~ 225 (678)
.|..|.-.+.-+.. +.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766544432 33455555553
No 79
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=96.32 E-value=0.0017 Score=66.35 Aligned_cols=30 Identities=47% Similarity=0.764 Sum_probs=25.0
Q ss_pred cceeccCCCceEEEEEECCCCeE-EEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMV-VAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~-vAvK~l~~~ 667 (678)
.+.+|+|+||+||||.|. | +. ||||++...
T Consensus 46 ~~~iG~G~~g~V~~~~~~-g-~~~vavK~~~~~ 76 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWR-G-TDVVAVKIISDP 76 (362)
T ss_pred hhhcccCCceeEEEEEeC-C-ceeEEEEEecch
Confidence 345999999999999996 3 55 999999754
No 80
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.29 E-value=0.0038 Score=68.62 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=33.3
Q ss_pred hhhcccccceeccCCCceEEEEEECCC----CeEEEEEEeec
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSEN----GMVVAVKVINL 666 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~----g~~vAvK~l~~ 666 (678)
..++|...+.||+|+||.||+|+..++ |..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 567888899999999999999999766 68999999853
No 81
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.28 E-value=0.0023 Score=65.51 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=29.9
Q ss_pred hhcccccceeccCCCceEEEEEECC-CCeEEEEEEee
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSE-NGMVVAVKVIN 665 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~-~g~~vAvK~l~ 665 (678)
.++|...+.||+|+||+||+|.... +|+.||||++.
T Consensus 17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~ 53 (365)
T PRK09188 17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRV 53 (365)
T ss_pred cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEec
Confidence 3567888999999999999998743 45889999975
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00066 Score=73.84 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=56.2
Q ss_pred CccCcEEeccCCCCccC--CCccCCCCCCCCEEEcccc-cccccC----cccccCCCCCcEEECCCCC-CCccCChhhhc
Q 038612 121 LSALQAFDVGENTLHGR--IPESLGQLRSLKFLNVEEN-NFSGMV----PVSIYNISSLEMIFLPANR-LEGILPLNIGF 192 (678)
Q Consensus 121 l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~ 192 (678)
++.|+.|.+..+.-... +-.....+++|+.|+++++ ...... ......+.+|+.|+++++. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532211 2233445666666666652 111111 1233345666777777666 44333344444
Q ss_pred CCCCCCEEEcccCc-CCCC-CCccCcCCCCCcEEeccCCcc
Q 038612 193 NLPNLKSLIVAQNN-LTGP-IPHSLSNASNLIELNLGQNHF 231 (678)
Q Consensus 193 ~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l 231 (678)
.+++|++|.+.++. ++.. +......+++|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 46677777766555 3322 111234566677777776544
No 83
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.10 E-value=0.0021 Score=67.13 Aligned_cols=54 Identities=30% Similarity=0.400 Sum_probs=36.1
Q ss_pred CceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCe---E-EEEEEeecc---CCCcccCcccC
Q 038612 618 FPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGM---V-VAVKVINLN---QKGGFRSFVAE 678 (678)
Q Consensus 618 ~~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~---~-vAvK~l~~~---~~~~~~~F~~E 678 (678)
...+.++++. -.+.||+|+||.||+|++..++. . ||||+.+.. .+...+||++|
T Consensus 151 ~Wel~H~~v~-------l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~E 211 (474)
T KOG0194|consen 151 KWELSHSDIE-------LGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKE 211 (474)
T ss_pred ccEEeccCcc-------ccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHH
Confidence 3445566653 23789999999999999954322 3 899999752 23334567655
No 84
>PTZ00284 protein kinase; Provisional
Probab=96.09 E-value=0.0043 Score=67.11 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=37.1
Q ss_pred eHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 622 s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..+++...+++|...+.||+|+||+||+|+....++.||||+++.
T Consensus 120 ~~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~ 164 (467)
T PTZ00284 120 LGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN 164 (467)
T ss_pred cCCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence 344555667889889999999999999998866668999999953
No 85
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=95.77 E-value=0.0054 Score=59.49 Aligned_cols=35 Identities=31% Similarity=0.617 Sum_probs=28.9
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+|..-|.|++|.||.||||.=....+.||.||++-
T Consensus 77 efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~km 111 (419)
T KOG0663|consen 77 EFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKM 111 (419)
T ss_pred HHHHHhhcccCcceeEEEeccCCcceeEEeeeccc
Confidence 45566899999999999997644458999999964
No 86
>PTZ00036 glycogen synthase kinase; Provisional
Probab=95.48 E-value=0.01 Score=63.40 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=31.5
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+++|...+.||+|+||.||+|+..+.|+.||||++..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~ 101 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQ 101 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence 3467778899999999999999866679999999854
No 87
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.48 E-value=0.0034 Score=65.64 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=36.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccCcccC
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
+..-.+.+|.|-||.||-|+|..-.-.||||.|+.+.+ ..+||.+|
T Consensus 268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtM-eveEFLkE 313 (1157)
T KOG4278|consen 268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKE 313 (1157)
T ss_pred heeeeeccCCCcccceeeeeeeccceeeehhhhhhcch-hHHHHHHH
Confidence 34557889999999999999965557999999988765 35678765
No 88
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.47 E-value=0.011 Score=59.44 Aligned_cols=33 Identities=45% Similarity=0.802 Sum_probs=27.9
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
|.....||+|.||.||||.-..-++.||+|.+.
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~ 47 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIID 47 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEEEec
Confidence 445578999999999999876566899999995
No 89
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.45 E-value=0.0052 Score=69.65 Aligned_cols=45 Identities=33% Similarity=0.631 Sum_probs=33.3
Q ss_pred cccceeccCCCceEEEEEECCC-C----eEEEEEEeeccC-CCcccCcccC
Q 038612 634 STSNMIGQGSFGIVYKGIFSEN-G----MVVAVKVINLNQ-KGGFRSFVAE 678 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~-g----~~vAvK~l~~~~-~~~~~~F~~E 678 (678)
.-.+.||+|.||.||+|.+.+- | ..||||.++... .+...+|..|
T Consensus 695 ~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~E 745 (1025)
T KOG1095|consen 695 TLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKE 745 (1025)
T ss_pred EeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHH
Confidence 3467899999999999998432 1 359999997654 4545678765
No 90
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=95.39 E-value=0.01 Score=61.38 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=35.5
Q ss_pred HhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
...++|.--.+||+|+||.||-+.=.+.|...|.|+|+...
T Consensus 138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~ 178 (550)
T KOG0605|consen 138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSE 178 (550)
T ss_pred CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHH
Confidence 34567888999999999999999988888999999997543
No 91
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=95.37 E-value=0.021 Score=53.60 Aligned_cols=33 Identities=36% Similarity=0.358 Sum_probs=27.8
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+...+.||+|+||.||+|...+ |+.||||+...
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~-g~~vavK~~~~ 49 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPD-GNPVALKFHRL 49 (198)
T ss_pred hhcCCccccCcceEEEEEEcCC-CCEEEEEEEec
Confidence 4456789999999999999875 59999998754
No 92
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.33 E-value=0.013 Score=54.32 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.1
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.+|+|.||.||-|.-...+-.||+|++..
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfK 57 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFK 57 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEeeeeH
Confidence 457778999999999999999976668999999943
No 93
>PHA02988 hypothetical protein; Provisional
Probab=95.30 E-value=0.014 Score=58.42 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=33.5
Q ss_pred CceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 618 FPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 618 ~~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.+++++++ +.+...||+|++|.||+|.+. |+.||||+++..
T Consensus 12 ~~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~~--~~~vavK~~~~~ 54 (283)
T PHA02988 12 IKCIESDDID-----KYTSVLIKENDQNSIYKGIFN--NKEVIIRTFKKF 54 (283)
T ss_pred ceecCHHHcC-----CCCCeEEeeCCceEEEEEEEC--CEEEEEEecccc
Confidence 4456777773 334578999999999999994 499999999654
No 94
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=95.29 E-value=0.01 Score=62.08 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=27.6
Q ss_pred cccccceeccCCCceEEEEEE-----CCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l-----~~~g~~vAvK~l~~ 666 (678)
+|.-.+.||+|+||.||+|+. .+.+..||||+++.
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~ 75 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKP 75 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEEeccC
Confidence 456678899999999999974 22346899999964
No 95
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.14 E-value=0.015 Score=58.20 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=40.5
Q ss_pred eeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 620 FVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 620 ~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.++++.+++++|.-.+.||+|+||.||++.....|+.||+|.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~ 53 (286)
T cd06638 7 TIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDP 53 (286)
T ss_pred eEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecc
Confidence 35667778888999999999999999999999876679999999854
No 96
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=95.10 E-value=0.014 Score=58.55 Aligned_cols=46 Identities=28% Similarity=0.551 Sum_probs=40.1
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+..+++.+++++|.-.+.||+|+||.||+|...++|+.+|+|++..
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~ 57 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDP 57 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 5567778889999999999999999999999866679999999954
No 97
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=95.09 E-value=0.011 Score=61.20 Aligned_cols=32 Identities=44% Similarity=0.517 Sum_probs=27.4
Q ss_pred ccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 635 TSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..+.||+|+||.||+|+....|+.||||.+..
T Consensus 78 ~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 109 (353)
T PLN00034 78 RVNRIGSGAGGTVYKVIHRPTGRLYALKVIYG 109 (353)
T ss_pred hhhhccCCCCeEEEEEEECCCCCEEEEEEEec
Confidence 34679999999999999866669999999954
No 98
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=0.013 Score=60.22 Aligned_cols=35 Identities=37% Similarity=0.669 Sum_probs=27.8
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
|.....||+|.||.||||.=-..|..||.|++.-.
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d 153 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFD 153 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEEEeecc
Confidence 44456799999999999975445699999999643
No 99
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.011 Score=32.92 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=5.3
Q ss_pred CCEEEccccccc
Q 038612 148 LKFLNVEENNFS 159 (678)
Q Consensus 148 L~~L~L~~n~l~ 159 (678)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 100
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=94.90 E-value=0.019 Score=62.28 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=32.5
Q ss_pred HHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 627 ~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
....+.|.-.+.||+|+||+||+|.....|+.||||++..
T Consensus 28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~ 67 (496)
T PTZ00283 28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDM 67 (496)
T ss_pred cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEec
Confidence 3344567778899999999999998755569999999964
No 101
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=94.88 E-value=0.032 Score=57.63 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=37.7
Q ss_pred eHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 622 s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.-+++..++++|...+.||+|+||.||+|.....|+.||||+++.
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~ 52 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR 52 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecC
Confidence 345667788899999999999999999998755569999999964
No 102
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.80 E-value=0.015 Score=60.74 Aligned_cols=40 Identities=40% Similarity=0.488 Sum_probs=31.7
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcc
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGF 672 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~ 672 (678)
|.+-+.||.|+||.||-|.=.-..++||||++....+|..
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~ 67 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN 67 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccH
Confidence 6666789999999999996533448999999987666653
No 103
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.76 E-value=0.035 Score=59.29 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=33.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
.+|.-..++|+|.||+||.+.+...++..|||.++.+.
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~ 405 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGD 405 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccc
Confidence 45888899999999999999998777899999998653
No 104
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.70 E-value=0.027 Score=58.74 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=37.3
Q ss_pred HHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 623 YAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 623 ~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..++..+.++|...+.||+|+||.||++.....++.||+|.+..
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~ 78 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 78 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEH
Confidence 45556667889889999999999999999977779999999853
No 105
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=94.63 E-value=0.03 Score=58.38 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=33.9
Q ss_pred HHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 626 LRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 626 l~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+....++|...+.||+|+||.||++....+|+.||+|.+..
T Consensus 38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05621 38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK 78 (370)
T ss_pred cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 33445678788899999999999999877779999999953
No 106
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.63 E-value=0.023 Score=59.26 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=32.5
Q ss_pred hhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..++|...+.||+|+||.||++.-...|+.||||++..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK 78 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence 45568888999999999999999876679999999963
No 107
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=94.62 E-value=0.035 Score=56.93 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=30.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|.....|+.||||.++.
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~ 53 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKK 53 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 346667899999999999999976679999999964
No 108
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.40 E-value=0.017 Score=32.04 Aligned_cols=12 Identities=67% Similarity=0.863 Sum_probs=6.1
Q ss_pred CCEEECCCCccc
Q 038612 493 LKVLDLSRNNLS 504 (678)
Q Consensus 493 L~~L~ls~n~l~ 504 (678)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555554
No 109
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.39 E-value=0.03 Score=56.40 Aligned_cols=37 Identities=38% Similarity=0.583 Sum_probs=30.2
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..|...+.||+|+||.||+|+-...|+.||||.+...
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~ 55 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQ 55 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecC
Confidence 3466678899999999999997555699999999643
No 110
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.34 E-value=0.006 Score=66.34 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=18.5
Q ss_pred CCCCcEEEcccCC-CCcccChhHhhccccCcEEEccCcce
Q 038612 272 CSKLEWLELRKNQ-FGGNLPHFIANLSKTMTIIDMGENKL 310 (678)
Q Consensus 272 ~~~L~~L~L~~n~-~~~~~p~~~~~~~~~L~~L~L~~n~l 310 (678)
|++|++|.+.++. +++..-..+....+.|+.|+++.|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5555555555444 33333333333333366666665543
No 111
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=94.31 E-value=0.024 Score=59.65 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=27.4
Q ss_pred ccccceeccCCCceEEEEEECC-----CCeEEEEEEeecc
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINLN 667 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~~ 667 (678)
+.-.+.||+|+||.||+|++.+ .++.||||+++..
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKST 78 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCC
Confidence 4456789999999999999742 2258999999643
No 112
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=94.25 E-value=0.046 Score=54.54 Aligned_cols=46 Identities=33% Similarity=0.695 Sum_probs=38.6
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++.++..+.+.|.-...||+|+||.||+|.....++.||+|....
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~ 51 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDV 51 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 4566777777888888999999999999999866669999999854
No 113
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=94.20 E-value=0.055 Score=55.82 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||+|.-...++.||||++..
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 50 (343)
T cd07878 15 ERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSR 50 (343)
T ss_pred hhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCc
Confidence 456667889999999999998766668999999964
No 114
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=94.01 E-value=0.023 Score=58.82 Aligned_cols=41 Identities=32% Similarity=0.490 Sum_probs=31.8
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccCcccC
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
.+.||+|-||.||.|.|. +...||||.++.+++. .++|.+|
T Consensus 211 ~~~LG~G~FG~V~~g~~~-~~~~vavk~ik~~~m~-~~~f~~E 251 (468)
T KOG0197|consen 211 IRELGSGQFGEVWLGKWN-GSTKVAVKTIKEGSMS-PEAFLRE 251 (468)
T ss_pred HHHhcCCccceEEEEEEc-CCCcccceEEeccccC-hhHHHHH
Confidence 466999999999999996 4369999999887553 3456543
No 115
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=93.95 E-value=0.033 Score=56.14 Aligned_cols=32 Identities=41% Similarity=0.482 Sum_probs=26.6
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
...||+|+||.||+|.....|+.||||.++..
T Consensus 26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~ 57 (297)
T cd06659 26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLR 57 (297)
T ss_pred hhhcCCCCceeEEEEEEcCCCCEEEEEEEEec
Confidence 34699999999999987655699999999643
No 116
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=93.79 E-value=0.04 Score=58.08 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=26.6
Q ss_pred cccccceeccCCCceEEEEEECC-----CCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~ 666 (678)
.|.-.++||+|+||.||+|+... .+..||||+++.
T Consensus 38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~ 77 (400)
T cd05105 38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKP 77 (400)
T ss_pred ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCC
Confidence 45556789999999999998621 124799999964
No 117
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=93.78 E-value=0.044 Score=55.77 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=29.6
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|...+.||+|+||.||+|+..++|+.||||++..
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~ 60 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSY 60 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 6667889999999999999866679999999964
No 118
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=93.74 E-value=0.036 Score=55.67 Aligned_cols=31 Identities=42% Similarity=0.581 Sum_probs=26.4
Q ss_pred ceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 637 NMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..||+|+||.||+|.....|+.||||++...
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~ 56 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLR 56 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEeccc
Confidence 5699999999999998656699999998543
No 119
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=93.74 E-value=0.044 Score=55.09 Aligned_cols=35 Identities=40% Similarity=0.609 Sum_probs=28.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|.-..++..||+|.+..
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~ 54 (293)
T cd06647 20 KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNL 54 (293)
T ss_pred hceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecc
Confidence 45556789999999999998755568999999854
No 120
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=93.68 E-value=0.055 Score=57.41 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=27.6
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.||.|++|.||||++.+| +.||||..+.+
T Consensus 122 ~~plasaSigQVh~A~l~~G-~~VaVKv~rp~ 152 (437)
T TIGR01982 122 EKPLAAASIAQVHRARLVDG-KEVAVKVLRPG 152 (437)
T ss_pred CcceeeeehhheEEEEecCC-CEEEEEeeCCC
Confidence 46899999999999999875 99999999755
No 121
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=93.60 E-value=0.053 Score=54.57 Aligned_cols=35 Identities=40% Similarity=0.606 Sum_probs=29.4
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+|...+.||.|+||.||+|+-...|+.||||.+..
T Consensus 20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~ 54 (296)
T cd06655 20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINL 54 (296)
T ss_pred eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 46667889999999999998755569999999964
No 122
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=93.59 E-value=0.018 Score=48.64 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=28.5
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
|+ .+-||.|+.|.||+|+|.+| +.||||..+.+
T Consensus 14 fd-~~PlasASiaQVh~a~l~~g-~~VaVKV~rP~ 46 (119)
T PF03109_consen 14 FD-PEPLASASIAQVHRARLKDG-EEVAVKVQRPG 46 (119)
T ss_pred CC-cchhhheehhhheeeeeccc-chhhhhhcchH
Confidence 44 46799999999999999875 99999999765
No 123
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=93.52 E-value=0.036 Score=57.14 Aligned_cols=31 Identities=45% Similarity=0.756 Sum_probs=27.7
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++++|.|-||+||-|.-...|+.||||.+..
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdK 599 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDK 599 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeec
Confidence 5799999999999999877789999999953
No 124
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=93.52 E-value=0.056 Score=54.40 Aligned_cols=36 Identities=33% Similarity=0.580 Sum_probs=29.4
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|+-...|+.||||.+...
T Consensus 21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~ 56 (296)
T cd06654 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ 56 (296)
T ss_pred ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecC
Confidence 455567899999999999987555689999999643
No 125
>smart00090 RIO RIO-like kinase.
Probab=93.46 E-value=0.076 Score=51.24 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=26.9
Q ss_pred cccceeccCCCceEEEEE--ECCCCeEEEEEEeecc
Q 038612 634 STSNMIGQGSFGIVYKGI--FSENGMVVAVKVINLN 667 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~--l~~~g~~vAvK~l~~~ 667 (678)
.-...||+|+||.||+|+ ..+ |+.||||..+..
T Consensus 31 ~i~~~Lg~G~~g~Vy~a~~~~~~-g~~vaiK~~~~~ 65 (237)
T smart00090 31 AIGGCISTGKEANVYHALDFDGS-GKERAVKIYRTG 65 (237)
T ss_pred HhCCeeccCcceeEEEEEecCCC-CcEEEEEEEEcC
Confidence 335679999999999998 544 599999999653
No 126
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=93.46 E-value=0.083 Score=54.47 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=30.9
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.|...+.||+|+||.||+|+....|..||||++..
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 50 (343)
T cd07880 14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYR 50 (343)
T ss_pred ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecc
Confidence 4567777899999999999998765569999999853
No 127
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=93.45 E-value=0.037 Score=55.56 Aligned_cols=31 Identities=42% Similarity=0.501 Sum_probs=26.3
Q ss_pred ceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 637 NMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..||+|+||.||++.....|..||||++...
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~ 58 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLR 58 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecc
Confidence 5699999999999988656689999998643
No 128
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.026 Score=64.18 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=29.2
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
.++|.+-.++|+||||.|||..=.=+|+..||||+.
T Consensus 478 ~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIp 513 (1351)
T KOG1035|consen 478 LNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIP 513 (1351)
T ss_pred hhhhHHHHHhcCCCCceEEEEeecccchhhhhhhcc
Confidence 346777789999999999999643335999999995
No 129
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=93.38 E-value=0.025 Score=53.27 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=32.2
Q ss_pred ceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 619 ~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..|+.++++. ...||.|.||+|+|-.-..-|+..||||++..
T Consensus 59 ~~F~~~~Lqd-------lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~ 100 (361)
T KOG1006|consen 59 HTFTSDNLQD-------LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSN 100 (361)
T ss_pred cccccchHHH-------HHHhcCCcchhhhhhhcCccCcEEEEEEeeec
Confidence 3455555543 35699999999999988666799999999754
No 130
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=93.28 E-value=0.044 Score=54.77 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=32.9
Q ss_pred HhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++++|...+.+|+|+||.||+|.....++.||+|++...
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~ 55 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLR 55 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecC
Confidence 3456677778899999999999999745589999999654
No 131
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.26 E-value=0.086 Score=54.77 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=31.2
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.|...+.||+|+||.||+|.-...|+.||||++..
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 56 (359)
T cd07876 20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSR 56 (359)
T ss_pred hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecc
Confidence 3567778899999999999998766669999999953
No 132
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.22 E-value=0.084 Score=53.43 Aligned_cols=35 Identities=37% Similarity=0.499 Sum_probs=29.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|...+.||+|+||.||+|+...+|+.||+|++..
T Consensus 16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~ 50 (307)
T cd06607 16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSY 50 (307)
T ss_pred hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 36667889999999999999876679999999864
No 133
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=93.19 E-value=0.06 Score=53.84 Aligned_cols=34 Identities=38% Similarity=0.451 Sum_probs=28.1
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+..-+.||+|++|.||+|+...+++.||+|++..
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~ 54 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDL 54 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEEEEec
Confidence 4445789999999999999755568999999864
No 134
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=93.14 E-value=0.09 Score=54.19 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=30.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|+....|+.||||++..
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~ 50 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSR 50 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecC
Confidence 356677899999999999999765569999999964
No 135
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=93.07 E-value=0.098 Score=53.86 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=28.3
Q ss_pred cccccceeccCCCceEEEEEECCCC-eEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENG-MVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g-~~vAvK~l~~ 666 (678)
+|.-.+.||+|+||.||+|.....+ ..||||++..
T Consensus 31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~ 66 (340)
T PTZ00426 31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK 66 (340)
T ss_pred hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEH
Confidence 4666788999999999999875433 6899999953
No 136
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=93.00 E-value=0.12 Score=52.06 Aligned_cols=36 Identities=36% Similarity=0.563 Sum_probs=30.2
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+|.-.+.||+|+||.||+|+..+.|+.||||+++..
T Consensus 16 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~ 51 (296)
T cd06618 16 DLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRT 51 (296)
T ss_pred hheeeeEeeccCCeEEEEEEECCCCeEEEEEEEecc
Confidence 355568899999999999999765699999999643
No 137
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=92.99 E-value=0.096 Score=56.56 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.9
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|++ +-+|.|++|.||+|++.+.|+.||||..+.+
T Consensus 121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 4655 7899999999999999874599999999754
No 138
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=92.91 E-value=0.1 Score=54.03 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=30.9
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|...+.||+|+||.||++.-...++.||||++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 52 (355)
T cd07874 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR 52 (355)
T ss_pred hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCC
Confidence 4567778899999999999998655568999999964
No 139
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=92.88 E-value=0.082 Score=55.26 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=27.3
Q ss_pred cccccceeccCCCceEEEEEEC-----CCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFS-----ENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~-----~~g~~vAvK~l~~ 666 (678)
+|.-.+.||+|+||.||+|+.. +.+..||||+++.
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~ 78 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKA 78 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEEeccC
Confidence 4666789999999999999852 1225899999964
No 140
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.85 E-value=0.00049 Score=72.87 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=39.7
Q ss_pred CCEEECCCCCCccc----cChhhcCCccCcEEeccCCCCccCCC----ccCCCC-CCCCEEEccccccccc----Ccccc
Q 038612 100 LEKLSIAVNHLRGQ----LPASIGNLSALQAFDVGENTLHGRIP----ESLGQL-RSLKFLNVEENNFSGM----VPVSI 166 (678)
Q Consensus 100 L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~~----~~~~~ 166 (678)
+..|+|.+|.+... +...+.....|..|++++|.+.+.-- ..+... ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655432 22334455566666666665542111 112222 3455555555555432 23334
Q ss_pred cCCCCCcEEECCCCCC
Q 038612 167 YNISSLEMIFLPANRL 182 (678)
Q Consensus 167 ~~l~~L~~L~l~~n~~ 182 (678)
....+++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455555555555554
No 141
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=92.85 E-value=0.041 Score=58.92 Aligned_cols=42 Identities=33% Similarity=0.677 Sum_probs=30.8
Q ss_pred ceeccCCCceEEEEEECC-CC--eEEEEEEeeccCCC-cccCcccC
Q 038612 637 NMIGQGSFGIVYKGIFSE-NG--MVVAVKVINLNQKG-GFRSFVAE 678 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~-~g--~~vAvK~l~~~~~~-~~~~F~~E 678 (678)
++||+|.||.|.+|.|.. +| ..||||.++.+... ...+|.+|
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrE 161 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLRE 161 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHH
Confidence 569999999999999932 22 37899999876543 34457655
No 142
>PHA03209 serine/threonine kinase US3; Provisional
Probab=92.65 E-value=0.12 Score=53.53 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=30.6
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
..+|...+.||+|+||.||+|.....++.||+|...
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~ 100 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ 100 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence 446888899999999999999997666899999754
No 143
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=92.57 E-value=0.035 Score=59.58 Aligned_cols=34 Identities=41% Similarity=0.719 Sum_probs=27.7
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.....+|+||||.||+|+=...|+.||||..+.
T Consensus 15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~ 48 (732)
T KOG4250|consen 15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNK 48 (732)
T ss_pred eeehhhhcCCccceeeeecccccccchhHHhhhh
Confidence 4445779999999999999544469999999964
No 144
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=92.57 E-value=0.05 Score=57.46 Aligned_cols=45 Identities=36% Similarity=0.707 Sum_probs=31.5
Q ss_pred cccceeccCCCceEEEEEECCC--C--eEEEEEEeeccCC-CcccCcccC
Q 038612 634 STSNMIGQGSFGIVYKGIFSEN--G--MVVAVKVINLNQK-GGFRSFVAE 678 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~--g--~~vAvK~l~~~~~-~~~~~F~~E 678 (678)
...+.||+|-||.||+|++.+. | ..||||.-+.+.. ...+.|+.|
T Consensus 392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqE 441 (974)
T KOG4257|consen 392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQE 441 (974)
T ss_pred cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHH
Confidence 3467899999999999998432 2 4799999986432 223446544
No 145
>PHA03211 serine/threonine kinase US3; Provisional
Probab=92.57 E-value=0.12 Score=55.34 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=28.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEe
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l 664 (678)
+|.-...||+|+||.||+|+....++.||||..
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~ 202 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAG 202 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCCCCEEEEecc
Confidence 466778899999999999999777789999975
No 146
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=92.54 E-value=0.13 Score=53.63 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=30.9
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|...+.||+|+||.||+|.-...++.||||++..
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 59 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence 3567778899999999999998755568999999964
No 147
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=92.47 E-value=0.074 Score=53.72 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=29.0
Q ss_pred hcccccceeccCCCceEEEEEE-----CCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l-----~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|.. ...+..||||+++..
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 76 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPT 76 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCcc
Confidence 4578889999999999999975 222358999998643
No 148
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.45 E-value=0.0035 Score=57.56 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=52.9
Q ss_pred CCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcE
Q 038612 95 SSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEM 174 (678)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 174 (678)
......+.||++.|++. .+-..|+.++.|..||++.|.+. -.|..++.+..++.+++..|..+ ..|.+++..+++++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34455556666666554 22334555666666677766665 55666666666666666666665 56666666667666
Q ss_pred EECCCCCCC
Q 038612 175 IFLPANRLE 183 (678)
Q Consensus 175 L~l~~n~~~ 183 (678)
+++..+.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666543
No 149
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=92.20 E-value=0.08 Score=52.41 Aligned_cols=36 Identities=33% Similarity=0.628 Sum_probs=31.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.--++||+|+||+||...=.+.|+..|.|+|+.
T Consensus 25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K 60 (357)
T KOG0598|consen 25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKK 60 (357)
T ss_pred hheeeeeeeeccCCceEEEEEEcccCceeehhhhhh
Confidence 458888999999999999998777789999999964
No 150
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=92.18 E-value=0.15 Score=53.83 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=28.9
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+...++||+|||+.||+++--+.|+.||||++..
T Consensus 19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk 53 (592)
T KOG0575|consen 19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPK 53 (592)
T ss_pred eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeeh
Confidence 35667899999999999998734459999999954
No 151
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=92.07 E-value=0.14 Score=52.82 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=31.7
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.....||+|+||.||+|....+|+.||||++..
T Consensus 14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~ 50 (343)
T cd07851 14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSR 50 (343)
T ss_pred cCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccc
Confidence 4567778899999999999999976679999999854
No 152
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=91.74 E-value=0.17 Score=51.46 Aligned_cols=34 Identities=44% Similarity=0.580 Sum_probs=28.4
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|...+.||+|+||+||+|+....|+.||||++..
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~ 56 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSY 56 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEec
Confidence 4445679999999999999876679999999964
No 153
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=91.41 E-value=0.05 Score=51.78 Aligned_cols=32 Identities=44% Similarity=0.662 Sum_probs=26.1
Q ss_pred ccceeccCCCceEEEEE-ECCCCeEEEEEEeecc
Q 038612 635 TSNMIGQGSFGIVYKGI-FSENGMVVAVKVINLN 667 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~-l~~~g~~vAvK~l~~~ 667 (678)
-.+.||+|.||+|||+. +.+ |..||.|.++-+
T Consensus 23 Il~~IG~GsFg~vykv~~~~~-g~l~a~K~i~f~ 55 (375)
T KOG0591|consen 23 ILKKIGRGSFGEVYKVQCLLD-GKLVALKKIQFG 55 (375)
T ss_pred HHHHHcCCcchheEEeeeccC-cchhhhhhcchh
Confidence 34679999999999995 555 499999999754
No 154
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.86 E-value=0.002 Score=68.31 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=24.0
Q ss_pred ccccccccccceeeecc----CcccCCCcccceeeccCccccc
Q 038612 322 VNLNLFSLHLNQLIGTI----PHVIGSLKNLQLLYLYGNSLEG 360 (678)
Q Consensus 322 ~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~ 360 (678)
..++.++++.|.++..- ...+..++.++++.+++|.+.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 45566666666665432 2334456677788887777654
No 155
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=90.84 E-value=0.13 Score=50.71 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=28.5
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
.+...+.||+|+||.|.+++-...|+.||||++.
T Consensus 23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~ 56 (359)
T KOG0660|consen 23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKIL 56 (359)
T ss_pred eecccccccCcceeeEEEEEEcCCCCEeehhhhh
Confidence 3444577999999999999886667999999995
No 156
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=0.031 Score=50.58 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=50.7
Q ss_pred CCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCcc-CChhhhcCCCCCCEEEcccCc-CCCCCCccCcCCCCCcE
Q 038612 146 RSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGI-LPLNIGFNLPNLKSLIVAQNN-LTGPIPHSLSNASNLIE 223 (678)
Q Consensus 146 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 223 (678)
..++.+|-+++.|...--+.+.+++.++.|.+.+|.-.+. --..+....++|+.|++++|. ||..--..+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3466777777777666666677777777777777653211 112223345778888887663 55443445666777777
Q ss_pred EeccC
Q 038612 224 LNLGQ 228 (678)
Q Consensus 224 L~L~~ 228 (678)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 157
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=90.75 E-value=0.24 Score=51.23 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=30.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
+.|...+.||+|+||.||+|.-...|+.||||++.
T Consensus 16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~ 50 (353)
T cd07850 16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLS 50 (353)
T ss_pred cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecC
Confidence 56777889999999999999876566999999985
No 158
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=90.74 E-value=0.19 Score=49.91 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=33.6
Q ss_pred ceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 619 ~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..++..|++.. ++||+|..|+|||+.-...|+..|.|.++.
T Consensus 74 ~~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~ 114 (364)
T KOG0581|consen 74 NGISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILL 114 (364)
T ss_pred cccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecc
Confidence 34667777653 789999999999999977779999999954
No 159
>PHA03212 serine/threonine kinase US3; Provisional
Probab=90.66 E-value=0.24 Score=52.04 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
++|.-.+.||+|+||.||++.-...++.||||+.+
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~ 126 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ 126 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh
Confidence 45777889999999999999876666899999874
No 160
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=90.60 E-value=0.2 Score=57.25 Aligned_cols=35 Identities=43% Similarity=0.667 Sum_probs=29.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..|.-++.||+|+||.||+|+=.+ |+.||+|.=+.
T Consensus 698 ~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P 732 (974)
T KOG1166|consen 698 EKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKP 732 (974)
T ss_pred eeEEEEeeeccccceEEEEeecCC-CcEEEEEeecC
Confidence 457778899999999999999876 59999998653
No 161
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=90.48 E-value=0.21 Score=50.59 Aligned_cols=34 Identities=44% Similarity=0.580 Sum_probs=28.8
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|...+.||+|+||.||+|....+|+.||||++..
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~ 50 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY 50 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEec
Confidence 5556779999999999999866678999999863
No 162
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=90.47 E-value=0.033 Score=53.20 Aligned_cols=34 Identities=38% Similarity=0.680 Sum_probs=27.9
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|+--..+|+|+||.|||+.-...|++||||+.-.
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV 68 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV 68 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc
Confidence 4445568999999999998766679999999843
No 163
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=90.34 E-value=0.29 Score=52.31 Aligned_cols=32 Identities=38% Similarity=0.613 Sum_probs=27.4
Q ss_pred ccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 635 TSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
-.++||+|.||.|-|+.=...++.||||.++.
T Consensus 190 V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN 221 (586)
T KOG0667|consen 190 VLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKN 221 (586)
T ss_pred EEEEecccccceeEEEEecCCCcEEEEEeecc
Confidence 36789999999999998765569999999964
No 164
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.28 E-value=0.19 Score=25.83 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=3.3
Q ss_pred CCEEEccccc
Q 038612 148 LKFLNVEENN 157 (678)
Q Consensus 148 L~~L~L~~n~ 157 (678)
|++|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444443
No 165
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.18 E-value=0.0051 Score=56.47 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=30.8
Q ss_pred ccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcc
Q 038612 166 IYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHF 231 (678)
Q Consensus 166 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 231 (678)
|.-++.|..|+++.|++. ..|.++. ....++++++..|..+ ..|.++++.++++++++-.+.+
T Consensus 61 ~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 333444444444444443 3444444 4444555555555444 3455555555666555555544
No 166
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=90.16 E-value=0.26 Score=49.16 Aligned_cols=36 Identities=36% Similarity=0.694 Sum_probs=29.9
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++...+.||+|.||.||.+...+.|+..|||.....
T Consensus 18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~ 53 (313)
T KOG0198|consen 18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELE 53 (313)
T ss_pred hhhhhccccCccceEEEEEEecCCCcceeeeeeecc
Confidence 355568899999999999999765699999999643
No 167
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=89.53 E-value=0.18 Score=50.86 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.3
Q ss_pred hcccccceeccCCCceEEEEEEC-------CCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS-------ENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~-------~~g~~vAvK~l~~ 666 (678)
.+|...+.||+|+||.||+|... ..+..||||..+.
T Consensus 15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~ 57 (304)
T cd05101 15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKD 57 (304)
T ss_pred HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccc
Confidence 34666788999999999999751 1235899999864
No 168
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=89.15 E-value=0.28 Score=50.90 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=28.0
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.||+|.||.||+++-...|+.+|+|.+...
T Consensus 40 ~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~ 71 (382)
T KOG0032|consen 40 GRELGRGQFGVVYLCREKSTGKEVACKVIPKR 71 (382)
T ss_pred hhhhCCCCceEEEEEEecCCCceeEEEEeehh
Confidence 47799999999999999876799999999643
No 169
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=89.10 E-value=0.19 Score=52.87 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=33.7
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeeccC-CCcccCcccC
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ-KGGFRSFVAE 678 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~-~~~~~~F~~E 678 (678)
.+.||+|-||+|---+... +..||||.++.+. +..+++|.+|
T Consensus 543 ~ekiGeGqFGEVhLCeveg-~lkVAVK~Lr~~a~~~~r~~F~kE 585 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEG-PLKVAVKILRPDATKNARNDFLKE 585 (807)
T ss_pred hhhhcCcccceeEEEEecC-ceEEEEeecCcccchhHHHHHHHH
Confidence 4569999999999999964 5999999998764 4445778765
No 170
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=88.70 E-value=0.42 Score=44.70 Aligned_cols=44 Identities=34% Similarity=0.483 Sum_probs=31.7
Q ss_pred eHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 622 s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.+++..+ +.+.--+.||.|+||.+|-|.--..|+.||||.=+.
T Consensus 7 s~~~~iv~-gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~ 50 (341)
T KOG1163|consen 7 SLEELIVG-GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESS 50 (341)
T ss_pred chhhheec-cceEEEEeecCCchhheeeeeeccCCceEEEEeecc
Confidence 33444443 235556889999999999997644569999998754
No 171
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=88.67 E-value=0.22 Score=54.99 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.7
Q ss_pred cccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 634 STSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.-+++|.+|||+.||-+....+|..+|+||+-..
T Consensus 40 ~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~ 73 (738)
T KOG1989|consen 40 TVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN 73 (738)
T ss_pred EEEEEEccCCcEEEEEEEecCCCceeeeeeeecC
Confidence 3468899999999999999766699999999543
No 172
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=88.57 E-value=0.59 Score=51.43 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEe
Q 038612 623 YAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664 (678)
Q Consensus 623 ~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l 664 (678)
+.........+...+.||+|+||.||+|.+.+ ..+++|+.
T Consensus 325 ~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~--~~~v~k~~ 364 (535)
T PRK09605 325 WIKEEEVKRRKIPDHLIGKGAEADIKKGEYLG--RDAVIKER 364 (535)
T ss_pred eccccccccccCccceeccCCcEEEEEEeecC--ccceeEEE
Confidence 33334444555678999999999999999963 44555543
No 173
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=88.47 E-value=0.18 Score=50.88 Aligned_cols=42 Identities=36% Similarity=0.452 Sum_probs=33.4
Q ss_pred HHHhhhcccccceeccCCCceEEEEEECC---CCeEEEEEEeecc
Q 038612 626 LRKATNEFSTSNMIGQGSFGIVYKGIFSE---NGMVVAVKVINLN 667 (678)
Q Consensus 626 l~~at~~f~~~~~iG~G~~G~Vykg~l~~---~g~~vAvK~l~~~ 667 (678)
+....+.|...+.||+|.|++||+|++.. ..+.||+|.+...
T Consensus 31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t 75 (418)
T KOG1167|consen 31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT 75 (418)
T ss_pred hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc
Confidence 33445567888999999999999999854 4579999999643
No 174
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=87.82 E-value=0.85 Score=44.97 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=30.3
Q ss_pred HHHHhhhcccccce--eccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 625 ALRKATNEFSTSNM--IGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 625 el~~at~~f~~~~~--iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+...-.++|.-.+. +|+|+||.||+++-..+|+.+|+|..+.
T Consensus 8 ~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 8 ELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred HHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 33333445444444 4999999999999866678999999864
No 175
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.61 E-value=0.6 Score=26.97 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=8.9
Q ss_pred CCCcEEECCCCCCCccCChh
Q 038612 170 SSLEMIFLPANRLEGILPLN 189 (678)
Q Consensus 170 ~~L~~L~l~~n~~~~~~p~~ 189 (678)
++|++|+|++|++. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34455555555544 33443
No 176
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.61 E-value=0.6 Score=26.97 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=8.9
Q ss_pred CCCcEEECCCCCCCccCChh
Q 038612 170 SSLEMIFLPANRLEGILPLN 189 (678)
Q Consensus 170 ~~L~~L~l~~n~~~~~~p~~ 189 (678)
++|++|+|++|++. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34455555555544 33443
No 177
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=87.46 E-value=0.29 Score=49.42 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=27.0
Q ss_pred cccccceeccCCCceEEEEEECC-------CCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSE-------NGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~-------~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|...+ .+..||+|.++.
T Consensus 19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~ 60 (307)
T cd05098 19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKS 60 (307)
T ss_pred HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccC
Confidence 46667889999999999997521 125799999964
No 178
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=86.71 E-value=0.32 Score=44.37 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=28.4
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+++.....||+|+||.|-|-.....|+..|||++.+
T Consensus 45 ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~ 81 (282)
T KOG0984|consen 45 ADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRA 81 (282)
T ss_pred hhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehh
Confidence 3445555679999999987776655569999999965
No 179
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=85.97 E-value=0.61 Score=54.00 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.7
Q ss_pred hhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..+.|.-...||+|+||.||++.....+..||+|.+..
T Consensus 11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~ 48 (1021)
T PTZ00266 11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISY 48 (1021)
T ss_pred ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEec
Confidence 34567777899999999999999876678999999864
No 180
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=85.78 E-value=0.42 Score=51.78 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=26.7
Q ss_pred ccccceeccCCCceEEEEEECCC-CeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSEN-GMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~-g~~vAvK~l~~ 666 (678)
|.-.+.||+|+||.||+|.-..+ ++.||+|.+..
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~ 103 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVML 103 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEccc
Confidence 55578899999999999976433 47889997743
No 181
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.32 E-value=0.69 Score=26.71 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=7.4
Q ss_pred CCCCEEECCCCccc
Q 038612 491 KSLKVLDLSRNNLS 504 (678)
Q Consensus 491 ~~L~~L~ls~n~l~ 504 (678)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 182
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.32 E-value=0.69 Score=26.71 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=7.4
Q ss_pred CCCCEEECCCCccc
Q 038612 491 KSLKVLDLSRNNLS 504 (678)
Q Consensus 491 ~~L~~L~ls~n~l~ 504 (678)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 183
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.28 E-value=0.13 Score=46.66 Aligned_cols=81 Identities=22% Similarity=0.099 Sum_probs=54.4
Q ss_pred cCCeeecccCcccccCCccccCCCCCCEEECcCCccccccC-ccc-cCCCCCCEEECCCC-cccccCCccCCCCCCCCEE
Q 038612 444 NLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIP-LSL-ISLKSLKVLDLSRN-NLSGKIPEYLENLPFLQYL 520 (678)
Q Consensus 444 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L 520 (678)
.++.+|-++..|..+.-+.+..+++++.|.+.+|.-.+..- ..+ +..++|+.|+|++| +|+..--.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46777888887777777777788888888888886432110 011 13478888888877 5665545566777788877
Q ss_pred eCCc
Q 038612 521 DLSY 524 (678)
Q Consensus 521 ~l~~ 524 (678)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 184
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=85.11 E-value=0.19 Score=51.26 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=31.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|..-++||+||||.||--...+.|.+.|-|+|..
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~K 220 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDK 220 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHH
Confidence 458889999999999999998888889999999843
No 185
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=84.76 E-value=0.27 Score=54.08 Aligned_cols=32 Identities=41% Similarity=0.744 Sum_probs=27.0
Q ss_pred cccccceeccCCCc-eEEEEEECCCCeEEEEEEee
Q 038612 632 EFSTSNMIGQGSFG-IVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 632 ~f~~~~~iG~G~~G-~Vykg~l~~~g~~vAvK~l~ 665 (678)
-|+.++++|.|.-| .||+|++. |+.|||||+-
T Consensus 510 ~~~~~eilG~Gs~Gt~Vf~G~ye--~R~VAVKrll 542 (903)
T KOG1027|consen 510 FFSPKEILGYGSNGTVVFRGVYE--GREVAVKRLL 542 (903)
T ss_pred eeccHHHcccCCCCcEEEEEeeC--CceehHHHHh
Confidence 47778899999886 58999995 5999999994
No 186
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=84.50 E-value=1 Score=46.56 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.3
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|.|.-...||+|.||.|-.|.=...|+.||||.+..
T Consensus 96 lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K 132 (576)
T KOG0585|consen 96 LNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPK 132 (576)
T ss_pred hhheehhhhhcCCccceEEEEeecCCCcEEEEEeech
Confidence 4556667789999999999997655569999999954
No 187
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.48 E-value=1 Score=46.70 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=28.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.+.-.+.||+|+||+||.|.-...|+.||||.+..
T Consensus 17 g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 17 GKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred CceeeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence 345557889999999999997655569999996643
No 188
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=84.45 E-value=2.2 Score=27.51 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=2.9
Q ss_pred EEeehhh
Q 038612 578 KVIIPVI 584 (678)
Q Consensus 578 ~i~i~~~ 584 (678)
+++++++
T Consensus 16 ~VvVPV~ 22 (40)
T PF08693_consen 16 GVVVPVG 22 (40)
T ss_pred EEEechH
Confidence 3444443
No 189
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=84.37 E-value=0.61 Score=50.13 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=27.7
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+-|+.++-|.||+|+|++| +.||||..+.+
T Consensus 130 ~~PiAsASIaQVH~A~L~sG-~~VAVKVqrPg 160 (517)
T COG0661 130 PEPIASASIAQVHRAVLKSG-EEVAVKVQRPG 160 (517)
T ss_pred CCchhhhhHhhheeEEecCC-CEEEEEecCCC
Confidence 36789999999999999875 99999999765
No 190
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=84.20 E-value=0.41 Score=50.34 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=31.2
Q ss_pred ceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 619 ~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..+.|++|.+ -.-+|.|+-|.||.|.|. ++.||||+.+.
T Consensus 119 WeiPFe~IsE-------LeWlGSGaQGAVF~Grl~--netVAVKKV~e 157 (904)
T KOG4721|consen 119 WEIPFEEISE-------LEWLGSGAQGAVFLGRLH--NETVAVKKVRE 157 (904)
T ss_pred ccCCHHHhhh-------hhhhccCcccceeeeecc--CceehhHHHhh
Confidence 4467777643 366999999999999997 48999999853
No 191
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.95 E-value=1.1 Score=45.28 Aligned_cols=31 Identities=39% Similarity=0.620 Sum_probs=27.0
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.+|+|+||.|-.|.=...|+.||||.++.
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~k 207 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINK 207 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeeeh
Confidence 6789999999999997766679999999964
No 192
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.25 E-value=0.43 Score=26.99 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=7.9
Q ss_pred CCCcEEEcccCCCCccc
Q 038612 273 SKLEWLELRKNQFGGNL 289 (678)
Q Consensus 273 ~~L~~L~L~~n~~~~~~ 289 (678)
++|++|+|++|.+++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 44555566555554443
No 193
>PHA03207 serine/threonine kinase US3; Provisional
Probab=82.89 E-value=1.4 Score=46.42 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=27.4
Q ss_pred cccccceeccCCCceEEEEEECCC--CeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSEN--GMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~--g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+++..+. +..||||.+..
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~ 129 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG 129 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence 466678899999999999986432 36899999854
No 194
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=82.48 E-value=0.67 Score=48.58 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=30.2
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
-++|.-.++||+|+|.+||+|+=.+.+...|||++.
T Consensus 72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred hhhcchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence 345666788999999999999876666899999995
No 195
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.00 E-value=0.61 Score=46.99 Aligned_cols=47 Identities=28% Similarity=0.324 Sum_probs=35.4
Q ss_pred eeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 620 FVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 620 ~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..+-.+..+|| +|+--.+||+|+||.|.-|+=....+..|||.|+.+
T Consensus 339 ~~~~~d~i~~t-DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKD 385 (683)
T KOG0696|consen 339 NSSKRDRIKAT-DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKD 385 (683)
T ss_pred CCCcccceeec-ccceEEEeccCccceeeeecccCcchhhhhhhhccc
Confidence 34444545554 488889999999999999987644468899999754
No 196
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=81.30 E-value=1.1 Score=44.10 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=25.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEe
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l 664 (678)
+|.-.+.||+|.||..+-|+=--.+++||||-=
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE 61 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE 61 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEec
Confidence 355578899999999999963223499999965
No 197
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.93 E-value=1 Score=42.90 Aligned_cols=36 Identities=11% Similarity=-0.161 Sum_probs=29.7
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.+...+++|+||||.||...- + +..+|||.++..
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~-~~~~iiKvf~~~ 65 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-D-YGKYILKVFAPK 65 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-C-CCcEEEEEechh
Confidence 56788899999999999999665 3 468999999643
No 198
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=79.93 E-value=1.4 Score=48.71 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=24.1
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEE
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIF 652 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l 652 (678)
+-.+|.+.+.. ....+.+|+|+||+||-|.-
T Consensus 985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence 44566666655 66788999999999999975
No 199
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=79.35 E-value=0.33 Score=49.23 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=24.3
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
-+++|+|||..||||.=-...+.||||.-+
T Consensus 468 LhLLGrGGFSEVyKAFDl~EqRYvAvKIHq 497 (775)
T KOG1151|consen 468 LHLLGRGGFSEVYKAFDLTEQRYVAVKIHQ 497 (775)
T ss_pred HHHhccccHHHHHHhcccchhheeeEeeeh
Confidence 567999999999999643345899999874
No 200
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=79.24 E-value=2.5 Score=43.09 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=26.8
Q ss_pred cccccceeccCCCceEEEEEECCCC-eEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENG-MVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g-~~vAvK~l~~ 666 (678)
.|.-...||+|+||.||++.=...+ ..+|+|.-..
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~ 54 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKK 54 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEe
Confidence 5667789999999999999864432 4678887754
No 201
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=78.63 E-value=0.66 Score=45.08 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=25.7
Q ss_pred ccccceeccCCCceEEEEEECCC--Ce--EEEEEEeecc
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSEN--GM--VVAVKVINLN 667 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~--g~--~vAvK~l~~~ 667 (678)
|.-...||+|.||.||||+=.++ .+ ..|+|+++..
T Consensus 26 ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~ 64 (438)
T KOG0666|consen 26 YEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE 64 (438)
T ss_pred hhccceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence 44456799999999999965322 13 6899999754
No 202
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=78.41 E-value=1.3 Score=49.54 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=26.7
Q ss_pred cccccceeccCCCceEEEEEEC---C----CCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFS---E----NGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~---~----~g~~vAvK~l~~~ 667 (678)
++.-.+.+|+|.||.|++|.+. . ....||||+++..
T Consensus 297 ~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~ 339 (609)
T KOG0200|consen 297 NLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKEN 339 (609)
T ss_pred hccccceeecccccceEeEEEeecccccccceEEEEEEecccc
Confidence 3333458999999999999862 1 1268999999754
No 203
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=76.97 E-value=3.9 Score=41.35 Aligned_cols=41 Identities=29% Similarity=0.545 Sum_probs=29.0
Q ss_pred HHHHhhhcccccceeccCCCceEEEEEECCCC-----eEEEEEEee
Q 038612 625 ALRKATNEFSTSNMIGQGSFGIVYKGIFSENG-----MVVAVKVIN 665 (678)
Q Consensus 625 el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g-----~~vAvK~l~ 665 (678)
|+......|.-..++-+|.||.||+|.|.+.. +.|-||.++
T Consensus 278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk 323 (563)
T KOG1024|consen 278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVK 323 (563)
T ss_pred hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHH
Confidence 44444445777788899999999999774332 467778774
No 204
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.79 E-value=2.6 Score=43.25 Aligned_cols=32 Identities=38% Similarity=0.547 Sum_probs=26.4
Q ss_pred ccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 635 TSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
-..+||.|.-+.||+|.-..-++.||||++.-
T Consensus 30 L~e~IG~G~sa~V~~A~c~p~~e~VAIK~inL 61 (516)
T KOG0582|consen 30 LQEVIGVGASAVVYLARCIPTNEVVAIKIINL 61 (516)
T ss_pred EEEEEeccceeEeeeeeecccCCEEEEEEeeh
Confidence 35679999999999997644559999999963
No 205
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=75.00 E-value=3 Score=37.55 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=26.3
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeeccCC
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQK 669 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~ 669 (678)
...||+|.+|.||.|.|. | ..||+|.-+.++.
T Consensus 27 ~~~L~KG~~s~Vyl~~~~-~-~~~a~Kvrr~ds~ 58 (201)
T COG2112 27 EKELAKGTTSVVYLGEWR-G-GEVALKVRRRDSP 58 (201)
T ss_pred hhhhhcccccEEEEeecc-C-ceEEEEEecCCcc
Confidence 467999999999999996 3 6899998866543
No 206
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.89 E-value=0.15 Score=47.83 Aligned_cols=29 Identities=41% Similarity=0.606 Sum_probs=25.3
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEe
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVI 664 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l 664 (678)
-..||+|.||+||||.-..+|+.||+|+.
T Consensus 22 ~~kigqGtfgeVFkAr~~n~~kkvalkkv 50 (376)
T KOG0669|consen 22 LAKIGQGTFGEVFKARSKNTGKKVALKKV 50 (376)
T ss_pred HHhcCCchHHHHHHHhhcCccchhHHHHH
Confidence 35699999999999998878889998876
No 207
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=74.51 E-value=4 Score=39.21 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=26.7
Q ss_pred ceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 637 NMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..+|.|..|.|.|......|..+|||.+...
T Consensus 98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt 128 (391)
T KOG0983|consen 98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRT 128 (391)
T ss_pred HhhcCCCccceEEEEEcccceEEEEEeeccc
Confidence 4589999999999998776699999999653
No 208
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.45 E-value=2.2 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.2
Q ss_pred ccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 635 TSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.-++|+|.||+||.|.=.+.+..+|||-+-.
T Consensus 579 ervVLGKGTYG~VYA~RD~~tqvrIaIKEIpe 610 (1226)
T KOG4279|consen 579 ERVVLGKGTYGTVYAARDMDTQVRIAIKEIPE 610 (1226)
T ss_pred ceEEeecCceeEEEeeccccceeEEEeeeccc
Confidence 45689999999999998655656899999943
No 209
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.96 E-value=1.4 Score=41.89 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=27.9
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEe
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVI 664 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l 664 (678)
..+++-||-|+||.|+..+=+.+|+.||.|++
T Consensus 55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~ 86 (449)
T KOG0664|consen 55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKM 86 (449)
T ss_pred CCCCCcccccceeEEEeccCCCCccchhHhhc
Confidence 34578899999999999988777899999998
No 210
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.97 E-value=0.55 Score=50.03 Aligned_cols=30 Identities=40% Similarity=0.708 Sum_probs=23.3
Q ss_pred eeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 638 MIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 638 ~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+|.|+||.||||+-.+.+-..|-|.+.-.
T Consensus 39 ELGDGAFGKVyKA~nket~~lAAaKvIetk 68 (1187)
T KOG0579|consen 39 ELGDGAFGKVYKAVNKETKLLAAAKVIETK 68 (1187)
T ss_pred hhcCccchhhhhhhcccchhhhhhhhhccc
Confidence 478999999999998665456678887543
No 211
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.00 E-value=13 Score=38.69 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=11.3
Q ss_pred cCcEEEccCcceeccCCcc
Q 038612 299 TMTIIDMGENKLSGTIPLG 317 (678)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~ 317 (678)
.+.+++++.|.....+|..
T Consensus 215 ~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred cccccccccCCCCccchhH
Confidence 3666677766665555543
No 212
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=66.67 E-value=4.6 Score=41.14 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.2
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|.--+.+|+|.-|+||-+.+.+.+...|+|++..
T Consensus 79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK 112 (459)
T KOG0610|consen 79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDK 112 (459)
T ss_pred HHHHHHcCCCCceeEEEEEecCCCceEEEEEecH
Confidence 4445779999999999999976557999999953
No 213
>PHA03210 serine/threonine kinase US3; Provisional
Probab=66.22 E-value=2.7 Score=45.79 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.1
Q ss_pred hhcccccceeccCCCceEEEEEEC
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFS 653 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~ 653 (678)
..+|.-.+.||+|+||+||++.+.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEe
Confidence 356777889999999999998764
No 214
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=65.89 E-value=1.7 Score=40.96 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=26.0
Q ss_pred ccccceeccCCCceEEEEE-ECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGI-FSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~-l~~~g~~vAvK~l~~ 666 (678)
|.-.+.+|+|||..||-+. ++++ ...|+|++.-
T Consensus 23 yri~~~LgeGGfsfv~LV~~~s~~-~~YAlKkI~c 56 (302)
T KOG2345|consen 23 YRIQRLLGEGGFSFVDLVKGLSTG-HLYALKKILC 56 (302)
T ss_pred EEEeeeecCCCceeeeeecccCcc-cchhhheeec
Confidence 3345679999999999887 5554 8899999953
No 215
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.85 E-value=5.7 Score=42.11 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=25.1
Q ss_pred ccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 635 TSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
.-..||+|+-|.||-+.=-..++.||||++.
T Consensus 277 ~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~ 307 (550)
T KOG0578|consen 277 DFKKIGQGATGGVYVARKISTKQEVAIKRMD 307 (550)
T ss_pred chhhhccccccceeeeeeccCCceEEEEEEE
Confidence 3456999999999999654445899999995
No 216
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.61 E-value=34 Score=35.78 Aligned_cols=60 Identities=27% Similarity=0.209 Sum_probs=35.5
Q ss_pred ccceeeccCccccccCCc---cccCCCCCcEEeccCCccCc----cCCCCCCCcCCCceEecCCCcc
Q 038612 347 NLQLLYLYGNSLEGNIPS---SLGNLTLLTKLALDFNNLQG----NIPSSLGSCQNLMELIVSHNKL 406 (678)
Q Consensus 347 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l 406 (678)
-+..+.++.+.+...... ....-+.+..|++++|.... .+|.....-..++....+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 366777777766532222 23445778889999887653 2344444445566666666654
No 217
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=64.45 E-value=1.9 Score=49.61 Aligned_cols=43 Identities=30% Similarity=0.440 Sum_probs=34.5
Q ss_pred HHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 624 AALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 624 ~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++.--..+|.--++||+|+||.|.-.+....+++.|-|+++.
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK 110 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNK 110 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhH
Confidence 3444445678888999999999999998866668889999964
No 218
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.41 E-value=5.9 Score=22.98 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=6.6
Q ss_pred CCCCEEEccccccc
Q 038612 146 RSLKFLNVEENNFS 159 (678)
Q Consensus 146 ~~L~~L~L~~n~l~ 159 (678)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34445555555443
No 219
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=62.49 E-value=2.3 Score=43.01 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=24.8
Q ss_pred eeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 638 MIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 638 ~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
-+|+|.||.|-+|.=..-|+.||||.++.+
T Consensus 60 tLGkGTYGKVk~A~e~~sgR~VAiKsIrKd 89 (668)
T KOG0611|consen 60 TLGKGTYGKVKLAYEHKSGREVAIKSIRKD 89 (668)
T ss_pred HhcCCcccceeehhhccCCcEeehhhhhhh
Confidence 489999999999976344699999999654
No 220
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.09 E-value=5.5 Score=23.05 Aligned_cols=13 Identities=54% Similarity=0.718 Sum_probs=7.9
Q ss_pred CCCEEECCCCccc
Q 038612 492 SLKVLDLSRNNLS 504 (678)
Q Consensus 492 ~L~~L~ls~n~l~ 504 (678)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666665
No 221
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=61.91 E-value=9.9 Score=32.97 Aligned_cols=12 Identities=8% Similarity=0.575 Sum_probs=7.0
Q ss_pred hhcccccceecc
Q 038612 630 TNEFSTSNMIGQ 641 (678)
Q Consensus 630 t~~f~~~~~iG~ 641 (678)
+++|..+.-+|.
T Consensus 111 ~~~y~s~splg~ 122 (154)
T PF04478_consen 111 SDKYESNSPLGS 122 (154)
T ss_pred ccccccCCCCCC
Confidence 455665666665
No 222
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=60.00 E-value=7.3 Score=42.05 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=35.9
Q ss_pred CCceeeHHHHHHh------------hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 617 KFPFVSYAALRKA------------TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 617 ~~~~~s~~el~~a------------t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..+.++++|+.+. =..|+ ..-||.-+.|.||||++++| +.||||+-+.+
T Consensus 136 ~~Pp~~~ee~~~i~e~ElG~~ie~if~~f~-~~piaaASlaQVhrA~L~~G-~~VaVKVQ~P~ 196 (538)
T KOG1235|consen 136 QAPPFPWEEAFKIFEEELGAPIEDIFSEFD-EEPIAAASLAQVHRARLKNG-EDVAVKVQHPG 196 (538)
T ss_pred cCCCCCHHHHHHHHHHHhCCCHHHHHHhcC-cchhhhcchhheEEEEecCC-CEEEEEecCcC
Confidence 3456777765422 22343 45789999999999999875 99999998765
No 223
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=59.88 E-value=20 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=10.4
Q ss_pred EEEeehhhHHHHHHHHHhhhhheeec
Q 038612 577 VKVIIPVIMSCLILSACFLVVYARRR 602 (678)
Q Consensus 577 ~~i~i~~~~~~~~~~~~~~~~~~~~~ 602 (678)
+.+++++++++..++.++.|++++||
T Consensus 69 agi~vg~~~~v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGFLCWWFVCRG 94 (96)
T ss_pred EEEEeehhhHHHHHHHHHhheeEEee
Confidence 34444443333333334444444433
No 224
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=59.57 E-value=6.1 Score=44.30 Aligned_cols=46 Identities=28% Similarity=0.621 Sum_probs=33.6
Q ss_pred HHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 623 YAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 623 ~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
++.+...+.-|.-..+||.|-+|.|||+.=...|+.+|||.+....
T Consensus 11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~ 56 (953)
T KOG0587|consen 11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE 56 (953)
T ss_pred hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc
Confidence 3333344555666788999999999999765556999999996543
No 225
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.52 E-value=4.3 Score=39.86 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=29.8
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|+--+++|+|.||+|.--.=...|+..|+|.++.
T Consensus 167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkK 203 (516)
T KOG0690|consen 167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKK 203 (516)
T ss_pred cchhhHHHHhcCCccceEEEEeecccCceeehhhhhh
Confidence 3568888999999999998765544568999999964
No 226
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=57.38 E-value=8.9 Score=37.41 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=29.0
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|.....+|.|+||.|--..-...|...|.|.|+.
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k 79 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDK 79 (355)
T ss_pred hhheeeeccCccceEEEEEEccCCceeehhhcCH
Confidence 5556789999999999998876779999999954
No 227
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=55.51 E-value=5.2 Score=39.33 Aligned_cols=40 Identities=25% Similarity=0.472 Sum_probs=31.0
Q ss_pred eHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 622 s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|+|+-+.|. .++|+|+||.|--.+--..|...|||.+..
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidK 113 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDK 113 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhc
Confidence 4788888776 579999999998776433358899999953
No 228
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=52.50 E-value=5.6 Score=43.20 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=26.8
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
|.--.++|.|.||.|||+.=...|+.+|||.++
T Consensus 17 yellqrvgsgTygdvyKaRd~~s~elaavkvVk 49 (829)
T KOG0576|consen 17 YELLQRVGSGTYGDVYKARDKRSGELAAVKVVK 49 (829)
T ss_pred hhheeeecCCcccchhhhcccccCchhhheeee
Confidence 444578999999999999764445899999996
No 229
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=51.91 E-value=6 Score=30.07 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.5
Q ss_pred ceeeHHHHHHhhhccccc
Q 038612 619 PFVSYAALRKATNEFSTS 636 (678)
Q Consensus 619 ~~~s~~el~~at~~f~~~ 636 (678)
...+|+|.-+|...|+.+
T Consensus 55 DP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp -GGGSSSHHHHHHHCSSB
T ss_pred CcccccCHHHHHHHHHhh
Confidence 457899999999999764
No 230
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.77 E-value=10 Score=22.34 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=9.0
Q ss_pred CCCcEEEcccCCCCc
Q 038612 273 SKLEWLELRKNQFGG 287 (678)
Q Consensus 273 ~~L~~L~L~~n~~~~ 287 (678)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 346666666666653
No 231
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=51.48 E-value=6.7 Score=46.13 Aligned_cols=38 Identities=37% Similarity=0.635 Sum_probs=32.0
Q ss_pred HhhhcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
..+-++...+.||+|-||.||-|+=.+.|+..|||-++
T Consensus 1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~ 1269 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIK 1269 (1509)
T ss_pred cceeeeccccccCCcceeeeEEeecCCccchhhhhhhh
Confidence 33556667899999999999999887788999999885
No 232
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=49.64 E-value=19 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=10.9
Q ss_pred EEEEeehhhH-HHHHHHHHhhhhh
Q 038612 576 LVKVIIPVIM-SCLILSACFLVVY 598 (678)
Q Consensus 576 ~~~i~i~~~~-~~~~~~~~~~~~~ 598 (678)
.+.++.++++ +.++++++.++++
T Consensus 10 ~vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred eEEEEEEEEechHHHHHHHHHHhh
Confidence 4556666654 4444433333333
No 233
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=49.24 E-value=3.1 Score=44.01 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=29.9
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEee--ccCCCcccCcccC
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVIN--LNQKGGFRSFVAE 678 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~--~~~~~~~~~F~~E 678 (678)
.+.||+||...|||..-.|. +.+|.|+.. +...+....|.+|
T Consensus 366 lk~iG~GGSSkV~kV~~s~~-~iyalkkv~~~~~D~qtl~gy~nE 409 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDK-QIYALKKVVLLEADNQTLDGYRNE 409 (677)
T ss_pred HHhhcCCCcceeeeeecCCC-cchhhhHHHHhhcCHHHHHHHHHH
Confidence 35699999999999998766 888988884 2333444445443
No 234
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=46.76 E-value=20 Score=38.51 Aligned_cols=35 Identities=31% Similarity=0.541 Sum_probs=28.7
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+|..-+.+|+|+||.|.-++-...--.|+||.+..
T Consensus 562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~K 596 (772)
T KOG1152|consen 562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFK 596 (772)
T ss_pred cceeeeeccccccceEEEeeecccceEEEeeehhh
Confidence 46667889999999999999865546899999854
No 235
>PF15102 TMEM154: TMEM154 protein family
Probab=46.50 E-value=23 Score=30.53 Aligned_cols=9 Identities=22% Similarity=0.947 Sum_probs=4.3
Q ss_pred EEEEeehhh
Q 038612 576 LVKVIIPVI 584 (678)
Q Consensus 576 ~~~i~i~~~ 584 (678)
+..++++.+
T Consensus 58 iLmIlIP~V 66 (146)
T PF15102_consen 58 ILMILIPLV 66 (146)
T ss_pred EEEEeHHHH
Confidence 444555544
No 236
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=45.58 E-value=27 Score=33.65 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=24.9
Q ss_pred ccceec-cCCCceEEEEEECCCCeEEEEEEeec
Q 038612 635 TSNMIG-QGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 635 ~~~~iG-~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
...++| .||.|+||+.... + ..+|||+...
T Consensus 35 ~~~~lg~~~g~gtv~~v~~~-~-~~~vlk~~~r 65 (239)
T PRK01723 35 QARVVGSAKGRGTTWFVQTP-G-VNWVLRHYRR 65 (239)
T ss_pred cCceeecCCCCccEEEEEeC-C-ceEEEEEeeE
Confidence 356898 9999999999995 4 7899999864
No 237
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=44.77 E-value=24 Score=32.53 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=11.8
Q ss_pred ceeeEEEEeehhhHHHHHHHHHhhhh
Q 038612 572 KVTFLVKVIIPVIMSCLILSACFLVV 597 (678)
Q Consensus 572 ~~~~~~~i~i~~~~~~~~~~~~~~~~ 597 (678)
+...+++++++++.+++++++.+++.
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 34444555555544444444333343
No 238
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=44.52 E-value=7.4 Score=38.23 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhccCCceeeHHHHHH
Q 038612 613 LIEQKFPFVSYAALRK 628 (678)
Q Consensus 613 ~~~~~~~~~s~~el~~ 628 (678)
+..++.+.+.-+|+++
T Consensus 186 f~~KGiPvIF~dElee 201 (290)
T PF05454_consen 186 FISKGIPVIFQDELEE 201 (290)
T ss_dssp ----------------
T ss_pred HHhcCCceeccccccc
Confidence 3444455555556554
No 239
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.46 E-value=8.2 Score=38.03 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=30.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.--.+||+|+|.+|..+.+....+..|+|.++.
T Consensus 250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkk 285 (593)
T KOG0695|consen 250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKK 285 (593)
T ss_pred ccceeeeeecCcchhhhhheehcccceeeehhhHHH
Confidence 457888999999999999999865557889999864
No 240
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=42.82 E-value=7.8 Score=39.12 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=28.4
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++.|.--..+|+|.||.|-+-.=...++.||||.+++
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~ 124 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN 124 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHH
Confidence 4445555679999999999887654458999999864
No 241
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=42.76 E-value=32 Score=32.05 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=27.2
Q ss_pred hcccccceeccCCC-ceEEEEEECCCCeEEEEEEe
Q 038612 631 NEFSTSNMIGQGSF-GIVYKGIFSENGMVVAVKVI 664 (678)
Q Consensus 631 ~~f~~~~~iG~G~~-G~Vykg~l~~~g~~vAvK~l 664 (678)
.+|.--+.+|.|.. |.|||..+. |+..|+|..
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I~--g~~YALKlf 69 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEID--GRIYALKLF 69 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEEC--CeEEEEEEe
Confidence 45666788999999 999999995 489999994
No 242
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.45 E-value=13 Score=47.49 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=24.3
Q ss_pred ECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCC
Q 038612 497 DLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPA 533 (678)
Q Consensus 497 ~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 533 (678)
||++|+|+...+..|..+++|+.|+|++|++.|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 4666666655556666666777777777777666554
No 243
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=40.36 E-value=11 Score=36.32 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=32.4
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccCcccC
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
.|+-.+.+|+|.||.+--++-....+.||+|-..+-.. ..++|.+|
T Consensus 25 ~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-t~~dF~rE 70 (378)
T KOG1345|consen 25 VYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-TQADFVRE 70 (378)
T ss_pred hhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-hHHHHHHH
Confidence 35667889999999999988765557889888854322 23456554
No 244
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=38.64 E-value=32 Score=37.19 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=31.0
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.++.-..-||+|.||+|.-|+-...|..||||-+...
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt 92 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKT 92 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhc
Confidence 34555677899999999999988777799999988643
No 245
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=37.80 E-value=6.6 Score=41.36 Aligned_cols=36 Identities=31% Similarity=0.568 Sum_probs=30.7
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
.++|.....+|+||||+|+.+....++-..|||++.
T Consensus 48 a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkrit 83 (516)
T KOG1033|consen 48 ANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRIT 83 (516)
T ss_pred hccccccccccccCccccCCccccccchhhHHHHhc
Confidence 467888999999999999999876664578999995
No 246
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.42 E-value=16 Score=38.86 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=34.8
Q ss_pred CcccCCeeecccCccccc--CCccccCCCCCCEEECcCCccccccCcccc--CCCCCCEEECCCCcccc
Q 038612 441 NLKNLARLDISMNHFFGE--IPATLSACTSLEYLYMQGNSFGGRIPLSLI--SLKSLKVLDLSRNNLSG 505 (678)
Q Consensus 441 ~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~~ 505 (678)
+.+.+..+.|++|++... +...-...++|+.|+|++|...-.....+. +...|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 446677777888876421 111122456777788887722111111121 12346777777777654
No 247
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=34.80 E-value=31 Score=36.62 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=24.7
Q ss_pred eeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 638 MIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 638 ~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
-.|+|-|++|.+|.=...|+.||||.+..+
T Consensus 439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN 468 (752)
T KOG0670|consen 439 YTGKGVFSTVVRARDQARGQEVAIKIIRNN 468 (752)
T ss_pred ccccceeeeeeeccccCCCCeeEEEEeecc
Confidence 368999999999976555689999999643
No 248
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.19 E-value=33 Score=19.60 Aligned_cols=14 Identities=43% Similarity=0.275 Sum_probs=10.2
Q ss_pred CCCCCEEeCCcCcc
Q 038612 514 LPFLQYLDLSYNHF 527 (678)
Q Consensus 514 l~~L~~L~l~~n~l 527 (678)
+++|+.|++++|+-
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 46788888888763
No 249
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=30.38 E-value=17 Score=26.29 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=0.0
Q ss_pred EEeehhh
Q 038612 578 KVIIPVI 584 (678)
Q Consensus 578 ~i~i~~~ 584 (678)
+++++.+
T Consensus 13 avIaG~V 19 (64)
T PF01034_consen 13 AVIAGGV 19 (64)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3343433
No 250
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=30.21 E-value=42 Score=26.64 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=15.4
Q ss_pred eccC-CCceEEEEEECCCCeEEEEE
Q 038612 639 IGQG-SFGIVYKGIFSENGMVVAVK 662 (678)
Q Consensus 639 iG~G-~~G~Vykg~l~~~g~~vAvK 662 (678)
-|+| .-|+||| +.+| +.|-|.
T Consensus 70 ~G~G~~~G~aYr--l~~G-k~I~Vp 91 (92)
T PF09919_consen 70 SGSGERLGTAYR--LKDG-KLIYVP 91 (92)
T ss_pred CCCCeECeEEEE--cCCc-eEEEec
Confidence 3566 6699999 7665 888763
No 251
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.38 E-value=29 Score=37.09 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCCCcEEECCCCCCCccC-ChhhhcCCCCCCEEEcccCcCCCCCCccCcC--CCCCcEEeccCCcce
Q 038612 169 ISSLEMIFLPANRLEGIL-PLNIGFNLPNLKSLIVAQNNLTGPIPHSLSN--ASNLIELNLGQNHFT 232 (678)
Q Consensus 169 l~~L~~L~l~~n~~~~~~-p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~ 232 (678)
.+.+..++|++|++...- -..+....|+|.+|+|++|...-....++.+ ...|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 344445555555443111 0122234566666666666221111122322 234666666666664
No 252
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.17 E-value=24 Score=37.25 Aligned_cols=30 Identities=40% Similarity=0.679 Sum_probs=23.8
Q ss_pred ccceeccCCCceEEEE--EECCCCeEEEEEEeec
Q 038612 635 TSNMIGQGSFGIVYKG--IFSENGMVVAVKVINL 666 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg--~l~~~g~~vAvK~l~~ 666 (678)
-++-||+|.|..|--| ++. |+.||||.+..
T Consensus 22 LekTlG~GHFAVVKLArHVFT--GekVAVKviDK 53 (864)
T KOG4717|consen 22 LEKTLGRGHFAVVKLARHVFT--GEKVAVKVIDK 53 (864)
T ss_pred hhhhhcCCceehhhhhhhhcc--cceeEEEEecc
Confidence 3456999999998755 675 59999999954
No 253
>PHA03265 envelope glycoprotein D; Provisional
Probab=26.49 E-value=32 Score=34.20 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=13.3
Q ss_pred EEEEeehhhHHHHHHHHHhhhhheeecc
Q 038612 576 LVKVIIPVIMSCLILSACFLVVYARRRR 603 (678)
Q Consensus 576 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 603 (678)
.+.++++..++.++++.+++++++|||+
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 4455555554444444444444444443
No 254
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=25.99 E-value=23 Score=38.36 Aligned_cols=25 Identities=40% Similarity=0.747 Sum_probs=20.1
Q ss_pred cceeccCCCceEEEEEECCCCeEEE
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVA 660 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vA 660 (678)
+.+||+|+|=+||||.=...|..||
T Consensus 45 ~evLGrGafKtVYka~De~~giEVA 69 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVA 69 (632)
T ss_pred hhhcccccceeeeeccccccchhhH
Confidence 4579999999999997655556666
No 255
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.59 E-value=21 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.592 Sum_probs=24.3
Q ss_pred cceeccCCCceEEEEE-ECCCCeEEEEEEeec
Q 038612 636 SNMIGQGSFGIVYKGI-FSENGMVVAVKVINL 666 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~-l~~~g~~vAvK~l~~ 666 (678)
-+.+|+|.|.+||.|. ..+. +.++||.|+.
T Consensus 43 vrk~GRGKYSEVFeg~~~~~~-eK~ViKiLKP 73 (338)
T KOG0668|consen 43 VRKVGRGKYSEVFEGINITNN-EKCVIKILKP 73 (338)
T ss_pred HHHHcCccHhhHhcccccCCC-ceEEEeeech
Confidence 4568999999999997 3344 8899999964
No 256
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.91 E-value=34 Score=33.09 Aligned_cols=6 Identities=17% Similarity=0.550 Sum_probs=2.2
Q ss_pred hhhhhe
Q 038612 594 FLVVYA 599 (678)
Q Consensus 594 ~~~~~~ 599 (678)
++++|.
T Consensus 277 iLYiWl 282 (295)
T TIGR01478 277 ILYIWL 282 (295)
T ss_pred HHHHHH
Confidence 333333
No 257
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.96 E-value=41 Score=33.81 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=11.4
Q ss_pred EeehhhHHHHHHHHHhhhhheeeccC
Q 038612 579 VIIPVIMSCLILSACFLVVYARRRRS 604 (678)
Q Consensus 579 i~i~~~~~~~~~~~~~~~~~~~~~~~ 604 (678)
|+++++++++++++++++++.|||++
T Consensus 275 IaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 275 IAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHHHHHHHHHHHhheeEecccc
Confidence 44444444444444444444454443
No 258
>PRK14051 negative regulator GrlR; Provisional
Probab=21.66 E-value=1e+02 Score=24.87 Aligned_cols=20 Identities=45% Similarity=0.826 Sum_probs=17.5
Q ss_pred cceeccCCCceEEEEEECCC
Q 038612 636 SNMIGQGSFGIVYKGIFSEN 655 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~ 655 (678)
.+.|..|-+|.||.|.++++
T Consensus 28 ~nkInGGD~~~~YqG~isEd 47 (123)
T PRK14051 28 GNMITGGDIASVYQGVLSED 47 (123)
T ss_pred CCEecCCccceEEecccccc
Confidence 47788999999999999766
No 259
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=20.71 E-value=1.1e+02 Score=29.91 Aligned_cols=31 Identities=35% Similarity=0.336 Sum_probs=26.8
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.||-|.=+.||.|.-+.| ..+|||--+.|
T Consensus 96 G~~IGvGKEsdVY~~~~~~g-~~~~vKfHR~G 126 (304)
T COG0478 96 GTKIGVGKESDVYVAIDPKG-RKVAVKFHRLG 126 (304)
T ss_pred ccccccCccceEEEEECCCC-CEEEEEEeecC
Confidence 47799999999999999765 99999987655
No 260
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=20.71 E-value=1.1e+02 Score=32.02 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=24.4
Q ss_pred ceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 637 NMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
..+|.|-++.||+....+|++.|.||+..
T Consensus 32 ~elggGn~N~VyrV~~~~g~~svIVKqa~ 60 (401)
T PRK09550 32 REIGDGNLNLVFRVSDTEGGKSVIVKQAL 60 (401)
T ss_pred eEcCCCceEEEEEEEeCCCCeEEEEEecC
Confidence 46899999999999997654689999863
Done!